Citrus Sinensis ID: 010637
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 505 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SH69 | 487 | 6-phosphogluconate dehydr | yes | no | 0.954 | 0.989 | 0.883 | 0.0 | |
| Q9FFR3 | 487 | 6-phosphogluconate dehydr | no | no | 0.954 | 0.989 | 0.883 | 0.0 | |
| Q94KU2 | 537 | 6-phosphogluconate dehydr | N/A | no | 0.958 | 0.901 | 0.847 | 0.0 | |
| Q94KU1 | 483 | 6-phosphogluconate dehydr | N/A | no | 0.938 | 0.981 | 0.771 | 0.0 | |
| Q9LI00 | 480 | 6-phosphogluconate dehydr | yes | no | 0.934 | 0.983 | 0.766 | 0.0 | |
| Q9FWA3 | 486 | 6-phosphogluconate dehydr | no | no | 0.938 | 0.975 | 0.756 | 0.0 | |
| Q2R480 | 508 | 6-phosphogluconate dehydr | no | no | 0.938 | 0.933 | 0.761 | 0.0 | |
| P21577 | 471 | 6-phosphogluconate dehydr | yes | no | 0.922 | 0.989 | 0.566 | 1e-154 | |
| P80859 | 469 | 6-phosphogluconate dehydr | yes | no | 0.920 | 0.991 | 0.525 | 1e-145 | |
| P52208 | 482 | 6-phosphogluconate dehydr | N/A | no | 0.914 | 0.958 | 0.536 | 1e-140 |
| >sp|Q9SH69|6PGD1_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic OS=Arabidopsis thaliana GN=At1g64190 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/482 (88%), Positives = 460/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDETLDRA EG LP++G
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRS+IILVKAG+PVDQTI A SE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A QKGLLYLGMGVSGGEEGAR+GPSLMPGGSF+AY+NI+DIL+KVAAQV+DGPCVTYIGE
Sbjct: 121 AEQKGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN ELAEIF EWN GELESFLVEIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELAEIFTEWNSGELESFLVEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+DIF+VKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK+
Sbjct: 241 SDIFRVKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKD 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AAKVL+EAGLK+E+ + +DKKRL+DDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 ERENAAKVLREAGLKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNP+LASLVVDPEFA+EMVQRQAAWRRV
Sbjct: 361 SWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLA+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER DRPG++HTEWT
Sbjct: 421 VGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 4 |
| >sp|Q9FFR3|6PGD2_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Arabidopsis thaliana GN=At5g41670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/482 (88%), Positives = 461/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME+ ALSRIGLAGLAVMGQNLALN+A+KGFPISVYNRTTSKVDETLDRA EG+LP+ G
Sbjct: 1 MESVALSRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLDRASNEGKLPVAGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRSVIILVKAG+PVDQTI+ALSE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A +KGLLYLGMGVSGGEEGAR+GPSLMPGGSF AYNN++DIL+KVAAQV+DGPCVTYIGE
Sbjct: 121 AEKKGLLYLGMGVSGGEEGARNGPSLMPGGSFTAYNNVKDILEKVAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN ELAEIF EWN+GELESFLVEIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNDELAEIFTEWNRGELESFLVEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+DIF+VKD+YG+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK+
Sbjct: 241 SDIFRVKDDYGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKD 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AAKVL+EAGLK+++ + VDKKRLIDDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 ERENAAKVLEEAGLKEDIGSASRGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSLEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GW+LN GE+ARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP+FA+EMVQRQAAWRRV
Sbjct: 361 GWDLNLGEMARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPDFAKEMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER DRPG++HTEWT
Sbjct: 421 VGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q94KU2|6PGD2_SPIOL 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Spinacia oleracea GN=pgdP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/484 (84%), Positives = 443/484 (91%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A S+IGL GLAVMGQNLALN+AEKGFPISVYNRT SKVDETLDRA EG LPL+GHYTPR
Sbjct: 47 AASQIGLVGLAVMGQNLALNIAEKGFPISVYNRTASKVDETLDRAKSEGDLPLSGHYTPR 106
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
DFVLSI+RPRS++ILVKAGSPVDQTIA+L+ M PGD IIDGGNEWY NTERR+ +A
Sbjct: 107 DFVLSIERPRSIVILVKAGSPVDQTIASLASFMEPGDTIIDGGNEWYQNTERRLSDAHSN 166
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 184
GLLYLGMGVSGGEEGAR GPSLMPGG F+AY+NI+ IL+KVAAQVDDGPCVTYIGEGGSG
Sbjct: 167 GLLYLGMGVSGGEEGARFGPSLMPGGDFQAYDNIQHILKKVAAQVDDGPCVTYIGEGGSG 226
Query: 185 NFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIF 244
NFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN EL +IFDEWNK ELESFLVEITADIF
Sbjct: 227 NFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELGQIFDEWNKSELESFLVEITADIF 286
Query: 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREK 304
KVKD+ +G LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE
Sbjct: 287 KVKDDLADGGLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREN 346
Query: 305 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNL 364
AAK+L+ AG+K+EV + VDKKRLIDDVRQALYASKICSYAQGMNLLR+KS E GW+L
Sbjct: 347 AAKILEAAGMKEEVNAIRGGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSAEMGWDL 406
Query: 365 NFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 424
N GELARIWKGGCIIRAVFLD IK+AYQRNPNLASLVVDPEFA+EMVQRQAAWRRVVGLA
Sbjct: 407 NLGELARIWKGGCIIRAVFLDSIKQAYQRNPNLASLVVDPEFAKEMVQRQAAWRRVVGLA 466
Query: 425 ISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKLPA 484
+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRD FGAHTYER+D PGS+HTEW+KL
Sbjct: 467 VSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDLPGSYHTEWSKLAR 526
Query: 485 RLVP 488
+ P
Sbjct: 527 KSDP 530
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q94KU1|6PGD1_SPIOL 6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Spinacia oleracea GN=pgdC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/476 (77%), Positives = 419/476 (88%), Gaps = 2/476 (0%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+RIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET++RA +EG LPL G + P F
Sbjct: 5 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 64
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
V SIQ+PR +I+LVKAG+PVD TI LS ++ GDCIIDGGNEWY NTERR +KGL
Sbjct: 65 VNSIQKPRVIIMLVKAGAPVDATIKTLSAYLEKGDCIIDGGNEWYENTERREKAMEEKGL 124
Query: 127 LYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 186
LYLGMGVSGGEEGAR+GPS+MPGGSF+AY NI DIL KVAAQVD GPCVTYIG+GGSGNF
Sbjct: 125 LYLGMGVSGGEEGARNGPSMMPGGSFDAYKNIEDILTKVAAQVDSGPCVTYIGKGGSGNF 184
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246
VKM+HNGIEYGDMQLI+EAYDVLK VG LSN EL E+F EWN+GEL SFL+EITADIF +
Sbjct: 185 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELKEVFAEWNRGELLSFLIEITADIFGI 244
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
KD+ GEG LVDK+LDKTGMKGTGKWTVQQAAELSVAAPTIA+SLD R+LSGLK+ER +AA
Sbjct: 245 KDDKGEGYLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIASSLDSRFLSGLKDERVEAA 304
Query: 307 KVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNF 366
KV K G++D + + VDKK+LIDDVRQALYA+KICSYAQGMNL+R+KS EK W+L
Sbjct: 305 KVFKAGGVEDTLSD--QVVDKKKLIDDVRQALYAAKICSYAQGMNLIRAKSVEKEWDLKL 362
Query: 367 GELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAIS 426
GELARIWKGGCIIRA+FLDRIKKAY RNPNL++L++DPEF++EM++RQ+AWRRVV LAI
Sbjct: 363 GELARIWKGGCIIRAMFLDRIKKAYDRNPNLSNLLIDPEFSKEMIERQSAWRRVVCLAIG 422
Query: 427 AGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
AGISTPGM +SL+YFD+YRR RLPANLVQAQRD FGAHTYERID PG+FHTEW KL
Sbjct: 423 AGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDIPGAFHTEWFKL 478
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9LI00|6PGD1_ORYSJ 6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Oryza sativa subsp. japonica GN=G6PGH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/479 (76%), Positives = 415/479 (86%), Gaps = 7/479 (1%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A++RIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET+ RA EG LP+ G + P
Sbjct: 2 AVTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDPA 61
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
FV SIQ+PR VI+LVKAG+PVDQTIA L+ H+ GDCIIDGGNEWY NTERR ++
Sbjct: 62 SFVNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEER 121
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPCVTYIGEGGS 183
GLLYLGMGVSGGEEGAR+GPSLMPGGSFEAY I DIL KVAAQV D GPCVTYIG+GGS
Sbjct: 122 GLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGS 181
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243
GNFVKMVHNGIEYGDMQLISEAYDVLK VG L+N+EL ++F EWNKGEL SFL+EITADI
Sbjct: 182 GNFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLSFLIEITADI 241
Query: 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE 303
F +KD+ G G LVDK+LDKTGMKGTGKWTVQQAAELSVAAPTI ASLD R+LSGLK+ER
Sbjct: 242 FSIKDDQGSGHLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIEASLDSRFLSGLKDERV 301
Query: 304 KAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 363
+AAKV + D N+ VDK +LI+DVRQALYASKICSYAQGMN++++KS EKGW+
Sbjct: 302 EAAKVFQ----GDFSSNL--PVDKAQLIEDVRQALYASKICSYAQGMNIIKAKSMEKGWS 355
Query: 364 LNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423
LN GELARIWKGGCIIRA+FLDRIKKAY RN +LA+L+VDPEFA+E++ RQAAWRRVV L
Sbjct: 356 LNLGELARIWKGGCIIRAIFLDRIKKAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVVCL 415
Query: 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
AI+ G+STPGM ASL+YFD+YRR RLPANLVQAQRD FGAHTYER+D PGSFHTEW K+
Sbjct: 416 AINNGVSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKI 474
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9FWA3|6GPD3_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 3 OS=Arabidopsis thaliana GN=At3g02360 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/477 (75%), Positives = 412/477 (86%), Gaps = 3/477 (0%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+RIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET++RA +EG LPL G + P F
Sbjct: 6 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFHDPESF 65
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
V SIQ+PR +I+LVKAGSPVDQTI LS ++ GDCI+DGGNEWY NTERR ++ G
Sbjct: 66 VKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAVAENGF 125
Query: 127 LYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPCVTYIGEGGSGN 185
LYLGMGVSGGEEGAR+GPS+MPGGS+EAY NI DI+ KVAAQV D GPCVTYIG+GGSGN
Sbjct: 126 LYLGMGVSGGEEGARNGPSMMPGGSYEAYKNIEDIVLKVAAQVRDSGPCVTYIGKGGSGN 185
Query: 186 FVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFK 245
FVKMVHNGIEYGDMQLI+EAYDVLK VG LSN EL +F +WNKGELESFLVEITADIF
Sbjct: 186 FVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELHSVFSDWNKGELESFLVEITADIFG 245
Query: 246 VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKA 305
+KD+ G+G LVDK+LDKTGMKGTGKWTVQQAAELSV APTI +SLD R+LSGLK+ER +A
Sbjct: 246 IKDDKGDGHLVDKVLDKTGMKGTGKWTVQQAAELSVPAPTIESSLDARFLSGLKDERVQA 305
Query: 306 AKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLN 365
AKV K G D + + VDKK+L+DDVR+ALYASKICSYAQGMNL+R+KS EKGW L
Sbjct: 306 AKVFKAGGFGDILTDQ--KVDKKQLVDDVRKALYASKICSYAQGMNLIRAKSIEKGWGLK 363
Query: 366 FGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAI 425
GELARIWKGGCIIRA+FLDRIK+AY RN LA+L+VDPEFA+E+++RQ+AWRRVV LAI
Sbjct: 364 LGELARIWKGGCIIRAIFLDRIKQAYDRNAELANLLVDPEFAKEIIERQSAWRRVVCLAI 423
Query: 426 SAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
++GISTPGM ASL+YFD+YRR RLPANLVQAQRD FGAHTYER D GSFHTEW K+
Sbjct: 424 NSGISTPGMSASLAYFDSYRRERLPANLVQAQRDYFGAHTYERTDVEGSFHTEWFKI 480
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q2R480|6PGD2_ORYSJ 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Oryza sativa subsp. japonica GN=G6PGH2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/478 (76%), Positives = 408/478 (85%), Gaps = 4/478 (0%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
RIGLAGLA MGQNLALN+AEKGFPISVYNRT +KVD T+ RA EG LP+ GH PR FV
Sbjct: 23 RIGLAGLATMGQNLALNIAEKGFPISVYNRTAAKVDATVSRAEAEGALPVLGHRDPRGFV 82
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
LS+ RPR+V++LV+AG VD TI AL ++ GD I+DGGNEWY NTERRI EA+ +G+L
Sbjct: 83 LSLSRPRTVVLLVQAGRAVDATIDALVPYLDAGDAIVDGGNEWYQNTERRIEEAAARGIL 142
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187
YLGMGVSGGEEGAR+GPSLMPGG +AYNNIRDIL+K AAQ +DG CVT++G GG+GNFV
Sbjct: 143 YLGMGVSGGEEGARNGPSLMPGGHIDAYNNIRDILEKAAAQTEDGACVTFVGPGGAGNFV 202
Query: 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVK 247
KMVHNGIEYGDMQLI+EAYDVL+ VGGLSN+E+A++F EWN+GELESFLVEITADIF V
Sbjct: 203 KMVHNGIEYGDMQLIAEAYDVLRRVGGLSNSEIADVFAEWNRGELESFLVEITADIFTVA 262
Query: 248 DEY---GEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREK 304
D G G LVDKILDKTGMKGTGKWTVQQAAEL++AAPTIAASLD RYLSGLK+ER
Sbjct: 263 DPLDGSGGGGLVDKILDKTGMKGTGKWTVQQAAELAIAAPTIAASLDGRYLSGLKDERVA 322
Query: 305 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNL 364
AA VL+ G+ + ++VDKK L+D VRQALYASKICSYAQGMNLLR+KS EKGWNL
Sbjct: 323 AAGVLEAEGMPSGLLET-INVDKKMLVDRVRQALYASKICSYAQGMNLLRAKSVEKGWNL 381
Query: 365 NFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 424
N ELARIWKGGCIIRA FLDRIKKAY RNP LA+L+VD EFAREMVQRQ AWR VV A
Sbjct: 382 NLAELARIWKGGCIIRAKFLDRIKKAYDRNPELANLIVDREFAREMVQRQNAWRWVVARA 441
Query: 425 ISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
+ AGISTPGM ASLSYFDTYR +RLPANL+QAQRDLFGAHTYERIDRPGSFHTEWTKL
Sbjct: 442 VEAGISTPGMSASLSYFDTYRCSRLPANLIQAQRDLFGAHTYERIDRPGSFHTEWTKL 499
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P21577|6PGD_SYNE7 6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4 | Back alignment and function description |
|---|
Score = 544 bits (1401), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/478 (56%), Positives = 343/478 (71%), Gaps = 12/478 (2%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL-DRAHREGQLPLTGHYTP 63
AL + GL GLAVMG+NLALN+ GF ++VYNRT K + + DRA + +P Y+
Sbjct: 2 ALQQFGLIGLAVMGENLALNIERNGFSLTVYNRTAEKTEAFMADRAQGKNIVP---AYSL 58
Query: 64 RDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ 123
DFV S++RPR ++++VKAG PVD + L + PGD IIDGGN + +TERR+ +
Sbjct: 59 EDFVASLERPRRILVMVKAGGPVDAVVEQLKPLLDPGDLIIDGGNSLFTDTERRVKDLEA 118
Query: 124 KGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGS 183
GL ++GMGVSGGEEGA +GPSLMPGG+ AY + I++ +AAQVDDGPCVTYIG GGS
Sbjct: 119 LGLGFMGMGVSGGEEGALNGPSLMPGGTQAAYEAVEPIVRSIAAQVDDGPCVTYIGPGGS 178
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKG-ELESFLVEITAD 242
G++VKMVHNGIEYGDMQLI+EAYD+LK V GL+ +EL ++F WNK EL+SFL+EITAD
Sbjct: 179 GHYVKMVHNGIEYGDMQLIAEAYDLLKSVAGLNASELHDVFAAWNKTPELDSFLIEITAD 238
Query: 243 IFKVKDEYGEGE-LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEE 301
IF D+ G G+ LV+ ILD G KGTG+WTV+ A E+ VA PTI A+++ R LS +K E
Sbjct: 239 IFTKVDDLGTGQPLVELILDAAGQKGTGRWTVETALEIGVAIPTIIAAVNARILSSIKAE 298
Query: 302 REKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKG 361
R+ A+++L +G E D++ ID VR ALY SKICSYAQGM LL S
Sbjct: 299 RQAASEIL--SGPITEP----FSGDRQAFIDSVRDALYCSKICSYAQGMALLAKASQVYN 352
Query: 362 WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVV 421
+ LN GELARIWKGGCIIRA FL++IK+AY +P LA+L++ PEF + ++ RQ AWRRV+
Sbjct: 353 YGLNLGELARIWKGGCIIRAGFLNKIKQAYDADPTLANLLLAPEFRQTILDRQLAWRRVI 412
Query: 422 GLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
+A GI P ASL YFD+YRR RLP NL QAQRD FGAHTYER DR GSFH +W
Sbjct: 413 AIAAERGIPVPAFSASLDYFDSYRRDRLPQNLTQAQRDYFGAHTYERTDRSGSFHAQW 470
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Synechococcus elongatus (strain PCC 7942) (taxid: 1140) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P80859|6PGD2_BACSU 6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis (strain 168) GN=yqjI PE=1 SV=4 | Back alignment and function description |
|---|
Score = 514 bits (1325), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/474 (52%), Positives = 336/474 (70%), Gaps = 9/474 (1%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG+ GLAVMG+NLALN+ +GF +SVYNR++SK +E L A + + G Y+ +FV
Sbjct: 5 QIGVIGLAVMGKNLALNIESRGFSVSVYNRSSSKTEEFLQEAKGKN---VVGTYSIEEFV 61
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
S++ PR ++++VKAG+ D TI +L H+ D +IDGGN +Y +T+RR E ++ G+
Sbjct: 62 QSLETPRKILLMVKAGTATDATIQSLLPHLEKDDILIDGGNTYYKDTQRRNKELAESGIH 121
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187
++G GVSGGEEGA GPS+MPGG EA+ ++ IL+ ++A+VD PC TYIG G+G++V
Sbjct: 122 FIGTGVSGGEEGALKGPSIMPGGQKEAHELVKPILEAISAKVDGEPCTTYIGPDGAGHYV 181
Query: 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVK 247
KMVHNGIEYGDMQLISE+Y +LK V GLS EL E+F EWNKGEL+S+L+EITADIF K
Sbjct: 182 KMVHNGIEYGDMQLISESYFILKQVLGLSADELHEVFAEWNKGELDSYLIEITADIFTKK 241
Query: 248 DEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAK 307
DE LVD ILDK G KGTGKWT Q A +L V P I S+ R++S +KEER KA+
Sbjct: 242 DEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLPIITESVFARFISAMKEERVKASG 301
Query: 308 VLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFG 367
+L +K +N K+ LI+ VR+AL+ SKICSYAQG +++ S E W+L +G
Sbjct: 302 LLSGPEVKPVTEN------KEELIEAVRKALFMSKICSYAQGFAQMKAASEEYNWDLKYG 355
Query: 368 ELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISA 427
E+A I++GGCIIRA FL +IK+AY R P L +L++D F + Q A R+V+ LA++
Sbjct: 356 EIAMIFRGGCIIRAAFLQKIKEAYDREPELDNLLLDSYFKNIVESYQGALRQVISLAVAQ 415
Query: 428 GISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481
G+ P ++L+Y+D+YR A LPANL+QAQRD FGAHTYER D+ G FHTEW K
Sbjct: 416 GVPVPSFSSALAYYDSYRTAVLPANLIQAQRDYFGAHTYERTDKEGIFHTEWMK 469
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P52208|6PGD_SYNY3 6-phosphogluconate dehydrogenase, decarboxylating OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gnd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 497 bits (1279), Expect = e-140, Method: Compositional matrix adjust.
Identities = 256/477 (53%), Positives = 325/477 (68%), Gaps = 15/477 (3%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
G+ GLAVMG+NLALNV +GFPI+V+NR+ +K ++ + A R + YT +FV
Sbjct: 13 FGVIGLAVMGENLALNVESRGFPIAVFNRSPNKTEKFM--AERAVGKDIKAAYTVEEFVQ 70
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
++RPR ++++VKAG PVD I L + GD IIDGGN Y +TERR + GL +
Sbjct: 71 LLERPRKILVMVKAGGPVDAVINELKPLLEEGDMIIDGGNSLYEDTERRTKDLEATGLGF 130
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG---PCVTYIGEGGSGN 185
+GMGVSGGEEGA GPSLMPGG+ AY + IL K+AAQV+D CVT+IG GG+G+
Sbjct: 131 VGMGVSGGEEGALLGPSLMPGGTPAAYKELEPILTKIAAQVEDPDNPACVTFIGPGGAGH 190
Query: 186 FVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNK-GELESFLVEITADIF 244
+VKMVHNGIEYGDMQLI+EAYD+LK+ GLSN +L E+F +WN+ EL SFL+EI+ DIF
Sbjct: 191 YVKMVHNGIEYGDMQLIAEAYDILKNGLGLSNEQLHEVFGQWNQTDELNSFLIEISTDIF 250
Query: 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREK 304
KD G L+D ILD G KGTG+WTV EL V PTI A+++ R +S LKEER
Sbjct: 251 AKKDPETGGHLIDYILDAAGQKGTGRWTVMSGLELGVPIPTIYAAVNARVMSSLKEERVA 310
Query: 305 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNL 364
A+ L +G D + I VR ALY SK+CSYAQGM L+ S E G+++
Sbjct: 311 ASGQL--SGPSKTFSG-----DVEAWIPKVRDALYCSKMCSYAQGMALIAKASQEFGYDV 363
Query: 365 NFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 424
N E+ARIWKGGCIIRA FLD+IKKA++ NP L +L++ PEF + ++ RQ WR V+ LA
Sbjct: 364 NLPEIARIWKGGCIIRAGFLDKIKKAFKDNPQLPNLLLAPEFKQSILDRQGPWREVLMLA 423
Query: 425 ISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGS--FHTEW 479
GI+ P +SL YFD+YRRA LP NL QAQRD FGAHTYER D+P FHTEW
Sbjct: 424 NEMGIAVPAFSSSLDYFDSYRRAVLPQNLTQAQRDYFGAHTYERTDKPRGEFFHTEW 480
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 505 | ||||||
| 255553267 | 495 | 6-phosphogluconate dehydrogenase, putati | 0.954 | 0.973 | 0.921 | 0.0 | |
| 225426063 | 494 | PREDICTED: 6-phosphogluconate dehydrogen | 0.954 | 0.975 | 0.912 | 0.0 | |
| 147798262 | 494 | hypothetical protein VITISV_008240 [Viti | 0.954 | 0.975 | 0.912 | 0.0 | |
| 255537671 | 495 | 6-phosphogluconate dehydrogenase, putati | 0.954 | 0.973 | 0.913 | 0.0 | |
| 356528974 | 495 | PREDICTED: 6-phosphogluconate dehydrogen | 0.954 | 0.973 | 0.888 | 0.0 | |
| 449522891 | 495 | PREDICTED: 6-phosphogluconate dehydrogen | 0.954 | 0.973 | 0.888 | 0.0 | |
| 15222639 | 487 | 6-phosphogluconate dehydrogenase [Arabid | 0.954 | 0.989 | 0.883 | 0.0 | |
| 297836953 | 487 | 6-phosphogluconate dehydrogenase family | 0.954 | 0.989 | 0.883 | 0.0 | |
| 356513305 | 495 | PREDICTED: 6-phosphogluconate dehydrogen | 0.954 | 0.973 | 0.888 | 0.0 | |
| 449464086 | 495 | PREDICTED: 6-phosphogluconate dehydrogen | 0.954 | 0.973 | 0.886 | 0.0 |
| >gi|255553267|ref|XP_002517676.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] gi|223543308|gb|EEF44840.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2379), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/483 (92%), Positives = 465/483 (96%), Gaps = 1/483 (0%)
Query: 1 MEAS-ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG 59
MEAS ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNR+TSKVDET+ RA EG PLTG
Sbjct: 1 MEASVALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRSTSKVDETIHRAQNEGPFPLTG 60
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH 119
HYTPRDFVLS+QRPRSVIILVKAG+PVDQTIAALSEHM GDCIIDGGNEWY NTERRI
Sbjct: 61 HYTPRDFVLSLQRPRSVIILVKAGAPVDQTIAALSEHMEAGDCIIDGGNEWYQNTERRID 120
Query: 120 EASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179
EA+QKGLLYLGMGVSGGEEGAR GPSLMPGGSFEAYNNI+DILQKVAAQV+DGPCVTYIG
Sbjct: 121 EANQKGLLYLGMGVSGGEEGARFGPSLMPGGSFEAYNNIKDILQKVAAQVEDGPCVTYIG 180
Query: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239
EGGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSNAELAEIF EWNKGELESFL+EI
Sbjct: 181 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNAELAEIFTEWNKGELESFLIEI 240
Query: 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
T+DIF+VKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK
Sbjct: 241 TSDIFRVKDEHGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 300
Query: 300 EEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
EERE AA+VLKEAGLK+EV+ V +DKKRLIDDVRQALYASKICSYAQGMNLLR+KS E
Sbjct: 301 EERESAAQVLKEAGLKEEVEAVKSGIDKKRLIDDVRQALYASKICSYAQGMNLLRAKSVE 360
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR
Sbjct: 361 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 420
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
VVGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW
Sbjct: 421 VVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 480
Query: 480 TKL 482
TKL
Sbjct: 481 TKL 483
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426063|ref|XP_002275970.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/482 (91%), Positives = 462/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
MEAS LSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDETLDRAHREG LPL+GH
Sbjct: 1 MEASTLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAHREGHLPLSGH 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRS++ILVKAG+PVDQTIAALSEHM GDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSIVILVKAGAPVDQTIAALSEHMEAGDCIIDGGNEWYENTERRIVE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
AS KG+LYLGMGVSGGEEGARHGPSLMPGGS++AY NI DI++KVAAQVDDGPCVTYIGE
Sbjct: 121 ASGKGILYLGMGVSGGEEGARHGPSLMPGGSYQAYQNIEDIVKKVAAQVDDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN+EL++IF EWN+GELESFL+EIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNSELSDIFGEWNRGELESFLIEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
ADIFKVKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE
Sbjct: 241 ADIFKVKDEHGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AA VL EAGLKDEV VDKKRLIDDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 EREAAAGVLSEAGLKDEVGFARSGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSVEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL+VDPEFAREMVQRQAAWRRV
Sbjct: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLIVDPEFAREMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT
Sbjct: 421 VGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147798262|emb|CAN63456.1| hypothetical protein VITISV_008240 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/482 (91%), Positives = 461/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
MEAS LSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDETLDRAHREG LPL+GH
Sbjct: 1 MEASTLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAHREGHLPLSGH 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y PRDFVLSIQRPRS++ILVKAG+PVDQTIAALSEHM GDCIIDGGNEWY NTERRI E
Sbjct: 61 YXPRDFVLSIQRPRSIVILVKAGAPVDQTIAALSEHMEAGDCIIDGGNEWYENTERRIVE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
AS KG+LYLGMGVSGGEEGARHGPSLMPGGS++AY NI DI++KVAAQVDDGPCVTYIGE
Sbjct: 121 ASGKGILYLGMGVSGGEEGARHGPSLMPGGSYQAYQNIEDIVKKVAAQVDDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN+EL++IF EWN+GELESFL+EIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNSELSDIFGEWNRGELESFLIEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
ADIFKVKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE
Sbjct: 241 ADIFKVKDEHGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AA VL EAGLKDEV VDKKRLIDDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 EREAAAGVLSEAGLKDEVGFARSGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSVEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL+VDPEFAREMVQRQAAWRRV
Sbjct: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLIVDPEFAREMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT
Sbjct: 421 VGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537671|ref|XP_002509902.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] gi|223549801|gb|EEF51289.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 912 bits (2357), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/483 (91%), Positives = 463/483 (95%), Gaps = 1/483 (0%)
Query: 1 MEAS-ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG 59
MEAS ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNR+TSKVD+T+ RA EG PLTG
Sbjct: 1 MEASVALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRSTSKVDDTIHRAQNEGPFPLTG 60
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH 119
HYTPRDFVLS+QRPRSVIILVKAG+PVDQTIAALSEHM GDCIIDGGNEWY NTERRI
Sbjct: 61 HYTPRDFVLSLQRPRSVIILVKAGAPVDQTIAALSEHMEAGDCIIDGGNEWYQNTERRID 120
Query: 120 EASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179
EA+QKG+LYLGMGVSGGEEGAR GPSLMPGGSFEAYNNI+DILQKVAAQV+DGPCVTYIG
Sbjct: 121 EANQKGILYLGMGVSGGEEGARFGPSLMPGGSFEAYNNIKDILQKVAAQVEDGPCVTYIG 180
Query: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239
EGGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSNAELA+IF EWNKGELESFL+EI
Sbjct: 181 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNAELADIFTEWNKGELESFLIEI 240
Query: 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
T+DIF+VKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK
Sbjct: 241 TSDIFRVKDEHGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 300
Query: 300 EEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
EERE AA+VLKEAGLK+EV V +DKKRLIDDVRQALYASKICSYAQGMNLLR+KS E
Sbjct: 301 EERESAAEVLKEAGLKEEVGTVKSGIDKKRLIDDVRQALYASKICSYAQGMNLLRAKSVE 360
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
K WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR
Sbjct: 361 KRWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 420
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
VVGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW
Sbjct: 421 VVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 480
Query: 480 TKL 482
TKL
Sbjct: 481 TKL 483
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528974|ref|XP_003533072.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 899 bits (2323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/483 (88%), Positives = 458/483 (94%), Gaps = 1/483 (0%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRT SKVDET+DRA EG LPLTG
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTASKVDETVDRARNEGSLPLTGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
YTPRDFVLS+QRPRSVIILVKAG+PVDQTIAALS+H+ PGDCIIDGGNEWY NTERR+
Sbjct: 61 YTPRDFVLSLQRPRSVIILVKAGAPVDQTIAALSDHLDPGDCIIDGGNEWYENTERRMSL 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
+ KGLLYLGMGVSGGE+GARHGPSLMPGGS +AY+N++DIL K+AAQV+DGPCVTYIGE
Sbjct: 121 VADKGLLYLGMGVSGGEDGARHGPSLMPGGSHQAYSNVQDILHKIAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN+ELA+IF EWN+GELESFL+EIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNSELADIFAEWNRGELESFLIEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
ADIFKVKDE GEG LVDKILDKTGMKGTGKWTVQQAAELS+AAPTIAASLDCRYLSGLKE
Sbjct: 241 ADIFKVKDEDGEGFLVDKILDKTGMKGTGKWTVQQAAELSIAAPTIAASLDCRYLSGLKE 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVH-VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
ERE AA VLKEAGL DE+ V V VDKKRLIDDVRQALYASKICSYAQGMNLLR+KSNE
Sbjct: 301 ERESAAAVLKEAGLSDELGRVSVSGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSNE 360
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
KGWNLN GELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL+VDPEFAREMVQRQAAWRR
Sbjct: 361 KGWNLNLGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLIVDPEFAREMVQRQAAWRR 420
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
VVGLA+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER+DRPG+FHTEW
Sbjct: 421 VVGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRPGAFHTEW 480
Query: 480 TKL 482
TKL
Sbjct: 481 TKL 483
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522891|ref|XP_004168459.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/483 (88%), Positives = 462/483 (95%), Gaps = 1/483 (0%)
Query: 1 MEAS-ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG 59
MEAS ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET+DRAH EG LPL G
Sbjct: 1 MEASTALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVDRAHNEGNLPLFG 60
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH 119
Y PRDFVLSIQRPRSVIILVKAG PVDQTIAALS+H+ PGD IIDGGNEWY NTERRI
Sbjct: 61 QYNPRDFVLSIQRPRSVIILVKAGLPVDQTIAALSDHLEPGDAIIDGGNEWYENTERRIE 120
Query: 120 EASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179
+AS++GLLYLGMGVSGGE+GARHGPSLMPGGSF+AY+N++DIL+KVAAQVDDGPCVTYIG
Sbjct: 121 QASERGLLYLGMGVSGGEDGARHGPSLMPGGSFQAYSNVQDILKKVAAQVDDGPCVTYIG 180
Query: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239
EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN+ELA+IF EWN+GELESFL+EI
Sbjct: 181 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNSELADIFSEWNRGELESFLIEI 240
Query: 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
+ADIFKVKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELS+AAPTIAASLDCRYLSGLK
Sbjct: 241 SADIFKVKDEHGDGELVDKILDKTGMKGTGKWTVQQAAELSIAAPTIAASLDCRYLSGLK 300
Query: 300 EEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
+ERE AA+VLKEAG+ D V +V +DKK+LI+DVRQALYASKICSYAQGMNLLR+KS E
Sbjct: 301 DERESAAEVLKEAGMTDSVGSVRSGIDKKKLIEDVRQALYASKICSYAQGMNLLRAKSLE 360
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL+VDPEFAREMVQRQAAWRR
Sbjct: 361 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLLVDPEFAREMVQRQAAWRR 420
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
VVGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER+DR GS+HTEW
Sbjct: 421 VVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRQGSYHTEW 480
Query: 480 TKL 482
TKL
Sbjct: 481 TKL 483
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222639|ref|NP_176601.1| 6-phosphogluconate dehydrogenase [Arabidopsis thaliana] gi|75313449|sp|Q9SH69.1|6PGD1_ARATH RecName: Full=6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic gi|6692095|gb|AAF24560.1|AC007764_2 F22C12.5 [Arabidopsis thaliana] gi|28416567|gb|AAO42814.1| At1g64190 [Arabidopsis thaliana] gi|110743402|dbj|BAE99587.1| putative 6-phosphogluconate dehydrogenase [Arabidopsis thaliana] gi|332196086|gb|AEE34207.1| 6-phosphogluconate dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/482 (88%), Positives = 460/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDETLDRA EG LP++G
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRS+IILVKAG+PVDQTI A SE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A QKGLLYLGMGVSGGEEGAR+GPSLMPGGSF+AY+NI+DIL+KVAAQV+DGPCVTYIGE
Sbjct: 121 AEQKGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN ELAEIF EWN GELESFLVEIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELAEIFTEWNSGELESFLVEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+DIF+VKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK+
Sbjct: 241 SDIFRVKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKD 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AAKVL+EAGLK+E+ + +DKKRL+DDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 ERENAAKVLREAGLKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNP+LASLVVDPEFA+EMVQRQAAWRRV
Sbjct: 361 SWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLA+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER DRPG++HTEWT
Sbjct: 421 VGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297836953|ref|XP_002886358.1| 6-phosphogluconate dehydrogenase family protein [Arabidopsis lyrata subsp. lyrata] gi|297332199|gb|EFH62617.1| 6-phosphogluconate dehydrogenase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/482 (88%), Positives = 460/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDETLDRA EG LP++G
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRS+IILVKAG+PVDQTI A SE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A QKGLLYLGMGVSGGEEGAR+GPSLMPGGSF+AY+NI+DIL KVAAQV+DGPCVTYIGE
Sbjct: 121 AEQKGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILGKVAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGG SN ELAEIF EWN+GELESFLVEIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGFSNEELAEIFTEWNRGELESFLVEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+DIF+VKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK+
Sbjct: 241 SDIFRVKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKD 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AAKVL+EAGLK+E+ + +DKKRL+DDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 ERENAAKVLREAGLKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNP+LASLVVDPEFA+EMVQRQAAWRRV
Sbjct: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLA+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER DRPG++HTEWT
Sbjct: 421 VGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513305|ref|XP_003525354.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/483 (88%), Positives = 457/483 (94%), Gaps = 1/483 (0%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRT SKVD+T+DRA EG LPLTG
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTASKVDQTVDRARNEGSLPLTGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
YTPRDFVLS+QRPRSVIILVKAGSPVD TIAALS+H+ PGDCIIDGGNEWY NTERR++
Sbjct: 61 YTPRDFVLSLQRPRSVIILVKAGSPVDHTIAALSDHLDPGDCIIDGGNEWYENTERRMNL 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
+ KGLLYLGMGVSGGE+GARHGPSLMPGGS AY+N++DIL K+AAQV+DGPCVTYIGE
Sbjct: 121 VADKGLLYLGMGVSGGEDGARHGPSLMPGGSHHAYSNVQDILHKIAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN+ELAEIF EWN+GELESFL+EIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNSELAEIFVEWNRGELESFLIEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
ADIFKVKDE GEG LVDKILDKTGMKGTGKWTVQQAAELS+AAPTIAASLDCRYLSGLKE
Sbjct: 241 ADIFKVKDEDGEGFLVDKILDKTGMKGTGKWTVQQAAELSIAAPTIAASLDCRYLSGLKE 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVH-VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
ERE AA VLKEAGL DE+ V V VDKKRLIDDVRQALYASKICSYAQGMNLLR+KSNE
Sbjct: 301 ERESAAAVLKEAGLSDELGRVNVSGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSNE 360
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
KGWNLN GELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL+VDPEFAREMVQRQAAWRR
Sbjct: 361 KGWNLNLGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLIVDPEFAREMVQRQAAWRR 420
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
VVGLA+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER+DRPG+FHTEW
Sbjct: 421 VVGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRPGAFHTEW 480
Query: 480 TKL 482
TKL
Sbjct: 481 TKL 483
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464086|ref|XP_004149760.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/483 (88%), Positives = 462/483 (95%), Gaps = 1/483 (0%)
Query: 1 MEAS-ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG 59
MEAS ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET+DRAH EG LPL G
Sbjct: 1 MEASTALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVDRAHNEGNLPLFG 60
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH 119
Y PRDFVLSIQRPRSVIILVKAG PVDQTIAALS+H+ PGD IIDGGNEWY NTERRI
Sbjct: 61 QYNPRDFVLSIQRPRSVIILVKAGLPVDQTIAALSDHLEPGDAIIDGGNEWYENTERRIA 120
Query: 120 EASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179
+AS++G+LYLGMGVSGGE+GARHGPSLMPGGSF+AY+N++DIL+KVAAQVDDGPCVTYIG
Sbjct: 121 QASERGILYLGMGVSGGEDGARHGPSLMPGGSFQAYSNVQDILKKVAAQVDDGPCVTYIG 180
Query: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239
EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN+ELA+IF EWN+GELESFL+EI
Sbjct: 181 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNSELADIFSEWNRGELESFLIEI 240
Query: 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
+ADIFKVKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELS+AAPTIAASLDCRYLSGLK
Sbjct: 241 SADIFKVKDEHGDGELVDKILDKTGMKGTGKWTVQQAAELSIAAPTIAASLDCRYLSGLK 300
Query: 300 EEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
+ERE AA+VLKEAG+ D V +V +DKK+LI+DVRQALYASKICSYAQGMNLLR+KS E
Sbjct: 301 DERESAAEVLKEAGMTDSVGSVRSGIDKKKLIEDVRQALYASKICSYAQGMNLLRAKSLE 360
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL+VDPEFAREMVQRQAAWRR
Sbjct: 361 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLLVDPEFAREMVQRQAAWRR 420
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
VVGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER+DR GS+HTEW
Sbjct: 421 VVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRQGSYHTEW 480
Query: 480 TKL 482
TKL
Sbjct: 481 TKL 483
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 505 | ||||||
| TAIR|locus:2024542 | 487 | AT1G64190 [Arabidopsis thalian | 0.954 | 0.989 | 0.883 | 6.6e-232 | |
| TAIR|locus:2160422 | 487 | AT5G41670 [Arabidopsis thalian | 0.954 | 0.989 | 0.883 | 1.1e-231 | |
| UNIPROTKB|Q94KU2 | 537 | pgdP "6-phosphogluconate dehyd | 0.958 | 0.901 | 0.847 | 6e-222 | |
| UNIPROTKB|Q9LI00 | 480 | G6PGH1 "6-phosphogluconate deh | 0.934 | 0.983 | 0.768 | 3.9e-195 | |
| TAIR|locus:2074577 | 486 | AT3G02360 [Arabidopsis thalian | 0.938 | 0.975 | 0.756 | 8.1e-195 | |
| UNIPROTKB|Q2R480 | 508 | G6PGH2 "6-phosphogluconate deh | 0.938 | 0.933 | 0.761 | 2.1e-194 | |
| TIGR_CMR|BA_0164 | 469 | BA_0164 "6-phosphogluconate de | 0.916 | 0.987 | 0.507 | 4.2e-127 | |
| GENEDB_PFALCIPARUM|PF14_0520 | 468 | PF14_0520 "6-phosphogluconate | 0.920 | 0.993 | 0.515 | 9.9e-126 | |
| UNIPROTKB|Q8IKT2 | 468 | PF14_0520 "6-phosphogluconate | 0.920 | 0.993 | 0.515 | 9.9e-126 | |
| UNIPROTKB|P37756 | 468 | gnd "6-phosphogluconate dehydr | 0.912 | 0.985 | 0.515 | 1.2e-122 |
| TAIR|locus:2024542 AT1G64190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2237 (792.5 bits), Expect = 6.6e-232, P = 6.6e-232
Identities = 426/482 (88%), Positives = 460/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDETLDRA EG LP++G
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRS+IILVKAG+PVDQTI A SE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A QKGLLYLGMGVSGGEEGAR+GPSLMPGGSF+AY+NI+DIL+KVAAQV+DGPCVTYIGE
Sbjct: 121 AEQKGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN ELAEIF EWN GELESFLVEIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELAEIFTEWNSGELESFLVEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+DIF+VKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK+
Sbjct: 241 SDIFRVKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKD 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AAKVL+EAGLK+E+ + +DKKRL+DDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 ERENAAKVLREAGLKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNP+LASLVVDPEFA+EMVQRQAAWRRV
Sbjct: 361 SWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLA+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER DRPG++HTEWT
Sbjct: 421 VGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
|
| TAIR|locus:2160422 AT5G41670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2235 (791.8 bits), Expect = 1.1e-231, P = 1.1e-231
Identities = 426/482 (88%), Positives = 461/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME+ ALSRIGLAGLAVMGQNLALN+A+KGFPISVYNRTTSKVDETLDRA EG+LP+ G
Sbjct: 1 MESVALSRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLDRASNEGKLPVAGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRSVIILVKAG+PVDQTI+ALSE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A +KGLLYLGMGVSGGEEGAR+GPSLMPGGSF AYNN++DIL+KVAAQV+DGPCVTYIGE
Sbjct: 121 AEKKGLLYLGMGVSGGEEGARNGPSLMPGGSFTAYNNVKDILEKVAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN ELAEIF EWN+GELESFLVEIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNDELAEIFTEWNRGELESFLVEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+DIF+VKD+YG+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK+
Sbjct: 241 SDIFRVKDDYGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKD 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AAKVL+EAGLK+++ + VDKKRLIDDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 ERENAAKVLEEAGLKEDIGSASRGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSLEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GW+LN GE+ARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP+FA+EMVQRQAAWRRV
Sbjct: 361 GWDLNLGEMARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPDFAKEMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER DRPG++HTEWT
Sbjct: 421 VGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
|
| UNIPROTKB|Q94KU2 pgdP "6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 2143 (759.4 bits), Expect = 6.0e-222, P = 6.0e-222
Identities = 410/484 (84%), Positives = 443/484 (91%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A S+IGL GLAVMGQNLALN+AEKGFPISVYNRT SKVDETLDRA EG LPL+GHYTPR
Sbjct: 47 AASQIGLVGLAVMGQNLALNIAEKGFPISVYNRTASKVDETLDRAKSEGDLPLSGHYTPR 106
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
DFVLSI+RPRS++ILVKAGSPVDQTIA+L+ M PGD IIDGGNEWY NTERR+ +A
Sbjct: 107 DFVLSIERPRSIVILVKAGSPVDQTIASLASFMEPGDTIIDGGNEWYQNTERRLSDAHSN 166
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 184
GLLYLGMGVSGGEEGAR GPSLMPGG F+AY+NI+ IL+KVAAQVDDGPCVTYIGEGGSG
Sbjct: 167 GLLYLGMGVSGGEEGARFGPSLMPGGDFQAYDNIQHILKKVAAQVDDGPCVTYIGEGGSG 226
Query: 185 NFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIF 244
NFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN EL +IFDEWNK ELESFLVEITADIF
Sbjct: 227 NFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELGQIFDEWNKSELESFLVEITADIF 286
Query: 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREK 304
KVKD+ +G LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE
Sbjct: 287 KVKDDLADGGLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREN 346
Query: 305 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNL 364
AAK+L+ AG+K+EV + VDKKRLIDDVRQALYASKICSYAQGMNLLR+KS E GW+L
Sbjct: 347 AAKILEAAGMKEEVNAIRGGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSAEMGWDL 406
Query: 365 NFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 424
N GELARIWKGGCIIRAVFLD IK+AYQRNPNLASLVVDPEFA+EMVQRQAAWRRVVGLA
Sbjct: 407 NLGELARIWKGGCIIRAVFLDSIKQAYQRNPNLASLVVDPEFAKEMVQRQAAWRRVVGLA 466
Query: 425 ISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKLPA 484
+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRD FGAHTYER+D PGS+HTEW+KL
Sbjct: 467 VSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDLPGSYHTEWSKLAR 526
Query: 485 RLVP 488
+ P
Sbjct: 527 KSDP 530
|
|
| UNIPROTKB|Q9LI00 G6PGH1 "6-phosphogluconate dehydrogenase, decarboxylating 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1890 (670.4 bits), Expect = 3.9e-195, P = 3.9e-195
Identities = 368/479 (76%), Positives = 416/479 (86%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A++RIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET+ RA EG LP+ G + P
Sbjct: 2 AVTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDPA 61
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
FV SIQ+PR VI+LVKAG+PVDQTIA L+ H+ GDCIIDGGNEWY NTERR ++
Sbjct: 62 SFVNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEER 121
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPCVTYIGEGGS 183
GLLYLGMGVSGGEEGAR+GPSLMPGGSFEAY I DIL KVAAQV D GPCVTYIG+GGS
Sbjct: 122 GLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGS 181
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243
GNFVKMVHNGIEYGDMQLISEAYDVLK VG L+N+EL ++F EWNKGEL SFL+EITADI
Sbjct: 182 GNFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLSFLIEITADI 241
Query: 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE 303
F +KD+ G G LVDK+LDKTGMKGTGKWTVQQAAELSVAAPTI ASLD R+LSGLK+ER
Sbjct: 242 FSIKDDQGSGHLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIEASLDSRFLSGLKDERV 301
Query: 304 KAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 363
+AAKV + G D N+ V DK +LI+DVRQALYASKICSYAQGMN++++KS EKGW+
Sbjct: 302 EAAKVFQ--G--DFSSNLPV--DKAQLIEDVRQALYASKICSYAQGMNIIKAKSMEKGWS 355
Query: 364 LNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423
LN GELARIWKGGCIIRA+FLDRIKKAY RN +LA+L+VDPEFA+E++ RQAAWRRVV L
Sbjct: 356 LNLGELARIWKGGCIIRAIFLDRIKKAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVVCL 415
Query: 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
AI+ G+STPGM ASL+YFD+YRR RLPANLVQAQRD FGAHTYER+D PGSFHTEW K+
Sbjct: 416 AINNGVSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKI 474
|
|
| TAIR|locus:2074577 AT3G02360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1887 (669.3 bits), Expect = 8.1e-195, P = 8.1e-195
Identities = 361/477 (75%), Positives = 412/477 (86%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+RIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET++RA +EG LPL G + P F
Sbjct: 6 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFHDPESF 65
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
V SIQ+PR +I+LVKAGSPVDQTI LS ++ GDCI+DGGNEWY NTERR ++ G
Sbjct: 66 VKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAVAENGF 125
Query: 127 LYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPCVTYIGEGGSGN 185
LYLGMGVSGGEEGAR+GPS+MPGGS+EAY NI DI+ KVAAQV D GPCVTYIG+GGSGN
Sbjct: 126 LYLGMGVSGGEEGARNGPSMMPGGSYEAYKNIEDIVLKVAAQVRDSGPCVTYIGKGGSGN 185
Query: 186 FVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFK 245
FVKMVHNGIEYGDMQLI+EAYDVLK VG LSN EL +F +WNKGELESFLVEITADIF
Sbjct: 186 FVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELHSVFSDWNKGELESFLVEITADIFG 245
Query: 246 VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKA 305
+KD+ G+G LVDK+LDKTGMKGTGKWTVQQAAELSV APTI +SLD R+LSGLK+ER +A
Sbjct: 246 IKDDKGDGHLVDKVLDKTGMKGTGKWTVQQAAELSVPAPTIESSLDARFLSGLKDERVQA 305
Query: 306 AKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLN 365
AKV K G D + + VDKK+L+DDVR+ALYASKICSYAQGMNL+R+KS EKGW L
Sbjct: 306 AKVFKAGGFGDILTDQ--KVDKKQLVDDVRKALYASKICSYAQGMNLIRAKSIEKGWGLK 363
Query: 366 FGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAI 425
GELARIWKGGCIIRA+FLDRIK+AY RN LA+L+VDPEFA+E+++RQ+AWRRVV LAI
Sbjct: 364 LGELARIWKGGCIIRAIFLDRIKQAYDRNAELANLLVDPEFAKEIIERQSAWRRVVCLAI 423
Query: 426 SAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
++GISTPGM ASL+YFD+YRR RLPANLVQAQRD FGAHTYER D GSFHTEW K+
Sbjct: 424 NSGISTPGMSASLAYFDSYRRERLPANLVQAQRDYFGAHTYERTDVEGSFHTEWFKI 480
|
|
| UNIPROTKB|Q2R480 G6PGH2 "6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1883 (667.9 bits), Expect = 2.1e-194, P = 2.1e-194
Identities = 364/478 (76%), Positives = 408/478 (85%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
RIGLAGLA MGQNLALN+AEKGFPISVYNRT +KVD T+ RA EG LP+ GH PR FV
Sbjct: 23 RIGLAGLATMGQNLALNIAEKGFPISVYNRTAAKVDATVSRAEAEGALPVLGHRDPRGFV 82
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
LS+ RPR+V++LV+AG VD TI AL ++ GD I+DGGNEWY NTERRI EA+ +G+L
Sbjct: 83 LSLSRPRTVVLLVQAGRAVDATIDALVPYLDAGDAIVDGGNEWYQNTERRIEEAAARGIL 142
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187
YLGMGVSGGEEGAR+GPSLMPGG +AYNNIRDIL+K AAQ +DG CVT++G GG+GNFV
Sbjct: 143 YLGMGVSGGEEGARNGPSLMPGGHIDAYNNIRDILEKAAAQTEDGACVTFVGPGGAGNFV 202
Query: 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVK 247
KMVHNGIEYGDMQLI+EAYDVL+ VGGLSN+E+A++F EWN+GELESFLVEITADIF V
Sbjct: 203 KMVHNGIEYGDMQLIAEAYDVLRRVGGLSNSEIADVFAEWNRGELESFLVEITADIFTVA 262
Query: 248 DEY---GEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREK 304
D G G LVDKILDKTGMKGTGKWTVQQAAEL++AAPTIAASLD RYLSGLK+ER
Sbjct: 263 DPLDGSGGGGLVDKILDKTGMKGTGKWTVQQAAELAIAAPTIAASLDGRYLSGLKDERVA 322
Query: 305 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNL 364
AA VL+ G+ + ++VDKK L+D VRQALYASKICSYAQGMNLLR+KS EKGWNL
Sbjct: 323 AAGVLEAEGMPSGLLET-INVDKKMLVDRVRQALYASKICSYAQGMNLLRAKSVEKGWNL 381
Query: 365 NFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 424
N ELARIWKGGCIIRA FLDRIKKAY RNP LA+L+VD EFAREMVQRQ AWR VV A
Sbjct: 382 NLAELARIWKGGCIIRAKFLDRIKKAYDRNPELANLIVDREFAREMVQRQNAWRWVVARA 441
Query: 425 ISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
+ AGISTPGM ASLSYFDTYR +RLPANL+QAQRDLFGAHTYERIDRPGSFHTEWTKL
Sbjct: 442 VEAGISTPGMSASLSYFDTYRCSRLPANLIQAQRDLFGAHTYERIDRPGSFHTEWTKL 499
|
|
| TIGR_CMR|BA_0164 BA_0164 "6-phosphogluconate dehydrogenase, decarboxylating" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1248 (444.4 bits), Expect = 4.2e-127, P = 4.2e-127
Identities = 240/473 (50%), Positives = 337/473 (71%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG+ G+ VMG++LALN KG+ +++Y+ + KVDET++ G+ L G + +FV
Sbjct: 5 QIGVVGVGVMGKSLALNFESKGYSVALYDISKEKVDETIEE--NRGK-NLVGTHIVEEFV 61
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
S++ PR ++++V AG D+ I +L H+ GD +IDGGN ++++T RR +++G+
Sbjct: 62 NSLESPRKILLMVNAGEITDKAIDSLVPHLDKGDILIDGGNTYFVDTIRRNKRLAEEGIN 121
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187
++G GVSGGEEGA GPS+MPGG +AY ++D+L+ ++A+V++ PC +YIG G+G++V
Sbjct: 122 FIGAGVSGGEEGALKGPSIMPGGQKDAYEKVKDMLENISAKVNNEPCCSYIGPNGAGHYV 181
Query: 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVK 247
KMVHNGIEYGDMQLI EAY LK L+ E EIF EWNKGEL S+L+EITADIFK K
Sbjct: 182 KMVHNGIEYGDMQLICEAYFFLKQTLDLTAEEFHEIFAEWNKGELNSYLIEITADIFKKK 241
Query: 248 DEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAK 307
DE LVD ILD G KGTGKWT Q A +L ++ P I S+ R +S LKEER A+K
Sbjct: 242 DEETGKPLVDVILDTAGQKGTGKWTSQSALDLGISLPIITESVFARCISALKEERVNASK 301
Query: 308 VLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFG 367
VL +G KD+ +GV +K LI+ VRQALY SKICSYAQG L++ S E WNL+FG
Sbjct: 302 VL--SGPKDKTA-IGV--EKAELIEAVRQALYMSKICSYAQGFTQLKAASEEYNWNLDFG 356
Query: 368 ELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQR-QAAWRRVVGLAIS 426
++ +W+GGCIIRA FL IK+AY+ N +L +L++DP F +E+V+ Q R+++ +A+
Sbjct: 357 SISMLWRGGCIIRAAFLQNIKEAYETNTDLPNLLLDPYF-KEIVESYQGGLRQIISMAVQ 415
Query: 427 AGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
GI P A++SY+D+YR A+LPANL+QAQRD FGAHTY+R+D+ G+FHT+W
Sbjct: 416 QGIPIPAFSAAISYYDSYRTAKLPANLLQAQRDYFGAHTYKRVDKEGTFHTKW 468
|
|
| GENEDB_PFALCIPARUM|PF14_0520 PF14_0520 "6-phosphogluconate dehydrogenase, decarboxylating, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 243/471 (51%), Positives = 320/471 (67%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
IGL GLAVMGQNL+LN++ KGF I VYNRT + +ET+ RA +E L + G+ T + +
Sbjct: 4 IGLIGLAVMGQNLSLNISSKGFKIGVYNRTYERTEETMKRA-KEENLVVYGYKTVEELIN 62
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
++++PR VI+L+KAG VD+ I+ + +H GD IIDGGNEWY+N+ERRI +K + Y
Sbjct: 63 NLKKPRKVILLIKAGPAVDENISNILKHFEKGDIIIDGGNEWYINSERRIKLCKEKDVEY 122
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK 188
L MGVSGGE GAR+G S MPGGS AY+ +++IL+K +AQV + PCVTYIG G SGN+VK
Sbjct: 123 LAMGVSGGEAGARYGCSFMPGGSKYAYDCVKEILEKCSAQVGNSPCVTYIGPGSSGNYVK 182
Query: 189 MVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKD 248
MVHNGIEYGDMQLISE+Y ++KH+ N +L+E+F++WN+G L S+L+EITA+I KD
Sbjct: 183 MVHNGIEYGDMQLISESYVIMKHILKYDNQKLSEVFNKWNEGILNSYLIEITANILAKKD 242
Query: 249 EYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKV 308
+ LVD ILD G KGTGKWT+ +A E + PT+ A+LD R +S KE R KA
Sbjct: 243 DLTNNYLVDMILDIAGAKGTGKWTMLEATERGIPCPTMCAALDARNISVFKELRTKAESN 302
Query: 309 LKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGE 368
KD + + + D +D+ ALY KI SY QG+ LL+ S E W LN GE
Sbjct: 303 FN----KDNIL-IDPNEDLNDFENDLLNALYCCKIISYTQGLFLLKQVSEEMNWKLNLGE 357
Query: 369 LARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAG 428
+ARIW+GGCIIRAVFLDRI AY+ N L L +D EF+ ++ + + R++V +A
Sbjct: 358 IARIWRGGCIIRAVFLDRIANAYKNNEKLELLFLDNEFSDDIKNKLPSLRKIVLMATKYS 417
Query: 429 ISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
I P ASL+YF LP NLVQAQRD FG+HTY R DR G++HT W
Sbjct: 418 IPIPAFSASLAYFQMVTSQNLPLNLVQAQRDYFGSHTYRRTDREGNYHTLW 468
|
|
| UNIPROTKB|Q8IKT2 PF14_0520 "6-phosphogluconate dehydrogenase, decarboxylating" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 243/471 (51%), Positives = 320/471 (67%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
IGL GLAVMGQNL+LN++ KGF I VYNRT + +ET+ RA +E L + G+ T + +
Sbjct: 4 IGLIGLAVMGQNLSLNISSKGFKIGVYNRTYERTEETMKRA-KEENLVVYGYKTVEELIN 62
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
++++PR VI+L+KAG VD+ I+ + +H GD IIDGGNEWY+N+ERRI +K + Y
Sbjct: 63 NLKKPRKVILLIKAGPAVDENISNILKHFEKGDIIIDGGNEWYINSERRIKLCKEKDVEY 122
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK 188
L MGVSGGE GAR+G S MPGGS AY+ +++IL+K +AQV + PCVTYIG G SGN+VK
Sbjct: 123 LAMGVSGGEAGARYGCSFMPGGSKYAYDCVKEILEKCSAQVGNSPCVTYIGPGSSGNYVK 182
Query: 189 MVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKD 248
MVHNGIEYGDMQLISE+Y ++KH+ N +L+E+F++WN+G L S+L+EITA+I KD
Sbjct: 183 MVHNGIEYGDMQLISESYVIMKHILKYDNQKLSEVFNKWNEGILNSYLIEITANILAKKD 242
Query: 249 EYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKV 308
+ LVD ILD G KGTGKWT+ +A E + PT+ A+LD R +S KE R KA
Sbjct: 243 DLTNNYLVDMILDIAGAKGTGKWTMLEATERGIPCPTMCAALDARNISVFKELRTKAESN 302
Query: 309 LKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGE 368
KD + + + D +D+ ALY KI SY QG+ LL+ S E W LN GE
Sbjct: 303 FN----KDNIL-IDPNEDLNDFENDLLNALYCCKIISYTQGLFLLKQVSEEMNWKLNLGE 357
Query: 369 LARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAG 428
+ARIW+GGCIIRAVFLDRI AY+ N L L +D EF+ ++ + + R++V +A
Sbjct: 358 IARIWRGGCIIRAVFLDRIANAYKNNEKLELLFLDNEFSDDIKNKLPSLRKIVLMATKYS 417
Query: 429 ISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
I P ASL+YF LP NLVQAQRD FG+HTY R DR G++HT W
Sbjct: 418 IPIPAFSASLAYFQMVTSQNLPLNLVQAQRDYFGSHTYRRTDREGNYHTLW 468
|
|
| UNIPROTKB|P37756 gnd "6-phosphogluconate dehydrogenase, decarboxylating" [Shigella flexneri (taxid:623)] | Back alignment and assigned GO terms |
|---|
Score = 1206 (429.6 bits), Expect = 1.2e-122, P = 1.2e-122
Identities = 244/473 (51%), Positives = 324/473 (68%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG+ G+AVMG+NLALN+ +G+ +S++NR+ K +E + A G+ L +YT ++FV
Sbjct: 5 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVI--AENPGK-KLAPYYTVKEFV 61
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
S++ PR ++++VKAG+ D I +L ++ GD IIDGGN ++ +T RR E S +G
Sbjct: 62 ESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 121
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 186
++G GVSGGEEGA GPS+MPGG EAY + IL K+AA +DG PCVTYIG G+G++
Sbjct: 122 FIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHY 181
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246
VKMVHNGIEYGDMQLI+EAY +LK LSN ELA+ F EWN GEL S+L++IT DIF
Sbjct: 182 VKMVHNGIEYGDMQLIAEAYSLLKGGLNLSNEELAQTFTEWNNGELSSYLIDITKDIFTK 241
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
KDE G LVD ILD+ KGTGKWT Q A +L I S+ RY+S LK++R A+
Sbjct: 242 KDEDGN-YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS 300
Query: 307 KVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNF 366
KVL +G + Q+ G DK I+ VR ALY KI SYAQG + LR+ S E W+LN+
Sbjct: 301 KVL--SG--PQAQSAG---DKAEFIEKVRSALYLGKIVSYAQGFSQLRAASEEYNWDLNY 353
Query: 367 GELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAIS 426
GE+A+I++ GCIIRA FL +I AY NP +A+L++ P F + Q A R VV A+
Sbjct: 354 GEIAKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQ 413
Query: 427 AGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
GI P A+++Y+D+YR A LPANL+QAQRD FGAHTY+RID+ G FHTEW
Sbjct: 414 NGIPVPTFAAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW 466
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q7VMX4 | 6PGD_HAEDU | 1, ., 1, ., 1, ., 4, 4 | 0.4821 | 0.9148 | 0.9545 | yes | no |
| P96789 | 6PGD_LACLM | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9207 | 0.9851 | yes | no |
| Q8TA03 | 6PGD_DICDI | 1, ., 1, ., 1, ., 4, 4 | 0.4905 | 0.9267 | 0.9492 | yes | no |
| P41580 | 6PGD_SHISO | 1, ., 1, ., 1, ., 4, 4 | 0.5109 | 0.8792 | 0.9977 | yes | no |
| Q6GGI7 | 6PGD_STAAR | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9128 | 0.9850 | yes | no |
| P41582 | 6PGD_CITDI | 1, ., 1, ., 1, ., 4, 4 | 0.5142 | 0.8772 | 0.9955 | yes | no |
| Q9LI00 | 6PGD1_ORYSJ | 1, ., 1, ., 1, ., 4, 4 | 0.7661 | 0.9346 | 0.9833 | yes | no |
| P53319 | 6PGD2_YEAST | 1, ., 1, ., 1, ., 4, 4 | 0.4873 | 0.9227 | 0.9471 | yes | no |
| P70718 | 6PGD_AGGAC | 1, ., 1, ., 1, ., 4, 4 | 0.4905 | 0.9148 | 0.9545 | yes | no |
| P57208 | 6PGD_BUCAI | 1, ., 1, ., 1, ., 4, 4 | 0.4556 | 0.9188 | 0.9914 | yes | no |
| P85968 | 6PGD_RAT | 1, ., 1, ., 1, ., 4, 4 | 0.5062 | 0.9247 | 0.9668 | yes | no |
| Q9FFR3 | 6PGD2_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.8838 | 0.9544 | 0.9897 | no | no |
| P00350 | 6PGD_ECOLI | 1, ., 1, ., 1, ., 4, 4 | 0.5116 | 0.9128 | 0.9850 | N/A | no |
| Q931R3 | 6PGD_STAAM | 1, ., 1, ., 1, ., 4, 4 | 0.4947 | 0.9168 | 0.9893 | yes | no |
| Q94KU1 | 6PGD1_SPIOL | 1, ., 1, ., 1, ., 4, 4 | 0.7710 | 0.9386 | 0.9813 | N/A | no |
| Q94KU2 | 6PGD2_SPIOL | 1, ., 1, ., 1, ., 4, 4 | 0.8471 | 0.9584 | 0.9013 | N/A | no |
| P63335 | 6PGD_STAAW | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9128 | 0.9850 | yes | no |
| P63334 | 6PGD_STAAN | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9128 | 0.9850 | yes | no |
| Q5HP42 | 6PGD_STAEQ | 1, ., 1, ., 1, ., 4, 4 | 0.5031 | 0.9168 | 0.9893 | yes | no |
| P41575 | 6PGD_RAOPL | 1, ., 1, ., 1, ., 4, 4 | 0.5032 | 0.8772 | 0.9955 | N/A | no |
| P52209 | 6PGD_HUMAN | 1, ., 1, ., 1, ., 4, 4 | 0.5041 | 0.9247 | 0.9668 | yes | no |
| P52208 | 6PGD_SYNY3 | 1, ., 1, ., 1, ., 4, 4 | 0.5366 | 0.9148 | 0.9585 | N/A | no |
| P37754 | 6PGD9_ECOLX | 1, ., 1, ., 1, ., 4, 4 | 0.5073 | 0.9128 | 0.9850 | yes | no |
| P37756 | 6PGD_SHIFL | 1, ., 1, ., 1, ., 4, 4 | 0.5137 | 0.9128 | 0.9850 | yes | no |
| P41574 | 6PGD_ESCVU | 1, ., 1, ., 1, ., 4, 4 | 0.5098 | 0.8772 | 0.9955 | N/A | no |
| Q9SH69 | 6PGD1_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.8838 | 0.9544 | 0.9897 | yes | no |
| P41581 | 6PGD_CITAM | 1, ., 1, ., 1, ., 4, 4 | 0.5098 | 0.8772 | 0.9955 | N/A | no |
| Q9DCD0 | 6PGD_MOUSE | 1, ., 1, ., 1, ., 4, 4 | 0.5104 | 0.9247 | 0.9668 | yes | no |
| P80859 | 6PGD2_BACSU | 1, ., 1, ., 1, ., 4, 4 | 0.5253 | 0.9207 | 0.9914 | yes | no |
| Q9FWA3 | 6GPD3_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.7568 | 0.9386 | 0.9753 | no | no |
| P41577 | 6PGD_RAOTE | 1, ., 1, ., 1, ., 4, 4 | 0.5054 | 0.8772 | 0.9955 | N/A | no |
| P41576 | 6PGD_KLEPN | 1, ., 1, ., 1, ., 4, 4 | 0.5095 | 0.9128 | 0.9850 | yes | no |
| P21577 | 6PGD_SYNE7 | 1, ., 1, ., 1, ., 4, 4 | 0.5669 | 0.9227 | 0.9893 | yes | no |
| P41573 | 6PGD_DROSI | 1, ., 1, ., 1, ., 4, 4 | 0.5020 | 0.9227 | 0.9688 | N/A | no |
| Q9ZHD9 | 6PGD_BUCAP | 1, ., 1, ., 1, ., 4, 4 | 0.4566 | 0.9148 | 0.9767 | yes | no |
| Q9CHU6 | 6PGD_LACLA | 1, ., 1, ., 1, ., 4, 4 | 0.5031 | 0.9207 | 0.9851 | yes | no |
| P41572 | 6PGD_DROME | 1, ., 1, ., 1, ., 4, 4 | 0.5020 | 0.9227 | 0.9688 | yes | no |
| P41579 | 6PGD_SHIDY | 1, ., 1, ., 1, ., 4, 4 | 0.5109 | 0.8792 | 0.9977 | yes | no |
| P41578 | 6PGD_SHIBO | 1, ., 1, ., 1, ., 4, 4 | 0.5087 | 0.8792 | 0.9977 | yes | no |
| P14062 | 6PGD_SALTY | 1, ., 1, ., 1, ., 4, 4 | 0.5137 | 0.9128 | 0.9850 | yes | no |
| Q6G954 | 6PGD_STAAS | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9128 | 0.9850 | yes | no |
| Q2R480 | 6PGD2_ORYSJ | 1, ., 1, ., 1, ., 4, 4 | 0.7615 | 0.9386 | 0.9330 | no | no |
| Q8CP47 | 6PGD_STAES | 1, ., 1, ., 1, ., 4, 4 | 0.5031 | 0.9168 | 0.9893 | yes | no |
| P00349 | 6PGD_SHEEP | 1, ., 1, ., 1, ., 4, 4 | 0.5104 | 0.9247 | 0.9668 | N/A | no |
| Q17761 | 6PGD_CAEEL | 1, ., 1, ., 1, ., 4, 4 | 0.4772 | 0.9425 | 0.9834 | yes | no |
| Q5HFR2 | 6PGD_STAAC | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9128 | 0.9850 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 505 | |||
| PLN02350 | 493 | PLN02350, PLN02350, phosphogluconate dehydrogenase | 0.0 | |
| PRK09287 | 459 | PRK09287, PRK09287, 6-phosphogluconate dehydrogena | 0.0 | |
| COG0362 | 473 | COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca | 0.0 | |
| PTZ00142 | 470 | PTZ00142, PTZ00142, 6-phosphogluconate dehydrogena | 0.0 | |
| TIGR00873 | 467 | TIGR00873, gnd, 6-phosphogluconate dehydrogenase ( | 0.0 | |
| pfam00393 | 290 | pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, | 0.0 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 8e-76 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 7e-61 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 2e-57 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 4e-57 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 3e-49 | |
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 2e-19 | |
| PRK11559 | 296 | PRK11559, garR, tartronate semialdehyde reductase; | 4e-11 | |
| TIGR01505 | 291 | TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona | 2e-10 | |
| PRK15059 | 292 | PRK15059, PRK15059, tartronate semialdehyde reduct | 2e-05 | |
| TIGR01692 | 288 | TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen | 8e-05 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 2e-04 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 0.001 | |
| PRK15461 | 296 | PRK15461, PRK15461, NADH-dependent gamma-hydroxybu | 0.001 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 0.002 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 0.002 |
| >gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 1029 bits (2662), Expect = 0.0
Identities = 414/482 (85%), Positives = 444/482 (92%), Gaps = 1/482 (0%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
M ++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET++RA +EG LPL G
Sbjct: 1 MASAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGF 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
P DFVLSIQ+PRSVIILVKAG+PVDQTI ALSE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 KDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A++KGLLYLGMGVSGGEEGAR+GPSLMPGGSFEAY NI DIL+KVAAQVDDGPCVTYIG
Sbjct: 121 AAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDILEKVAAQVDDGPCVTYIGP 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GG+GNFVKMVHNGIEYGDMQLISEAYDVLK VGGLSN ELAE+F EWNKGELESFL+EIT
Sbjct: 181 GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
ADIF VKD+ G+G LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLD RYLSGLKE
Sbjct: 241 ADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKE 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ER AAKV KEAGL+D + VDKK+LIDDVRQALYASKICSYAQGMNL+R+KS EK
Sbjct: 301 ERVAAAKVFKEAGLEDILSADSG-VDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEK 359
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GWNLN GELARIWKGGCIIRAVFLDRIKKAY RNP+LASL+VDPEFA+EMV+RQAAWRRV
Sbjct: 360 GWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLASLLVDPEFAKEMVERQAAWRRV 419
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
V LAI+AGISTPGM ASL+YFDTYRRARLPANLVQAQRD FGAHTYER+DRPGSFHTEWT
Sbjct: 420 VSLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEWT 479
Query: 481 KL 482
KL
Sbjct: 480 KL 481
|
Length = 493 |
| >gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 788 bits (2037), Expect = 0.0
Identities = 265/466 (56%), Positives = 335/466 (71%), Gaps = 10/466 (2%)
Query: 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76
MG+NLALN+A G+ ++VYNRT K DE L + ++ YT +FV S+++PR +
Sbjct: 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKI--VPAYTLEEFVASLEKPRKI 58
Query: 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136
+++VKAG+PVD I L + GD IIDGGN Y +T RR E ++KG+ ++GMGVSGG
Sbjct: 59 LLMVKAGAPVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGG 118
Query: 137 EEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNFVKMVHNGIE 195
EEGA HGPS+MPGG EAY + IL+K+AA+V+DG PCVTYIG G+G++VKMVHNGIE
Sbjct: 119 EEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIE 178
Query: 196 YGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGEL 255
YGDMQLI+EAYD+LK GLS E+A++F EWNKGEL S+L+EITADI + KDE L
Sbjct: 179 YGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGKPL 238
Query: 256 VDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLK 315
VD ILDK G KGTGKWT Q A +L V I ++ RYLS LK++R A+KVL K
Sbjct: 239 VDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPAAK 298
Query: 316 DEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKG 375
E DK I+DVRQALYASKI SYAQG LLR+ S E GW+L+ GE+ARIW+G
Sbjct: 299 FEG-------DKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRG 351
Query: 376 GCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMC 435
GCIIRA FL +I AY+ NP+LA+L++DP F + + Q A RRVV LA+ AGI P
Sbjct: 352 GCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFS 411
Query: 436 ASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481
++LSY+D+YR ARLPANL+QAQRD FGAHTYER D+ G FHTEW++
Sbjct: 412 SALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEWSE 457
|
Length = 459 |
| >gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 743 bits (1921), Expect = 0.0
Identities = 271/472 (57%), Positives = 340/472 (72%), Gaps = 9/472 (1%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
IG+ GLAVMG NLALN+A+ G+ ++VYNRTT K DE L + + Y+ +FV
Sbjct: 6 IGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNI--VPAYSIEEFVA 63
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
S+++PR ++++VKAG+PVD I L + GD IIDGGN Y +T RR E S+KG+L+
Sbjct: 64 SLEKPRKILLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILF 123
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK 188
+GMGVSGGEEGARHGPS+MPGG EAY + IL K+AA+VD PC T+IG G+G+FVK
Sbjct: 124 VGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVK 183
Query: 189 MVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKD 248
MVHNGIEYGDMQLI+EAYD+LK GLS E+AE+F+EWNKGEL+S+L+EITADI + KD
Sbjct: 184 MVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADILRKKD 243
Query: 249 EYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKV 308
E G LVDKILDK G KGTGKWTV A +L V I ++ RYLS LK+ER A+KV
Sbjct: 244 EEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASKV 303
Query: 309 LKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGE 368
L ++ G DK+ I+DVRQALYASKI SYAQG LLR+ S E GW+LN GE
Sbjct: 304 LA----GPKLGEPG---DKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGE 356
Query: 369 LARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAG 428
+A IW+GGCIIR+ FLD+I A+ NP LA+L++ P F + + Q + RRVV A+ AG
Sbjct: 357 IALIWRGGCIIRSKFLDKITDAFDENPELANLLLAPYFKSILEEYQQSLRRVVAYAVEAG 416
Query: 429 ISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
I P ++LSY+D+YR ARLPANL+QAQRD FGAHTYER D+ G FHT WT
Sbjct: 417 IPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWT 468
|
Length = 473 |
| >gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 697 bits (1800), Expect = 0.0
Identities = 283/474 (59%), Positives = 357/474 (75%), Gaps = 5/474 (1%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
S IGL GLAVMGQNLALN+A +GF ISVYNRT K +E + +A +EG + G++T +
Sbjct: 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKA-KEGNTRVKGYHTLEEL 60
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
V S+++PR VI+L+KAG VD+TI L + GD IIDGGNEWYLNTERRI +KG+
Sbjct: 61 VNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGI 120
Query: 127 LYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 186
LYLGMGVSGGEEGAR+GPSLMPGG+ EAY++++DIL+K +A+V D PCVTY+G G SG++
Sbjct: 121 LYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHY 180
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246
VKMVHNGIEYGDMQLISE+Y ++KH+ G+SN EL+E+F++WN+G L S+L+EITA I
Sbjct: 181 VKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKILAK 240
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
KD+ GE LVDKILD G KGTGKWTVQ+A E + PT+AAS+D R +S LKEER KA+
Sbjct: 241 KDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKAS 300
Query: 307 KVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNF 366
L ++ + DKK IDD++ ALY SKI SY QG L++ S E GWNLN
Sbjct: 301 SHLAGPNPANKTET----EDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNL 356
Query: 367 GELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAIS 426
GE+ARIW+GGCIIRAVFLDRIK A+++NP L L +DP+F E+ +Q +WR+VV +A
Sbjct: 357 GEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDFNDELKNKQPSWRKVVSMATK 416
Query: 427 AGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
GI TP ASL+Y+ YR LPANLVQAQRD FGAHTY+R+DRPG+FHT W
Sbjct: 417 NGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470
|
Length = 470 |
| >gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 682 bits (1761), Expect = 0.0
Identities = 277/474 (58%), Positives = 337/474 (71%), Gaps = 11/474 (2%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
IG+ GLAVMG NLALN+A+ GF +SVYNRT K DE L H +G+ + G Y+ +FV
Sbjct: 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFL-AEHAKGK-KIVGAYSIEEFVQ 59
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
S++RPR ++++VKAG+PVD I L + GD IIDGGN Y +TERR E KG+L+
Sbjct: 60 SLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILF 119
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK 188
+G GVSGGEEGAR GPS+MPGGS EA+ + I QK+AA+VD PC T+IG G+G++VK
Sbjct: 120 VGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVK 179
Query: 189 MVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKD 248
MVHNGIEYGDMQLI EAYD+LK GLSN E+AE+F EWN GEL+S+L+EITADI K KD
Sbjct: 180 MVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILKKKD 239
Query: 249 EYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKV 308
E G+ LVDKILD G KGTGKWT A +L V I S+ RYLS LKEER A+KV
Sbjct: 240 EDGK-PLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKV 298
Query: 309 LKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGE 368
L + VDK+ I+DVRQALYASKI SYAQG LLR S E GW+LN GE
Sbjct: 299 LSGPLAPEP------AVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGE 352
Query: 369 LARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAG 428
+A IW+GGCIIR+ FLD+I KA+ NP+LA+L++ P F + Q+ WRRVV LAI G
Sbjct: 353 IALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYG 412
Query: 429 ISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGS--FHTEWT 480
I P A+LS++D YR ARLPANL+QAQRD FGAHTYER D+P FHT WT
Sbjct: 413 IPVPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWT 466
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason [Energy metabolism, Pentose phosphate pathway]. Length = 467 |
| >gnl|CDD|215895 pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, C-terminal domain | Back alignment and domain information |
|---|
Score = 532 bits (1373), Expect = 0.0
Identities = 189/297 (63%), Positives = 228/297 (76%), Gaps = 7/297 (2%)
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243
G++VKMVHNGIEYGDMQLI+EAYD+LK V GLSN E+A++F+EWNKGEL+S+L+EITADI
Sbjct: 1 GHYVKMVHNGIEYGDMQLIAEAYDLLKTVLGLSNDEIADVFEEWNKGELDSYLIEITADI 60
Query: 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE 303
+ KDE G+ LVDKILDK G KGTGKWTVQ A EL V P I ++ RYLS LKEER
Sbjct: 61 LRKKDEDGKP-LVDKILDKAGQKGTGKWTVQSALELGVPVPLITEAVFARYLSSLKEERV 119
Query: 304 KAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 363
A+KVL G K DK I+DVRQALYASKI SYAQG LLR+ S E GWN
Sbjct: 120 AASKVLS--GPKAAKD----KGDKAEFIEDVRQALYASKIVSYAQGFMLLRAASKEYGWN 173
Query: 364 LNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423
LN GE+ARIW+GGCIIRA FLD+IK AY++NP+L +L++DP F +E+ + Q +WRRVV +
Sbjct: 174 LNLGEIARIWRGGCIIRAQFLDKIKDAYEKNPDLPNLLLDPYFKKEIKEYQQSWRRVVAI 233
Query: 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
A+ AGI P ++LSY+D+YR RLPANL+QAQRD FGAHTYER D+ G FHT WT
Sbjct: 234 AVEAGIPVPAFSSALSYYDSYRTERLPANLIQAQRDYFGAHTYERTDKEGFFHTNWT 290
|
This family represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. Length = 290 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 8e-76
Identities = 108/303 (35%), Positives = 168/303 (55%), Gaps = 20/303 (6%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G+ GL MG N+A + G + Y+R V+ EG TG + + V
Sbjct: 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEA----LAEEG---ATGADSLEELV 54
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
+ PR V ++V AG D TI L+ +SPGD +IDGGN +Y + RR ++KG+
Sbjct: 55 AKLPAPRVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH 114
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187
++ +G SGG G G LM GG EA + I + +A + +DG + G G+G+FV
Sbjct: 115 FVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALAPRAEDG--YLHAGPVGAGHFV 172
Query: 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGE-LESFLVEITADIFKV 246
KMVHNGIEYG MQ +E +++L+ + +LA + + W +G + S+L+++TAD
Sbjct: 173 KMVHNGIEYGMMQAYAEGFELLEASR--FDLDLAAVAEVWRRGSVIRSWLLDLTADALA- 229
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
+D +L D+I G G+WTV++A +L+V AP IAA+L R+ S ++E A
Sbjct: 230 ED----PKL-DEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRS--RQEDSFAD 282
Query: 307 KVL 309
KV+
Sbjct: 283 KVV 285
|
Length = 301 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 7e-61
Identities = 118/321 (36%), Positives = 175/321 (54%), Gaps = 26/321 (8%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
IG+ GL MG NL + + G + Y+ + V+E D EG + + V
Sbjct: 3 IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD----EGATGAA---SLDELVA 55
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
+ PR V ++V AG D I L+ +S GD +IDGGN Y ++ RR ++KG+ +
Sbjct: 56 KLSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHF 115
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK 188
L +G SGG GA G LM GG EA + I + +A +DG Y G GSG+FVK
Sbjct: 116 LDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALAPG-EDG--YLYCGPSGSGHFVK 172
Query: 189 MVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGE-LESFLVEITADIFKVK 247
MVHNGIEYG MQ I+E +++LK+ + +L + + WN G + S+L+++TA+ FK
Sbjct: 173 MVHNGIEYGMMQAIAEGFELLKN--SPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFK-- 228
Query: 248 DEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAK 307
+ +L D+I + G G+WTV++A +L V AP IA +L R+ S +++ A K
Sbjct: 229 ---KDPDL-DQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRS--RQDDTFAGK 282
Query: 308 VLKEAGLKDEVQNVGVHVDKK 328
VL A L++E G H KK
Sbjct: 283 VL--AALRNE---FGGHAVKK 298
|
Length = 300 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 2e-57
Identities = 102/303 (33%), Positives = 161/303 (53%), Gaps = 21/303 (6%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++GL GL MG N+A + E G + Y+ VD G+L +T ++ + V
Sbjct: 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVA-------GKLGITARHSLEELV 54
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
++ PR++ ++V AG + I L +SPGD ++DGGN Y + RR E +++G+
Sbjct: 55 SKLEAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH 114
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187
Y+ G SGG G R+G LM GG E Y+ + + + +A +GP + G GSG+F+
Sbjct: 115 YVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALAP---EGPGYVHAGPVGSGHFL 171
Query: 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGE-LESFLVEITADIFKV 246
KMVHNGIEYG MQ +E ++L + ++ ++ W G + S+L+++T
Sbjct: 172 KMVHNGIEYGMMQAYAEGLELLDKSD--FDFDVEDVARLWRNGSVIRSWLLDLTVKALA- 228
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
E + I G G+WTV++A EL+VAAP IAASL R+ S +E+
Sbjct: 229 -----EDPKLAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFAS--QEDDSFHM 281
Query: 307 KVL 309
KV+
Sbjct: 282 KVV 284
|
Length = 299 |
| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Score = 186 bits (476), Expect = 4e-57
Identities = 68/178 (38%), Positives = 94/178 (52%), Gaps = 19/178 (10%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
++IG GL VMG +ALN+ + G+ ++VYNRT KV+E + G +P +F
Sbjct: 1 AKIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEG-------AVGAASPAEF 53
Query: 67 VLSIQRPRSVIILVKAGSPVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ 123
V S VI +V AG+ VD I L + PGD IIDG +T RR E ++
Sbjct: 54 VASA---DVVITMVPAGAAVDAVILGEDGLLPGLKPGDIIIDGSTSDPDDTRRRAKELAE 110
Query: 124 KGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
KG+ +L VSGGEEGA G S+M GG EA+ ++ IL+ + A YIG
Sbjct: 111 KGIHFLDAPVSGGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGAC-----VTHYIGP 163
|
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 3e-49
Identities = 108/324 (33%), Positives = 162/324 (50%), Gaps = 29/324 (8%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDE-TLDRAHREGQLPLTGHYTPRDF 66
++GL GL MG N+ +A++G Y+ V DR TG R+
Sbjct: 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRT--------TGVANLREL 53
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
+ PR V ++V G VD + L+ + GD +IDGGN +Y ++ RR +KG+
Sbjct: 54 SQRLSAPRVVWVMVPHGI-VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGI 112
Query: 127 LYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 186
L G SGG G G M GG EA+ + VA + + G Y G GSG+F
Sbjct: 113 HLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVAPE-EQG--YLYCGPCGSGHF 169
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGE-LESFLVEITADIFK 245
VKMVHNGIEYG M I+E +++L++ + ++ E+ W +G + S+L+++TA F+
Sbjct: 170 VKMVHNGIEYGMMAAIAEGFEILRN--SQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFR 227
Query: 246 VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKA 305
E + + + G G+WTV A +L V AP IA SL R+ S ++ + A
Sbjct: 228 ---ESPDLAEFSGRVSDS---GEGRWTVIAAIDLGVPAPVIATSLQSRFAS--RDLDDFA 279
Query: 306 AKVLKEAGLKDEVQNVGVHVDKKR 329
KVL A L+ E G H +KK+
Sbjct: 280 NKVL--AALRKE---FGGHAEKKK 298
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+I GL +MG +A N+ + G ++VYNRT K E L T +P +
Sbjct: 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLA------AAGATVAASPAEA 54
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT-----ERRI 118
VI ++ + V + L E + PG +ID ++T R +
Sbjct: 55 A---AEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVID------MSTISPETAREL 105
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHG-PSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
+ KGL +L VSGG GA G ++M GG EA+ + +L+ + +
Sbjct: 106 AAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKN------IV 159
Query: 177 YIGEGGSGNFVKMVHNGIEYGDMQLISEAY 206
++G G+G K+ +N + G++ ++EA
Sbjct: 160 HVGPVGAGQAAKLANNILLAGNIAALAEAL 189
|
Length = 286 |
| >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 4e-11
Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 24/204 (11%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL +MG+ ++ N+ + G+ + VY+R V E + T +
Sbjct: 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-------AAGAETASTAKA-- 54
Query: 68 LSIQRPRSVIILVKAGSPVDQTIA----ALSEHMSPGDCIIDGGNEWYLNTERRIHEA-S 122
+ VII + SP + +A + E PG +ID + L R I A
Sbjct: 55 --VAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPL-ASREIAAALK 111
Query: 123 QKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181
KG+ L VSGGE A G S+M GG ++ D+++ +A V + G+
Sbjct: 112 AKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV------VHTGDI 165
Query: 182 GSGNFVKMVHNGIEYGDMQLISEA 205
G+GN K+ + I ++ +SEA
Sbjct: 166 GAGNVTKLANQVIVALNIAAMSEA 189
|
Length = 296 |
| >gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 2e-10
Identities = 53/242 (21%), Positives = 99/242 (40%), Gaps = 26/242 (10%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL +MG +++N+A+ G+ + V DE L + T R
Sbjct: 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAE-------TAR--- 50
Query: 68 LSIQRPRSVIILVKAGSPVDQTIA----ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ 123
+ VI + SP + +A + E PG ++D + + ++R +
Sbjct: 51 -QVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKE 109
Query: 124 KGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGG 182
KG+ YL VSGGE GA G S+M GG ++ ++ + + + G + +G G
Sbjct: 110 KGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEAL------GKNIVLVGGNG 163
Query: 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242
G K+ + I +++ +SEA G + + G S ++E+ +
Sbjct: 164 DGQTCKVANQIIVALNIEAVSEALVFASKAG----VDPVRVRQALRGGLAGSTVLEVKGE 219
Query: 243 IF 244
Sbjct: 220 RV 221
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291 |
| >gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 25/204 (12%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL +MG +A+N+A G + V + + D G + + T R
Sbjct: 2 KLGFIGLGIMGTPMAINLARAGHQLHV-----TTIGPVADELLSLGAVSVE---TARQVT 53
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEH-----MSPGDCIIDGGNEWYLNTERRIHEAS 122
+ + I+V V++ + E+ G I+D + + T+R + +
Sbjct: 54 ---EASDIIFIMVPDTPQVEEVL--FGENGCTKASLKGKTIVDMSSISPIETKRFARQVN 108
Query: 123 QKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181
+ G YL VSGGE GAR G S+M GG + ++ + + + G +T +G
Sbjct: 109 ELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELL------GKNITLVGGN 162
Query: 182 GSGNFVKMVHNGIEYGDMQLISEA 205
G G K+ + I +++ +SEA
Sbjct: 163 GDGQTCKVANQIIVALNIEAVSEA 186
|
Length = 292 |
| >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 8e-05
Identities = 55/222 (24%), Positives = 89/222 (40%), Gaps = 35/222 (15%)
Query: 13 GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQR 72
GL MG +A N+ + G P+ V++ V+E + +P + R
Sbjct: 3 GLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAG-------AQAAASPAEAAEGADR 55
Query: 73 PRSVIILVKAGSPVDQTIAALSEHMSPG--------DC-IIDGGNEWYLNTERRIHE-AS 122
VI ++ AG V + E + P DC ID ++ R++ E A+
Sbjct: 56 ---VITMLPAGQHVISVYSG-DEGILPKVAKGSLLIDCSTID------PDSARKLAELAA 105
Query: 123 QKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181
G +++ VSGG GAR G + M GG E + +L + + + G+
Sbjct: 106 AHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRN------IVHCGDH 159
Query: 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
G+G K+ +N + M +EA L GL L EI
Sbjct: 160 GAGQAAKICNNMLLGISMIGTAEAM-ALGEKLGLDPKVLFEI 200
|
3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 345 SYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404
+ A+G LL+ ++ + +A +W G +IR+ LD +A++++P+L +
Sbjct: 185 AIAEGFELLK----NSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQI---- 236
Query: 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSY-FDTYRRARLPANLVQAQRDLFGA 463
V R V A+ G+ P + +L F + + ++ A R+ FG
Sbjct: 237 ---SGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGG 293
Query: 464 HTYERID 470
H ++ +
Sbjct: 294 HAVKKKN 300
|
Length = 300 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 345 SYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404
+YA+G+ LL ++ + ++AR+W+ G +IR+ LD KA +P LA +
Sbjct: 185 AYAEGLELLDKSD----FDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLAGI---- 236
Query: 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPA-NLVQAQRDLFGA 463
+ V R V AI ++ P + ASL + +V A R+ FG
Sbjct: 237 ---KGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGG 293
Query: 464 HTYER 468
H +
Sbjct: 294 HAVKT 298
|
Length = 299 |
| >gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 49/215 (22%), Positives = 85/215 (39%), Gaps = 21/215 (9%)
Query: 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRD 65
++ I GL MG +A N+ ++G + V++ VD +D+ +P
Sbjct: 1 MAAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAA-------SPAQ 53
Query: 66 FVLSIQRPRSVIILVKAGSPVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS 122
+ VI ++ G V + + E +S +ID L T++ I +
Sbjct: 54 ---AAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQ 110
Query: 123 QKGLLYLGMGVSGGEEGARHGPSL-MPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181
KG + + V + A G L + GG+ E IL + ++ + G
Sbjct: 111 AKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA------GGP 164
Query: 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLS 216
G G VK+++N + L +EA VL GLS
Sbjct: 165 GMGIRVKLINNYMSIALNALSAEAA-VLCEALGLS 198
|
Length = 296 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 28/135 (20%)
Query: 345 SYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL---V 401
+YA+G LL ++L+ +A +W+ G +IR+ LD A +P L + V
Sbjct: 186 AYAEGFELLE----ASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLDEISGYV 241
Query: 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRAR-----LPAN-LVQ 455
D R V+ AI + P + A+L + R R A+ +V
Sbjct: 242 EDSGEGRWTVE----------EAIDLAVPAPVIAAAL-----FMRFRSRQEDSFADKVVA 286
Query: 456 AQRDLFGAHTYERID 470
A R+ FG H ++ +
Sbjct: 287 ALRNGFGGHAVKKKE 301
|
Length = 301 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 345 SYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404
+ A+G +LR+ ++ + E+AR+W+ G +IR+ LD A++ +P+LA
Sbjct: 184 AIAEGFEILRNSQ----FDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEF---- 235
Query: 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASL-SYFDTYRRARLPANLVQAQRDLFGA 463
V R V AI G+ P + SL S F + ++ A R FG
Sbjct: 236 ---SGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGG 292
Query: 464 HTYER 468
H ++
Sbjct: 293 HAEKK 297
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 505 | |||
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 100.0 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 100.0 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 100.0 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 100.0 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 100.0 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 100.0 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 100.0 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 100.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 100.0 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 100.0 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 100.0 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 100.0 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 100.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.97 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.96 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.92 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.92 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.91 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.91 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.89 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.89 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 99.89 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.88 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.85 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.84 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.84 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.82 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.82 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.81 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.79 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.78 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.78 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.78 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.77 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.77 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.77 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.77 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.76 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.75 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.74 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.74 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.73 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.72 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.72 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.72 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.69 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.69 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.67 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.67 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.67 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.67 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.66 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.65 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.64 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.64 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.63 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.63 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.62 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.62 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.6 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.6 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.6 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.58 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.58 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.58 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.58 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.54 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.53 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.5 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.5 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.45 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.45 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.44 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.44 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.43 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.42 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.42 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.42 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.42 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.42 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.4 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.39 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.39 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.39 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.39 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.37 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.36 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 99.33 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.33 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.33 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.32 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.3 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.29 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.28 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.27 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.26 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.26 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 99.11 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.08 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.08 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.06 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.05 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.05 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.99 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.98 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 98.96 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.95 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.94 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.93 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.92 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.92 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.86 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.85 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.77 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.76 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.75 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.74 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 98.73 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.73 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 98.71 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.69 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.68 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.64 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.64 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.63 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.63 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.62 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.61 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.58 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.58 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.55 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.55 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.53 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.45 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.45 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 98.45 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.43 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.39 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.36 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.35 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 98.33 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.32 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.29 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.25 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.24 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.18 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.17 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 98.15 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.1 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 98.06 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.04 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 98.04 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 98.01 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 98.0 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.99 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.99 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.95 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.9 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.9 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.89 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.86 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.86 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.86 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.85 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.85 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.84 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.84 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 97.83 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.82 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.81 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.8 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.8 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.79 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.79 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.77 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.76 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 97.74 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.73 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.73 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.7 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.7 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.7 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.68 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.68 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.66 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.65 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.65 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.64 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.63 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.62 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.61 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.61 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.59 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 97.58 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.56 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.55 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 97.54 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.54 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 97.52 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.52 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 97.52 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.49 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.48 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.45 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.44 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.43 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 97.43 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.43 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 97.42 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 97.42 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.37 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.36 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.36 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.34 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 97.34 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 97.33 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.31 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.31 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 97.3 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.26 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.23 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.23 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.2 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 97.18 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.16 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.14 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.13 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.12 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.11 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 97.1 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.09 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.09 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.08 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.06 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 97.05 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.04 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 97.0 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.98 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 96.95 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 96.94 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 96.91 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 96.86 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.85 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.85 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.84 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 96.82 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.8 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 96.78 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 96.75 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.73 | |
| PLN02602 | 350 | lactate dehydrogenase | 96.67 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 96.66 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.65 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.64 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 96.63 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 96.63 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.63 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.62 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.61 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.6 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.6 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.6 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.58 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.55 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.55 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 96.47 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 96.46 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 96.46 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.43 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.4 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.4 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.39 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.39 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 96.38 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.35 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 96.34 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 96.33 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 96.33 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.32 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.32 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 96.32 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 96.29 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.28 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.27 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.25 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.24 | |
| PLN00106 | 323 | malate dehydrogenase | 96.23 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.2 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 96.15 | |
| PLN02477 | 410 | glutamate dehydrogenase | 96.12 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 96.1 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 96.06 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.06 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 96.05 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.04 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.04 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.02 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.02 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 96.01 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.0 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 95.99 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 95.97 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 95.97 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.95 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.95 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 95.93 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.93 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.91 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 95.91 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.88 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.88 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.87 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.85 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 95.83 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.79 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 95.78 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.77 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.68 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 95.67 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 95.64 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 95.62 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 95.56 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 95.55 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 95.53 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 95.5 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 95.46 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.46 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 95.46 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 95.45 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.41 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.37 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.34 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 95.33 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 95.33 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.33 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.33 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.28 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 95.28 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.26 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.26 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 95.24 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.23 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.23 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 95.22 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 95.21 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 95.19 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 95.14 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 95.13 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 95.12 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 95.12 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.09 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 95.07 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.07 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.06 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 95.05 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 95.05 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 95.04 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 95.03 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 95.02 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.01 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 95.0 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 95.0 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 94.98 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 94.95 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 94.93 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 94.92 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 94.89 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.88 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.87 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 94.81 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 94.8 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 94.8 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 94.79 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 94.76 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.76 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.75 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 94.7 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 94.7 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 94.7 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.68 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 94.67 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.66 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 94.62 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.62 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.62 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.57 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 94.56 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 94.54 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 94.53 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 94.52 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 94.5 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 94.5 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 94.48 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 94.43 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 94.41 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 94.41 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.41 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.41 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 94.39 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 94.39 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.38 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 94.38 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.37 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 94.37 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 94.36 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 94.34 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.31 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 94.27 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 94.25 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 94.25 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 94.24 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 94.23 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 94.22 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 94.19 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.18 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 94.16 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 94.16 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 94.16 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 94.15 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 94.15 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 94.15 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 94.14 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 94.14 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 94.13 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 94.12 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 94.11 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 94.11 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.11 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.1 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 94.1 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.08 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 94.04 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 93.99 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 93.98 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 93.98 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 93.97 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.97 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 93.97 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 93.94 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.88 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 93.85 | |
| PF00289 | 110 | CPSase_L_chain: Carbamoyl-phosphate synthase L cha | 93.84 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 93.84 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.83 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 93.83 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 93.82 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.8 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 93.8 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 93.74 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 93.73 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 93.72 | |
| COG0074 | 293 | SucD Succinyl-CoA synthetase, alpha subunit [Energ | 93.71 | |
| PRK08643 | 256 | acetoin reductase; Validated | 93.69 | |
| PRK05868 | 372 | hypothetical protein; Validated | 93.66 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 93.64 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 93.6 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 93.58 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 93.57 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 93.57 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.55 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 93.55 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 93.52 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 93.5 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 93.5 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 93.46 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 93.43 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 93.42 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 93.41 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 93.41 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.39 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 93.38 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 93.38 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 93.35 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 93.34 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.31 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 93.3 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.28 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 93.27 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 93.25 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 93.24 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 93.24 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 93.22 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 93.21 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 93.2 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 93.2 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 93.2 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 93.19 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 93.18 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 93.14 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 93.12 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 93.12 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.08 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 93.06 |
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-139 Score=1027.25 Aligned_cols=468 Identities=58% Similarity=0.963 Sum_probs=453.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+.||+||+|+||++||+|++++||+|.+|||+++++++|.++....+ ++.++.|++|++++|++|+.|++||.++.+
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k--~i~~~~sieefV~~Le~PRkI~lMVkAG~~ 80 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGK--NIVPAYSIEEFVASLEKPRKILLMVKAGTP 80 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCC--CccccCcHHHHHHHhcCCceEEEEEecCCc
Confidence 467999999999999999999999999999999999999998765332 689999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHH
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~i 165 (505)
||.++++|+|+|.+||||||.+|+++.+|.||.+.|.++|++|++++||||+++|+.||++|+||++++|+.++|+|++|
T Consensus 81 VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~~I 160 (473)
T COG0362 81 VDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKI 160 (473)
T ss_pred HHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhcc
Q 010637 166 AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFK 245 (505)
Q Consensus 166 ga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~ 245 (505)
+||.+++|||.|+|+.|+|||||||||+|||++||+|+|+|.+++...|++.+++.++|.+||+|.++|||++|+.+||+
T Consensus 161 aAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL~ 240 (473)
T COG0362 161 AAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADILR 240 (473)
T ss_pred HhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999997779999999999999999999999999999999
Q ss_pred ccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCccccccccccc
Q 010637 246 VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHV 325 (505)
Q Consensus 246 ~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 325 (505)
.+|+.++.+++|.|+|.++|||||||+++.|+++|+|+|+|.+||++|++|+.|++|+++++.|++|.. ....
T Consensus 241 ~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~Ask~l~~~~~-------~~~~ 313 (473)
T COG0362 241 KKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASKVLAGPKL-------GEPG 313 (473)
T ss_pred hcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCC-------CCCC
Confidence 988777779999999999999999999999999999999999999999999999999999999988854 2256
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
|+..|+++|++|||+++|++|||||.+|++||++|+|+|++.+|++|||+||||||.||+.|.++|+++|++.|||++|+
T Consensus 314 dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~py 393 (473)
T COG0362 314 DKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLAPY 393 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcCHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCCccccccCCC
Q 010637 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~~~h~~w~~~ 482 (505)
|.+.+++.+++||++|..|++.|||+|++++||+|||+||++++|+|||||||||||||||||+|++|.||++|++.
T Consensus 394 F~~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~Dsyr~~~lpaNLiQAQRDyFGAHtyeR~D~~~~fHt~W~~~ 470 (473)
T COG0362 394 FKSILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWTGG 470 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhhccccHHHHHHHHHhhcccceeecCCCCccccCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999864
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-130 Score=949.27 Aligned_cols=484 Identities=61% Similarity=0.989 Sum_probs=460.4
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|+....++||+|||++||++|++|++++||.|++|||+.++++++.++.... ..+.+..|++|++..|++|++|++.|
T Consensus 1 m~q~~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~--~~i~ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 1 MSQTPKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKG--TKIIGAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred CCCccccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcC--CcccCCCCHHHHHHhcCCCcEEEEEe
Confidence 4333346899999999999999999999999999999999999998765431 36888999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHH
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRD 160 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ 160 (505)
+++.+||..+++|.|+|.+||+|||.+|+.+.+|.|+.+.+.++|+.|++++||||+++|+.||++|+||++++|..+++
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg~~~Awp~ik~ 158 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKD 158 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccc-CCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhh
Q 010637 161 ILQKVAAQV-DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239 (505)
Q Consensus 161 ll~~iga~~-~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~ 239 (505)
+|+.|++++ +++|||.|+|+.|+|||||||||+|||++||+|+|+|.++++.+|++.+++.++|.+||.+.+.|||++|
T Consensus 159 ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieI 238 (487)
T KOG2653|consen 159 IFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEI 238 (487)
T ss_pred HHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHH
Confidence 999999997 7899999999999999999999999999999999999999997779999999999999999999999999
Q ss_pred hhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCccccc
Q 010637 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQ 319 (505)
Q Consensus 240 ~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~ 319 (505)
+.+||+.+|+. +.++++.|+|.++|||||+|+++.|.++|+|+|+|.+||++||+|++|++|+.+++.|++|..+.
T Consensus 239 T~dIlk~~d~~-G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ask~L~gp~~~~--- 314 (487)
T KOG2653|consen 239 TADILKFKDED-GKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKDERVRASKVLKGPGVKR--- 314 (487)
T ss_pred hHHHhheeccC-CChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch---
Confidence 99999987654 44899999999999999999999999999999999999999999999999999999999886532
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCC
Q 010637 320 NVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLAS 399 (505)
Q Consensus 320 ~~~~~~~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ 399 (505)
....++..|++++++|+|+++|++|+|||.||++++++++|+||+.+|+++||+||||||.||+.|.++|+++|+|+|
T Consensus 315 --~~~~~k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~p~l~n 392 (487)
T KOG2653|consen 315 --DMGDDKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRNPDLAN 392 (487)
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcCccHhh
Confidence 223357889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCC-ccccc
Q 010637 400 LVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPG-SFHTE 478 (505)
Q Consensus 400 ll~~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~-~~h~~ 478 (505)
||+|+.|.+++.+.+.+||++|..|+++|||+|++|+||+|||+||++++|+||+||||||||||||++++++| .+|++
T Consensus 393 ll~d~fF~~~v~~~q~~wr~vV~~a~~~gIptP~~st~Lafydgyr~e~lpaNllQAqRDYFGAHtye~l~~~~~~~Htn 472 (487)
T KOG2653|consen 393 LLLDPFFAKAVEEAQDSWRRVVALAVEAGIPTPAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTYELLGEPGKAIHTN 472 (487)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhhhhcCcHHHHHHHHHhhccceeeecCCCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 79999
Q ss_pred cCCCCCCccchhhc
Q 010637 479 WTKLPARLVPVLMQ 492 (505)
Q Consensus 479 w~~~~~~~~~~~~~ 492 (505)
|++....++++.||
T Consensus 473 Wtg~gg~~s~~~y~ 486 (487)
T KOG2653|consen 473 WTGHGGNVSSSTYQ 486 (487)
T ss_pred ecccCCcccccccC
Confidence 99988889888887
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-118 Score=940.36 Aligned_cols=469 Identities=60% Similarity=1.017 Sum_probs=440.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|++|||||+|.||.+||++|+++||+|++|||++++++++.+.....| ..+..+.+++++++.++++|+||+|||++.+
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g-~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGN-TRVKGYHTLEELVNSLKKPRKVILLIKAGEA 79 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcC-CcceecCCHHHHHhcCCCCCEEEEEeCChHH
Confidence 358999999999999999999999999999999999999987533211 1356789999999988789999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHH
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~i 165 (505)
++++++++.+.+.+|++|||+||+.+.++.++.+.+.++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.+
T Consensus 80 v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~~i 159 (470)
T PTZ00142 80 VDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKC 159 (470)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHH-HhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhc
Q 010637 166 AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK-HVGGLSNAELAEIFDEWNKGELESFLVEITADIF 244 (505)
Q Consensus 166 ga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~-~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il 244 (505)
+++.+++||++|+|+.|+||++|||||+|+|++|++++|++.|++ +.| ++++++.++|+.|+.|.+.||+++++.+++
T Consensus 160 a~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~g-l~~~~l~~v~~~w~~g~~~S~l~ei~~~~~ 238 (470)
T PTZ00142 160 SAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILG-MSNEELSEVFNKWNEGILNSYLIEITAKIL 238 (470)
T ss_pred hhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 998778899999999999999999999999999999999999998 576 999999999999999999999999999999
Q ss_pred cccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccc
Q 010637 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVH 324 (505)
Q Consensus 245 ~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 324 (505)
.++|+.++.+.+|.|+|.++|||||+|++++|.++|||+|+|++||++|++|.+|++|..+++.|++|..... ...
T Consensus 239 ~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~~~~~~~gp~~~~~----~~~ 314 (470)
T PTZ00142 239 AKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKASSHLAGPNPANK----TET 314 (470)
T ss_pred hcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHHhccccCCCccccc----ccc
Confidence 9876533358999999999999999999999999999999999999999999999999999999987642000 112
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccH
Q 010637 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (505)
Q Consensus 325 ~~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~ 404 (505)
.+++||+||||||||||+|++|+|||+||++||++|+|++|+.+|++|||+||||||+||+.|.++|+++|++.|||+++
T Consensus 315 ~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~ 394 (470)
T PTZ00142 315 EDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDP 394 (470)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCCccccccC
Q 010637 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~~~h~~w~ 480 (505)
.|...+++..++|||+|..|++.|+|+|++++||+||++|+++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 395 ~~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~ 470 (470)
T PTZ00142 395 DFNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470 (470)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHHHhCCCCcccCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999994
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-116 Score=930.71 Aligned_cols=484 Identities=85% Similarity=1.308 Sum_probs=448.2
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|.++.+++|||||+|.||.+||+||+++||+|+||||++++++.+.+.....|...+..+.+++|+++.|++||+||+||
T Consensus 1 ~~~~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v 80 (493)
T PLN02350 1 MASAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILV 80 (493)
T ss_pred CCCCCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEEC
Confidence 66666789999999999999999999999999999999999999887421111002447889999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHH
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRD 160 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ 160 (505)
|++.++++|++++.+.+.+|++|||+||+.|.+++++.+.++++|++|+++|||||+++|+.|+++|+||+++++++++|
T Consensus 81 ~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~p 160 (493)
T PLN02350 81 KAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIED 160 (493)
T ss_pred CCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHh-CCCCHHHHHHHHHHhccCCcchhHHhh
Q 010637 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV-GGLSNAELAEIFDEWNKGELESFLVEI 239 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~-g~l~~~~i~~v~~~~~~g~~~s~l~~~ 239 (505)
+|+.++++.++++|++|+|+.|+||++||+||++++++|++++|++.++++. | ++++++.++|+.|+.|.+.||++++
T Consensus 161 vL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~G-ld~~~l~~vf~~~~~g~~~S~llei 239 (493)
T PLN02350 161 ILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGG-LSNEELAEVFAEWNKGELESFLIEI 239 (493)
T ss_pred HHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHcCCCccchHHHH
Confidence 9999998887888999999999999999999999999999999999999995 7 9999999999999999999999999
Q ss_pred hhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCccccc
Q 010637 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQ 319 (505)
Q Consensus 240 ~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~ 319 (505)
+.+++..+++|+++|.++.++||++|||||+|++++|.++|+|+|+|.++|++|+.|++|++|+.+++.|++|..+. .+
T Consensus 240 ~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~~~~~~~~~~~~-~~ 318 (493)
T PLN02350 240 TADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAAAKVFKEAGLED-IL 318 (493)
T ss_pred HHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHHHhhcCCCCccc-cc
Confidence 99998876668878999999999999999999999999999999999999999999999999999999998652110 00
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCC
Q 010637 320 NVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLAS 399 (505)
Q Consensus 320 ~~~~~~~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ 399 (505)
......++..|+++|++|+|+++|++|+|||+||+++|++|+|++|+.+|++|||+||||||+||++|.++|+++|+++|
T Consensus 319 ~~~~~~~~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~ 398 (493)
T PLN02350 319 SADSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLAS 398 (493)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhh
Confidence 00012356789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCCcccccc
Q 010637 400 LVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479 (505)
Q Consensus 400 ll~~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~~~h~~w 479 (505)
||+++.|.+.+.+..++|||+|..|++.|+|+|+|++||+||++++++++|+|+|||||||||+|||+|+|++|.||++|
T Consensus 399 l~~~~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~~~~~~nliqaqRd~FGaH~~~r~d~~g~~h~~w 478 (493)
T PLN02350 399 LLVDPEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEW 478 (493)
T ss_pred hcCCHHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCccHHHHHHHHHHhCCCceeeCCCCCCCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCc
Q 010637 480 TKLPARL 486 (505)
Q Consensus 480 ~~~~~~~ 486 (505)
++.+...
T Consensus 479 ~~~~~~~ 485 (493)
T PLN02350 479 TKLARKS 485 (493)
T ss_pred hhhcCcc
Confidence 8654433
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-116 Score=922.55 Aligned_cols=454 Identities=58% Similarity=0.970 Sum_probs=432.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh-hcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHh
Q 010637 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSE 95 (505)
Q Consensus 17 MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~ 95 (505)
||.+||+||+++||+|++|||++++++++.+. +... +++.+.|++++++++++||+||+|||++.++++|+++|++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~---g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGK---KIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCC---CeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHh
Confidence 89999999999999999999999999999874 3211 3788999999999988899999999999999999999999
Q ss_pred cCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHHhccc-CCCCc
Q 010637 96 HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPC 174 (505)
Q Consensus 96 ~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~iga~~-~~~~~ 174 (505)
.+.+|++|||+||+.|.++.++.+.++++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.+++++ ++++|
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g~~c 157 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPC 157 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 78899
Q ss_pred eEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHH-hCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCc
Q 010637 175 VTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH-VGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEG 253 (505)
Q Consensus 175 v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~-~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~ 253 (505)
+.|+|+.|+||++|||||+|+|++|++++|++.|+++ .| ++++++.++|+.||.|.+.||+++++.+++..+|..++.
T Consensus 158 ~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~G-l~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 158 VTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLG-LSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999995 67 999999999999999999999999999999875522556
Q ss_pred hhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccccchHHHH
Q 010637 254 ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDD 333 (505)
Q Consensus 254 ~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 333 (505)
++||.|+|.++|||||+|++++|.++|||+|+|.+||++|+.|..+++|..+++.|.+|.. ....+++||+||
T Consensus 237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~~~~~~~g~~~-------~~~~~~~~~i~~ 309 (459)
T PRK09287 237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPAA-------KFEGDKAEFIED 309 (459)
T ss_pred cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHHhhcccCCCCC-------cccccHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999987643 212356899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHHHHHHHHhh
Q 010637 334 VRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQR 413 (505)
Q Consensus 334 v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~~~~~~~~~ 413 (505)
||||||||+|++|+|||+||+++|++|+|++|+.+|++|||+||||||+||+.|.++|+++|+++|||+++.|...+++.
T Consensus 310 v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~ 389 (459)
T PRK09287 310 VRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEY 389 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCCccccccCC
Q 010637 414 QAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481 (505)
Q Consensus 414 ~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~~~h~~w~~ 481 (505)
.++|||+|..|++.|+|+|+|++||+||+++|++++|+|||||||||||+|||+|+|++|.||++|++
T Consensus 390 ~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~~ 457 (459)
T PRK09287 390 QDALRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEWSE 457 (459)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHhHhCCCCcccCCCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999974
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-115 Score=917.70 Aligned_cols=463 Identities=59% Similarity=0.977 Sum_probs=437.3
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHH
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~ 87 (505)
+|||||+|.||.+||++|+++||+|++|||++++++++.+.+... .++..+.+++++++.+++||+||+|||++.+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g--~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKG--KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCC--CCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 599999999999999999999999999999999999988752110 025678899999988888999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHHhc
Q 010637 88 QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAA 167 (505)
Q Consensus 88 ~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~iga 167 (505)
++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.+++
T Consensus 79 ~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia~ 158 (467)
T TIGR00873 79 AVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAA 158 (467)
T ss_pred HHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHH-HhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccc
Q 010637 168 QVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK-HVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (505)
Q Consensus 168 ~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~-~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~ 246 (505)
++++++|++|+|+.|+||++|||||+|+|++|++++|++.|++ +.| ++++++.++|+.||.+.++||+++++.+++.+
T Consensus 159 ~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g-~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~~ 237 (467)
T TIGR00873 159 KVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLG-LSNEEIAEVFTEWNNGELDSYLIEITADILKK 237 (467)
T ss_pred hcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCcccchHHHhHHHHHhc
Confidence 8877899999999999999999999999999999999999997 577 99999999999999999999999999999998
Q ss_pred cccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccc
Q 010637 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (505)
Q Consensus 247 ~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (505)
+|+ .+.+++|.|+|.++|||||+|++++|.++|||+|+|++++++|+.|..|++|..+++.|.+|... ....+
T Consensus 238 ~d~-~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~~~~~~~gp~~~------~~~~~ 310 (467)
T TIGR00873 238 KDE-DGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKVLSGPLAP------EPAVD 310 (467)
T ss_pred cCC-CCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHHhhcccCCCCcc------ccccc
Confidence 765 44589999999999999999999999999999999999999999999999999999999876421 12235
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHHH
Q 010637 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (505)
Q Consensus 327 ~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (505)
++||+||||||||||+|++|+|||+||++||++|+|++|+++|++|||+||||||+||++|.++|+++|++.|||+++.|
T Consensus 311 ~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~ 390 (467)
T TIGR00873 311 KEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYF 390 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCC--ccccccC
Q 010637 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPG--SFHTEWT 480 (505)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~--~~h~~w~ 480 (505)
...+++..++|||+|..|++.|+|+|+||+||+||++||++++|+|||||||||||+|||+|+|++| .||++|+
T Consensus 391 ~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~~~nliqaqRd~FGaH~~~r~d~~g~~~~h~~w~ 466 (467)
T TIGR00873 391 KDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWT 466 (467)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHHHhccccccccCCCCCCccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 9999996
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-89 Score=671.38 Aligned_cols=291 Identities=62% Similarity=1.029 Sum_probs=248.8
Q ss_pred hhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhh
Q 010637 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKT 263 (505)
Q Consensus 184 g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~ 263 (505)
|||||||||||||++||+++|+|.++++..|++++++.++|+.||.|.++|||++++.++++++| .++.+++|.|+|.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d-~~g~~lld~I~d~a 79 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKD-ETGGPLLDKILDKA 79 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B--TTSSBGGGGB-S--
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhcc-CccCcchhhhCCcc
Confidence 89999999999999999999999999976669999999999999999999999999999999876 56779999999999
Q ss_pred CCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccccchHHHHHHHHHHHHHH
Q 010637 264 GMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKI 343 (505)
Q Consensus 264 ~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~al~~~~~ 343 (505)
+|||||+|++++|.++|||+|+|++||++|++|+.|++|..+++.+++|.... ....+...|+++|++|+|+++|
T Consensus 80 ~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~~s~~~~~~~~~~-----~~~~~~~~~i~~l~~Aly~~~i 154 (291)
T PF00393_consen 80 GQKGTGKWTVQEALELGVPAPTIAAAVFARFLSAQKEERVAASKILPGPQKFD-----ESKEDKEEFIEDLRKALYAAKI 154 (291)
T ss_dssp --BSHHHHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHHHHHHSTT-S-ST-----TS-SSHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHHHHhhcccccccc-----cccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998864110 2345678899999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHHHHHHHHhhhhHHHHHHHH
Q 010637 344 CSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423 (505)
Q Consensus 344 ~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~r~~v~~ 423 (505)
++|+|||+||+++|++|+|++|+++|++|||+||||||.||++|.++|+++|++.|||+++.|.+.+++..++|||+|..
T Consensus 155 ~~yaQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~af~~~p~l~nLll~~~f~~~l~~~~~~lR~vV~~ 234 (291)
T PF00393_consen 155 ISYAQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAEAFKENPDLENLLLDPYFAEELKDNQPSLRRVVSL 234 (291)
T ss_dssp HHHHHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHHHHHH-TT-STGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHHHHHhCCChhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCCccccccC
Q 010637 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480 (505)
Q Consensus 424 a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~~~h~~w~ 480 (505)
|++.|+|+|++++||+||+++|++++|+|||||||||||+|||||+|++|.||++|+
T Consensus 235 ai~~gipvPalsaaL~Y~ds~~~~~lpanlIQAqRDyFGaHtyeR~D~~g~fH~~W~ 291 (291)
T PF00393_consen 235 AIEAGIPVPALSAALSYFDSYRSERLPANLIQAQRDYFGAHTYERIDKEGSFHTEWS 291 (291)
T ss_dssp HHHHT---HHHHHHHHHHHHHTTSSHTHHHHHHHHHHHH---EEBSSSSSEE---TT
T ss_pred HHHcCCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCcceeecCCCCCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999995
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=442.44 Aligned_cols=298 Identities=28% Similarity=0.507 Sum_probs=269.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+||+||||.||.+|+++|.++||+|.+||+|++.++++.+.+ ++.++|++++++.|..|++|.+|||++..+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~g-------a~~a~sl~el~~~L~~pr~vWlMvPag~it 73 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEG-------ATGAASLDELVAKLSAPRIVWLMVPAGDIT 73 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcC-------CccccCHHHHHHhcCCCcEEEEEccCCCch
Confidence 5899999999999999999999999999999999999998875 467899999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHHh
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~ig 166 (505)
++++++|.+.|++||+|||.+|+++.++.++.+.++++|+||+|++.|||..+++.|.++|+||++++++++.|+|+.++
T Consensus 74 ~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA 153 (300)
T COG1023 74 DAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALA 153 (300)
T ss_pred HHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccc
Q 010637 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (505)
Q Consensus 167 a~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~ 246 (505)
+. .
T Consensus 154 ------~g-----------------------------------------------------------------------e 156 (300)
T COG1023 154 ------PG-----------------------------------------------------------------------E 156 (300)
T ss_pred ------cC-----------------------------------------------------------------------c
Confidence 22 0
Q ss_pred cccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccc
Q 010637 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (505)
Q Consensus 247 ~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (505)
+.| .+.+|. +
T Consensus 157 -~Gy---------------------------------------------------------l~~Gp~------------G 166 (300)
T COG1023 157 -DGY---------------------------------------------------------LYCGPS------------G 166 (300)
T ss_pred -Ccc---------------------------------------------------------ccccCC------------C
Confidence 000 011332 3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHHH
Q 010637 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (505)
Q Consensus 327 ~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (505)
+|||+|||||+|||++|++|+|||+||+++ .+++|+++|+++||.|++||||||+.+.++|+++|+|+.+- ..+
T Consensus 167 sGHfvKMVHNGIEYGmM~a~aEGfelL~~s----~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~~--g~v 240 (300)
T COG1023 167 SGHFVKMVHNGIEYGMMQAIAEGFELLKNS----PFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQIS--GRV 240 (300)
T ss_pred cchhHHHHhccHHHHHHHHHHHHHHHHHhC----CCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHhc--Cee
Confidence 799999999999999999999999999964 48899999999999999999999999999999998764322 123
Q ss_pred HHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH-HHHhhccCChhhhHHHHHHhhhcCcccccc
Q 010637 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLS-YFDTYRRARLPANLVQAQRDLFGAHTYERI 469 (505)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~-y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~ 469 (505)
. .++++ ||+|++|++.|+|+|+|+.||+ .|.|.+......+++.|+|..||.|..+++
T Consensus 241 ~---dSGEG--rWTv~~aldlgvpaPVia~al~~Rf~S~~~d~f~~kvlaalR~~FGgH~vk~k 299 (300)
T COG1023 241 S---DSGEG--RWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGGHAVKKK 299 (300)
T ss_pred c---cCCCc--eeehHHHHhcCCCchHHHHHHHHHHhccchhhHHHHHHHHHHHHhCCcccccC
Confidence 3 37889 9999999999999999999999 688888888889999999999999998765
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-56 Score=447.77 Aligned_cols=295 Identities=28% Similarity=0.499 Sum_probs=257.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|||||+|.||.+||.+|+++||+|.+|||++++++.+.+.+ ...+.+++++++.+..+|+||+|||++ .+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~ 72 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR-------TTGVANLRELSQRLSAPRVVWVMVPHG-IV 72 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-------CcccCCHHHHHhhcCCCCEEEEEcCch-HH
Confidence 4899999999999999999999999999999999999988753 345678888888777799999999998 99
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHHh
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~ig 166 (505)
+++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++||+||+.+++.|+++|+||+++++++++|+|+.++
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~ 152 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVA 152 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccc
Q 010637 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (505)
Q Consensus 167 a~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~ 246 (505)
.+. +.++|+|+.|
T Consensus 153 ~~~---~~~~~~G~~G---------------------------------------------------------------- 165 (298)
T TIGR00872 153 PEE---QGYLYCGPCG---------------------------------------------------------------- 165 (298)
T ss_pred CcC---CCEEEECCcc----------------------------------------------------------------
Confidence 110 0122222222
Q ss_pred cccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccc
Q 010637 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (505)
Q Consensus 247 ~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (505)
T Consensus 166 -------------------------------------------------------------------------------- 165 (298)
T TIGR00872 166 -------------------------------------------------------------------------------- 165 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHHH
Q 010637 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (505)
Q Consensus 327 ~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (505)
.++++|++||++++++|++|+|||.|++++ +|++|+++++++|++||+|||++|+.+.++|++++.+++ |
T Consensus 166 ~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~----g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~------~ 235 (298)
T TIGR00872 166 SGHFVKMVHNGIEYGMMAAIAEGFEILRNS----QFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAE------F 235 (298)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHH------H
Confidence 234667788888888888888888888764 799999999999999999999999999999998875433 5
Q ss_pred HHHH-HhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccC-ChhhhHHHHHHhhhcCccccc
Q 010637 407 AREM-VQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRA-RLPANLVQAQRDLFGAHTYER 468 (505)
Q Consensus 407 ~~~~-~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~-~~~a~~iqaqRd~FG~H~~~r 468 (505)
...+ +++++ ||+|.+|++.|+|+|++++||.|++.+++. ++|+|+|||||||||+|+|++
T Consensus 236 ~~~~~~~~~~--r~~v~~a~~~g~p~P~~~~al~~~~~~~~~~~~~~~~~~~~r~~fg~h~~~~ 297 (298)
T TIGR00872 236 SGRVSDSGEG--RWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGGHAEKK 297 (298)
T ss_pred HHHHHhhccH--HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhCCCCcCC
Confidence 5543 45555 999999999999999999999999999988 999999999999999999987
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=388.16 Aligned_cols=299 Identities=30% Similarity=0.524 Sum_probs=254.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|||||+|.||.+||++|+++|++|.+|||++++++++.+.+ +..+.+++++++.+..+|+||+++|++..+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~ 73 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEG-------ATGADSLEELVAKLPAPRVVWLMVPAGEIT 73 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC-------CeecCCHHHHHhhcCCCCEEEEEecCCcHH
Confidence 4899999999999999999999999999999999998886643 567889999988654579999999998789
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHHh
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~ig 166 (505)
+++++++.+.+.+|++|||+||+.|..++++.+.++++|++|+|+||+||+.+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (301)
T PRK09599 74 DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALA 153 (301)
T ss_pred HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccc
Q 010637 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (505)
Q Consensus 167 a~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~ 246 (505)
.+.+ .+++|+|+.|+|+.+
T Consensus 154 ~~~~--~~~~~~G~~G~g~~~----------------------------------------------------------- 172 (301)
T PRK09599 154 PRAE--DGYLHAGPVGAGHFV----------------------------------------------------------- 172 (301)
T ss_pred cccc--CCeEeECCCcHHHHH-----------------------------------------------------------
Confidence 2100 057777665543333
Q ss_pred cccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccc
Q 010637 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (505)
Q Consensus 247 ~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (505)
T Consensus 173 -------------------------------------------------------------------------------- 172 (301)
T PRK09599 173 -------------------------------------------------------------------------------- 172 (301)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHHH
Q 010637 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (505)
Q Consensus 327 ~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (505)
|+++|+++++.|++|+|+|.|+++ ++|++|+++++++|+.||+++|++|+.+..++.++|..+ .+
T Consensus 173 -----Kl~~n~l~~~~~~~~aEa~~l~~~----~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~------~~ 237 (301)
T PRK09599 173 -----KMVHNGIEYGMMQAYAEGFELLEA----SRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLD------EI 237 (301)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHH----cCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCHH------HH
Confidence 555556666666677777777765 578899999999999999999999999999997764321 12
Q ss_pred HHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHH-HHhhccCChhhhHHHHHHhhhcCcccccc
Q 010637 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLSY-FDTYRRARLPANLVQAQRDLFGAHTYERI 469 (505)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y-~~~~~~~~~~a~~iqaqRd~FG~H~~~r~ 469 (505)
...++. ...+||++..|.+.|+|+|++++++.| |.++....+|.+++||||||||+|+|+|.
T Consensus 238 ~~~~kd-~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h~~~~~ 300 (301)
T PRK09599 238 SGYVED-SGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGHAVKKK 300 (301)
T ss_pred HHHHHh-hCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCccCC
Confidence 222323 334499999999999999999999998 99999999999999999999999999995
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=368.44 Aligned_cols=256 Identities=26% Similarity=0.412 Sum_probs=239.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+||||||+|.||.+||.||.++||+|++|||++++ .+.+.+.+ ...+.++.|++.. +|+||+|||++.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~G-------a~~a~s~~eaa~~---aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAG-------ATVAASPAEAAAE---ADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcC-------CcccCCHHHHHHh---CCEEEEecCCHHH
Confidence 48999999999999999999999999999999999 44444433 5678899999998 9999999999999
Q ss_pred HHHHH---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHH
Q 010637 86 VDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~l 161 (505)
+++|+ +++.+.+++|.++||+||+.|..++++.+.++++|++|+|+|||||+.++..|+ ++|+||+++++++++|+
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pv 150 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPV 150 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHH
Confidence 99999 578889999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhh
Q 010637 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (505)
Q Consensus 162 l~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~ 241 (505)
|+.+| ++++|+|+.|+|+.+|++||.+..+.+++++|++.++++.| +|++.+.+++ ..+..+||.++.+.
T Consensus 151 l~~~g------~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G-ld~~~~~~vi---~~~~~~s~~~e~~~ 220 (286)
T COG2084 151 LEAMG------KNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAG-LDPDVVLEVI---SGGAAGSWILENYG 220 (286)
T ss_pred HHHhc------CceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hccccCChHHHhhc
Confidence 99999 89999999999999999999999999999999999999999 9999999998 56788999999988
Q ss_pred hhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHH
Q 010637 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 242 ~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~a 289 (505)
+.+.. ++|+|+|.++.+.||++ ++.++|+++|+|+|+.+.+
T Consensus 221 ~~m~~-~~~~p~F~v~~~~KDl~------la~~~A~~~g~~lP~~~~~ 261 (286)
T COG2084 221 PRMLE-GDFSPGFAVDLMLKDLG------LALDAAKELGAPLPLTALA 261 (286)
T ss_pred chhhc-CCCCcchhHHHHHHHHH------HHHHHHHhcCCCCcHHHHH
Confidence 76665 45999999999999997 9999999999999998865
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-45 Score=367.75 Aligned_cols=207 Identities=34% Similarity=0.605 Sum_probs=184.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|||||+|.||.+||.+|+++|++|.+|||++++++.+.+.+ ...+.+++++++..+.+|+||+|+|++..+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~s~~~~~~~~~~advVi~~vp~~~~~ 73 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLG-------ITARHSLEELVSKLEAPRTIWVMVPAGEVT 73 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCC-------CeecCCHHHHHHhCCCCCEEEEEecCchHH
Confidence 4799999999999999999999999999999999988886543 567889999987644469999999998889
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHHh
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~ig 166 (505)
+++++++.+.+.+|++|||+||+.|.+++++.+.+.++|++|+++||+|++.++..|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (299)
T PRK12490 74 ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALA 153 (299)
T ss_pred HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhC-CCCHHHHHHH
Q 010637 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG-GLSNAELAEI 223 (505)
Q Consensus 167 a~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g-~l~~~~i~~v 223 (505)
.+. ++++|+|+.|+|+++|+++|.+.++.+++++|++.++++.| ++|++++.++
T Consensus 154 ~~~---~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~ 208 (299)
T PRK12490 154 PEG---PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARL 208 (299)
T ss_pred CcC---CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHH
Confidence 310 27999999999999999999999999999999988888764 3555555554
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=334.64 Aligned_cols=263 Identities=23% Similarity=0.350 Sum_probs=243.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++||+||+|.||.+|+.||.++||+|+||||+.+++++|.+.| .+++++|.|+++. +|+||.|||+..+
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~G-------a~v~~sPaeVae~---sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAG-------ARVANSPAEVAED---SDVVITMVPNPKD 104 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhc-------hhhhCCHHHHHhh---cCEEEEEcCChHh
Confidence 46899999999999999999999999999999999999999876 4678999999998 9999999999999
Q ss_pred HHHHH---HHHHhcCCCCcEE-EecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHH
Q 010637 86 VDQTI---AALSEHMSPGDCI-IDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (505)
Q Consensus 86 v~~vl---~~l~~~l~~g~iI-Id~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ 160 (505)
+++++ .+++..+++|... ||.||+.|..++++.+.+..++..|+|+|||||..+|+.|+ +||+|||++.++++.|
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~ 184 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASP 184 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHH
Confidence 99999 4566667788877 99999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhh
Q 010637 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~ 240 (505)
+|+.+| ++++|+|..|.|..+|+++|.+....|..++|++.|+.+.| +|+..+.+++ |.|...|+.+...
T Consensus 185 ~~~~mG------k~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~G-Ld~~~l~eil---n~G~~~S~~~~~~ 254 (327)
T KOG0409|consen 185 VFKLMG------KNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLG-LDAKKLLEIL---NTGRCWSSMFYNP 254 (327)
T ss_pred HHHHhc------ceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCcccHHHhCc
Confidence 999999 99999999999999999999999999999999999999999 9999999998 6688899999888
Q ss_pred hhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010637 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 241 ~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s 296 (505)
.+.+.+ ++|.|+|.++++.||++ ++..+|.+.++|+|+.+.| .+.|.+
T Consensus 255 ~p~m~k-~dy~p~f~~~~m~KDLg------la~~~a~~~~~~~P~~slA-~qly~~ 302 (327)
T KOG0409|consen 255 VPGMLK-GDYNPGFALKLMVKDLG------LALNAAESVKVPMPLGSLA-HQLYKS 302 (327)
T ss_pred Cchhhc-CCCCCcchHHHHHHHHH------HHHHhhhccCCCCchHHHH-HHHHHH
Confidence 876665 45999999999999997 9999999999999999876 344443
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=331.99 Aligned_cols=262 Identities=22% Similarity=0.329 Sum_probs=235.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|||||+|.||.+||.+|.++||+|.+|||++. .+.+.+. ++..+.++.++++. +|+||+|||++.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~-------g~~~~~s~~~~~~~---advVi~~v~~~~~v 69 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSL-------GAVSVETARQVTEA---SDIIFIMVPDTPQV 69 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHc-------CCeecCCHHHHHhc---CCEEEEeCCChHHH
Confidence 4799999999999999999999999999999975 5666543 24567899998887 99999999999889
Q ss_pred HHHHH---HHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHH
Q 010637 87 DQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 87 ~~vl~---~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll 162 (505)
++++. ++.+.+.+|++|||+||..|.+++++.+.+.++|+.|+++||+|++.+++.|+ .+|+||+++++++++|+|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l 149 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLF 149 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHH
Confidence 99883 46777889999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhh
Q 010637 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (505)
Q Consensus 163 ~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~ 242 (505)
+.++ ++++|+|+.|+|+.+|+++|.+....+++++|++.++++.| +|++++.+++ +.+.+.|++++...+
T Consensus 150 ~~~g------~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~G-ld~~~~~~~l---~~~~~~s~~~~~~~~ 219 (292)
T PRK15059 150 ELLG------KNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAG-ADPVRVRQAL---MGGFASSRILEVHGE 219 (292)
T ss_pred HHHc------CCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcCcccCHHHHhhch
Confidence 9999 78999999999999999999999999999999999999999 9999999998 567788999988877
Q ss_pred hccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 243 il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
.+.. ++|+++|.++.+.||+. ++++.|++.|+|+|+... +...|..+
T Consensus 220 ~~~~-~~~~~~f~l~~~~KDl~------l~~~~a~~~g~~~p~~~~-~~~~~~~a 266 (292)
T PRK15059 220 RMIK-RTFNPGFKIALHQKDLN------LALQSAKALALNLPNTAT-CQELFNTC 266 (292)
T ss_pred hhhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHH-HHHHHHHH
Confidence 6654 56889999999999996 999999999999998875 34555443
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=325.04 Aligned_cols=264 Identities=22% Similarity=0.275 Sum_probs=233.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||.+||.+|+++||+|.+|||++++.+++.+.+ +..+.++.++++. +|+||+|+|+...+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g-------~~~~~s~~~~~~~---aDvVi~~vp~~~~~ 71 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKG-------ATPAASPAQAAAG---AEFVITMLPNGDLV 71 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CcccCCHHHHHhc---CCEEEEecCCHHHH
Confidence 5899999999999999999999999999999999999887653 4567788888887 99999999998778
Q ss_pred HHHH---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHH
Q 010637 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 87 ~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll 162 (505)
+.++ +++.+.+++|.+|||+||..|..++++.+.+.++|+.|+++||+|++..+..|+ ++|+||+++++++++|+|
T Consensus 72 ~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l 151 (296)
T PRK15461 72 RSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPIL 151 (296)
T ss_pred HHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHH
Confidence 8887 357777889999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhh-
Q 010637 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA- 241 (505)
Q Consensus 163 ~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~- 241 (505)
+.++ +.++|+|+.|+|+.+|+++|.+....+++++|++.++++.| +|++.+.+++. .+...++.+....
T Consensus 152 ~~~g------~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-ld~~~~~~~l~---~~~~~~~~~~~~~~ 221 (296)
T PRK15461 152 MAMG------NELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALG-LSFDVALKVMS---GTAAGKGHFTTTWP 221 (296)
T ss_pred HHHc------CCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHh---cCcccChHHHcccc
Confidence 9999 78999999999999999999999999999999999999999 99999999984 4444455544443
Q ss_pred hhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcc
Q 010637 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGL 298 (505)
Q Consensus 242 ~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~ 298 (505)
+.+.. ++|+++|.++.+.||++ ++.+.|.+.|+|+|+...+ ..+|..+.
T Consensus 222 ~~~~~-~~~~~~f~~~~~~KD~~------l~~~~a~~~g~~~p~~~~~-~~~~~~a~ 270 (296)
T PRK15461 222 NKVLK-GDLSPAFMIDLAHKDLG------IALDVANQLHVPMPLGAAS-REVYSQAR 270 (296)
T ss_pred chhcc-CCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHHHH
Confidence 24433 56899999999999996 9999999999999988754 56665543
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=315.90 Aligned_cols=260 Identities=22% Similarity=0.288 Sum_probs=232.7
Q ss_pred EEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHHHH
Q 010637 11 LAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTI 90 (505)
Q Consensus 11 IIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl 90 (505)
|||+|.||.+||.+|+++||+|.+|||++++++.+.+.+ +..+.++.++++. +|+||+|||++.+++.++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~---advVil~vp~~~~~~~v~ 70 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAG-------AQAAASPAEAAEG---ADRVITMLPAGQHVISVY 70 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHHHHHH
Confidence 689999999999999999999999999999998887653 4567899998887 999999999987889998
Q ss_pred ---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHHHHHh
Q 010637 91 ---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 91 ---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll~~ig 166 (505)
+++.+.+.+|++|||+||..|..++++.+.+.++|++|+++||+||+.++..|+ .+|+||+++.+++++|+|+.++
T Consensus 71 ~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g 150 (288)
T TIGR01692 71 SGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMG 150 (288)
T ss_pred cCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhc
Confidence 788888999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhh---
Q 010637 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI--- 243 (505)
Q Consensus 167 a~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~i--- 243 (505)
++++|+|+.|+|+.+|+++|.+.++.+++++|++.++++.| +|++++.+++ +.+.+.|+..+...+.
T Consensus 151 ------~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~~---~~~~~~s~~~~~~~~~~~~ 220 (288)
T TIGR01692 151 ------RNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLG-LDPKVLFEIA---NTSSGRCWSSDTYNPVPGV 220 (288)
T ss_pred ------CCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCcHHHHhCCCccc
Confidence 78999999999999999999999999999999999999999 9999999998 5667778777655431
Q ss_pred ---ccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 244 ---FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 244 ---l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
....++|+++|.++.+.||++ ++.+.|.+.|+|+|+...+ ...|..+
T Consensus 221 ~~~~~~~~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~a 270 (288)
T TIGR01692 221 MPQAPASNGYQGGFGTALMLKDLG------LAQDAAKSAGAPTPLGALA-RQLYSLF 270 (288)
T ss_pred cccccccCCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 112256889999999999996 9999999999999988754 5555544
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=359.28 Aligned_cols=262 Identities=17% Similarity=0.282 Sum_probs=241.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|||||+|.||.+||.||+++||+|.+|||++++++.+.+.+ ...++|+.|+++. +|+||+|||++.++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~G-------a~~~~s~~e~a~~---advVi~~l~~~~~v 74 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELG-------GHRCDSPAEAAKD---AAALVVVLSHPDQV 74 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEEcCChHHH
Confidence 5799999999999999999999999999999999999998764 4678999999988 99999999999999
Q ss_pred HHHH---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCC--CeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHH
Q 010637 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG--LLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (505)
Q Consensus 87 ~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~g--i~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ 160 (505)
++|+ +++.+.+.+|++|||+||..|..++++.+.+.++| +.|+++||+||+.+|..|. ++|+||+++++++++|
T Consensus 75 ~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p 154 (1378)
T PLN02858 75 DDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQP 154 (1378)
T ss_pred HHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHH
Confidence 9998 57888889999999999999999999999999999 9999999999999999999 9999999999999999
Q ss_pred HHHHHhcccCCCCceEEe-CCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhh
Q 010637 161 ILQKVAAQVDDGPCVTYI-GEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~v-G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~ 239 (505)
+|+.+| +.++++ |+.|+|+.+|+++|.+.++.+++++|++.++++.| ++++.+.+++ +.+.+.|+.++.
T Consensus 155 ~l~~~g------~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~G-ld~~~l~~vl---~~s~g~s~~~~~ 224 (1378)
T PLN02858 155 FLSAMC------QKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAG-IHPWIIYDII---SNAAGSSWIFKN 224 (1378)
T ss_pred HHHHhc------CceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCHHHHh
Confidence 999999 778764 99999999999999999999999999999999999 9999999998 567888999888
Q ss_pred hhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010637 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 240 ~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s 296 (505)
..+.+.. ++|.++|.++.+.||++ ++++.|.++|+|+|+...+ ..+|..
T Consensus 225 ~~~~~~~-~d~~~~F~l~l~~KDl~------la~~~A~~~g~~lpl~~~a-~~~~~~ 273 (1378)
T PLN02858 225 HVPLLLK-DDYIEGRFLNVLVQNLG------IVLDMAKSLPFPLPLLAVA-HQQLIS 273 (1378)
T ss_pred hhhHhhc-CCCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 8776654 56899999999999997 9999999999999988764 555544
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=305.84 Aligned_cols=264 Identities=21% Similarity=0.310 Sum_probs=236.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|+|||||+|.||..+|.+|+++|++|.+|||++++.+.+.+.+ +..+++++++++. +|+||+|+|+...
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~~~~e~~~~---~d~vi~~vp~~~~ 71 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAG-------AETASTAKAVAEQ---CDVIITMLPNSPH 71 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEeCCCHHH
Confidence 56899999999999999999999999999999999988876543 4567889998877 9999999999888
Q ss_pred HHHHH---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHH
Q 010637 86 VDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~l 161 (505)
++.++ +++.+.+.+|++|||+||..|..++++.+.+.++|++|+++||+|++..+..|. .+|+||+++++++++++
T Consensus 72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~ 151 (296)
T PRK11559 72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDL 151 (296)
T ss_pred HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHH
Confidence 88887 567888899999999999999999999999999999999999999999999998 89999999999999999
Q ss_pred HHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhh
Q 010637 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (505)
Q Consensus 162 l~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~ 241 (505)
|+.++ .+++++|+.|+|+.+|+++|.+.++.+++++|++.++++.| ++++++.+++ ..+.+.|++++...
T Consensus 152 l~~~~------~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-i~~~~~~~~l---~~~~~~s~~~~~~~ 221 (296)
T PRK11559 152 MKAMA------GSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAG-VNPDLVYQAI---RGGLAGSTVLDAKA 221 (296)
T ss_pred HHHhc------CCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhhc
Confidence 99999 78999999999999999999999999999999999999998 9999999887 56777888888776
Q ss_pred hhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 242 ~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
+.+.. ++|.++|.++...||++ .+++.|++.|+|+|+...+ ..+|..+
T Consensus 222 ~~~~~-~d~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~~ 269 (296)
T PRK11559 222 PMVMD-RNFKPGFRIDLHIKDLA------NALDTSHGVGAPLPLTAAV-MEMMQAL 269 (296)
T ss_pred hHhhc-CCCCCCcchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 65544 46888999999999986 8999999999999998864 5665544
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=302.74 Aligned_cols=262 Identities=21% Similarity=0.354 Sum_probs=235.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHH
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~ 87 (505)
+|||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ ...+.++.+++++ +|+||+|+|+...++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---aDivi~~vp~~~~~~ 70 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAG-------AVTAETARQVTEQ---ADVIFTMVPDSPQVE 70 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CcccCCHHHHHhc---CCEEEEecCCHHHHH
Confidence 599999999999999999999999999999999998887653 3456788888887 999999999987888
Q ss_pred HHH---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHHH
Q 010637 88 QTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQ 163 (505)
Q Consensus 88 ~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll~ 163 (505)
.++ +++.+.+.+|.+|||+||..|.+++++.+.++++|++|+++|++|++..+..|. .+|+||+++++++++++|+
T Consensus 71 ~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~ 150 (291)
T TIGR01505 71 EVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFE 150 (291)
T ss_pred HHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHH
Confidence 887 457777889999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred HHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhh
Q 010637 164 KVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243 (505)
Q Consensus 164 ~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~i 243 (505)
.++ ++++++|+.|.|+.+|+++|.+.+..+.+++|++.++++.| ++++++.+++ ..+.+.|++++.+.+.
T Consensus 151 ~lg------~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-id~~~~~~~l---~~~~~~s~~~~~~~~~ 220 (291)
T TIGR01505 151 ALG------KNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-VDPVRVRQAL---RGGLAGSTVLEVKGER 220 (291)
T ss_pred Hhc------CCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhhChh
Confidence 999 78999999999999999999999999999999999999998 9999999998 4566788988887766
Q ss_pred ccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 244 l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
+.. ++|.++|.++.+.||+. ++...|.+.|+|+|+..++ ..+|..+
T Consensus 221 ~~~-~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~~~~~~~-~~~~~~a 266 (291)
T TIGR01505 221 VID-RTFKPGFRIDLHQKDLN------LALDSAKAVGANLPNTATV-QELFNTL 266 (291)
T ss_pred hhc-CCCCCCcchHHHHHHHH------HHHHHHHHcCCCChhHHHH-HHHHHHH
Confidence 554 56889999999999996 8999999999999988865 5555554
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=343.63 Aligned_cols=266 Identities=18% Similarity=0.247 Sum_probs=239.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++++|||||+|.||.+||.+|+++||+|.+|||++++++.+.+.+ ...+.++.++++. +|+||+|||++.
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------a~~~~s~~e~~~~---aDvVi~~V~~~~ 392 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAG-------GLAGNSPAEVAKD---VDVLVIMVANEV 392 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEecCChH
Confidence 457899999999999999999999999999999999999887754 3457899999987 999999999988
Q ss_pred hHHHHH---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH--CCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHH
Q 010637 85 PVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNI 158 (505)
Q Consensus 85 ~v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v 158 (505)
++++|+ .++.+.+.+|++|||+||+.|..++++.+.+++ +|++|+++||+||+.++..|+ ++|+||++++++++
T Consensus 393 ~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~ 472 (1378)
T PLN02858 393 QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSA 472 (1378)
T ss_pred HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHH
Confidence 999998 457788889999999999999999999999998 999999999999999999999 99999999999999
Q ss_pred HHHHHHHhcccCCCCceEEe-CCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHH
Q 010637 159 RDILQKVAAQVDDGPCVTYI-GEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLV 237 (505)
Q Consensus 159 ~~ll~~iga~~~~~~~v~~v-G~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~ 237 (505)
+|+|+.++ +.++++ |+.|+|+.+|+++|.+.+..+++++|++.++++.| +|++.+.+++ +.+.+.||.+
T Consensus 473 ~plL~~lg------~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~G-ld~~~l~evl---~~s~g~s~~~ 542 (1378)
T PLN02858 473 GSVLSALS------EKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLG-LNTRKLFDII---SNAGGTSWMF 542 (1378)
T ss_pred HHHHHHHh------CcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhcccChhh
Confidence 99999999 678874 67999999999999999999999999999999999 9999999998 4567788888
Q ss_pred hhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcc
Q 010637 238 EITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGL 298 (505)
Q Consensus 238 ~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~ 298 (505)
+...+.+.. ++|+++|.++.+.||++ ++.+.|.++|+|+|+...+ ..+|..+.
T Consensus 543 ~~~~~~~l~-~d~~~~f~l~l~~KDl~------l~~~~a~~~g~~~pl~~~~-~~~~~~a~ 595 (1378)
T PLN02858 543 ENRVPHMLD-NDYTPYSALDIFVKDLG------IVSREGSSRKIPLHLSTVA-HQLFLAGS 595 (1378)
T ss_pred hhccchhhc-CCCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHHH
Confidence 877665554 56889999999999997 9999999999999988754 56665554
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=246.55 Aligned_cols=159 Identities=28% Similarity=0.489 Sum_probs=142.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|++|||||+|.||.+||++|+++||+|++|||++++.+++.+.+ ++.++|++|+++. +|+||+|||++.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~s~~e~~~~---~dvvi~~v~~~~~ 70 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG-------AEVADSPAEAAEQ---ADVVILCVPDDDA 70 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT-------EEEESSHHHHHHH---BSEEEE-SSSHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh-------hhhhhhhhhHhhc---ccceEeecccchh
Confidence 47999999999999999999999999999999999999998864 6789999999998 9999999999999
Q ss_pred HHHHHHH--HHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHH
Q 010637 86 VDQTIAA--LSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 86 v~~vl~~--l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll 162 (505)
+++++.+ +.+.+.+|++|||+||..|..++++.+.+.++|++|+++||+||+.++..|+ ++|+||+++++++++|+|
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l 150 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLL 150 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHH
Confidence 9999988 9999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhcccCCCCceE-EeCC
Q 010637 163 QKVAAQVDDGPCVT-YIGE 180 (505)
Q Consensus 163 ~~iga~~~~~~~v~-~vG~ 180 (505)
+.++ .+++ ++||
T Consensus 151 ~~~~------~~v~~~~G~ 163 (163)
T PF03446_consen 151 EAMG------KNVYHYVGP 163 (163)
T ss_dssp HHHE------EEEEEE-ES
T ss_pred HHHh------CCceeeeCc
Confidence 9999 6788 4575
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=251.10 Aligned_cols=251 Identities=18% Similarity=0.170 Sum_probs=205.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhhcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
|+|||||+|.||.++|.+|+++||+|++||+++++++.+.+.. ...| +++.++++.++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g--~l~~~~~~~~~~~~-- 76 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAG--RLRATTDYEDAIRD-- 76 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcC--CeEEECCHHHHHhh--
Confidence 4899999999999999999999999999999999998876421 0011 36777888887776
Q ss_pred CCcEEEEEcCCCc---------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC--CCe-EEeCCCCCCHHH
Q 010637 72 RPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLL-YLGMGVSGGEEG 139 (505)
Q Consensus 72 ~advIil~vp~~~---------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~-~i~~pvsGg~~~ 139 (505)
+|+||+|||++. .+..+++++.+.+.+|++||++||..|.+++++...+.++ |.. +.+.|++++|+.
T Consensus 77 -advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~ 155 (411)
T TIGR03026 77 -ADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEF 155 (411)
T ss_pred -CCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCc
Confidence 999999999874 3778888899999999999999999999999987655444 443 566788888877
Q ss_pred hhcCC---------ccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHH
Q 010637 140 ARHGP---------SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (505)
Q Consensus 140 a~~G~---------~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~ 210 (505)
+..|. .++.|+++++.++++++|+.++. ..++++++.++|+.+|+++|.+.+..+++++|+..+++
T Consensus 156 ~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~ 230 (411)
T TIGR03026 156 LREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIE-----DGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICE 230 (411)
T ss_pred CCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcc-----CCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77775 57899999999999999999971 25888999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCch--hHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHH
Q 010637 211 HVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGE--LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 211 ~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~--~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
+.| +|++++.+++. .+. .+.. ..|.|+| -...+.||+. +....|.++|+++|++.+
T Consensus 231 ~~G-iD~~~v~~~~~---~~~----------~i~~--~~~~pg~g~gg~c~~KD~~------~l~~~a~~~g~~~~l~~~ 288 (411)
T TIGR03026 231 ALG-IDVYEVIEAAG---TDP----------RIGF--NFLNPGPGVGGHCIPKDPL------ALIYKAKELGYNPELIEA 288 (411)
T ss_pred HhC-CCHHHHHHHhC---CCC----------CCCC--CcCCCCCCCCCCchhhhHH------HHHHHHHhcCCCcHHHHH
Confidence 999 99999999872 221 1111 2345544 4556888885 788999999999999886
Q ss_pred H
Q 010637 289 S 289 (505)
Q Consensus 289 a 289 (505)
+
T Consensus 289 ~ 289 (411)
T TIGR03026 289 A 289 (411)
T ss_pred H
Confidence 5
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=221.08 Aligned_cols=206 Identities=13% Similarity=0.077 Sum_probs=169.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh------------hcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL------------SIQRP 73 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~------------~l~~a 73 (505)
+++|+|||+|.||.+||.+|+++||+|++||+++++++.+..... .+ ....+++++. .++.+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~-----~~-~e~~l~~~l~~~~~~g~l~~~~~~~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEI-----HI-VEPDLDMVVKTAVEGGYLRATTTPEPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCC-----Cc-CCCCHHHHHHHHhhcCceeeecccccC
Confidence 368999999999999999999999999999999999987543210 00 0112222211 01249
Q ss_pred cEEEEEcCCC---------chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCC--------------eEEe
Q 010637 74 RSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL--------------LYLG 130 (505)
Q Consensus 74 dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi--------------~~i~ 130 (505)
|+||+|||++ ..+..+++++.+++++|++||+.||..|.+++++...+.+++. +++.
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~ 156 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAY 156 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEE
Confidence 9999999986 5788888999999999999999999999999999887776533 3456
Q ss_pred CC--CCCCHHHhhcCC-ccccCC-CHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHH
Q 010637 131 MG--VSGGEEGARHGP-SLMPGG-SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAY 206 (505)
Q Consensus 131 ~p--vsGg~~~a~~G~-~im~gg-~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~ 206 (505)
+| +.+|...+..+. ..++|| +++++++++++|+.++ +.++++++.++|+.+|+++|.+.+..+++++|+.
T Consensus 157 ~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~------~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~ 230 (415)
T PRK11064 157 CPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFL------EGECVVTNSRTAEMCKLTENSFRDVNIAFANELS 230 (415)
T ss_pred CCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhc------CCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 666666555555 567788 9999999999999999 6778999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH
Q 010637 207 DVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 207 ~l~~~~g~l~~~~i~~v~ 224 (505)
.++++.| +|.+++.+.+
T Consensus 231 ~lae~~G-iD~~~v~~~~ 247 (415)
T PRK11064 231 LICADQG-INVWELIRLA 247 (415)
T ss_pred HHHHHhC-CCHHHHHHHh
Confidence 9999999 9999999887
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-24 Score=220.86 Aligned_cols=285 Identities=13% Similarity=0.048 Sum_probs=206.4
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhccc----C-CC--CeeeeCCHHHHHhhcCCC
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----G-QL--PLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~----g-~~--~i~~~~s~~e~v~~l~~a 73 (505)
|++ +|+|+|||+|.||..||.+|+++||+|++|+|++++.+.+...+.+. | .+ ++..+++++++++. +
T Consensus 1 ~~~--~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~---a 75 (328)
T PRK14618 1 MHH--GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG---A 75 (328)
T ss_pred CCC--CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC---C
Confidence 444 46899999999999999999999999999999999888877542110 0 00 25567788887766 9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCC-Cchh--HHHHHHHHHH---CCCeEEeCCCCCCHHHhhcCC-cc
Q 010637 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLN--TERRIHEASQ---KGLLYLGMGVSGGEEGARHGP-SL 146 (505)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~-~~~~--t~~~~~~l~~---~gi~~i~~pvsGg~~~a~~G~-~i 146 (505)
|+||+++|+. .+++++ +.+.++.++|+++|+ .+.+ .+.+.+.+.+ +++.+++.|....+.+...+. .+
T Consensus 76 D~Vi~~v~~~-~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~ 150 (328)
T PRK14618 76 DFAVVAVPSK-ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATV 150 (328)
T ss_pred CEEEEECchH-HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEE
Confidence 9999999996 566665 445678899999995 4443 5566666665 677777777554444433455 77
Q ss_pred ccCCCHHHHHHHHHHHHHHhcccCCCCceE--------EeCC---------CcchhhhhhHhhhHHHhHhhHHHHHHHHH
Q 010637 147 MPGGSFEAYNNIRDILQKVAAQVDDGPCVT--------YIGE---------GGSGNFVKMVHNGIEYGDMQLISEAYDVL 209 (505)
Q Consensus 147 m~gg~~ea~~~v~~ll~~iga~~~~~~~v~--------~vG~---------~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~ 209 (505)
+.|++++.+++++++|+..+. .++ +++. .|.+..+|+.+|......++.++|++.++
T Consensus 151 ~~~~~~~~~~~v~~ll~~~~~------~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la 224 (328)
T PRK14618 151 VASPEPGLARRVQAAFSGPSF------RVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFG 224 (328)
T ss_pred EEeCCHHHHHHHHHHhCCCcE------EEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 899999999999999998883 343 3443 58999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHhcc-CCcchhHHhhhhh--hcccc---ccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCc
Q 010637 210 KHVGGLSNAELAEIFDEWNK-GELESFLVEITAD--IFKVK---DEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAA 283 (505)
Q Consensus 210 ~~~g~l~~~~i~~v~~~~~~-g~~~s~l~~~~~~--il~~~---~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~ 283 (505)
++.| ++++.+.++....+- ++..|+..+.+.. .+.+. +++.+.|.+....+|+. .+.+.+.++|+++
T Consensus 225 ~~~G-~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~------~~~~la~~~~~~~ 297 (328)
T PRK14618 225 VALG-AEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVK------ALDAWAKAHGHDL 297 (328)
T ss_pred HHhC-CCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHH------HHHHHHHHhCCCC
Confidence 9999 999999888521000 2334555555421 22221 12344566666777775 8899999999999
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHhc
Q 010637 284 PTIAASLDCRYLSGLKEEREKAAKVLK 310 (505)
Q Consensus 284 p~i~~av~~r~~s~~~~~r~~~~~~~~ 310 (505)
|++..+ .+++...++.......++.
T Consensus 298 Pl~~~~--~~~~~~~~~~~~~~~~~~~ 322 (328)
T PRK14618 298 PIVEAV--ARVARGGWDPLAGLRSLMG 322 (328)
T ss_pred CHHHHH--HHHHhCCCCHHHHHHHHhc
Confidence 998753 4555555566666666653
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=214.79 Aligned_cols=281 Identities=13% Similarity=0.100 Sum_probs=193.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccC---C----CCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG---Q----LPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g---~----~~i~~~~s~~e~v~~l~~advIil 78 (505)
||+|+|||+|.||..+|.+|+++||+|.+|+|++++++.+.+.+.... . .++..+.+++++++. +|+||+
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi~ 77 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD---ADLILV 77 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC---CCEEEE
Confidence 368999999999999999999999999999999999888876531100 0 025567788877766 999999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCCc-hhHHHHHHHHHHC-----CCeEEeCCCCCCHHHhhcCC-ccccCCC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY-LNTERRIHEASQK-----GLLYLGMGVSGGEEGARHGP-SLMPGGS 151 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~-~~t~~~~~~l~~~-----gi~~i~~pvsGg~~~a~~G~-~im~gg~ 151 (505)
|||+ ..++++++++.+.+.++++||+++|+.. ...++..+.+.+. ...++..|..+.+..+..+. .++.|++
T Consensus 78 ~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~ 156 (325)
T PRK00094 78 AVPS-QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTD 156 (325)
T ss_pred eCCH-HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCC
Confidence 9999 4899999999998889999999985443 3344444444443 34456666655444443334 5667789
Q ss_pred HHHHHHHHHHHHHHhcccCCCCceEEeCC-----------------CcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCC
Q 010637 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGE-----------------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (505)
Q Consensus 152 ~ea~~~v~~ll~~iga~~~~~~~v~~vG~-----------------~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~ 214 (505)
.+.+++++++|+..+ ..+.+..+ .|.+..+|+.+|.+....++.++|++.++++.|
T Consensus 157 ~~~~~~~~~~l~~~~------~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G- 229 (325)
T PRK00094 157 EELAERVQELFHSPY------FRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALG- 229 (325)
T ss_pred HHHHHHHHHHhCCCC------EEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-
Confidence 999999999999887 33333222 378888999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhccCC----cchhHHhhhh--hhccccccC-----CCchhHHHHHhhhCCCchHHHHHHHHHHcCCCc
Q 010637 215 LSNAELAEIFDEWNKGE----LESFLVEITA--DIFKVKDEY-----GEGELVDKILDKTGMKGTGKWTVQQAAELSVAA 283 (505)
Q Consensus 215 l~~~~i~~v~~~~~~g~----~~s~l~~~~~--~il~~~~~~-----~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~ 283 (505)
++++.+.++.. .+. ..|+..+... ..+.....+ ..+ .+....+|++ .+++.|.++|+|+
T Consensus 230 ~d~~~~~~~~~---~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~------~~~~~a~~~~~~~ 299 (325)
T PRK00094 230 ANPETFLGLAG---LGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAK------AVYELAKKLGVEM 299 (325)
T ss_pred CChhhhhcccH---hhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHH------HHHHHHHHhCCCC
Confidence 99999977642 111 1111111111 111110000 000 1223345553 7889999999999
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHh
Q 010637 284 PTIAASLDCRYLSGLKEEREKAAKVL 309 (505)
Q Consensus 284 p~i~~av~~r~~s~~~~~r~~~~~~~ 309 (505)
|+..++ ...+...++.+..+..++
T Consensus 300 P~~~~~--~~~~~~~~~~~~~~~~~~ 323 (325)
T PRK00094 300 PITEAV--YAVLYEGKDPREAVEDLM 323 (325)
T ss_pred CHHHHH--HHHHcCCCCHHHHHHHHh
Confidence 998754 344555565666555443
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=217.39 Aligned_cols=249 Identities=12% Similarity=0.132 Sum_probs=184.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc------------cCCCCeeeeCCHHHHHhhcCC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR------------EGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~------------~g~~~i~~~~s~~e~v~~l~~ 72 (505)
..|+|||||+|.||.+||.+|++ ||+|++||+++++++.+. .+.. .| ++...++. +.++.
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g--~l~~t~~~-~~~~~--- 76 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREAR--YLKFTSEI-EKIKE--- 76 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhC--CeeEEeCH-HHHcC---
Confidence 45799999999999999999987 699999999999999988 3321 01 23344444 44555
Q ss_pred CcEEEEEcCCC---------chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH--CCCeEEe--------CCC
Q 010637 73 PRSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLG--------MGV 133 (505)
Q Consensus 73 advIil~vp~~---------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~gi~~i~--------~pv 133 (505)
+|++|+|||++ ..+....+++.+.+++|++||+.||..|.+++++.+...+ .|..+.+ .++
T Consensus 77 advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v 156 (425)
T PRK15182 77 CNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERI 156 (425)
T ss_pred CCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcC
Confidence 99999999987 3444555788899999999999999999999986554433 3555443 356
Q ss_pred CCCHHHhhcCC--ccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHH
Q 010637 134 SGGEEGARHGP--SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH 211 (505)
Q Consensus 134 sGg~~~a~~G~--~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~ 211 (505)
.+|......+. .++.|++++..+.++++++.+.. ..++++++.++|+.+|+++|.+.+..+++++|+..++++
T Consensus 157 ~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~-----~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~ 231 (425)
T PRK15182 157 NPGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIIS-----AGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNR 231 (425)
T ss_pred CCCcccccccCCCeEEECCCHHHHHHHHHHHHHHhh-----cCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76765554443 57778888888999999999872 236788999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHH
Q 010637 212 VGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 212 ~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~a 289 (505)
.| +|.+++.+++ +.. +.+.. .. .+.++++ -+-+|.. ..+..|.++|++++++.+|
T Consensus 232 ~G-iD~~~v~~a~---~~~----~~~~~----~~-pG~vGG~----ClpkD~~------~L~~~a~~~g~~~~l~~~a 286 (425)
T PRK15182 232 LN-IDTEAVLRAA---GSK----WNFLP----FR-PGLVGGH----CIGVDPY------YLTHKSQGIGYYPEIILAG 286 (425)
T ss_pred hC-cCHHHHHHHh---cCC----CCccc----CC-CCccccc----cccccHH------HHHHHHHhcCCCcHHHHHH
Confidence 99 9999999885 221 11110 00 0112222 3344442 4556788999998888765
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-22 Score=201.47 Aligned_cols=250 Identities=12% Similarity=0.088 Sum_probs=184.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH-----------hhcccCC------CCeeeeCCHHHHHhh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-----------RAHREGQ------LPLTGHYTPRDFVLS 69 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~-----------~~~~~g~------~~i~~~~s~~e~v~~ 69 (505)
++|+|||+|.||.+||.+|+++||+|++||++++..+...+ .+...+. -++..+.+++++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 58999999999999999999999999999999987765432 1110000 024677888887776
Q ss_pred cCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCcccc
Q 010637 70 IQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMP 148 (505)
Q Consensus 70 l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~ 148 (505)
+|+|++++|+..+++..+ ..+.+.. ++++++.+||+ .....++.+.+...+..+.+.|+++.... ....|+
T Consensus 83 ---ad~Vi~avpe~~~~k~~~~~~l~~~~-~~~~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~~---~lveiv 154 (308)
T PRK06129 83 ---ADYVQESAPENLELKRALFAELDALA-PPHAILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYLI---PVVEVV 154 (308)
T ss_pred ---CCEEEECCcCCHHHHHHHHHHHHHhC-CCcceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCcccC---ceEEEe
Confidence 999999999976665554 5555554 45566665554 44566777777766778888898763211 123455
Q ss_pred C---CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010637 149 G---GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 149 g---g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~ 225 (505)
+ ++++++++++++++.+| +.++++++.+.|+ +.|.+ .+++++|++.+++++| +|++++++++.
T Consensus 155 ~~~~t~~~~~~~~~~~~~~lG------~~~v~v~~~~~G~----i~nrl---~~a~~~EA~~l~~~g~-~~~~~id~~~~ 220 (308)
T PRK06129 155 PAPWTAPATLARAEALYRAAG------QSPVRLRREIDGF----VLNRL---QGALLREAFRLVADGV-ASVDDIDAVIR 220 (308)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEEEEecCCCccH----HHHHH---HHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 4 89999999999999999 8899999888887 33444 4478899999999998 99999999984
Q ss_pred HhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHH
Q 010637 226 EWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASL 290 (505)
Q Consensus 226 ~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av 290 (505)
.+.+.+|.+ ..+.... |.+++++....+.++.. .....+.+.+.|.|++..-+
T Consensus 221 ---~~~g~~~~~--~gp~~~~-d~~~~~g~~~~~~k~~~------l~~~~~~~~~~~~~~~~~~~ 273 (308)
T PRK06129 221 ---DGLGLRWSF--MGPFETI-DLNAPGGVADYAQRYGP------MYRRMAAERGQPVPWDGELV 273 (308)
T ss_pred ---hccCCCccC--cCHHHHH-hccccccHHHHHHHHHH------HHHhhccccCCCchhhHHHH
Confidence 455555554 3343332 45667788888888864 77788888999999887544
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-22 Score=208.21 Aligned_cols=200 Identities=16% Similarity=0.193 Sum_probs=162.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc-----------cCCCCeeeeCCHHHHHhhcCCCcE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR-----------EGQLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~-----------~g~~~i~~~~s~~e~v~~l~~adv 75 (505)
|||+|||+|.||.++|..|+. ||+|++||+++++++.+.+.... ....++....++.+++.. +|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~---ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD---ADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC---CCE
Confidence 489999999999999988775 99999999999999888752100 000135555567777766 999
Q ss_pred EEEEcCCC----------chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-
Q 010637 76 VIILVKAG----------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP- 144 (505)
Q Consensus 76 Iil~vp~~----------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~- 144 (505)
||+|||++ ..++++++++.+ +++|++||+.||..|.+++++.+.+.+.++.| +|+.++.|.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~-------~PE~l~~G~a 148 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF-------SPEFLREGKA 148 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE-------CcccccCCcc
Confidence 99999987 577888888887 68999999999999999999998887766555 344455553
Q ss_pred --------ccccCCCHHHHHHHHHHHHH--HhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCC
Q 010637 145 --------SLMPGGSFEAYNNIRDILQK--VAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (505)
Q Consensus 145 --------~im~gg~~ea~~~v~~ll~~--iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~ 214 (505)
.++.|++++..+++.++|.. ++. ...+++++.++|.++|++.|.+.+..+++++|+..++++.|
T Consensus 149 ~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~G- 222 (388)
T PRK15057 149 LYDNLHPSRIVIGERSERAERFAALLQEGAIKQ-----NIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLG- 222 (388)
T ss_pred cccccCCCEEEEEcCcHHHHHHHHHHHhhhhcC-----CCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 57889988888999998854 441 23347899999999999999999999999999999999999
Q ss_pred CCHHHHHHHH
Q 010637 215 LSNAELAEIF 224 (505)
Q Consensus 215 l~~~~i~~v~ 224 (505)
+|.+++.+++
T Consensus 223 iD~~eV~~a~ 232 (388)
T PRK15057 223 LNTRQIIEGV 232 (388)
T ss_pred cCHHHHHHHh
Confidence 9999999987
|
|
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-23 Score=206.60 Aligned_cols=118 Identities=14% Similarity=0.290 Sum_probs=92.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHHHH
Q 010637 328 KRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFA 407 (505)
Q Consensus 328 ~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~~~ 407 (505)
||||||||||||||+||+++|+|++|+...+..+ .++.+|++.||.| .|+|+||+++.++|++++..+..|+|.+.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~--~ei~~vf~~Wn~g-~l~S~Lieit~~il~~~d~~g~~lld~I~d 77 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSN--EEIADVFEEWNKG-ELRSYLIEITADILRKKDETGGPLLDKILD 77 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--H--HHHHHHHHHHHTT-TT-BHHHHHHHHHHT-B-TTSSBGGGGB-S
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccch--hHHHHHHHHHCcC-chhhHHHHHHHHHHhhccCccCcchhhhCC
Confidence 7999999999999999999999999996543111 3566667779999 689999999999999877666799999999
Q ss_pred HHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010637 408 REMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 408 ~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~~ 450 (505)
...++++| ||++++|++.|||+|+|++||+ ++++++.+|..
T Consensus 78 ~a~~kGtG--~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~ 120 (291)
T PF00393_consen 78 KAGQKGTG--KWTVQEALELGVPAPTIAAAVFARFLSAQKEERVA 120 (291)
T ss_dssp ----BSHH--HHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCCCCcc--chHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHH
Confidence 99999999 9999999999999999999999 77777777644
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-22 Score=202.10 Aligned_cols=260 Identities=15% Similarity=0.181 Sum_probs=184.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.|+|+|||+|.||.+||.+|+++||+|.+|+|++. .++++++++ +|+||+++|+. .
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------------------~~~~~~~~~---advvi~~vp~~-~ 59 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------------------LSLAAVLAD---ADVIVSAVSMK-G 59 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------------------CCHHHHHhc---CCEEEEECChH-H
Confidence 36899999999999999999999999999999853 256677766 99999999994 8
Q ss_pred HHHHHHHHHhc-CCCCcEEEecCC-CCchhHHHHHHHHHHCCCeEEeCCCC--CCHHHhh---cC--C-ccccCCCHHHH
Q 010637 86 VDQTIAALSEH-MSPGDCIIDGGN-EWYLNTERRIHEASQKGLLYLGMGVS--GGEEGAR---HG--P-SLMPGGSFEAY 155 (505)
Q Consensus 86 v~~vl~~l~~~-l~~g~iIId~st-~~~~~t~~~~~~l~~~gi~~i~~pvs--Gg~~~a~---~G--~-~im~gg~~ea~ 155 (505)
++.+++.+.++ +.++.+||++++ ..|.......+.+.. +|.+.|+. +|+..+. .+ . .+++|++.+++
T Consensus 60 ~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~---~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~ 136 (308)
T PRK14619 60 VRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQA---AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAA 136 (308)
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHH---HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHH
Confidence 99999888774 788999999988 444444334444433 24456663 3433221 22 3 78889999999
Q ss_pred HHHHHHHHHHhcccCCCCceEEeCC-----------------CcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHH
Q 010637 156 NNIRDILQKVAAQVDDGPCVTYIGE-----------------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (505)
Q Consensus 156 ~~v~~ll~~iga~~~~~~~v~~vG~-----------------~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~ 218 (505)
++++++|+..+ ..+++.++ .|.+..+|+.+|......+++++|+..++++.| ++++
T Consensus 137 ~~v~~ll~~~~------~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G-~~~~ 209 (308)
T PRK14619 137 ETVQQIFSSER------FRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLG-AQTE 209 (308)
T ss_pred HHHHHHhCCCc------EEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-CCcc
Confidence 99999999887 45654443 233455569999999999999999999999999 9988
Q ss_pred HHHHHHHHhccCCcchhHHhhhhhhccccccCCCchh------HHHHHhhhCCCchH----HHHHHHHHHcCCCcchHHH
Q 010637 219 ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGEL------VDKILDKTGMKGTG----KWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 219 ~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~------l~~i~~~~~~kgtg----~~~~~~A~~~gvp~p~i~~ 288 (505)
.+.++ .|.+++++.. ..+.. ++|..+|. ++.+.+...++.+| +.+.+.+.++|+++|++.+
T Consensus 210 t~~~~-----~g~gd~~~t~--~~~~~--rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~ 280 (308)
T PRK14619 210 TFYGL-----SGLGDLLATC--TSPLS--RNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQ 280 (308)
T ss_pred ccccc-----cchhhhheee--cCCCC--ccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88764 2555554411 11111 22333333 33334434333333 3677889999999999985
Q ss_pred HHHHHHHhcchHHHHHHHHHhc
Q 010637 289 SLDCRYLSGLKEEREKAAKVLK 310 (505)
Q Consensus 289 av~~r~~s~~~~~r~~~~~~~~ 310 (505)
+ .+.+....+.+.....++.
T Consensus 281 v--~~i~~~~~~~~~~~~~l~~ 300 (308)
T PRK14619 281 V--YRLLQGEITPQQALEELME 300 (308)
T ss_pred H--HHHHcCCCCHHHHHHHHHc
Confidence 3 4556666677777777764
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-22 Score=197.54 Aligned_cols=117 Identities=12% Similarity=0.229 Sum_probs=104.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHH---HHHHhcCCCceecccHHHHHHHHhcCCC-CCCCc
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGE---LARIWKGGCIIRAVFLDRIKKAYQRNPN-LASLV 401 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~---i~~iW~~Gciirs~lL~~i~~~~~~~~~-~~~ll 401 (505)
++||||||||||||||+||.++|.|++||..- +|+.++ |+.-||+| .+.|||++++.++|+.+++ .++.|
T Consensus 177 GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~l-----gls~~ei~~vF~~WN~g-eL~SYLIeIT~~IL~~kD~~~~kpl 250 (473)
T COG0362 177 GAGHFVKMVHNGIEYGDMQLIAEAYDILKDGL-----GLSAEEIAEVFEEWNKG-ELDSYLIEITADILRKKDEEGGKPL 250 (473)
T ss_pred CCCceeeeeecCchHHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHhccC-cchHHHHHHHHHHHhhcCcccCCch
Confidence 58999999999999999999999999999654 355555 55559999 8999999999999998654 45699
Q ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010637 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~~ 450 (505)
+|.+++.+.||+++ ||+++.|+++|+|+|.|++|++ |+++++.+|..
T Consensus 251 vd~ILD~AgQKGTG--kWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~ 299 (473)
T COG0362 251 VDKILDKAGQKGTG--KWTVISALDLGVPLTLITEAVFARYLSSLKDERVA 299 (473)
T ss_pred HHHHHHHhcCCCcc--hhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999 9999999999999999999999 89999888743
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-20 Score=175.17 Aligned_cols=197 Identities=32% Similarity=0.505 Sum_probs=144.3
Q ss_pred HHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcC
Q 010637 64 RDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHG 143 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G 143 (505)
+++...|..-|+||--=.+ .-++.+..-...-.+|--++|++|+--..- .++|..| +.||++.+...
T Consensus 78 ~~la~~L~~GDivIDGGNS--~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G-------~~~G~~l----MiGG~~~a~~~ 144 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNS--NYKDSLRRAKLLAEKGIHFLDVGTSGGVWG-------AERGYCL----MIGGDEEAVER 144 (300)
T ss_pred HHHHhhcCCCCEEEECCcc--chHHHHHHHHHHHhcCCeEEeccCCCCchh-------hhcCceE----EecCcHHHHHH
Confidence 4455556667988876543 345666554445568889999999853222 2345544 35565554331
Q ss_pred CccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCC--HHHHH
Q 010637 144 PSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLS--NAELA 221 (505)
Q Consensus 144 ~~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~--~~~i~ 221 (505)
- +..++.+.+ ..-| ..|+||.|+|||+|||||+|||++||+++|.+.++++.- .| .+++.
T Consensus 145 ~-------~pif~~lA~--ge~G--------yl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~-fD~D~~~VA 206 (300)
T COG1023 145 L-------EPIFKALAP--GEDG--------YLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSP-FDYDLEAVA 206 (300)
T ss_pred H-------HHHHHhhCc--CcCc--------cccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCC-CCCCHHHHH
Confidence 1 111111111 0334 789999999999999999999999999999999999865 54 55555
Q ss_pred HHHHHhccCC-cchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchH
Q 010637 222 EIFDEWNKGE-LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300 (505)
Q Consensus 222 ~v~~~~~~g~-~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~ 300 (505)
++ ||.|+ .+|||++.+...+++ + .-++.+.+.+...|+||||+++|.++|||+|+|+.|+..||.|...+
T Consensus 207 ~v---W~hGSVIrSWLldLt~~Af~~-d-----~~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~d 277 (300)
T COG1023 207 EV---WNHGSVIRSWLLDLTAEAFKK-D-----PDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDD 277 (300)
T ss_pred HH---HhCcchHHHHHHHHHHHHHhh-C-----CCHHHhcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccchh
Confidence 55 88865 689999999988874 2 25789999999999999999999999999999999999999996553
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-19 Score=183.38 Aligned_cols=197 Identities=12% Similarity=0.095 Sum_probs=159.0
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChHHH-----HHHHHhhcccCCCCeeeeC
Q 010637 7 SRIGLAGLAVM--------------------GQNLALNVAEKGFPISVYNRTTSKV-----DETLDRAHREGQLPLTGHY 61 (505)
Q Consensus 7 ~~IgIIGlG~M--------------------G~~lA~~La~~G~~V~v~dr~~~~~-----~~l~~~~~~~g~~~i~~~~ 61 (505)
|||.|+|+|+- |.+||.+|+++||+|++|||++++. +.+... ++..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~-------Gi~~as 73 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDA-------GVKVVS 73 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHC-------CCEEeC
Confidence 57888888864 7889999999999999999998743 333332 367778
Q ss_pred CHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhH-HHHHHHHH----HCCCeEEe-CCCCC
Q 010637 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEAS----QKGLLYLG-MGVSG 135 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t-~~~~~~l~----~~gi~~i~-~pvsG 135 (505)
++.++++. +|+||+|+|.+..+++++.++.+.++++.+|||+||+.+... +.+.+.+. ..|+++.. +++.|
T Consensus 74 d~~eaa~~---ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~G 150 (342)
T PRK12557 74 DDAEAAKH---GEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPG 150 (342)
T ss_pred CHHHHHhC---CCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccc
Confidence 88888876 999999999976589999999999999999999999988876 45555554 34666653 45556
Q ss_pred CHHHhhcCCccccC--------CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHH
Q 010637 136 GEEGARHGPSLMPG--------GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYD 207 (505)
Q Consensus 136 g~~~a~~G~~im~g--------g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~ 207 (505)
++.+.. .+|.| ++++.+++++++|+.++ ..+++++ .|.++.+|+++|.+.+..++.++|++.
T Consensus 151 ae~g~l---~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G------~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~ 220 (342)
T PRK12557 151 TPQHGH---YVIAGKTTNGTELATEEQIEKCVELAESIG------KEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYS 220 (342)
T ss_pred cccchh---eEEeCCCcccccCCCHHHHHHHHHHHHHcC------CEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543322 34444 49999999999999999 7787777 599999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHH
Q 010637 208 VLKHVGGLSNAELAEIF 224 (505)
Q Consensus 208 l~~~~g~l~~~~i~~v~ 224 (505)
++++.| .++.++.+-+
T Consensus 221 l~~~~~-~~p~~~~~~~ 236 (342)
T PRK12557 221 VGTKII-KAPKEMIEKQ 236 (342)
T ss_pred HHHHhC-CCHHHHHHHH
Confidence 999999 8888776654
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-19 Score=191.57 Aligned_cols=195 Identities=14% Similarity=0.143 Sum_probs=151.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhh
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLS 69 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~i~~~~s~~e~v~~ 69 (505)
+.++|||||+|.||.+||.+|+++||+|.+||+++++.+.+.+.. ...+ ++..++++++++++
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g--~i~~~~~~~ea~~~ 80 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEG--RLTFCASLAEAVAG 80 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhh--ceEeeCCHHHHhcC
Confidence 456899999999999999999999999999999999877653210 0001 36778899888877
Q ss_pred cCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccc
Q 010637 70 IQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLM 147 (505)
Q Consensus 70 l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im 147 (505)
+|+|++++|+..+++..+ .++.+.++++ .||++||+.+..+ .+.+.+..++..++++|+... ..++ ..+
T Consensus 81 ---aD~Vieavpe~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvev 151 (495)
T PRK07531 81 ---ADWIQESVPERLDLKRRVLAEIDAAARPD-ALIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVEL 151 (495)
T ss_pred ---CCEEEEcCcCCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEE
Confidence 999999999987777755 6677766665 4667777766544 666777777778888887632 3445 667
Q ss_pred cCCC---HHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhH-HHHHHHHHHHhCCCCHHHHHHH
Q 010637 148 PGGS---FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQL-ISEAYDVLKHVGGLSNAELAEI 223 (505)
Q Consensus 148 ~gg~---~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~-i~Ea~~l~~~~g~l~~~~i~~v 223 (505)
++|+ ++++++++++|+.+| +.+++++. .++|.+...++.. ++|++.|++++| +++++++++
T Consensus 152 v~g~~t~~e~~~~~~~~~~~lG------~~~v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~-~s~~~id~~ 216 (495)
T PRK07531 152 VGGGKTSPETIRRAKEILREIG------MKPVHIAK--------EIDAFVGDRLLEALWREALWLVKDGI-ATTEEIDDV 216 (495)
T ss_pred cCCCCCCHHHHHHHHHHHHHcC------CEEEeecC--------CCcchhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 7775 799999999999999 88889874 5555555555666 499999999988 999999999
Q ss_pred HH
Q 010637 224 FD 225 (505)
Q Consensus 224 ~~ 225 (505)
+.
T Consensus 217 ~~ 218 (495)
T PRK07531 217 IR 218 (495)
T ss_pred Hh
Confidence 84
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-20 Score=185.52 Aligned_cols=121 Identities=10% Similarity=0.147 Sum_probs=108.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccH
Q 010637 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (505)
Q Consensus 325 ~~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~ 404 (505)
.++|||||||||||||++||.++|.|++|+.+....+ ..+++++.-||.| .+.|+|++++.++|+-+++....|+|+
T Consensus 180 ~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~--~eia~vF~~WN~g-eleSfLieIT~dIlk~~d~~G~~lv~k 256 (487)
T KOG2653|consen 180 GGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSN--DEIAEVFDDWNKG-ELESFLIEITADILKFKDEDGKPLVDK 256 (487)
T ss_pred CCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcH--HHHHHHHHhhccc-chhHHHHHHhHHHhheeccCCChHHHH
Confidence 4689999999999999999999999999998765443 5677777779999 899999999999998776666789999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010637 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~~ 450 (505)
+.+...+|+++ +|+|+.|+++|+|+|.|.+|++ ++++++.+|..
T Consensus 257 I~D~aGqKGTG--kwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ 302 (487)
T KOG2653|consen 257 ILDKAGQKGTG--KWTVISALELGVPVTLIGEAVFARCLSALKDERVR 302 (487)
T ss_pred HHhhhcCCCcc--HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999 88888888754
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-19 Score=176.74 Aligned_cols=193 Identities=14% Similarity=0.155 Sum_probs=146.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh-------hcccCC----------CCeeeeCCHHHHHhh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQ----------LPLTGHYTPRDFVLS 69 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~----------~~i~~~~s~~e~v~~ 69 (505)
.+|+|||+|.||.+||.+|+++||+|++||+++++++++.+. +...+. .+++.+.++++.++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 579999999999999999999999999999999988776531 110000 035667888887776
Q ss_pred cCCCcEEEEEcCCCchHHHH-HHHHHhcCCCCcEE-EecCCCCchhHHHHHHHH-HHCCCeEEeCCCCCCHHHhhcCC-c
Q 010637 70 IQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCI-IDGGNEWYLNTERRIHEA-SQKGLLYLGMGVSGGEEGARHGP-S 145 (505)
Q Consensus 70 l~~advIil~vp~~~~v~~v-l~~l~~~l~~g~iI-Id~st~~~~~t~~~~~~l-~~~gi~~i~~pvsGg~~~a~~G~-~ 145 (505)
+|+||+|+|++..++.. +.++.+.++++.+| +++||..+....+..+.. +..|+||+ .|++++ + .
T Consensus 82 ---aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lv 150 (288)
T PRK09260 82 ---ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLV 150 (288)
T ss_pred ---CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceE
Confidence 99999999998776655 47788888888866 688887765543332221 12488888 788764 4 6
Q ss_pred cccCC---CHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHH
Q 010637 146 LMPGG---SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 146 im~gg---~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
.|++| +++++++++++++.++ +.++++++ ..|+ +.|.+.+ .+++|++.+++++. .++++++.
T Consensus 151 e~v~g~~t~~~~~~~~~~~l~~lg------~~~v~v~d-~~Gf----~~nRl~~---~~~~ea~~~~~~gv-~~~~~iD~ 215 (288)
T PRK09260 151 ELIRGLETSDETVQVAKEVAEQMG------KETVVVNE-FPGF----VTSRISA---LVGNEAFYMLQEGV-ATAEDIDK 215 (288)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcC------CeEEEecC-cccH----HHHHHHH---HHHHHHHHHHHcCC-CCHHHHHH
Confidence 67777 9999999999999999 88999985 3444 4465544 45699999999876 78999999
Q ss_pred HHH
Q 010637 223 IFD 225 (505)
Q Consensus 223 v~~ 225 (505)
++.
T Consensus 216 ~~~ 218 (288)
T PRK09260 216 AIR 218 (288)
T ss_pred HHH
Confidence 874
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-17 Score=164.97 Aligned_cols=236 Identities=16% Similarity=0.136 Sum_probs=165.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEE-eCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVY-NRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~----~V~v~-dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|||||||+|.||.+|+.+|.++|+ +|++| ||++++.+.+.+. ++..+.++.++++. +|+||+|+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~-------g~~~~~~~~e~~~~---aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSL-------GVKTAASNTEVVKS---SDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHc-------CCEEeCChHHHHhc---CCEEEEEEC
Confidence 589999999999999999999998 89999 9999998877654 35677888888876 999999997
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCHHHhhcCC-ccccCCCHHHHHHHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPGGSFEAYNNIR 159 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~~~a~~G~-~im~gg~~ea~~~v~ 159 (505)
+ ..+++++.++.+.+.++++||+..++..... +.+.+... +++. +|..+...+..... +...+++++.++.++
T Consensus 71 ~-~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~--l~~~~~~~--~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 145 (266)
T PLN02688 71 P-QVVKDVLTELRPLLSKDKLLVSVAAGITLAD--LQEWAGGR--RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVA 145 (266)
T ss_pred c-HHHHHHHHHHHhhcCCCCEEEEecCCCcHHH--HHHHcCCC--CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHH
Confidence 6 5799999999888889999998766553332 23332221 5664 77766554433322 334456889999999
Q ss_pred HHHHHHhcccCCCCceEEeCC---------CcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccC
Q 010637 160 DILQKVAAQVDDGPCVTYIGE---------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKG 230 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~vG~---------~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g 230 (505)
++|+.+| . ++++++ .|+|.. +.+.+++.++|+ +.+.| +++++..+++.+ +
T Consensus 146 ~l~~~~G------~-~~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~G-l~~~~a~~~~~~---~ 204 (266)
T PLN02688 146 TLFGAVG------K-IWVVDEKLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAG-LPRDVALSLAAQ---T 204 (266)
T ss_pred HHHHhCC------C-EEEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH---H
Confidence 9999999 6 777743 455544 356678888888 67778 999999999853 2
Q ss_pred CcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHH
Q 010637 231 ELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 231 ~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
...+.. .+...+ ..+ -+.+......-||..-.+....+.|++-.++.+
T Consensus 205 ~~gs~~------l~~~~~-~~~---~~l~~~v~spgG~t~~~l~~l~~~g~~~~~~~a 252 (266)
T PLN02688 205 VLGAAK------MVLETG-KHP---GQLKDMVTSPGGTTIAGVHELEKGGFRAALMNA 252 (266)
T ss_pred HHHHHH------HHHhcC-CCH---HHHHHhCCCCchHHHHHHHHHHHCChHHHHHHH
Confidence 222221 122111 122 233333444456666666777788888665553
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.4e-18 Score=168.75 Aligned_cols=200 Identities=16% Similarity=0.156 Sum_probs=150.5
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHH-----------HHhhcccCC------CCeeeeCCH
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDET-----------LDRAHREGQ------LPLTGHYTP 63 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l-----------~~~~~~~g~------~~i~~~~s~ 63 (505)
|++. +.+|||||+|.||.+||.+|+.+||+|++||++++.++.. .+.+..... -++++++++
T Consensus 1 ~~~~-~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~ 79 (286)
T PRK07819 1 MSDA-IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL 79 (286)
T ss_pred CCCC-ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH
Confidence 4444 3589999999999999999999999999999999987662 222210000 045677888
Q ss_pred HHHHhhcCCCcEEEEEcCCCchHHHHH-HHHHhcC-CCCcEEEecCCCCchhHHHHHHHHHHC--CCeEEe-CCCCCCHH
Q 010637 64 RDFVLSIQRPRSVIILVKAGSPVDQTI-AALSEHM-SPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLG-MGVSGGEE 138 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v~~vl-~~l~~~l-~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~i~-~pvsGg~~ 138 (505)
++ ++. +|+||.|+|++.+++..+ ..+...+ +++.++++.|++.+..........+++ |+||++ +|+++..+
T Consensus 80 ~~-~~~---~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvE 155 (286)
T PRK07819 80 GD-FAD---RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVE 155 (286)
T ss_pred HH-hCC---CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEE
Confidence 54 454 999999999999998887 4555555 789999999998887766655555555 889998 46666553
Q ss_pred HhhcCCccccCCCHHHHHHHHHHHH-HHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCH
Q 010637 139 GARHGPSLMPGGSFEAYNNIRDILQ-KVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 139 ~a~~G~~im~gg~~ea~~~v~~ll~-~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
- ....++++++++++.+++. .++ +.++.+++ ..|.. -|.+ ...+++|++.+++++. .++
T Consensus 156 l-----v~~~~T~~~~~~~~~~~~~~~lg------k~pv~v~d-~pGfi----~nRi---~~~~~~Ea~~ll~eGv-~~~ 215 (286)
T PRK07819 156 L-----VPTLVTSEATVARAEEFASDVLG------KQVVRAQD-RSGFV----VNAL---LVPYLLSAIRMVESGF-ATA 215 (286)
T ss_pred E-----eCCCCCCHHHHHHHHHHHHHhCC------CCceEecC-CCChH----HHHH---HHHHHHHHHHHHHhCC-CCH
Confidence 1 3446789999999999988 599 78888865 44554 4554 4556699999999877 889
Q ss_pred HHHHHHHH
Q 010637 218 AELAEIFD 225 (505)
Q Consensus 218 ~~i~~v~~ 225 (505)
++++.++.
T Consensus 216 ~dID~~~~ 223 (286)
T PRK07819 216 EDIDKAMV 223 (286)
T ss_pred HHHHHHHH
Confidence 99999974
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.7e-18 Score=181.71 Aligned_cols=189 Identities=14% Similarity=0.163 Sum_probs=146.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHH-----------HHhhcccC------CCCeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDET-----------LDRAHREG------QLPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l-----------~~~~~~~g------~~~i~~~~s~~e~v~ 68 (505)
..+|||||+|.||.+||.+|+.+||+|++||++++++++. .+.+.-.. .-+++++.+++++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~- 85 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLA- 85 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhC-
Confidence 4679999999999999999999999999999999988774 22221000 00467888887754
Q ss_pred hcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEE-ecCCCCchhHHHHHHHHH--H--CCCeEEe-CCCCCCHHHhh
Q 010637 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCII-DGGNEWYLNTERRIHEAS--Q--KGLLYLG-MGVSGGEEGAR 141 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iII-d~st~~~~~t~~~~~~l~--~--~gi~~i~-~pvsGg~~~a~ 141 (505)
. +|+||.|||++.++++.+ .++...++++.++. ++||..+. +++..+. + .|+||++ +|++.
T Consensus 86 ~---aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~~------ 153 (507)
T PRK08268 86 D---CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLMK------ 153 (507)
T ss_pred C---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccCe------
Confidence 4 999999999999999887 56667777888884 77777664 3444333 2 3899999 67772
Q ss_pred cCCccccC---CCHHHHHHHHHHHHHHhcccCCCCceEEeCC-CcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCH
Q 010637 142 HGPSLMPG---GSFEAYNNIRDILQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 142 ~G~~im~g---g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~-~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
-..+++ +++++++.+.++++.++ +.++++++ +| ++.|.+.. ..++|++.++++.+ +++
T Consensus 154 --LvEvv~g~~Ts~~~~~~~~~l~~~lg------k~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~-~~~ 215 (507)
T PRK08268 154 --LVEVVSGLATDPAVADALYALARAWG------KTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGV-ADP 215 (507)
T ss_pred --eEEEeCCCCCCHHHHHHHHHHHHHcC------CceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCC-CCH
Confidence 244454 59999999999999999 88999986 45 46676654 47799999999988 999
Q ss_pred HHHHHHHH
Q 010637 218 AELAEIFD 225 (505)
Q Consensus 218 ~~i~~v~~ 225 (505)
+++++++.
T Consensus 216 ~~iD~al~ 223 (507)
T PRK08268 216 ATIDAILR 223 (507)
T ss_pred HHHHHHHH
Confidence 99999985
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=167.36 Aligned_cols=185 Identities=14% Similarity=0.191 Sum_probs=132.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChH-HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G----~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|+|+|||+|.||.+|+.+|.++| ++|.+|||+++ +.+.+.... ++..+.++.++++. +|+||+|||
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDvVilav~ 74 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY------GVKGTHNKKELLTD---ANILFLAMK 74 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc------CceEeCCHHHHHhc---CCEEEEEeC
Confidence 58999999999999999999998 88999999864 566665532 25667888888776 999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEec-CCCCchhHHHHHHHHHHCCCeEEeCCCCCC---HHHhh-cCCccccCCC---HH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLYLGMGVSGG---EEGAR-HGPSLMPGGS---FE 153 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~-st~~~~~t~~~~~~l~~~gi~~i~~pvsGg---~~~a~-~G~~im~gg~---~e 153 (505)
+. .+.++++++.+.+.++.+||++ ++..+...++ .+ ..+ +||+++ ...+. .|.+++++++ ++
T Consensus 75 p~-~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~-~~~-----~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~ 144 (279)
T PRK07679 75 PK-DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LL-QKD-----VPIIRAMPNTSAAILKSATAISPSKHATAE 144 (279)
T ss_pred HH-HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---Hc-CCC-----CeEEEECCCHHHHHhcccEEEeeCCCCCHH
Confidence 85 7888889998888889999997 5554433333 22 222 334443 23444 3447777765 66
Q ss_pred HHHHHHHHHHHHhcccCCCCceE------E--eCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010637 154 AYNNIRDILQKVAAQVDDGPCVT------Y--IGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 154 a~~~v~~ll~~iga~~~~~~~v~------~--vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~ 225 (505)
.++.++++|+.+| .++. + ++..|+|.. +.+..+..+.|+ +.+.| ++.++..+++.
T Consensus 145 ~~~~v~~l~~~~G------~~~~v~e~~~~~~~a~~Gsgpa-------~~~~~~eal~e~---~~~~G-l~~~~a~~~~~ 207 (279)
T PRK07679 145 HIQTAKALFETIG------LVSVVEEEDMHAVTALSGSGPA-------YIYYVVEAMEKA---AKKIG-LKEDVAKSLIL 207 (279)
T ss_pred HHHHHHHHHHhCC------cEEEeCHHHhhhHHHhhcCHHH-------HHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 8899999999999 5444 4 555566554 233344444444 67888 99999999986
Q ss_pred Hh
Q 010637 226 EW 227 (505)
Q Consensus 226 ~~ 227 (505)
+.
T Consensus 208 ~~ 209 (279)
T PRK07679 208 QT 209 (279)
T ss_pred HH
Confidence 43
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-17 Score=166.85 Aligned_cols=206 Identities=19% Similarity=0.217 Sum_probs=165.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh---------------hcccCCCCeeeeCCHHHHHhhc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR---------------AHREGQLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~---------------~~~~g~~~i~~~~s~~e~v~~l 70 (505)
.++|||||||.+|.++|..++++|++|.++|.++.+++.+... ....| +++.+++++++..
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g--~lraTtd~~~l~~-- 84 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESG--KLRATTDPEELKE-- 84 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcC--CceEecChhhccc--
Confidence 4689999999999999999999999999999999998776531 11112 4677777777653
Q ss_pred CCCcEEEEEcCCCc---------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC--CCeE-EeCCCCCCHH
Q 010637 71 QRPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLY-LGMGVSGGEE 138 (505)
Q Consensus 71 ~~advIil~vp~~~---------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~-i~~pvsGg~~ 138 (505)
||++|+|||++- .+.+..+.+.+.|++|++||--||+.|.+|+++...+.+. |..| .|..+.-.|+
T Consensus 85 --~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPE 162 (436)
T COG0677 85 --CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPE 162 (436)
T ss_pred --CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCcc
Confidence 999999998752 4667778999999999999999999999999999877664 3433 1222222333
Q ss_pred HhhcCC---------ccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHH
Q 010637 139 GARHGP---------SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVL 209 (505)
Q Consensus 139 ~a~~G~---------~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~ 209 (505)
...-|. .++.|-+++..+.+..+++.+- ..+..+.+.-.+.++|+..|.+...++++++|..-++
T Consensus 163 Rv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv------~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~ 236 (436)
T COG0677 163 RVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIV------EGVIPVTSARTAEMVKLTENTFRDVNIALANELALIC 236 (436)
T ss_pred ccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHhe------EEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 333332 3445557888889999999998 5677888889999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 010637 210 KHVGGLSNAELAEIF 224 (505)
Q Consensus 210 ~~~g~l~~~~i~~v~ 224 (505)
.+.| ++..++.++.
T Consensus 237 ~~~G-IdvwevIeaA 250 (436)
T COG0677 237 NAMG-IDVWEVIEAA 250 (436)
T ss_pred HHhC-CcHHHHHHHh
Confidence 9999 9999888875
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=170.48 Aligned_cols=262 Identities=20% Similarity=0.183 Sum_probs=164.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhccc----CC------CCeeeeCCHHHHHhhcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----GQ------LPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~----g~------~~i~~~~s~~e~v~~l~~ad 74 (505)
|||+|+|||+|.||..+|..|+++||+|++|+|++. .+.+.+.+... +. .++....++ +.+. .+|
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~D 75 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA---TAD 75 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhcc---CCC
Confidence 467999999999999999999999999999999754 45555433210 00 012233444 3333 499
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC--C---CCCCHHHhh---cCCcc
Q 010637 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM--G---VSGGEEGAR---HGPSL 146 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~--p---vsGg~~~a~---~G~~i 146 (505)
+||++||+. .++++++.+.+.+.++.+|++++|+.. ..+.+.+.+.+. +++.+ + +++++..+. .|+ +
T Consensus 76 ~vil~vk~~-~~~~~~~~l~~~~~~~~iii~~~nG~~-~~~~l~~~~~~~--~~~~g~~~~~~~~~~pg~~~~~~~g~-l 150 (341)
T PRK08229 76 LVLVTVKSA-ATADAAAALAGHARPGAVVVSFQNGVR-NADVLRAALPGA--TVLAGMVPFNVISRGPGAFHQGTSGA-L 150 (341)
T ss_pred EEEEEecCc-chHHHHHHHHhhCCCCCEEEEeCCCCC-cHHHHHHhCCCC--cEEEEEEEEEEEecCCceEEecCCCc-e
Confidence 999999986 678889999999999999999988653 334455554432 23332 2 233332222 333 2
Q ss_pred ccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhH--------------------hhHHHHHH
Q 010637 147 MPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGD--------------------MQLISEAY 206 (505)
Q Consensus 147 m~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~--------------------~~~i~Ea~ 206 (505)
..+ +.+.++++.++|+..+ ..+.+.++.+.+.+.|++.|.+.... ..++.|++
T Consensus 151 ~~~-~~~~~~~~~~~l~~~g------~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~ 223 (341)
T PRK08229 151 AIE-ASPALRPFAAAFARAG------LPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREAL 223 (341)
T ss_pred Eec-CCchHHHHHHHHHhcC------CCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHH
Confidence 222 3355788999999888 67889999999999999999643333 37899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHhccC--CcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCc-------hHHHHHHHHH
Q 010637 207 DVLKHVGGLSNAELAEIFDEWNKG--ELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKG-------TGKWTVQQAA 277 (505)
Q Consensus 207 ~l~~~~g~l~~~~i~~v~~~~~~g--~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kg-------tg~~~~~~A~ 277 (505)
.++++.| ++++.+.++..++... .+.+.+++.....+...+ +... ..+++|....- .| +.++.|+
T Consensus 224 ~va~a~G-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~Sm~~D~~~~r~tEi~~i~G-~i~~~a~ 297 (341)
T PRK08229 224 RVLKAAG-IRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAID-PLAR---SSMSDDLAAGRATEIDWING-EIVRLAG 297 (341)
T ss_pred HHHHHcC-CCccccCCCChhhhhhhhcCChHHHHHHHHHhhccC-CccC---chHHHHHHcCCcchHHHHhh-HHHHHHH
Confidence 9999998 9876543332211100 122333332222111111 1110 11222221000 12 6889999
Q ss_pred HcCCCcchHHHH
Q 010637 278 ELSVAAPTIAAS 289 (505)
Q Consensus 278 ~~gvp~p~i~~a 289 (505)
++|+|+|+....
T Consensus 298 ~~gv~~P~~~~~ 309 (341)
T PRK08229 298 RLGAPAPVNARL 309 (341)
T ss_pred HcCCCCcHHHHH
Confidence 999999998864
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-18 Score=169.48 Aligned_cols=288 Identities=16% Similarity=0.195 Sum_probs=199.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCC-------CeeeeCCHHHHHhhcCCCcEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL-------PLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~-------~i~~~~s~~e~v~~l~~advIil 78 (505)
+++|+|||.|.+|++||..|+++||+|.+|.|+++..+++.....+..++ ++..+++++++++. +|+|++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~---ad~iv~ 77 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG---ADIIVI 77 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc---CCEEEE
Confidence 36899999999999999999999999999999999998887653332111 46778899999887 999999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHH-HHHHC-C---CeEEeCCCCCCHHHhhcCC-c-cccCCC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH-EASQK-G---LLYLGMGVSGGEEGARHGP-S-LMPGGS 151 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~-~l~~~-g---i~~i~~pvsGg~~~a~~G~-~-im~gg~ 151 (505)
+||. ..++++++++.+.+.++.+++.++.+....+.++.. .+++. + +-++..|-. ..+-++.-| . .+.+-|
T Consensus 78 avPs-~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~-A~EVa~g~pta~~vas~d 155 (329)
T COG0240 78 AVPS-QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF-AKEVAQGLPTAVVVASND 155 (329)
T ss_pred ECCh-HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH-HHHHhcCCCcEEEEecCC
Confidence 9999 589999999998999999999999987776555443 33332 3 233333322 244555555 4 445568
Q ss_pred HHHHHHHHHHHHHHh-----------cccCC-CCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHH
Q 010637 152 FEAYNNIRDILQKVA-----------AQVDD-GPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 152 ~ea~~~v~~ll~~ig-----------a~~~~-~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
++..++++.+|..=. .++.+ -|+|+-++. |....+.+-.|+-.+.+...++|+-.+....| -.++.
T Consensus 156 ~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~-Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG-~~~~T 233 (329)
T COG0240 156 QEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAA-GIADGLGLGDNAKAALITRGLAEMTRLGVALG-AKPET 233 (329)
T ss_pred HHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHH-HHHHHhhcChhHHHHHHHhHHHHHHHHHHHhC-CCcch
Confidence 888888988886511 11101 055555543 66666778889999999999999999999999 66775
Q ss_pred HHHHHHHhccCCcchhHHhhhhhhccccccC----CCchhHHHHHhhhCCCchHHHHH----HHHHHcCCCcchHHHHHH
Q 010637 220 LAEIFDEWNKGELESFLVEITADIFKVKDEY----GEGELVDKILDKTGMKGTGKWTV----QQAAELSVAAPTIAASLD 291 (505)
Q Consensus 220 i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~----~~~~~l~~i~~~~~~kgtg~~~~----~~A~~~gvp~p~i~~av~ 291 (505)
+... .|.++ |+-+......++..| ..+..++..+...+|.-+|..++ +.|+++|+++|++.+ |
T Consensus 234 ~~gL-----sGlGD--LilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~-V- 304 (329)
T COG0240 234 FMGL-----SGLGD--LILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEA-V- 304 (329)
T ss_pred hccc-----ccccc--eeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHH-H-
Confidence 5433 23333 211111211211111 23356677777788888886666 468899999998874 4
Q ss_pred HHHHhcchHHHHHHHHHh
Q 010637 292 CRYLSGLKEEREKAAKVL 309 (505)
Q Consensus 292 ~r~~s~~~~~r~~~~~~~ 309 (505)
.|.+-..++.+..+..++
T Consensus 305 y~vl~~~~~~~~~~~~L~ 322 (329)
T COG0240 305 YRVLYEGLDPKEAIEELM 322 (329)
T ss_pred HHHHhCCCCHHHHHHHHh
Confidence 555555555666665555
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=170.34 Aligned_cols=254 Identities=13% Similarity=0.087 Sum_probs=182.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChHHHHHHHHhhcc---cC---------CCCeeeeCCHHHHHhhcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHR---EG---------QLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~---~g---------~~~i~~~~s~~e~v~~l~ 71 (505)
||+|+|||+|.+|..+|..|+++ |++|.++|+++++++.+.+.... .| +.++..+++..+.+..
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~-- 78 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE-- 78 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc--
Confidence 47899999999999999999988 47899999999999887643211 00 0036677787777766
Q ss_pred CCcEEEEEcCCCc--------------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC--C--CeEEeCCC
Q 010637 72 RPRSVIILVKAGS--------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--G--LLYLGMGV 133 (505)
Q Consensus 72 ~advIil~vp~~~--------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--g--i~~i~~pv 133 (505)
+|++|+|||++. .++++++.+.+.++++++||.-||..+.+++++...+.+. | +++.-+|-
T Consensus 79 -advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 79 -ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred -CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 999999997543 5778889999999999999999999999999998877753 3 34445663
Q ss_pred CCCHHHhhc---CC-ccccCCC-----HHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHH
Q 010637 134 SGGEEGARH---GP-SLMPGGS-----FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISE 204 (505)
Q Consensus 134 sGg~~~a~~---G~-~im~gg~-----~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~E 204 (505)
.--+-.+.. -+ .+++||. +++.+.++.++..+.. ..++.+.+.-++.++|++.|.+.+..+++++|
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~-----~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NE 232 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVP-----EERIITTNLWSAELSKLAANAFLAQRISSVNA 232 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhc-----CCCEEecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222221 22 5667874 3467888889888861 13455566789999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhccCC--cchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCC
Q 010637 205 AYDVLKHVGGLSNAELAEIFDEWNKGE--LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVA 282 (505)
Q Consensus 205 a~~l~~~~g~l~~~~i~~v~~~~~~g~--~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp 282 (505)
...++++.| +|..++.+.+ +... +..|+ .-.-.++++ -+-+|.. ..+..|.++|++
T Consensus 233 la~lce~~g-iD~~eV~~~~---~~d~rig~~~l--------~PG~G~GG~----ClpkD~~------~L~~~a~~~g~~ 290 (473)
T PLN02353 233 MSALCEATG-ADVSQVSHAV---GKDSRIGPKFL--------NASVGFGGS----CFQKDIL------NLVYICECNGLP 290 (473)
T ss_pred HHHHHHHhC-CCHHHHHHHh---CCCCcCCCCCC--------CCCCCCCCc----chhhhHH------HHHHHHHHcCCc
Confidence 999999998 9999998886 2221 11222 111113332 3334542 455778889988
Q ss_pred --cchHHHH
Q 010637 283 --APTIAAS 289 (505)
Q Consensus 283 --~p~i~~a 289 (505)
.+++.++
T Consensus 291 ~~~~l~~~~ 299 (473)
T PLN02353 291 EVAEYWKQV 299 (473)
T ss_pred hHHHHHHHH
Confidence 6666654
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=160.00 Aligned_cols=254 Identities=18% Similarity=0.177 Sum_probs=188.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh---------------hcccCCCCeeeeCCHHHHHhhcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR---------------AHREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~---------------~~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
|||+|||+|.+|...+..|++.||+|..+|.+++|++.+.+. +...| ++..+++.++.++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~g--Rl~fTtd~~~a~~~-- 76 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASG--RLRFTTDYEEAVKD-- 76 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccC--cEEEEcCHHHHHhc--
Confidence 689999999999999999999999999999999998776542 11222 58889999998887
Q ss_pred CCcEEEEEcCCCc---------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhc
Q 010637 72 RPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARH 142 (505)
Q Consensus 72 ~advIil~vp~~~---------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~ 142 (505)
+|++|++||++. .++++++.+.+.++...+||.-||+.+.++++..+.+.+....= +..|.-.|+--++
T Consensus 77 -adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLRE 154 (414)
T COG1004 77 -ADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLRE 154 (414)
T ss_pred -CCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcC
Confidence 999999998753 47788899999998889999999999999999888776542110 2233334455555
Q ss_pred C--------C-ccccCCCHH-HHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHh
Q 010637 143 G--------P-SLMPGGSFE-AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV 212 (505)
Q Consensus 143 G--------~-~im~gg~~e-a~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~ 212 (505)
| | .+++|...+ +.+.++++++.+..+ ...++++ ....+.++|+..|++.+.-+.+++|.-.++++.
T Consensus 155 G~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~---~~p~l~t-~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~ 230 (414)
T COG1004 155 GSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQ---DVPILFT-DLREAELIKYAANAFLATKISFINEIANICEKV 230 (414)
T ss_pred cchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhc---CCCEEEe-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 3 577887554 678888888776431 1234444 458899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHH
Q 010637 213 GGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASL 290 (505)
Q Consensus 213 g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av 290 (505)
| +|.+++.+.+. ++. +|....+...-.|++.. +-||.. ..+..|.++|.+.+++.+.+
T Consensus 231 g-~D~~~V~~gIG------lD~---RIG~~fl~aG~GyGGsC----fPKD~~------AL~~~a~~~~~~~~ll~avv 288 (414)
T COG1004 231 G-ADVKQVAEGIG------LDP---RIGNHFLNAGFGYGGSC----FPKDTK------ALIANAEELGYDPNLLEAVV 288 (414)
T ss_pred C-CCHHHHHHHcC------CCc---hhhHhhCCCCCCCCCcC----CcHhHH------HHHHHHHhcCCchHHHHHHH
Confidence 9 99999988862 111 11112222211244432 233332 46678999999988888653
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-17 Score=176.47 Aligned_cols=192 Identities=16% Similarity=0.160 Sum_probs=142.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh-------hcccCCC----------CeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQL----------PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~~----------~i~~~~s~~e~v~ 68 (505)
..+|||||+|.||.+||.+|+++||+|++||++++++++..+. ....|.+ +++.+++++++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~- 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA- 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC-
Confidence 3579999999999999999999999999999999988654211 0111100 467788887654
Q ss_pred hcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHH----HCCCeEEe-CCCCCCHHHhhc
Q 010637 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS----QKGLLYLG-MGVSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~----~~gi~~i~-~pvsGg~~~a~~ 142 (505)
+ +|+||.|||++.+++..+ .++.+.++++.||. ++|+....+ ++.+.+. ..|+||++ +|++.
T Consensus 84 ~---aDlVIEav~E~~~vK~~vf~~l~~~~~~~~Ila-snTStl~i~-~iA~~~~~p~r~~G~HFf~Papv~~------- 151 (503)
T TIGR02279 84 D---AGLVIEAIVENLEVKKALFAQLEELCPADTIIA-SNTSSLSIT-AIAAGLARPERVAGLHFFNPAPVMA------- 151 (503)
T ss_pred C---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE-ECCCCCCHH-HHHHhcCcccceEEEeccCccccCc-------
Confidence 4 999999999999998886 55666666655554 333333333 3444443 34899999 67773
Q ss_pred CCccccCC---CHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHH
Q 010637 143 GPSLMPGG---SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 143 G~~im~gg---~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
-..+++| ++++++.+.++++.++ +.++++|+ ..|. +.|.+. ...++|++.++++.+ +++++
T Consensus 152 -LvEvv~g~~Ts~e~~~~~~~l~~~lg------k~pv~v~d-~pGf----i~Nrl~---~~~~~EA~~l~e~g~-a~~~~ 215 (503)
T TIGR02279 152 -LVEVVSGLATAAEVAEQLYETALAWG------KQPVHCHS-TPGF----IVNRVA---RPYYAEALRALEEQV-AAPAV 215 (503)
T ss_pred -eEEEeCCCCCCHHHHHHHHHHHHHcC------CeeeEeCC-CCCc----HHHHHH---HHHHHHHHHHHHcCC-CCHHH
Confidence 2556777 9999999999999999 88999986 2232 556665 357899999999988 99999
Q ss_pred HHHHHHH
Q 010637 220 LAEIFDE 226 (505)
Q Consensus 220 i~~v~~~ 226 (505)
++++++.
T Consensus 216 ID~al~~ 222 (503)
T TIGR02279 216 LDAALRD 222 (503)
T ss_pred HHHHHHh
Confidence 9999863
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=162.06 Aligned_cols=195 Identities=13% Similarity=0.131 Sum_probs=140.3
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh-----hc---------ccCCCCeeeeCCHHHHHhh
Q 010637 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-----AH---------REGQLPLTGHYTPRDFVLS 69 (505)
Q Consensus 4 ~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-----~~---------~~g~~~i~~~~s~~e~v~~ 69 (505)
+.+++|+|||+|.||.+||..|+++|++|++||+++++++.+.+. +. ..+ ++..+++++++++.
T Consensus 2 ~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~ 79 (311)
T PRK06130 2 NPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMG--RIRMEAGLAAAVSG 79 (311)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhh--ceEEeCCHHHHhcc
Confidence 345689999999999999999999999999999999988776642 10 000 24566778777766
Q ss_pred cCCCcEEEEEcCCCch-HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCHHHhhcCC
Q 010637 70 IQRPRSVIILVKAGSP-VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP 144 (505)
Q Consensus 70 l~~advIil~vp~~~~-v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~~~a~~G~ 144 (505)
+|+||+|||+... ...++.++.+.++++.+|+..+++.+ ..++.+.+... ++||.++|..+. ..
T Consensus 80 ---aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~~~~~ig~h~~~p~~~~~------l~ 148 (311)
T PRK06130 80 ---ADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLP--ITAIAQAVTRPERFVGTHFFTPADVIP------LV 148 (311)
T ss_pred ---CCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCC--HHHHHhhcCCcccEEEEccCCCCccCc------eE
Confidence 9999999999754 45667788777766666654444433 33555555321 445544442211 11
Q ss_pred ccccCC--CHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHH
Q 010637 145 SLMPGG--SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 145 ~im~gg--~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
.+++|. ++++++.++++|+.+| ++++++++...|. +++|. ...+++|++.++++.+ ++++++++
T Consensus 149 ~i~~g~~t~~~~~~~v~~l~~~~G------~~~v~~~~d~~G~---i~nr~----~~~~~~Ea~~l~~~g~-~~~~~id~ 214 (311)
T PRK06130 149 EVVRGDKTSPQTVATTMALLRSIG------KRPVLVKKDIPGF---IANRI----QHALAREAISLLEKGV-ASAEDIDE 214 (311)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcC------CEEEEEcCCCCCc---HHHHH----HHHHHHHHHHHHHcCC-CCHHHHHH
Confidence 344443 7899999999999999 7889998766666 55555 3467899999999988 99999999
Q ss_pred HHH
Q 010637 223 IFD 225 (505)
Q Consensus 223 v~~ 225 (505)
++.
T Consensus 215 ~~~ 217 (311)
T PRK06130 215 VVK 217 (311)
T ss_pred HHH
Confidence 974
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-17 Score=163.43 Aligned_cols=175 Identities=16% Similarity=0.228 Sum_probs=133.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|+|||+|.||.+||..|.++|++|.+||++++..+.+.+.+. +....+..+.+.. +|+||+|+|.. .+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~------~~~~~~~~~~~~~---aDlVilavp~~-~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL------VDEASTDLSLLKD---CDLVILALPIG-LL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC------cccccCCHhHhcC---CCEEEEcCCHH-HH
Confidence 47999999999999999999999999999999998888776542 2222233344554 99999999985 67
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCH-HHhhcCC-cccc----------CCCHH
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGE-EGARHGP-SLMP----------GGSFE 153 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~-~~a~~G~-~im~----------gg~~e 153 (505)
.++++++.+.+.++.+|+|+++......... .+....|++ .|+.|++ .+...+. .++. +++++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~----~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~ 146 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAW----EKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLN 146 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHH----HHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHH
Confidence 7888999999999999999998765443332 223335887 5888876 4444333 2222 35889
Q ss_pred HHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhH
Q 010637 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQL 201 (505)
Q Consensus 154 a~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~ 201 (505)
.++.++++++.+| .+++++++.+....+++++|...+....+
T Consensus 147 ~~~~v~~l~~~lG------~~~v~~~~~~hD~~~a~~shlp~~~a~~l 188 (279)
T PRK07417 147 ALAIVEELAVSLG------SKIYTADPEEHDRAVALISHLPVMVSAAL 188 (279)
T ss_pred HHHHHHHHHHHcC------CEEEEcCHHHHHHHHHHHcchHHHHHHHH
Confidence 9999999999999 78899999999999999988876655433
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=161.28 Aligned_cols=195 Identities=12% Similarity=0.074 Sum_probs=142.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh-------ccc----CC--CCeeeeCCHHHHHhhcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HRE----GQ--LPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-------~~~----g~--~~i~~~~s~~e~v~~l~~ 72 (505)
..+|||||+|.||.+||.+|+.+|++|.+||++++..+.+.+.. ... +. .+++.+++++++++.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~--- 83 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD--- 83 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC---
Confidence 35799999999999999999999999999999998765543210 000 00 046777888888776
Q ss_pred CcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCHHHhhcCCccc
Q 010637 73 PRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGPSLM 147 (505)
Q Consensus 73 advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~~~a~~G~~im 147 (505)
+|+|+.+||+...++..+ .++.+.++++. ||.++|+.. ...++.+.+... |.||+.+|-.-.-. -++
T Consensus 84 aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l-~~s~la~~~~~p~R~~g~HffnP~~~~pLV------EVv 155 (321)
T PRK07066 84 ADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSGL-LPTDFYARATHPERCVVGHPFNPVYLLPLV------EVL 155 (321)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCcc-CHHHHHHhcCCcccEEEEecCCccccCceE------EEe
Confidence 999999999998888777 67878887776 666666643 444555555422 56777654211100 233
Q ss_pred cC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010637 148 PG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 148 ~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~ 225 (505)
+| .++++++.+..+++.+| +.++.+..+-.|+. -|.+.+. ++.|++.++.++. .++++|+.+++
T Consensus 156 ~g~~T~~e~~~~~~~f~~~lG------k~pV~v~kd~pGFi----~NRl~~a---~~~EA~~lv~eGv-as~edID~a~~ 221 (321)
T PRK07066 156 GGERTAPEAVDAAMGIYRALG------MRPLHVRKEVPGFI----ADRLLEA---LWREALHLVNEGV-ATTGEIDDAIR 221 (321)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEeEecCCCCccHH----HHHHHHH---HHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 33 48899999999999999 78888865555654 4666544 5599999999987 99999999974
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-16 Score=158.18 Aligned_cols=190 Identities=13% Similarity=0.189 Sum_probs=140.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
|+|+|||+|.||.+||.+|.++|+ +|++|||++++.+.+.+.+. +..+.+++++. . +|+||+|||+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~------~~~~~~~~~~~-~---aD~Vilavp~~- 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGL------VDEIVSFEELK-K---CDVIFLAIPVD- 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCC------CcccCCHHHHh-c---CCEEEEeCcHH-
Confidence 479999999999999999999996 78999999998887765432 12345676654 3 99999999996
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCC----HHHhh----cCC-ccccC---CC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGG----EEGAR----HGP-SLMPG---GS 151 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg----~~~a~----~G~-~im~g---g~ 151 (505)
.+.+++.++.+ +.++.+|+|++++.....+...+. .+..|+++ |++|+ +..+. .|. .++++ ++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~ 145 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSG 145 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCC
Confidence 67788899999 889999999988765444333222 23568887 99875 44432 455 44553 56
Q ss_pred HHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHH
Q 010637 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223 (505)
Q Consensus 152 ~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v 223 (505)
++.++.++++|+.+| ..++++++.+....++++++.-. ....+++++.. .+ .+.+++.++
T Consensus 146 ~~~~~~v~~l~~~~G------~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~-~~~~~~~~~ 205 (275)
T PRK08507 146 EKHQERAKEIFSGLG------MRIVYMDAKEHDLHAAYISHLPH-IISFALANTVL----KE-EDERNIFDL 205 (275)
T ss_pred HHHHHHHHHHHHHhC------CEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hc-CChHHHHhh
Confidence 788999999999999 78999999999999999988853 44445555541 24 566555444
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=158.97 Aligned_cols=193 Identities=16% Similarity=0.199 Sum_probs=137.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc-------ccCC----------CCeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REGQ----------LPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~----------~~i~~~~s~~e~v~ 68 (505)
.++|+|||+|.||.+||.+|+.+|++|.+||+++++++.+.+... ..|. .+++.++++++ ++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 82 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED-LA 82 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-hc
Confidence 468999999999999999999999999999999998776442100 0000 03566777754 44
Q ss_pred hcCCCcEEEEEcCCCchHHH-HHHHHHhcCCCCcEEE-ecCCCCchhHHHHHHHHHH----CCCeEEe-CCCCCCHHHhh
Q 010637 69 SIQRPRSVIILVKAGSPVDQ-TIAALSEHMSPGDCII-DGGNEWYLNTERRIHEASQ----KGLLYLG-MGVSGGEEGAR 141 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~-vl~~l~~~l~~g~iII-d~st~~~~~t~~~~~~l~~----~gi~~i~-~pvsGg~~~a~ 141 (505)
. +|+||+|||+..+++. ++.++.+.++++.+|+ ++|+..+ + ++++.+.. .|+||++ +|++++.+-
T Consensus 83 ~---aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--s-~la~~~~~~~r~~g~h~~~p~~~~~~vei-- 154 (292)
T PRK07530 83 D---CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI--T-RLASATDRPERFIGIHFMNPVPVMKLVEL-- 154 (292)
T ss_pred C---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH--H-HHHhhcCCcccEEEeeccCCcccCceEEE--
Confidence 4 9999999999866654 4578888898999888 4444332 2 45554431 2788888 455543321
Q ss_pred cCCccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHH
Q 010637 142 HGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELA 221 (505)
Q Consensus 142 ~G~~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~ 221 (505)
....+++++.++.+.++|+.+| +.++++++.+ |. ++ |.+ ...++.|++.++.++- .++++++
T Consensus 155 ---~~g~~t~~~~~~~~~~~~~~~g------k~~v~~~d~p-g~---i~-nRl---~~~~~~ea~~~~~~g~-~~~~~iD 216 (292)
T PRK07530 155 ---IRGIATDEATFEAAKEFVTKLG------KTITVAEDFP-AF---IV-NRI---LLPMINEAIYTLYEGV-GSVEAID 216 (292)
T ss_pred ---eCCCCCCHHHHHHHHHHHHHcC------CeEEEecCcC-Ch---HH-HHH---HHHHHHHHHHHHHhCC-CCHHHHH
Confidence 1224689999999999999999 7888887633 33 33 333 3455699999999866 6899999
Q ss_pred HHHH
Q 010637 222 EIFD 225 (505)
Q Consensus 222 ~v~~ 225 (505)
.++.
T Consensus 217 ~~~~ 220 (292)
T PRK07530 217 TAMK 220 (292)
T ss_pred HHHH
Confidence 9863
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-16 Score=159.78 Aligned_cols=190 Identities=12% Similarity=0.184 Sum_probs=136.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHH-----------HHhhc--------ccCCCCeeeeCCHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDET-----------LDRAH--------REGQLPLTGHYTPRDF 66 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l-----------~~~~~--------~~g~~~i~~~~s~~e~ 66 (505)
+++|||||+|.||.+||.+|+.+|++|.+||+++++++.. .+.+. ..+ .+...++. +.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~-~~ 80 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLG--RIRCTTNL-EE 80 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh--ceEeeCCH-HH
Confidence 4689999999999999999999999999999999887542 22110 000 23444455 44
Q ss_pred HhhcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEE-ecCCCCchhHHHHHHHHH----HCCCeEEeCCCCCCHHHh
Q 010637 67 VLSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCII-DGGNEWYLNTERRIHEAS----QKGLLYLGMGVSGGEEGA 140 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iII-d~st~~~~~t~~~~~~l~----~~gi~~i~~pvsGg~~~a 140 (505)
++. +|+||+|||++.+++..+ .++.+.++++.+|+ ++|+..+.. +.+.+. -.|+||+++|..+..
T Consensus 81 ~~~---aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~---l~~~~~~~~r~~g~h~~~pp~~~~l--- 151 (295)
T PLN02545 81 LRD---ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITR---LASATQRPQQVIGMHFMNPPPIMKL--- 151 (295)
T ss_pred hCC---CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCCcceEEEeccCCcccCce---
Confidence 555 999999999888877665 67888888888887 566664433 333332 237888888875422
Q ss_pred hcCCcccc--CCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHH
Q 010637 141 RHGPSLMP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (505)
Q Consensus 141 ~~G~~im~--gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~ 218 (505)
..++. ++++++++.++++|+.+| ++++++++ ..|. +.|.+.. .+++|++.++.+.. .+++
T Consensus 152 ---veiv~g~~t~~e~~~~~~~ll~~lG------~~~~~~~d-~~g~----i~nri~~---~~~~ea~~~~~~gv-~~~~ 213 (295)
T PLN02545 152 ---VEIIRGADTSDEVFDATKALAERFG------KTVVCSQD-YPGF----IVNRILM---PMINEAFYALYTGV-ASKE 213 (295)
T ss_pred ---EEEeCCCCCCHHHHHHHHHHHHHcC------CeeEEecC-cccH----HHHHHHH---HHHHHHHHHHHcCC-CCHH
Confidence 12333 468999999999999999 78888876 3343 4555544 45699999999987 8999
Q ss_pred HHHHHHH
Q 010637 219 ELAEIFD 225 (505)
Q Consensus 219 ~i~~v~~ 225 (505)
+++.++.
T Consensus 214 ~iD~~~~ 220 (295)
T PLN02545 214 DIDTGMK 220 (295)
T ss_pred HHHHHHH
Confidence 9998863
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.4e-16 Score=154.87 Aligned_cols=193 Identities=15% Similarity=0.186 Sum_probs=139.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh----------cccCC----------CCeeeeCCHHHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA----------HREGQ----------LPLTGHYTPRDF 66 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~----------~~~g~----------~~i~~~~s~~e~ 66 (505)
.+|+|||+|.||.+||..|+.+|++|++||++++.++...+.. ...|. .++...++. +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 5799999999999999999999999999999999876533210 00000 023444555 34
Q ss_pred HhhcCCCcEEEEEcCCCchHH-HHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEe-CCCCCCHHHh
Q 010637 67 VLSIQRPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLG-MGVSGGEEGA 140 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~-~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~-~pvsGg~~~a 140 (505)
++. +|+||+++|+...++ .++.++.+.++++.+|+..+++. ...++++.+... |+||+. ++++++.+ +
T Consensus 83 ~~~---aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE-v 156 (291)
T PRK06035 83 LSD---ADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIE-V 156 (291)
T ss_pred hCC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEE-E
Confidence 444 999999999976544 45578888888888887665554 344555555432 788888 56776654 2
Q ss_pred hcCCccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHH
Q 010637 141 RHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 141 ~~G~~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
..|+ ..++++++.+.++++.+| +.++++++.+.....|+++| +++|++.+++++. .++++|
T Consensus 157 ~~g~----~T~~e~~~~~~~~~~~lg------k~~v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~-a~~~~i 217 (291)
T PRK06035 157 VRAA----LTSEETFNTTVELSKKIG------KIPIEVADVPGFFTTRFIEG--------WLLEAIRSFEIGI-ATIKDI 217 (291)
T ss_pred eCCC----CCCHHHHHHHHHHHHHcC------CeEEEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCC-CCHHHH
Confidence 3443 138999999999999999 88999987555555555543 4589999998866 799999
Q ss_pred HHHHH
Q 010637 221 AEIFD 225 (505)
Q Consensus 221 ~~v~~ 225 (505)
+.++.
T Consensus 218 D~~~~ 222 (291)
T PRK06035 218 DEMCK 222 (291)
T ss_pred HHHHh
Confidence 99874
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-15 Score=150.20 Aligned_cols=197 Identities=13% Similarity=0.220 Sum_probs=139.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh-------cccCC-----------CCeeeeCCHHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQ-----------LPLTGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~-----------~~i~~~~s~~e~v 67 (505)
+++|+|||+|.||.++|..|+.+|++|++||++++.+++..+.. ...+. .+++.++++++++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 35899999999999999999999999999999998776654320 00000 0466788888877
Q ss_pred hhcCCCcEEEEEcCCCchH-HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC--
Q 010637 68 LSIQRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-- 144 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v-~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-- 144 (505)
+. +|+||+|+|+..++ ..++.++.+.++++.+|++.+++.+. .++.+.+. +.-+|+++..+..+ ...+
T Consensus 83 ~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~--~~~~~~~~-~~~r~vg~Hf~~p~---~~~~lv 153 (287)
T PRK08293 83 KD---ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLP--SQFAEATG-RPEKFLALHFANEI---WKNNTA 153 (287)
T ss_pred cC---CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCH--HHHHhhcC-CcccEEEEcCCCCC---CcCCeE
Confidence 76 99999999987544 55568888888888888665555433 23333332 22345554332221 1223
Q ss_pred ccc--cCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHH
Q 010637 145 SLM--PGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 145 ~im--~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
-++ .+.++++++.+.++++.+| +.++.+.++..|..+ |.+ ...+++|++.+++++. .++++|+.
T Consensus 154 evv~~~~t~~~~~~~~~~~~~~~G------k~pv~v~~d~pgfi~----nRi---~~~~~~ea~~l~~~g~-a~~~~iD~ 219 (287)
T PRK08293 154 EIMGHPGTDPEVFDTVVAFAKAIG------MVPIVLKKEQPGYIL----NSL---LVPFLSAALALWAKGV-ADPETIDK 219 (287)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcC------CeEEEecCCCCCHhH----HHH---HHHHHHHHHHHHHcCC-CCHHHHHH
Confidence 334 3578999999999999999 778888766666655 444 4456699999999877 89999999
Q ss_pred HHH
Q 010637 223 IFD 225 (505)
Q Consensus 223 v~~ 225 (505)
++.
T Consensus 220 a~~ 222 (287)
T PRK08293 220 TWM 222 (287)
T ss_pred HHH
Confidence 863
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.2e-15 Score=151.71 Aligned_cols=290 Identities=14% Similarity=0.105 Sum_probs=187.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccC----CC----CeeeeCCHHHHHhhcCCCcEE
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG----QL----PLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g----~~----~i~~~~s~~e~v~~l~~advI 76 (505)
.+|||+|||+|.||..+|..|+++| +|.+|.|+++..+.+.+.+.+.. +. ++...+++++.++. +|+|
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~---aDlV 81 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC---ADVV 81 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc---CCEE
Confidence 3579999999999999999999999 68999999999888876532110 00 34566777777666 9999
Q ss_pred EEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHH-HHHHHH----CCCeEEeCCCCCCHHHhhcCC--cc-cc
Q 010637 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR-IHEASQ----KGLLYLGMGVSGGEEGARHGP--SL-MP 148 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~-~~~l~~----~gi~~i~~pvsGg~~~a~~G~--~i-m~ 148 (505)
|++||+. .++++++++.+.+.++.++|.++++....+..+ .+.+.+ ..+..+..|-.- .+. ..|. .+ +.
T Consensus 82 ilavps~-~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a-~ev-~~g~~t~~via 158 (341)
T PRK12439 82 VMGVPSH-GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIA-REV-AEGYAAAAVLA 158 (341)
T ss_pred EEEeCHH-HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHH-HHH-HcCCCeEEEEE
Confidence 9999984 799999999999988888999998876542222 122222 112223333111 111 2243 23 33
Q ss_pred CCCHHHHHHHHHHHHHHhccc---CCC---------CceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCC
Q 010637 149 GGSFEAYNNIRDILQKVAAQV---DDG---------PCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLS 216 (505)
Q Consensus 149 gg~~ea~~~v~~ll~~iga~~---~~~---------~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~ 216 (505)
+.+++..+.++.+|+.-+-+. ++- ++++.++ .|...-+.+..|.....+...+.|+..+++..| .+
T Consensus 159 ~~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia-~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G-~~ 236 (341)
T PRK12439 159 MPDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIA-VGMGYSLGIGENTRAMVIARALREMTKLGVAMG-GN 236 (341)
T ss_pred eCCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHH-HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 446677788888886544211 000 3333332 233334455667776778899999999999998 78
Q ss_pred HHHHHHHHHHhccCCcchhHHhhhhhhccccc----cCCCchhHHHHHhhhCCCchHHHHH----HHHHHcCCCcchHHH
Q 010637 217 NAELAEIFDEWNKGELESFLVEITADIFKVKD----EYGEGELVDKILDKTGMKGTGKWTV----QQAAELSVAAPTIAA 288 (505)
Q Consensus 217 ~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~----~~~~~~~l~~i~~~~~~kgtg~~~~----~~A~~~gvp~p~i~~ 288 (505)
++.+... .|.++-.+ .......++. .+..+..++.+.+.+++.-+|..++ +.++++++.+|++.+
T Consensus 237 ~~t~~gl-----~G~GDl~~--Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~ 309 (341)
T PRK12439 237 PETFAGL-----AGMGDLIV--TCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIARE 309 (341)
T ss_pred ccccccc-----chhhhhhh--hccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHH
Confidence 7776543 22222111 1111111111 1223456777777788888886665 568899999999985
Q ss_pred HHHHHHHhcchHHHHHHHHHhccC
Q 010637 289 SLDCRYLSGLKEEREKAAKVLKEA 312 (505)
Q Consensus 289 av~~r~~s~~~~~r~~~~~~~~~~ 312 (505)
..+.+...++.+..++.++..+
T Consensus 310 --~~~il~~~~~~~~~~~~l~~~~ 331 (341)
T PRK12439 310 --VDAVINHGSTVEQAYRGLIAEV 331 (341)
T ss_pred --HHHHHhCCCCHHHHHHHHhcCC
Confidence 3677777788888888887543
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-14 Score=143.54 Aligned_cols=196 Identities=17% Similarity=0.161 Sum_probs=136.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|+|||+|.||..|+..|.++|+ +|.+|+|++++.+.+.+... ++....++.+++.. +|+||+++|+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~-----g~~~~~~~~~~~~~---aDiVilav~p 72 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP-----GIHVAKTIEEVISQ---SDLIFICVKP 72 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC-----CeEEECCHHHHHHh---CCEEEEecCH
Confidence 479999999999999999999994 79999999998877765321 25667888888776 9999999987
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccC--CCHHHHHHHH
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPG--GSFEAYNNIR 159 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~g--g~~ea~~~v~ 159 (505)
. .+.++++++.+.+.++++||+++++. ....+...+..+.++++.. .+..+..|. .++.| .+++.++.++
T Consensus 73 ~-~~~~vl~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~ 145 (273)
T PRK07680 73 L-DIYPLLQKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLE 145 (273)
T ss_pred H-HHHHHHHHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHH
Confidence 4 78999999999998899999999875 3445555544333444432 334556777 44555 4667889999
Q ss_pred HHHHHHhcccCCCCceEEeCCCcchhhhhhHh--hhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 010637 160 DILQKVAAQVDDGPCVTYIGEGGSGNFVKMVH--NGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEW 227 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~--N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~ 227 (505)
++|+.+| .++++.+.-.-...-+.+ -++.+..+..+.++. .++.| ++.++..+++.+.
T Consensus 146 ~ll~~~G-------~~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~G-l~~~~a~~~~~~~ 205 (273)
T PRK07680 146 RLFSNIS-------TPLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETN-ISKEEATTLASEM 205 (273)
T ss_pred HHHHcCC-------CEEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcC-CCHHHHHHHHHHH
Confidence 9999999 345554421000011111 123344444444442 24467 9999998887543
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-15 Score=150.19 Aligned_cols=193 Identities=18% Similarity=0.233 Sum_probs=136.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHH-----------HHHhhcccC------CCCeeeeCCHHHHHhh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDE-----------TLDRAHREG------QLPLTGHYTPRDFVLS 69 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~-----------l~~~~~~~g------~~~i~~~~s~~e~v~~ 69 (505)
++|+|||+|.||.++|..|+.+|++|.+||+++++++. +.+.+.... ..++..+++.++ ++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hcc
Confidence 57999999999999999999999999999999998753 222221000 003555667654 444
Q ss_pred cCCCcEEEEEcCCCchHH-HHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH----CCCeEEe-CCCCCCHHHhhcC
Q 010637 70 IQRPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLG-MGVSGGEEGARHG 143 (505)
Q Consensus 70 l~~advIil~vp~~~~v~-~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~-~pvsGg~~~a~~G 143 (505)
+|+||+|+|+...++ +++.++.+.++++.+|+..+++.+. ..+.+.+.. .++||.. +++..+.+ ...|
T Consensus 83 ---aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~--~~la~~~~~~~r~ig~h~~~P~~~~~~ve-v~~g 156 (282)
T PRK05808 83 ---ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSI--TELAAATKRPDKVIGMHFFNPVPVMKLVE-IIRG 156 (282)
T ss_pred ---CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHHhhCCCcceEEeeccCCcccCccEE-EeCC
Confidence 999999999876665 6778899989888888554444332 255555532 2556666 34444433 1111
Q ss_pred CccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHH
Q 010637 144 PSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223 (505)
Q Consensus 144 ~~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v 223 (505)
.+++++.++.+.++|+.+| +.++++++ ..|. +.|.+. ..+++|+..+++++. .++++++.+
T Consensus 157 ----~~t~~e~~~~~~~l~~~lG------k~pv~~~d-~~g~----i~~Ri~---~~~~~ea~~~~~~gv-~~~~diD~~ 217 (282)
T PRK05808 157 ----LATSDATHEAVEALAKKIG------KTPVEVKN-APGF----VVNRIL---IPMINEAIFVLAEGV-ATAEDIDEG 217 (282)
T ss_pred ----CCCCHHHHHHHHHHHHHcC------CeeEEecC-ccCh----HHHHHH---HHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 4568999999999999999 88999864 5554 445554 455599999999877 889999998
Q ss_pred HH
Q 010637 224 FD 225 (505)
Q Consensus 224 ~~ 225 (505)
+.
T Consensus 218 ~~ 219 (282)
T PRK05808 218 MK 219 (282)
T ss_pred HH
Confidence 73
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=157.17 Aligned_cols=288 Identities=9% Similarity=-0.020 Sum_probs=189.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-------CcEEEEeCChH-----HHHHHHHhhcccCCC-------CeeeeCCHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-------FPISVYNRTTS-----KVDETLDRAHREGQL-------PLTGHYTPRDF 66 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-------~~V~v~dr~~~-----~~~~l~~~~~~~g~~-------~i~~~~s~~e~ 66 (505)
.++|+|||.|.||++||..|+++| |+|.+|.|+++ .++.+.+.+.+..++ ++..+++++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 368999999999999999999998 89999999986 356665543321111 56778888888
Q ss_pred HhhcCCCcEEEEEcCCCchHHHHHHHHHh--cCCCCcEEEecCCCCchhHH---HHHHHHHH---CCCeEEeCCCCCCHH
Q 010637 67 VLSIQRPRSVIILVKAGSPVDQTIAALSE--HMSPGDCIIDGGNEWYLNTE---RRIHEASQ---KGLLYLGMGVSGGEE 138 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~--~l~~g~iIId~st~~~~~t~---~~~~~l~~---~gi~~i~~pvsGg~~ 138 (505)
++. +|+||++||+ ..++++++++.+ .+.++.+||.++.+...++. ...+.+++ ..+.++..|-. ..+
T Consensus 91 v~~---aDiIvlAVPs-q~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~-A~E 165 (365)
T PTZ00345 91 VED---ADLLIFVIPH-QFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANV-AND 165 (365)
T ss_pred Hhc---CCEEEEEcCh-HHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCH-HHH
Confidence 887 9999999999 589999999998 78777789988877654432 22333332 22333333322 234
Q ss_pred HhhcCC--ccccCCCHHHHHHHHHHHHHHhcc-----------cCC-CCceEEeCCCcchhhhhhHhhhHHHhHhhHHHH
Q 010637 139 GARHGP--SLMPGGSFEAYNNIRDILQKVAAQ-----------VDD-GPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISE 204 (505)
Q Consensus 139 ~a~~G~--~im~gg~~ea~~~v~~ll~~iga~-----------~~~-~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~E 204 (505)
-++.-| ..+++-+.+..+.++.+|..=--+ +.+ -|+++-++. |....+++-.|.-.+.+...++|
T Consensus 166 va~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~-Gi~dGl~~G~N~kaalitrgl~E 244 (365)
T PTZ00345 166 VAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAA-GFCDGLGLGTNTKSAIIRIGLEE 244 (365)
T ss_pred HHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCChhHHHHHHHHHHHH
Confidence 444555 445566888888888888532111 100 044444432 44445567789999999999999
Q ss_pred HHHHHHHhCC-CCHHHHHHHHHHhccCCcchhHHhhhhhhccccccC----C---CchhHHHHHhhh--CCCchHHHHH-
Q 010637 205 AYDVLKHVGG-LSNAELAEIFDEWNKGELESFLVEITADIFKVKDEY----G---EGELVDKILDKT--GMKGTGKWTV- 273 (505)
Q Consensus 205 a~~l~~~~g~-l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~----~---~~~~l~~i~~~~--~~kgtg~~~~- 273 (505)
+..+++..|+ .+++.+... .|.++-.+ +... .++..| . ++..++.+.+.+ +|+-+|..++
T Consensus 245 m~~l~~a~g~~~~~~T~~gl-----aG~GDLi~--Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~ 315 (365)
T PTZ00345 245 MKLFGKIFFPNVMDETFFES-----CGLADLIT--TCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLK 315 (365)
T ss_pred HHHHHHHhCCCCCccchhcc-----chHhHhhh--cccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHH
Confidence 9999999972 477766543 22222111 1111 111111 1 113566777766 7888887777
Q ss_pred ---HHHHHcCC--CcchHHHHHHHHHHhcchHHHHHHHHHhc
Q 010637 274 ---QQAAELSV--AAPTIAASLDCRYLSGLKEEREKAAKVLK 310 (505)
Q Consensus 274 ---~~A~~~gv--p~p~i~~av~~r~~s~~~~~r~~~~~~~~ 310 (505)
+.++++++ ++|++.+ + .|.+...++....+..++.
T Consensus 316 ~v~~l~~~~~i~~~~Pi~~~-v-y~il~~~~~~~~~~~~l~~ 355 (365)
T PTZ00345 316 EVYEVLESHDLKKEFPLFTV-T-YKIAFEGADPSSLIDVLST 355 (365)
T ss_pred HHHHHHHHcCCCCCCCHHHH-H-HHHHhCCCCHHHHHHHHHc
Confidence 67889999 8999985 3 5666666666777766664
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-15 Score=156.37 Aligned_cols=179 Identities=15% Similarity=0.169 Sum_probs=141.1
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 5 ALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 5 ~~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.+++|+||| +|.||.+||+.|.++||+|.+|||++. .++++++.. +|+||+|+|..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--------------------~~~~~~~~~---aDlVilavP~~ 153 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--------------------DRAEDILAD---AGMVIVSVPIH 153 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc--------------------hhHHHHHhc---CCEEEEeCcHH
Confidence 346899998 999999999999999999999998631 144556655 99999999997
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCHHHhhcCC-ccccCC-CHHHHHHHHH
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPGG-SFEAYNNIRD 160 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~~~a~~G~-~im~gg-~~ea~~~v~~ 160 (505)
....++.++.+ +++|.+|+|+|++.......+.+.+. ..|++ .|++|.+.....|. .+++++ ++++++.+.+
T Consensus 154 -~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~ 228 (374)
T PRK11199 154 -LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLE 228 (374)
T ss_pred -HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHH
Confidence 57788888988 89999999999987665555544332 25884 68998876666666 555555 6788999999
Q ss_pred HHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHH
Q 010637 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
+++.+| ..++++++.+....+++++ .+ ..+..++++..+++ .+ .+.+++.+
T Consensus 229 l~~~lG------~~v~~~~~~~HD~~~a~vs-hL--pH~~a~al~~~l~~-~~-~~~~~~~~ 279 (374)
T PRK11199 229 QIQVWG------ARLHRISAVEHDQNMAFIQ-AL--RHFATFAYGLHLAK-EN-VDLEQLLA 279 (374)
T ss_pred HHHHCC------CEEEECCHHHHHHHHHHHH-HH--HHHHHHHHHHHHHH-cC-CCHHHHHH
Confidence 999999 7899999999999999997 43 56666777777766 55 77776544
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=154.46 Aligned_cols=194 Identities=19% Similarity=0.196 Sum_probs=143.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+|+||| +|.||.++|..|.++|++|.+|+|++++..++.... ++..+.++.+.+.. +|+||+|+|.. .
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~------gv~~~~~~~e~~~~---aDvVIlavp~~-~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL------GVEYANDNIDAAKD---ADIVIISVPIN-V 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc------CCeeccCHHHHhcc---CCEEEEecCHH-H
Confidence 5899997 899999999999999999999999988765555432 34566777777776 99999999995 6
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHHHhhcCC-ccccC---CCHHHHHHHHH
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGP-SLMPG---GSFEAYNNIRD 160 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~~a~~G~-~im~g---g~~ea~~~v~~ 160 (505)
+.+++.++.+.+.++.+|+|++++.......+.+.++ .+..|+++ |++|.......|. .+++. .+++.++.+++
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ 149 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKN 149 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHH
Confidence 7889999999999999999999987766666665543 47889987 8887655556676 44443 36788999999
Q ss_pred HHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHH
Q 010637 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
+|+.+| ..++++++......+ .+......+..++.+..+ .+.| ++.++...
T Consensus 150 ll~~~G------~~v~~~~~e~HD~~~---a~vs~lph~~a~al~~~l-~~~g-~~~~~~~~ 200 (437)
T PRK08655 150 FLEKEG------ARVIVTSPEEHDRIM---SVVQGLTHFAYISIASTL-KRLG-VDIKESRK 200 (437)
T ss_pred HHHHcC------CEEEECCHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHh
Confidence 999999 678888775443333 222222333334444443 4556 88776543
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=154.04 Aligned_cols=278 Identities=11% Similarity=0.013 Sum_probs=178.0
Q ss_pred cEEEEcccHHHHHHHHHHHhCC--------CcEEEEeC-----ChHHHHHHHHhhcccCCC-------CeeeeCCHHHHH
Q 010637 8 RIGLAGLAVMGQNLALNVAEKG--------FPISVYNR-----TTSKVDETLDRAHREGQL-------PLTGHYTPRDFV 67 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G--------~~V~v~dr-----~~~~~~~l~~~~~~~g~~-------~i~~~~s~~e~v 67 (505)
||+|||.|.||++||..|+++| |+|.+|.| +++-.+.+.+...+..++ +++.++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999999 555555554432211001 466778899888
Q ss_pred hhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchh--HHH-HHHHHHH---CCCeEEeCCCCCCHHHhh
Q 010637 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN--TER-RIHEASQ---KGLLYLGMGVSGGEEGAR 141 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~--t~~-~~~~l~~---~gi~~i~~pvsGg~~~a~ 141 (505)
+. +|+||++||+ ..++.+++++.+++.++.++|.++.+.... +.. ..+.+++ ..+.++..|-.. .+-++
T Consensus 81 ~~---ADiIIlAVPs-~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A-~Eva~ 155 (342)
T TIGR03376 81 KG---ADILVFVIPH-QFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLA-NEVAK 155 (342)
T ss_pred hc---CCEEEEECCh-HHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchH-HHHHc
Confidence 87 9999999999 589999999999998889999998887655 433 2233332 222233333332 34444
Q ss_pred cCC-c-cccCCC----HHHHHHHHHHHHHHhcc-----------cCC-CCceEEeCCCcchhhhhhHhhhHHHhHhhHHH
Q 010637 142 HGP-S-LMPGGS----FEAYNNIRDILQKVAAQ-----------VDD-GPCVTYIGEGGSGNFVKMVHNGIEYGDMQLIS 203 (505)
Q Consensus 142 ~G~-~-im~gg~----~ea~~~v~~ll~~iga~-----------~~~-~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~ 203 (505)
.-| . .+.+.+ .+..+.++.+|+.=--+ +.+ -|+++-++. |....+.+-.|.-.+.+.+.+.
T Consensus 156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~-Gi~~Gl~~g~N~~aalitrgl~ 234 (342)
T TIGR03376 156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAA-GFVDGLGWGDNAKAAVMRRGLL 234 (342)
T ss_pred CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHH
Confidence 555 3 344456 68888888888531111 000 044444432 4444456678999999999999
Q ss_pred HHHHHHHHhCCCCHH--HHHHHHHHhccCCcchhHHhhhhhhcccccc----CCC-chhHHHHHhh--hCCCchHHHHHH
Q 010637 204 EAYDVLKHVGGLSNA--ELAEIFDEWNKGELESFLVEITADIFKVKDE----YGE-GELVDKILDK--TGMKGTGKWTVQ 274 (505)
Q Consensus 204 Ea~~l~~~~g~l~~~--~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~----~~~-~~~l~~i~~~--~~~kgtg~~~~~ 274 (505)
|+..+++..| -+++ .+... .|.++-.+ .... .++.. +.. +..++.+.+. .+++-+|..++.
T Consensus 235 Em~~l~~~~g-~~~~~~T~~gl-----~G~GDL~~--Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~ 304 (342)
T TIGR03376 235 EMIKFARMFF-PTGEVTFTFES-----CGVADLIT--TCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAK 304 (342)
T ss_pred HHHHHHHHhC-CCCCCCccccc-----chhhhhhh--eeec--CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHH
Confidence 9999999998 5555 44322 12222111 0000 11111 122 4567777777 778888877765
Q ss_pred ----HHHHcCCC--cchHHHHHHHHHHhcchHHHH
Q 010637 275 ----QAAELSVA--APTIAASLDCRYLSGLKEERE 303 (505)
Q Consensus 275 ----~A~~~gvp--~p~i~~av~~r~~s~~~~~r~ 303 (505)
.++++++. +|++.+ + .+.+...++.+.
T Consensus 305 ~~~~l~~~~~i~~~~Pi~~~-v-y~il~~~~~~~~ 337 (342)
T TIGR03376 305 EVHELLKNKNKDDEFPLFEA-V-YQILYEGLPPKK 337 (342)
T ss_pred HHHHHHHHcCCCcCCCHHHH-H-HHHHhCCCCHHH
Confidence 48889999 999985 3 444444444433
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-16 Score=166.44 Aligned_cols=117 Identities=18% Similarity=0.305 Sum_probs=100.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH---HHHhcCCCceecccHHHHHHHHhcCCCCC-CCc
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGEL---ARIWKGGCIIRAVFLDRIKKAYQRNPNLA-SLV 401 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i---~~iW~~Gciirs~lL~~i~~~~~~~~~~~-~ll 401 (505)
+++||+||+||+|+|+.|++++|+|.|+++.. + +|..++ ++.|+.| .++|+++++..++|+++++.. ..+
T Consensus 176 GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~---g--l~~~~l~~v~~~w~~g-~~~S~l~ei~~~~~~~~d~~~~~~~ 249 (470)
T PTZ00142 176 SSGHYVKMVHNGIEYGDMQLISESYKLMKHIL---G--MSNEELSEVFNKWNEG-ILNSYLIEITAKILAKKDDLGEEHL 249 (470)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---C--CCHHHHHHHHHHHcCC-CccCHHHHHHHHHhhcccccCCCcc
Confidence 58999999999999999999999999998432 2 665555 5669999 589999999999999875433 578
Q ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010637 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~~ 450 (505)
+|.+.+...+++++ ||+|++|+++|||+|+|++||+ ++++++..|..
T Consensus 250 l~~i~d~~~~~gtg--~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~ 298 (470)
T PTZ00142 250 VDKILDIAGSKGTG--KWTVQEALERGIPVPTMAASVDARNISALKEERTK 298 (470)
T ss_pred hhhhcCcccCCchH--HhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHH
Confidence 89999999999999 9999999999999999999999 67777776654
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.8e-14 Score=137.40 Aligned_cols=238 Identities=11% Similarity=0.080 Sum_probs=152.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc---EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFP---ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~---V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|+|||||+|.||.+|++.|.+.|+. |.+|+|++++.+++.+... ++..+.++.++++. +|+||+++|+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~-----~~~~~~~~~~~~~~---aDvVilav~p- 71 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP-----KVRIAKDNQAVVDR---SDVVFLAVRP- 71 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC-----CceEeCCHHHHHHh---CCEEEEEeCH-
Confidence 4799999999999999999999865 5799999999888876531 24567889888877 9999999996
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHH
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQ 163 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~ 163 (505)
..+.+++.++ . +.++++||++..+. ....+.+.+......+..+|..... ...|.+.+++++ +.++++|+
T Consensus 72 ~~~~~vl~~l-~-~~~~~~vis~~ag~--~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~t~~~~~~----~~~~~l~~ 141 (258)
T PRK06476 72 QIAEEVLRAL-R-FRPGQTVISVIAAT--DRAALLEWIGHDVKLVRAIPLPFVA--ERKGVTAIYPPD----PFVAALFD 141 (258)
T ss_pred HHHHHHHHHh-c-cCCCCEEEEECCCC--CHHHHHHHhCCCCCEEEECCCChhh--hCCCCeEecCCH----HHHHHHHH
Confidence 5788888776 2 56789999977654 4445555554433456677863222 234555555553 47899999
Q ss_pred HHhcccCCCCceEEeCCC-cchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhh
Q 010637 164 KVAAQVDDGPCVTYIGEG-GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (505)
Q Consensus 164 ~iga~~~~~~~v~~vG~~-G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~ 242 (505)
.+| .++. +++. ..-.+.=+. +.....+.++.++..++.+.| +++++..+++.+.-.|. ..
T Consensus 142 ~lG------~~~~-~~~e~~~d~~~a~~--s~~a~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~~~~G~---------~~ 202 (258)
T PRK06476 142 ALG------TAVE-CDSEEEYDLLAAAS--ALMATYFGILETATGWLEEQG-LKRQKARAYLAPLFASL---------AQ 202 (258)
T ss_pred hcC------CcEE-ECChHhccceeehh--ccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH---------HH
Confidence 999 3333 4432 000000000 122223346788888999998 99999998875433322 22
Q ss_pred h-ccccccCCCchhHHHHHh-hhCCCchHHHHHHHHHHcCCCcchHH
Q 010637 243 I-FKVKDEYGEGELVDKILD-KTGMKGTGKWTVQQAAELSVAAPTIA 287 (505)
Q Consensus 243 i-l~~~~~~~~~~~l~~i~~-~~~~kgtg~~~~~~A~~~gvp~p~i~ 287 (505)
. +.. .+.++ +.+.| ...--||..-.+..-.+.|+.-.++.
T Consensus 203 l~~~~-~~~~~----~~l~~~v~spgGtT~~gl~~le~~~~~~~~~~ 244 (258)
T PRK06476 203 DAVRS-TKTDF----SALSREFSTKGGLNEQVLNDFSRQGGYAALTD 244 (258)
T ss_pred HHHhc-CCCCH----HHHHHhCCCCCchHHHHHHHHHHCChHHHHHH
Confidence 2 222 21222 23333 33344566555555566777644433
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-13 Score=136.44 Aligned_cols=243 Identities=14% Similarity=0.134 Sum_probs=153.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC---CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKG---FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G---~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|||+|+|||+|.||..++..|.++| ++|.+|+|++++.+.+.+.. ++....+..++++. +|+||+++|
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~------g~~~~~~~~~~~~~---advVil~v~ 71 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY------GVRAATDNQEAAQE---ADVVVLAVK 71 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc------CCeecCChHHHHhc---CCEEEEEcC
Confidence 3678999999999999999999999 78999999999888776642 24566788887766 999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHHHhhcCC-ccccCC--CHHHHHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGP-SLMPGG--SFEAYNN 157 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~~a~~G~-~im~gg--~~ea~~~ 157 (505)
+. .++++++.+.+.+ +++||+++++.+.. .+.+.+. .+.+++.+ | ..+.....|. .+.++. ++++++.
T Consensus 72 ~~-~~~~v~~~l~~~~--~~~vvs~~~gi~~~--~l~~~~~-~~~~iv~~~P--~~p~~~~~~~~~i~~~~~~~~~~~~~ 143 (267)
T PRK11880 72 PQ-VMEEVLSELKGQL--DKLVVSIAAGVTLA--RLERLLG-ADLPVVRAMP--NTPALVGAGMTALTANALVSAEDREL 143 (267)
T ss_pred HH-HHHHHHHHHHhhc--CCEEEEecCCCCHH--HHHHhcC-CCCcEEEecC--CchHHHcCceEEEecCCCCCHHHHHH
Confidence 85 7999999998877 57888888877543 3333332 34455543 3 2233334444 445554 8899999
Q ss_pred HHHHHHHHhcccCCCCceEEeCCCcchhhhh-hHhhhHHHhHhhHHHHHHHH-HHHhCCCCHHHHHHHHHHhccCCcchh
Q 010637 158 IRDILQKVAAQVDDGPCVTYIGEGGSGNFVK-MVHNGIEYGDMQLISEAYDV-LKHVGGLSNAELAEIFDEWNKGELESF 235 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK-~v~N~i~~~~~~~i~Ea~~l-~~~~g~l~~~~i~~v~~~~~~g~~~s~ 235 (505)
++.+|+.+| . ++++.++..=+.+- +..++-. .+..+.|++.- +.+.| +++++..+++.++-.|..
T Consensus 144 v~~l~~~lG------~-~~~~~~e~~~d~~~a~~~~~pa--~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~~~~g~~--- 210 (267)
T PRK11880 144 VENLLSAFG------K-VVWVDDEKQMDAVTAVSGSGPA--YVFLFIEALADAGVKLG-LPREQARKLAAQTVLGAA--- 210 (267)
T ss_pred HHHHHHhCC------e-EEEECChHhcchHHHHhcChHH--HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHH---
Confidence 999999999 4 55665322112211 2222111 12222333333 45567 999999888765433332
Q ss_pred HHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHH
Q 010637 236 LVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIA 287 (505)
Q Consensus 236 l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~ 287 (505)
..+.+.+ .++. +.+.+..-.-||..-.+....+.|++-.++.
T Consensus 211 ------~~~~~~~-~~~~---~l~~~v~tpgG~t~~gl~~l~~~g~~~~~~~ 252 (267)
T PRK11880 211 ------KLLLESG-EHPA---ELRDNVTSPGGTTIAALRVLEEKGLRAAVIE 252 (267)
T ss_pred ------HHHHhcC-CCHH---HHHHhCCCCcHHHHHHHHHHHHCCHHHHHHH
Confidence 2222211 1221 2223333344555556666777888755554
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=147.33 Aligned_cols=174 Identities=17% Similarity=0.225 Sum_probs=129.2
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|+..+.++|+|||+|.||..+|..|.+.|+ +|.+|||++++.+.+.+.+. ....+.+++++++. +|+||+
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~-----~~~~~~~~~~~~~~---aDvVii 72 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL-----GDRVTTSAAEAVKG---ADLVIL 72 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC-----CceecCCHHHHhcC---CCEEEE
Confidence 655556799999999999999999999995 89999999998877665432 12345677777665 999999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHH-Hhh-------cCC-c---
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEE-GAR-------HGP-S--- 145 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~-~a~-------~G~-~--- 145 (505)
|+|.. ....++.++.+.++++.+|+|.++......+...+.+ ..+++|+++ |+.|++. +.. .|. .
T Consensus 73 avp~~-~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~ 150 (307)
T PRK07502 73 CVPVG-ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHL-PEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILT 150 (307)
T ss_pred CCCHH-HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhC-CCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEe
Confidence 99995 6788888888889999999999887655544444433 347789987 8887542 222 222 2
Q ss_pred cccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhH
Q 010637 146 LMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMV 190 (505)
Q Consensus 146 im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v 190 (505)
.+.++++++++.++++++.+| .+++++++......+-++
T Consensus 151 ~~~~~~~~~~~~~~~l~~~lG------~~~~~~~~~~hD~~~A~~ 189 (307)
T PRK07502 151 PPEGTDPAAVARLTAFWRALG------ARVEEMDPEHHDLVLAIT 189 (307)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEEEEcCHHHHhHHHHHH
Confidence 224678899999999999999 678888775544444333
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-14 Score=144.09 Aligned_cols=255 Identities=18% Similarity=0.200 Sum_probs=162.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhccc----CC--CCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----GQ--LPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~----g~--~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+|.||..+|..|+++|++|++|+| +++.+.+.+.+... +. ......++.++... .+|+||+++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTG---PFDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccC---CCCEEEEEe
Confidence 5899999999999999999999999999999 77887776543210 00 00112345555444 389999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCHHHhhcCC-ccccCC----C
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGG----S 151 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~~~a~~G~-~im~gg----~ 151 (505)
|+. +++++++.+.+.+.++.+||...|+.. ....+.+.+.+. ++.++++...++..-...++ .+..|. .
T Consensus 77 k~~-~~~~~~~~l~~~~~~~~~ii~~~nG~~-~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 77 KAY-QLDAAIPDLKPLVGEDTVIIPLQNGIG-QLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred ccc-CHHHHHHHHHhhcCCCCEEEEeeCCCC-hHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 996 789999999998888899998888753 233444444332 34455554433211111233 344443 2
Q ss_pred HHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHH---------------------HhHhhHHHHHHHHHH
Q 010637 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIE---------------------YGDMQLISEAYDVLK 210 (505)
Q Consensus 152 ~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~---------------------~~~~~~i~Ea~~l~~ 210 (505)
.+..+.+..+|...+ ..+....+.-...+.|++.|... .....++.|+..+++
T Consensus 155 ~~~~~~l~~~l~~~g------~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~ 228 (305)
T PRK12921 155 SERTRAVRDALAGAR------LEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVAR 228 (305)
T ss_pred CHHHHHHHHHHHhCC------CCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 345566777777766 34444444556678887777432 334567899999999
Q ss_pred HhCCCC--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHH
Q 010637 211 HVGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 211 ~~g~l~--~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
+.| ++ .+.+.+.+....... .....++..++..++ ...+|.+... .++.|+++|+|+|....
T Consensus 229 a~G-~~~~~~~~~~~~~~~~~~~-~~~~sSm~~D~~~gr-----~tEid~i~G~---------vv~~a~~~gv~~P~~~~ 292 (305)
T PRK12921 229 AEG-APLRDDVVEEIVKIFAGAP-GDMKTSMLRDMEKGR-----PLEIDHLQGV---------LLRRARAHGIPTPILDT 292 (305)
T ss_pred HcC-CCCChhHHHHHHHHHhccC-CCCCcHHHHHHHcCC-----cccHHHHHHH---------HHHHHHHhCCCCcHHHH
Confidence 988 76 334444443221111 112233444555432 1467777654 68899999999998875
Q ss_pred H
Q 010637 289 S 289 (505)
Q Consensus 289 a 289 (505)
.
T Consensus 293 l 293 (305)
T PRK12921 293 V 293 (305)
T ss_pred H
Confidence 3
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-15 Score=162.36 Aligned_cols=116 Identities=12% Similarity=0.229 Sum_probs=97.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHH---HHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcc
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFG---ELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVV 402 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~---~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~ 402 (505)
+++||+||+||+|+|++|++++|+|.|+++.. + +|.. ++++.|+.| .++|++++....+|+++++....|+
T Consensus 173 GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~---g--~~~~~l~~v~~~w~~~-~~~S~l~~~~~~~~~~~d~~~~~~l 246 (467)
T TIGR00873 173 GAGHYVKMVHNGIEYGDMQLICEAYDILKDGL---G--LSNEEIAEVFTEWNNG-ELDSYLIEITADILKKKDEDGKPLV 246 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-cccchHHHhHHHHHhccCCCCCccH
Confidence 58999999999999999999999999997432 3 5554 456668998 7899999999999998544456888
Q ss_pred cHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCh
Q 010637 403 DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARL 449 (505)
Q Consensus 403 ~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~ 449 (505)
|.+.+...+++++ ||+|++|+++|||+|+|+++++ +.+..+..|.
T Consensus 247 ~~i~~~~~~~gtg--~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~ 293 (467)
T TIGR00873 247 DKILDTAGQKGTG--KWTAISALDLGVPVTLITESVFARYLSSLKEERV 293 (467)
T ss_pred HhhcCcccCccHH--HHHHHHHHHcCCCchHHHHHHHHHhccccHHHHH
Confidence 9999999999999 9999999999999999999999 4444555544
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-13 Score=139.75 Aligned_cols=277 Identities=12% Similarity=0.105 Sum_probs=157.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhccc----C-C--CCeeeeCCHHHHH-hhcCCCcEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----G-Q--LPLTGHYTPRDFV-LSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~----g-~--~~i~~~~s~~e~v-~~l~~advIil 78 (505)
|||+|||+|.||..+|..|+++|++|.+|+|+++.++.+.+.+... + . .++....++.+.+ .. +|+||+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~Dliii 77 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDN---ATCIIL 77 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCC---CCEEEE
Confidence 4799999999999999999999999999999998888877642110 0 0 0244566777665 34 899999
Q ss_pred EcCCCchHHHHHHHHHh-cCCCCcEEEecCCCCchh-----HHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-cc-ccCC
Q 010637 79 LVKAGSPVDQTIAALSE-HMSPGDCIIDGGNEWYLN-----TERRIHEASQKGLLYLGMGVSGGEEGARHGP-SL-MPGG 150 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~-~l~~g~iIId~st~~~~~-----t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~i-m~gg 150 (505)
+||+. .++++++.+.+ .+.++..|+..+++.... .+.+.+.+....+..+..|-. ..+.+...+ .+ +.|.
T Consensus 78 avks~-~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~-a~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 78 AVPTQ-QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSF-AKEIAEKLPCSIVLAGQ 155 (326)
T ss_pred EeCHH-HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcH-HHHHHcCCCcEEEEecC
Confidence 99995 89999999998 888777777777776432 222233332222222222211 113334344 33 3444
Q ss_pred CHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHh-----------------hhHHHhHhhHHHHHHHHHHHhC
Q 010637 151 SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVH-----------------NGIEYGDMQLISEAYDVLKHVG 213 (505)
Q Consensus 151 ~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~-----------------N~i~~~~~~~i~Ea~~l~~~~g 213 (505)
+.+..+.+..+|+.-+ ..+....+.-.-.+.|++- |.....+.+++.|+..+++..|
T Consensus 156 ~~~~~~~l~~~l~~~~------~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G 229 (326)
T PRK14620 156 NETLGSSLISKLSNEN------LKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKN 229 (326)
T ss_pred CHHHHHHHHHHHCCCC------eEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhC
Confidence 5554455555554333 2222222222223334433 3444456788999999999987
Q ss_pred CC--CHHHHH------HHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchH----HHHHHHHHHcCC
Q 010637 214 GL--SNAELA------EIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTG----KWTVQQAAELSV 281 (505)
Q Consensus 214 ~l--~~~~i~------~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg----~~~~~~A~~~gv 281 (505)
. +++++. +.+..-.....+++-+... + ..+..++.+.+...+.-+| +...+.|+++|+
T Consensus 230 -~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~---l------~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i 299 (326)
T PRK14620 230 -GSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFK---I------GNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNI 299 (326)
T ss_pred -CCCCcchhhccchhhhhhheecCCCCCcHHHHHH---H------HCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCC
Confidence 5 777773 3331111011112111100 0 0112233333222111112 367789999999
Q ss_pred CcchHHHHHHHHHHhcchHHHHHHH
Q 010637 282 AAPTIAASLDCRYLSGLKEEREKAA 306 (505)
Q Consensus 282 p~p~i~~av~~r~~s~~~~~r~~~~ 306 (505)
++|++.. + .+.+...++....+.
T Consensus 300 ~~P~~~~-l-~~~~~~~~~~~~~~~ 322 (326)
T PRK14620 300 ELPICES-I-YNLLYENISLEKTIS 322 (326)
T ss_pred CCCHHHH-H-HHHHhCCCCHHHHHH
Confidence 9999885 3 344443344444433
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.4e-13 Score=132.96 Aligned_cols=195 Identities=13% Similarity=0.097 Sum_probs=133.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.++|||||+|.||.+|+.+|.++|+ +|+++||++++.+.+.+.. ++..+.+..+++.. +|+||+|||
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLavk 72 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY------GITITTNNNEVANS---ADILILSIK 72 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc------CcEEeCCcHHHHhh---CCEEEEEeC
Confidence 4589999999999999999999885 6999999999988876532 24567788888877 999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE-EeCCCCCCHHHhhcCC-ccccC--CCHHHHHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY-LGMGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~-i~~pvsGg~~~a~~G~-~im~g--g~~ea~~~ 157 (505)
+ ..+.++++++.+.+.++.+||+.-.+.. ...+.+.+... ... --+|-. +.....|. .+.++ .+++..+.
T Consensus 73 P-~~~~~vl~~l~~~~~~~~lvISi~AGi~--i~~l~~~l~~~-~~vvR~MPN~--~~~vg~g~t~~~~~~~~~~~~~~~ 146 (272)
T PRK12491 73 P-DLYSSVINQIKDQIKNDVIVVTIAAGKS--IKSTENEFDRK-LKVIRVMPNT--PVLVGEGMSALCFNEMVTEKDIKE 146 (272)
T ss_pred h-HHHHHHHHHHHHhhcCCcEEEEeCCCCc--HHHHHHhcCCC-CcEEEECCCh--HHHHcCceEEEEeCCCCCHHHHHH
Confidence 7 6899999999998888899999888764 34455555321 122 234533 23345566 33333 25567788
Q ss_pred HHHHHHHHhcccCCCCceEEeCCCc--chhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010637 158 IRDILQKVAAQVDDGPCVTYIGEGG--SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDE 226 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~vG~~G--~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~ 226 (505)
++.+|+.+| . ++.+.+.- ....+-=+--++.+.++..+.++ +.+.| ++.++..++..+
T Consensus 147 v~~lf~~~G------~-~~~~~E~~~d~~talsgsgPAf~~~~~eal~~a---~v~~G-l~~~~A~~l~~~ 206 (272)
T PRK12491 147 VLNIFNIFG------Q-TEVVNEKLMDVVTSISGSSPAYVYMFIEAMADA---AVLGG-MPRKQAYKFAAQ 206 (272)
T ss_pred HHHHHHcCC------C-EEEEcHHHhhhHHHhccCcHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 999999999 3 45554321 11111111123334455555555 44566 999999888754
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-15 Score=159.77 Aligned_cols=117 Identities=13% Similarity=0.245 Sum_probs=97.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH---HHHhcCCCceecccHHHHHHHHhcCCC-CCCCc
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGEL---ARIWKGGCIIRAVFLDRIKKAYQRNPN-LASLV 401 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i---~~iW~~Gciirs~lL~~i~~~~~~~~~-~~~ll 401 (505)
+++||+||+||+|+|++|++++|+|.|+++.. + +|..++ ++.|+.| .++|+++++...++.+.+. ....+
T Consensus 165 GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~---G--l~~~~l~~v~~~wn~g-~~~S~l~ei~~~~l~~~d~~~~~~~ 238 (459)
T PRK09287 165 GAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGL---G--LSAEEIADVFAEWNKG-ELNSYLIEITADILRQKDEETGKPL 238 (459)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-CccChHHHhHhHHHhcCCCCCCCcc
Confidence 58999999999999999999999999999421 2 655555 5668999 5899999999999987542 34588
Q ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChh
Q 010637 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (505)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~~ 450 (505)
+|.+.+...+|+++ ||++++|+++|+|+|+|+++++ +.+.++..|..
T Consensus 239 ~d~i~d~~~~~gtg--~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~ 287 (459)
T PRK09287 239 VDVILDKAGQKGTG--KWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVA 287 (459)
T ss_pred hHHhcCcccCCcHH--HHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHH
Confidence 89999999999999 9999999999999999999999 44455555543
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=135.69 Aligned_cols=192 Identities=9% Similarity=0.079 Sum_probs=132.2
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChHHHH-----HHHHhhcccCCCCeeeeC
Q 010637 7 SRIGLAGLAVM--------------------GQNLALNVAEKGFPISVYNRTTSKVD-----ETLDRAHREGQLPLTGHY 61 (505)
Q Consensus 7 ~~IgIIGlG~M--------------------G~~lA~~La~~G~~V~v~dr~~~~~~-----~l~~~~~~~g~~~i~~~~ 61 (505)
|||.|+|+|+- |.+||.+|+++||+|++|||++++++ .+.+. ++..++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~Laea-------GA~~Aa 73 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDA-------GVKVVS 73 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHC-------CCeecC
Confidence 57889998864 78999999999999999999987653 35443 356788
Q ss_pred CHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHH-HH--HCCCe---EEeCCCCC
Q 010637 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE-AS--QKGLL---YLGMGVSG 135 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~-l~--~~gi~---~i~~pvsG 135 (505)
++.++++. +|+||+|+|++.+++++++++.+.+.+|.+|||+||+.|.......+. ++ .+.+. |..+.|-|
T Consensus 74 S~aEAAa~---ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 74 DDKEAAKH---GEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred CHHHHHhC---CCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 99999988 999999999999999999999999999999999999999988876654 32 23332 22233433
Q ss_pred CHHHhhcCCccccC--------CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHH
Q 010637 136 GEEGARHGPSLMPG--------GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYD 207 (505)
Q Consensus 136 g~~~a~~G~~im~g--------g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~ 207 (505)
.+.. +-.++.| .++|..+++-++.+..+ +..+.+-..-.+...-|. ....+...+.+.+-+.
T Consensus 151 ~~~~---~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~------~~~~~~pa~l~~~v~Dm~-s~vta~~~~gil~y~~ 220 (341)
T TIGR01724 151 TPQH---GHYVIGGKPTAGKEMATEEQISKCVELAKSTG------KKAYVVPADVTSAVADMG-SLVTAVALAGVLDYYY 220 (341)
T ss_pred CCCC---ceeeeccccccccccCCHHHHHHHHHHHHHhC------CCeeecchhhcchhhhHH-HHHHHHHHHHHHHHHH
Confidence 3221 1122222 27788899999999988 556655333223333333 2223334455556666
Q ss_pred HHHHhCCCCHH
Q 010637 208 VLKHVGGLSNA 218 (505)
Q Consensus 208 l~~~~g~l~~~ 218 (505)
...+..|.+.+
T Consensus 221 ~~t~i~~ap~~ 231 (341)
T TIGR01724 221 VGTQIINAPKE 231 (341)
T ss_pred HHHHHhcCcHH
Confidence 66555545544
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.1e-14 Score=140.90 Aligned_cols=254 Identities=17% Similarity=0.203 Sum_probs=151.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc--cCCC--CeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR--EGQL--PLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~--~g~~--~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|+|||+|.||..+|..|+++|++|++++|++++.+.+.+.+.. .|.. .+....+++++ + .+|+||+++|.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~---~~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G---PQDLVILAVKA 76 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C---CCCEEEEeccc
Confidence 589999999999999999999999999999998888877765421 0000 01223445443 3 49999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCHHHhhcCC-ccccCC---CHHH
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGG---SFEA 154 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~~~a~~G~-~im~gg---~~ea 154 (505)
. +++.++..+.+.+.++.+||...|+.. ..+.+.+.+... |+.++++-..+.......+. .+..|. +.+.
T Consensus 77 ~-~~~~~~~~l~~~l~~~~~iv~~~nG~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 77 Y-QLPAALPSLAPLLGPDTPVLFLQNGVG-HLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred c-cHHHHHHHHhhhcCCCCEEEEecCCCC-cHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 6 789999999999988889999888753 223334434322 11222221222111111122 233332 2233
Q ss_pred HHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhh---------------------hHHHhHhhHHHHHHHHHHHhC
Q 010637 155 YNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN---------------------GIEYGDMQLISEAYDVLKHVG 213 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N---------------------~i~~~~~~~i~Ea~~l~~~~g 213 (505)
.+.+.++|+..+ ..+....+.-...+.|++.| ........++.|+..++++.|
T Consensus 155 ~~~l~~~l~~~~------~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G 228 (304)
T PRK06522 155 AEALADLLNAAG------LDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEG 228 (304)
T ss_pred HHHHHHHHHhcC------CCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcC
Confidence 566777777665 23322222333444444433 233445677899999999987
Q ss_pred CCC--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHH
Q 010637 214 GLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 214 ~l~--~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
++ .+.+.+.+......... ...++..++...+. ..+|.+.. +.++.|+++|+|+|....
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~-~~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~ 289 (304)
T PRK06522 229 -VHLSVEEVREYVRQVIQKTAA-NTSSMLQDLEAGRP-----TEIDAIVG---------YVLRRGRKHGIPTPLNDA 289 (304)
T ss_pred -CCCChHHHHHHHHHHhhccCC-CCchHHHHHHcCCC-----cccchhcc---------HHHHHHHHcCCCCcHHHH
Confidence 65 34444444322211111 11233345444321 35666553 578999999999998764
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.7e-14 Score=143.29 Aligned_cols=178 Identities=13% Similarity=0.117 Sum_probs=133.8
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChHH-------HHHHHH-------hhcccCCC----------CeeeeCC--HHHHHhhc
Q 010637 17 MGQNLALNVAEKGFPISVYNRTTSK-------VDETLD-------RAHREGQL----------PLTGHYT--PRDFVLSI 70 (505)
Q Consensus 17 MG~~lA~~La~~G~~V~v~dr~~~~-------~~~l~~-------~~~~~g~~----------~i~~~~s--~~e~v~~l 70 (505)
||..||..++.+|++|.+||++++. ++...+ .....|.. +++++.+ +.++++.
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~- 79 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD- 79 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc-
Confidence 8999999999999999999999842 111110 00001100 4666554 5666666
Q ss_pred CCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHH----HCCCeEEeCC-------CCCCHH
Q 010637 71 QRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS----QKGLLYLGMG-------VSGGEE 138 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~----~~gi~~i~~p-------vsGg~~ 138 (505)
+|+||.|||+...++..+ .++.+.++++.|| +||++.....++++.+. ..|+||+++| |++|+
T Consensus 80 --aD~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~- 154 (314)
T PRK08269 80 --ADLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD- 154 (314)
T ss_pred --CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC-
Confidence 999999999999998877 6787888888888 55555556667777663 3488999988 65554
Q ss_pred HhhcCCccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHH
Q 010637 139 GARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (505)
Q Consensus 139 ~a~~G~~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~ 218 (505)
++++++++++.++++.+| +.++++++.+ |++ -|. ..+.+++|++.++++++ ++++
T Consensus 155 ----------~t~~e~~~~~~~ll~~lG------k~~v~v~d~~-Gfi----~nr---i~~~~l~EAl~l~e~g~-~~~e 209 (314)
T PRK08269 155 ----------ATDPAVVDRLAALLERIG------KVPVVCGPSP-GYI----VPR---IQALAMNEAARMVEEGV-ASAE 209 (314)
T ss_pred ----------CCCHHHHHHHHHHHHHcC------CcEEEecCCC-Ccc----hHH---HHHHHHHHHHHHHHhCC-CCHH
Confidence 579999999999999999 8899998754 543 343 36677799999999988 9999
Q ss_pred HHHHHHH
Q 010637 219 ELAEIFD 225 (505)
Q Consensus 219 ~i~~v~~ 225 (505)
++++++.
T Consensus 210 ~iD~a~~ 216 (314)
T PRK08269 210 DIDKAIR 216 (314)
T ss_pred HHHHHHH
Confidence 9999974
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-13 Score=136.81 Aligned_cols=193 Identities=16% Similarity=0.226 Sum_probs=132.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh-------cccCCC----------CeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQL----------PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~i~~~~s~~e~v~ 68 (505)
.++|||||.|.||..+|..++..||+|.++|++++.+++..... ...|.+ +++...++.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~--- 79 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAA--- 79 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhH---
Confidence 46899999999999999999998899999999987654433211 011100 3455555553
Q ss_pred hcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHH--HC--CCeEEeCCCCCCHHHhhcC
Q 010637 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QK--GLLYLGMGVSGGEEGARHG 143 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~--~~--gi~~i~~pvsGg~~~a~~G 143 (505)
++.||+||.+|++...++.-+ .++-+..+++.|+-..+++.+.+ ++++.+. ++ |+||+++|....-.
T Consensus 80 -l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it--~ia~~~~rper~iG~HFfNP~~~m~LV----- 151 (307)
T COG1250 80 -LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSIT--ELAEALKRPERFIGLHFFNPVPLMPLV----- 151 (307)
T ss_pred -hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHH--HHHHHhCCchhEEEEeccCCCCcceeE-----
Confidence 334999999999998887655 67777777777776555554433 3444332 22 77888765221111
Q ss_pred CccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHH
Q 010637 144 PSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELA 221 (505)
Q Consensus 144 ~~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~ 221 (505)
-++.| .++++++.+.++.+.++ +.+ .+..+-.|+++ |.+ ....+.|++.++.++. .++++++
T Consensus 152 -EvI~g~~T~~e~~~~~~~~~~~ig------K~~-vv~~D~pGFi~----NRi---l~~~~~eA~~l~~eGv-a~~e~ID 215 (307)
T COG1250 152 -EVIRGEKTSDETVERVVEFAKKIG------KTP-VVVKDVPGFIV----NRL---LAALLNEAIRLLEEGV-ATPEEID 215 (307)
T ss_pred -EEecCCCCCHHHHHHHHHHHHHcC------CCC-EeecCCCceeh----HhH---HHHHHHHHHHHHHhCC-CCHHHHH
Confidence 12333 37899999999999999 555 33344556655 444 4566699999999987 9999999
Q ss_pred HHHH
Q 010637 222 EIFD 225 (505)
Q Consensus 222 ~v~~ 225 (505)
.+++
T Consensus 216 ~~~~ 219 (307)
T COG1250 216 AAMR 219 (307)
T ss_pred HHHH
Confidence 9975
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-13 Score=139.75 Aligned_cols=172 Identities=13% Similarity=0.156 Sum_probs=125.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|||+|.||.+||+.|.++|++|.+|+++++..+.....+... --...++++++++. +|+||+|||.. .+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~---aDlVilavP~~-~~ 73 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGV---IDELAADLQRAAAE---ADLIVLAVPVD-AT 73 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCC---CcccccCHHHHhcC---CCEEEEeCCHH-HH
Confidence 3699999999999999999999999999999887654433322110 01234566777666 99999999995 78
Q ss_pred HHHHHHHHh-cCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCHH-H-------hhcCC-ccccC---CCH
Q 010637 87 DQTIAALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEE-G-------ARHGP-SLMPG---GSF 152 (505)
Q Consensus 87 ~~vl~~l~~-~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~~-~-------a~~G~-~im~g---g~~ 152 (505)
..++.++.+ .+.++.+|.|.++..........+. ...+..|++ .|+.|++. + ...|. .+++. +++
T Consensus 74 ~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~ 152 (359)
T PRK06545 74 AALLAELADLELKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDP 152 (359)
T ss_pred HHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCH
Confidence 899999987 4888999999999876555544443 335678998 58887641 2 22344 33332 578
Q ss_pred HHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhh
Q 010637 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN 192 (505)
Q Consensus 153 ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N 192 (505)
+.++.++++++.+| .+++++.+......+.++..
T Consensus 153 ~~~~~v~~l~~~lG------a~~v~~~~~~HD~~~A~vsh 186 (359)
T PRK06545 153 DAVAELKDLLSGTG------AKFVVLDAEEHDRAVALVSH 186 (359)
T ss_pred HHHHHHHHHHHHcC------CEEEECCHHHHhHHHhHhcc
Confidence 89999999999999 67888887666666655543
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-12 Score=132.26 Aligned_cols=252 Identities=13% Similarity=0.129 Sum_probs=153.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc----cCCC---CeeeeCCHHHHHhhcCCCcEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR----EGQL---PLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~----~g~~---~i~~~~s~~e~v~~l~~advIil 78 (505)
.|+|+|||+|.||..+|..|+++|++|+++.|++. +.+.+.+.. .+.. .+....++++ +..+|+||+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~D~vil 78 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAED----MPPCDWVLV 78 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhh----cCCCCEEEE
Confidence 46999999999999999999999999999999863 344443311 0000 0112223332 234899999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCH--HHhhcCCcc---ccC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGE--EGARHGPSL---MPG 149 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~--~~a~~G~~i---m~g 149 (505)
|||.. ++.++++.+.+.+.++.+|+...|+.. ..+.+.+.+.+. |+.++++...+.. .....|... ..+
T Consensus 79 avK~~-~~~~~~~~l~~~~~~~~~iv~lqNG~~-~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~ 156 (313)
T PRK06249 79 GLKTT-ANALLAPLIPQVAAPDAKVLLLQNGLG-VEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSG 156 (313)
T ss_pred EecCC-ChHhHHHHHhhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCC
Confidence 99996 678888999999988889999988863 333444444332 3344444333221 111122211 122
Q ss_pred CC-----HHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhh---------------------HHHhHhhHHH
Q 010637 150 GS-----FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG---------------------IEYGDMQLIS 203 (505)
Q Consensus 150 g~-----~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~---------------------i~~~~~~~i~ 203 (505)
.+ .+..+.+..+|+..+ ..+....+.-..-+.|++.|. .......++.
T Consensus 157 ~~~~~~~~~~~~~l~~~l~~ag------~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~ 230 (313)
T PRK06249 157 PAADDGITARVEEGAALFRAAG------IDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMA 230 (313)
T ss_pred CcccchHHHHHHHHHHHHHhCC------CCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHH
Confidence 23 355666777888777 334444444555555655442 2334566789
Q ss_pred HHHHHHHHhCCCC--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCC
Q 010637 204 EAYDVLKHVGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSV 281 (505)
Q Consensus 204 Ea~~l~~~~g~l~--~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gv 281 (505)
|++.++++.| ++ .+.+.++++. ..... ....++..++...+ ...+|.+.. +.++.|+++|+
T Consensus 231 E~~~va~a~G-i~~~~~~~~~~~~~-~~~~~-~~~sSM~qD~~~gr-----~tEid~i~G---------~vv~~a~~~Gi 293 (313)
T PRK06249 231 EVIQGAAACG-HTLPEGYADHMLAV-TERMP-DYRPSMYHDFEEGR-----PLELEAIYA---------NPLAAARAAGC 293 (313)
T ss_pred HHHHHHHhcC-CCCChhHHHHHHHH-hhcCC-CCCChHHHHHHCCC-----cccHHHHhh---------HHHHHHHHhCC
Confidence 9999999988 76 3334333332 12111 11233444554432 247888765 57999999999
Q ss_pred CcchHHH
Q 010637 282 AAPTIAA 288 (505)
Q Consensus 282 p~p~i~~ 288 (505)
|+|+...
T Consensus 294 ~~P~~~~ 300 (313)
T PRK06249 294 AMPRVEM 300 (313)
T ss_pred CCcHHHH
Confidence 9998775
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-13 Score=127.16 Aligned_cols=149 Identities=20% Similarity=0.241 Sum_probs=100.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhhcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
|||+|||+|.+|..+|..|+++||+|++||.++++++.+.+.. ...| +++.+++.++.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~--~l~~t~~~~~ai~~-- 76 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAG--RLRATTDIEEAIKD-- 76 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTT--SEEEESEHHHHHHH--
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccc--cchhhhhhhhhhhc--
Confidence 6899999999999999999999999999999999988766421 1112 67888999998887
Q ss_pred CCcEEEEEcCCC---------chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHH-HHHHCC-----CeEEeCCCC--
Q 010637 72 RPRSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH-EASQKG-----LLYLGMGVS-- 134 (505)
Q Consensus 72 ~advIil~vp~~---------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~-~l~~~g-----i~~i~~pvs-- 134 (505)
+|++|+|||.+ ..++++++.+.+.+.++++||--||..|.+++++.. .+++.+ +++.-+|-.
T Consensus 77 -adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~ 155 (185)
T PF03721_consen 77 -ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLR 155 (185)
T ss_dssp --SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------
T ss_pred -cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccC
Confidence 99999999864 347888899999999999999999999999996654 444332 355556622
Q ss_pred -CCHH-HhhcCCccccCCCHHHHH-HHHH
Q 010637 135 -GGEE-GARHGPSLMPGGSFEAYN-NIRD 160 (505)
Q Consensus 135 -Gg~~-~a~~G~~im~gg~~ea~~-~v~~ 160 (505)
|... ..+.-+.++.|.+++..+ .+++
T Consensus 156 ~G~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 156 EGRAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp TTSHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred CCCcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 2221 222223666666555433 5554
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.3e-12 Score=122.46 Aligned_cols=195 Identities=14% Similarity=0.081 Sum_probs=129.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC---c-EEEEeC-ChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF---P-ISVYNR-TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~---~-V~v~dr-~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.+||+|||+|.||.+++..|+++|+ + |.+++| ++++.+.+.+.. ++..+.++++++++ +|+||+++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~DiViiav 74 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------NVSTTTDWKQHVTS---VDTIVLAM 74 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------CcEEeCChHHHHhc---CCEEEEec
Confidence 4689999999999999999998873 3 777887 467777776542 24566788888876 99999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE-eCCCCCCHHHhhcCC-cc--ccCCCHHHHH
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP-SL--MPGGSFEAYN 156 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsGg~~~a~~G~-~i--m~gg~~ea~~ 156 (505)
|+. ..+++++++.+.++ +++||+++.+...+. +.+.+.. +..++ -+|-.. .....|. .+ -..++++..+
T Consensus 75 p~~-~~~~v~~~l~~~~~-~~~vis~~~gi~~~~--l~~~~~~-~~~v~r~~Pn~a--~~v~~g~~~~~~~~~~~~~~~~ 147 (245)
T PRK07634 75 PPS-AHEELLAELSPLLS-NQLVVTVAAGIGPSY--LEERLPK-GTPVAWIMPNTA--AEIGKSISLYTMGQSVNETHKE 147 (245)
T ss_pred CHH-HHHHHHHHHHhhcc-CCEEEEECCCCCHHH--HHHHcCC-CCeEEEECCcHH--HHHhcCCeEEeeCCCCCHHHHH
Confidence 995 78999999888775 679999988875443 3333322 22222 345222 2334443 22 2346888999
Q ss_pred HHHHHHHHHhcccCCCCceEEeCCCc--chhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 010637 157 NIRDILQKVAAQVDDGPCVTYIGEGG--SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEW 227 (505)
Q Consensus 157 ~v~~ll~~iga~~~~~~~v~~vG~~G--~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~ 227 (505)
.++.+|+.+| .++ ++.+.- ..+.+--+..++.+.++..+.++ +.+.| ++.++..+++.+.
T Consensus 148 ~v~~lf~~~G------~~~-~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~G-l~~~~a~~~~~~~ 209 (245)
T PRK07634 148 TLQLILKGIG------TSQ-LCTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYG-VDEETAKHLVIQM 209 (245)
T ss_pred HHHHHHHhCC------CEE-EECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHHH
Confidence 9999999999 333 454321 11111112223444444444444 56777 9999998887543
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.8e-12 Score=126.81 Aligned_cols=165 Identities=15% Similarity=0.201 Sum_probs=119.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..++|+|||+|.||..+|..|.+.|++|.+||+++.. +...+. ++....+.++++. ..+|+||+|+|..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~-------gv~~~~~~~e~~~--~~aDvVilavp~~- 103 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAEL-------GVSFFRDPDDFCE--EHPDVVLLCTSIL- 103 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHc-------CCeeeCCHHHHhh--CCCCEEEEecCHH-
Confidence 3468999999999999999999999999999999642 222221 2455678888763 1289999999985
Q ss_pred hHHHHHHHH-HhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHHH--hhcCCcc-cc-------CCCH
Q 010637 85 PVDQTIAAL-SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEG--ARHGPSL-MP-------GGSF 152 (505)
Q Consensus 85 ~v~~vl~~l-~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~~--a~~G~~i-m~-------gg~~ 152 (505)
.+.+++.++ .+.+.++.+|+|.+++.-.....+.+.+. .+..|+++ |+.|.+.+ ...+..+ .. +.++
T Consensus 104 ~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~-~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~ 182 (304)
T PLN02256 104 STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLP-EEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGERE 182 (304)
T ss_pred HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCC-CCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCH
Confidence 788899888 67788999999999976555554544443 35678875 77776543 2333322 22 2367
Q ss_pred HHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhh
Q 010637 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187 (505)
Q Consensus 153 ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~v 187 (505)
++++.++++++.+| ..++.+.+...-.++
T Consensus 183 ~~~~~l~~l~~~lG------a~v~~~~~eeHD~~v 211 (304)
T PLN02256 183 ARCERFLDIFEEEG------CRMVEMSCEEHDRYA 211 (304)
T ss_pred HHHHHHHHHHHHCC------CEEEEeCHHHHhHHH
Confidence 88999999999999 567777765444443
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-12 Score=127.64 Aligned_cols=167 Identities=17% Similarity=0.223 Sum_probs=119.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCee--eeCCH-HHHHhhcCCCcEEEEEcC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLT--GHYTP-RDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~--~~~s~-~e~v~~l~~advIil~vp 81 (505)
++++|+|+|+|.||..+|+.|.++|+.|.+++++............ ++. ...+. .+.+ ..+|+||++||
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-----gv~d~~~~~~~~~~~---~~aD~VivavP 73 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-----GVIDELTVAGLAEAA---AEADLVIVAVP 73 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-----Ccccccccchhhhhc---ccCCEEEEecc
Confidence 3578999999999999999999999999877766654332222211 111 11222 2333 34899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCH--HHhhcCC--ccccCC--CHHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGE--EGARHGP--SLMPGG--SFEA 154 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~--~~a~~G~--~im~gg--~~ea 154 (505)
-. .+..+++++.|.+++|.+|+|.++..-...+...+...+.. +|++. |+.|.+ ..-..+. .+.++. +.+.
T Consensus 74 i~-~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~ 151 (279)
T COG0287 74 IE-ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEW 151 (279)
T ss_pred HH-HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHH
Confidence 95 78999999999999999999999998777766666655545 89987 777763 3334455 334443 4678
Q ss_pred HHHHHHHHHHHhcccCCCCceEEeCCCcchhhh
Q 010637 155 YNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~v 187 (505)
++++..+++.+| ..++++.+.-.-..+
T Consensus 152 ~~~~~~~~~~~g------a~~v~~~~eeHD~~~ 178 (279)
T COG0287 152 VEEVKRLWEALG------ARLVEMDAEEHDRVM 178 (279)
T ss_pred HHHHHHHHHHcC------CEEEEcChHHHhHHH
Confidence 999999999999 467787765444444
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-12 Score=144.76 Aligned_cols=192 Identities=13% Similarity=0.214 Sum_probs=136.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh-------hcccCC----------CCeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQ----------LPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~----------~~i~~~~s~~e~v~ 68 (505)
..+|+|||+|.||..||..++.+||+|++||++++.++...+. ....|. .+++++.+++++ +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 391 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF-E 391 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-c
Confidence 3579999999999999999999999999999999876543211 011110 057777787554 4
Q ss_pred hcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCC-CCCCHHHhhc
Q 010637 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMG-VSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~p-vsGg~~~a~~ 142 (505)
. +|+||.+||++..++.-+ .+|.+.++++.||...|++.+.+ .+++.+... |.||+.+| ...-.
T Consensus 392 ~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~~g~Hff~P~~~~~lV----- 461 (715)
T PRK11730 392 R---VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV----- 461 (715)
T ss_pred C---CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCCccEEEEecCCcccccceE-----
Confidence 3 999999999998887655 78888888888887666665443 344443321 56666543 11111
Q ss_pred CCccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHH
Q 010637 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
-++.| .++++++.+..+++.++ +.++.+. +..|.. .|.+.+. +++|++.++++ | .++++|
T Consensus 462 --Evv~g~~T~~~~~~~~~~~~~~lg------k~pv~v~-d~pGfv----~nRi~~~---~~~ea~~lv~~-G-a~~e~I 523 (715)
T PRK11730 462 --EVIRGEKTSDETIATVVAYASKMG------KTPIVVN-DCPGFF----VNRVLFP---YFAGFSQLLRD-G-ADFRQI 523 (715)
T ss_pred --EeeCCCCCCHHHHHHHHHHHHHhC------CceEEec-CcCchh----HHHHHHH---HHHHHHHHHHc-C-CCHHHH
Confidence 23343 48899999999999999 8888885 455654 4665444 55899999875 5 899999
Q ss_pred HHHHHH
Q 010637 221 AEIFDE 226 (505)
Q Consensus 221 ~~v~~~ 226 (505)
+.++..
T Consensus 524 D~a~~~ 529 (715)
T PRK11730 524 DKVMEK 529 (715)
T ss_pred HHHHHh
Confidence 999753
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=125.87 Aligned_cols=162 Identities=18% Similarity=0.163 Sum_probs=111.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc----cCCCCee-eeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR----EGQLPLT-GHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~----~g~~~i~-~~~s~~e~v~~l~~advIil~v 80 (505)
|||+||| +|.||..|+..|+++||+|.+++|++++++.+.+.... .| .... ...+..+.++. +|+||++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g-~~~~~~~~~~~ea~~~---aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGG-SDIKVTGADNAEAAKR---ADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccC-CCceEEEeChHHHHhc---CCEEEEEC
Confidence 5899997 99999999999999999999999999998877653211 00 0011 22355666666 99999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCchh---------------HHHHHHHHHHCCCeEEeC-C-----CCCCHHH
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN---------------TERRIHEASQKGLLYLGM-G-----VSGGEEG 139 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~---------------t~~~~~~l~~~gi~~i~~-p-----vsGg~~~ 139 (505)
|.. .+.+++.++.+.+. +++|||+++....+ ++.+++.+.. +.+++.+ + +..+. .
T Consensus 77 p~~-~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~-~ 152 (219)
T TIGR01915 77 PWD-HVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDV-D 152 (219)
T ss_pred CHH-HHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCC-C
Confidence 995 78888888877665 58999999987641 1334444432 1334432 2 22221 1
Q ss_pred hhcCC-ccccCCCHHHHHHHHHHHHHH-hcccCCCCceEEeCCCc
Q 010637 140 ARHGP-SLMPGGSFEAYNNIRDILQKV-AAQVDDGPCVTYIGEGG 182 (505)
Q Consensus 140 a~~G~-~im~gg~~ea~~~v~~ll~~i-ga~~~~~~~v~~vG~~G 182 (505)
...+. .+++|.++++.+.+..|.+.+ | -.++.+|+..
T Consensus 153 ~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G------~~~vd~G~l~ 191 (219)
T TIGR01915 153 DEVDCDVLVCGDDEEAKEVVAELAGRIDG------LRALDAGPLE 191 (219)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHhcCC------CCcccCCchh
Confidence 11233 666777788889999999999 8 5678888743
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-12 Score=144.27 Aligned_cols=193 Identities=15% Similarity=0.224 Sum_probs=137.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh-------cccCCC----------CeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQL----------PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~i~~~~s~~e~v~ 68 (505)
..+|+|||+|.||..||..++.+|++|.++|++++.+++..+.. ...|.+ +++++.+++++ +
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 413 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGF-K 413 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-c
Confidence 35799999999999999999999999999999998765533211 011100 57777787654 3
Q ss_pred hcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH----CCCeEEeCCC-CCCHHHhhc
Q 010637 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGV-SGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~pv-sGg~~~a~~ 142 (505)
+ +|+||.+||++..++.-+ .+|.+.++++.|+...|++.+.+ +++..+.. .|+||+..+- +.-.
T Consensus 414 ~---aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~ig~Hff~P~~~m~Lv----- 483 (737)
T TIGR02441 414 N---ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIK--DIAAVSSRPEKVIGMHYFSPVDKMQLL----- 483 (737)
T ss_pred c---CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCccceEEEeccCCcccCceE-----
Confidence 3 999999999998887655 78888888888887666555433 44444432 2667765431 1111
Q ss_pred CCcccc--CCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHH
Q 010637 143 GPSLMP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~im~--gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
-++. ..++++++.+..++..++ +.++.+++ ..|+++ |.+. ...+.|++.++.+ | +++++|
T Consensus 484 --Evv~g~~Ts~~~~~~~~~~~~~lg------k~pv~v~d-~pGFi~----NRi~---~~~~~ea~~lv~e-G-v~~~~I 545 (737)
T TIGR02441 484 --EIITHDGTSKDTLASAVAVGLKQG------KVVIVVKD-GPGFYT----TRCL---GPMLAEVIRLLQE-G-VDPKKL 545 (737)
T ss_pred --EEeCCCCCCHHHHHHHHHHHHHCC------CeEEEECC-cCCchH----HHHH---HHHHHHHHHHHHc-C-CCHHHH
Confidence 1333 358899999999999999 88888854 556554 5554 4566999999876 5 899999
Q ss_pred HHHHHHh
Q 010637 221 AEIFDEW 227 (505)
Q Consensus 221 ~~v~~~~ 227 (505)
+.++..+
T Consensus 546 D~a~~~~ 552 (737)
T TIGR02441 546 DKLTTKF 552 (737)
T ss_pred HHHHHHc
Confidence 9997543
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-11 Score=119.67 Aligned_cols=189 Identities=15% Similarity=0.151 Sum_probs=125.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCCh-HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G----~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|++|+|||+|.||.+|+..|.++| ++|.+|+|++ ++.+.+..... .+..+.+..++++. +|+||+|+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~-----~~~~~~~~~e~~~~---aDvVilav 72 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYP-----TVELADNEAEIFTK---CDHSFICV 72 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcC-----CeEEeCCHHHHHhh---CCEEEEec
Confidence 368999999999999999999998 7899999865 44455443321 23456788888776 99999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE-eCCCCCCHHHhhcCCc-cccC--CCHHHHH
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGPS-LMPG--GSFEAYN 156 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsGg~~~a~~G~~-im~g--g~~ea~~ 156 (505)
|+ ..+.+++.++.+.+.++.+||...++.... ++.+.+.. ..++ -+|-. +.....|.+ +..+ -+++..+
T Consensus 73 pp-~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~--~l~~~~~~--~~vvR~MPN~--~~~~g~g~t~~~~~~~~~~~~~~ 145 (277)
T PRK06928 73 PP-LAVLPLLKDCAPVLTPDRHVVSIAAGVSLD--DLLEITPG--LQVSRLIPSL--TSAVGVGTSLVAHAETVNEANKS 145 (277)
T ss_pred CH-HHHHHHHHHHHhhcCCCCEEEEECCCCCHH--HHHHHcCC--CCEEEEeCcc--HHHHhhhcEEEecCCCCCHHHHH
Confidence 98 478999999999888888999988886443 45554432 1232 24433 233456663 3333 2566778
Q ss_pred HHHHHHHHHhcccCCCCceEEeCCC---------cchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010637 157 NIRDILQKVAAQVDDGPCVTYIGEG---------GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDE 226 (505)
Q Consensus 157 ~v~~ll~~iga~~~~~~~v~~vG~~---------G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~ 226 (505)
.++.+|+.+|. ++++.+. |+|- ++.+.++..+.++ +.+.||++.++..++..+
T Consensus 146 ~v~~l~~~~G~-------~~~v~E~~~d~~tal~gsgP-------A~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~ 207 (277)
T PRK06928 146 RLEETLSHFSH-------VMTIREENMDIASNLTSSSP-------GFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNF 207 (277)
T ss_pred HHHHHHHhCCC-------EEEEchhhCceeeeeecCHH-------HHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHH
Confidence 89999999993 3343221 2221 1222233333333 334434999998888753
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.6e-12 Score=141.71 Aligned_cols=191 Identities=17% Similarity=0.239 Sum_probs=134.8
Q ss_pred CCcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChHHHHHHHHhh-------cccCC----------CCeeeeCCHHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRA-------HREGQ----------LPLTGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La-~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~----------~~i~~~~s~~e~v 67 (505)
..+|+|||+|.||..||..++ .+|++|++||++++.++...+.. ...|. .+++++++++++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 382 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGF- 382 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHh-
Confidence 357999999999999999998 58999999999998654432210 00000 057777787543
Q ss_pred hhcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCC-CCHHHhh
Q 010637 68 LSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVS-GGEEGAR 141 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvs-Gg~~~a~ 141 (505)
+. +|+||.+||++..++.-+ .+|.+.++++.|+...|++.+.+ ++++.+... |+||+.+|-. .-.
T Consensus 383 ~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~~g~HffnP~~~~~lV---- 453 (699)
T TIGR02440 383 KD---VDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIG--QIAAAASRPENVIGLHYFSPVEKMPLV---- 453 (699)
T ss_pred cc---CCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--HHHHhcCCcccEEEEecCCccccCceE----
Confidence 33 999999999998887554 78888888887777665555433 344444321 6677665421 111
Q ss_pred cCCccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHH
Q 010637 142 HGPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 142 ~G~~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
-++.| .++++++.+..+++.++ +.++.+. +..|+.+ |.+. ..+++|++.++++ | +++++
T Consensus 454 ---Evv~g~~T~~~~~~~~~~~~~~~g------k~pv~v~-d~pGfi~----nRl~---~~~~~Ea~~l~~~-G-~~~~d 514 (699)
T TIGR02440 454 ---EVIPHAGTSEQTIATTVALAKKQG------KTPIVVA-DKAGFYV----NRIL---APYMNEAARLLLE-G-EPVEH 514 (699)
T ss_pred ---EEeCCCCCCHHHHHHHHHHHHHcC------CeEEEEc-cccchHH----HHHH---HHHHHHHHHHHHC-C-CCHHH
Confidence 23333 58899999999999999 8888885 4566554 5554 4566999999874 5 79999
Q ss_pred HHHHHH
Q 010637 220 LAEIFD 225 (505)
Q Consensus 220 i~~v~~ 225 (505)
|+.++.
T Consensus 515 ID~a~~ 520 (699)
T TIGR02440 515 IDKALV 520 (699)
T ss_pred HHHHHH
Confidence 999974
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7e-11 Score=116.11 Aligned_cols=194 Identities=19% Similarity=0.182 Sum_probs=133.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G----~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+++|||||.|+||.+|+..|.++| .+|++.||++++.+.+.+... +..+++..++++. +|+||++|+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g------~~~~~~~~~~~~~---advv~LavK 71 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYG------VVTTTDNQEAVEE---ADVVFLAVK 71 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcC------CcccCcHHHHHhh---CCEEEEEeC
Confidence 468999999999999999999999 689999999999887766542 3347778888887 999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCHHHhhcCC-ccccC--CCHHHHHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~~~a~~G~-~im~g--g~~ea~~~ 157 (505)
+ ..+.+++..+.+ ..++++||....+.+ ...+...+. +..++- +|-. +.....|. .+..+ .+++..+.
T Consensus 72 P-q~~~~vl~~l~~-~~~~~lvISiaAGv~--~~~l~~~l~--~~~vvR~MPNt--~a~vg~g~t~i~~~~~~~~~~~~~ 143 (266)
T COG0345 72 P-QDLEEVLSKLKP-LTKDKLVISIAAGVS--IETLERLLG--GLRVVRVMPNT--PALVGAGVTAISANANVSEEDKAF 143 (266)
T ss_pred h-HhHHHHHHHhhc-ccCCCEEEEEeCCCC--HHHHHHHcC--CCceEEeCCCh--HHHHcCcceeeecCccCCHHHHHH
Confidence 9 589999999998 788999999877764 344455544 334443 3533 23334555 33333 36777889
Q ss_pred HHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHH-HHhCCCCHHHHHHHHHH
Q 010637 158 IRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVL-KHVGGLSNAELAEIFDE 226 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~-~~~g~l~~~~i~~v~~~ 226 (505)
+..+|+.+| .++++.+.---.+.-+. +-.-+.+..+.|++.-+ .+.| ++.++..++..+
T Consensus 144 v~~l~~~~G-------~v~~v~E~~~da~Tais--GSgPAyv~~~iEal~~agv~~G-l~~~~A~~l~~~ 203 (266)
T COG0345 144 VEALLSAVG-------KVVEVEESLMDAVTALS--GSGPAYVFLFIEALADAGVRLG-LPREEARELAAQ 203 (266)
T ss_pred HHHHHHhcC-------CeEEechHHhhHHHHHh--cCCHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 999999999 56677642111111111 11111233334444443 4566 999998888643
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-12 Score=142.27 Aligned_cols=191 Identities=16% Similarity=0.248 Sum_probs=137.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh-------cccCCC----------CeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQL----------PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~i~~~~s~~e~v~ 68 (505)
..+|+|||+|.||..||..++.+|++|+++|++++.+++..+.. ...|.+ +++++.+++++ +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 391 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGF-D 391 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-c
Confidence 35799999999999999999999999999999998765433211 111100 57777777554 4
Q ss_pred hcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH--C--CCeEEeCC-CCCCHHHhhc
Q 010637 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--K--GLLYLGMG-VSGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~--gi~~i~~p-vsGg~~~a~~ 142 (505)
. +|+||.+||++..++.-+ .+|.+.++++.|+...|++.+.+ +++..+.. + |+||+.+| +..-.
T Consensus 392 ~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~--~ia~~~~~p~r~ig~Hff~P~~~~~lv----- 461 (714)
T TIGR02437 392 N---VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV----- 461 (714)
T ss_pred C---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCcccEEEEecCCCcccCceE-----
Confidence 3 999999999998887555 78888888888887766665443 34444432 2 66776543 22111
Q ss_pred CCccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHH
Q 010637 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
-++.| .++++++.+..++..++ +.++.+.+ ..|++ .|.+.. ..+.|++.++++ | .++++|
T Consensus 462 --Evv~g~~Ts~~~~~~~~~~~~~lg------k~pv~v~d-~pGfi----~NRl~~---~~~~ea~~l~~e-G-~~~~~I 523 (714)
T TIGR02437 462 --EVIRGEKSSDETIATVVAYASKMG------KTPIVVND-CPGFF----VNRVLF---PYFGGFSKLLRD-G-ADFVRI 523 (714)
T ss_pred --eecCCCCCCHHHHHHHHHHHHHcC------CEEEEeCC-cccch----HHHHHH---HHHHHHHHHHHC-C-CCHHHH
Confidence 13333 47899999999999999 88888864 56655 466644 455999999875 5 899999
Q ss_pred HHHHH
Q 010637 221 AEIFD 225 (505)
Q Consensus 221 ~~v~~ 225 (505)
+.++.
T Consensus 524 D~a~~ 528 (714)
T TIGR02437 524 DKVME 528 (714)
T ss_pred HHHHH
Confidence 99974
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.3e-12 Score=138.04 Aligned_cols=159 Identities=14% Similarity=0.192 Sum_probs=114.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+.++|||||+|.||..+|..|.+.|++|.+|||+... +...+. ++..+.++++++.. .+|+||+|||. .
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~-------Gv~~~~~~~el~~~--~aDvVILavP~-~ 436 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKL-------GVSYFSDADDLCEE--HPEVILLCTSI-L 436 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHc-------CCeEeCCHHHHHhc--CCCEEEECCCh-H
Confidence 4578999999999999999999999999999999653 333322 24566788887652 28999999998 4
Q ss_pred hHHHHHHHHHh-cCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE-eCCCCCCHHHhhcCC---c-----cccCCCHHH
Q 010637 85 PVDQTIAALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP---S-----LMPGGSFEA 154 (505)
Q Consensus 85 ~v~~vl~~l~~-~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsGg~~~a~~G~---~-----im~gg~~ea 154 (505)
.+..+++++.+ .+++|.+|+|++++.. ...+..+.+...+..|+ ..|+.|.+.+ ..|. . .+++++.+.
T Consensus 437 ~~~~vi~~l~~~~lk~g~ivvDv~SvK~-~~~~~~~~~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~ 514 (667)
T PLN02712 437 STEKVLKSLPFQRLKRSTLFVDVLSVKE-FPRNLFLQHLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRR 514 (667)
T ss_pred HHHHHHHHHHHhcCCCCcEEEECCCccH-HHHHHHHHhccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcch
Confidence 78999988875 6788999999999873 33344444444577888 5799987754 2331 1 334555554
Q ss_pred HH---HHHHHHHHHhcccCCCCceEEeCCCc
Q 010637 155 YN---NIRDILQKVAAQVDDGPCVTYIGEGG 182 (505)
Q Consensus 155 ~~---~v~~ll~~iga~~~~~~~v~~vG~~G 182 (505)
.+ .+..+++.+| .+++.+.+..
T Consensus 515 ~~~~~~l~~l~~~lG------a~vv~ms~ee 539 (667)
T PLN02712 515 VSRCDSFLDIFAREG------CRMVEMSCAE 539 (667)
T ss_pred HHHHHHHHHHHHHcC------CEEEEeCHHH
Confidence 44 4558888888 5677776643
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-12 Score=119.61 Aligned_cols=166 Identities=16% Similarity=0.145 Sum_probs=112.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
||+|+|+|.|+||.+||++|++.||+|.+-+|+.++..+........ .+ ...+++++++. +|+||++||-. .
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~---~i-~~~~~~dA~~~---aDVVvLAVP~~-a 72 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGP---LI-TGGSNEDAAAL---ADVVVLAVPFE-A 72 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhcc---cc-ccCChHHHHhc---CCEEEEeccHH-H
Confidence 47899999999999999999999999999966655433333322211 23 34577777777 99999999995 7
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCc---------------hhHHHHHHHHHHC----CCeEEeCCCCCCHHHhhcCC-c
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWY---------------LNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-S 145 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~---------------~~t~~~~~~l~~~----gi~~i~~pvsGg~~~a~~G~-~ 145 (505)
+..++.++...+. |+||||++|..+ ..++.+++.++.. .++-+.+...-......... .
T Consensus 73 ~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v 151 (211)
T COG2085 73 IPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDV 151 (211)
T ss_pred HHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeE
Confidence 8889999988775 999999999631 1123333333321 22223322211111111222 6
Q ss_pred cccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhh
Q 010637 146 LMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 186 (505)
Q Consensus 146 im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~ 186 (505)
+++|.|.++.+.+.++.+.+| -..+-+|+...++.
T Consensus 152 ~vagDD~~Ak~~v~~L~~~iG------~~~ld~G~L~~a~~ 186 (211)
T COG2085 152 LVAGDDAEAKAVVAELAEDIG------FRPLDAGPLENARI 186 (211)
T ss_pred EEecCcHHHHHHHHHHHHhcC------cceeeccccccccc
Confidence 677888899999999999999 66778887554443
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.2e-12 Score=140.47 Aligned_cols=192 Identities=18% Similarity=0.252 Sum_probs=135.1
Q ss_pred CCcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChHHHHHHHHh-------hcccCC----------CCeeeeCCHHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDR-------AHREGQ----------LPLTGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La-~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~----------~~i~~~~s~~e~v 67 (505)
..+|+|||+|.||..||..++ .+|++|.+||++++.++...+. ....|. .++++++++++ +
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 387 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRG-F 387 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHH-h
Confidence 357999999999999999999 8899999999999865543211 000000 05777777754 3
Q ss_pred hhcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCHHHhhc
Q 010637 68 LSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARH 142 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~~~a~~ 142 (505)
++ +|+||.+||+...++.-+ .+|.+.++++.|+...|++.+.+ .+++.+... |+||+..|-.-.
T Consensus 388 ~~---aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~ig~Hff~P~~~~~------ 456 (708)
T PRK11154 388 KH---ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIG--QIAAAAARPEQVIGLHYFSPVEKMP------ 456 (708)
T ss_pred cc---CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHHhcCcccceEEEecCCccccCc------
Confidence 44 999999999998887555 78888888888887766665543 344433321 566665431110
Q ss_pred CCccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHH
Q 010637 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 143 G~~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
-.-+++| .++++.+.+..+++.++ +.++.+. +..|..+ |.+ ...+++|++.++++ | ++++++
T Consensus 457 lVEvv~g~~Ts~~~~~~~~~~~~~~g------k~pv~v~-d~pGfi~----nRl---~~~~~~EA~~lv~e-G-v~~~dI 520 (708)
T PRK11154 457 LVEVIPHAKTSAETIATTVALAKKQG------KTPIVVR-DGAGFYV----NRI---LAPYINEAARLLLE-G-EPIEHI 520 (708)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHcC------CceEEEe-ccCcHHH----HHH---HHHHHHHHHHHHHc-C-CCHHHH
Confidence 0023333 58899999999999999 7788885 4556554 554 44556999999886 5 899999
Q ss_pred HHHHH
Q 010637 221 AEIFD 225 (505)
Q Consensus 221 ~~v~~ 225 (505)
+.++.
T Consensus 521 D~a~~ 525 (708)
T PRK11154 521 DAALV 525 (708)
T ss_pred HHHHH
Confidence 99974
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-12 Score=120.76 Aligned_cols=153 Identities=18% Similarity=0.333 Sum_probs=101.2
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc-------ccCCC----------CeeeeCCHHHHHhhc
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REGQL----------PLTGHYTPRDFVLSI 70 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~~----------~i~~~~s~~e~v~~l 70 (505)
+|+|||+|.||..+|..++.+|++|.+||++++.++...+... ..|.+ ++...+++++++ +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~- 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D- 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h-
Confidence 6999999999999999999999999999999987654432211 01111 678889999888 4
Q ss_pred CCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHH--HC--CCeEEeCCCCCCHHHhhcCCc
Q 010637 71 QRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QK--GLLYLGMGVSGGEEGARHGPS 145 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~--~~--gi~~i~~pvsGg~~~a~~G~~ 145 (505)
+|+||.++|+...++.-+ .+|.+.++++.+|...|++.+.. +++..+. ++ |+||+.+|-.-... -
T Consensus 79 --adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~--~la~~~~~p~R~ig~Hf~~P~~~~~lV------E 148 (180)
T PF02737_consen 79 --ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSIS--ELAAALSRPERFIGMHFFNPPHLMPLV------E 148 (180)
T ss_dssp --ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HH--HHHTTSSTGGGEEEEEE-SSTTT--EE------E
T ss_pred --hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHH--HHHhccCcCceEEEEecccccccCceE------E
Confidence 999999999998887655 78888888888888776666433 3443332 22 67777644211000 1
Q ss_pred cccC--CCHHHHHHHHHHHHHHhcccCCCCceEEe
Q 010637 146 LMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYI 178 (505)
Q Consensus 146 im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~v 178 (505)
+++| .++++++.+..+++.++ +.++.+
T Consensus 149 vv~~~~T~~~~~~~~~~~~~~~g------k~pv~v 177 (180)
T PF02737_consen 149 VVPGPKTSPETVDRVRALLRSLG------KTPVVV 177 (180)
T ss_dssp EEE-TTS-HHHHHHHHHHHHHTT-------EEEEE
T ss_pred EeCCCCCCHHHHHHHHHHHHHCC------CEEEEe
Confidence 3333 58899999999999999 777766
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-12 Score=108.11 Aligned_cols=90 Identities=20% Similarity=0.332 Sum_probs=77.0
Q ss_pred cEEEEcccHHHHHHHHHHHhCC---CcEEEE-eCChHHHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEEEEcCC
Q 010637 8 RIGLAGLAVMGQNLALNVAEKG---FPISVY-NRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G---~~V~v~-dr~~~~~~~l~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIil~vp~ 82 (505)
||||||.|.||.+|+..|.++| ++|.++ +|++++.+++.++.. +.... +..++++. +|+||++||+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~------~~~~~~~~~~~~~~---advvilav~p 71 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG------VQATADDNEEAAQE---ADVVILAVKP 71 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT------TEEESEEHHHHHHH---TSEEEE-S-G
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc------cccccCChHHhhcc---CCEEEEEECH
Confidence 6999999999999999999999 999955 999999999887642 34455 89999998 9999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
. .+.+++.++ +...++++|||..+
T Consensus 72 ~-~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 72 Q-QLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp G-GHHHHHHHH-HHHHTTSEEEEEST
T ss_pred H-HHHHHHHHH-hhccCCCEEEEeCC
Confidence 5 789999999 77789999999875
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-11 Score=124.82 Aligned_cols=256 Identities=14% Similarity=0.104 Sum_probs=149.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh-cc---cCCC-Ceee-eCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-HR---EGQL-PLTG-HYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-~~---~g~~-~i~~-~~s~~e~v~~l~~advIil~ 79 (505)
.|||+|||+|.||.-+|..|++.|++|++++|+.++++.+.+++ .. .|.. .... ..+. +.+...|+||++
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~----~~~~~~D~viv~ 77 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETA----DAAEPIHRLLLA 77 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCc----ccccccCEEEEE
Confidence 46899999999999999999999999999999988888777542 11 0100 0000 1111 112347999999
Q ss_pred cCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCHHHhhcCC-ccccCC-CHH
Q 010637 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGG-SFE 153 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~~~a~~G~-~im~gg-~~e 153 (505)
|+.. ++++++..+.+.+.++.+|+-.-|+.... +.+.+.+... |+.++++...+.-.-...|. .+..|. +.+
T Consensus 78 vK~~-~~~~al~~l~~~l~~~t~vv~lQNGv~~~-e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~ 155 (305)
T PRK05708 78 CKAY-DAEPAVASLAHRLAPGAELLLLQNGLGSQ-DAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNP 155 (305)
T ss_pred CCHH-hHHHHHHHHHhhCCCCCEEEEEeCCCCCH-HHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCc
Confidence 9996 68889999999999999999999987432 2344444322 22233322111100001111 122332 223
Q ss_pred HHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHH------------------HhHhhHHHHHHHHHHHhCCC
Q 010637 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIE------------------YGDMQLISEAYDVLKHVGGL 215 (505)
Q Consensus 154 a~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~------------------~~~~~~i~Ea~~l~~~~g~l 215 (505)
..+++.++|..-+- .+.+..+.-...+-|++-|... ..+.+++.|++.++++.| +
T Consensus 156 ~~~~l~~~l~~ag~------~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G-~ 228 (305)
T PRK05708 156 TAPAWLDDLREAGI------PHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCG-Q 228 (305)
T ss_pred chHHHHHHHHhcCC------CCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcC-C
Confidence 34556666665441 2222222333445555544210 134577899999999988 6
Q ss_pred C--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHH
Q 010637 216 S--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 216 ~--~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~a 289 (505)
+ .+.+.+.+......... .-.++..++...+ ...+|.+.. ..++.|+++|+|+|.....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~-~~sSM~qD~~~gR-----~tEid~i~G---------~vvr~a~~~Gv~~P~~~~l 289 (305)
T PRK05708 229 PAAAANLHEEVQRVIQATAA-NYSSMYQDVRAGR-----RTEISYLLG---------YACRAADRHGLPLPRLQHL 289 (305)
T ss_pred CccHHHHHHHHHHHHHhccC-CCcHHHHHHHcCC-----ceeehhhhh---------HHHHHHHHcCCCCchHHHH
Confidence 5 33343333221111111 1233344554432 246777765 4789999999999988753
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-12 Score=116.24 Aligned_cols=99 Identities=17% Similarity=0.319 Sum_probs=82.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCC-------CeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL-------PLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~-------~i~~~~s~~e~v~~l~~advIil~v 80 (505)
||+|||.|.||.++|..|+++||+|++|.|+++.++.+.+.+.+...+ ++..+++++++++. +|+||++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~---ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED---ADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT----SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc---ccEEEecc
Confidence 699999999999999999999999999999999999888765421101 57788999999887 99999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
|.. ..+++++.+.++++++.+||.++.+.
T Consensus 78 Ps~-~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PSQ-AHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -GG-GHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cHH-HHHHHHHHHhhccCCCCEEEEecCCc
Confidence 995 78999999999999999999988776
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.9e-12 Score=110.33 Aligned_cols=104 Identities=20% Similarity=0.295 Sum_probs=87.4
Q ss_pred cchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhh-ccccccCCCchhHHHHH
Q 010637 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI-FKVKDEYGEGELVDKIL 260 (505)
Q Consensus 182 G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~i-l~~~~~~~~~~~l~~i~ 260 (505)
|+|+.+|+++|.+.++.+.+++|++.++++.| +|++.+.+++ +.+.+.|+.++...+. +.. ++|.+.|.++.+.
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~G-ld~~~~~~vl---~~~~~~s~~~~~~~~~~~~~-~~~~~~f~l~~~~ 75 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAG-LDPEQLLDVL---SAGSGGSWMLKNRAPRMILN-GDFDPGFSLDLAR 75 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHH---HTSTTHBHHHHHHHHHHHHT-TTTCSSSBHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH---ccCCcCchHHHhhhhhhhhc-ccCCccchhHhhc
Confidence 78999999999999999999999999999999 9999999998 5788899999988763 433 6788999999999
Q ss_pred hhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 261 DKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 261 ~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
||+. .+.+.|.+.|+|+|+...+ ...|..+
T Consensus 76 KDl~------l~~~~a~~~g~~~p~~~~~-~~~~~~a 105 (122)
T PF14833_consen 76 KDLR------LALDLAKEAGVPLPLGSAA-RQLYQAA 105 (122)
T ss_dssp HHHH------HHHHHHHHTT---HHHHHH-HHHHHHH
T ss_pred cHHH------HHHHHHHHcCCCCHHHHHH-HHHHHHH
Confidence 9996 9999999999999999865 4555443
|
... |
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-11 Score=135.84 Aligned_cols=162 Identities=14% Similarity=0.166 Sum_probs=121.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|||+|.||.++++.|.++| ++|.+||+++++.+.+.+.+.. .....+..++++. +|+||+++|..
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~-----~~~~~~~~~~~~~---aDvVilavp~~ 74 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVI-----DRGEEDLAEAVSG---ADVIVLAVPVL 74 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCC-----CcccCCHHHHhcC---CCEEEECCCHH
Confidence 468999999999999999999999 4899999999987776654321 1134566666665 99999999985
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCHH-H-------hhcCC--ccc--cCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEE-G-------ARHGP--SLM--PGG 150 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~~-~-------a~~G~--~im--~gg 150 (505)
.+.++++.+.+.++++.+|+|+++........+.+.+....++|+. .|++|++. + ...+. .+. .++
T Consensus 75 -~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 75 -AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 7899999999988899999999998766666666655444667765 58876653 1 11232 223 336
Q ss_pred CHHHHHHHHHHHHHHhcccCCCCceEEeCCCc
Q 010637 151 SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGG 182 (505)
Q Consensus 151 ~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G 182 (505)
+++.++.++++|+.+| ..++++.+.-
T Consensus 154 ~~~~~~~~~~l~~~~G------~~~~~~~~~~ 179 (735)
T PRK14806 154 DPAALARVDRLWRAVG------ADVLHMDVAH 179 (735)
T ss_pred CHHHHHHHHHHHHHcC------CEEEEcCHHH
Confidence 7888999999999999 5677776543
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.4e-12 Score=135.32 Aligned_cols=118 Identities=17% Similarity=0.329 Sum_probs=100.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---hcCCCceecccHHHHHHHHhcCC-CCCCCc
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARI---WKGGCIIRAVFLDRIKKAYQRNP-NLASLV 401 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~i---W~~Gciirs~lL~~i~~~~~~~~-~~~~ll 401 (505)
+.+|++||+||+|+|+.|++++|+|.+++++. ++|.+++.++ |+.| ..+|++++....++..++ ..+..+
T Consensus 182 GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~-----Gld~~~l~~vf~~~~~g-~~~S~llei~~~~l~~~d~~~~~f~ 255 (493)
T PLN02350 182 GAGNFVKMVHNGIEYGDMQLISEAYDVLKSVG-----GLSNEELAEVFAEWNKG-ELESFLIEITADIFSVKDDKGDGYL 255 (493)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHcCC-CccchHHHHHHHHHhhcCCCCCCch
Confidence 57999999999999999999999999999642 3898888877 9998 689999999888876553 223567
Q ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCChhh
Q 010637 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLPA 451 (505)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~~a 451 (505)
+|...++..+|+|| ||+++.|.+.|+|+|.|++++. |.++++.+|..+
T Consensus 256 l~~i~Kd~~~kGTg--~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~ 305 (493)
T PLN02350 256 VDKILDKTGMKGTG--KWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAA 305 (493)
T ss_pred HHHHHhhhcccchH--HHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHH
Confidence 77778888889999 9999999999999999999998 788888776553
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.7e-11 Score=119.94 Aligned_cols=198 Identities=13% Similarity=0.063 Sum_probs=126.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.||.++|++|.+.|++|.+++++.++........ ++... +++++++. +|+|+++||+. .
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~------G~~~~-s~~eaa~~---ADVVvLaVPd~-~ 85 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEAD------GFEVL-TVAEAAKW---ADVIMILLPDE-V 85 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHC------CCeeC-CHHHHHhc---CCEEEEcCCHH-H
Confidence 35799999999999999999999999999988866544443321 24443 88888887 99999999986 5
Q ss_pred HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCHHH-----hhcCC-ccc-cCCC--HHH
Q 010637 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEG-----ARHGP-SLM-PGGS--FEA 154 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~~~-----a~~G~-~im-~gg~--~ea 154 (505)
...++ +++.+.+++|.+|+.+....... .......++..+- +|-..+..- ...|. .++ +..+ .++
T Consensus 86 ~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~----~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a 161 (330)
T PRK05479 86 QAEVYEEEIEPNLKEGAALAFAHGFNIHF----GQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNA 161 (330)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCChhh----ceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHH
Confidence 58888 78999999999886665532211 1121223443333 454433311 12344 444 5555 788
Q ss_pred HHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHH
Q 010637 155 YNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELA 221 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~ 221 (505)
.+.+..++..+|+...+--...+-.+..+.-|=- +..+..+...++..++.++.+.| .+|+...
T Consensus 162 ~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~ge--q~vl~gg~~~l~~~~~e~l~eaG-~~pe~Ay 225 (330)
T PRK05479 162 KDLALAYAKGIGGTRAGVIETTFKEETETDLFGE--QAVLCGGLTELIKAGFETLVEAG-YQPEMAY 225 (330)
T ss_pred HHHHHHHHHHcCCCccceeeeeecccccccchhh--HHHHhhHHHHHHHHHHHHHHHcC-CCHHHHH
Confidence 9999999999995421100001111110111100 11233456677888899999999 9998653
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=116.71 Aligned_cols=254 Identities=16% Similarity=0.175 Sum_probs=157.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccC-CCC-----eeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG-QLP-----LTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g-~~~-----i~~~~s~~e~v~~l~~advIil~v 80 (505)
|||.|+|+|.||+-++..|+++|++|.++.|++. ++++.+.+..-- ..+ ...+.+.+ .+..+|+||++|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~----~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAE----ALGPADLVIVTV 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChh----hcCCCCEEEEEe
Confidence 6899999999999999999999999999999876 788887653200 001 01111122 223499999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCC--CHHHhhcCC---ccccCCC
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSG--GEEGARHGP---SLMPGGS 151 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsG--g~~~a~~G~---~im~gg~ 151 (505)
++. ++++++..+.+.+.+.+.|+-.-|+..... .+.+..... |+.+.++--.| ...-+..|. ..+.|+.
T Consensus 76 Ka~-q~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~ 153 (307)
T COG1893 76 KAY-QLEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGR 153 (307)
T ss_pred ccc-cHHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCc
Confidence 996 799999999999999999998888875443 555554443 23333322111 111111233 2344556
Q ss_pred HHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhh---------------------hHHHhHhhHHHHHHHHHH
Q 010637 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN---------------------GIEYGDMQLISEAYDVLK 210 (505)
Q Consensus 152 ~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N---------------------~i~~~~~~~i~Ea~~l~~ 210 (505)
++.++.+.++|+.-+. .+.+..+.-...+.|++-| ........++.|...++.
T Consensus 154 ~~~~~~i~~~~~~a~~------~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~ 227 (307)
T COG1893 154 DELVKALAELFKEAGL------EVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVAR 227 (307)
T ss_pred hHHHHHHHHHHHhCCC------CeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHH
Confidence 6778888888877663 3333333344444555444 233445678899999999
Q ss_pred HhC-CCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHH
Q 010637 211 HVG-GLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 211 ~~g-~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
+.| .++.+.+.+++........ ....++..++...+ .-.+|.|... .++.|+++|+++|++..
T Consensus 228 ~~g~~~~~~~~~~v~~~~~~~~~-~~~sSM~qDl~~gr-----~tEid~i~G~---------vv~~a~~~gi~~P~~~~ 291 (307)
T COG1893 228 AEGVELPEEVVERVLAVIRATDA-ENYSSMLQDLEKGR-----PTEIDAINGA---------VVRLAKKHGLATPVNDT 291 (307)
T ss_pred hccCCCCHHHHHHHHHHHHhccc-ccCchHHHHHHcCC-----cccHHHHhhH---------HHHHHHHhCCCCcHHHH
Confidence 887 2344334444432222211 11223333443321 2467887653 68999999999999874
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=128.91 Aligned_cols=160 Identities=10% Similarity=0.134 Sum_probs=111.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.||..+|..|.+.|++|.+|||+... +...+. ++..+.++++++.. .+|+||+|||.. .
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~-------Gv~~~~d~~e~~~~--~aDvViLavP~~-~ 120 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSL-------GVSFFLDPHDLCER--HPDVILLCTSII-S 120 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHc-------CCEEeCCHHHHhhc--CCCEEEEcCCHH-H
Confidence 468999999999999999999999999999998554 322222 35567788886531 289999999984 7
Q ss_pred HHHHHHHHH-hcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHHH--hhcCC-cccc----CCCH---H
Q 010637 86 VDQTIAALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEG--ARHGP-SLMP----GGSF---E 153 (505)
Q Consensus 86 v~~vl~~l~-~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~~--a~~G~-~im~----gg~~---e 153 (505)
+..+++++. +.++++.+|+|++++.....+.+...+ ..+..|++. |+.|.+.. ...+. .++. +.+. +
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l-~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~ 199 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYL-PEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVS 199 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhc-CCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHH
Confidence 899998886 678899999999987643333333333 336778875 77776521 12222 2233 2222 3
Q ss_pred HHHHHHHHHHHHhcccCCCCceEEeCCCcc
Q 010637 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGS 183 (505)
Q Consensus 154 a~~~v~~ll~~iga~~~~~~~v~~vG~~G~ 183 (505)
.++.++++++.+| .+++.+.+...
T Consensus 200 ~~~~l~~l~~~lG------a~v~~ms~eeH 223 (667)
T PLN02712 200 RCKSFLEVFEREG------CKMVEMSCTEH 223 (667)
T ss_pred HHHHHHHHHHHcC------CEEEEeCHHHH
Confidence 4566779999999 45677765433
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.4e-10 Score=110.83 Aligned_cols=185 Identities=12% Similarity=0.104 Sum_probs=118.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|||+|||+|.||.+|+..|.++|. +|++++|++++. .+....++.++++. +|+||+|+|+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~---~D~Vilavkp 67 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-------------PFVYLQSNEELAKT---CDIIVLAVKP 67 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-------------CeEEeCChHHHHHh---CCEEEEEeCH
Confidence 589999999999999999999873 499999987541 13456788888776 9999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC--CCeEEeCCCCCCHHHhhcCC-ccccC--CCHHHHHH
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLGMGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~i~~pvsGg~~~a~~G~-~im~g--g~~ea~~~ 157 (505)
..+++++.++.+.+.++.+|.++++..... +.+.+... .++++ | +.+.....|. .+.++ .+++..+.
T Consensus 68 -~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~---l~~~~~~~~~vvr~m--P--n~p~~~g~g~t~i~~~~~~~~~~~~~ 139 (260)
T PTZ00431 68 -DLAGKVLLEIKPYLGSKLLISICGGLNLKT---LEEMVGVEAKIVRVM--P--NTPSLVGQGSLVFCANNNVDSTDKKK 139 (260)
T ss_pred -HHHHHHHHHHHhhccCCEEEEEeCCccHHH---HHHHcCCCCeEEEEC--C--CchhHhcceeEEEEeCCCCCHHHHHH
Confidence 489999999999887655555555554322 22222211 12222 2 1223334555 33332 25677889
Q ss_pred HHHHHHHHhcccCCCCceEEeCCCcc--hhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010637 158 IRDILQKVAAQVDDGPCVTYIGEGGS--GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDE 226 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~vG~~G~--g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~ 226 (505)
++.+|+.+| .++++.+..- ...+--+-.++.+.++..+.++ +.+.| ++.++..++..+
T Consensus 140 v~~l~~~~G-------~~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~G-l~~~~a~~l~~~ 199 (260)
T PTZ00431 140 VIDIFSACG-------IIQEIKEKDMDIATAISGCGPAYVFLFIESLIDA---GVKNG-LNRDVSKNLVLQ 199 (260)
T ss_pred HHHHHHhCC-------cEEEEChHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 999999999 3445543211 1111111133444555555555 45667 999999888744
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.6e-11 Score=120.94 Aligned_cols=153 Identities=10% Similarity=0.095 Sum_probs=113.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.++|+|||+ |.||..+|+.|.+. |++|++||++.+ ...++++.+.+ +|+||+|+|..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------------------~~~~~~~~v~~---aDlVilavPv~ 62 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------------------GSLDPATLLQR---ADVLIFSAPIR 62 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------------------ccCCHHHHhcC---CCEEEEeCCHH
Confidence 468999999 99999999999964 899999998511 13466777766 99999999995
Q ss_pred chHHHHHHHHHhc---CCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHH-HhhcCC-ccc-cCCCHHHHH
Q 010637 84 SPVDQTIAALSEH---MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEE-GARHGP-SLM-PGGSFEAYN 156 (505)
Q Consensus 84 ~~v~~vl~~l~~~---l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~-~a~~G~-~im-~gg~~ea~~ 156 (505)
.+.+++.++.+. ++++.+|+|.+++...-.... ...+..|++. |+.|.+. +...|. .++ ++...+..+
T Consensus 63 -~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~ 137 (370)
T PRK08818 63 -HTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM----LASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSP 137 (370)
T ss_pred -HHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH----HhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHH
Confidence 788899998875 789999999999874333332 3345679986 7777653 334555 443 455556678
Q ss_pred HHHHHHHHHhcccCCCCceEEeCCCcchhhhhhH
Q 010637 157 NIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMV 190 (505)
Q Consensus 157 ~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v 190 (505)
.++.+++.+| ..++.+.+...-..+-.+
T Consensus 138 ~v~~l~~~~G------a~v~~~~aeeHD~~~A~v 165 (370)
T PRK08818 138 WVQSLCSALQ------AECVYATPEHHDRVMALV 165 (370)
T ss_pred HHHHHHHHcC------CEEEEcCHHHHHHHHHHH
Confidence 8999999999 567787765544455444
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-11 Score=113.11 Aligned_cols=195 Identities=14% Similarity=0.176 Sum_probs=133.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc-------ccC------C---C------CeeeeCCH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REG------Q---L------PLTGHYTP 63 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~-------~~g------~---~------~i~~~~s~ 63 (505)
+..|+|||.|.||++||+.-+..|++|.++|++++.+.+..+... .++ . + +++.+++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv 90 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNV 90 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCH
Confidence 457999999999999999999999999999999987655433110 000 0 0 34556667
Q ss_pred HHHHhhcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH----CCCeEEeC-CCCCCH
Q 010637 64 RDFVLSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGM-GVSGGE 137 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~-pvsGg~ 137 (505)
.+++.. +|+||.++-+...++.-+ ..|-...++..+++.. |++..-+ +++..++. .|.||+.+ ||.--.
T Consensus 91 ~~~v~d---adliiEAivEn~diK~~lF~~l~~~ak~~~il~tN-TSSl~lt-~ia~~~~~~srf~GlHFfNPvPvMKLv 165 (298)
T KOG2304|consen 91 SDAVSD---ADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATN-TSSLSLT-DIASATQRPSRFAGLHFFNPVPVMKLV 165 (298)
T ss_pred HHhhhh---hHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeec-ccceeHH-HHHhhccChhhhceeeccCCchhHHHh
Confidence 777766 899998887776665544 4555545555555544 4433332 33333332 28899885 666555
Q ss_pred HHhhcCCccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCH
Q 010637 138 EGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 138 ~~a~~G~~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
+..+. .-.+++.+..+..+-+.+| +..+-+-+ -.|..| |.+ .+-.+.|++++.+++- .+.
T Consensus 166 EVir~-----~~TS~eTf~~l~~f~k~~g------KttVackD-tpGFIV----NRl---LiPyl~ea~r~yerGd-Ask 225 (298)
T KOG2304|consen 166 EVIRT-----DDTSDETFNALVDFGKAVG------KTTVACKD-TPGFIV----NRL---LIPYLMEAIRMYERGD-ASK 225 (298)
T ss_pred hhhcC-----CCCCHHHHHHHHHHHHHhC------CCceeecC-CCchhh----hHH---HHHHHHHHHHHHHhcC-CcH
Confidence 54333 2347889999999999999 66666644 555554 444 5677799999999988 999
Q ss_pred HHHHHHHH
Q 010637 218 AELAEIFD 225 (505)
Q Consensus 218 ~~i~~v~~ 225 (505)
++|+..++
T Consensus 226 eDIDtaMk 233 (298)
T KOG2304|consen 226 EDIDTAMK 233 (298)
T ss_pred hhHHHHHh
Confidence 99999985
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-12 Score=110.10 Aligned_cols=110 Identities=16% Similarity=0.265 Sum_probs=74.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEE-EeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v-~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+||+|||.|++|..|++.|.++||+|.. |+|+++..+++..... -..+.++.|+++. +|++|++||++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~------~~~~~~~~~~~~~---aDlv~iavpDd- 79 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG------AGAILDLEEILRD---ADLVFIAVPDD- 79 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T------T-----TTGGGCC----SEEEE-S-CC-
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc------ccccccccccccc---CCEEEEEechH-
Confidence 46899999999999999999999999875 5899888777765432 1234466666665 99999999997
Q ss_pred hHHHHHHHHHhc--CCCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 85 PVDQTIAALSEH--MSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 85 ~v~~vl~~l~~~--l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
.+..+.++|... ..+|++|++||.....+.. +-++++|...
T Consensus 80 aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL---~p~~~~Ga~~ 122 (127)
T PF10727_consen 80 AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVL---APARERGAIV 122 (127)
T ss_dssp HHHHHHHHHHCC--S-TT-EEEES-SS--GGGG---HHHHHTT-EE
T ss_pred HHHHHHHHHHHhccCCCCcEEEECCCCChHHhh---hhHHHCCCeE
Confidence 899999999987 7899999999998765543 3455566543
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-09 Score=100.80 Aligned_cols=139 Identities=19% Similarity=0.227 Sum_probs=95.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|+|+|+|.||..+|++|.+.|++|.++|+++++++.+.+.. +....++ +++... .+|+++-|...+...
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~------g~~~v~~-~~l~~~--~~Dv~vp~A~~~~I~ 99 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELF------GATVVAP-EEIYSV--DADVFAPCALGGVIN 99 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc------CCEEEcc-hhhccc--cCCEEEecccccccC
Confidence 5799999999999999999999999999999999888877642 1233333 444432 389998776554333
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCC-CCCHHHhhcCCccccCCCH-HHHHHHHHHHH
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGV-SGGEEGARHGPSLMPGGSF-EAYNNIRDILQ 163 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pv-sGg~~~a~~G~~im~gg~~-ea~~~v~~ll~ 163 (505)
++.++ .+ +.++|++.+|....+ .+..+.++++|+.|++ ... +||. ..+...|+++.+ ++.++++++++
T Consensus 100 ~~~~~----~l-~~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~Pd~~~NaGGv---~~~~~e~~~~~~~~~~~~~~~~~~ 170 (200)
T cd01075 100 DDTIP----QL-KAKAIAGAANNQLAD-PRHGQMLHERGILYAPDYVVNAGGL---INVADELYGGNEARVLAKVEAIYD 170 (200)
T ss_pred HHHHH----Hc-CCCEEEECCcCccCC-HhHHHHHHHCCCEEeCceeeeCcCc---eeehhHHhCCcHHHHHHHHHHHHH
Confidence 33333 34 468999999987654 6788889999999987 444 5533 233345566553 44444444433
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-09 Score=111.72 Aligned_cols=111 Identities=13% Similarity=0.147 Sum_probs=94.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|.+|.+|||++...+..... +++...+++++++. +|+|++++|.....
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 262 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL-------GLTYHVSFDSLVSV---CDVVTIHCPLHPET 262 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc-------CceecCCHHHHhhc---CCEEEEcCCCCHHH
Confidence 579999999999999999999999999999986432222221 24556789999887 99999999999999
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCe
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+.++ ++.+..+++|.++|+++.+...+...+.+.+.+..+.
T Consensus 263 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 263 EHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred HHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence 9998 5788889999999999999999999999999876554
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=111.60 Aligned_cols=117 Identities=18% Similarity=0.200 Sum_probs=95.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|..|...|++|.+||++++....+ +....+++++++. +|+|++++|...+.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~-----------~~~~~~l~ell~~---aDiVil~lP~t~~t 212 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF-----------LTYKDSVKEAIKD---ADIISLHVPANKES 212 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh-----------hhccCCHHHHHhc---CCEEEEeCCCcHHH
Confidence 579999999999999999999999999999998653321 1234688888887 99999999998777
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
..++ +++.+.+++|.++|+++.+...+...+.+.+.+..+.....-|.-.+
T Consensus 213 ~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~E 264 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENE 264 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCC
Confidence 7777 67888899999999999999999999999998765544444444333
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-09 Score=109.90 Aligned_cols=113 Identities=11% Similarity=0.043 Sum_probs=94.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|..-|.+|.+||++....+...+. ++....++++++.. +|+|++++|.....
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~-------g~~~~~~l~ell~~---sDvV~l~lPlt~~T 269 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKET-------GAKFEEDLDAMLPK---CDVVVINTPLTEKT 269 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhc-------CceecCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 579999999999999999999999999999986433322222 24556789999987 99999999999999
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
+.++ .+++..+++|.++|+++.+...+...+.+.+++..+...
T Consensus 270 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GA 313 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGY 313 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEE
Confidence 9998 578888999999999999999999999999987655433
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-08 Score=102.76 Aligned_cols=243 Identities=18% Similarity=0.206 Sum_probs=140.4
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc----cCCC---CeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHHH
Q 010637 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR----EGQL---PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQT 89 (505)
Q Consensus 17 MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~----~g~~---~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~v 89 (505)
||..+|..|+++|++|++++|+ ++.+.+.+.+.. .+.. .+...+++++ +..+|+||++|+.. +++++
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~----~~~~D~iiv~vKs~-~~~~~ 75 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE----LPPADLVIITVKAY-QTEEA 75 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh----cCCCCEEEEeccch-hHHHH
Confidence 7999999999999999999997 667777654421 0000 0111223333 23489999999996 78999
Q ss_pred HHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCHHHhhcCC-ccccCCC---HHHHHHHHHH
Q 010637 90 IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGGS---FEAYNNIRDI 161 (505)
Q Consensus 90 l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~~~a~~G~-~im~gg~---~ea~~~v~~l 161 (505)
++.+.+.+.++.+|+...|+... .+.+.+.+... |+.++++-..+.......+. .+..|.. .+..+.+..+
T Consensus 76 l~~l~~~l~~~~~iv~~qNG~g~-~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~ 154 (293)
T TIGR00745 76 AALLLPLIGKNTKVLFLQNGLGH-EERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAEL 154 (293)
T ss_pred HHHhHhhcCCCCEEEEccCCCCC-HHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHH
Confidence 99999999999999999888643 23444444322 22222222222111111122 2333332 2444566666
Q ss_pred HHHHhcccCCCCceEEeCCCcchhhhhhHhhh---------------------HHHhHhhHHHHHHHHHHHhCCCC--HH
Q 010637 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG---------------------IEYGDMQLISEAYDVLKHVGGLS--NA 218 (505)
Q Consensus 162 l~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~---------------------i~~~~~~~i~Ea~~l~~~~g~l~--~~ 218 (505)
|+..+ ..+....+.-...+.|++.|. .......++.|+..++++.| ++ .+
T Consensus 155 l~~~~------~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G-~~~~~~ 227 (293)
T TIGR00745 155 LNEAG------IPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEG-VDLPDD 227 (293)
T ss_pred HHhCC------CCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCC-CCCCHH
Confidence 76655 223333333334444444332 23445677899999999987 65 44
Q ss_pred HHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHH
Q 010637 219 ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 219 ~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
.+.+.+.........+ ..++..++...+ ...+|.+.. +.++.|+++|+|+|....
T Consensus 228 ~~~~~~~~~~~~~~~~-~sSm~~D~~~gr-----~tEid~i~G---------~~v~~a~~~gv~~P~~~~ 282 (293)
T TIGR00745 228 EVEELVRAVIRMTAEN-TSSMLQDLLRGR-----RTEIDAING---------AVVRLAEKLGIDAPVNRT 282 (293)
T ss_pred HHHHHHHHHHhcCCCC-CChHHHHHHcCC-----cchHHHhcc---------HHHHHHHHcCCCCChHHH
Confidence 4445444332211111 122333444322 136677664 578999999999998875
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.7e-09 Score=105.93 Aligned_cols=145 Identities=12% Similarity=0.088 Sum_probs=96.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC-hHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRT-TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~-~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|||||+|.||.++|++|.+.|++|.++++. +++.+.+.+. ++.. .++.++++. +|+|+++||+..+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~-------Gv~~-~s~~ea~~~---ADiVvLaVpp~~~ 72 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATED-------GFKV-GTVEEAIPQ---ADLIMNLLPDEVQ 72 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHC-------CCEE-CCHHHHHhc---CCEEEEeCCcHhH
Confidence 57999999999999999999999998876554 3445554433 2444 457887776 9999999998646
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE-eCCCCCCHHH-----hhcCC-ccc-cC--CCHHHH
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEG-----ARHGP-SLM-PG--GSFEAY 155 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsGg~~~-----a~~G~-~im-~g--g~~ea~ 155 (505)
...+.+++.+.++++. +|..+.+.. .......+. .++..+ -+|-..+... ...|. +++ ++ -+.+..
T Consensus 73 ~~~v~~ei~~~l~~g~-iVs~aaG~~--i~~~~~~~~-~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~ 148 (314)
T TIGR00465 73 HEVYEAEIQPLLKEGK-TLGFSHGFN--IHFVQIVPP-KDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAM 148 (314)
T ss_pred HHHHHHHHHhhCCCCc-EEEEeCCcc--HhhccccCC-CCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHH
Confidence 6766778989888776 555555543 222233332 233333 4564443310 02444 443 33 366788
Q ss_pred HHHHHHHHHHh
Q 010637 156 NNIRDILQKVA 166 (505)
Q Consensus 156 ~~v~~ll~~ig 166 (505)
+.+..+++.+|
T Consensus 149 ~~~~~~~~~iG 159 (314)
T TIGR00465 149 AIALAYAKAIG 159 (314)
T ss_pred HHHHHHHHHcC
Confidence 89999999999
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.3e-09 Score=97.26 Aligned_cols=203 Identities=15% Similarity=0.260 Sum_probs=132.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH-----------hhcccCCC-------CeeeeCCHHHHHh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-----------RAHREGQL-------PLTGHYTPRDFVL 68 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~-----------~~~~~g~~-------~i~~~~s~~e~v~ 68 (505)
.||||+|.|.+|+..|..++..||+|.+||..++.+....+ .+...|++ .+.+++++.|+++
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk 83 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVK 83 (313)
T ss_pred cceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHh
Confidence 58999999999999999999999999999999876543222 22222222 3567889999999
Q ss_pred hcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC--c
Q 010637 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP--S 145 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~--~ 145 (505)
. +=.|-.|+|++-.++.-+ .+|-..+.+ .+|+..||+.+..+.-.+....... -.+.-||-... .-| -
T Consensus 84 ~---Ai~iQEcvpE~L~lkk~ly~qlD~i~d~-~tIlaSSTSt~mpS~~s~gL~~k~q-~lvaHPvNPPy----fiPLvE 154 (313)
T KOG2305|consen 84 G---AIHIQECVPEDLNLKKQLYKQLDEIADP-TTILASSTSTFMPSKFSAGLINKEQ-CLVAHPVNPPY----FIPLVE 154 (313)
T ss_pred h---hhhHHhhchHhhHHHHHHHHHHHHhcCC-ceEEeccccccChHHHhhhhhhhhh-eeEecCCCCCc----ccchhe
Confidence 7 778888999987777665 445454544 5555666665444433332222222 23333332110 011 1
Q ss_pred cc--cCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHH
Q 010637 146 LM--PGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223 (505)
Q Consensus 146 im--~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v 223 (505)
++ +=.+++.+++.+.+++.+|. .++....+-.|. +.|.+.|++. +|.+.|...++ ++..+++.+
T Consensus 155 lVPaPwTsp~tVdrt~~lM~sigq------~pV~l~rei~Gf----~lnriq~Ail---ne~wrLvasGi-l~v~dvD~V 220 (313)
T KOG2305|consen 155 LVPAPWTSPDTVDRTRALMRSIGQ------EPVTLKREILGF----ALNRIQYAIL---NETWRLVASGI-LNVNDVDAV 220 (313)
T ss_pred eccCCCCChhHHHHHHHHHHHhCC------CCcccccccccc----eeccccHHHH---HHHHHHHHccC-cchhhHHHH
Confidence 22 23578999999999999994 333333323333 4477777665 99999999887 999999988
Q ss_pred HHHhccCCcchh
Q 010637 224 FDEWNKGELESF 235 (505)
Q Consensus 224 ~~~~~~g~~~s~ 235 (505)
+. .|-+..|
T Consensus 221 mS---~GLG~RY 229 (313)
T KOG2305|consen 221 MS---AGLGPRY 229 (313)
T ss_pred Hh---cCCCcch
Confidence 73 4544433
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.2e-09 Score=108.05 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=94.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+.|...|++|.+|||++.... .... ++. ..+++++++. +|+|++++|.....
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~-------~~~-~~~l~ell~~---aDiV~l~lP~t~~T 218 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKEL-------GAE-YRPLEELLRE---SDFVSLHVPLTKET 218 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHc-------CCE-ecCHHHHHhh---CCEEEEeCCCChHH
Confidence 5799999999999999999999999999999875432 1111 122 3588898887 99999999998888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (505)
+.++ .+....+++|.++|++|.+...+...+.+.+.+..+.....-|+
T Consensus 219 ~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~ 267 (333)
T PRK13243 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVF 267 (333)
T ss_pred hhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccC
Confidence 8888 67888899999999999999999999999998765543333343
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=100.68 Aligned_cols=153 Identities=18% Similarity=0.273 Sum_probs=101.7
Q ss_pred HHHHHHhCC--CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCC
Q 010637 21 LALNVAEKG--FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMS 98 (505)
Q Consensus 21 lA~~La~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~ 98 (505)
+|+.|.++| ++|++||++++..+...+.+.. -....+ .+.+.. +|+||+|+|.. .+.+++.++.++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~-----~~~~~~-~~~~~~---~DlvvlavP~~-~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGII-----DEASTD-IEAVED---ADLVVLAVPVS-AIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSS-----SEEESH-HHHGGC---CSEEEE-S-HH-HHHHHHHHHHCGS-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCe-----eeccCC-HhHhcC---CCEEEEcCCHH-HHHHHHHHhhhhcC
Confidence 688899999 7899999999988777666542 123333 455665 99999999995 78999999999999
Q ss_pred CCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCH----H----HhhcCC--ccccCC--CHHHHHHHHHHHHHH
Q 010637 99 PGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGE----E----GARHGP--SLMPGG--SFEAYNNIRDILQKV 165 (505)
Q Consensus 99 ~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~----~----~a~~G~--~im~gg--~~ea~~~v~~ll~~i 165 (505)
+|.+|+|.+++.-.......+.+. .+..|++. |+.|.+ . .-..|. .+.++. +++.++.++.+++.+
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~ 149 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEAL 149 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHC
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHC
Confidence 999999999998766666665555 67889986 666662 2 222444 333343 567899999999999
Q ss_pred hcccCCCCceEEeCCCcchhhhhhH
Q 010637 166 AAQVDDGPCVTYIGEGGSGNFVKMV 190 (505)
Q Consensus 166 ga~~~~~~~v~~vG~~G~g~~vK~v 190 (505)
| .+++.+.+.-.-..+-++
T Consensus 150 G------a~~~~~~~eeHD~~~A~v 168 (258)
T PF02153_consen 150 G------ARVVEMDAEEHDRIMAYV 168 (258)
T ss_dssp T-------EEEE--HHHHHHHHHHH
T ss_pred C------CEEEEcCHHHHHHHHHHH
Confidence 9 467777654333333333
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-09 Score=97.16 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=85.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|+|||+|.||..++..|++.| ++|.++||++++.+++.+...... -.....+..++++. +|+||.++|.+.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~Dvvi~~~~~~~ 93 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG--IAIAYLDLEELLAE---ADLIINTTPVGM 93 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc--cceeecchhhcccc---CCEEEeCcCCCC
Confidence 357999999999999999999996 889999999998888776532100 00234566666555 999999999975
Q ss_pred h-HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 85 P-VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~-v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
. ++.+... ...++++.+++|+++..+ .+ .+.+.+++.|++|++.
T Consensus 94 ~~~~~~~~~-~~~~~~~~~v~D~~~~~~-~~-~l~~~~~~~g~~~v~g 138 (155)
T cd01065 94 KPGDELPLP-PSLLKPGGVVYDVVYNPL-ET-PLLKEARALGAKTIDG 138 (155)
T ss_pred CCCCCCCCC-HHHcCCCCEEEEcCcCCC-CC-HHHHHHHHCCCceeCC
Confidence 4 2332211 123678999999988744 44 7778888888887653
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.8e-09 Score=106.54 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=89.0
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La-~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|||||+|.||+.+|++|+ ..|.+|.+||+++.... .. .+....+++++++. +|+|++++|....
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~-------~~~~~~~l~ell~~---aDvIvl~lP~t~~ 213 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---AT-------YVDYKDTIEEAVEG---ADIVTLHMPATKY 213 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---Hh-------hccccCCHHHHHHh---CCEEEEeCCCCcc
Confidence 57999999999999999994 46889999999875421 11 13345689999887 9999999999877
Q ss_pred HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
.+.++ .++.+.+++|.++|++|.+...++..+.+.+.+..+..
T Consensus 214 t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g 257 (332)
T PRK08605 214 NHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKG 257 (332)
T ss_pred hhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeE
Confidence 77665 56778899999999999999999999999998765543
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-09 Score=106.71 Aligned_cols=117 Identities=17% Similarity=0.253 Sum_probs=93.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+||+++.+...+. ......++++++.. +|+|++++|...+.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~---------~~~~~~~l~e~l~~---aDvvv~~lPlt~~T 204 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQ---------SFAGREELSAFLSQ---TRVLINLLPNTPET 204 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCce---------eecccccHHHHHhc---CCEEEECCCCCHHH
Confidence 5799999999999999999999999999999765421111 01123577788877 99999999999999
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
+.++ .+.+..+++|.++|+++-+..-+...+.+.|.+..+.....-|+-
T Consensus 205 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~ 254 (312)
T PRK15469 205 VGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFS 254 (312)
T ss_pred HHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCC
Confidence 9888 467888999999999999999999999999988655443333443
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.5e-09 Score=105.04 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=92.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+.|..-|++|.+|||+... .+. .....+++++++. +|+|++++|...+.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~------~~~~~~l~ell~~---aDiv~~~lp~t~~T 187 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGI------SSIYMEPEDIMKK---SDFVLISLPLTDET 187 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCc------ccccCCHHHHHhh---CCEEEECCCCCchh
Confidence 57999999999999999888889999999998432 111 0124689998877 99999999999888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg 136 (505)
+.++ .+.+..+++|.++|++|.+...++..+.+.+.+..+.....-|.-.
T Consensus 188 ~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~ 238 (303)
T PRK06436 188 RGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWN 238 (303)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCC
Confidence 8888 5677889999999999999999999999999876454433334433
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.3e-09 Score=96.86 Aligned_cols=111 Identities=12% Similarity=0.210 Sum_probs=90.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.|..-|.+|.+|||+.......... .+ ...+++++.+. +|+|++++|.....
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~-------~~-~~~~l~ell~~---aDiv~~~~plt~~T 105 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEF-------GV-EYVSLDELLAQ---ADIVSLHLPLTPET 105 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHT-------TE-EESSHHHHHHH----SEEEE-SSSSTTT
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccc-------cc-eeeehhhhcch---hhhhhhhhcccccc
Confidence 579999999999999999999999999999998865533332 23 45699999998 99999999987777
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+++..+..
T Consensus 106 ~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~g 148 (178)
T PF02826_consen 106 RGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAG 148 (178)
T ss_dssp TTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEE
T ss_pred ceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCce
Confidence 7777 67778899999999999999989999999988765443
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=101.90 Aligned_cols=88 Identities=15% Similarity=0.231 Sum_probs=70.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||.++|++|...|++|.+|+|.....+.....+ +.. .+++++++. +|+|++++|+. ..
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G-------~~v-~sl~Eaak~---ADVV~llLPd~-~t 84 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADG-------FEV-MSVSEAVRT---AQVVQMLLPDE-QQ 84 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcC-------CEE-CCHHHHHhc---CCEEEEeCCCh-HH
Confidence 5799999999999999999999999999997644433333222 343 489999987 99999999985 45
Q ss_pred HHHH-HHHHhcCCCCcEEEec
Q 010637 87 DQTI-AALSEHMSPGDCIIDG 106 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~ 106 (505)
+.++ +++.+.+++|.+++-.
T Consensus 85 ~~V~~~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 85 AHVYKAEVEENLREGQMLLFS 105 (335)
T ss_pred HHHHHHHHHhcCCCCCEEEEC
Confidence 7777 5799999999977653
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-08 Score=99.70 Aligned_cols=125 Identities=19% Similarity=0.198 Sum_probs=89.6
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
|+...++||||||+|.||..++.+|.+. +++|. +|||++++.+++.+.... ...+.+++++.+. +|+|+
T Consensus 1 ~~~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~-----~~~~~~~eell~~---~D~Vv 72 (271)
T PRK13302 1 MSSRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR-----PPPVVPLDQLATH---ADIVV 72 (271)
T ss_pred CCCCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC-----CcccCCHHHHhcC---CCEEE
Confidence 4432347899999999999999999874 78876 889999998877664311 2456789998765 99999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE-EeCCCCCCH
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY-LGMGVSGGE 137 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~-i~~pvsGg~ 137 (505)
+|+|.. ...++.... +..|+.|+..+.....+.+++.+.+++.|..+ +..+-.+|-
T Consensus 73 i~tp~~-~h~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g~ 129 (271)
T PRK13302 73 EAAPAS-VLRAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLGL 129 (271)
T ss_pred ECCCcH-HHHHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHhH
Confidence 999986 445555444 34666566556555556777888888888765 554555443
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.1e-08 Score=106.79 Aligned_cols=112 Identities=12% Similarity=0.113 Sum_probs=92.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|.+|.+||+.... +..... ++...++++++++. +|+|++++|...+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 207 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQL-------GVELVDDLDELLAR---ADFITVHTPLTPET 207 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEcCCHHHHHhh---CCEEEEccCCChhh
Confidence 57999999999999999999999999999986322 111211 24455689999887 99999999998888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+...
T Consensus 208 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gA 251 (525)
T TIGR01327 208 RGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAA 251 (525)
T ss_pred ccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEE
Confidence 8888 567778999999999999999999999999988755443
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.9e-08 Score=94.86 Aligned_cols=149 Identities=14% Similarity=0.123 Sum_probs=109.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|||||.|.||+-+|..|.++||.|..++|+. .+.+++..+ ...++.+.++++. .+|+|++|+.. ..+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg------~~~ft~lhdlcer--hpDvvLlctsi-lsi 121 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYG------SAKFTLLHDLCER--HPDVVLLCTSI-LSI 121 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhc------ccccccHHHHHhc--CCCEEEEEehh-hhH
Confidence 369999999999999999999999999999997 444444432 3456788888875 59999999987 478
Q ss_pred HHHHHHHHhc-CCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHHHhhcCC--ccc----cCCC----HHH
Q 010637 87 DQTIAALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGP--SLM----PGGS----FEA 154 (505)
Q Consensus 87 ~~vl~~l~~~-l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~~a~~G~--~im----~gg~----~ea 154 (505)
+.++...-+. ++.|++++|..+..........+.+++ .+..+-+ |+.|.......+. .++ -.|. +|.
T Consensus 122 ekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPk-dfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~er 200 (480)
T KOG2380|consen 122 EKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK-DFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPER 200 (480)
T ss_pred HHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCcc-ccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHH
Confidence 8888777765 889999999988876666667777765 4555555 4554432222222 222 1343 788
Q ss_pred HHHHHHHHHHHhc
Q 010637 155 YNNIRDILQKVAA 167 (505)
Q Consensus 155 ~~~v~~ll~~iga 167 (505)
++.+.++|...+.
T Consensus 201 cE~fleIf~cegc 213 (480)
T KOG2380|consen 201 CEFFLEIFACEGC 213 (480)
T ss_pred HHHHHHHHHhcCC
Confidence 8999999999883
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.3e-08 Score=105.89 Aligned_cols=108 Identities=14% Similarity=0.187 Sum_probs=90.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+||++... +..... ++... +++++++. +|+|++++|.....
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~-~l~ell~~---aDiV~l~lP~t~~t 208 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQL-------GVELV-SLDELLAR---ADFITLHTPLTPET 208 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEE-cHHHHHhh---CCEEEEccCCChHh
Confidence 57999999999999999999999999999986432 122221 24444 89998887 99999999999888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
+.++ .+.+..+++|.++|+++.+...+...+.+.+.+..+
T Consensus 209 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 249 (526)
T PRK13581 209 RGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKV 249 (526)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCe
Confidence 8888 678888999999999999999999999999987644
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=97.75 Aligned_cols=121 Identities=16% Similarity=0.162 Sum_probs=92.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHH--------HhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL--------DRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~--------~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
++|||||+|.||+.+|+.|...|.+|.+|||+..+..... ...... .....++++++.. +|+|++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~ell~~---aDiVvl 232 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDE----KGGHEDIYEFAGE---ADIVVL 232 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccc----cCcccCHHHHHhh---CCEEEE
Confidence 5799999999999999999999999999999843211110 000000 0134588888887 999999
Q ss_pred EcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCC
Q 010637 79 LVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 79 ~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (505)
++|.....+.++ .+.+..+++|.++|+++-+..-+...+.+.|.+.-+.....-|+
T Consensus 233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence 999988888888 67788899999999999999999999999998765543333343
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.7e-08 Score=99.06 Aligned_cols=98 Identities=39% Similarity=0.700 Sum_probs=78.6
Q ss_pred hhhHHHhHhhHHHHHHHHHHH--hCCCCHHHHHHHHHHhccCC-cchhHHhhhhhhccccccCCCchh-HHHHHhhhCCC
Q 010637 191 HNGIEYGDMQLISEAYDVLKH--VGGLSNAELAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGEL-VDKILDKTGMK 266 (505)
Q Consensus 191 ~N~i~~~~~~~i~Ea~~l~~~--~g~l~~~~i~~v~~~~~~g~-~~s~l~~~~~~il~~~~~~~~~~~-l~~i~~~~~~k 266 (505)
+|.+.++.++.++|++.++++ .| +|++++.++ |+.+. ++|++++...+++.++ +.+. +..+.++ +
T Consensus 176 ~n~l~~~~~~~~aEa~~l~~~~~~g-ld~~~~~~~---~~~~~~~~s~~l~~~~~~~~~~----~~~~~~~~~~kd---~ 244 (301)
T PRK09599 176 HNGIEYGMMQAYAEGFELLEASRFD-LDLAAVAEV---WRRGSVIRSWLLDLTADALAED----PKLDEISGYVED---S 244 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHH---HhCCcHHHHHHHHHHHHHHhcC----CCHHHHHHHHHh---h
Confidence 478888999999999999999 88 999999887 57664 6999999999988543 2222 4344555 4
Q ss_pred chHHHHHHHHHHcCCCcchHHHHHHHHHHhcch
Q 010637 267 GTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299 (505)
Q Consensus 267 gtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~ 299 (505)
++.+|+++.|.+.|+|+|++++++..|+.+...
T Consensus 245 ~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~ 277 (301)
T PRK09599 245 GEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQE 277 (301)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 556899999999999999999988888887644
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.2e-08 Score=87.60 Aligned_cols=89 Identities=17% Similarity=0.264 Sum_probs=65.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH-HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|+|||.|..|.+.|+||.+.|++|.+..|..+ ..+...+.+ ++ ..+.+|+++. +|+|++.+|+. .
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~G-------f~-v~~~~eAv~~---aDvV~~L~PD~-~ 72 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADG-------FE-VMSVAEAVKK---ADVVMLLLPDE-V 72 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT--------E-CCEHHHHHHC----SEEEE-S-HH-H
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCC-------Ce-eccHHHHHhh---CCEEEEeCChH-H
Confidence 5799999999999999999999999999998877 444444443 44 3588888887 99999999994 5
Q ss_pred HHHHH-HHHHhcCCCCcEEEecC
Q 010637 86 VDQTI-AALSEHMSPGDCIIDGG 107 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~s 107 (505)
..+++ +++.|.|++|++++-..
T Consensus 73 q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 73 QPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp HHHHHHHHHHHHS-TT-EEEESS
T ss_pred HHHHHHHHHHhhCCCCCEEEeCC
Confidence 66777 88999999999887543
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.8e-06 Score=81.88 Aligned_cols=172 Identities=13% Similarity=0.115 Sum_probs=115.2
Q ss_pred CCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 29 GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 29 G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
.++|.+|+|++++.+.+.+.. ++..+.+..++++. +|+||+||++ ..+++++.++.+.+.++++||+..+
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLaVkP-~~i~~vl~~l~~~~~~~~~ivS~~a 78 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKEL------GIVASSDAQEAVKE---ADVVFLAVKP-QDLEEVLSELKSEKGKDKLLISIAA 78 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHc------CcEEeCChHHHHhh---CCEEEEEeCH-HHHHHHHHHHhhhccCCCEEEEecC
Confidence 468999999999988877642 35667888888887 9999999995 6899999999887777899999998
Q ss_pred CCchhHHHHHHHHHHCCCeEE-eCCCCCCHHHhhcCCccc-cCC--CHHHHHHHHHHHHHHhcccCCCCceEEeCCC--c
Q 010637 109 EWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGPSLM-PGG--SFEAYNNIRDILQKVAAQVDDGPCVTYIGEG--G 182 (505)
Q Consensus 109 ~~~~~t~~~~~~l~~~gi~~i-~~pvsGg~~~a~~G~~im-~gg--~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~--G 182 (505)
+.+.. .+.+.+.. +...+ -+|-. +.....|.+.+ ++. +++..+.++.+|+.+| .++++.+. -
T Consensus 79 gi~~~--~l~~~~~~-~~~ivR~mPn~--~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G-------~~~~v~E~~~~ 146 (245)
T TIGR00112 79 GVTLE--KLSQLLGG-TRRVVRVMPNT--PAKVGAGVTAIAANANVSEEDRALVLALFKAVG-------EVVELPEALMD 146 (245)
T ss_pred CCCHH--HHHHHcCC-CCeEEEECCCh--HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCC-------CEEEECHHHcc
Confidence 87544 44444432 12233 24532 23344666433 332 4566788999999999 34455432 1
Q ss_pred chhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010637 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDE 226 (505)
Q Consensus 183 ~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~ 226 (505)
....+--.-.++.+.++..+.++ +.+.| +++++..++..+
T Consensus 147 ~~talsgsgPA~~~~~~~al~~~---~v~~G-l~~~~A~~lv~~ 186 (245)
T TIGR00112 147 AVTALSGSGPAYVFLFIEALADA---GVKQG-LPRELALELAAQ 186 (245)
T ss_pred hHHhhccCcHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 11111123345555666666665 45567 999999888743
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=96.83 Aligned_cols=109 Identities=14% Similarity=0.260 Sum_probs=91.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|..+..-|.+|.+||+...+...... ......+++++.+. +|+|++.+|-....
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~--------~~~~~~~Ld~lL~~---sDiv~lh~PlT~eT 211 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVD--------GVVGVDSLDELLAE---ADILTLHLPLTPET 211 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccc--------cceecccHHHHHhh---CCEEEEcCCCCcch
Confidence 57999999999999999999999999999994433211111 24567899999998 99999999999888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
+.++ .+.+..+++|.++|+++-+...+...+.+.+.+..+
T Consensus 212 ~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i 252 (324)
T COG0111 212 RGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI 252 (324)
T ss_pred hcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCc
Confidence 8888 567778999999999999999999999999887544
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.3e-08 Score=100.17 Aligned_cols=116 Identities=13% Similarity=0.163 Sum_probs=90.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc--
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~-- 84 (505)
++|||||+|.||+.+|+.|...|++|.+||+..... .+ .....+++++++. +|+|++++|-..
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~-------~~~~~~l~ell~~---aDiV~lh~Plt~~g 181 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EG-------DGDFVSLERILEE---CDVISLHTPLTKEG 181 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----cc-------CccccCHHHHHhh---CCEEEEeCcCCCCc
Confidence 579999999999999999999999999999864321 11 1234689999887 999999999764
Q ss_pred --hHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 85 --PVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 85 --~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
.....+ ++.+..+++|.++|+++.+...+...+.+.+.+..+.....-|.-.+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~E 237 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGE 237 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 355666 56778899999999999999999999999888754433333344333
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.8e-07 Score=93.89 Aligned_cols=117 Identities=15% Similarity=0.221 Sum_probs=94.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++||||+|.+|+.+|+++..-|.+|..|||++. .+..+.. +....+ ++++++. +|+|.+.+|.....
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~------~~~y~~-l~ell~~---sDii~l~~Plt~~T 214 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKEL------GARYVD-LDELLAE---SDIISLHCPLTPET 214 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhc------Cceecc-HHHHHHh---CCEEEEeCCCChHH
Confidence 5799999999999999999977889999999975 2222221 233444 9999988 99999999999999
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
...+ .+.+..+++|.++|+++-+...+...+.+.|++.-+.-.+.-|.-
T Consensus 215 ~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e 264 (324)
T COG1052 215 RHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFE 264 (324)
T ss_pred hhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecC
Confidence 9888 677788999999999999999999999999988655433333443
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-07 Score=98.53 Aligned_cols=114 Identities=14% Similarity=0.188 Sum_probs=93.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+||+++.. ... ++....+++++++. +|+|++.+|.....
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~-----~~~------~~~~~~~l~ell~~---sDiVslh~Plt~~T 217 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKL-----PLG------NARQVGSLEELLAQ---SDVVSLHVPETPST 217 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccc-----ccC------CceecCCHHHHHhh---CCEEEEcCCCChHH
Confidence 57999999999999999999999999999987431 111 23456689999987 99999999998888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (505)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+.....-|+
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf 266 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVF 266 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCC
Confidence 8888 56778899999999999999999999999998765543333333
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.1e-07 Score=94.71 Aligned_cols=114 Identities=14% Similarity=0.225 Sum_probs=92.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+|||+.... .. .+. ..+++++++. +|+|++++|.....
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~-------~~~-~~~l~ell~~---sDvv~lh~Plt~~T 210 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NE-------EYE-RVSLEELLKT---SDIISIHAPLNEKT 210 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----cc-------Cce-eecHHHHhhc---CCEEEEeCCCCchh
Confidence 579999999999999999998899999999974321 11 122 4588998887 99999999998888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg 136 (505)
+..+ ++.+..+++|.++|+++-+..-+...+.+.|++..+. ...-|+-.
T Consensus 211 ~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~ 260 (311)
T PRK08410 211 KNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEK 260 (311)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCC
Confidence 8888 6777889999999999999999999999999876554 33334433
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.4e-07 Score=92.06 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=88.8
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La-~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|||||+|.+|+.+|+.+. .-|.+|.+||+...... .... ++. ..+++++++. +|+|++++|-...
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~-------~~~-~~~l~ell~~---sDvv~lh~plt~~ 213 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA-EERF-------NAR-YCDLDTLLQE---SDFVCIILPLTDE 213 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh-HHhc-------CcE-ecCHHHHHHh---CCEEEEeCCCChH
Confidence 57999999999999999997 67889999998753211 1111 233 3489999887 9999999999988
Q ss_pred HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCe
Q 010637 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
.+.++ .+.+..+++|.++|+++-+..-+...+.+.+.+..+.
T Consensus 214 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 214 THHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred HhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 88888 5678889999999999999999999999999876443
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.6e-07 Score=90.93 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=82.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCc-EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK--GFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~--G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
||||||||+|.||..++..|.+. +++ +.++|+++++.+.+.+.. +...+.++++++.. +|+|++|+|+
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------~~~~~~~~~ell~~---~DvVvi~a~~ 71 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------GAKACLSIDELVED---VDLVVECASV 71 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------CCeeECCHHHHhcC---CCEEEEcCCh
Confidence 36899999999999999999876 455 558999999988876642 24567899998754 9999999987
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCC---CchhHHHHHHHHHHCCCe-EEeCCCCCCH
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNE---WYLNTERRIHEASQKGLL-YLGMGVSGGE 137 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~---~~~~t~~~~~~l~~~gi~-~i~~pvsGg~ 137 (505)
. ...+.+..++. .|.-++..|.. .....+++.+..++.|.. ++..+..+|-
T Consensus 72 ~-~~~~~~~~al~---~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~ 126 (265)
T PRK13304 72 N-AVEEVVPKSLE---NGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGL 126 (265)
T ss_pred H-HHHHHHHHHHH---cCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhH
Confidence 4 55555555443 45445555542 334455666667777754 4444444443
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.5e-07 Score=93.05 Aligned_cols=111 Identities=16% Similarity=0.067 Sum_probs=79.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|||+|.||..+|..|...|.+|+++||++++.+.+.+.+.. .....++.+++. .+|+||.++|.. .+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~-----~~~~~~l~~~l~---~aDiVint~P~~-ii 222 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLI-----PFPLNKLEEKVA---EIDIVINTIPAL-VL 222 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCe-----eecHHHHHHHhc---cCCEEEECCChH-Hh
Confidence 579999999999999999999999999999999877665443211 111223444444 499999999875 21
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
. .+..+.++++.+|||.++..-.+.. +..+++|+..+-+|
T Consensus 223 ~---~~~l~~~k~~aliIDlas~Pg~tdf---~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 223 T---ADVLSKLPKHAVIIDLASKPGGTDF---EYAKKRGIKALLAP 262 (287)
T ss_pred C---HHHHhcCCCCeEEEEeCcCCCCCCH---HHHHHCCCEEEEeC
Confidence 1 3456678889999999886544322 45567788777554
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=6e-07 Score=91.60 Aligned_cols=105 Identities=12% Similarity=0.108 Sum_probs=88.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+|||.... .. . ...+++++++. +|+|++++|-....
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~-------~-~~~~l~ell~~---sDiv~l~lPlt~~T 211 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------AR-------P-DRLPLDELLPQ---VDALTLHCPLTEHT 211 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------cc-------c-cccCHHHHHHh---CCEEEECCCCChHH
Confidence 47999999999999999999999999999986321 00 1 12478898887 99999999998888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+..+ .+....+++|.++|+++-+..-+...+.+.+.+..+..
T Consensus 212 ~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~g 254 (317)
T PRK06487 212 RHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGG 254 (317)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeE
Confidence 8888 67778899999999999999999999999998765543
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.3e-06 Score=81.02 Aligned_cols=202 Identities=13% Similarity=0.144 Sum_probs=134.0
Q ss_pred CCcEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChHHHHHH-HHhhcccCCCCeeeeCCHH
Q 010637 6 LSRIGLAGLAVM--------------------GQNLALNVAEKGFPISVYNRTTSKVDET-LDRAHREGQLPLTGHYTPR 64 (505)
Q Consensus 6 ~~~IgIIGlG~M--------------------G~~lA~~La~~G~~V~v~dr~~~~~~~l-~~~~~~~g~~~i~~~~s~~ 64 (505)
+|||+|+|+|+- |..||..++++||+|.+.+.+.+-.+.- .+..... +++.+++..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedA---GV~vv~dD~ 77 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDA---GVEVVSDDA 77 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhc---CcEEecCch
Confidence 368999999864 6789999999999999998876543221 2222222 478888888
Q ss_pred HHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHH-HHHHHHHC----CCe-EEeCCCCCCHH
Q 010637 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTER-RIHEASQK----GLL-YLGMGVSGGEE 138 (505)
Q Consensus 65 e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~-~~~~l~~~----gi~-~i~~pvsGg~~ 138 (505)
+.++. +++.++.+|-+...-.+..+|+++++.|.+|.++.|.+|..... +...|+.+ |+. +..++|.|.+.
T Consensus 78 eaa~~---~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~ 154 (340)
T COG4007 78 EAAEH---GEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ 154 (340)
T ss_pred hhhhc---ceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC
Confidence 88887 99999999999888888999999999999999999988766544 33334322 442 22234544432
Q ss_pred HhhcCCccccC--------CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHH
Q 010637 139 GARHGPSLMPG--------GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (505)
Q Consensus 139 ~a~~G~~im~g--------g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~ 210 (505)
+|-.++.| ..+|..+++.++.++.| +.++.+-.+-.....- ..-.+....++.+.+-|....
T Consensus 155 ---h~~yviagr~t~g~elATeEQi~r~velaes~G------k~~yv~padv~s~VaD-mg~lvtav~l~gvldyy~Vg~ 224 (340)
T COG4007 155 ---HGHYVIAGRSTEGKELATEEQIERCVELAESTG------KEVYVLPADVVSAVAD-MGVLVTAVALSGVLDYYYVGT 224 (340)
T ss_pred ---CceEEEeccCCCceeeccHHHHHHHHHHHHhcC------CceEecCHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 25677888999999999 6666553321111111 122344456777788888877
Q ss_pred HhCCCCHHHHHHH
Q 010637 211 HVGGLSNAELAEI 223 (505)
Q Consensus 211 ~~g~l~~~~i~~v 223 (505)
+.-|.+.+-|.+-
T Consensus 225 qIi~AP~eMIekQ 237 (340)
T COG4007 225 QIIGAPKEMIEKQ 237 (340)
T ss_pred HHhCCcHHHHHHH
Confidence 6554666655444
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.3e-07 Score=91.82 Aligned_cols=106 Identities=12% Similarity=0.152 Sum_probs=88.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+||+.... .. . ....++++++.. +|+|++++|-....
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~-~----------~~~~~l~ell~~---sDiv~l~~Plt~~T 211 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC-R----------EGYTPFEEVLKQ---ADIVTLHCPLTETT 211 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc-c----------cccCCHHHHHHh---CCEEEEcCCCChHH
Confidence 57999999999999999999999999999986421 10 0 113588998887 99999999988888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+..+ .+.+..+++|.++|+++-+..-+...+.+.+.+..+..
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~g 254 (314)
T PRK06932 212 QNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAG 254 (314)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccE
Confidence 8888 67778899999999999999999999999998765543
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.8e-07 Score=95.63 Aligned_cols=106 Identities=11% Similarity=0.171 Sum_probs=85.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch-
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~- 85 (505)
++|||||+|.||+.+|+.|..-|.+|.+||+.... ... .....+++++++. ||+|++.+|-...
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~------~~~------~~~~~~L~ell~~---sDiI~lh~PLt~~g 181 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD------RGD------EGDFRSLDELVQE---ADILTFHTPLFKDG 181 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc------ccc------ccccCCHHHHHhh---CCEEEEeCCCCCCc
Confidence 57999999999999999999999999999975321 110 0124689999887 9999999986542
Q ss_pred ---HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCe
Q 010637 86 ---VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 86 ---v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
....+ ++.+..+++|.++|+++-+..-+...+.+.+++..+.
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ 227 (378)
T PRK15438 182 PYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKL 227 (378)
T ss_pred ccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCc
Confidence 55556 5777889999999999999999999999998875443
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-07 Score=93.94 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=85.0
Q ss_pred CcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|+|||+|.||..++..+.. ...+|.+|||++++.+++.+.....+ .++..+.++++++.. +|+|+.+++...
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g-~~~~~~~~~~~av~~---aDIVi~aT~s~~ 201 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQG-FDAEVVTDLEAAVRQ---ADIISCATLSTE 201 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcC-CceEEeCCHHHHHhc---CCEEEEeeCCCC
Confidence 579999999999999985554 45789999999999999887642211 136678899988877 999988888753
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
.++.. ..+++|. +|++.++.+...+++...+.+++..|+|-
T Consensus 202 ---pvl~~--~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 202 ---PLVRG--EWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred ---CEecH--HHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 33321 3467887 67777777667777776666666677774
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=90.29 Aligned_cols=128 Identities=9% Similarity=0.139 Sum_probs=93.7
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChHH-HHHHHHhhcc----cC--CCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSK-VDETLDRAHR----EG--QLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La-~~G~~V~v~dr~~~~-~~~l~~~~~~----~g--~~~i~~~~s~~e~v~~l~~advIil 78 (505)
++|||||+|.+|+.+|+.|. .-|.+|.+||++... .+.+...... .+ ..++....+++++++. +|+|++
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~---sDiV~l 242 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE---ADVISL 242 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh---CCEEEE
Confidence 57999999999999999986 679999999998642 1211111000 00 0011224588998887 999999
Q ss_pred EcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 79 LVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 79 ~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
++|-....+..+ .+.+..+++|.++|+++-+..-+...+.+.+++..+.....-|+-.+
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~E 302 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDE 302 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCC
Confidence 999888888888 67778899999999999999999999999998765544433454433
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.6e-07 Score=90.72 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=62.3
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG-~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|+|||.| .||.+||.+|.++|++|++|++.. .+++++++. +|+||++++....
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------------------~~l~e~~~~---ADIVIsavg~~~~ 215 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------------------TDAKALCRQ---ADIVVAAVGRPRL 215 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------------------CCHHHHHhc---CCEEEEecCChhc
Confidence 579999996 999999999999999999998653 256677776 9999999998766
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
++.+. +++|.+|||+|...
T Consensus 216 v~~~~------ik~GaiVIDvgin~ 234 (301)
T PRK14194 216 IDADW------LKPGAVVIDVGINR 234 (301)
T ss_pred ccHhh------ccCCcEEEEecccc
Confidence 66543 78999999998754
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.3e-05 Score=77.26 Aligned_cols=207 Identities=13% Similarity=0.124 Sum_probs=143.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChHHHHHHHH---------------hhcccCCCCeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLD---------------RAHREGQLPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~---------------~~~~~g~~~i~~~~s~~e~v~ 68 (505)
|+||+-||+|.+|.+-...++-+- .+|++.|.+..++.+... .... .++...++.+..+.
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crg---knlffstdiekai~ 77 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRG---KNLFFSTDIEKAIK 77 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcC---CceeeecchHHHhh
Confidence 368999999999999887777553 578899999887654432 1111 25777888888888
Q ss_pred hcCCCcEEEEEcCCCc--------------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHH--HCCCeE--Ee
Q 010637 69 SIQRPRSVIILVKAGS--------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QKGLLY--LG 130 (505)
Q Consensus 69 ~l~~advIil~vp~~~--------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~--~~gi~~--i~ 130 (505)
. +|+||++|..+. -+++....+.......+||+.-||......+.+.+.+. .+|++| +.
T Consensus 78 e---adlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqils 154 (481)
T KOG2666|consen 78 E---ADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILS 154 (481)
T ss_pred h---cceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEecc
Confidence 7 999999995432 23444455666666778999999999999888888875 347766 33
Q ss_pred CCCCCCH---HHhhcCC-ccccCCC--HHHHHHHHH---HHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhH
Q 010637 131 MGVSGGE---EGARHGP-SLMPGGS--FEAYNNIRD---ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQL 201 (505)
Q Consensus 131 ~pvsGg~---~~a~~G~-~im~gg~--~ea~~~v~~---ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~ 201 (505)
-|-+-.+ ..-...| .++.||. +|-++.++. +++..-.+ ..+ .....=++...|++.|++.+--+..
T Consensus 155 npeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~----~~i-ittntwsselsklaanaflaqriss 229 (481)
T KOG2666|consen 155 NPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPR----EQI-ITTNTWSSELSKLAANAFLAQRISS 229 (481)
T ss_pred ChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcc----cce-eeccccHHHHHHHHHHHHHHHHHhh
Confidence 3422211 1112234 6778884 454444444 44443310 122 2334567889999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHH
Q 010637 202 ISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 202 i~Ea~~l~~~~g~l~~~~i~~v~ 224 (505)
++-..++++..| .+..++..++
T Consensus 230 ins~salceatg-adv~eva~av 251 (481)
T KOG2666|consen 230 INSMSALCEATG-ADVSEVAYAV 251 (481)
T ss_pred hHHHHHHHHhcC-CCHHHHHHHh
Confidence 999999999998 9988888775
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.43 E-value=1e-06 Score=79.60 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=76.6
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhccc----CCCCe---eeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----GQLPL---TGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 9 IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~----g~~~i---~~~~s~~e~v~~l~~advIil~vp 81 (505)
|.|+|+|.||.-+|..|++.|++|.++.|++ +.+.+.+.+..- +...+ ....+..+... .+|+||+|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAG---PYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHS---TESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccC---CCcEEEEEec
Confidence 7899999999999999999999999999999 777776654210 00001 11112212223 3899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEA 121 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l 121 (505)
.. +++++++.+.+.+.+++.|+-..|+.... +.+.+.+
T Consensus 77 a~-~~~~~l~~l~~~~~~~t~iv~~qNG~g~~-~~l~~~~ 114 (151)
T PF02558_consen 77 AY-QLEQALQSLKPYLDPNTTIVSLQNGMGNE-EVLAEYF 114 (151)
T ss_dssp GG-GHHHHHHHHCTGEETTEEEEEESSSSSHH-HHHHCHS
T ss_pred cc-chHHHHHHHhhccCCCcEEEEEeCCCCcH-HHHHHHc
Confidence 95 78999999999999998999888986433 3344443
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.4e-06 Score=86.45 Aligned_cols=109 Identities=14% Similarity=0.216 Sum_probs=90.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+-++|||+|+|.+|+.+|++|..-|..+..++|++...+...+... . ..+.+++..+ +|+|++++|...
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~-------~-~~d~~~~~~~---sD~ivv~~pLt~ 229 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA-------E-FVDIEELLAN---SDVIVVNCPLTK 229 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc-------c-ccCHHHHHhh---CCEEEEecCCCH
Confidence 3468999999999999999999999455566787776666554432 1 4588888887 999999999999
Q ss_pred hHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC
Q 010637 85 PVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (505)
Q Consensus 85 ~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~ 124 (505)
....++ .++...+++|.+||+++-+..-+.+.+.+.+++-
T Consensus 230 ~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 230 ETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred HHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence 999999 5788899999999999999999998888888764
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.1e-06 Score=70.30 Aligned_cols=112 Identities=14% Similarity=0.211 Sum_probs=81.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+||||||+|.+|......+.+. +++|. ++|+++++.+.+.+.. ++..++|.+++.+. ...|+|++++|+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY------GIPVYTDLEELLAD-EDVDAVIIATPPS 73 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------TSEEESSHHHHHHH-TTESEEEEESSGG
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh------cccchhHHHHHHHh-hcCCEEEEecCCc
Confidence 3799999999999999998877 45654 7899999988886653 46689999999984 2489999999997
Q ss_pred chHHHHHHHHHhcCCCCcEEEec-CCCCchhHHHHHHHHHHCCCeE
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
...+-+...+.... .++++- -.....+.+++.+..+++|..+
T Consensus 74 ~h~~~~~~~l~~g~---~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 74 SHAEIAKKALEAGK---HVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp GHHHHHHHHHHTTS---EEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred chHHHHHHHHHcCC---EEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 65444433332211 566663 2235567777888777777653
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.7e-06 Score=85.97 Aligned_cols=110 Identities=17% Similarity=0.097 Sum_probs=78.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+++|||+|.+|..++..|...|.+|+++||++++.+.....+.. .....++.+.+. .+|+||.++|...
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~-----~~~~~~l~~~l~---~aDiVI~t~p~~~-- 222 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLS-----PFHLSELAEEVG---KIDIIFNTIPALV-- 222 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCe-----eecHHHHHHHhC---CCCEEEECCChhh--
Confidence 589999999999999999999999999999998876655543311 111223444444 4999999998642
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
+-++....++++.+|||.++..-. +. . +..+++|+..+.+
T Consensus 223 --i~~~~l~~~~~g~vIIDla~~pgg-td-~-~~a~~~Gv~~~~~ 262 (296)
T PRK08306 223 --LTKEVLSKMPPEALIIDLASKPGG-TD-F-EYAEKRGIKALLA 262 (296)
T ss_pred --hhHHHHHcCCCCcEEEEEccCCCC-cC-e-eehhhCCeEEEEE
Confidence 224556678899999999886544 32 1 3456678877764
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.33 E-value=2e-06 Score=85.89 Aligned_cols=116 Identities=21% Similarity=0.253 Sum_probs=81.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc--
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~-- 84 (505)
+++.|+|+|.+|.+++..|++.|++|.++||++++.+++.+.....+ .+. ..+..+.. +..+|+||.++|.+.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~--~~~-~~~~~~~~--~~~~DivInatp~gm~~ 192 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYG--EIQ-AFSMDELP--LHRVDLIINATSAGMSG 192 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcC--ceE-Eechhhhc--ccCccEEEECCCCCCCC
Confidence 47999999999999999999999999999999999888776532111 122 22333322 234899999999862
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.++.+.- ....+.++.+++|++...+.+ .+.+..+++|.++++
T Consensus 193 ~~~~~~~-~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vd 235 (270)
T TIGR00507 193 NIDEPPV-PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTID 235 (270)
T ss_pred CCCCCCC-CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeC
Confidence 1211100 023467889999998876644 577778888887765
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.1e-05 Score=74.59 Aligned_cols=124 Identities=8% Similarity=0.069 Sum_probs=85.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+|+|||. |.||+.++..|.++||.|++ .+ +|+||+|+|.. .
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~---------------------------------~~---~DlVilavPv~-~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI---------------------------------KK---ADHAFLSVPID-A 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE---------------------------------CC---CCEEEEeCCHH-H
Confidence 58999988 99999999999999999861 11 89999999995 6
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHHHhhcC---Ccccc--CCCHHHHHHHH
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHG---PSLMP--GGSFEAYNNIR 159 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~~a~~G---~~im~--gg~~ea~~~v~ 159 (505)
+.++++++. .+|+|.++....- .+ .+..|++. |+.| ++.+..+ ..+++ ..++++.+.++
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i----~~----~~~~~vg~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~ 108 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPF----KK----YSGKIVSIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEIN 108 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHH----HH----hcCCEEecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHH
Confidence 677776654 3799999987531 11 24578886 6665 4444433 33322 34667778888
Q ss_pred HHHHHHhcccCCCCceEEeCCCcchhhhhhH
Q 010637 160 DILQKVAAQVDDGPCVTYIGEGGSGNFVKMV 190 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v 190 (505)
.+++ | ..++.+.+...-..+-.+
T Consensus 109 ~l~~--G------~~~~~~t~eeHD~~~A~i 131 (197)
T PRK06444 109 EMFR--G------YHFVEMTADEHDLLMSEI 131 (197)
T ss_pred HHHc--C------CEEEEeCHHHHHHHHHHH
Confidence 8887 6 467777765444444333
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.9e-06 Score=85.46 Aligned_cols=95 Identities=18% Similarity=0.129 Sum_probs=68.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|+|||+|.||..++..|...| .+|.++||++++.+++.+.... .+...++..+.+. .+|+||.+++.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~---~aDvVi~at~~~~ 250 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG----NAVPLDELLELLN---EADVVISATGAPH 250 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC----eEEeHHHHHHHHh---cCCEEEECCCCCc
Confidence 468999999999999999999866 6899999999998888765321 1222233444444 4999999999875
Q ss_pred hHHHHHHHHHhcC-CCCcEEEecCC
Q 010637 85 PVDQTIAALSEHM-SPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l-~~g~iIId~st 108 (505)
. ...+..+.... .++.++||.+.
T Consensus 251 ~-~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 251 Y-AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred h-HHHHHHHHhhCCCCCeEEEEeCC
Confidence 5 44444444333 36789999985
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.8e-05 Score=82.08 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=92.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~ 82 (505)
|++|-|||+|.+|+..|..|+++| ++|++-||+.++++++......+ ..... ..+.+.+.+-|++.|+||.+.|.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~--v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGK--VEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcccc--ceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 468999999999999999999999 99999999999999887653110 11111 23444555555568999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE-EeCCCCCCHHH
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY-LGMGVSGGEEG 139 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~-i~~pvsGg~~~ 139 (505)
.. -..+++. .++.|.-++|+|.-.+.. .++.....+.|+.. +++++.-|...
T Consensus 79 ~~-~~~i~ka---~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~n 131 (389)
T COG1748 79 FV-DLTILKA---CIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGITN 131 (389)
T ss_pred hh-hHHHHHH---HHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchHH
Confidence 63 3344433 355788999998877664 66777777778765 45777766543
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.9e-06 Score=85.15 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=60.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEe-CChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYN-RTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~d-r~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++|+||| .|.||.+||.+|.++|++|++|+ |++ +++++++. +|+||+|++...
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------------------~l~e~~~~---ADIVIsavg~~~ 213 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------------------DLPAVCRR---ADILVAAVGRPE 213 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------------------CHHHHHhc---CCEEEEecCChh
Confidence 5799999 99999999999999999999995 553 34455665 999999999976
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.++.++ +.+|.+|||+|...
T Consensus 214 ~v~~~~------lk~GavVIDvGin~ 233 (296)
T PRK14188 214 MVKGDW------IKPGATVIDVGINR 233 (296)
T ss_pred hcchhe------ecCCCEEEEcCCcc
Confidence 555443 78999999998754
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=1e-05 Score=82.25 Aligned_cols=104 Identities=18% Similarity=0.186 Sum_probs=67.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHh----hcccC-CCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDR----AHREG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~----~~~~g-~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|+||+|||+|.||..+|..++..|+ +|.++|+++++.+..... ....+ ..+++.+.+.+++ .. +|+||++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~-~~---aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDI-AG---SDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHH-CC---CCEEEEC
Confidence 4699999999999999999999876 999999998765432211 11000 0134444566543 33 9999998
Q ss_pred cCCC---------------chHHHHHHHHHhcCCCCcEEEecCCCCchhH
Q 010637 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (505)
+..+ ..+++++..+.+.. ++.++|..||-....+
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d~~~ 126 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVDAMT 126 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHH
Confidence 7321 12445556666665 5567777777543333
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.6e-06 Score=74.35 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=67.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..++.|||+|-||+.++..|++.|.+ |+++||+.++.+++.+...... ..+...+++.+.... +|+||.++|.+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~-~~~~~~~~~~~~~~~---~DivI~aT~~~~ 87 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVN-IEAIPLEDLEEALQE---ADIVINATPSGM 87 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCS-EEEEEGGGHCHHHHT---ESEEEE-SSTTS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccc-cceeeHHHHHHHHhh---CCeEEEecCCCC
Confidence 45799999999999999999999987 9999999999999987652210 012334445545554 999999999885
Q ss_pred hHHHHHHHHHhcCCCC-cEEEecCC
Q 010637 85 PVDQTIAALSEHMSPG-DCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g-~iIId~st 108 (505)
. .+-.+..+...+. .+++|.+.
T Consensus 88 ~--~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 88 P--IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp T--SSTHHHHTTTCHHCSEEEES-S
T ss_pred c--ccCHHHHHHHHhhhhceecccc
Confidence 4 1113333322222 49999973
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.8e-06 Score=85.07 Aligned_cols=105 Identities=39% Similarity=0.701 Sum_probs=93.8
Q ss_pred hhhhHhhhHHHhHhhHHHHHHHHHHHhC-CCCHHHHHHHHHHhccCC-cchhHHhhhhhhccccccCCCchhHHHHHhhh
Q 010637 186 FVKMVHNGIEYGDMQLISEAYDVLKHVG-GLSNAELAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGELVDKILDKT 263 (505)
Q Consensus 186 ~vK~v~N~i~~~~~~~i~Ea~~l~~~~g-~l~~~~i~~v~~~~~~g~-~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~ 263 (505)
++|++||++.++.++.++|++.++++.| |+|++++.++ |+.|. ++||+++++.+++.+++ .++.+.+.+
T Consensus 169 ~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i---~~~g~~~~s~~l~~~~~~~~~~~------~~~~~~~~~ 239 (298)
T TIGR00872 169 FVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARV---WRRGSVIRSWLLDLTAIAFRESP------DLAEFSGRV 239 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHH---HcCCchhHhHHHHHHHHHHhcCC------cHHHHHHHH
Confidence 6899999999999999999999999974 3799999888 78876 69999999999987632 456788888
Q ss_pred CCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcch
Q 010637 264 GMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299 (505)
Q Consensus 264 ~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~ 299 (505)
.++++|+|++.+|.++|+|+|++++|++.|+.|..+
T Consensus 240 ~~~~~~r~~v~~a~~~g~p~P~~~~al~~~~~~~~~ 275 (298)
T TIGR00872 240 SDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDL 275 (298)
T ss_pred HhhccHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 899999999999999999999999999999999876
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.4e-05 Score=82.00 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=73.1
Q ss_pred CcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++||||+|.||...+..|.. ...+|.+|||++++.+.+.+.....| ..+..+.++++++++ +|+|++|+|+..
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g-~~v~~~~~~~eav~~---aDiVitaT~s~~ 204 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYE-VPVRAATDPREAVEG---CDILVTTTPSRK 204 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhC-CcEEEeCCHHHHhcc---CCEEEEecCCCC
Confidence 579999999999997666654 45689999999999988876532211 136778999999987 999999999875
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
+ ++. ...+++|..|...++..|.
T Consensus 205 P---~~~--~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 205 P---VVK--ADWVSEGTHINAIGADAPG 227 (325)
T ss_pred c---Eec--HHHcCCCCEEEecCCCCcc
Confidence 4 321 1246889999888876653
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.7e-05 Score=78.18 Aligned_cols=86 Identities=16% Similarity=0.301 Sum_probs=69.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|+|||.|.-|.+-|+||.++|.+|++--|.... .+...+.+ +. ..+++|++.. +|+|++.+|+. .
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dG-------f~-V~~v~ea~k~---ADvim~L~PDe-~ 86 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDG-------FK-VYTVEEAAKR---ADVVMILLPDE-Q 86 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcC-------CE-eecHHHHhhc---CCEEEEeCchh-h
Confidence 57999999999999999999999999988777665 33333332 34 5689999887 99999999995 5
Q ss_pred HHHHHH-HHHhcCCCCcEEE
Q 010637 86 VDQTIA-ALSEHMSPGDCII 104 (505)
Q Consensus 86 v~~vl~-~l~~~l~~g~iII 104 (505)
-.+|++ ++.|.|++|+.+.
T Consensus 87 q~~vy~~~I~p~Lk~G~aL~ 106 (338)
T COG0059 87 QKEVYEKEIAPNLKEGAALG 106 (338)
T ss_pred HHHHHHHHhhhhhcCCceEE
Confidence 567775 8999999998654
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.6e-05 Score=77.92 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=66.9
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHH--H--HHhhcccC-CCCeeeeCCHHHHHhhcCCCc
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDE--T--LDRAHREG-QLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~--l--~~~~~~~g-~~~i~~~~s~~e~v~~l~~ad 74 (505)
|.|-..+||+|||+|.||..+|..++..|+ +|.++|+++++.+. + .......+ ..+++.+.+.+++ .+ +|
T Consensus 1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l-~~---aD 76 (321)
T PTZ00082 1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDI-AG---SD 76 (321)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHh-CC---CC
Confidence 555556799999999999999999999996 89999999985421 1 11100000 0135555676544 33 99
Q ss_pred EEEEEcCC----Cc----------------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 75 SVIILVKA----GS----------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 75 vIil~vp~----~~----------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+||++.-. +. .++++++.+.+.. +..++|..||..
T Consensus 77 iVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~ 131 (321)
T PTZ00082 77 VVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPL 131 (321)
T ss_pred EEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 99997622 11 1334445555555 445777777754
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.6e-05 Score=71.15 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=78.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCc-EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++||+||+|.+|..+...+.+. .++ |.+|||+.+++.++.+... ...+++++|+++. +|+++.|-..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~------~~~~s~ide~~~~---~DlvVEaAS~- 70 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVG------RRCVSDIDELIAE---VDLVVEAASP- 70 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcC------CCccccHHHHhhc---cceeeeeCCH-
Confidence 4799999999999999877754 344 6799999999988776432 3345889999866 9999999866
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE--EeCCCCCCH
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY--LGMGVSGGE 137 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~--i~~pvsGg~ 137 (505)
+++++...+++.. ..+-+|+..+.-..+...++...+.+.+-+. +..+-.||-
T Consensus 71 ~Av~e~~~~~L~~-g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGl 125 (255)
T COG1712 71 EAVREYVPKILKA-GIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGL 125 (255)
T ss_pred HHHHHHhHHHHhc-CCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhH
Confidence 4666666555432 1234555555544444444444455554433 333444543
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.8e-05 Score=69.03 Aligned_cols=98 Identities=17% Similarity=0.220 Sum_probs=63.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHhC-CCcEEEE-eCChHHHHHHHHhhcccCCCCee-eeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 8 RIGLAG-LAVMGQNLALNVAEK-GFPISVY-NRTTSKVDETLDRAHREGQLPLT-GHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~-G~~V~v~-dr~~~~~~~l~~~~~~~g~~~i~-~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
||+||| .|.+|..++..|.++ ++++... +++.++.+.+...+.... ++. ...+..++.. ..+|+||+|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~DvV~~~~~~~ 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLK--GEVVLELEPEDFEE--LAVDIVFLALPHG 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccc--cccccccccCChhh--cCCCEEEEcCCcH
Confidence 689999 499999999999985 7887755 666543333333321100 010 0111122221 2489999999997
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
....++..+.+.+.+|.+|||+|+..
T Consensus 77 -~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 77 -VSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred -HHHHHHHHHHhhhcCCCEEEECCccc
Confidence 55556555666678999999999875
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00011 Score=71.19 Aligned_cols=99 Identities=20% Similarity=0.312 Sum_probs=71.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh-hcccCCCCeeeeCCHHHHHhh--cCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTGHYTPRDFVLS--IQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-~~~~g~~~i~~~~s~~e~v~~--l~~advIil~vp~~ 83 (505)
|+|.|||+|.+|..+|+.|.+.||+|.+.|+++++++++... .... -+....+-.++.++ +..+|+++.++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~---~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTH---VVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceE---EEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 589999999999999999999999999999999999886552 1110 13334444455443 46799999999886
Q ss_pred chHHHHHHHHHhc-CCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEH-MSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~-l~~g~iIId~st~ 109 (505)
.+..++-.+... +....+|.-..+.
T Consensus 78 -~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 78 -EVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 567676655533 5555666665554
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.5e-05 Score=79.45 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=61.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|+|||. |.||.+||.+|.++|++|++|... +.++++.+.. +|+||.+++....
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------------------t~~l~~~~~~---ADIVI~avg~~~~ 214 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------------------TRNLAEVARK---ADILVVAIGRGHF 214 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEecCcccc
Confidence 57999999 999999999999999999999311 2367777776 9999999998876
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
++... +++|.+|||+|...
T Consensus 215 v~~~~------ik~GavVIDvgin~ 233 (284)
T PRK14179 215 VTKEF------VKEGAVVIDVGMNR 233 (284)
T ss_pred CCHHH------ccCCcEEEEeccee
Confidence 66543 78999999998764
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.99 E-value=4e-05 Score=77.82 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=70.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHH----HHhhcccC-CCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDET----LDRAHREG-QLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l----~~~~~~~g-~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+|.||..+|..|+.+|+ +|.++|++++..+.. .+...... ..+++.+.+.+++ .+ +|+||+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~-~~---aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADT-AN---SDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHh-CC---CCEEEEcC
Confidence 589999999999999999999887 899999977654311 11111000 0146666787774 44 99999999
Q ss_pred CCC---------------chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHH
Q 010637 81 KAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR 117 (505)
Q Consensus 81 p~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~ 117 (505)
+.+ ..++++++.+.++. ++.+||..||-....+.-.
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~t~~~ 128 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAMTYVA 128 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHH
Confidence 732 12344446666664 5678888888544344333
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.2e-05 Score=67.13 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=70.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHh-CCCcEE-EEeCChH-H----HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 7 SRIGLAGL-AVMGQNLALNVAE-KGFPIS-VYNRTTS-K----VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~-~G~~V~-v~dr~~~-~----~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|||+|+|+ |.||+.++..+.+ .|+++. +++|+++ . +.++.... . .++...++++++.+. +|+||-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~---~~~~v~~~l~~~~~~---~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-P---LGVPVTDDLEELLEE---ADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T----SSBEBS-HHHHTTH----SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-C---cccccchhHHHhccc---CCEEEE
Confidence 58999999 9999999999998 688855 6788872 1 11222111 1 146778999999888 999998
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~ 124 (505)
...+ ..+.+.++.... .|..+|-++|+......+..+.+.++
T Consensus 74 fT~p-~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 74 FTNP-DAVYDNLEYALK---HGVPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp ES-H-HHHHHHHHHHHH---HT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred cCCh-HHhHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 8733 355555554444 47888888998865555555555554
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.8e-05 Score=81.93 Aligned_cols=105 Identities=13% Similarity=0.244 Sum_probs=75.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++++|+|+|.+|.+++..|++.|++|.++||++++.+.+.+.... . ..+.+++ ..+..+|+||.|+|.+..+
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~------~-~~~~~~~-~~l~~~DiVInatP~g~~~ 404 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQG------K-AFPLESL-PELHRIDIIINCLPPSVTI 404 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc------c-eechhHh-cccCCCCEEEEcCCCCCcc
Confidence 579999999999999999999999999999999988887654211 1 1122222 1234599999999998654
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
... +. .+++|+....+.+. +.+..+++|...++
T Consensus 405 ~~~-------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~ 437 (477)
T PRK09310 405 PKA-------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIY 437 (477)
T ss_pred hhH-------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence 321 11 38999988765443 66777778876554
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.3e-05 Score=81.95 Aligned_cols=87 Identities=20% Similarity=0.232 Sum_probs=67.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC------hHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRT------TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~------~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
++|+|||+|..|.+.|.||...|++|++--|. .+..+.+.+.+ +.+ .+++|++.. +|+|++.+
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dG-------F~v-~~~~Ea~~~---ADvVviLl 105 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG-------FKV-GTYEELIPQ---ADLVINLT 105 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcC-------Ccc-CCHHHHHHh---CCEEEEcC
Confidence 58999999999999999999999999954443 33444433332 333 678888887 99999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEe
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIID 105 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId 105 (505)
|+. .-..+.+++.|.+++|.++.-
T Consensus 106 PDt-~q~~v~~~i~p~LK~Ga~L~f 129 (487)
T PRK05225 106 PDK-QHSDVVRAVQPLMKQGAALGY 129 (487)
T ss_pred ChH-HHHHHHHHHHhhCCCCCEEEe
Confidence 997 456666899999999987754
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.2e-05 Score=82.05 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=66.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+|+|||+|.||..++.+|...|. +|+++||++++.+.+.+...... ..+...+++.+.+.. +|+||.+++.+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~-i~~~~~~dl~~al~~---aDVVIsAT~s~~ 341 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVE-IIYKPLDEMLACAAE---ADVVFTSTSSET 341 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCc-eEeecHhhHHHHHhc---CCEEEEccCCCC
Confidence 3579999999999999999999997 69999999999998886532100 011223445555554 999999987765
Q ss_pred h--HHHHHHHHHhcC---CCCcEEEecCC
Q 010637 85 P--VDQTIAALSEHM---SPGDCIIDGGN 108 (505)
Q Consensus 85 ~--v~~vl~~l~~~l---~~g~iIId~st 108 (505)
. ..+.++.+.+.- .+..++||.+-
T Consensus 342 pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 342 PLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred CeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 4 233344433211 12247888754
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00016 Score=73.48 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=60.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChHHHHH-HHHhhcccCC-CC-eeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDE-TLDRAHREGQ-LP-LTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G--~~V~v~dr~~~~~~~-l~~~~~~~g~-~~-i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|||+|||+|.+|.++|..|+.+| .+|.++|+++++.+. ..+....... .. ...+.+.++ +. .+|+||++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l~---~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-CK---GADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH-hC---CCCEEEEccC
Confidence 48999999999999999999999 589999999887653 2211100000 01 112344444 33 4999999997
Q ss_pred CCc---------------hHHHHHHHHHhcCCCCcEEEecCC
Q 010637 82 AGS---------------PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~---------------~v~~vl~~l~~~l~~g~iIId~st 108 (505)
.+. .++++++.+..+-+. .+++..+|
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~-giiiv~tN 117 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPD-AILLVVTN 117 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEecC
Confidence 631 133444566665544 44555554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=9e-05 Score=75.08 Aligned_cols=117 Identities=9% Similarity=0.103 Sum_probs=82.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-C-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK-G-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++||||+|..|...+..++.- . -+|.+|||++++.++|.++.....+..+.+++++++++.. +|+|+.++++..
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~---aDIV~taT~s~~ 194 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD---ADTITSITNSDT 194 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEecCCCC
Confidence 4799999999999998888753 2 3799999999999998766432101247788999999988 999999999875
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
+ +++ ...+++|..|.-.++..|...+--.+.+.....-|+|.
T Consensus 195 P---~~~--~~~l~pg~hV~aiGs~~p~~~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 195 P---IFN--RKYLGDEYHVNLAGSNYPNRREAEHSVLNDADIVVTEH 236 (301)
T ss_pred c---Eec--HHHcCCCceEEecCCCCCCcccCCHHHHHhCCEEEECC
Confidence 3 331 12467888888887766643322223333333446663
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.3e-05 Score=75.88 Aligned_cols=116 Identities=13% Similarity=0.089 Sum_probs=80.0
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|+|||+|.+|...+..++. .+ -+|.+|||++++.+++.+......+..+..+.+.++++.. +|+|+.++|...
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDiVi~aT~s~~ 204 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEE---ADIIVTVTNAKT 204 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEccCCCC
Confidence 479999999999998887763 34 4799999999999888764321100134567888888876 999999999874
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
. ++. ..+++|..|+..++..|...+--...+..-..-|+|.
T Consensus 205 p---~i~---~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~ 245 (325)
T PRK08618 205 P---VFS---EKLKKGVHINAVGSFMPDMQELPSEAIARANKVVVES 245 (325)
T ss_pred c---chH---HhcCCCcEEEecCCCCcccccCCHHHHhhCCEEEECC
Confidence 3 443 4578999999888876644332223333322235554
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00013 Score=74.03 Aligned_cols=87 Identities=10% Similarity=0.218 Sum_probs=60.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCCh-HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+.||+|||+|.||..++..+.++ ++++. ++++++ ++.. +.. ++....+..++.. ++|+|++|+|+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~---~~~------~v~~~~d~~e~l~---~iDVViIctPs 70 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD---TET------PVYAVADDEKHLD---DVDVLILCMGS 70 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh---hcC------CccccCCHHHhcc---CCCEEEEcCCC
Confidence 36999999999999999999876 78876 579985 4322 111 2333445555544 49999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
....+ .+.+.|..|.-+||+.-
T Consensus 71 ~th~~----~~~~~L~aG~NVV~s~~ 92 (324)
T TIGR01921 71 ATDIP----EQAPYFAQFANTVDSFD 92 (324)
T ss_pred ccCHH----HHHHHHHcCCCEEECCC
Confidence 76543 34445667788888754
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.1e-05 Score=67.51 Aligned_cols=91 Identities=11% Similarity=0.121 Sum_probs=62.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++.|+|.|..|+++|+.|...|-+|+|++++|-+.-+....+ ++. .+.++++.. +|+||.++-....+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dG-------f~v-~~~~~a~~~---adi~vtaTG~~~vi 92 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDG-------FEV-MTLEEALRD---ADIFVTATGNKDVI 92 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT--------EE-E-HHHHTTT----SEEEE-SSSSSSB
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcC-------cEe-cCHHHHHhh---CCEEEECCCCcccc
Confidence 4699999999999999999999999999999997765555443 444 367887776 99999887664322
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
. .+..+.+++|.++.+.+....
T Consensus 93 ~---~e~~~~mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 93 T---GEHFRQMKDGAILANAGHFDV 114 (162)
T ss_dssp ----HHHHHHS-TTEEEEESSSSTT
T ss_pred C---HHHHHHhcCCeEEeccCcCce
Confidence 2 344556889999999887643
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.6e-05 Score=79.14 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=63.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|+|||+|.||..++..|...| .+|+++||++++.+.+.+.... ......++.+.+.. +|+||.|++.+..
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~----~~i~~~~l~~~l~~---aDvVi~aT~s~~~ 253 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG----EAVKFEDLEEYLAE---ADIVISSTGAPHP 253 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----eEeeHHHHHHHHhh---CCEEEECCCCCCc
Confidence 57999999999999999999999 7899999999988877764321 11222344455554 9999999877654
Q ss_pred HH--HHHHHHHhcCCCCcEEEecC
Q 010637 86 VD--QTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 86 v~--~vl~~l~~~l~~g~iIId~s 107 (505)
+- +.+......-..+.+++|.+
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeC
Confidence 31 12222211111234788886
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00015 Score=77.07 Aligned_cols=89 Identities=12% Similarity=0.040 Sum_probs=69.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|||+|.+|..+|..|...|.+|+++++++.+.......+ +. ..+++++++. +|+|++++..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G-------~~-~~~leell~~---ADIVI~atGt---- 319 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEG-------YQ-VVTLEDVVET---ADIFVTATGN---- 319 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcC-------ce-eccHHHHHhc---CCEEEECCCc----
Confidence 4799999999999999999999999999999987754433322 33 2467787776 9999998643
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~ 110 (505)
..++ .+....+++|.++++.+...
T Consensus 320 ~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 320 KDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred ccccCHHHHhccCCCcEEEEcCCCc
Confidence 3455 36677789999999998873
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00025 Score=71.11 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=74.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CC-----cEEEEeCChH------HHHHHHH-hhcccCCC-------CeeeeCCHHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GF-----PISVYNRTTS------KVDETLD-RAHREGQL-------PLTGHYTPRD 65 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~-----~V~v~dr~~~------~~~~l~~-~~~~~g~~-------~i~~~~s~~e 65 (505)
.||+|||.|++|+.+|+.+.++ ++ +|..|-+..+ ++.+... .+.+..++ ++...+++.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 5799999999999999998864 22 5777754432 2222221 11111011 6777888888
Q ss_pred HHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 66 FVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 66 ~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
++.+ +|++|..+|. +.+..++++|..+++++...|.++.+..
T Consensus 102 a~~d---ADilvf~vPh-Qf~~~ic~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 102 AAKD---ADILVFVVPH-QFIPRICEQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred Hhcc---CCEEEEeCCh-hhHHHHHHHHhcccCCCCeEEEeeccee
Confidence 8876 9999999999 5899999999999999999999887754
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00012 Score=74.37 Aligned_cols=96 Identities=14% Similarity=0.037 Sum_probs=73.8
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|+|||+|.+|...+..+.. .+ .+|.+|||++++.+++.++....+ ..+. +.+.++++.+ +|+|+.++|...
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~-~~~~-~~~~~~av~~---aDiVitaT~s~~ 200 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG-PTAE-PLDGEAIPEA---VDLVVTATTSRT 200 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC-CeeE-ECCHHHHhhc---CCEEEEccCCCC
Confidence 579999999999999999975 55 469999999999999887643211 1223 5788888877 999999999875
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchh
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLN 113 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~ 113 (505)
+ ++.. .+++|..|.-.++..|..
T Consensus 201 P---l~~~---~~~~g~hi~~iGs~~p~~ 223 (304)
T PRK07340 201 P---VYPE---AARAGRLVVAVGAFTPDM 223 (304)
T ss_pred c---eeCc---cCCCCCEEEecCCCCCCc
Confidence 4 3432 368999999888776643
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.4e-05 Score=77.91 Aligned_cols=98 Identities=16% Similarity=0.226 Sum_probs=69.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCee-eeCCHHHHHhhcCCCcEEEEEcCC-Cc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLT-GHYTPRDFVLSIQRPRSVIILVKA-GS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~-~~~s~~e~v~~l~~advIil~vp~-~~ 84 (505)
.+|.|||+|.+|...+..+...|.+|.++||++++.+.+...... .+. ...+.+++.+.++.+|+||.+++. +.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----RIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----eeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 469999999999999999999999999999999988777654321 111 123445555555569999999743 11
Q ss_pred hHHHHH-HHHHhcCCCCcEEEecCC
Q 010637 85 PVDQTI-AALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl-~~l~~~l~~g~iIId~st 108 (505)
....++ .+....++++.+|||.+.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEec
Confidence 111222 455566789999999764
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0001 Score=74.75 Aligned_cols=101 Identities=19% Similarity=0.174 Sum_probs=63.4
Q ss_pred EEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHH----HHhhcccC-CCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 9 IGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDET----LDRAHREG-QLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 9 IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l----~~~~~~~g-~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|||+|.||..+|..|+.+|+ +|.++|+++++.+.. .......+ ..+++...+.+++ . .+|+||+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l-~---dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDI-A---GSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHh-C---CCCEEEEecCC
Confidence 6899999999999999998887 999999998764321 11110000 0134444565543 3 39999998732
Q ss_pred C---------------chHHHHHHHHHhcCCCCcEEEecCCCCchhH
Q 010637 83 G---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 83 ~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (505)
+ ..+++++..+.+.. +..++|..||-....+
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~di~t 122 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLDVMT 122 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHH
Confidence 1 11334446666655 5567677776543333
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00021 Score=70.24 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=76.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC---CcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG---FPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G---~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+||||||+|.||..++..|.+.+ +++ .+++|++++.+++.+. ...+.++++++.. ++|+|+.|-.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------~~~~~~l~~ll~~--~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------VALLDGLPGLLAW--RPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------CcccCCHHHHhhc--CCCEEEECCC
Confidence 468999999999999999987642 544 4789998888777653 3578899997432 3999999987
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchh--HHH-HHHHHHHCC-CeEEeCCCCCCHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN--TER-RIHEASQKG-LLYLGMGVSGGEE 138 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~--t~~-~~~~l~~~g-i~~i~~pvsGg~~ 138 (505)
. .++++....++ ..|.-++-.|.+-..| ..+ +.+..++.| -.|+.++-.||-.
T Consensus 72 ~-~av~e~~~~iL---~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD 128 (267)
T PRK13301 72 Q-QAIAEHAEGCL---TAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLD 128 (267)
T ss_pred H-HHHHHHHHHHH---hcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHH
Confidence 6 36666665554 4454344444443333 333 333333333 3456666555543
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=6e-05 Score=80.11 Aligned_cols=94 Identities=20% Similarity=0.190 Sum_probs=64.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|+|||+|.||..++..|...|. +|+++||++++.+.+.+.... .+....+..+.+. .+|+||.+++.+..
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~---~aDvVI~aT~s~~~ 255 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG----EAIPLDELPEALA---EADIVISSTGAPHP 255 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC----cEeeHHHHHHHhc---cCCEEEECCCCCCc
Confidence 579999999999999999999997 799999999998877765321 1222233334444 49999999987654
Q ss_pred HHHHHHHHHhcC----CCCcEEEecCC
Q 010637 86 VDQTIAALSEHM----SPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l----~~g~iIId~st 108 (505)
+-. -+.+.+.+ ..+.++||.+.
T Consensus 256 ~i~-~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 256 IIG-KGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EEc-HHHHHHHHhhccCCCeEEEEeCC
Confidence 321 12222222 24568889864
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0002 Score=75.13 Aligned_cols=100 Identities=15% Similarity=0.098 Sum_probs=74.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.+|..+|..+...|.+|.++|+++.+.......+ +.. .+.++++.. +|+||.++..
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G-------~~v-~~leeal~~---aDVVItaTG~---- 260 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDG-------FRV-MTMEEAAKI---GDIFITATGN---- 260 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcC-------CEe-CCHHHHHhc---CCEEEECCCC----
Confidence 4799999999999999999999999999999998765544332 333 356676665 9999987654
Q ss_pred HHHHH-HHHhcCCCCcEEEecCCCCc-hhHHHHHHHH
Q 010637 87 DQTIA-ALSEHMSPGDCIIDGGNEWY-LNTERRIHEA 121 (505)
Q Consensus 87 ~~vl~-~l~~~l~~g~iIId~st~~~-~~t~~~~~~l 121 (505)
..+++ .....+++|.++++.+.... -+...+.+.+
T Consensus 261 ~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 261 KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELA 297 (406)
T ss_pred HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence 34453 46678899999999888654 4445554443
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.001 Score=68.34 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=70.0
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++|+|||+|.+|...+..|+. .+ .+|.+|+|++++.+.+.++.....+..+..+.++++++.. +|+|+.++|...
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~---aDiVi~aT~s~~ 209 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAG---ADIIVTTTPSEE 209 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHcc---CCEEEEeeCCCC
Confidence 579999999999998888875 44 5799999999999998875422100134567888888876 999999998864
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+ ++.. ..+++|..|...+...
T Consensus 210 p---~i~~--~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 210 P---ILKA--EWLHPGLHVTAMGSDA 230 (330)
T ss_pred c---EecH--HHcCCCceEEeeCCCC
Confidence 3 3322 1256787777765543
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00018 Score=73.30 Aligned_cols=97 Identities=16% Similarity=0.268 Sum_probs=74.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|.++...++.+..- --+|.+|||++++.+.|.+.....+ ..+.++++.++++.. +|+|+.++++..
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~-~~v~~~~~~~~av~~---ADIV~taT~s~~ 204 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALG-FAVNTTLDAAEVAHA---ANLIVTTTPSRE 204 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcC-CcEEEECCHHHHhcC---CCEEEEecCCCC
Confidence 4799999999999998887753 3479999999999998876543221 357778999999987 999999998875
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
+ +++. ..+++|..|+-.++..|.
T Consensus 205 P---~~~~--~~l~~G~hi~~iGs~~p~ 227 (315)
T PRK06823 205 P---LLQA--EDIQPGTHITAVGADSPG 227 (315)
T ss_pred c---eeCH--HHcCCCcEEEecCCCCcc
Confidence 3 3321 246799999988876663
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0002 Score=76.03 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=54.6
Q ss_pred CcEEEEcccHHHHHHHH--HH----HhCCCcEEEEeCChHHHHHHHHhhcc----cC-CCCeeeeCCHHHHHhhcCCCcE
Q 010637 7 SRIGLAGLAVMGQNLAL--NV----AEKGFPISVYNRTTSKVDETLDRAHR----EG-QLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~--~L----a~~G~~V~v~dr~~~~~~~l~~~~~~----~g-~~~i~~~~s~~e~v~~l~~adv 75 (505)
+||+|||.|.||.+++. .+ +.+|++|.+||+++++++........ .+ ..++..++++++.++. +|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~---AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG---ADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC---CCE
Confidence 47999999999998766 34 45688999999999887665432110 00 0146778888888777 999
Q ss_pred EEEEcCCC
Q 010637 76 VIILVKAG 83 (505)
Q Consensus 76 Iil~vp~~ 83 (505)
||++++.+
T Consensus 78 Vi~ai~~~ 85 (423)
T cd05297 78 VINTIQVG 85 (423)
T ss_pred EEEeeEec
Confidence 99999864
|
linked to 3D####ucture |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00026 Score=70.49 Aligned_cols=119 Identities=15% Similarity=0.161 Sum_probs=73.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCCh--HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTT--SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~--~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|+||||||+|.||+.++..+.+. +.++. +++++. ++....... ++..+++++++ . .++|+|+.|.|
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~-------~~~~~~d~~~l-~--~~~DvVve~t~ 70 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGE-------AVRVVSSVDAL-P--QRPDLVVECAG 70 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhcc-------CCeeeCCHHHh-c--cCCCEEEECCC
Confidence 36999999999999999999876 45554 444432 222221111 25677888887 3 34899999998
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCC---CchhHHHHHHHHHHCCCe-EEeCCCCCCHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNE---WYLNTERRIHEASQKGLL-YLGMGVSGGEE 138 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~---~~~~t~~~~~~l~~~gi~-~i~~pvsGg~~ 138 (505)
.. ...+..... |..|.-++..+.. ......++.+..++.|.. |+..+..|+..
T Consensus 71 ~~-~~~e~~~~a---L~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d 127 (265)
T PRK13303 71 HA-ALKEHVVPI---LKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGID 127 (265)
T ss_pred HH-HHHHHHHHH---HHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHH
Confidence 85 444444433 4456655555554 232344556666666754 45555556543
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00017 Score=73.98 Aligned_cols=96 Identities=13% Similarity=0.229 Sum_probs=70.8
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVA-EKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La-~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|.+|...+..|+ ..+. +|.+|+|++++.+++.+......+..+...+++++++.. +|+|+.++|...
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~---aDiVvtaT~s~~ 206 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSG---ADIIVTTTPSET 206 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhcc---CCEEEEecCCCC
Confidence 47999999999999999997 4664 699999999999988765421100135567888888876 999999998864
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+ ++. ...+++|..|...+.-.
T Consensus 207 p---~i~--~~~l~~g~~i~~vg~~~ 227 (326)
T TIGR02992 207 P---ILH--AEWLEPGQHVTAMGSDA 227 (326)
T ss_pred c---Eec--HHHcCCCcEEEeeCCCC
Confidence 3 332 12367888887766543
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00048 Score=59.14 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=70.2
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcCCCchH
Q 010637 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 9 IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~~v 86 (505)
|-|+|.|.+|..++..|.+.+.+|.+.|+++++++.+.+.+..- +.+..+-.+..+ .+++++.|+++.+++...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~----i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEV----IYGDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEE----EES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccc----ccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 46899999999999999997779999999999999988776321 222222223333 355799999999886433
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
-.++..+....+...+++-..+. ...+.++..|+..+
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~~~------~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVNDP------ENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEESSH------HHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHCCCCeEEEEECCH------HHHHHHHHCCcCEE
Confidence 33334444434444566554332 23444555666544
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=9.6e-05 Score=74.10 Aligned_cols=116 Identities=18% Similarity=0.121 Sum_probs=76.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|+|+|.+|++++..|+..| .+|+++||+.++.+++.+.....+ .+....+..+. +..+|+||-++|.+..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~--~~~~~~~~~~~---~~~~DivInaTp~g~~ 198 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG--KAELDLELQEE---LADFDLIINATSAGMS 198 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ceeecccchhc---cccCCEEEECCcCCCC
Confidence 47999999999999999999999 789999999999888876532110 01221122233 3349999999998742
Q ss_pred HHH-HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 86 VDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 86 v~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
-.. ...-....++++.+++|..- .|..| .+.+..+++|...+
T Consensus 199 ~~~~~~~~~~~~l~~~~~v~DivY-~P~~T-~ll~~A~~~G~~~~ 241 (278)
T PRK00258 199 GELPLPPLPLSLLRPGTIVYDMIY-GPLPT-PFLAWAKAQGARTI 241 (278)
T ss_pred CCCCCCCCCHHHcCCCCEEEEeec-CCCCC-HHHHHHHHCcCeec
Confidence 100 00001134677899999866 34444 45556677776554
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00022 Score=63.91 Aligned_cols=122 Identities=19% Similarity=0.255 Sum_probs=76.5
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|.|||+|.+|..++.+|+..|+ +++++|.+.-....+..+... ....+-.-+....+.+..+. +++-+.+.+....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCcEEEEEeeecC
Confidence 58999999999999999999998 699999875433333221100 00000111222333333322 5666666654321
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-.. ....+.+-++||+++.. +.....+.+.+.+.++.|++++..|
T Consensus 80 ~~~----~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 80 EDN----LDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hhh----HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 111 13445678999999887 4556667788888899999988776
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00052 Score=79.55 Aligned_cols=121 Identities=13% Similarity=0.091 Sum_probs=85.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-Cc-------------EEEEeCChHHHHHHHHhhcccCCCCeee-eCCHHHHHhhc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-FP-------------ISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-~~-------------V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~v~~l 70 (505)
+++|+|||+|.||...+..|++.. ++ |.+.|+++++.+++.+..... ..+.. +.+.+++.+.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~--~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA--EAVQLDVSDSESLLKYV 646 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCC--ceEEeecCCHHHHHHhh
Confidence 468999999999999999999763 33 899999999988877643110 01344 56778887756
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCC
Q 010637 71 QRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGV 133 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pv 133 (505)
+.+|+||+|+|.... ..++.. .+..|.-+++.+ ....++.++.+..++.|+.++. ++.
T Consensus 647 ~~~DaVIsalP~~~H-~~VAka---AieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~e~Gl 705 (1042)
T PLN02819 647 SQVDVVISLLPASCH-AVVAKA---CIELKKHLVTAS-YVSEEMSALDSKAKEAGITILCEMGL 705 (1042)
T ss_pred cCCCEEEECCCchhh-HHHHHH---HHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEECCcc
Confidence 679999999999643 333332 345677788877 4455667777777888887653 443
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0011 Score=67.70 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=85.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..++|||+|.++......+..- .-+|.+|+|+++..+++.......+...+..+.|.+++++. +|+|+.++|+..
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~---aDiIvt~T~s~~ 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG---ADIVVTATPSTE 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc---CCEEEEecCCCC
Confidence 4699999999999998888753 34799999999999988865433321136788999999998 999999999975
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
.++. ...+++|..|.-.++-.|...+--.+.+...+.-|+|.+
T Consensus 208 ---Pil~--~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 208 ---PVLK--AEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL 250 (330)
T ss_pred ---Ceec--HhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence 3332 234779999888887655444333334444346677754
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00044 Score=69.45 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=77.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||+|-+|++++..|++.|. +|+++||++++.+++.+...... .+......+++...+..+|+||-++|.+..
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~--~~~~~~~~~~~~~~~~~~DiVInaTp~g~~ 203 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVG--VITRLEGDSGGLAIEKAAEVLVSTVPADVP 203 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcC--cceeccchhhhhhcccCCCEEEECCCCCCC
Confidence 479999999999999999999997 69999999999998876532110 122223333433333459999999998865
Q ss_pred HHHH-HHHHH-----hcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 86 VDQT-IAALS-----EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 86 v~~v-l~~l~-----~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
.+.. +.... ..++++.+++|.--.. ..| .+.+..+++|...+
T Consensus 204 ~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~ 251 (282)
T TIGR01809 204 ADYVDLFATVPFLLLKRKSSEGIFLDAAYDP-WPT-PLVAIVSAAGWRVI 251 (282)
T ss_pred CCHHHhhhhhhhhccccCCCCcEEEEEeeCC-CCC-HHHHHHHHCCCEEE
Confidence 4321 11111 1234678899986433 333 44555566666544
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00036 Score=65.93 Aligned_cols=102 Identities=15% Similarity=0.055 Sum_probs=68.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~ 82 (505)
.+++.|+|. |.+|..++..|++.|++|.+++|+.++.+.+.+......+..+.. ..+.+++.+.++.+|+||.+.|.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~ 107 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAA 107 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCC
Confidence 357999995 999999999999999999999999998887765421100001222 23455444444559999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.. ..........++.+++|..-..
T Consensus 108 g~~---~~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 108 GVE---LLEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred Cce---echhhhcccCceeEEEEccCCC
Confidence 753 1111222344578999985544
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00041 Score=70.97 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=67.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.+||+|||+|.||..+|..++..| .+|.++|+++++.+...- .... .+ ..+++...+++++ .+ +|+||++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l-~~---ADiVVit 80 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDI-KD---SDVVVIT 80 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHh-CC---CCEEEEC
Confidence 468999999999999999999999 689999999875432111 0000 00 0134444666644 44 9999999
Q ss_pred c--CCC-------------chHHHHHHHHHhcCCCCcEEEecCCCCchhH
Q 010637 80 V--KAG-------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 80 v--p~~-------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (505)
. |.. ..++++.+.+.++. +..++|..||.....+
T Consensus 81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~di~t 129 (319)
T PTZ00117 81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPLDCMV 129 (319)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHHHHH
Confidence 8 321 22445556666654 6667777777543333
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00029 Score=74.34 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=69.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.+|..+|..|...|.+|+++|+++.+.......+ +. ..+++++++. +|+||.++..
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G-------~~-v~~l~eal~~---aDVVI~aTG~---- 277 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDG-------FR-VMTMEEAAEL---GDIFVTATGN---- 277 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcC-------CE-ecCHHHHHhC---CCEEEECCCC----
Confidence 4799999999999999999999999999999998765544332 33 2367777765 9999988744
Q ss_pred HHHHH-HHHhcCCCCcEEEecCCCCc
Q 010637 87 DQTIA-ALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 87 ~~vl~-~l~~~l~~g~iIId~st~~~ 111 (505)
..+++ .....+++|.++++.+....
T Consensus 278 ~~vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 278 KDVITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 33453 56677899999999887653
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00032 Score=69.45 Aligned_cols=92 Identities=13% Similarity=0.187 Sum_probs=63.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++||+|||+ |.||+.++..+.+. +++|. ++|+++++.... .. .++...++++++.+. +|+|+.++|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-~~------~~i~~~~dl~~ll~~---~DvVid~t~p 70 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-GA------LGVAITDDLEAVLAD---ADVLIDFTTP 70 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-CC------CCccccCCHHHhccC---CCEEEECCCH
Confidence 368999998 99999999988864 67765 589988765443 11 135567888888764 9999988876
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
. ...+++.. .+..|.-++..+|+..
T Consensus 71 ~-~~~~~~~~---al~~G~~vvigttG~s 95 (257)
T PRK00048 71 E-ATLENLEF---ALEHGKPLVIGTTGFT 95 (257)
T ss_pred H-HHHHHHHH---HHHcCCCEEEECCCCC
Confidence 4 34444433 3445665665565543
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00037 Score=73.87 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=70.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.+|..+|..+...|.+|.++++++.+.......+ +.. .+.++++.. +|+||.+....
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G-------~~v-v~leEal~~---ADVVI~tTGt~--- 320 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG-------YQV-LTLEDVVSE---ADIFVTTTGNK--- 320 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC-------Cee-ccHHHHHhh---CCEEEECCCCc---
Confidence 4799999999999999999999999999999987754444332 232 367777766 99999865442
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCC-CchhHHHH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNE-WYLNTERR 117 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~-~~~~t~~~ 117 (505)
.++ ......+++|.++++.+.. ..-+...+
T Consensus 321 -~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL 352 (477)
T PLN02494 321 -DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGL 352 (477)
T ss_pred -cchHHHHHhcCCCCCEEEEcCCCCCccCHHHH
Confidence 333 5566779999999999884 33334333
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00034 Score=73.09 Aligned_cols=95 Identities=20% Similarity=0.237 Sum_probs=67.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..++.|||+|-||.-.|.+|+++| .+|++.||+.+++.+++++... -+.+++++.+.|..+|+||.++.+..
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~-------~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA-------EAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC-------eeecHHHHHHhhhhCCEEEEecCCCc
Confidence 357999999999999999999999 6899999999999999886531 13355555555556999999986654
Q ss_pred hH--HHHHHHHHhcCCCCcEEEecCC
Q 010637 85 PV--DQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v--~~vl~~l~~~l~~g~iIId~st 108 (505)
.+ +..++..... .+.-++||.+.
T Consensus 251 ~ii~~~~ve~a~~~-r~~~livDiav 275 (414)
T COG0373 251 PIITREMVERALKI-RKRLLIVDIAV 275 (414)
T ss_pred cccCHHHHHHHHhc-ccCeEEEEecC
Confidence 32 1222222211 12258888865
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00018 Score=72.35 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=76.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|.|||+|-+|++++..|+..|. +|+++||+.++.+.+.+..... ....+....+..+.+. .+|+||.++|.+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~---~aDiVInaTp~Gm 204 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALA---AADGLVHATPTGM 204 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhC---CCCEEEECCcCCC
Confidence 479999999999999999999997 7999999999998887643211 0001222233333333 4999999998773
Q ss_pred hHHH--HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 85 PVDQ--TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v~~--vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.-.. -++ ...++++.+++|..-... .| .+.+..+++|...++
T Consensus 205 ~~~~~~~~~--~~~l~~~~~v~DivY~P~-~T-~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 205 AKHPGLPLP--AELLRPGLWVADIVYFPL-ET-ELLRAARALGCRTLD 248 (284)
T ss_pred CCCCCCCCC--HHHcCCCcEEEEeeeCCC-CC-HHHHHHHHCCCeEec
Confidence 2110 011 123677889999876543 34 455566677765543
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00066 Score=69.00 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=64.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChHHHHHHHHhhcc----cCCCCee-eeCCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHR----EGQLPLT-GHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~~~----~g~~~i~-~~~s~~e~v~~l~~advIil~ 79 (505)
+||+|||+|.+|..+|..|+..| ++|.++|+++++++.+...... .+ .+.. ...+.+++ . .+|+||++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~-~~~~i~~~~~~~l-~---~aDIVIit 75 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLP-SPVKIKAGDYSDC-K---DADIVVIT 75 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccC-CCeEEEcCCHHHh-C---CCCEEEEc
Confidence 37999999999999999999999 6899999999887665543210 00 0112 23444443 3 39999999
Q ss_pred cCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.... .++++.+.+.++- +..+||..||-.
T Consensus 76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP~ 120 (306)
T cd05291 76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNPV 120 (306)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecChH
Confidence 85521 1344445555544 456777777643
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00074 Score=74.43 Aligned_cols=116 Identities=18% Similarity=0.296 Sum_probs=77.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~ 84 (505)
-+|-|+|+|.+|+.+|+.|.++|++|.+.|.|+++++++.+.+.. -+....+.+++.+ .++++|.++++++++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~----~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~ 493 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIR----AVLGNAANEEIMQLAHLDCARWLLLTIPNGY 493 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCe----EEEcCCCCHHHHHhcCccccCEEEEEcCChH
Confidence 468899999999999999999999999999999999998865432 1233333344443 3557999999999875
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
....++..+....+.-.+|.-..+ + +..+.+++.|+.++=.|
T Consensus 494 ~~~~iv~~~~~~~~~~~iiar~~~--~----~~~~~l~~~Gad~vv~p 535 (558)
T PRK10669 494 EAGEIVASAREKRPDIEIIARAHY--D----DEVAYITERGANQVVMG 535 (558)
T ss_pred HHHHHHHHHHHHCCCCeEEEEECC--H----HHHHHHHHcCCCEEECh
Confidence 544454444443333344443321 1 33344556687776544
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.001 Score=69.76 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=78.1
Q ss_pred EEEEcccHHHHHHHHHHHhCC-C-cEEEEeCChHHHHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCcEEEEEcCC
Q 010637 9 IGLAGLAVMGQNLALNVAEKG-F-PISVYNRTTSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 9 IgIIGlG~MG~~lA~~La~~G-~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~----~~s~~e~v~~l~~advIil~vp~ 82 (505)
|.|+|.|.+|+.++..|++++ + +|++.||+.++.+++.+..... ++.. ..+.+++.+-++.+|+||.|+|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGD---RVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTT---TEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcccc---ceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999999999999999987 4 8999999999998887631100 1221 23455555555569999999987
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE-eCCCCCCHH
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEE 138 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsGg~~ 138 (505)
. ....+++.. +..|.-+||.+. .......+.+..++.|+.++ +++...|..
T Consensus 78 ~-~~~~v~~~~---i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 78 F-FGEPVARAC---IEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp G-GHHHHHHHH---HHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTBHH
T ss_pred c-hhHHHHHHH---HHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccchH
Confidence 5 445555443 345788999332 24445555666677787665 467666654
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00094 Score=68.45 Aligned_cols=113 Identities=15% Similarity=0.210 Sum_probs=78.0
Q ss_pred CCCcEEEEccc-HHHHHHHHHHHhCCC---cEEEEeCChHHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEE
Q 010637 5 ALSRIGLAGLA-VMGQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 5 ~~~~IgIIGlG-~MG~~lA~~La~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~ 79 (505)
+++||||||+| .++...+..+.+.+. -|.++|+++++.+++.++.. + ..++|++++++. ...|+|+++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~------~~~~~~~~~~ll~~-~~iD~V~Ia 74 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG------IAKAYTDLEELLAD-PDIDAVYIA 74 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEEc
Confidence 35699999998 455668888888763 46688999999998887643 3 478899999886 225999999
Q ss_pred cCCCchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeE
Q 010637 80 VKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+|+....+-++..| ..|+ ++++- =+....+.+++.+..+++|..+
T Consensus 75 tp~~~H~e~~~~AL----~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l 121 (342)
T COG0673 75 TPNALHAELALAAL----EAGKHVLCEKPLALTLEEAEELVELARKAGVKL 121 (342)
T ss_pred CCChhhHHHHHHHH----hcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence 99987766554443 4454 44431 1223456666666666666543
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0013 Score=73.19 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=80.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~ 84 (505)
.+|-|+|.|.+|+.+++.|.++|+++++.|.|+++++.+.+.+.. -+....+-.++.+ .++++|.+++++++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~----v~~GDat~~~~L~~agi~~A~~vvv~~~d~~ 476 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMK----VFYGDATRMDLLESAGAAKAEVLINAIDDPQ 476 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCe----EEEEeCCCHHHHHhcCCCcCCEEEEEeCCHH
Confidence 579999999999999999999999999999999999998775432 1333334445553 4668999999998876
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGV 133 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pv 133 (505)
....++..+....+.-.+++-..+ .+....+.+.|+..+....
T Consensus 477 ~n~~i~~~ar~~~p~~~iiaRa~d------~~~~~~L~~~Gad~v~~e~ 519 (621)
T PRK03562 477 TSLQLVELVKEHFPHLQIIARARD------VDHYIRLRQAGVEKPERET 519 (621)
T ss_pred HHHHHHHHHHHhCCCCeEEEEECC------HHHHHHHHHCCCCEEehhh
Confidence 555555444443333345543322 2334556667887765443
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00085 Score=66.82 Aligned_cols=116 Identities=14% Similarity=0.176 Sum_probs=67.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHh-CCCcEE-EEeCC-hHHHH-HHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAG-LAVMGQNLALNVAE-KGFPIS-VYNRT-TSKVD-ETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~-~G~~V~-v~dr~-~~~~~-~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+||+|+| +|.||+.++..+.+ .++++. ++||. +++.. .+.+..... ..++..+++++++.. .+|+||.+.|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l~~---~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAVET---DPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHhcC---CCCEEEECCC
Confidence 6999999 69999999999986 477765 57854 32211 111110000 013566788888833 3899999997
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCc-hhHHHHHHHHHHCCCeEEe
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWY-LNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~-~~t~~~~~~l~~~gi~~i~ 130 (505)
+. ...+.+.. .+..|.-++..+++.. ....++.+..++.|+.++-
T Consensus 78 p~-~~~~~~~~---al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~ 123 (266)
T TIGR00036 78 PE-GVLNHLKF---ALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVI 123 (266)
T ss_pred hH-HHHHHHHH---HHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEE
Confidence 74 44444433 3445665655555543 3333444444554554443
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=73.60 Aligned_cols=113 Identities=14% Similarity=0.210 Sum_probs=79.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~ 84 (505)
.+|-|+|.|.+|+.+++.|.++|+++.+.|.|+++++.+.+.+.. -+.+..+-.++.+ .++++|.++++++++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~----v~~GDat~~~~L~~agi~~A~~vv~~~~d~~ 476 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYK----VYYGDATQLELLRAAGAEKAEAIVITCNEPE 476 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCe----EEEeeCCCHHHHHhcCCccCCEEEEEeCCHH
Confidence 579999999999999999999999999999999999988775432 1333334445544 3567999999999976
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
....++..+....+.-.+++-+.+ ....+.+.+.|+..+
T Consensus 477 ~n~~i~~~~r~~~p~~~IiaRa~~------~~~~~~L~~~Ga~~v 515 (601)
T PRK03659 477 DTMKIVELCQQHFPHLHILARARG------RVEAHELLQAGVTQF 515 (601)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCC------HHHHHHHHhCCCCEE
Confidence 555555555544433455554333 233455566677655
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00046 Score=70.80 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=71.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-C-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK-G-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|||||+|.+|...+..|... + ..|.+|||++++.+++.++....-+..+..+++.+++++ +|+|++|+|+..
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~----aDiVv~aTps~~ 205 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD----CDILVTTTPSRK 205 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh----CCEEEEecCCCC
Confidence 4799999999999999999843 3 368899999999988876532110013556788888874 899999999865
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
+ +++ ...+++|..|...++..|.
T Consensus 206 P---~~~--~~~l~~g~hV~~iGs~~p~ 228 (326)
T PRK06046 206 P---VVK--AEWIKEGTHINAIGADAPG 228 (326)
T ss_pred c---Eec--HHHcCCCCEEEecCCCCCc
Confidence 3 332 1246789998888876653
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=68.21 Aligned_cols=110 Identities=13% Similarity=0.160 Sum_probs=76.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
..||||||+ .||...+..+.+. ++++. ++|+++++.+++.++. ++..+++.+++.+. .|++++++|+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~------gi~~y~~~eell~d---~Di~~V~ipt 72 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL------GVPLYCEVEELPDD---IDIACVVVRS 72 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh------CCCccCCHHHHhcC---CCEEEEEeCC
Confidence 358999999 6899999999875 46655 7899999999888764 35578999999876 8888888864
Q ss_pred ----CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 83 ----GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ----~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
+...+-+ .. .+..|.-|+----....+.+++.+..+++|+.+.
T Consensus 73 ~~P~~~H~e~a-~~---aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 73 AIVGGQGSALA-RA---LLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CCCCccHHHHH-HH---HHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 2332322 22 3445554443222235677777777778887665
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00059 Score=71.84 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=68.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.+|..++..+...|.+|.++|+++.+.+.....+ +.. .+.++.+.. +|+||.++...
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G-------~~~-~~~~e~v~~---aDVVI~atG~~--- 268 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG-------YEV-MTMEEAVKE---GDIFVTTTGNK--- 268 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC-------CEE-ccHHHHHcC---CCEEEECCCCH---
Confidence 4799999999999999999999999999999999877666543 322 245566654 89999987543
Q ss_pred HHHHH-HHHhcCCCCcEEEecCCC
Q 010637 87 DQTIA-ALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl~-~l~~~l~~g~iIId~st~ 109 (505)
.++. .....+++|.++++.+..
T Consensus 269 -~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 269 -DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred -HHHHHHHHhcCCCCcEEEEeCCC
Confidence 3443 456788999999998854
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00041 Score=70.73 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=65.5
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|..+...+..++. .+ -+|.+|+|++++.++|.+..... +..+..++++++++.. +|+|+.++|+..
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~v~~~~~~~~av~~---aDii~taT~s~~ 204 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDL-GVPVVAVDSAEEAVRG---ADIIVTATPSTT 204 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCC-CTCEEEESSHHHHHTT---SSEEEE----SS
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccc-cccceeccchhhhccc---CCEEEEccCCCC
Confidence 479999999999999888765 33 47999999999999988765432 2367889999999988 999999999876
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
.. .+++ ...+++|..|+..++-.|.
T Consensus 205 ~~-P~~~--~~~l~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 205 PA-PVFD--AEWLKPGTHINAIGSYTPG 229 (313)
T ss_dssp EE-ESB---GGGS-TT-EEEE-S-SSTT
T ss_pred CC-cccc--HHHcCCCcEEEEecCCCCc
Confidence 10 1222 1357899999988876654
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00042 Score=60.42 Aligned_cols=95 Identities=18% Similarity=0.279 Sum_probs=60.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCC-Cc-EEEEeCChHHHHHHHHhhccc-CCCCeeeeC-CHHHHHhhcCCCcEEEEEcCC
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKG-FP-ISVYNRTTSKVDETLDRAHRE-GQLPLTGHY-TPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G-~~-V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~-s~~e~v~~l~~advIil~vp~ 82 (505)
||+||| +|.+|..|.+.|+++- ++ +.++.++.+.-..+....... +...+...+ +.+++ .. +|+||+|+|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-SD---VDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-TT---ESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-hc---CCEEEecCch
Confidence 699999 8999999999999964 34 456677763322233221100 000123333 44444 44 8999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+ ...+....+ +.+|..|||.|+..
T Consensus 77 ~-~~~~~~~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 G-ASKELAPKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp H-HHHHHHHHH---HHTTSEEEESSSTT
T ss_pred h-HHHHHHHHH---hhCCcEEEeCCHHH
Confidence 5 456565555 45788999999875
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00061 Score=67.67 Aligned_cols=105 Identities=18% Similarity=0.202 Sum_probs=68.3
Q ss_pred EEEEcc-cHHHHHHHHHHHhCC----CcEEEEeCChHHHHHHHHhhc---cc-CCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 9 IGLAGL-AVMGQNLALNVAEKG----FPISVYNRTTSKVDETLDRAH---RE-GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 9 IgIIGl-G~MG~~lA~~La~~G----~~V~v~dr~~~~~~~l~~~~~---~~-g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|+|||+ |.||..+|..|+..| .+|.+||+++++++....... .. ...+++.++++.+.+++ +|+||++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~---aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD---ADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC---CCEEEEC
Confidence 689999 999999999999999 799999999876554332210 00 00146666676666665 9999996
Q ss_pred cCCC---------------chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHH
Q 010637 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR 117 (505)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~ 117 (505)
.-.+ ..++++.+.+.... ++.++|..||-....+...
T Consensus 78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~~t~~~ 129 (263)
T cd00650 78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVDIITYLV 129 (263)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHH
Confidence 5221 12344445565554 6677777776543333333
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0011 Score=59.49 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=60.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcc---cCCCCeee-eCCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHR---EGQLPLTG-HYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~---~g~~~i~~-~~s~~e~v~~l~~advIil~ 79 (505)
|||+|||+ |.+|..+|..|...+. ++.++|+++++++.......+ .-..+... ..+.+++ ++ +|+||++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~-~~---aDivvit 76 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEAL-KD---ADIVVIT 76 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGG-TT---ESEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccccc-cc---ccEEEEe
Confidence 58999999 9999999999998875 799999998766544322110 00001222 2344443 33 9999998
Q ss_pred cCC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 80 VKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.-. +. .++++...+.++- +..+++-.||-
T Consensus 77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNP 120 (141)
T PF00056_consen 77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNP 120 (141)
T ss_dssp TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSS
T ss_pred ccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCc
Confidence 732 11 1333335555555 56677777664
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0003 Score=61.00 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=72.9
Q ss_pred cEEEEc----ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 8 RIGLAG----LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 8 ~IgIIG----lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+|+||| -+.+|.-+..+|.++||+|+..|...+.+ . +...+.+++|.-.. .|++++++|..
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i---------~---G~~~y~sl~e~p~~---iDlavv~~~~~ 66 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI---------L---GIKCYPSLAEIPEP---IDLAVVCVPPD 66 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE---------T---TEE-BSSGGGCSST----SEEEE-S-HH
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE---------C---cEEeeccccCCCCC---CCEEEEEcCHH
Confidence 699999 68999999999999999999988665321 1 46778888883244 89999999985
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
.+.++++++... ..+.+++..+ ...+++.+.+++.|+.+++..
T Consensus 67 -~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 67 -KVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp -HHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEEESS
T ss_pred -HHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEEeCC
Confidence 788888888764 4567777766 355677778888999998754
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00094 Score=68.87 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=72.6
Q ss_pred CcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|..+...++.+.. .-.+|.+|+|++++.++|.+.....+ .++..+++++++++. +|+|+.++++..
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~-~~v~~~~~~~~av~~---ADIIvtaT~S~~ 205 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPG-LRIVACRSVAEAVEG---ADIITTVTADKT 205 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcC-CcEEEeCCHHHHHhc---CCEEEEecCCCC
Confidence 469999999999888776664 23479999999999998886543221 246778999999988 999999997643
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
. ..+++. ..+++|..|.-.++-.|.
T Consensus 206 ~-~Pvl~~--~~lkpG~hV~aIGs~~p~ 230 (346)
T PRK07589 206 N-ATILTD--DMVEPGMHINAVGGDCPG 230 (346)
T ss_pred C-CceecH--HHcCCCcEEEecCCCCCC
Confidence 1 123321 346889888877766553
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0021 Score=66.42 Aligned_cols=110 Identities=17% Similarity=0.175 Sum_probs=70.9
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~-lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+.||||||+|.||.. .+..+... +.+|. ++|+++++.. +... ....+++++++++. ...|+|++++|+
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~ell~~-~~vD~V~I~tp~ 74 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK---ADWP-----TVTVVSEPQHLFND-PNIDLIVIPTPN 74 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH---hhCC-----CCceeCCHHHHhcC-CCCCEEEEcCCc
Confidence 469999999999984 56666554 67765 7899987643 1111 24567899999864 247999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEE-Eec-CCCCchhHHHHHHHHHHCCCeE
Q 010637 83 GSPVDQTIAALSEHMSPGDCI-IDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iI-Id~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
....+.++.. +..|+-| ++- -.....+.+++.+..++.|+.+
T Consensus 75 ~~H~~~~~~a----l~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 75 DTHFPLAKAA----LEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred HHHHHHHHHH----HHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 7655544443 3445544 441 1123345566666666666654
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0016 Score=63.06 Aligned_cols=144 Identities=17% Similarity=0.204 Sum_probs=94.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChHHHHH-HHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDE-TLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~----~V~v~dr~~~~~~~-l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|+||+||.|.|...++..+...|. ++..+-.+...... +... ++..+.+..+.++. +|+++++|+
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~-------g~~~~~~n~~~~~~---s~v~~~svK 70 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEAL-------GVKTVFTNLEVLQA---SDVVFLSVK 70 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcC-------CceeeechHHHHhh---ccceeEeec
Confidence 579999999999999999999985 45555543222222 2322 24455555777776 999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCHHHhhcCCccccCC---CHHHHHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGPSLMPGG---SFEAYNN 157 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~~~a~~G~~im~gg---~~ea~~~ 157 (505)
+. .+..++.++.+.+..++||+.+--+..-.+ +...+. ...+.+- +| -.+.....|.+++.-| ..+..+.
T Consensus 71 p~-~i~~vls~~~~~~~~~~iivS~aaG~tl~~--l~~~l~-~~~rviRvmp--Ntp~~v~eg~sv~~~g~~~~~~D~~l 144 (267)
T KOG3124|consen 71 PQ-VIESVLSEIKPKVSKGKIIVSVAAGKTLSS--LESKLS-PPTRVIRVMP--NTPSVVGEGASVYAIGCHATNEDLEL 144 (267)
T ss_pred ch-hHHHHhhcCccccccceEEEEEeecccHHH--HHHhcC-CCCceEEecC--CChhhhhcCcEEEeeCCCcchhhHHH
Confidence 84 789999888887889999998877654333 333333 1122332 12 1233445555444333 4455678
Q ss_pred HHHHHHHHh
Q 010637 158 IRDILQKVA 166 (505)
Q Consensus 158 v~~ll~~ig 166 (505)
++.+|..+|
T Consensus 145 ~~~ll~~vG 153 (267)
T KOG3124|consen 145 VEELLSAVG 153 (267)
T ss_pred HHHHHHhcC
Confidence 899999988
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00059 Score=70.52 Aligned_cols=101 Identities=16% Similarity=0.104 Sum_probs=60.8
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhC-CCcEEE-EeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEK-GFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~-G~~V~v-~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
||+||+|||+ |.+|..+++.|.++ ++++.. .++. +..+.+.+..............+.++. ....+|+|++|+|
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~vD~Vf~alP 77 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPE--ILAGADVVFLALP 77 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHH--HhcCCCEEEECCC
Confidence 3579999996 99999999999987 677654 5543 222222221110000000012333332 1234899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
++ ...+++..+. ..|..|||.|+.+.-
T Consensus 78 ~~-~~~~~v~~a~---~aG~~VID~S~~fR~ 104 (343)
T PRK00436 78 HG-VSMDLAPQLL---EAGVKVIDLSADFRL 104 (343)
T ss_pred cH-HHHHHHHHHH---hCCCEEEECCcccCC
Confidence 97 4444544443 468999999987744
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00071 Score=62.59 Aligned_cols=74 Identities=19% Similarity=0.333 Sum_probs=56.2
Q ss_pred CcEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVM-GQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~M-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||.|.| |..+|.+|.++|.+|++.+|+.+ ++.+.+.. +|+||.+++...
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~---------------------~l~~~l~~---aDiVIsat~~~~- 99 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK---------------------NLKEHTKQ---ADIVIVAVGKPG- 99 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch---------------------hHHHHHhh---CCEEEEcCCCCc-
Confidence 57999999997 88899999999999999998742 22234444 999999998863
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
++.. ..++++.+|||.+...
T Consensus 100 ---ii~~--~~~~~~~viIDla~pr 119 (168)
T cd01080 100 ---LVKG--DMVKPGAVVIDVGINR 119 (168)
T ss_pred ---eecH--HHccCCeEEEEccCCC
Confidence 2311 1356789999998653
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0019 Score=69.11 Aligned_cols=98 Identities=14% Similarity=0.234 Sum_probs=64.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeee-CCHHHHHhh-cCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLS-IQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~v~~-l~~advIil~vp~~~ 84 (505)
|+|.|+|+|.+|..++..|.+.|++|.++|+++++++.+.+..... -+... .+...+.+. +..+|.||+++++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~---~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~- 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVR---TVVGNGSSPDVLREAGAEDADLLIAVTDSD- 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEE---EEEeCCCCHHHHHHcCCCcCCEEEEecCCh-
Confidence 4799999999999999999999999999999999988876522110 01111 233333222 45699999999885
Q ss_pred hHHHHHHHHHhcC-CCCcEEEecCC
Q 010637 85 PVDQTIAALSEHM-SPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l-~~g~iIId~st 108 (505)
.....+......+ ....+|+...+
T Consensus 77 ~~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 77 ETNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3444443333333 44456665543
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00041 Score=73.33 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=55.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||+|.||..++.+|+..|. +++++||+.++.+.+.+..... .+...+++.+. +..+|+||.|++.+..
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~---~~~~~~~l~~~---l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNA---SAHYLSELPQL---IKKADIIIAAVNVLEY 255 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCC---eEecHHHHHHH---hccCCEEEECcCCCCe
Confidence 579999999999999999999995 7999999999998888753210 12223333344 4449999999988644
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0032 Score=63.66 Aligned_cols=123 Identities=13% Similarity=0.154 Sum_probs=88.2
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHh---CCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAE---KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~---~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
|.+++.-|+||+|+|.|+.-++++|.- .+|.|. +++|+.+++.+|++.+.-. +.+...|.++++++ ...|+|
T Consensus 1 ~~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~---~~k~y~syEeLakd-~~vDvV 76 (351)
T KOG2741|consen 1 VSDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP---NPKAYGSYEELAKD-PEVDVV 76 (351)
T ss_pred CCCCceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC---CCccccCHHHHhcC-CCcCEE
Confidence 566666799999999999999998864 357654 7899999999998875321 35778999999987 234999
Q ss_pred EEEcCCCchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 77 IILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
.+..|.....+-+... +. .|+ ++++- -.......+++.+.++.+|+.|++.
T Consensus 77 yi~~~~~qH~evv~l~-l~---~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 77 YISTPNPQHYEVVMLA-LN---KGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred EeCCCCccHHHHHHHH-HH---cCCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 9999998654433322 22 222 55552 1223456777888888899888764
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0086 Score=57.75 Aligned_cols=176 Identities=11% Similarity=0.147 Sum_probs=102.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCCh----------HHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTT----------SKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~-V~v~dr~~----------~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~ 72 (505)
-++|+|.|+|++|..+|..|.+.|.. |.+.|.+. +.++...+.+... .... ..+.+++.. + .
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~-~-~ 97 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSA---RVKVQDYFPGEAILG-L-D 97 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCcc---ccCcccccCccccee-c-c
Confidence 36899999999999999999999884 56789887 6655544433211 1100 112233432 2 5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCH
Q 010637 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSF 152 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ 152 (505)
+|+++-|.+.+......... + +=++|+...|.... .+..+.|.++|+.|+.--+.. .|..+.
T Consensus 98 ~DVlipaA~~~~i~~~~a~~----l-~a~~V~e~AN~p~t--~~a~~~L~~~Gi~v~Pd~~~N------aGGvi~----- 159 (217)
T cd05211 98 VDIFAPCALGNVIDLENAKK----L-KAKVVAEGANNPTT--DEALRILHERGIVVAPDIVAN------AGGVIV----- 159 (217)
T ss_pred ccEEeeccccCccChhhHhh----c-CccEEEeCCCCCCC--HHHHHHHHHCCcEEEChHHhc------CCCeEe-----
Confidence 89999998876332333233 3 24688888886543 367788899998776422111 111110
Q ss_pred HHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHH
Q 010637 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 153 ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~ 224 (505)
..++.+ +.. ...+|- -.-+.+.+...+.....+.+..+++.+ +++.+...++
T Consensus 160 s~~E~~----q~~-------~~~~w~--------~~~v~~~l~~~m~~~~~~v~~~a~~~~-~~~r~aA~~~ 211 (217)
T cd05211 160 SYFEWV----QNL-------QRLSWD--------AEEVRSKLEQVMTDIHNGVFAISERDG-VTMRAAANIL 211 (217)
T ss_pred EHHHhc----CCc-------cccCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 111111 111 112221 122344455556677788888888888 8877766554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0029 Score=64.61 Aligned_cols=99 Identities=13% Similarity=0.136 Sum_probs=61.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhccc-CC-CCeee-eCCHHHHHhhcCCCcEEEEEc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE-GQ-LPLTG-HYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~-g~-~~i~~-~~s~~e~v~~l~~advIil~v 80 (505)
.+||+|||+|.+|..+|..|+..|. ++.++|++.++++.......+. .. .+... ..+.+++ ++ +|+||++.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~-~~---adivIita 81 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDC-KD---ADLVVITA 81 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHh-CC---CCEEEEec
Confidence 3589999999999999999999987 7999999988764443221110 00 02222 3444443 33 99999976
Q ss_pred CC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 81 KA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 81 p~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
-. +. .++++++.+..+- +..++|..||-
T Consensus 82 g~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP 124 (315)
T PRK00066 82 GAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNP 124 (315)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCc
Confidence 32 11 1333344454443 45667777753
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0018 Score=57.39 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=72.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee---eCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG---HYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~---~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++|.+||+| -|..+|..|++.|++|.+.|.++..++...+.+.. +.. ++..-++-++ +|+|...=|+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~-----~v~dDlf~p~~~~y~~---a~liysirpp~ 88 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLN-----AFVDDLFNPNLEIYKN---AKLIYSIRPPR 88 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCe-----EEECcCCCCCHHHHhc---CCEEEEeCCCH
Confidence 579999999 99999999999999999999999998887765421 222 2223345555 89999888885
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
.+..-+-+|...+...-+|...|+..|
T Consensus 89 -el~~~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 89 -DLQPFILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred -HHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 566666778777777777777777654
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.001 Score=63.35 Aligned_cols=190 Identities=12% Similarity=0.115 Sum_probs=109.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+.+|+||.|..|.....+-...++... +-.|++++.+.+.+.. ...+.++....+..+++|.-||+.
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~----------~a~p~d~~~~ael~~~vfv~vpd~- 78 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETY----------VAPPLDVAKSAELLLLVFVDVPDA- 78 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhcc----------CCCccchhhChhhhceEEecchHH-
Confidence 3579999999999996666555566555 4478888877765432 223334444322267788777774
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE---e-CCCCCCHHHhh--cCCc-cccCCCHHHHHH
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL---G-MGVSGGEEGAR--HGPS-LMPGGSFEAYNN 157 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i---~-~pvsGg~~~a~--~G~~-im~gg~~ea~~~ 157 (505)
.+-.+...- .-.+|+++++||...-. .+.+.+...|..-. . +-.+|.++... .++. .+..+|+--+..
T Consensus 79 ~~s~vaa~~--~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai 153 (289)
T COG5495 79 LYSGVAATS--LNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAI 153 (289)
T ss_pred HHHHHHHhc--ccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHH
Confidence 333333222 24589999999886533 34444444443211 1 23566666554 2332 233577777888
Q ss_pred HHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHH
Q 010637 158 IRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
++.+...||.+ .+-+-+.-...| -...|--..-...++.|+..+.+..| .|.-+
T Consensus 154 ~q~la~emgg~------~f~V~~~~r~lY-Haaa~~asnf~v~~l~~a~~i~~aag-~Dq~e 207 (289)
T COG5495 154 VQSLALEMGGE------PFCVREEARILY-HAAAVHASNFIVTVLADALEIYRAAG-DDQPE 207 (289)
T ss_pred HHHHHHHhCCC------ceeechhHHHHH-HHHHHHhhccHHHHHHHHHHHHHHhc-CCCcc
Confidence 99999999954 222222110000 01111111224667789999999888 87444
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0013 Score=60.74 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=53.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|||+|||+ |..|+.|+.-..++||+|+.+-||++++..+......+ .. .-+++.+.+.|..-|+||.+.-..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q----~D-ifd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQ----KD-IFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeec----cc-ccChhhhHhhhcCCceEEEeccCC
Confidence 68999997 99999999999999999999999999976642211100 01 225555556666689999998554
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0032 Score=64.15 Aligned_cols=100 Identities=15% Similarity=0.209 Sum_probs=64.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcc----cCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHR----EGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~----~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.+||+|||+|.+|..+|..|+..|. ++.++|+++++++.......+ ....++..+.+++++ .+ +|+||++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-~~---adivvit 78 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-AN---SKVVIVT 78 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-CC---CCEEEEC
Confidence 3589999999999999999998875 799999988765433221110 000034545677764 33 9999997
Q ss_pred cCC----Cch-----------HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 80 VKA----GSP-----------VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~----~~~-----------v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.-. +.. ++++.+.+..+ .+..++|..||-.
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~ 123 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPV 123 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChH
Confidence 632 211 33334555555 4667777777643
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0021 Score=66.33 Aligned_cols=131 Identities=13% Similarity=0.166 Sum_probs=74.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC----------CCcEE-EEeCC----------hHHHHHHHHhhcccCCC-CeeeeCCH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK----------GFPIS-VYNRT----------TSKVDETLDRAHREGQL-PLTGHYTP 63 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~----------G~~V~-v~dr~----------~~~~~~l~~~~~~~g~~-~i~~~~s~ 63 (505)
..+|+|+|+|.||+.++..|.++ +.+|. ++|++ .++...+.+.......+ ......++
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 45899999999999999999865 34544 66753 33333333321100000 01123478
Q ss_pred HHHHhhcCCCcEEEEEcCCCchH-HHHHHHHHhcCCCCcEEEecCCCCch-hHHHHHHHHHHCCCeEE-eCCCCCCH
Q 010637 64 RDFVLSIQRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYL-GMGVSGGE 137 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v-~~vl~~l~~~l~~g~iIId~st~~~~-~t~~~~~~l~~~gi~~i-~~pvsGg~ 137 (505)
+++++. ..+|+|+.++|+.... +...+-+...+..|.-||-.+..... ...++.+..++.|..|. .+.+.+|-
T Consensus 82 ~ell~~-~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~gl 157 (341)
T PRK06270 82 LEVIRS-VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGAM 157 (341)
T ss_pred HHHhhc-cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeech
Confidence 888754 2389999999974331 11223334456678877754432211 23345555566677664 45555544
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0032 Score=63.79 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=62.3
Q ss_pred EEEEcccHHHHHHHHHHHhCC--CcEEEEeCChHHHHHHHHhhccc----CCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 9 IGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHRE----GQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 9 IgIIGlG~MG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~~~~----g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|||+|.+|..+|..|+..| .++.++|+++++++......... ...++....+.+++ + .+|+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l-~---~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADA-A---DADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHh-C---CCCEEEEcCCC
Confidence 689999999999999999998 68999999998766554321110 00023333444433 3 39999999854
Q ss_pred Cc---------------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 83 GS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.. .++++.+.+..+- ++.+||..||-
T Consensus 77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP 117 (300)
T cd00300 77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNP 117 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCh
Confidence 21 1334445555554 66677777764
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0018 Score=67.68 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=69.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--C-CcEEEEeCChHHHHHHHHhhccc-CCC-CeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--G-FPISVYNRTTSKVDETLDRAHRE-GQL-PLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G-~~V~v~dr~~~~~~~l~~~~~~~-g~~-~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+++|||+|.++......++.- . -+|.+|+|++++.++|.++.... ++. .+.++++++++++. +|+|+.+++
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~---ADIVvtaT~ 232 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG---SDIVTYCNS 232 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC---CCEEEEccC
Confidence 4799999999999999988762 2 37999999999999887654321 001 27778999999988 999999997
Q ss_pred CCch---HHHHHHHHHhcCCCCcEEEecCC
Q 010637 82 AGSP---VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~~---v~~vl~~l~~~l~~g~iIId~st 108 (505)
.... ...+++ ...+++|..|+-.+.
T Consensus 233 s~~~~~s~~Pv~~--~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 233 GETGDPSTYPYVK--REWVKPGAFLLMPAA 260 (379)
T ss_pred CCCCCCCcCcEec--HHHcCCCcEEecCCc
Confidence 6431 112332 124678887764433
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0026 Score=64.72 Aligned_cols=103 Identities=20% Similarity=0.208 Sum_probs=61.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCc--EEEEeCCh--HHHHHHH----HhhcccC-CCCeeeeCCHHHHHhhcCCCcEE
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFP--ISVYNRTT--SKVDETL----DRAHREG-QLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~--V~v~dr~~--~~~~~l~----~~~~~~g-~~~i~~~~s~~e~v~~l~~advI 76 (505)
|||+|||+ |.+|..++..|+..|+. |.++||++ ++++... +.....+ ..++....+.++ +.. +|+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~---aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAG---SDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH-hCC---CCEE
Confidence 58999997 99999999999999874 99999965 4332211 1100000 002334445544 333 9999
Q ss_pred EEEcCC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCCCCchhH
Q 010637 77 IILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 77 il~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (505)
|+++.. +. .++++...+.+..+ +.+||-.+|..+..+
T Consensus 77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t 128 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMT 128 (309)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHH
Confidence 999852 11 13344455666554 455665666544444
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0036 Score=60.85 Aligned_cols=115 Identities=12% Similarity=0.091 Sum_probs=77.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChHHHHHHHHhhcccCCC-CeeeeCCHHHHHhhcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPIS-VYNR----------TTSKVDETLDRAHREGQL-PLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~-v~dr----------~~~~~~~l~~~~~~~g~~-~i~~~~s~~e~v~~l~~a 73 (505)
.++|+|.|+|.+|+.+|+.|.+.|.+|+ +.|. +.+.+.+..+....-..+ .... -+.+++... ++
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~-~~~~~i~~~--~~ 107 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAER-ITNEELLEL--DC 107 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCcee-cCCccceee--cc
Confidence 4689999999999999999999999988 6677 666665554432110000 0111 133344332 48
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
|+++-|.+.+....+.+..+ +=++|+...|... +.+..+.|.++|+.|+.
T Consensus 108 Dvlip~a~~~~i~~~~~~~l-----~a~~I~egAN~~~--t~~a~~~L~~rGi~~~P 157 (227)
T cd01076 108 DILIPAALENQITADNADRI-----KAKIIVEAANGPT--TPEADEILHERGVLVVP 157 (227)
T ss_pred cEEEecCccCccCHHHHhhc-----eeeEEEeCCCCCC--CHHHHHHHHHCCCEEEC
Confidence 99999988765444444444 2468888888765 36777889999998875
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00087 Score=61.97 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=64.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee--------------------eCCHHHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--------------------HYTPRDF 66 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--------------------~~s~~e~ 66 (505)
.+|.|+|.|+.|.+-+..+...|++|.++|.++++.+++...... .+.. ......+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAY----FIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTE----ESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCc----eEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 579999999999999999999999999999999988776654432 1222 1111123
Q ss_pred HhhcCCCcEEEEEcC-CCchHHHHH-HHHHhcCCCCcEEEecCC
Q 010637 67 VLSIQRPRSVIILVK-AGSPVDQTI-AALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 67 v~~l~~advIil~vp-~~~~v~~vl-~~l~~~l~~g~iIId~st 108 (505)
.+.++.+|+||.++- .+.....++ ++.+..++++.+|+|.|-
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence 333334899997442 222333334 666677889999999865
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.002 Score=64.18 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=74.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEEc--CCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILV--KAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~v--p~~ 83 (505)
.+|.|||-|.+|.+-|+-..--|-+|++.|+|.+++..+-..... ++ ...+++..+.+.++++|+||-+| |..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----RVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----eeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 479999999999999999999999999999999998887665322 33 34566666666677799999876 333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~s 107 (505)
++=+-+.+++...++||.+|||..
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEE
Confidence 332334477788899999998853
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0023 Score=68.05 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=51.2
Q ss_pred CcEEEEcccHHHHHHHH--HHH----hCCCcEEEEeCChHHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCcE
Q 010637 7 SRIGLAGLAVMGQNLAL--NVA----EKGFPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~--~La----~~G~~V~v~dr~~~~~~~l~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~adv 75 (505)
+||+|||.|.||...+. .++ -.|.+|.++|+++++++.... .... .+ ..+++.+++..+.++. +|+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~d---ADf 78 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQG---ADY 78 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCC---CCE
Confidence 68999999999976665 554 235789999999988663221 1100 00 0146777887777776 999
Q ss_pred EEEEcCCC
Q 010637 76 VIILVKAG 83 (505)
Q Consensus 76 Iil~vp~~ 83 (505)
||+++-.+
T Consensus 79 Vv~ti~vg 86 (431)
T PRK15076 79 VINAIQVG 86 (431)
T ss_pred EeEeeeeC
Confidence 99998665
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0026 Score=63.82 Aligned_cols=105 Identities=12% Similarity=0.176 Sum_probs=83.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++||+|+|.+|+.+|.++..-|..|..||.-... ++..+. +++ ..+++|+... +|+|=+-+|-....
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~-~~~~a~-------gvq-~vsl~Eil~~---ADFitlH~PLtP~T 214 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPM-ALAEAF-------GVQ-LVSLEEILPK---ADFITLHVPLTPST 214 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCch-HHHHhc-------cce-eeeHHHHHhh---cCEEEEccCCCcch
Confidence 46999999999999999999999999998754321 122222 244 3578888876 99999999988888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ 123 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~ 123 (505)
+.++ ++....+++|.-||+++.+-.-++..+.+.+..
T Consensus 215 ~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 215 EKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred hhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 8888 566677899999999999998899888887764
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0047 Score=62.26 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=65.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChHHHH-HHHHhhcccCCCCeee-eCCHHHHHhh--cCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVD-ETLDRAHREGQLPLTG-HYTPRDFVLS--IQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~~~~~-~l~~~~~~~g~~~i~~-~~s~~e~v~~--l~~advIil~ 79 (505)
+.||||||+|.+|..+...+.+. +.++. ++|+++++.. ...++. ++.. +++.+++++. ++..|+|+.+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~------Gi~~~~~~ie~LL~~~~~~dIDiVf~A 77 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRL------GVATSAEGIDGLLAMPEFDDIDIVFDA 77 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHc------CCCcccCCHHHHHhCcCCCCCCEEEEC
Confidence 46899999999999988888764 55655 7799886432 222221 2333 4688888863 3458999999
Q ss_pred cCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+|... ..+....+ +..|..+||.+...
T Consensus 78 T~a~~-H~e~a~~a---~eaGk~VID~sPA~ 104 (302)
T PRK08300 78 TSAGA-HVRHAAKL---REAGIRAIDLTPAA 104 (302)
T ss_pred CCHHH-HHHHHHHH---HHcCCeEEECCccc
Confidence 98853 33333333 45789999987764
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.004 Score=59.34 Aligned_cols=33 Identities=24% Similarity=0.507 Sum_probs=30.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT 38 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~ 38 (505)
..+|+|+|+|.||..+|.+|++.|+ +|+++|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3579999999999999999999999 69999999
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.002 Score=66.62 Aligned_cols=98 Identities=13% Similarity=0.173 Sum_probs=61.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcc-cCCCCeee-eCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHR-EGQLPLTG-HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~-~g~~~i~~-~~s~~e~v~~l~~advIil~vp 81 (505)
+||+|||+ |.+|..+++.|.++ ++++. +++++...-+.+.+.... .+...... ..+.+++.+. +|++|+|+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAED---ADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcC---CCEEEECCC
Confidence 48999998 99999999999987 66777 556554322222221110 00000111 1245555544 999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
++ ...+++..+. ..|..|||.|+.+-
T Consensus 78 ~~-~s~~~~~~~~---~~G~~VIDlS~~fR 103 (346)
T TIGR01850 78 HG-VSAELAPELL---AAGVKVIDLSADFR 103 (346)
T ss_pred ch-HHHHHHHHHH---hCCCEEEeCChhhh
Confidence 97 4455555543 46899999998753
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0048 Score=63.72 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=60.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhccc------------CCCCeeeeCCHHHHHhhcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHRE------------GQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~------------g~~~i~~~~s~~e~v~~l~ 71 (505)
|+||||+|+|.||+.++..+.++ +++|. ++|++++....+.+..... ++.++.+..+++++...
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~-- 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEK-- 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhcc--
Confidence 36899999999999999998864 56766 5577765555444421000 00024555667766654
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 72 RPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 72 ~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+|+||.|+|... ..+... .++..|..+|+.+..
T Consensus 79 -vDVVIdaT~~~~-~~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 -ADIVVDATPGGV-GAKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred -CCEEEECCCchh-hHHHHH---HHHHCCCEEEEcCCC
Confidence 888888887753 333333 234456777776664
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.015 Score=50.59 Aligned_cols=101 Identities=17% Similarity=0.229 Sum_probs=73.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHH--HHhcCCCCCCCcccH
Q 010637 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKK--AYQRNPNLASLVVDP 404 (505)
Q Consensus 327 ~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~--~~~~~~~~~~ll~~~ 404 (505)
.++-.|.++|-+.++.+..++|++.+-++. ++|.+++.++-+.| --.|+.++.... ++..+.+ +
T Consensus 2 ~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~------Gld~~~~~~vl~~~-~~~s~~~~~~~~~~~~~~~~~-------~ 67 (122)
T PF14833_consen 2 AGQAMKLANNLLIAANMAALAEALALAEKA------GLDPEQLLDVLSAG-SGGSWMLKNRAPRMILNGDFD-------P 67 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TS-HHHHHHHHHTS-TTHBHHHHHHHHHHHHTTTTC-------S
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHccC-CcCchHHHhhhhhhhhcccCC-------c
Confidence 356789999999999999999999998854 39999999999877 457888776543 3333221 1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010637 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~ 443 (505)
.| .++-...+++-++..|-+.|+|+|..+.+..+|..
T Consensus 68 ~f--~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~ 104 (122)
T PF14833_consen 68 GF--SLDLARKDLRLALDLAKEAGVPLPLGSAARQLYQA 104 (122)
T ss_dssp SS--BHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred cc--hhHhhccHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 22 12344567788999999999999999999987763
|
... |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0086 Score=64.03 Aligned_cols=115 Identities=13% Similarity=0.169 Sum_probs=74.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCe-eee-CCHHHHH-hhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGH-YTPRDFV-LSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~-~s~~e~v-~~l~~advIil~vp~ 82 (505)
+++|-|+|+|.+|..++..|.+.|++|.++|+++++.+.+.+.+... .+ ... .+.+.+. ..++++|.|+++.++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~---~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNT---LVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCC---eEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 46799999999999999999999999999999999988887653210 11 111 2333332 235569999988887
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+ ...-.+..+...+....+|+-+.+.. ....+...|+.++-
T Consensus 308 ~-~~n~~~~~~~~~~~~~~ii~~~~~~~------~~~~~~~~g~~~vi 348 (453)
T PRK09496 308 D-EANILSSLLAKRLGAKKVIALVNRPA------YVDLVEGLGIDIAI 348 (453)
T ss_pred c-HHHHHHHHHHHHhCCCeEEEEECCcc------hHHHHHhcCCCEEE
Confidence 5 33333333444455556666554432 12334556776553
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0034 Score=65.86 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=71.3
Q ss_pred CcEEEEcccHHHHHH-HHHHHhCCCcEEEEeCChHHHHHHHHhhcc----cC-C-C-----Ceeee--CCHHHHHhhcCC
Q 010637 7 SRIGLAGLAVMGQNL-ALNVAEKGFPISVYNRTTSKVDETLDRAHR----EG-Q-L-----PLTGH--YTPRDFVLSIQR 72 (505)
Q Consensus 7 ~~IgIIGlG~MG~~l-A~~La~~G~~V~v~dr~~~~~~~l~~~~~~----~g-~-~-----~i~~~--~s~~e~v~~l~~ 72 (505)
|||.++|+|.||++. +..|.+.|++|++.|++++.++.+.+++.- .+ . . ++... .+.+++.+.+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 589999999999855 888899999999999999999998877531 01 0 0 11112 133555555556
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcC--------CCCcEEEecCCCCc
Q 010637 73 PRSVIILVKAGSPVDQTIAALSEHM--------SPGDCIIDGGNEWY 111 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l--------~~g~iIId~st~~~ 111 (505)
+|+|.++|... ..+.+...|.+.| .++-.|+.|-|...
T Consensus 81 ~dlvt~~v~~~-~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ 126 (381)
T PRK02318 81 ADLVTTAVGPN-ILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIR 126 (381)
T ss_pred CCEEEeCCCcc-cchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhh
Confidence 89999999765 4556665555544 23337888888754
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0048 Score=57.09 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=52.9
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 9 IGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 9 IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|.|+|. |.+|..++..|.+.|++|++..|++++.+. ..+. .+.. ..+++.+.+.++.+|.||.+++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~-----~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGV-----EIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTE-----EEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--cccc-----ccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 679995 999999999999999999999999998776 2211 1111 245666667777799999999754
|
... |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0041 Score=50.72 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=47.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+++|+|.|.+|..++..|.+. +.+|.+||| |++|.+++.+.
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------di~i~~~~~~~ 66 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------------------DILVTATPAGV 66 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------------------CEEEEcCCCCC
Confidence 35799999999999999999998 567888876 57777776654
Q ss_pred hHHHHHHHHHhcCCCCcEEEecC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~s 107 (505)
.+.+ +....+.++.+|+|++
T Consensus 67 ~~~~---~~~~~~~~~~~v~~~a 86 (86)
T cd05191 67 PVLE---EATAKINEGAVVIDLA 86 (86)
T ss_pred CchH---HHHHhcCCCCEEEecC
Confidence 4332 2334456788888863
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0056 Score=59.47 Aligned_cols=107 Identities=18% Similarity=0.151 Sum_probs=69.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc---EEEEeCC----hHHH-------HHHHHhhcccCCCCeeeeCCHHHHHhhcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFP---ISVYNRT----TSKV-------DETLDRAHREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~---V~v~dr~----~~~~-------~~l~~~~~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
.++|-|+|+|.+|..+|..|.+.|.. |+++||+ .++. ..+.+..... ....++.+.+..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~-----~~~~~l~~~l~~-- 97 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPE-----KTGGTLKEALKG-- 97 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccC-----cccCCHHHHHhc--
Confidence 35899999999999999999999974 9999999 4443 2233221100 111256566655
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCe
Q 010637 72 RPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 72 ~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+|+||-++|.+.....+++ .+.++.+|++.+|-.+ +...+...+.|..
T Consensus 98 -~dvlIgaT~~G~~~~~~l~----~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~ 145 (226)
T cd05311 98 -ADVFIGVSRPGVVKKEMIK----KMAKDPIVFALANPVP---EIWPEEAKEAGAD 145 (226)
T ss_pred -CCEEEeCCCCCCCCHHHHH----hhCCCCEEEEeCCCCC---cCCHHHHHHcCCc
Confidence 9999999986643333333 3446788889885443 2344444455554
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0056 Score=61.39 Aligned_cols=93 Identities=10% Similarity=0.063 Sum_probs=63.7
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEE-EEeCChHHHH-HHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAE-KGFPIS-VYNRTTSKVD-ETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~-~G~~V~-v~dr~~~~~~-~l~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++|||||+|.||..++..+.+ .+.++. ++|+++++.. .+.+.. ++ ..+.+.+++++. ...|+|++++|+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~------Gi~~~~~~~e~ll~~-~dIDaV~iaTp~ 74 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARAREL------GVKTSAEGVDGLLAN-PDIDIVFDATSA 74 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHC------CCCEEECCHHHHhcC-CCCCEEEECCCc
Confidence 589999999999999888875 356665 6799887533 233221 23 345678888864 347899999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
....+ ... ..+..|..|+|.+...
T Consensus 75 ~~H~e-~a~---~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 75 KAHAR-HAR---LLAELGKIVIDLTPAA 98 (285)
T ss_pred HHHHH-HHH---HHHHcCCEEEECCccc
Confidence 74433 222 2355789999877654
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.045 Score=53.65 Aligned_cols=148 Identities=14% Similarity=0.082 Sum_probs=97.3
Q ss_pred CeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE---eCC
Q 010637 56 PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL---GMG 132 (505)
Q Consensus 56 ~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i---~~p 132 (505)
++.++++..|+++. +|++|+-+|-|...-.+++.+.+++++|.||.++.|.++.......+.+..+.+... .+.
T Consensus 128 GvkVtsDD~EAvk~---aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVAD---ADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcC---CCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 56777777788877 999999999998777889999999999999999999987776666665554433332 233
Q ss_pred CCCCHHHhhcCCccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHH
Q 010637 133 VSGGEEGARHGPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (505)
Q Consensus 133 vsGg~~~a~~G~~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~ 210 (505)
|-|.+ |.++..- .++|..+++-++.+..+ +..+.+-..-.+...-|. ..+.+...+.+.+-+....
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~------k~ay~~PA~lvspV~DMg-S~VTAv~~aGiL~Y~~~~t 272 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKAR------GNAFKMPANLIGPVCDMC-SAVTAIVYAGILAYRDAVT 272 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhC------CCeeecchhhcchhhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 44433 4433333 37888999999999988 556655333233333333 2233334455555555566
Q ss_pred HhCCCCHH
Q 010637 211 HVGGLSNA 218 (505)
Q Consensus 211 ~~g~l~~~ 218 (505)
+..|.+.+
T Consensus 273 qIlgAP~~ 280 (342)
T PRK00961 273 QILGAPAD 280 (342)
T ss_pred HHhcCcHH
Confidence 65534433
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0051 Score=66.37 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=65.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhccc--------C--CCC-eeeeCCH-H-----HHHhh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE--------G--QLP-LTGHYTP-R-----DFVLS 69 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~--------g--~~~-i~~~~s~-~-----e~v~~ 69 (505)
.++.|+|+|.+|...+..+...|..|.++|+++++.+.+...+... | .-+ .+..++. . .+.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~ 244 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ 244 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999877766543210 0 000 0000000 0 03333
Q ss_pred cCCCcEEEEEc-----CCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 70 IQRPRSVIILV-----KAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 70 l~~advIil~v-----p~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+|+||.++ |.+ .-+.++....+++|.+|||.+..
T Consensus 245 ~~~~DIVI~TalipG~~aP---~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 245 AKEVDIIITTALIPGKPAP---KLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred hCCCCEEEECcccCCCCCC---eeehHHHHhhCCCCCEEEEeeeC
Confidence 55689998887 332 11225556778888899888763
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0038 Score=63.36 Aligned_cols=102 Identities=17% Similarity=0.288 Sum_probs=62.5
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhccc-CC--CCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHRE-GQ--LPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~-g~--~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
+|+||+|||. |.-|..|.+.|+.+. .+|..+..+..+=+.+.+...+. |. ++++ .-+++++ ....+|+||+|
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~-~~~~~~~--~~~~~DvvFla 77 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQ-TIDPEKI--ELDECDVVFLA 77 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccc-cCChhhh--hcccCCEEEEe
Confidence 3679999996 999999999999885 47666655443323333333221 00 0111 1123333 22348999999
Q ss_pred cCCCchHHHHHHHHHhcCCCCcEEEecCCCCchh
Q 010637 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN 113 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~ 113 (505)
+|++.. .+.+..+ +.+|..|||+|+-+--.
T Consensus 78 lPhg~s-~~~v~~l---~~~g~~VIDLSadfR~~ 107 (349)
T COG0002 78 LPHGVS-AELVPEL---LEAGCKVIDLSADFRLK 107 (349)
T ss_pred cCchhH-HHHHHHH---HhCCCeEEECCcccccC
Confidence 999843 4444444 34677799999976443
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0047 Score=61.81 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=79.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|+|+|-++++++..|++.|. +|+|+||+.++.+++.+.....+ .........++.. +..+|+||-++|.+..
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~--~~~~~~~~~~~~~-~~~~dliINaTp~Gm~ 203 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELG--AAVEAAALADLEG-LEEADLLINATPVGMA 203 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ccccccccccccc-ccccCEEEECCCCCCC
Confidence 469999999999999999999995 79999999999999987654321 0001112221111 1138999999998855
Q ss_pred HHH---HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 86 VDQ---TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 v~~---vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
-.. .+. ...+.++.++.|.--... .| .+.+..+++|...++
T Consensus 204 ~~~~~~~~~--~~~l~~~~~v~D~vY~P~-~T-plL~~A~~~G~~~id 247 (283)
T COG0169 204 GPEGDSPVP--AELLPKGAIVYDVVYNPL-ET-PLLREARAQGAKTID 247 (283)
T ss_pred CCCCCCCCc--HHhcCcCCEEEEeccCCC-CC-HHHHHHHHcCCeEEC
Confidence 431 222 345788999999855433 33 455666777776544
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.044 Score=53.81 Aligned_cols=151 Identities=13% Similarity=0.103 Sum_probs=96.4
Q ss_pred CeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 56 PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 56 ~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
++.++++..|+++. +|++|+-+|-|...-.+++++.+.+++|.||.++.|.++....+..+.+..+.+...... -+
T Consensus 126 GvkVtsDD~EAv~~---aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~H-Pa 201 (340)
T TIGR01723 126 GLKVTTDDREAVED---ADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYH-PG 201 (340)
T ss_pred CceEecCcHHHhcC---CCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccC-CC
Confidence 56777788888887 999999999998677888999999999999999999987766666555554444333221 12
Q ss_pred CHHHhhcCC-ccccC-CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhC
Q 010637 136 GEEGARHGP-SLMPG-GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG 213 (505)
Q Consensus 136 g~~~a~~G~-~im~g-g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g 213 (505)
+.++.. |. .+.-| .++|..+++-++.+.++ +..+.+-..-.+...-|. ..+.+...+.+.+-+....+..
T Consensus 202 aVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~------k~ay~~PA~LvspV~DMg-S~VTAv~~aGiL~Y~~~~t~Il 273 (340)
T TIGR01723 202 CVPEMK-GQVYIAEGYASEEAVNKLYELGKKAR------GKAFKMPANLLGPVCDMC-SAVTAIVYAGLLAYRDAVTKIL 273 (340)
T ss_pred CCCCCC-CceEeecccCCHHHHHHHHHHHHHhC------CCeeecchhhccchhhHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 233333 34 33222 38888999999999988 555555332222232332 2223334455555555555555
Q ss_pred CCCHH
Q 010637 214 GLSNA 218 (505)
Q Consensus 214 ~l~~~ 218 (505)
|.+.+
T Consensus 274 gAP~~ 278 (340)
T TIGR01723 274 GAPAD 278 (340)
T ss_pred cCcHH
Confidence 34433
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.013 Score=62.93 Aligned_cols=114 Identities=9% Similarity=0.029 Sum_probs=67.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH-----HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc-
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-----KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~-----~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v- 80 (505)
++|+|+|+|.-|.++|+.|.+.|++|+++|+++. ..+++.+.+. .+.......+.+.. +|+||.+-
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi-----~~~~~~~~~~~~~~---~dlVV~Spg 86 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGV-----KLVLGENYLDKLDG---FDVIFKTPS 86 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCC-----EEEeCCCChHHhcc---CCEEEECCC
Confidence 5799999999999999999999999999998753 1233443321 12222222333343 89888863
Q ss_pred -CCC-chHHHHHH---------HHH-hcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 81 -KAG-SPVDQTIA---------ALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 81 -p~~-~~v~~vl~---------~l~-~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
|.. ..+....+ ++. .......|-|.+|++...++.-+...+...|...
T Consensus 87 i~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~ 146 (458)
T PRK01710 87 MRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKT 146 (458)
T ss_pred CCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCE
Confidence 111 11222111 111 2222234566677777666666667777766543
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.013 Score=60.51 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=71.1
Q ss_pred CcEEEEcccHHHH-HHHHHHHh--CCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQ-NLALNVAE--KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~-~lA~~La~--~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.||||||+|.++. ..+..+.. .+++|. ++|+++++. ++.+... .+..+++.+++++. ...|+|++++|+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~-----~~~~~~~~~ell~~-~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYS-----HIHFTSDLDEVLND-PDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcC-----CCcccCCHHHHhcC-CCCCEEEEeCCc
Confidence 5899999999775 34454533 356765 789997654 4443321 24567899999874 347999999999
Q ss_pred CchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEE
Q 010637 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (505)
....+-+...+ ..|+ ++++- =.....+.+++.+..+++|+.+.
T Consensus 75 ~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 75 DSHFEYAKRAL----EAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVT 119 (344)
T ss_pred hHHHHHHHHHH----HcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 86655544433 3343 55552 11233566677777777776543
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0059 Score=64.99 Aligned_cols=120 Identities=18% Similarity=0.263 Sum_probs=72.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--------C--Cc-EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK--------G--FP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~--------G--~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~ad 74 (505)
+.+|||+|+|.||..++..|.++ | .+ +.+++|++++.+.+. . . ....+++++++++. ...|
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-~---~---~~~~~~d~~~ll~d-~~iD 74 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-L---P---GILLTTDPEELVND-PDID 74 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-C---c---ccceeCCHHHHhhC-CCCC
Confidence 36899999999999999888654 3 34 447799977643211 0 0 24567889998864 2369
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCC-CchhHHHHHHHHHHCCCeE-EeCCCCCC
Q 010637 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLNTERRIHEASQKGLLY-LGMGVSGG 136 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~-~~~~t~~~~~~l~~~gi~~-i~~pvsGg 136 (505)
+|+.+++......+. +...|..|.-|+..... ......++.+..+++|+.| +++.|.||
T Consensus 75 vVve~tg~~~~~~~~---~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~gg 135 (426)
T PRK06349 75 IVVELMGGIEPAREL---ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGG 135 (426)
T ss_pred EEEECCCCchHHHHH---HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeecc
Confidence 999998764333333 33456678777743221 1112334445555667754 34545444
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0054 Score=61.38 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=57.5
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~-MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||.|. +|.++|..|...|.+|+++++... ++.+.+.. +|+||.+++....
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~---------------------~l~~~~~~---ADIVIsAvg~p~~ 214 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK---------------------DMASYLKD---ADVIVSAVGKPGL 214 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------hHHHHHhh---CCEEEECCCCCcc
Confidence 5799999987 999999999999999999986431 34444555 9999999987643
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 215 VTK------DVVKEGAVIIDVGNTP 233 (286)
T ss_pred cCH------HHcCCCcEEEEcCCCc
Confidence 222 2467899999998753
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.019 Score=59.40 Aligned_cols=99 Identities=13% Similarity=0.184 Sum_probs=61.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHh----hcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR----AHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~----~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
+||+|||+|.+|..+|..|+..|. ++.++|+++++++..... ....+..++....+.+++ ++ ||+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~~-~d---aDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVT-AG---SDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHHh-CC---CCEEEECC
Confidence 589999999999999999998875 799999998765433221 100000023333466653 33 99999985
Q ss_pred CC----Cch-----------HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KA----GSP-----------VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~----~~~-----------v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
-. +.. ++++...+..+ .+..++|..||-.
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPv 157 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPV 157 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCch
Confidence 32 211 22333455554 4566777777643
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0087 Score=64.12 Aligned_cols=107 Identities=16% Similarity=0.172 Sum_probs=73.6
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGL----AVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGl----G~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.+|+|||. |.+|..+.++|.+.|| +|+..|...+. + . ++..+.+++|+-+. +|++++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~---i------~---G~~~~~sl~~lp~~---~Dlavi~v 72 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE---I------L---GVKAYPSVLEIPDP---VDLAVIVV 72 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc---c------C---CccccCCHHHCCCC---CCEEEEec
Confidence 46999999 8899999999999999 46555544321 1 1 35677889888665 89999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCch-------hHHHHHHHHHHCCCeEEeC
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL-------NTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~-------~t~~~~~~l~~~gi~~i~~ 131 (505)
|.. .+.++++++... .-..+||- +.++.+ ..+++.+..++.|+++++.
T Consensus 73 p~~-~~~~~l~e~~~~-gv~~~vi~-s~gf~e~g~~g~~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 73 PAK-YVPQVVEECGEK-GVKGAVVI-TAGFKEVGEEGAELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred CHH-HHHHHHHHHHhc-CCCEEEEE-CCCccccCcchHHHHHHHHHHHHHcCCEEEec
Confidence 985 678888877663 23344442 333322 2245556666778888764
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0024 Score=53.29 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=59.2
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCc-EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVA-EKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La-~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|.|+|+|.+|..++.++. ..|+. +.++|.++.+..+-. . ++.+..+.+++.+.+ .+|+.+++||+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-----~---gipV~~~~~~l~~~~-~i~iaii~VP~~- 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-----G---GIPVYGSMDELEEFI-EIDIAIITVPAE- 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-----T---TEEEESSHHHHHHHC-TTSEEEEES-HH-
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-----C---CEEeeccHHHhhhhh-CCCEEEEEcCHH-
Confidence 47999999999999986544 55776 457899998643211 1 477778999998877 599999999985
Q ss_pred hHHHHHHHHHh
Q 010637 85 PVDQTIAALSE 95 (505)
Q Consensus 85 ~v~~vl~~l~~ 95 (505)
.+.++++++..
T Consensus 74 ~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 AAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67777777665
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.021 Score=54.39 Aligned_cols=124 Identities=13% Similarity=0.131 Sum_probs=70.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|.+|..+|.+|+..|. +++++|.+.=....+..+.. .....+-.-+....+.+..+ .+++-+...+..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~ 99 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLREL-NSDIQVTALKER 99 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHh-CCCCEEEEehhc
Confidence 3579999999999999999999997 89999988533222222110 00000000011112222221 155656555443
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-. .+ .+...+..-|+||+++.. +..-..+.+.+.+.++.|+.+.+.|
T Consensus 100 i~-~~---~~~~~~~~~D~Vi~~~d~-~~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 100 VT-AE---NLELLINNVDLVLDCTDN-FATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred CC-HH---HHHHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 11 222334556899998755 3444445666777888888776543
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.015 Score=61.67 Aligned_cols=126 Identities=17% Similarity=0.092 Sum_probs=78.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh-cccCCCCeeee--CCHHHHHhhcCCCcEEEEE--
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-HREGQLPLTGH--YTPRDFVLSIQRPRSVIIL-- 79 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-~~~g~~~i~~~--~s~~e~v~~l~~advIil~-- 79 (505)
..+||.|+|+|.-|.+.|+.|.+.|++|+++|.++.. +...... ... ++... ....+... .+|+||..
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~~~~~~~~~~---~i~~~~g~~~~~~~~---~~d~vV~SPG 78 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EGLAAQPLLLE---GIEVELGSHDDEDLA---EFDLVVKSPG 78 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cchhhhhhhcc---CceeecCccchhccc---cCCEEEECCC
Confidence 3578999999999999999999999999999977655 1111110 000 12221 11112223 38888875
Q ss_pred cCCCch-HHHHHH---------HHHhcC--CCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 80 VKAGSP-VDQTIA---------ALSEHM--SPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 80 vp~~~~-v~~vl~---------~l~~~l--~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
+|.... ++.... +|.... ...-+-|.+||+...+|.-+...++..|....-++-.|.+
T Consensus 79 i~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 79 IPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred CCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCcc
Confidence 233222 332221 222222 2336778888998888888888899888866656655554
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.01 Score=60.84 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=71.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--------CCcE-EEEeCChHHH-------HHHHHhhcccCCCCeeeeC--CHHHHHh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--------GFPI-SVYNRTTSKV-------DETLDRAHREGQLPLTGHY--TPRDFVL 68 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--------G~~V-~v~dr~~~~~-------~~l~~~~~~~g~~~i~~~~--s~~e~v~ 68 (505)
|+|+|||+|.+|+.++..|.++ +.+| .+.|++.... +++.+.... |.+...... +++++.+
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCCCcCCHHHHhc
Confidence 4899999999999999999873 3443 4567664321 222211110 000001112 5666654
Q ss_pred hcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchh-HHHHHHHHHHCCCeE-EeCCCCCCHH
Q 010637 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN-TERRIHEASQKGLLY-LGMGVSGGEE 138 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~-t~~~~~~l~~~gi~~-i~~pvsGg~~ 138 (505)
..+|++|.|.|....-......+.+.|..|.-||..+...... -.++.+..+++|.+| +++.|.||.+
T Consensus 80 --~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~P 149 (326)
T PRK06392 80 --IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVP 149 (326)
T ss_pred --CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccc
Confidence 2489999999753221223444556677888888766543221 223334444556655 4566665543
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.021 Score=58.12 Aligned_cols=98 Identities=10% Similarity=0.058 Sum_probs=60.0
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHh----hcccCCCCeee-eCCHHHHHhhcCCCcEEEEEc
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR----AHREGQLPLTG-HYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~----~~~~g~~~i~~-~~s~~e~v~~l~~advIil~v 80 (505)
||+|||+|.+|..+|..|+..|. ++.++|+++++++..... ....+..+++. ..+.+++.+ +|+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~----aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCAD----ADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCC----CCEEEECC
Confidence 69999999999999999998886 799999988765432221 11000001222 345554433 99999987
Q ss_pred CC----Cch-------------HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KA----GSP-------------VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~----~~~-------------v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
-. +.. ++++...+..+- ++.++|..||-.
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPv 122 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPL 122 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcH
Confidence 32 221 122223444443 567788787754
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.014 Score=58.89 Aligned_cols=120 Identities=12% Similarity=0.158 Sum_probs=72.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCCh---HHHHHHHHhhcccC-CCCeeee--CCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTT---SKVDETLDRAHREG-QLPLTGH--YTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~-V~v~dr~~---~~~~~l~~~~~~~g-~~~i~~~--~s~~e~v~~l~~advIil~ 79 (505)
+++-|+|+|-.|++++..|++.|.+ |+++||++ ++.+++.++....+ ...+..+ .+.+++.+.++.+|+||-+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINa 206 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNA 206 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEe
Confidence 4688999999999999999999996 99999997 66666554321110 0011111 2222333333448999999
Q ss_pred cCCCchH--HH-HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 80 VKAGSPV--DQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 80 vp~~~~v--~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
+|.+..- +. .+.. ...+.++.+++|.--... .| .+.+..+++|...+
T Consensus 207 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~ 256 (289)
T PRK12548 207 TLVGMKPNDGETNIKD-TSVFRKDLVVADTVYNPK-KT-KLLEDAEAAGCKTV 256 (289)
T ss_pred CCCCCCCCCCCCCCCc-HHhcCCCCEEEEecCCCC-CC-HHHHHHHHCCCeee
Confidence 9877421 10 0100 134677889999865443 33 44555566665543
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0043 Score=64.91 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=61.6
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+++||+|+|+ |..|..|.+.|.++ +++|..+.++...-+.+................+.+.. .++.+|+||+++|.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~--~~~~~DvVf~Alp~ 114 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDA--DFSDVDAVFCCLPH 114 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHH--HhcCCCEEEEcCCH
Confidence 3568999997 99999999999998 67998887765432222221110000001111112211 12349999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
+ ...+++.. +..|..|||.|+.+-
T Consensus 115 ~-~s~~i~~~----~~~g~~VIDlSs~fR 138 (381)
T PLN02968 115 G-TTQEIIKA----LPKDLKIVDLSADFR 138 (381)
T ss_pred H-HHHHHHHH----HhCCCEEEEcCchhc
Confidence 6 44445444 346889999998753
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.012 Score=59.19 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=74.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+++.|+|+|-.|++++..|++.|. +|+++||+.++.+++.+..... +...+.. .+..+..+.+..+|+||-++|.+.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~-~~~~~~~~~~~~~divINaTp~Gm 206 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVG-VDARGIEDVIAAADGVVNATPMGM 206 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEe-cCHhHHHHHHhhcCEEEEcCCCCC
Confidence 469999999999999999999996 7999999999998887653210 0000111 222211111223899999998764
Q ss_pred hHHH--HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 85 PVDQ--TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v~~--vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.-.. .++ ...+.++.+++|.--.. ..| .+.+..+++|...++
T Consensus 207 ~~~~~~~~~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~~ 250 (283)
T PRK14027 207 PAHPGTAFD--VSCLTKDHWVGDVVYMP-IET-ELLKAARALGCETLD 250 (283)
T ss_pred CCCCCCCCC--HHHcCCCcEEEEcccCC-CCC-HHHHHHHHCCCEEEc
Confidence 2110 011 12356778999986543 333 445555667765543
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.019 Score=59.23 Aligned_cols=124 Identities=13% Similarity=0.160 Sum_probs=69.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cC--CCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EG--QLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g--~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
..+|.|||+|.+|..+|.+|++.|+ +++++|++.=....+..+... .. +.+..-+....+-+..+ .+++-+..+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i-np~v~i~~~~ 102 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI-NSEVEIVPVV 102 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH-CCCcEEEEEe
Confidence 3579999999999999999999998 899999886322222111000 00 00000011111222221 1566666665
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
.... ...++++ +..-|+|||++.. +.....+...+.+.++-++.+.+.|
T Consensus 103 ~~~~-~~~~~~~---~~~~DlVid~~D~-~~~r~~in~~~~~~~ip~i~~~~~g 151 (338)
T PRK12475 103 TDVT-VEELEEL---VKEVDLIIDATDN-FDTRLLINDLSQKYNIPWIYGGCVG 151 (338)
T ss_pred ccCC-HHHHHHH---hcCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 4322 2233333 4556899999754 3333344556667788777665544
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0061 Score=60.92 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=58.1
Q ss_pred CcEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVM-GQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~M-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||.|.. |.++|..|.+.|..|++++.. +.++.+.+.. +|+||.+++....
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------------------t~~l~~~~~~---ADIVV~avG~~~~ 214 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------------------TRDLAAHTRQ---ADIVVAAVGKRNV 214 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------------------CCCHHHHhhh---CCEEEEcCCCcCc
Confidence 57999999877 999999999999999997532 1355566665 9999999987643
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~ik~gavVIDVGin~ 233 (285)
T PRK14189 215 LTA------DMVKPGATVIDVGMNR 233 (285)
T ss_pred cCH------HHcCCCCEEEEccccc
Confidence 322 4688999999998754
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.014 Score=63.22 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=39.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~ 50 (505)
.+|.|+|+|.+|...+..+...|.+|.++|+++++.+...+.+.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA 209 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA 209 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 47999999999999999999999999999999999887776553
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.04 Score=58.91 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=66.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh-HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|.|+|.|.+|..+|..|++.|++|+++|++. +.+++..++....| ..+.......+.... +|+||.+.-...
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~---~d~vv~~~g~~~ 80 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELG-IELVLGEYPEEFLEG---VDLVVVSPGVPL 80 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC-CEEEeCCcchhHhhc---CCEEEECCCCCC
Confidence 3579999999999999999999999999999985 33332222111110 122233333344444 899998763221
Q ss_pred hHHHHH--------------HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCC
Q 010637 85 PVDQTI--------------AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG 125 (505)
Q Consensus 85 ~v~~vl--------------~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~g 125 (505)
....+ +.+........|-|.+|++...++.-+...|...|
T Consensus 81 -~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g 134 (450)
T PRK14106 81 -DSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAG 134 (450)
T ss_pred -CCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 11111 11112223234555566666555555566776655
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.037 Score=59.80 Aligned_cols=113 Identities=18% Similarity=0.177 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeC--CHHHHHhhcCCCcEEEEE--cCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY--TPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~--s~~e~v~~l~~advIil~--vp~ 82 (505)
++|.|+|+|..|.++|..|.+.|++|+++|++.....++.+.. ++.... ...+.+.+ +|+||.+ +|.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~------gi~~~~~~~~~~~~~~---~d~vV~Spgi~~ 86 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVT------GVADISTAEASDQLDS---FSLVVTSPGWRP 86 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhc------CcEEEeCCCchhHhcC---CCEEEeCCCCCC
Confidence 5799999999999999999999999999998876554433321 233321 22333343 8888876 344
Q ss_pred Cch-HHHHHH---------HHHhc------C-CC-CcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 83 GSP-VDQTIA---------ALSEH------M-SP-GDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 83 ~~~-v~~vl~---------~l~~~------l-~~-g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+.+ +...-+ ++.-. + .+ ..|-|.+|++...++.-+...+...|...
T Consensus 87 ~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~ 150 (473)
T PRK00141 87 DSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAA 150 (473)
T ss_pred CCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcE
Confidence 322 221110 12111 1 12 24556677777666666677777766543
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.074 Score=54.81 Aligned_cols=128 Identities=16% Similarity=0.273 Sum_probs=69.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHh--------CCCc--EE-EEeCChHH-------HHHHHHhhcccCCC-Cee-----eeC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAE--------KGFP--IS-VYNRTTSK-------VDETLDRAHREGQL-PLT-----GHY 61 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~--------~G~~--V~-v~dr~~~~-------~~~l~~~~~~~g~~-~i~-----~~~ 61 (505)
.++|+|+|+|++|..+++.|.+ .|.+ |. +.|++... .+++.+.....+.. .+. ...
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 4689999999999999998877 4643 33 44654321 12222211110000 010 012
Q ss_pred CHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCch-hHHHHHHHHHHCCCeEE-eCCCCCCHH
Q 010637 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYL-GMGVSGGEE 138 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~-~t~~~~~~l~~~gi~~i-~~pvsGg~~ 138 (505)
+++++++.. .+|+||-+++. ....+.+. ..+..|.-||-.++.... .-.++.+..+++|..+. .+.+++|.+
T Consensus 82 ~~~ell~~~-~~DVvVd~t~~-~~a~~~~~---~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 82 SPEEIVEEI-DADIVVDVTND-KNAHEWHL---EALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred CHHHHHhcC-CCCEEEECCCc-HHHHHHHH---HHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence 667776432 38999988855 34444443 345577778876664211 22234444445676654 455776654
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.028 Score=56.48 Aligned_cols=116 Identities=14% Similarity=0.058 Sum_probs=80.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|.|. |.+|..+-.+|...|++ .++..+|.+ .+++ .++..+.+++|+.+.. .+|+.++++|..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v---------~G~~~y~sv~dlp~~~-~~Dlavi~vpa~ 74 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTV---------LGLPVFDSVKEAVEET-GANASVIFVPAP 74 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCccee---------cCeeccCCHHHHhhcc-CCCEEEEecCHH
Confidence 468999995 99999999999999999 777777762 1111 1467788999988742 269999999985
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchh-HHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLN-TERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~-t~~~~~~l~~~gi~~i~~pvsG 135 (505)
.+.++++++...--+ .+||- |....+. .+++.+..++.|+.++++-..|
T Consensus 75 -~v~~~l~e~~~~Gvk-~avIi-s~Gf~e~~~~~l~~~a~~~girilGPNc~G 124 (286)
T TIGR01019 75 -FAADAIFEAIDAGIE-LIVCI-TEGIPVHDMLKVKRYMEESGTRLIGPNCPG 124 (286)
T ss_pred -HHHHHHHHHHHCCCC-EEEEE-CCCCCHHHHHHHHHHHHHcCCEEECCCCce
Confidence 677777776653223 33343 3333333 3566677778899999865544
|
ATP citrate lyases appear to form an outgroup. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.011 Score=60.18 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=59.0
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChHHH--HHHHHhhcccCCCCeeeeC---CHHHHHhhcCCCcEEEEE
Q 010637 8 RIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKV--DETLDRAHREGQLPLTGHY---TPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~~--~~l~~~~~~~g~~~i~~~~---s~~e~v~~l~~advIil~ 79 (505)
||+|||+ |.+|..+|..|+..|+ ++.++|+++..- -.+.. .... .+++.+. ++.+..+ .+|+||++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~-~~~~--~~i~~~~~~~~~~~~~~---daDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSH-IPTA--ASVKGFSGEEGLENALK---GADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhc-CCcC--ceEEEecCCCchHHHcC---CCCEEEEe
Confidence 6999999 9999999999998886 799999987221 11111 1000 0233321 2233333 49999998
Q ss_pred cCCC----c-----------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 80 VKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.-.. . .++++...+..+ .++.+||..||-.
T Consensus 75 aG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPv 119 (312)
T TIGR01772 75 AGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPV 119 (312)
T ss_pred CCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 7432 1 233334455555 5777888888754
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.019 Score=58.71 Aligned_cols=93 Identities=12% Similarity=0.172 Sum_probs=58.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcC-CCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQ-RPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~-~advIil~vp~~~~ 85 (505)
.+|+|+|+|-+|..-.+.....|.+|+++||+++|.+.+.+.++.. ....+.++..+.++ ..|+||.+++ ...
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~-----~i~~~~~~~~~~~~~~~d~ii~tv~-~~~ 241 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH-----VINSSDSDALEAVKEIADAIIDTVG-PAT 241 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE-----EEEcCCchhhHHhHhhCcEEEECCC-hhh
Confidence 4799999997776555555558999999999999998888776542 22222222222221 2789999888 555
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++..++. |.++-.++-.+..
T Consensus 242 ~~~~l~~----l~~~G~~v~vG~~ 261 (339)
T COG1064 242 LEPSLKA----LRRGGTLVLVGLP 261 (339)
T ss_pred HHHHHHH----HhcCCEEEEECCC
Confidence 5544443 4444444444443
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.045 Score=52.16 Aligned_cols=79 Identities=13% Similarity=0.099 Sum_probs=52.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH-HHHHHHHhhcccCCCCeeeeCC-HHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHYT-PRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~s-~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|-|||.|.||...+..|.+.|++|++++++.. .+..+.+.+ .+..... +.+ ..+..+|+||.++.++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~------~i~~~~~~~~~--~~l~~adlViaaT~d~- 81 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEG------KIRWKQKEFEP--SDIVDAFLVIAATNDP- 81 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCC------CEEEEecCCCh--hhcCCceEEEEcCCCH-
Confidence 5799999999999999999999999999987653 334444332 1322211 111 1233489998888775
Q ss_pred hHHHHHHHHH
Q 010637 85 PVDQTIAALS 94 (505)
Q Consensus 85 ~v~~vl~~l~ 94 (505)
.+...+....
T Consensus 82 elN~~i~~~a 91 (202)
T PRK06718 82 RVNEQVKEDL 91 (202)
T ss_pred HHHHHHHHHH
Confidence 5665554443
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.01 Score=55.15 Aligned_cols=121 Identities=12% Similarity=0.094 Sum_probs=62.8
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+|.|||+|.||..++.+|++.|. +++++|.+.-....+..........+-.-+....+.++.+ .+++=+.+.+....
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~l-np~v~i~~~~~~~~- 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREI-NPFVKIEAINIKID- 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHH-CCCCEEEEEEeecC-
Confidence 58999999999999999999998 5999998862222221110000000000011111122221 14444544443211
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC-CCeEEeCCCC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK-GLLYLGMGVS 134 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~-gi~~i~~pvs 134 (505)
.. .+...++.-++||+++.. +..-..+.+.+.++ ++-|+.+...
T Consensus 79 ~~---~~~~~l~~~DlVi~~~d~-~~~r~~i~~~~~~~~~ip~i~~~~~ 123 (174)
T cd01487 79 EN---NLEGLFGDCDIVVEAFDN-AETKAMLAESLLGNKNKPVVCASGM 123 (174)
T ss_pred hh---hHHHHhcCCCEEEECCCC-HHHHHHHHHHHHHHCCCCEEEEehh
Confidence 11 222334556899999443 33333355555554 7777765433
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0078 Score=61.90 Aligned_cols=95 Identities=16% Similarity=0.217 Sum_probs=56.9
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEE--EeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISV--YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G~~V~v--~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+|++|+|+|+ |..|.-|.+.|.+++|++.- +-++.+...+........ +.+... +..++ +. +|++|+++|
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~--l~~~~~-~~~~~-~~---vD~vFla~p 75 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKN--LRVREV-DSFDF-SQ---VQLAFFAAG 75 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcc--eEEeeC-ChHHh-cC---CCEEEEcCC
Confidence 4579999996 99999999999988775432 222322221111110010 012212 22333 33 999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.+ ....++..+. ..|..|||.|+.+
T Consensus 76 ~~-~s~~~v~~~~---~~G~~VIDlS~~f 100 (336)
T PRK05671 76 AA-VSRSFAEKAR---AAGCSVIDLSGAL 100 (336)
T ss_pred HH-HHHHHHHHHH---HCCCeEEECchhh
Confidence 75 4454555443 3688999999865
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.026 Score=56.88 Aligned_cols=120 Identities=17% Similarity=0.174 Sum_probs=74.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh---HHHHHHHHhhcccCCCCeeeeCCHHH---HHhhcCCCcEEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT---SKVDETLDRAHREGQLPLTGHYTPRD---FVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~---~~~~~l~~~~~~~g~~~i~~~~s~~e---~v~~l~~advIil~ 79 (505)
.++.|||+|-.+++++..|+..|. +|+++||++ ++.+.+.+.........+. ..++++ +.+.+..+|+||-+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~-~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVT-VTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEE-EechhhhhhhhhhcccCCEEEEC
Confidence 469999999999999999999886 799999995 4777776543211000112 223322 22234458999999
Q ss_pred cCCCchH--HH-HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 80 VKAGSPV--DQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 80 vp~~~~v--~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+|.+..- +. .... ...++++.+++|.--.. ..| .+.+..+++|...++
T Consensus 204 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 204 TKVGMKPLENESLVND-ISLLHPGLLVTECVYNP-HMT-KLLQQAQQAGCKTID 254 (288)
T ss_pred CCCCCCCCCCCCCCCc-HHHCCCCCEEEEecCCC-ccC-HHHHHHHHCCCeEEC
Confidence 9876421 11 1100 12366788999986443 334 455666677766543
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.027 Score=48.53 Aligned_cols=105 Identities=11% Similarity=0.126 Sum_probs=60.4
Q ss_pred cccHHHHHHHHHHHhC----CCcEE-EEeCChHHHH-HHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 13 GLAVMGQNLALNVAEK----GFPIS-VYNRTTSKVD-ETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 13 GlG~MG~~lA~~La~~----G~~V~-v~dr~~~~~~-~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|.||+.++..|.+. +++|. +++|+ .... ....... +.....+++++++.. .+|+||-|.+. +.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~dvvVE~t~~-~~~ 72 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFP-----DEAFTTDLEELIDDP-DIDVVVECTSS-EAV 72 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHT-----HSCEESSHHHHHTHT-T-SEEEE-SSC-HHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcc-----cccccCCHHHHhcCc-CCCEEEECCCc-hHH
Confidence 8999999999999987 46655 67888 1110 0111111 135678999998843 39999999544 455
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCch---hHHHHHHHHHHCCCeE
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYL---NTERRIHEASQKGLLY 128 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~---~t~~~~~~l~~~gi~~ 128 (505)
.+.+ .+.|..|.-||..+..... .-.++.+..++.|.+|
T Consensus 73 ~~~~---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 73 AEYY---EKALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp HHHH---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred HHHH---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 4443 4456688888887766544 2222333444556654
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0091 Score=61.48 Aligned_cols=92 Identities=15% Similarity=0.237 Sum_probs=58.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcE---EEEeCChHHHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEEEEc
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPI---SVYNRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V---~v~dr~~~~~~~l~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIil~v 80 (505)
+++|+|||+ |..|..+.+.|.++||++ ....++.+.-+.+.-.+ . .+...+ +..++ + .+|+||+|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g-~----~i~v~d~~~~~~-~---~vDvVf~A~ 71 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG-K----ELKVEDLTTFDF-S---GVDIALFSA 71 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC-c----eeEEeeCCHHHH-c---CCCEEEECC
Confidence 368999996 999999999999988864 55544433222221111 1 123322 22222 3 389999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
|.+ ...++...+. ..|..|||.|+.+
T Consensus 72 g~g-~s~~~~~~~~---~~G~~VIDlS~~~ 97 (334)
T PRK14874 72 GGS-VSKKYAPKAA---AAGAVVIDNSSAF 97 (334)
T ss_pred ChH-HHHHHHHHHH---hCCCEEEECCchh
Confidence 987 4455555443 4678999998754
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.035 Score=55.89 Aligned_cols=117 Identities=15% Similarity=0.017 Sum_probs=78.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..||.|.|. |.+|..+..+|.+.||+ .+|=.+|.. .+++. ++..+.+++|+.+.. .+|+.+++||..
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v~---------G~~~y~sv~dlp~~~-~~DlAvi~vp~~ 76 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTVL---------GLPVFNTVAEAVEAT-GANASVIYVPPP 76 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeEe---------CeeccCCHHHHhhcc-CCCEEEEEcCHH
Confidence 468999997 88999999999999997 665455431 11111 367788998887621 269999999985
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
.+.+++++....--+ ..||-.+.-...+.+++.+..++.|++++++...|
T Consensus 77 -~v~~~l~e~~~~gvk-~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~G 126 (291)
T PRK05678 77 -FAADAILEAIDAGID-LIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPG 126 (291)
T ss_pred -HHHHHHHHHHHCCCC-EEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCc
Confidence 677777776653223 33333333332333467777788899999876554
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.031 Score=57.12 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=60.8
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCC--CcEEEEeCChHHHH--HHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKG--FPISVYNRTTSKVD--ETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G--~~V~v~dr~~~~~~--~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
+|.||+|||+ |.+|..+|..|+..+ .++.++|++....+ ++...... ..+...+++.+..+.++.+|+||++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~---~~v~~~td~~~~~~~l~gaDvVVit 83 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTP---AKVTGYADGELWEKALRGADLVLIC 83 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcC---ceEEEecCCCchHHHhCCCCEEEEC
Confidence 4569999999 999999999999655 58999999432211 22211111 1233333322222333449999998
Q ss_pred cCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCCCchhH
Q 010637 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (505)
.-... .++++++.+.++ .+..+|+-.||.....+
T Consensus 84 aG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv~~ 132 (321)
T PTZ00325 84 AGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNSTV 132 (321)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHH
Confidence 73321 122223344443 45667877777654433
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.043 Score=56.29 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=60.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChH--HHH----HHHHhh-cccCCCCeeeeCCHHHHHhhc
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTS--KVD----ETLDRA-HREGQLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~-------~V~v~dr~~~--~~~----~l~~~~-~~~g~~~i~~~~s~~e~v~~l 70 (505)
..||+|||+ |.+|..+|..|+..|. ++.++|++++ +++ ++.... .... +..+..+..+.+++
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~--~~~i~~~~y~~~~d- 80 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLA--GVVITDDPNVAFKD- 80 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcC--CcEEecChHHHhCC-
Confidence 458999998 9999999999998764 7999999543 221 122111 0000 12333333333333
Q ss_pred CCCcEEEEEcCC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 71 QRPRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 71 ~~advIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+|+||++.-. +. .++++...+..+..+..++|-.||-.
T Consensus 81 --aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 133 (326)
T PRK05442 81 --ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA 133 (326)
T ss_pred --CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence 9999997632 21 13444456666565677888887643
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.036 Score=58.84 Aligned_cols=110 Identities=17% Similarity=0.099 Sum_probs=66.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc--
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~-- 84 (505)
.+|.|||+|.+|.++|+.|.+.|++|+++|++++......... . ......+.+... +|+||.+.+...
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~--~-----~~~~~~~~~~~~---~dlvV~s~gi~~~~ 73 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIH--E-----RYLENAEEFPEQ---VDLVVRSPGIKKEH 73 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHh--h-----hhcCCcHHHhcC---CCEEEECCCCCCCc
Confidence 4799999999999999999999999999998876433211000 0 011233333343 788888764432
Q ss_pred -hHHHHH--------H-HH-Hhc--C-CCCcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 85 -PVDQTI--------A-AL-SEH--M-SPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 85 -~v~~vl--------~-~l-~~~--l-~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
.+.... + .+ ... + ....|-|.+|++...++.-+...+...|.
T Consensus 74 ~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~ 129 (418)
T PRK00683 74 PWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGI 129 (418)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 122221 1 11 111 1 22346677777777777667777777664
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.026 Score=55.00 Aligned_cols=121 Identities=14% Similarity=0.107 Sum_probs=71.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeC-CHHHH----HhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHY-TPRDF----VLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~-s~~e~----v~~l~~advIil~ 79 (505)
..+|.|||+|-.|+.++.+|+..|. +++++|.+.-....+..+.... .-..-. .-.++ +..+ .+++.+.+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~---~~dvG~~~k~~~a~~~l~~~-np~v~v~~ 102 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHW---EEDLGKNPKPLSAKWKLERF-NSDIKIET 102 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccC---hhhcCchHHHHHHHHHHHHh-CCCCEEEE
Confidence 3579999999999999999999996 6889988765544443221000 000000 01111 1211 27777777
Q ss_pred cCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
.+.. ..++-+++ .++.-++|||+.-. +..-..+.+.+.+.++.++.+.+.|
T Consensus 103 ~~~~-~~~~~~~~---~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 103 FVGR-LSEENIDE---VLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred Eecc-CCHHHHHH---HHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence 5543 11222233 34566899998766 3333334556677888888776654
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.019 Score=58.40 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=59.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChHH--HHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSK--VDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+ |.+|..+|..|+..|. ++.++|++..+ +-.+...... ..+..+ .+ .++.+.++.+|+||++.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~---~~i~~~~~~-~~~y~~~~daDivvita 76 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTP---AKVTGYLGP-EELKKALKGADVVVIPA 76 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCc---ceEEEecCC-CchHHhcCCCCEEEEeC
Confidence 58999999 9999999999998884 79999988111 1112111110 024432 22 11122233499999987
Q ss_pred CC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
-. +. .++++.+.+.++ .+..+||..||-.
T Consensus 77 G~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPv 120 (310)
T cd01337 77 GVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPV 120 (310)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 33 21 233333455555 4677888888753
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.05 Score=58.54 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=70.9
Q ss_pred cCCCCcEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChH-HHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEE
Q 010637 3 ASALSRIGLAGLAVMGQN-LALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 3 ~~~~~~IgIIGlG~MG~~-lA~~La~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~ 79 (505)
+...++|.|||+|..|.+ +|+.|.++|++|+++|.++. ..+.+.+.+ +... ....+.++ .+|+||.+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~g-------i~~~~~~~~~~~~---~~d~vv~s 73 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELG-------AIIFIGHDAENIK---DADVVVYS 73 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHCC---CCCEEEEC
Confidence 333468999999999999 89999999999999997653 233443322 3332 12223333 38988875
Q ss_pred c--CCCch-HHHHH---------HHHHh-cCC-CCcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 80 V--KAGSP-VDQTI---------AALSE-HMS-PGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 80 v--p~~~~-v~~vl---------~~l~~-~l~-~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
- |.+.+ +.... -+++. .+. ...|-|.+|++...++.-+...++..|.
T Consensus 74 pgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 74 SAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred CCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 3 33222 22211 12322 222 2357777888887777777788887774
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.046 Score=59.32 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=69.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEEEEc--CC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIILV--KA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIil~v--p~ 82 (505)
.+|.|+|+|..|.+.++.|...|++|+++|+++...+.+.+.+ +... ....+.+.. +|+||.+- |.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g-------~~~~~~~~~~~~l~~---~D~VV~SpGi~~ 82 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERG-------VATVSTSDAVQQIAD---YALVVTSPGFRP 82 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCC-------CEEEcCcchHhHhhc---CCEEEECCCCCC
Confidence 4799999999999999999999999999998877665544432 2222 222333333 89888864 33
Q ss_pred Cch-HHHHHH---------HHHhcC------C-C-CcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 83 GSP-VDQTIA---------ALSEHM------S-P-GDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 83 ~~~-v~~vl~---------~l~~~l------~-~-g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
..+ +...-+ ++.-.+ . + .-|-|.+||+...++.-+...+...|...
T Consensus 83 ~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~ 146 (488)
T PRK03369 83 TAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRS 146 (488)
T ss_pred CCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCce
Confidence 222 111110 121111 1 2 24557777777766666777787776543
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0057 Score=54.22 Aligned_cols=123 Identities=16% Similarity=0.208 Sum_probs=70.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|.|+|+|.+|+.+|.+|+..|. ++.++|.+.=....+..... .....+..-+...++.+..+ .|++=+.+.+..-
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~-np~~~v~~~~~~~ 81 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEI-NPDVEVEAIPEKI 81 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHH-STTSEEEEEESHC
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHh-cCceeeeeeeccc
Confidence 589999999999999999999998 69999987532222211100 00000011112223333322 1445555555532
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
....+..+. ..-++||+++.. +.....+.+.+.++++.|+.+.+.|
T Consensus 82 -~~~~~~~~~---~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 82 -DEENIEELL---KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp -SHHHHHHHH---HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred -ccccccccc---cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 233334444 345899998765 4455567778888899999877654
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.036 Score=56.49 Aligned_cols=97 Identities=19% Similarity=0.253 Sum_probs=58.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHh---CCCcEEEEeCChHHH---HHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEE
Q 010637 7 SRIGLAGL-AVMGQNLALNVAE---KGFPISVYNRTTSKV---DETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~---~G~~V~v~dr~~~~~---~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIi 77 (505)
|||+|||+ |.+|..++..|.. .++++.++|+++... -.+...... ..+.. .+++.+.+ +.+|+||
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~---~~i~~~~~~d~~~~l---~~~DiVI 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTA---VKIKGFSGEDPTPAL---EGADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCC---ceEEEeCCCCHHHHc---CCCCEEE
Confidence 58999999 9999999988854 356899999986431 112111100 02332 23433333 4499999
Q ss_pred EEcCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 78 ILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 78 l~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
++.-... .++++++.+.++ .+..+|+..||-.
T Consensus 75 itaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~ 121 (312)
T PRK05086 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPV 121 (312)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 9984311 233444555554 4667888887754
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.015 Score=58.02 Aligned_cols=74 Identities=22% Similarity=0.321 Sum_probs=58.1
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~-MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||-|. +|.++|..|.++|..|+++++.. .++++.+.. +|+||.++.....
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---------------------~~l~~~~~~---ADIvi~avG~p~~ 215 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---------------------KNLRHHVRN---ADLLVVAVGKPGF 215 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---------------------CCHHHHHhh---CCEEEEcCCCccc
Confidence 5799999988 99999999999999999997542 245556665 9999999965543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 216 v~~------~~vk~gavVIDvGin~ 234 (285)
T PRK10792 216 IPG------EWIKPGAIVIDVGINR 234 (285)
T ss_pred ccH------HHcCCCcEEEEccccc
Confidence 332 4578999999998653
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.024 Score=57.98 Aligned_cols=100 Identities=16% Similarity=0.200 Sum_probs=58.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChHHH--HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKV--DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~~--~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.||+|||+ |.+|..+|..|+..+. ++.++|+++... .++...... ..+....+..+..+.++.+|+||++.-
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~---~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTP---AQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcC---ceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 58999999 9999999999997765 899999987211 112111110 023322233223334445999999863
Q ss_pred C----CchHH-----------HHHHHHHhcCCCCcEEEecCCCC
Q 010637 82 A----GSPVD-----------QTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~----~~~v~-----------~vl~~l~~~l~~g~iIId~st~~ 110 (505)
. +..-+ ++++.+..+ .+..+|+..||-.
T Consensus 96 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPv 138 (323)
T PLN00106 96 VPRKPGMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPV 138 (323)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCc
Confidence 2 22222 222333333 3666777777754
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.018 Score=58.52 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=49.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp 81 (505)
|+|.|+| .|.+|+.++..|.++||+|.+.+|++++...+...+. .+.. ..+++.+.+.++.+|+||.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v-----~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGA-----ELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCC-----EEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4899998 5999999999999999999999999876544433221 1111 1245555555666899888754
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.031 Score=57.25 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=58.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChHH--HHH----HHHhh-cccCCCCeeeeCCHHHHHhhcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VDE----TLDRA-HREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~-------~V~v~dr~~~~--~~~----l~~~~-~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
+||+|||+ |.+|.++|..|+..|. ++.++|++++. ++. +.... .... ++.+..+..+.+++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~--~~~i~~~~~~~~~d-- 78 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLA--EIVITDDPNVAFKD-- 78 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccC--ceEEecCcHHHhCC--
Confidence 48999999 9999999999998876 79999995432 221 11110 0000 12333333233333
Q ss_pred CCcEEEEEcCC----Cch-----------HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 72 RPRSVIILVKA----GSP-----------VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 72 ~advIil~vp~----~~~-----------v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+|+||++.-. +.. ++++...+..+-++..++|..||-
T Consensus 79 -aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (322)
T cd01338 79 -ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNP 130 (322)
T ss_pred -CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCc
Confidence 9999998632 211 344445666655456777777753
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.042 Score=57.90 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=73.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCC----------hHHHHHHHHhhcccCCC-CeeeeCCHHHHHhhcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRT----------TSKVDETLDRAHREGQL-PLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~-v~dr~----------~~~~~~l~~~~~~~g~~-~i~~~~s~~e~v~~l~~ad 74 (505)
++|+|.|+|++|+.+|+.|.+.|.+|. +.|.+ .+.+.+..++...-.++ +... -+.+++... +||
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~-i~~~e~l~~--~~D 283 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDP-IDPDDILVE--PCD 283 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceE-ecCccceec--ccc
Confidence 589999999999999999999999988 77876 55543333322110000 1111 133444332 489
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+++-|--.+....+.+.. + +=++|+...|... |.+..+.|.++|+.|+.
T Consensus 284 vliP~Al~~~I~~~na~~----i-~ak~I~egAN~p~--t~ea~~~L~~rGI~~~P 332 (410)
T PLN02477 284 VLIPAALGGVINKENAAD----V-KAKFIVEAANHPT--DPEADEILRKKGVVVLP 332 (410)
T ss_pred EEeeccccccCCHhHHHH----c-CCcEEEeCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 888775544322233333 3 4578999988865 66677889999998874
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.041 Score=58.51 Aligned_cols=117 Identities=10% Similarity=0.026 Sum_probs=77.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEE-e----------CChHHHHHHHHhhc--ccCC---CCeeeeCCHHHHHhhc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVY-N----------RTTSKVDETLDRAH--REGQ---LPLTGHYTPRDFVLSI 70 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~-d----------r~~~~~~~l~~~~~--~~g~---~~i~~~~s~~e~v~~l 70 (505)
++|+|.|.|++|..+|+.|.+.|.+|... | .+.+.+.+..+... -.+. .+... .+.+++...
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~-i~~~~i~~~- 310 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEY-LEGGSPWSV- 310 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCee-cCCcccccc-
Confidence 58999999999999999999999998876 7 56665544443210 0000 00111 133333331
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 71 QRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.||+++-|...+....+....+.+ .+=++|+...|... |.+..+.|.++|+.++.
T Consensus 311 -d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~--t~~A~~~L~~rGI~~vP 365 (445)
T PRK09414 311 -PCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPS--TPEAIEVFLEAGVLFAP 365 (445)
T ss_pred -CCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 489999998876555555555543 13478888888764 66677889999998874
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.028 Score=47.76 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHH-HHHHHHh
Q 010637 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQ-TIAALSE 95 (505)
Q Consensus 17 MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~-vl~~l~~ 95 (505)
-+..|+..|.+.|.+|.+||..-........... . +++.++++++.++. +|.||++++... .+. -.+.+..
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~-~---~~~~~~~~~~~~~~---~D~vvl~t~h~~-f~~l~~~~~~~ 89 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKL-E---GVEVCDDLEEALKG---ADAVVLATDHDE-FRELDWEEIAK 89 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHH-H---CEEEESSHHHHHTT---ESEEEESS--GG-GGCCGHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCc-c---ceEEecCHHHHhcC---CCEEEEEecCHH-HhccCHHHHHH
Confidence 4567899999999999999988765443331100 1 37788899998887 999999998864 443 3467777
Q ss_pred cCCCCcEEEecCCCC
Q 010637 96 HMSPGDCIIDGGNEW 110 (505)
Q Consensus 96 ~l~~g~iIId~st~~ 110 (505)
.+.++.+|+|+-+..
T Consensus 90 ~~~~~~~iiD~~~~~ 104 (106)
T PF03720_consen 90 LMRKPPVIIDGRNIL 104 (106)
T ss_dssp HSCSSEEEEESSSTS
T ss_pred hcCCCCEEEECcccc
Confidence 788899999987754
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.016 Score=53.73 Aligned_cols=83 Identities=17% Similarity=0.280 Sum_probs=58.6
Q ss_pred CCCcEEEEcccHHHHHHHHH-HH-hCCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 5 ALSRIGLAGLAVMGQNLALN-VA-EKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~-La-~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+.++.|||.|++|++++.. +. ++|+++. +||.+++++-..... ..+.-.+++++.++. .+.|+.|+|||
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~------v~V~~~d~le~~v~~-~dv~iaiLtVP 155 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD------VPVYDLDDLEKFVKK-NDVEIAILTVP 155 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCC------eeeechHHHHHHHHh-cCccEEEEEcc
Confidence 45689999999999999843 44 6788765 789999876443322 124445667777764 14799999999
Q ss_pred CCchHHHHHHHHHh
Q 010637 82 AGSPVDQTIAALSE 95 (505)
Q Consensus 82 ~~~~v~~vl~~l~~ 95 (505)
+. ....+.+.|..
T Consensus 156 a~-~AQ~vad~Lv~ 168 (211)
T COG2344 156 AE-HAQEVADRLVK 168 (211)
T ss_pred HH-HHHHHHHHHHH
Confidence 95 56777776665
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.056 Score=55.08 Aligned_cols=124 Identities=21% Similarity=0.260 Sum_probs=74.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--------CCcEE---EEeCChHHHHHHHHhhcccCCCCeeeeCCH-----HHHHhh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK--------GFPIS---VYNRTTSKVDETLDRAHREGQLPLTGHYTP-----RDFVLS 69 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~--------G~~V~---v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~-----~e~v~~ 69 (505)
.++|+|+|+|.+|+++++-|.++ |.++. +.+|+..+...+.-... ....+++ .+++..
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 76 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNA------EVWTTDGALSLGDEVLLD 76 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccch------hhheecccccccHhhhcc
Confidence 46899999999999999999875 33433 45776655431110000 1122233 344432
Q ss_pred cCCCcEEEEEcCC-CchHHHHHHHHHhcCCCCcEEEecCCCCchhHH--HHHHHHHHCCCe-EEeCCCCCCHH
Q 010637 70 IQRPRSVIILVKA-GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTE--RRIHEASQKGLL-YLGMGVSGGEE 138 (505)
Q Consensus 70 l~~advIil~vp~-~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~--~~~~~l~~~gi~-~i~~pvsGg~~ 138 (505)
+..|+|+.+++. -...+. ++.+...+..|..||...... -... ++.+..++.|.. +.++.|.||.+
T Consensus 77 -~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~-lA~~~~el~~~A~~~g~~l~yEAtV~gGiP 146 (333)
T COG0460 77 -EDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKAL-LALHYHELREAAEKNGVKLLYEATVGGGIP 146 (333)
T ss_pred -ccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchH-hHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence 346899998877 445565 677778888999888544332 2222 234444555654 46777777754
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.018 Score=57.81 Aligned_cols=73 Identities=12% Similarity=0.273 Sum_probs=54.7
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~-MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||.|. .|.+++..|.+.|.+|++++|... ++.+.+.. +|+||.+++.+..
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~---------------------~L~~~~~~---aDIvI~AtG~~~~ 215 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ---------------------NLPELVKQ---ADIIVGAVGKPEL 215 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch---------------------hHHHHhcc---CCEEEEccCCCCc
Confidence 4799999997 999999999999999999997321 22223333 9999999965432
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++ . +.+++|.+|+|.+..
T Consensus 216 v~---~---~~lk~gavViDvg~n 233 (283)
T PRK14192 216 IK---K---DWIKQGAVVVDAGFH 233 (283)
T ss_pred CC---H---HHcCCCCEEEEEEEe
Confidence 22 1 347899999998764
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.016 Score=58.65 Aligned_cols=75 Identities=33% Similarity=0.582 Sum_probs=59.2
Q ss_pred HHHHHHHHhccC-CcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 219 ELAEIFDEWNKG-ELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 219 ~i~~v~~~~~~g-~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
+..++++-|+.+ .++|++++...+++.. +++ .+.++.+.||. ++++|+++.|.+.|+|+|++..+++.|+.+.
T Consensus 201 d~~~~~~~~~~~~~~~s~~l~~~~~~~~~-~~~--~~~l~~~~KD~---~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~ 274 (299)
T PRK12490 201 DVEDVARLWRNGSVIRSWLLDLTVKALAE-DPK--LAGIKGYVNDS---GEGRWTVEEAIELAVAAPVIAASLFMRFASQ 274 (299)
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHhh-CCC--hhhhhHHHHhc---CcHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 577788889864 5899999998888754 322 25677777764 4667999999999999999999877888887
Q ss_pred ch
Q 010637 298 LK 299 (505)
Q Consensus 298 ~~ 299 (505)
.+
T Consensus 275 ~~ 276 (299)
T PRK12490 275 ED 276 (299)
T ss_pred cc
Confidence 65
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.049 Score=49.76 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=50.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|-|||.|.+|...++.|.+.|++|++++ ++..+++.+.. .+... ..+++ ..+..+|+||.++.++ .
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~------~i~~~~~~~~~--~dl~~a~lViaaT~d~-e 82 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELP------YITWKQKTFSN--DDIKDAHLIYAATNQH-A 82 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhcc------CcEEEecccCh--hcCCCceEEEECCCCH-H
Confidence 579999999999999999999999999995 34444444321 12221 11111 1244589888887664 5
Q ss_pred HHHHHHHHH
Q 010637 86 VDQTIAALS 94 (505)
Q Consensus 86 v~~vl~~l~ 94 (505)
+...+....
T Consensus 83 ~N~~i~~~a 91 (157)
T PRK06719 83 VNMMVKQAA 91 (157)
T ss_pred HHHHHHHHH
Confidence 666664443
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.094 Score=56.34 Aligned_cols=113 Identities=15% Similarity=0.043 Sum_probs=67.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
++|.|||+|..|.+.|..|.+.|++|.++|+.+.....+.+.+ +.......+.+. .+|+||.+ +|...
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g-------~~~~~~~~~~~~---~~d~vv~sp~i~~~~ 79 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAG-------ITTADLRTADWS---GFAALVLSPGVPLTH 79 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcC-------ccccCCChhHHc---CCCEEEECCCCCccC
Confidence 5799999999999999999999999999998765444443322 222221112223 38988763 23221
Q ss_pred -----hHHHHHH---------HHHhcC------CCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 85 -----PVDQTIA---------ALSEHM------SPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 85 -----~v~~vl~---------~l~~~l------~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
.+....+ ++.... ....|-|.+|++...++.-+...++..|..+.
T Consensus 80 ~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~ 144 (460)
T PRK01390 80 PKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQ 144 (460)
T ss_pred CcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeE
Confidence 2332221 111111 22345566777776666666777777776543
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.098 Score=53.58 Aligned_cols=98 Identities=13% Similarity=0.181 Sum_probs=59.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--HHHHHHH----Hhh-cccCCCCeeeeCCHHHHHhhcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTT--SKVDETL----DRA-HREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~-------~V~v~dr~~--~~~~~l~----~~~-~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
.||+|||+ |.+|.++|..|...|. ++.++|+++ ++++... ... .... +..+..+..+.+++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~--~~~i~~~~~~~~~d-- 79 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLA--GVVATTDPEEAFKD-- 79 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccC--CcEEecChHHHhCC--
Confidence 48999998 9999999999998885 799999964 2222211 111 0000 12232333233333
Q ss_pred CCcEEEEEcCC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 72 RPRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 72 ~advIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+|+||++.-. +. .++++...+.++-++..++|..||-
T Consensus 80 -aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 131 (323)
T TIGR01759 80 -VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNP 131 (323)
T ss_pred -CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 9999998632 21 1444446666665557777777764
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.011 Score=56.95 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=51.3
Q ss_pred CcEEEEcccHHHHHHHHHH--HhCCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNV--AEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~L--a~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.+|+|||+|.+|..++..+ ...|+++. ++|+++++...... + ..+....++.+++.. ..+|.+++++|..
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~-g-----~~v~~~~~l~~li~~-~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIG-G-----IPVYHIDELEEVVKE-NDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeC-C-----eEEcCHHHHHHHHHH-CCCCEEEEeCCch
Confidence 4799999999999999863 35688776 57988766432211 0 012223455565543 2489999999986
Q ss_pred chHHHHHHHHH
Q 010637 84 SPVDQTIAALS 94 (505)
Q Consensus 84 ~~v~~vl~~l~ 94 (505)
. ..++.+.+.
T Consensus 158 ~-~~~i~~~l~ 167 (213)
T PRK05472 158 A-AQEVADRLV 167 (213)
T ss_pred h-HHHHHHHHH
Confidence 4 445544443
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.02 Score=58.86 Aligned_cols=111 Identities=16% Similarity=0.220 Sum_probs=72.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-C-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEK-G-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.++|.|+|+ |.||+.+++.|+.+ | .+|.+++|+.++...+..+... .. ..++++... .+|+|+.+...
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~-----~~-i~~l~~~l~---~aDiVv~~ts~ 225 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG-----GK-ILSLEEALP---EADIVVWVASM 225 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc-----cc-HHhHHHHHc---cCCEEEECCcC
Confidence 357999998 89999999999864 5 5899999999888887654321 01 124444444 49999988755
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (505)
...+ +++. ..+.++.++||.+- |.+..... ...|++.++.++.
T Consensus 226 ~~~~--~I~~--~~l~~~~~viDiAv--PRDVd~~v---~~~~V~v~~gG~V 268 (340)
T PRK14982 226 PKGV--EIDP--ETLKKPCLMIDGGY--PKNLDTKV---QGPGIHVLKGGIV 268 (340)
T ss_pred CcCC--cCCH--HHhCCCeEEEEecC--CCCCCccc---CCCCEEEEeCCcc
Confidence 3221 1211 13468899999854 44443221 2357888776543
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.026 Score=53.70 Aligned_cols=125 Identities=13% Similarity=0.232 Sum_probs=70.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc-cc--CCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-RE--GQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~-~~--g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
..+|.|||+|.+|..++.+|+..|. +++++|.+.-....+..... .. ...+..-+....+.+..+ .|++-+..+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~l-Np~v~i~~~~ 97 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQEL-NPNVKLSIVE 97 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHH-CCCCEEEEEe
Confidence 3689999999999999999999997 58899877532222221100 00 000000011112222222 2666666665
Q ss_pred CCch-HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 82 AGSP-VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 82 ~~~~-v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
.... ..+-... .+.+=++||++... +.....+.+.+.++++-|+.+.+.|
T Consensus 98 ~~~~~~~~~~~~---~~~~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 98 EDSLSNDSNIEE---YLQKFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred cccccchhhHHH---HHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 4311 0111222 23455899988543 4555556778888888888776544
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.042 Score=62.01 Aligned_cols=108 Identities=9% Similarity=0.107 Sum_probs=77.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHHHh--------hcCC-c
Q 010637 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGA--------RHGP-S 145 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~~a--------~~G~-~ 145 (505)
||+|+|.. .+.+++.++.+.++++.+|.|.+++...-.....+.+......|++. |+.|.+..- ..|. .
T Consensus 1 vila~Pv~-~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVA-QTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHH-HHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 68999995 78999999999999999999999998655555544444323569986 777775322 2454 3
Q ss_pred ccc---CCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhH
Q 010637 146 LMP---GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMV 190 (505)
Q Consensus 146 im~---gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v 190 (505)
+++ ..+.++++.++++++.+| ..++.+.+...-..+-++
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~G------a~~~~~~~~~HD~~~A~i 121 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAAR------ADVRAMSAEQHDRVFAAV 121 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcC------CEEEECCHHHHHHHHHHH
Confidence 333 346789999999999999 567777775544444443
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.11 Score=55.54 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=72.8
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH--HHHHHHHhhcccCCCCeeee---CCHHHHHhhcCCCcEEEEEc--
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS--KVDETLDRAHREGQLPLTGH---YTPRDFVLSIQRPRSVIILV-- 80 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~--~~~~l~~~~~~~g~~~i~~~---~s~~e~v~~l~~advIil~v-- 80 (505)
.|.|||+|..|.++|+.|.+.|++|+++|..+. ..+++.+... ++... .+. +.+.. +|+||.+-
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~-----g~~~~~~~~~~-~~~~~---~d~vV~sp~i 78 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFP-----DVELRCGGFDC-ELLVQ---ASEIIISPGL 78 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcC-----CcEEEeCCCCh-HHhcC---CCEEEECCCC
Confidence 599999999999999999999999999997653 2233433110 12232 233 33344 88887643
Q ss_pred CCCch-HHHHH---------HHHHhc-CCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 81 KAGSP-VDQTI---------AALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 81 p~~~~-v~~vl---------~~l~~~-l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
|.+.+ +...- -+++.. +....|-|-+|++...++.-+...|...|..+.-.+..|.+
T Consensus 79 ~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p 146 (448)
T PRK03803 79 ALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTP 146 (448)
T ss_pred CCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHH
Confidence 33222 22111 123322 33335667777777777776777888777655544444443
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.025 Score=54.62 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=52.6
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChH--HHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEEcCC
Q 010637 9 IGLAGL-AVMGQNLALNVAEKGFPISVYNRTTS--KVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 9 IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~--~~~~l~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~vp~ 82 (505)
|.|+|. |.+|+.++..|.+.+++|.+.-|++. ..+.+.+.+... +.. ..+.+.+.+.|+.+|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~v----v~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEV----VEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEE----EES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceE----eecccCCHHHHHHHHcCCceEEeecCc
Confidence 789996 99999999999999999999999874 355555544321 111 24667777778889999999984
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.072 Score=56.70 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=63.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-------CC--cEEEEeCChHHHHHHHHhhccc--CC-CCeeee-CCHHHHHhhcCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEK-------GF--PISVYNRTTSKVDETLDRAHRE--GQ-LPLTGH-YTPRDFVLSIQR 72 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~-------G~--~V~v~dr~~~~~~~l~~~~~~~--g~-~~i~~~-~s~~e~v~~l~~ 72 (505)
-||+|||+ |.+|..+|..|+.. |. ++.++|++.++++...-..... .. .++.+. .+.+++.+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd---- 176 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD---- 176 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc----
Confidence 48999999 99999999999988 65 7889999998765433211100 00 024433 44444433
Q ss_pred CcEEEEEcCC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 73 PRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 73 advIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+|+||++.-. +. .++++...|.++..++.+||..||-
T Consensus 177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNP 228 (444)
T PLN00112 177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNP 228 (444)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence 9999998633 21 1334445555544567778888764
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.093 Score=50.16 Aligned_cols=72 Identities=10% Similarity=0.045 Sum_probs=49.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH-HHHHHHHhhcccCCCCeeee---CCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGH---YTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~---~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|.|||.|.+|..-+..|.+.|.+|++++.+.. .+..+.+.+ ++... ....+ ++ .+++||.++.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~------~i~~~~~~~~~~d-l~---~~~lVi~at~d 79 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQG------GITWLARCFDADI-LE---GAFLVIAATDD 79 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcC------CEEEEeCCCCHHH-hC---CcEEEEECCCC
Confidence 5799999999999999999999999999987654 344454433 23332 13333 23 38888888665
Q ss_pred CchHHHH
Q 010637 83 GSPVDQT 89 (505)
Q Consensus 83 ~~~v~~v 89 (505)
. .+..-
T Consensus 80 ~-~ln~~ 85 (205)
T TIGR01470 80 E-ELNRR 85 (205)
T ss_pred H-HHHHH
Confidence 4 34433
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.054 Score=55.89 Aligned_cols=124 Identities=12% Similarity=0.148 Sum_probs=70.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhccc-CCC--CeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQL--PLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~--~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
..+|.|||+|.+|..+|.+|++.|. ++.++|.+.-....+..+.... ... +..-+....+.+..+ .+++-+....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i-np~v~v~~~~ 102 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI-NSDVRVEAIV 102 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH-CCCcEEEEEe
Confidence 3589999999999999999999998 8999999864433332211000 000 000011112222222 1566566654
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
.... ..-+. +.+..-|+|||++.. +.....+.+.+.+.++-++.+.+.|
T Consensus 103 ~~~~-~~~~~---~~~~~~DlVid~~Dn-~~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 103 QDVT-AEELE---ELVTGVDLIIDATDN-FETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred ccCC-HHHHH---HHHcCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEeeee
Confidence 4321 22222 334566999999764 3444445566677788777665443
|
|
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.062 Score=44.87 Aligned_cols=87 Identities=13% Similarity=0.166 Sum_probs=59.6
Q ss_pred chhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhh
Q 010637 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDK 262 (505)
Q Consensus 183 ~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~ 262 (505)
.+.++|++.|++.+..+++++|...++++.| +|..++.+.+. ...--+ ...+.-.-.+++. -+-+|
T Consensus 3 ~AEl~K~~~N~~~a~~iaf~Nel~~lce~~g-iD~~~V~~~~~---~d~ri~------~~~~~pg~g~GG~----ClpkD 68 (96)
T PF00984_consen 3 EAELIKYAENAFRATKIAFANELARLCEKLG-IDVYEVIEAAN---TDPRIG------PHYLRPGPGFGGS----CLPKD 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHHHHH---TSTTTT------SSS-S-SSS--SS----CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHc---cCcccc------cccCCCCCCCCCc----chhhh
Confidence 5789999999999999999999999999998 99999999873 211000 1122111113332 33344
Q ss_pred hCCCchHHHHHHHHHHcCCCcchHHHH
Q 010637 263 TGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 263 ~~~kgtg~~~~~~A~~~gvp~p~i~~a 289 (505)
.. .....+.++|++.+++.++
T Consensus 69 ~~------~L~~~~~~~g~~~~ll~~~ 89 (96)
T PF00984_consen 69 PY------ALIYLAKELGYPPQLLEAV 89 (96)
T ss_dssp HH------HHHHHHHHTTSHHHHHHHH
T ss_pred HH------HHHHHHHHcCCCHHHHHHH
Confidence 42 5667899999998877654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.16 Score=54.28 Aligned_cols=115 Identities=16% Similarity=0.092 Sum_probs=68.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH----HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc--
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK----VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV-- 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~----~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v-- 80 (505)
++|.|+|.|.+|.+.|+.|++.|++|+++|++... .+.+.+.+. .+.......++... .+|+||.+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~-----~~~~~~~~~~~~~~--~~d~vV~s~gi 78 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGI-----KVICGSHPLELLDE--DFDLMVKNPGI 78 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCC-----EEEeCCCCHHHhcC--cCCEEEECCCC
Confidence 47999999999999999999999999999987532 233333221 12222334443321 278777754
Q ss_pred CCCch-HHHHH---------HHHHhcC-CCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 81 KAGSP-VDQTI---------AALSEHM-SPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 81 p~~~~-v~~vl---------~~l~~~l-~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
|.+.. ++... .++...+ ....|-|.+|++...++.-+...|...|...
T Consensus 79 ~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~ 137 (447)
T PRK02472 79 PYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHA 137 (447)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCe
Confidence 33322 22221 1222222 3345667777777666666777777766543
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.14 Score=55.65 Aligned_cols=116 Identities=15% Similarity=0.067 Sum_probs=69.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH--HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS--KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~--~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
.+|.|+|+|..|.++|+.|.+.|++|+++|.... ..+.+.+.+... .+.......+.++. +|+||.. +|.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~---~~~~g~~~~~~~~~---~d~vv~sp~I~~ 81 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDA---EFVGGPFDPALLDG---VDLVALSPGLSP 81 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCc---EEEeCCCchhHhcC---CCEEEECCCCCC
Confidence 4799999999999999999999999999997542 233444332110 12222222344444 8988886 444
Q ss_pred C-----chHHHH-------------HHHHHhcC-----CCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 83 G-----SPVDQT-------------IAALSEHM-----SPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 83 ~-----~~v~~v-------------l~~l~~~l-----~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
. ..+... +..+...+ .+..|-|-+||+.-.++.-+...|...|...
T Consensus 82 ~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~ 150 (498)
T PRK02006 82 LEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKV 150 (498)
T ss_pred cccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCE
Confidence 2 111111 11222111 1235667778887777777777888777644
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.051 Score=52.48 Aligned_cols=47 Identities=19% Similarity=0.390 Sum_probs=38.6
Q ss_pred CCcCCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 1 MEASALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 1 m~~~~~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
|....++++-|.|. |.+|..++..|+++|++|.+.+|++++.+.+.+
T Consensus 1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (241)
T PRK07454 1 MSLNSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAA 48 (241)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 55555567888875 999999999999999999999999887665543
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.028 Score=54.04 Aligned_cols=121 Identities=13% Similarity=0.173 Sum_probs=63.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+|.|||+|.+|..+|.+|++.|.. ++++|.+.=....+..........+-.-+....+-++.+ .+++-+..++..
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~l-np~v~v~~~~~~- 105 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEI-NPFVEIEAHNEK- 105 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHH-CCCCEEEEEeee-
Confidence 35799999999999999999999985 999998842222221110000000000011111112211 145555555432
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC-CCeEEeCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK-GLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~-gi~~i~~p 132 (505)
.....+++ .+..-++|||++-. +.....+.+.+.++ ++.++.+.
T Consensus 106 i~~~~~~~---~~~~~DvVI~a~D~-~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 106 IDEDNIEE---LFKDCDIVVEAFDN-AETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred cCHHHHHH---HHcCCCEEEECCCC-HHHHHHHHHHHHHhCCCCEEEee
Confidence 11222222 34456899999543 33334455666666 77777653
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.06 Score=54.35 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=78.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
+.++.+|.++|.+..+.+++++|++.+-++. ++|.+++.++.+.| -.+|++++.....+.+. +. ++.
T Consensus 163 G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~------Gld~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-~~-----~~~ 229 (292)
T PRK15059 163 GDGQTCKVANQIIVALNIEAVSEALLFASKA------GADPVRVRQALMGG-FASSRILEVHGERMIKR-TF-----NPG 229 (292)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHcC-cccCHHHHhhchhhhcC-CC-----CCC
Confidence 5778999999999999999999999887753 39999999999877 46788777554333222 11 122
Q ss_pred HHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 010637 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTY 444 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~ 444 (505)
|. +.-...+++-++..|-+.|+|+|...++..+|+..
T Consensus 230 f~--l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a 266 (292)
T PRK15059 230 FK--IALHQKDLNLALQSAKALALNLPNTATCQELFNTC 266 (292)
T ss_pred Cc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 32 23345677899999999999999999888877653
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.032 Score=51.07 Aligned_cols=75 Identities=19% Similarity=0.387 Sum_probs=51.0
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG-~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||-+ .+|.+++..|.++|..|++++... .++++.++. +|+||.++.....
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------------------~~l~~~~~~---ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------------------KNLQEITRR---ADIVVSAVGKPNL 92 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------------------SSHHHHHTT---SSEEEE-SSSTT-
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------------------Ccccceeee---ccEEeeeeccccc
Confidence 579999986 699999999999999999987553 244555555 9999999977543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
++ ...+++|.+|||++....
T Consensus 93 i~------~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 93 IK------ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp B-------GGGS-TTEEEEE--CEEE
T ss_pred cc------cccccCCcEEEecCCccc
Confidence 22 235789999999988654
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.047 Score=55.95 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=58.5
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--HHHHHHHHhhccc--CCC-CeeeeCCHHHHHhhcCCCc
Q 010637 8 RIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTT--SKVDETLDRAHRE--GQL-PLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~G~-------~V~v~dr~~--~~~~~l~~~~~~~--g~~-~i~~~~s~~e~v~~l~~ad 74 (505)
||+|||+ |.+|..+|..|+..|. ++.++|+++ ++++.......+. ... +.....+..+.++. +|
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~---aD 78 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD---VD 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC---CC
Confidence 7999999 9999999999998663 599999987 5432211100000 000 12232344444444 99
Q ss_pred EEEEEcCC----Cch-----------HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 75 SVIILVKA----GSP-----------VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 75 vIil~vp~----~~~-----------v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+||++--. +.. ++++...+.++..++.++|-.||-
T Consensus 79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 128 (323)
T cd00704 79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNP 128 (323)
T ss_pred EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 99997622 222 344445666654466667667653
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.11 Score=56.07 Aligned_cols=111 Identities=17% Similarity=0.101 Sum_probs=66.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH-HH----HHHHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KV----DETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~-~~----~~l~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIil~ 79 (505)
.+|.|||.|..|..+|..|++.|++|+++|+++. .. +.+.+.+ +... .... .. ..+|+||++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~g-------v~~~~~~~~~-~~---~~~D~Vv~s 85 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALG-------ATVRLGPGPT-LP---EDTDLVVTS 85 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcC-------CEEEECCCcc-cc---CCCCEEEEC
Confidence 4799999999999999999999999999996643 22 2233322 3222 2222 22 238999887
Q ss_pred c---CCCchHHHHH---------HHHH-hcCCC----CcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 80 V---KAGSPVDQTI---------AALS-EHMSP----GDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 80 v---p~~~~v~~vl---------~~l~-~~l~~----g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
. |....+...- -+++ ..+.+ ..|-|.+|++...++.-+...+...|...
T Consensus 86 ~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~ 151 (480)
T PRK01438 86 PGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRA 151 (480)
T ss_pred CCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCe
Confidence 6 2222111111 1222 22222 23667777777666666777777766543
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.046 Score=54.65 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=56.7
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG-~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||-| .+|.++|..|.++|..|++++... .++.+.++. +|+||.++....-
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t---------------------~~l~~~~~~---ADIvV~AvG~p~~ 213 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT---------------------KDLSFYTQN---ADIVCVGVGKPDL 213 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc---------------------HHHHHHHHh---CCEEEEecCCCCc
Confidence 579999998 999999999999999999985332 133445555 9999999977543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. . ..+++|.+|||.+...
T Consensus 214 i~---~---~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 214 IK---A---SMVKKGAVVVDIGINR 232 (285)
T ss_pred CC---H---HHcCCCcEEEEeeccc
Confidence 22 1 2468999999998754
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.065 Score=54.31 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=59.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHh----hcccCCCCeeeeC--CHHHHHhhcCCCcEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR----AHREGQLPLTGHY--TPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~----~~~~g~~~i~~~~--s~~e~v~~l~~advIil 78 (505)
+||+|||+|.+|.++|..|...+. ++.++|++.++++-.... ....+ ....... +.+++ +.+|+|++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~-~~~~i~~~~~y~~~----~~aDiVvi 75 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLG-SDVKITGDGDYEDL----KGADIVVI 75 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhcc-CceEEecCCChhhh----cCCCEEEE
Confidence 489999999999999999987764 799999996554322211 10000 0223333 34443 33999999
Q ss_pred Ec----CCCc-----------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 79 LV----KAGS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 79 ~v----p~~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. +++. .++++..++.... ++.+++-.||-.
T Consensus 76 tAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNPv 121 (313)
T COG0039 76 TAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNPV 121 (313)
T ss_pred eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCcH
Confidence 87 2222 2333445555554 466777777643
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.12 Score=50.84 Aligned_cols=108 Identities=16% Similarity=0.195 Sum_probs=67.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCC-CcE-EEEeCChHHH-----HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKG-FPI-SVYNRTTSKV-----DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G-~~V-~v~dr~~~~~-----~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
++||+|+|+ |.||+.+.+.+.+.. +++ ..++|.+... .++...+ .+++.+.+++...... +|++|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~----~~gv~v~~~~~~~~~~---~DV~I 74 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG----LLGVPVTDDLLLVKAD---ADVLI 74 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc----ccCceeecchhhcccC---CCEEE
Confidence 579999998 999999999999875 554 4678876532 1221111 1235555665544444 99999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~ 124 (505)
=...+. .....++-. +..+..+|-+||+......+..+.+.++
T Consensus 75 DFT~P~-~~~~~l~~~---~~~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 75 DFTTPE-ATLENLEFA---LEHGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred ECCCch-hhHHHHHHH---HHcCCCeEEECCCCCHHHHHHHHHHHhh
Confidence 776553 444444433 3355666667788776666655555554
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.071 Score=53.28 Aligned_cols=109 Identities=13% Similarity=0.108 Sum_probs=72.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|+|+|-.+++++..|++.|. +|+++||++++.+.+.+... .... .++ . ...+|+||-++|.+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~------~~~~---~~~-~-~~~~dlvINaTp~Gm~ 191 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYG------YEWR---PDL-G-GIEADILVNVTPIGMA 191 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhC------Ccch---hhc-c-cccCCEEEECCccccC
Confidence 369999999999999999999997 59999999999988876421 1111 111 1 1238999999987632
Q ss_pred --HHH---HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 86 --VDQ---TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 --v~~---vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.+. -++ ...++++.+++|.--.. ..| .+.+..+++|...++
T Consensus 192 ~~~~~~~~pi~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 192 GGPEADKLAFP--EAEIDAASVVFDVVALP-AET-PLIRYARARGKTVIT 237 (272)
T ss_pred CCCccccCCCC--HHHcCCCCEEEEeecCC-ccC-HHHHHHHHCcCeEeC
Confidence 000 011 12367788999986544 333 455556677765543
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.14 Score=54.49 Aligned_cols=121 Identities=20% Similarity=0.153 Sum_probs=72.3
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH-HHH---HHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEEEEc-
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDE---TLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~-~~~---l~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIil~v- 80 (505)
+|.|||+|..|.++|+.|.+.|++|+++|..+.. ... +.+.. . ++... .+ .+.+. .+|+||.+-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~--~---gi~~~~g~~-~~~~~---~~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLN--E---GSVLHTGLH-LEDLN---NADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhc--c---CcEEEecCc-hHHhc---cCCEEEECCC
Confidence 5899999999999999999999999999976542 211 22110 0 13322 23 23333 389887754
Q ss_pred -CCCch-HHHHH---------HHHH-hcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 81 -KAGSP-VDQTI---------AALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 81 -p~~~~-v~~vl---------~~l~-~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
|.+.+ +...- .+++ ..+....|-|.+|++...++.-+...|...|..+.-.+-.|.+
T Consensus 72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~ 140 (433)
T TIGR01087 72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTP 140 (433)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHH
Confidence 33322 22211 1222 2233345667777887777777778888877665444444433
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.13 Score=53.96 Aligned_cols=100 Identities=14% Similarity=0.164 Sum_probs=60.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-----cEE--EE--eCChHHHHHHHHhhccc--CCC-Ceeee-CCHHHHHhhcCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGF-----PIS--VY--NRTTSKVDETLDRAHRE--GQL-PLTGH-YTPRDFVLSIQR 72 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~-----~V~--v~--dr~~~~~~~l~~~~~~~--g~~-~i~~~-~s~~e~v~~l~~ 72 (505)
-||+|||+ |.+|.++|..|+..|. +|. ++ |++.++++...-..... ..+ ++.+. .+.+++ ++
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~-kd--- 120 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVF-ED--- 120 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHh-CC---
Confidence 48999999 9999999999998774 234 44 88887765433211100 000 23433 344443 33
Q ss_pred CcEEEEEcCC----Cch-----------HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 73 PRSVIILVKA----GSP-----------VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 73 advIil~vp~----~~~-----------v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+|+||++.-. +.. ++++...|.++..++.+||-.||-.
T Consensus 121 aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPv 173 (387)
T TIGR01757 121 ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPC 173 (387)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcH
Confidence 9999997522 211 3344456666555777888887643
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.21 Score=49.19 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=71.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChHHHHHHHHhhcccCC--------C-CeeeeCCHHHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNR----------TTSKVDETLDRAHREGQ--------L-PLTGHYTPRDF 66 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~-v~dr----------~~~~~~~l~~~~~~~g~--------~-~i~~~~s~~e~ 66 (505)
.+|.|.|.|++|...|+.|.+.|.+|. +.|. +.+.+..+.+.....+. . +.+.. +.+++
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~~~~~ 117 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-EGKKP 117 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-CCcch
Confidence 589999999999999999999999988 5562 23334332211100000 0 01222 44444
Q ss_pred HhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
... .||+++-|--.+..-.+.+..|.. .+=++|+...|... |.+..+.|.++|+.++.
T Consensus 118 ~~~--~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~--t~~a~~~L~~rGI~vvP 175 (254)
T cd05313 118 WEV--PCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPC--TAEAIEVFRQAGVLFAP 175 (254)
T ss_pred hcC--CCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 432 489888776554333333344432 13468888888764 33677889999998874
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.049 Score=51.75 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=70.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|.+|..++++|+..|. +++++|.+.=....+....... ...+-.-+....+.++.+ .|++-+.+.+..
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~l-Np~v~i~~~~~~ 99 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRAL-NPRVKVSVDTDD 99 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHH-CCCCEEEEEecC
Confidence 3589999999999999999999997 5889987743222222110000 000000011122222222 267766665442
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
+.+...++ +..=++||+++. .+.....+.+.+.++++.|+.+.+.|
T Consensus 100 --~~~~~~~~---~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 100 --ISEKPEEF---FSQFDVVVATEL-SRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred --ccccHHHH---HhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 22212222 334478988754 34555556777888898888877655
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.31 Score=46.79 Aligned_cols=42 Identities=10% Similarity=0.240 Sum_probs=36.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~ 48 (505)
||+-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~ 43 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKE 43 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence 36888876 8999999999999999999999999887776543
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.041 Score=55.95 Aligned_cols=82 Identities=12% Similarity=0.217 Sum_probs=54.0
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+++|+|||+ |..|..|.+.|.++.+ ++.....+..+ .+ .+.++..+. +|++|+++|.
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--------------~~---~~~~~~~~~---~DvvFlalp~ 60 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--------------DA---AARRELLNA---ADVAILCLPD 60 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--------------cc---cCchhhhcC---CCEEEECCCH
Confidence 4579999995 9999999999998863 33322222111 01 122233344 8999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+ ...+.+.++. ..|..|||.|..+
T Consensus 61 ~-~s~~~~~~~~---~~g~~VIDlSadf 84 (313)
T PRK11863 61 D-AAREAVALID---NPATRVIDASTAH 84 (313)
T ss_pred H-HHHHHHHHHH---hCCCEEEECChhh
Confidence 7 4454555543 4688999998754
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.11 Score=52.24 Aligned_cols=104 Identities=14% Similarity=0.202 Sum_probs=76.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
..++.+|.++|.+.++.+..++|++.+.++. ++|.+++.++|+.+ ..+|.+++.....+.+. +. ++.
T Consensus 166 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------Gi~~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-d~-----~~~ 232 (296)
T PRK11559 166 GAGNVTKLANQVIVALNIAAMSEALVLATKA------GVNPDLVYQAIRGG-LAGSTVLDAKAPMVMDR-NF-----KPG 232 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcC-cccCHHHHhhchHhhcC-CC-----CCC
Confidence 4678899999999999999999999998753 39999999999976 55677666543322221 11 112
Q ss_pred HHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 010637 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTY 444 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~ 444 (505)
|. +.-....++-++..|-+.|+|+|.+.++...|+..
T Consensus 233 f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~ 269 (296)
T PRK11559 233 FR--IDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQAL 269 (296)
T ss_pred cc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 22 22334556888899999999999999999977653
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.088 Score=53.99 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=58.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCC-------CcEEEEeCChH--HHHHH----HHhh-cccCCCCeeeeCCHHHHHhhcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKG-------FPISVYNRTTS--KVDET----LDRA-HREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G-------~~V~v~dr~~~--~~~~l----~~~~-~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
.||+|+|+ |.+|..++..|+..+ .+|.++|+++. +.+.. .... ...+ ++....++.+.++.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~--~~~~~~~~~~~l~~-- 78 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLK--SVVATTDPEEAFKD-- 78 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccC--CceecCCHHHHhCC--
Confidence 47999999 999999999999854 58999999653 22211 1000 0000 22333454444444
Q ss_pred CCcEEEEEcCC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCC
Q 010637 72 RPRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 72 ~advIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+|+||++.-. +. .++++...+.++..++.++|-.||
T Consensus 79 -aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 79 -VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred -CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 9999988622 21 123334556666556777777776
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.051 Score=54.39 Aligned_cols=73 Identities=15% Similarity=0.254 Sum_probs=56.3
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~-MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||-+. +|.++|..|..+|..|++++... .++++.+.. +|+||.++.-...
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T---------------------~~l~~~~~~---ADIvv~AvG~p~~ 220 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT---------------------DDLKKYTLD---ADILVVATGVKHL 220 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC---------------------CCHHHHHhh---CCEEEEccCCccc
Confidence 5799999988 99999999999999999998421 245555565 9999998865433
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+. ...+++|.+|||.+..
T Consensus 221 i~------~~~vk~gavVIDvGin 238 (287)
T PRK14176 221 IK------ADMVKEGAVIFDVGIT 238 (287)
T ss_pred cC------HHHcCCCcEEEEeccc
Confidence 22 1257899999999875
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.046 Score=56.46 Aligned_cols=91 Identities=14% Similarity=0.244 Sum_probs=57.2
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCc---EEEE--eCChHHHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEE
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKGFP---ISVY--NRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVI 77 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G~~---V~v~--dr~~~~~~~l~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIi 77 (505)
..+||+|||+ |..|..|.+.|.+++|+ +... .|+..+.-.+ .+ . .+.... +.+++ +. +|+||
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~-~----~~~v~~~~~~~~-~~---~D~vf 74 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EG-R----DYTVEELTEDSF-DG---VDIAL 74 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cC-c----eeEEEeCCHHHH-cC---CCEEE
Confidence 3468999996 99999999999998884 3222 3333322111 11 1 122222 33333 44 99999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+++|.+ ........+. ..|..|||.|..+
T Consensus 75 ~a~p~~-~s~~~~~~~~---~~g~~VIDlS~~f 103 (344)
T PLN02383 75 FSAGGS-ISKKFGPIAV---DKGAVVVDNSSAF 103 (344)
T ss_pred ECCCcH-HHHHHHHHHH---hCCCEEEECCchh
Confidence 999997 4455544432 4689999998754
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.27 Score=52.60 Aligned_cols=115 Identities=14% Similarity=0.027 Sum_probs=69.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH--HHHHHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEEEEc-
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK--VDETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIil~v- 80 (505)
.++|.|+|.|..|.+.|+.|++.|++|+++|.++.. .+++.+.. . ++... ...++.... +|+||.+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~--~---gi~~~~g~~~~~~~~~---~d~vv~spg 76 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMF--D---GLVFYTGRLKDALDNG---FDILALSPG 76 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhcc--C---CcEEEeCCCCHHHHhC---CCEEEECCC
Confidence 357999999999999999999999999999976542 33333211 0 13221 212333333 89988864
Q ss_pred -CCC-chHHHHH---------HHHH-hcCC---CCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 81 -KAG-SPVDQTI---------AALS-EHMS---PGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 81 -p~~-~~v~~vl---------~~l~-~~l~---~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
|++ ..+.... -+++ ..+. ...|-|.+|++...++.-+...|...|...
T Consensus 77 i~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~ 139 (445)
T PRK04308 77 ISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDT 139 (445)
T ss_pred CCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCe
Confidence 322 2222221 1222 2221 235667777777777776777888777653
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.22 Score=52.39 Aligned_cols=112 Identities=12% Similarity=0.148 Sum_probs=69.3
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcCCCch
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~~ 85 (505)
.|-|+|.|.+|..++..|.+.|++|.+.+.+. .++..+.+.. -+.+..+-++..+ .+++|+.|+++.+++..
T Consensus 242 HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~----vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~ 315 (393)
T PRK10537 242 HFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDAD----LIPGDSSDSAVLKKAGAARARAILALRDNDAD 315 (393)
T ss_pred eEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhhhccCCCc----EEEeCCCCHHHHHhcCcccCCEEEEcCCChHH
Confidence 48899999999999999999999999998763 2333322211 1333334444443 45679999988887644
Q ss_pred HHHHHHHHHhcCCC-CcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 86 VDQTIAALSEHMSP-GDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 86 v~~vl~~l~~~l~~-g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
...++.... .+.+ ..+|+-..+. +..+.+++.|...+=.|
T Consensus 316 Nl~ivL~ar-~l~p~~kIIa~v~~~------~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 316 NAFVVLAAK-EMSSDVKTVAAVNDS------KNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHHHHHHH-HhCCCCcEEEEECCH------HHHHHHHhcCCCEEECH
Confidence 333333333 3434 4666655442 33455566788765554
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.19 Score=53.84 Aligned_cols=108 Identities=14% Similarity=0.144 Sum_probs=67.6
Q ss_pred cEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChHH-HHHHHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEEEEc--C
Q 010637 8 RIGLAGLAVMGQN-LALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIILV--K 81 (505)
Q Consensus 8 ~IgIIGlG~MG~~-lA~~La~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIil~v--p 81 (505)
+|-|||.|..|.+ +|+.|.+.|++|+++|.+... .+.+.+.+ +... .+. +.++ .+|+||.+- |
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~g-------i~~~~g~~~-~~~~---~~d~vV~spgi~ 69 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALG-------IPIYIGHSA-ENLD---DADVVVVSAAIK 69 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCc-------CEEeCCCCH-HHCC---CCCEEEECCCCC
Confidence 4789999999998 999999999999999976542 23343322 3332 232 2233 389888753 3
Q ss_pred CCc-hHHHHH---------HHHH-hcC-CCCcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 82 AGS-PVDQTI---------AALS-EHM-SPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 82 ~~~-~v~~vl---------~~l~-~~l-~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
.+. .+.... -+++ ..+ .+..|-|.+|++...++.-+...++..|.
T Consensus 70 ~~~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 70 DDNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred CCCHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 322 222221 1222 222 23357777888887777777788888775
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.061 Score=52.72 Aligned_cols=124 Identities=14% Similarity=0.158 Sum_probs=71.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|+|+|.+|..+|.+|++.|. +++++|.+.-....+..+.... ...+-.-+....+.+..+ .+++-+..++..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~i-np~v~i~~~~~~ 102 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQI-NPHIAINPINAK 102 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHH-CCCcEEEEEecc
Confidence 3579999999999999999999996 6888888864433333211000 000000011112222221 266666666543
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-. .. .+...+..-|+|||++-.. .....+.+.+.+.++-|+.+.+.|
T Consensus 103 i~-~~---~~~~~~~~~DlVvd~~D~~-~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 103 LD-DA---ELAALIAEHDIVVDCTDNV-EVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred CC-HH---HHHHHhhcCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 11 2223345668999987653 444445667778888888765554
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.095 Score=46.96 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=50.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|+|- ...|.+++..|.+.|..|++++++. .++++.++. +|+|+.++.....
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------------------~~l~~~v~~---ADIVvsAtg~~~~ 84 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------------------IQLQSKVHD---ADVVVVGSPKPEK 84 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCCCCc
Confidence 35667764 5667777777777777776666432 155666666 9999999987632
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
++ ...+++|.+|+|.+...
T Consensus 85 i~------~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 85 VP------TEWIKPGATVINCSPTK 103 (140)
T ss_pred cC------HHHcCCCCEEEEcCCCc
Confidence 22 23478999999988765
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.18 Score=48.96 Aligned_cols=124 Identities=13% Similarity=0.130 Sum_probs=69.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|.+|..+|.+|+..|. +++++|.+.=....+..+... ....+-.-+....+-+..+ .+++-+..++..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~i~~~~~~ 99 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAI-NPDVEIEAYNER 99 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHh-CCCCEEEEecce
Confidence 3589999999999999999999997 788888775332222211000 0000000011122222222 155555555543
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-. .+ .+.+.+..-++||++.-. +..-..+.+.+.+.++.|+.+++.|
T Consensus 100 i~-~~---~~~~~~~~~DvVi~~~d~-~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 100 LD-AE---NAEELIAGYDLVLDCTDN-FATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred eC-HH---HHHHHHhCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 11 222234456899988664 4444446667777888888877655
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.052 Score=51.09 Aligned_cols=91 Identities=18% Similarity=0.086 Sum_probs=60.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCC----HHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYT----PRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s----~~e~v~~l~~advIil~vp 81 (505)
++|.|||- ..+|.+||..|.++|..|+++|.+.-.. +........ .-+...+ +.+.+.+ +|+||.+++
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~h--s~t~~~~~~~~l~~~~~~---ADIVIsAvG 135 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIRH--EKHHVTDEEAMTLDCLSQ---SDVVITGVP 135 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--ccccccccc--ccccccchhhHHHHHhhh---CCEEEEccC
Confidence 57999996 6789999999999999999998664322 111000000 0010012 4455555 999999998
Q ss_pred CCch-HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 82 AGSP-VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~-v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.... +. ...+++|.+|||.+...
T Consensus 136 ~~~~~i~------~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 136 SPNYKVP------TELLKDGAICINFASIK 159 (197)
T ss_pred CCCCccC------HHHcCCCcEEEEcCCCc
Confidence 8643 22 13477999999998764
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.074 Score=55.13 Aligned_cols=97 Identities=9% Similarity=0.170 Sum_probs=59.7
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHh-hcc------cC-CCCeee-eCCHHHHHhhcCCCc
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDR-AHR------EG-QLPLTG-HYTPRDFVLSIQRPR 74 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~-~~~------~g-~~~i~~-~~s~~e~v~~l~~ad 74 (505)
++||+|+| .|.+|..+.+.|.++.. ++..+.++++...+.... ... .+ ...+.+ ..+++++ .. +|
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~---~D 78 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-DD---VD 78 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-cC---CC
Confidence 47999998 79999999999998754 788775665443221110 000 00 001122 2244443 43 99
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+|+.++|.+ ....+++.+. ..|..+||.|...
T Consensus 79 vVf~a~p~~-~s~~~~~~~~---~~G~~vIDls~~f 110 (349)
T PRK08664 79 IVFSALPSD-VAGEVEEEFA---KAGKPVFSNASAH 110 (349)
T ss_pred EEEEeCChh-HHHHHHHHHH---HCCCEEEECCchh
Confidence 999999996 3444444443 3678899998754
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.11 Score=49.76 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=54.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--EcCCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAG 83 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~ 83 (505)
++|-|.|. |.+|..++..|+++|++|.+.+|++++.+.+...... . . +++.++ =+.+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~--------------~--~---~~~~~~~~D~~~~ 66 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRA--------------A--G---GEARVLVFDVSDE 66 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHh--------------c--C---CceEEEEccCCCH
Confidence 57889985 9999999999999999999999998876554432110 0 0 222222 22333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..++++++++...+.+=+.||++...
T Consensus 67 ~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (246)
T PRK05653 67 AAVRALIEAAVEAFGALDILVNNAGI 92 (246)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 34566666665544445677776543
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.044 Score=56.21 Aligned_cols=35 Identities=14% Similarity=0.336 Sum_probs=31.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~ 40 (505)
..+|-|||+|.||...+++|.++|. +|++.||+..
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 3579999999999999999999995 6999999975
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.064 Score=53.54 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=56.9
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG-~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||-+ .+|.++|..|.++|..|+++.... .++++.+.. +|+||.++.-..-
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T---------------------~~l~~~~~~---ADIvV~AvGkp~~ 213 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFT---------------------KDLKAHTKK---ADIVIVGVGKPNL 213 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCcccc
Confidence 479999987 999999999999999999885321 245556666 9999999976543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 214 IT------EDMVKEGAIVIDIGINR 232 (281)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 22 13478999999998764
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.081 Score=53.03 Aligned_cols=125 Identities=19% Similarity=0.189 Sum_probs=70.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|-+|..++.+|+..|. ++.++|.+.=....+..+... ....+-.-+...++.+..+. +++=|.+.+..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iN-P~v~V~~~~~~ 105 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDIN-PELEIRAFPEG 105 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 3589999999999999999999996 688888775433333222100 00000011112222333221 44445555432
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCc-hhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWY-LNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~-~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-. .+-++++ +..-|+|||++.... .....+.+.+...++-++.+.+.|
T Consensus 106 l~-~~n~~~l---l~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 106 IG-KENADAF---LDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred cC-ccCHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 11 1122333 345589999876542 333445567778888888775554
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.079 Score=52.79 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=46.3
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCee-eeCCHHHHHhhc------CC-CcEEEE
Q 010637 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLT-GHYTPRDFVLSI------QR-PRSVII 78 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~-~~~s~~e~v~~l------~~-advIil 78 (505)
+|.|+|. |.+|+.++..|.+.|++|.+..|++++... .+.. .+. -..+++.+...+ +. +|.|++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~---~~~~----~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~ 73 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG---PNEK----HVKFDWLDEDTWDNPFSSDDGMEPEISAVYL 73 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC---CCCc----cccccCCCHHHHHHHHhcccCcCCceeEEEE
Confidence 4788986 999999999999999999999999875421 1100 011 123444443333 45 799988
Q ss_pred EcCC
Q 010637 79 LVKA 82 (505)
Q Consensus 79 ~vp~ 82 (505)
+.|.
T Consensus 74 ~~~~ 77 (285)
T TIGR03649 74 VAPP 77 (285)
T ss_pred eCCC
Confidence 8765
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.14 Score=56.13 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=71.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.++-|+|.|-+|++++..|++.|.+|.++||+.++.+.+.+.... ......+..+... ..+|+|+-++|.+..-
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~----~~~~~~~~~~~~~--~~~diiINtT~vGm~~ 453 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGG----QALTLADLENFHP--EEGMILANTTSVGMQP 453 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC----ceeeHhHhhhhcc--ccCeEEEecccCCCCC
Confidence 468899999999999999999999999999999998888764311 1222222222111 1267888777766321
Q ss_pred --HH-HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 87 --DQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 --~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
+. -+. ...+++..+++|..-... .| .+.+..+++|...+
T Consensus 454 ~~~~~pl~--~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~ 495 (529)
T PLN02520 454 NVDETPIS--KHALKHYSLVFDAVYTPK-IT-RLLREAEESGAIIV 495 (529)
T ss_pred CCCCCccc--HhhCCCCCEEEEeccCCC-cC-HHHHHHHHCCCeEe
Confidence 10 011 123667789999866543 33 44455566665443
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.1 Score=51.69 Aligned_cols=89 Identities=15% Similarity=0.211 Sum_probs=58.8
Q ss_pred cCCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 3 ASALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 3 ~~~~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+.+++++-|-|+ +-+|..+|+.|+++||+|.+..|+.++++++.++.... .. ++ ++++-+=+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~--------~~----v~----v~vi~~DLs 66 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK--------TG----VE----VEVIPADLS 66 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh--------hC----ce----EEEEECcCC
Confidence 334456777786 99999999999999999999999999999988754321 00 01 233333334
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~s 107 (505)
+...+..+.+++.....+=+++|++.
T Consensus 67 ~~~~~~~l~~~l~~~~~~IdvLVNNA 92 (265)
T COG0300 67 DPEALERLEDELKERGGPIDVLVNNA 92 (265)
T ss_pred ChhHHHHHHHHHHhcCCcccEEEECC
Confidence 44556666666665433346666643
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.13 Score=50.17 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=54.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EEcCCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAG 83 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp~~ 83 (505)
++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.+.... . . .++.+ .=+.+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~--------------~--~---~~~~~~~~D~~~~ 71 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKG--------------Q--G---LSAHALAFDVTDH 71 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------c--C---ceEEEEEccCCCH
Confidence 46888875 9999999999999999999999998776554432110 0 0 12222 223333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..++.+++++...+.+=++||++...
T Consensus 72 ~~~~~~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 72 DAVRAAIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 45666666665555555677776543
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.12 Score=49.50 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=35.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
++|-|+|. |.+|..++..|+++|++|.+.+|++++.+++.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAA 48 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHH
Confidence 46888875 999999999999999999999999887666544
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.096 Score=53.54 Aligned_cols=187 Identities=11% Similarity=0.063 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChHHHHHHH----Hhhcc---cCC----------CCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 17 MGQNLALNVAEKGFPISVYNRTTSKVDETL----DRAHR---EGQ----------LPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 17 MG~~lA~~La~~G~~V~v~dr~~~~~~~l~----~~~~~---~g~----------~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
||.+||..+..+|++|...|.+..-++.-. ..... .+. .+.....+..++ +.+|.++.+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~----~~~dmviea 76 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGF----ANADMVIEA 76 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccc----cccceeccc
Confidence 899999999999999999999965443211 11000 000 022333333343 348999888
Q ss_pred cCCCchHH-HHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC--CCeEEeCCCCCCHHHhhcCC-ccccCCCHHHH
Q 010637 80 VKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAY 155 (505)
Q Consensus 80 vp~~~~v~-~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~ 155 (505)
|-.+-.++ +++.+|....++..++-..+|+.+.+...-.-...++ |.||.... .-.+--. ..-..++..+.
T Consensus 77 v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa-----~~m~LlEii~~~~tS~~~i 151 (380)
T KOG1683|consen 77 VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPA-----HWMQLLEIILALYTSKLTI 151 (380)
T ss_pred hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHH-----HHHHHHHHHHhcCCCchHH
Confidence 87776554 4446776666666656555555543332211111221 44443211 0000000 00012222222
Q ss_pred HHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 010637 156 NNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEW 227 (505)
Q Consensus 156 ~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~ 227 (505)
..+-..=..++ +-++.+|. ..|.++-.+ .-....++..++...| .++.+++.+...+
T Consensus 152 A~Ain~~~~~g------k~~vvVg~-c~gf~v~r~-------l~~y~~~~~~~l~e~g-~~p~~iD~~~t~f 208 (380)
T KOG1683|consen 152 ATAINGGSPAG------KLPVVVGN-CCGFRVNRL-------LPPYTIGLNELLLEIG-ADPWLIDSLITKF 208 (380)
T ss_pred HHHHhcccccC------CccEEecc-CCceEEEec-------ccHHHHHHHHHHHHcC-CCHHHHHHHHHhc
Confidence 22222212222 43444554 444444322 1223467778888888 9999999987543
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.14 Score=50.73 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=54.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.+... .. ...+..-+.+...
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~-----------------~~---~~~~~~D~~d~~~ 64 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHP-----------------DR---ALARLLDVTDFDA 64 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcC-----------------CC---eeEEEccCCCHHH
Confidence 46888875 999999999999999999999999887665543210 00 1222223344445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+...++++...+.+=++||++...
T Consensus 65 ~~~~~~~~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 65 IDAVVADAEATFGPIDVLVNNAGY 88 (277)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCc
Confidence 566666655544444677776543
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.28 Score=52.63 Aligned_cols=116 Identities=17% Similarity=0.080 Sum_probs=65.1
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH-HH----HHHHhhcccCCCCeeeeCCHH--HHHhhcCCCcEEEEEc
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VD----ETLDRAHREGQLPLTGHYTPR--DFVLSIQRPRSVIILV 80 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~-~~----~l~~~~~~~g~~~i~~~~s~~--e~v~~l~~advIil~v 80 (505)
||.|||+|..|.+.|+.|++.|++|.++|+.+.. .. .+.+.+. .+..-.... .+-..+..+|.||.+-
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi-----~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGI-----TVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCC-----EEEECCccchhhhhHHhhcCCEEEECC
Confidence 6899999999999999999999999999976532 22 2333221 121111111 1111223489888743
Q ss_pred --CCCc-hHHHHHH---------HH-HhcCCC-CcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 81 --KAGS-PVDQTIA---------AL-SEHMSP-GDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 81 --p~~~-~v~~vl~---------~l-~~~l~~-g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
|.+. .+....+ ++ ...+.+ ..|-|-+|++...++.-+...+...|...
T Consensus 77 gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~ 138 (459)
T PRK02705 77 GIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAGLNA 138 (459)
T ss_pred CCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCCe
Confidence 2221 1211111 11 122222 34666677777666666677777766543
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.22 Score=57.45 Aligned_cols=111 Identities=10% Similarity=0.053 Sum_probs=68.2
Q ss_pred CCcEEEEcccHHHHHH-HHHHHhCCCcEEEEeCChH-HHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEE--c
Q 010637 6 LSRIGLAGLAVMGQNL-ALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIIL--V 80 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~l-A~~La~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~--v 80 (505)
+.+|.|||+|..|.+. |+.|.+.|++|+++|.++. ..+.+.+.+ +... ....+.+. .+|+||.+ +
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~g-------i~~~~g~~~~~~~---~~d~vV~SpgI 73 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKG-------ARFFLGHQEEHVP---EDAVVVYSSSI 73 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHcC---CCCEEEECCCc
Confidence 3469999999999987 9999999999999997643 334444332 3332 12223333 38988865 2
Q ss_pred CCCc-hHHHHH---------HHHHhcCCC--CcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 81 KAGS-PVDQTI---------AALSEHMSP--GDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 81 p~~~-~v~~vl---------~~l~~~l~~--g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
|.+. .+.... -+++..+.+ ..|-|.+||+...++.-+...|...|.
T Consensus 74 ~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 74 SKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 3322 222221 122222222 357777888887777777778887664
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.17 Score=53.04 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=68.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|-.|..++.+|+..|. ++.++|++.-....+..+... ....+..-+....+.+..+ .+++-+...+..
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~~~~~~ 213 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAAL-NPDVQVEAVQER 213 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3579999999999999999999997 799999884322222211000 0000000011112222211 145545554432
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-. ...+..+ +..-++|||++-... .-..+.+.+.+.++.|+.+.+.|
T Consensus 214 ~~-~~~~~~~---~~~~D~Vv~~~d~~~-~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 214 VT-SDNVEAL---LQDVDVVVDGADNFP-TRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred CC-hHHHHHH---HhCCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEEEecc
Confidence 11 1222333 345689999877642 32335566778888888876654
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.12 Score=50.84 Aligned_cols=124 Identities=13% Similarity=0.146 Sum_probs=69.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|..|..++.+|+..|. +++++|.+.=....+..+... ....+-.-+....+.+..+ .+++-+.+.+..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~l-np~v~i~~~~~~ 110 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARI-NPHIAIETINAR 110 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3589999999999999999999996 788998775433333221100 0000000111222222221 256666666543
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-. ..-+. ..++.-++|||++-.. ..-..+.+.+.+.++-|+.+.+.|
T Consensus 111 i~-~~~~~---~~~~~~DiVi~~~D~~-~~r~~ln~~~~~~~ip~v~~~~~g 157 (245)
T PRK05690 111 LD-DDELA---ALIAGHDLVLDCTDNV-ATRNQLNRACFAAKKPLVSGAAIR 157 (245)
T ss_pred CC-HHHHH---HHHhcCCEEEecCCCH-HHHHHHHHHHHHhCCEEEEeeecc
Confidence 11 11222 2344568999987643 333335566677788888765543
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.15 Score=50.65 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=35.3
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHH
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~ 46 (505)
+++|-|.|. |.+|..+|+.|++.|++|.+.+|++++.+.+.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~ 45 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE 45 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 346778886 99999999999999999999999988776554
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.14 Score=52.54 Aligned_cols=40 Identities=13% Similarity=0.382 Sum_probs=33.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChHHHHHH
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDET 45 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~-G~~V~v~dr~~~~~~~l 45 (505)
||+|-|.|. |.+|+.++..|+++ ||+|.+.+|+.++...+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence 368999996 99999999999986 79999999987655444
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.097 Score=51.23 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=35.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHH
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~ 46 (505)
+++|.|+|. |.+|..++..|+++||+|++..|++++.....
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~ 58 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL 58 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc
Confidence 468999995 99999999999999999999999988765443
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.15 Score=51.69 Aligned_cols=94 Identities=14% Similarity=0.157 Sum_probs=58.0
Q ss_pred EEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhccc---CCCCeeee-CCHHHHHhhcCCCcEEEEEcCC--
Q 010637 11 LAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE---GQLPLTGH-YTPRDFVLSIQRPRSVIILVKA-- 82 (505)
Q Consensus 11 IIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~---g~~~i~~~-~s~~e~v~~l~~advIil~vp~-- 82 (505)
|||+|.+|..+|..|+..+. ++.++|++.++++.......+. -..+.++. .+.+++ ++ +|+||++.-.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~-~d---aDivVitag~~r 76 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDC-KD---ADLVVITAGAPQ 76 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHH-CC---CCEEEECCCCCC
Confidence 69999999999999998876 6999999887654433211100 00022333 344443 33 9999997632
Q ss_pred --Cc-----------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 83 --GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 --~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+. .++++.+.+..+ .+..+||..||-
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 115 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNP 115 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 11 133444556554 466777777764
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.23 Score=47.49 Aligned_cols=84 Identities=13% Similarity=0.174 Sum_probs=55.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++..+..+.... .. ..++..-+.+...
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~D~~~~~~ 68 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA----------------DA---LRIGGIDLVDPQA 68 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh----------------cC---ceEEEeecCCHHH
Confidence 46888875 9999999999999999999999998765544322100 01 2334444444455
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++++.....+-+.|+++...
T Consensus 69 ~~~~~~~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 69 ARRAVDEVNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHHHHHHHHhCCcCEEEECCcc
Confidence 666666666555455677776543
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.13 Score=50.18 Aligned_cols=84 Identities=14% Similarity=0.285 Sum_probs=55.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EEcCCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAG 83 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp~~ 83 (505)
++|-|.|. |.+|..++..|+++|++|.+.+|++++.+++.+..... . +++.+ .-+.+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dl~~~ 68 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA----------------G---GKAIGVAMDVTNE 68 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc----------------C---ceEEEEECCCCCH
Confidence 45777776 99999999999999999999999998776655432100 0 22222 222333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..++++++++.....+-+.||++...
T Consensus 69 ~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 69 DAVNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 45566666665555556788887654
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.15 Score=52.34 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=29.5
Q ss_pred EEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHH
Q 010637 9 IGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLD 47 (505)
Q Consensus 9 IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~ 47 (505)
|||+|+|.+|+..++.+.+. +.+|. +.|.+++....+..
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~ 41 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAK 41 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHH
Confidence 69999999999999998754 56655 56777776555544
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.09 Score=54.32 Aligned_cols=97 Identities=11% Similarity=0.088 Sum_probs=56.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCC-CcEEEE-eCChHHHHHHHHhhcc-----cCC--CCeeeeCCHHHHHhhcCCCcEE
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKG-FPISVY-NRTTSKVDETLDRAHR-----EGQ--LPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G-~~V~v~-dr~~~~~~~l~~~~~~-----~g~--~~i~~~~s~~e~v~~l~~advI 76 (505)
+||+|+|+ |.||..+++.|.++. ++|... +++...-+.+.+.... ... ..+.......+... .+|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASK---DVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhc---cCCEE
Confidence 48999995 999999999999877 577655 5543321222111100 000 01111111112223 49999
Q ss_pred EEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
++++|.+ ....+...+. ..|..+||.|..+
T Consensus 78 f~a~p~~-~s~~~~~~~~---~~G~~VIDlsg~f 107 (341)
T TIGR00978 78 FSALPSE-VAEEVEPKLA---EAGKPVFSNASNH 107 (341)
T ss_pred EEeCCHH-HHHHHHHHHH---HCCCEEEECChhh
Confidence 9999997 3344444332 4688899988764
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.19 Score=49.30 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=36.7
Q ss_pred CCcCCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 1 MEASALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 1 m~~~~~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
|.+...+++-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.+
T Consensus 1 m~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (261)
T PRK08265 1 MIGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAA 48 (261)
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 43322345777775 999999999999999999999999877666554
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.15 Score=49.34 Aligned_cols=87 Identities=13% Similarity=0.086 Sum_probs=56.1
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|-|.|. |.+|..+++.|+++|++|.+.+|+++..+.+.+..... -.. ...+..-+.+..
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~ 68 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--------------GGT---AIAVQVDVSDPD 68 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEcCCCCHH
Confidence 356888886 99999999999999999999999987665544321100 000 112222234444
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++.+.....+=++||++...
T Consensus 69 ~~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 69 SAKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 5666666666555555788887664
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.22 Score=52.98 Aligned_cols=117 Identities=13% Similarity=0.107 Sum_probs=74.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEE--------Ee---CChHHHHHHHHhhcccCC--------C-CeeeeCCHHHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISV--------YN---RTTSKVDETLDRAHREGQ--------L-PLTGHYTPRDF 66 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v--------~d---r~~~~~~~l~~~~~~~g~--------~-~i~~~~s~~e~ 66 (505)
.+|+|-|+|++|...|+.|.+.|..|.. || .+.++++.+.+.....+. + +.+.. +.+++
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~~~ 307 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGKKP 307 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCccc
Confidence 5799999999999999999999999988 88 777764433322111100 0 11111 23333
Q ss_pred HhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
... .||+.+-|--.+....+.++.|... +=++|+...|. | .|.+..+.|.++|+.|+.
T Consensus 308 ~~~--~cDVliPcAl~n~I~~~na~~l~~~--~ak~V~EgAN~-p-~t~eA~~iL~~rGI~~vP 365 (445)
T PRK14030 308 WEQ--KVDIALPCATQNELNGEDADKLIKN--GVLCVAEVSNM-G-CTAEAIDKFIAAKQLFAP 365 (445)
T ss_pred eec--cccEEeeccccccCCHHHHHHHHHc--CCeEEEeCCCC-C-CCHHHHHHHHHCCCEEeC
Confidence 331 4888887765543333333444321 34789999998 4 555677888999998874
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.048 Score=56.26 Aligned_cols=90 Identities=14% Similarity=0.214 Sum_probs=56.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEE---EEeCChHHHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEEcCC
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPIS---VYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~---v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~vp~ 82 (505)
+|+||| .|..|..|.+.|.+++|++. ++.++...-+.+.-.+. .+... .+.+++ . .+|++|+|+|.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~-----~~~~~~~~~~~~-~---~~D~v~~a~g~ 71 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGK-----ELEVNEAKIESF-E---GIDIALFSAGG 71 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCe-----eEEEEeCChHHh-c---CCCEEEECCCH
Confidence 689999 59999999999999988743 44444332222211111 12222 133333 3 38999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+ ...+....+ +..|..|||.|+.+
T Consensus 72 ~-~s~~~a~~~---~~~G~~VID~ss~~ 95 (339)
T TIGR01296 72 S-VSKEFAPKA---AKCGAIVIDNTSAF 95 (339)
T ss_pred H-HHHHHHHHH---HHCCCEEEECCHHH
Confidence 7 445454444 34678999998743
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.19 Score=48.93 Aligned_cols=82 Identities=13% Similarity=0.214 Sum_probs=53.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+|-|+|. |.+|..++..|++.|++|.+.+|++++.+.+..... .. ...+-.=+.+...
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dl~~~~~ 60 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG-----------------DN---LYIAQLDVRNRAA 60 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----------------cc---eEEEEecCCCHHH
Confidence 46888885 999999999999999999999999887665543210 00 1222222334445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (505)
++.+++.+.....+=+++|.+..
T Consensus 61 i~~~~~~~~~~~~~id~vi~~ag 83 (248)
T PRK10538 61 IEEMLASLPAEWRNIDVLVNNAG 83 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 56666666554444567776554
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.46 Score=50.70 Aligned_cols=114 Identities=12% Similarity=0.066 Sum_probs=67.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH--HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc--C
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK--VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--K 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p 81 (505)
.++|.|+|+|..|.+.+..|++.|++|+++|..+.. .+.+ +.+. .+.......+.++. .|+||..- |
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l-~~g~-----~~~~~~~~~~~~~~---~d~vv~spgi~ 76 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKL-PENV-----ERHTGSLNDEWLLA---ADLIVASPGIA 76 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHH-hcCC-----EEEeCCCCHHHhcC---CCEEEECCCCC
Confidence 357999999999999999999999999999975432 2233 2121 12222222233333 78666543 2
Q ss_pred CC-chHHHHH---------HHHHhc-CCCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 82 AG-SPVDQTI---------AALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 82 ~~-~~v~~vl---------~~l~~~-l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
.+ ..+.... .++... .....|-|-+|++...++.-+...|...|..+
T Consensus 77 ~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~ 134 (438)
T PRK03806 77 LAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWKV 134 (438)
T ss_pred CCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCE
Confidence 22 1222221 123322 23334667778887777776777887776544
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.27 Score=51.09 Aligned_cols=124 Identities=14% Similarity=0.224 Sum_probs=69.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|-.|..++.+|+..|. ++.++|.+.=....+..+... ....+-.-+....+-+..+ .+++-+.+.+..
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~v~~~~~~ 106 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL-NPDVKVTVSVRR 106 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH-CCCcEEEEEEee
Confidence 3589999999999999999999997 788999885322222211000 0000000011112222221 267777766543
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-..+ .+...+..-|+|||++-.. ..-..+...+.+.++-|+.+.+.|
T Consensus 107 i~~~----~~~~~~~~~DvVvd~~d~~-~~r~~~n~~c~~~~ip~v~~~~~g 153 (355)
T PRK05597 107 LTWS----NALDELRDADVILDGSDNF-DTRHLASWAAARLGIPHVWASILG 153 (355)
T ss_pred cCHH----HHHHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEec
Confidence 2212 1222344568999997653 222334556677788888776554
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.039 Score=57.72 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=34.9
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|...+.++|.|||.|.-|..+|..|+++|++|+++++.+.
T Consensus 1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 1 MTHMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4443456899999999999999999999999999998864
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.034 Score=58.14 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=33.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
+.++|.|||.|..|..+|..|+++|++|.+++|++.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 346899999999999999999999999999999864
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.034 Score=58.65 Aligned_cols=33 Identities=27% Similarity=0.634 Sum_probs=31.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.+|.|||.|.+|.+.|..|++.|++|+++|+.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999885
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.7 Score=45.31 Aligned_cols=159 Identities=12% Similarity=0.112 Sum_probs=93.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCC---------------Ce---eeeCCHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQL---------------PL---TGHYTPRDF 66 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~---------------~i---~~~~s~~e~ 66 (505)
|.+|-|+|+|..+..+|..|.+.+. +|-+.+|...+-+.+.+.....+.. .+ ....+.+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i 80 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEI 80 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHh
Confidence 3579999999999999999998875 6999999888877776543321000 01 112344555
Q ss_pred HhhcCCCcEEEEEcCCCchHHHHHHHHHhc-CCCCcEEEecCCCCchhHHHHHHHHHHCC--CeEEe------C-CCCCC
Q 010637 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKG--LLYLG------M-GVSGG 136 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~-l~~g~iIId~st~~~~~t~~~~~~l~~~g--i~~i~------~-pvsGg 136 (505)
... =|.+|+|||++ +-.+|+++|-+. |..=+.||-.|... ....-+...+.+.| +.++. . -++.+
T Consensus 81 ~g~---WdtlILavtaD-AY~~VL~ql~~~~L~~vk~iVLvSPtf-GS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~ 155 (429)
T PF10100_consen 81 EGE---WDTLILAVTAD-AYLDVLQQLPWEVLKRVKSIVLVSPTF-GSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDG 155 (429)
T ss_pred ccc---ccEEEEEechH-HHHHHHHhcCHHHHhhCCEEEEECccc-chHHHHHHHHHhcCCCceEEEeecccccceeccC
Confidence 544 79999999997 667788766542 33334444444443 23333444455443 33322 1 23333
Q ss_pred HHHh---hcCC--ccccC---CCHHHHHHHHHHHHHHhccc
Q 010637 137 EEGA---RHGP--SLMPG---GSFEAYNNIRDILQKVAAQV 169 (505)
Q Consensus 137 ~~~a---~~G~--~im~g---g~~ea~~~v~~ll~~iga~~ 169 (505)
++.. ..|. .+..| ++.....++..+|+.++.+.
T Consensus 156 ~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~ 196 (429)
T PF10100_consen 156 EQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQL 196 (429)
T ss_pred CCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeE
Confidence 2111 1111 34444 24456778888998888553
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.18 Score=48.72 Aligned_cols=86 Identities=13% Similarity=0.128 Sum_probs=54.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|+|. |.+|..+|..|++.|++|.+.+|++++.+.+.+.... .-.. .+++..=+.+...
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~Dl~~~~~ 70 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEA--------------AGGR---AHAIAADLADPAS 70 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---EEEEEccCCCHHH
Confidence 56888885 9999999999999999999999998877665432110 0000 1222222333344
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++.+.....+-+.||++...
T Consensus 71 ~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 71 VQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 555566555544455777776554
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.11 Score=51.94 Aligned_cols=74 Identities=15% Similarity=0.254 Sum_probs=57.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++.... .++++...+ +|+||.++.....
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------------------~~l~~~~~~---ADIvIsAvGkp~~ 211 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------------------QDLPAVTRR---ADVLVVAVGRPHL 211 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEecCCcCc
Confidence 47999995 7899999999999999999886332 245566666 9999999977543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 212 i~------~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 212 IT------PEMVRPGAVVVDVGINR 230 (287)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 22 23478999999998764
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.1 Score=52.14 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=56.2
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG-~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||-+ ..|.++|..|...|..|+++.++.. ++++.+.. +|+||.+++-..-
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~---------------------~L~~~~~~---ADIvI~Avgk~~l 208 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE---------------------NLKAELRQ---ADILVSAAGKAGF 208 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChh---------------------HHHHHHhh---CCEEEECCCcccc
Confidence 579999998 9999999999999999999886532 34444555 9999999974322
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. .+ .+++|.+|||.+...
T Consensus 209 v~---~~---~vk~GavVIDVgi~~ 227 (279)
T PRK14178 209 IT---PD---MVKPGATVIDVGINQ 227 (279)
T ss_pred cC---HH---HcCCCcEEEEeeccc
Confidence 22 22 258999999998653
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.041 Score=57.60 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=35.1
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|++..+.+|.|||.|..|..+|..|+++|++|.++++.+.
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 5554556899999999999999999999999999998753
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.27 Score=53.05 Aligned_cols=116 Identities=12% Similarity=0.206 Sum_probs=75.4
Q ss_pred CcEEEEcc----------cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc--------c------cCC-CCeeeeC
Q 010637 7 SRIGLAGL----------AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH--------R------EGQ-LPLTGHY 61 (505)
Q Consensus 7 ~~IgIIGl----------G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~--------~------~g~-~~i~~~~ 61 (505)
.+|+|+|+ ..-...++..|.+.|.+|.+||.--+..+.-...+. . .+. .++..+.
T Consensus 325 ~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (473)
T PLN02353 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVW 404 (473)
T ss_pred CEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeC
Confidence 58999998 346788999999999999999976433211101000 0 000 0245667
Q ss_pred CHHHHHhhcCCCcEEEEEcCCCchHHHH-HHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 62 TPRDFVLSIQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~~v~~v-l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
++.+++++ +|+||+++... ..+.. ++.+.+.+.+..+|+|+-+.... +.+++.|+.|++.+
T Consensus 405 ~~~~a~~~---aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~~G 466 (473)
T PLN02353 405 DAYEATKG---AHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYSIG 466 (473)
T ss_pred CHHHHhcC---CCEEEECCCCh-HhcccCHHHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEEeC
Confidence 77777776 99999999885 44432 35555556555689999998743 22345588888754
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.06 Score=55.35 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=56.5
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCC---cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
..++|||||+ |..|.-|.+.|.++.| ++..+......-+.+.-.+. .+.+. +++++. +...|++|+++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~-----~~~v~-~~~~~~--~~~~Dvvf~a~ 74 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK-----SVTVQ-DAAEFD--WSQAQLAFFVA 74 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc-----ceEEE-eCchhh--ccCCCEEEECC
Confidence 3468999997 9999999999999655 44444322211111110010 12222 344332 12389999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
|.+ ...++...+. ..|..|||.|..+
T Consensus 75 p~~-~s~~~~~~~~---~~g~~VIDlS~~f 100 (336)
T PRK08040 75 GRE-ASAAYAEEAT---NAGCLVIDSSGLF 100 (336)
T ss_pred CHH-HHHHHHHHHH---HCCCEEEECChHh
Confidence 986 4444544443 4689999998754
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.13 Score=51.52 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=57.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++.... .++++.+.+ +|+||.++.....
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~T---------------------~~l~~~~~~---ADIvI~AvG~~~~ 213 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT---------------------KDLPQVAKE---ADILVVATGLAKF 213 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEecCCcCc
Confidence 57999996 6789999999999999999885321 245666666 9999999977643
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 214 VK------KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 22 13478999999998764
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.15 Score=52.33 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=55.9
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChHH--HHHHHHhhcc---cCCCCeeeeCCHHHHHhhcCCCc
Q 010637 8 RIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VDETLDRAHR---EGQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~G~-------~V~v~dr~~~~--~~~l~~~~~~---~g~~~i~~~~s~~e~v~~l~~ad 74 (505)
+|+|||+ |.+|..+|..|+..|. ++.++|+++.. .+.......+ .....+....+..+.++ .+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~---~aD 77 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT---DVD 77 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC---CCC
Confidence 6999999 9999999999998654 59999996542 2111100000 00001222223233333 399
Q ss_pred EEEEEcCC----Cch-----------HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 75 SVIILVKA----GSP-----------VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 75 vIil~vp~----~~~-----------v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+||++.-. +.. ++++...+.++-.++.+||-.||-
T Consensus 78 iVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNP 127 (324)
T TIGR01758 78 VAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNP 127 (324)
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 99987632 211 333345555554466777777753
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.13 Score=51.47 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=57.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|++++... .++++...+ +|+||.++.-...
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~~l~~~~~~---ADIvIsAvGk~~~ 215 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT---------------------QNLPSIVRQ---ADIIVGAVGKPEF 215 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEeCCCcCc
Confidence 47999996 7899999999999999999987331 245556666 9999999977543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 216 i~------~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 216 IK------ADWISEGAVLLDAGYNP 234 (284)
T ss_pred cC------HHHcCCCCEEEEecCcc
Confidence 22 23578999999998754
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.28 Score=48.07 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=54.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.|. |.+|..+|+.|+++|++|.+.+|++++.+.+.+... .. ...+..=+.+...
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 66 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG-----------------DH---VLVVEGDVTSYAD 66 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---ceEEEccCCCHHH
Confidence 35666765 889999999999999999999999887766554211 00 1222222333345
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 67 NQRAVDQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665555455777776653
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.12 Score=51.52 Aligned_cols=74 Identities=14% Similarity=0.261 Sum_probs=57.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|++++... .++.+.+.+ +|+||.++.-...
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T---------------------~~l~~~~~~---ADIvIsAvGkp~~ 214 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT---------------------KNLKEVCKK---ADILVVAIGRPKF 214 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEcCCCcCc
Confidence 47999996 7899999999999999999997431 255666666 9999999977643
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (278)
T PRK14172 215 ID------EEYVKEGAIVIDVGTSS 233 (278)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 22 13478999999997654
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.12 Score=51.94 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=57.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++... +.++++.+.+ ||+||.++.-...
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------------------TQDLASITRE---ADILVAAAGRPNL 214 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 57999995 789999999999999999998532 1255666666 9999999976543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 215 IG------AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 22 13578999999998764
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.42 Score=51.35 Aligned_cols=122 Identities=17% Similarity=0.137 Sum_probs=69.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc--CC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KA 82 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p~ 82 (505)
...+|+|+|+|.-|.+.++.|. .|.+|+++|.++.....+.+... . ......+ .+.... +|+||..- |.
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~-~---~~~~~~~-~~~~~~---~d~vV~SPgI~~ 75 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANRDIFEELYS-K---NAIAALS-DSRWQN---LDKIVLSPGIPL 75 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHh-CCCEEEEECCCCCchHHHHhhhc-C---ceeccCC-hhHhhC---CCEEEECCCCCC
Confidence 3458999999999999999999 59999999965443322221100 0 1211112 233333 88887753 33
Q ss_pred Cch-HHHHH---------HHHH-hcCCC-CcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 83 GSP-VDQTI---------AALS-EHMSP-GDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 83 ~~~-v~~vl---------~~l~-~~l~~-g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
..+ +...- -+++ ....+ ..|-|.+|++...+|.-+...+...|..+.-++..|
T Consensus 76 ~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG 140 (454)
T PRK01368 76 THEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIG 140 (454)
T ss_pred CCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCC
Confidence 222 22111 1222 22222 346677777777777777778887776554444444
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.39 Score=44.79 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=34.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
|++-|+|..-||..++..|++.|++|.+.+|++++.+.+..
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~ 41 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKR 41 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 46888887668888999999999999999999887666543
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.18 Score=48.66 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=37.4
Q ss_pred CCcCCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 1 m~~~~~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
|.+.+.++|-|.| .|.+|..+++.|+++|++|.+.+|++++...+.+
T Consensus 1 ~~~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (251)
T PRK12826 1 TRDLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAE 48 (251)
T ss_pred CCCCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3343445788888 6999999999999999999999999876655443
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.29 Score=47.75 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=53.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..+|+.|+++|++|.+.+|+.++.+++.+.... . ...+..=+.+...
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~D~~~~~~ 66 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGP-----------------A---AIAVSLDVTRQDS 66 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCC-----------------c---eEEEEccCCCHHH
Confidence 45777774 9999999999999999999999998877665442100 0 1112222333345
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (505)
++.+++.+...+.+=+++|++..
T Consensus 67 ~~~~~~~~~~~~~~id~li~~ag 89 (257)
T PRK07067 67 IDRIVAAAVERFGGIDILFNNAA 89 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 56666666555555567777654
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.49 Score=50.35 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=50.9
Q ss_pred CcEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChHHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCcE
Q 010637 7 SRIGLAGLAVM-GQNLALNVAEK-----GFPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgIIGlG~M-G~~lA~~La~~-----G~~V~v~dr~~~~~~~l~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~adv 75 (505)
|||+|||.|.. ...+...|+.. +-+|.++|.++++.+.... .... .| .+++..+++.+++++. +|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g---ADf 77 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID---ADF 77 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CCE
Confidence 58999999873 33455556543 3589999999988654322 1111 01 1357888999998887 999
Q ss_pred EEEEcCCC
Q 010637 76 VIILVKAG 83 (505)
Q Consensus 76 Iil~vp~~ 83 (505)
||..+..+
T Consensus 78 Vi~~irvG 85 (425)
T cd05197 78 VINQFRVG 85 (425)
T ss_pred EEEeeecC
Confidence 99998655
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.24 Score=48.54 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=29.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-----------CcEEEEeCCh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-----------FPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-----------~~V~v~dr~~ 39 (505)
..+|.|||+|-.|+.++.+|++.| .+++++|.+.
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 458999999999999999999874 2889998765
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.78 Score=50.42 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=50.2
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc-----cCC---CCeee----eCCHHHHHhhcCCCc
Q 010637 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR-----EGQ---LPLTG----HYTPRDFVLSIQRPR 74 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~-----~g~---~~i~~----~~s~~e~v~~l~~ad 74 (505)
.|.|.|. |.+|..++..|++.|++|.+++|+.++.+.+.+.... .|. .++.. ..+.+++.+.+..+|
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiD 161 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNAS 161 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCC
Confidence 4777875 9999999999999999999999999887765432100 000 01111 234455555566799
Q ss_pred EEEEEcC
Q 010637 75 SVIILVK 81 (505)
Q Consensus 75 vIil~vp 81 (505)
+||.++.
T Consensus 162 iVVn~AG 168 (576)
T PLN03209 162 VVICCIG 168 (576)
T ss_pred EEEEccc
Confidence 9998864
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.25 Score=47.95 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=35.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~ 46 (505)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH
Confidence 46889998 99999999999999999999999988765543
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.16 Score=58.72 Aligned_cols=125 Identities=20% Similarity=0.214 Sum_probs=74.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|||+|-+|..++.+|+..|. ++++.|-+.=....+..+.. .....+-.-+...++.+..+ .+++=|.+.+.+
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~I-NP~v~I~~~~~~ 410 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSV-NPFLDIRSFPEG 410 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHH-CCCCeEEEEecC
Confidence 3589999999999999999999997 67788776533333322110 00000001111223333322 267777777664
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhH-HHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t-~~~~~~l~~~gi~~i~~pvsG 135 (505)
- ..+.++++ ++.=|+|||+......+. ..+.+.+.+.++-++.+++.|
T Consensus 411 I-~~en~~~f---l~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G 459 (989)
T PRK14852 411 V-AAETIDAF---LKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG 459 (989)
T ss_pred C-CHHHHHHH---hhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 2 23333444 345589999887654333 344556777889888877654
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.24 Score=48.11 Aligned_cols=86 Identities=13% Similarity=0.203 Sum_probs=56.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.| .|.+|..+++.|+++|++|.+.+|++++.+.+....... . .+...+..-+.+...
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~----------------~-~~~~~~~~Dl~~~~~ 67 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA----------------G-GKAIGVAMDVTDEEA 67 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc----------------C-CcEEEEEcCCCCHHH
Confidence 4688888 599999999999999999999999988776654432100 0 002223333344445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++.+.....+-++||++...
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 68 INAGIDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666666655555777776543
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.12 Score=52.35 Aligned_cols=81 Identities=11% Similarity=0.286 Sum_probs=53.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.||+|+|. |..|.-|.+.|+.+.+ |-+...+.++. + . ..+.+++.++ +|++|+++|++ .
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~-~el~~l~s~~~--~------------~-~~~~~~~~~~---~D~vFlalp~~-~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD-IELLSIAPDRR--K------------D-AAERAKLLNA---ADVAILCLPDD-A 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC-eEEEEEecccc--c------------C-cCCHhHhhcC---CCEEEECCCHH-H
Confidence 47999996 9999999999998853 33222222110 0 0 1244455555 89999999997 4
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
..+.+..+. ..|..|||.|+.+
T Consensus 62 s~~~~~~~~---~~g~~VIDlSadf 83 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTAY 83 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChHH
Confidence 454544443 4688999998754
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.19 Score=50.80 Aligned_cols=108 Identities=15% Similarity=0.034 Sum_probs=74.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc--
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~-- 84 (505)
.+|+|||--.=-..++..|.+.|++|.++.-+.+.. ... ++..+++.+++.+. +|+|+..+|...
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~-------g~~~~~~~~~~~~~---ad~ii~~~p~~~~~ 69 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFT-------GATKSSSLEEALSD---VDVIILPVPGTNDE 69 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccC-------CceeeccHHHHhcc---CCEEEECCccccCC
Confidence 479999988888999999999999999976553211 111 35677788887776 999999988521
Q ss_pred -hHHHH-------H-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 85 -PVDQT-------I-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 85 -~v~~v-------l-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
.++.. + .+++..++++.+++ .+...+.. .+.+.++|+..++.+
T Consensus 70 ~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~----~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 70 GNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYL----KELAKETNRKLVELF 121 (296)
T ss_pred ceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHH----HHHHHHCCCeEEEEe
Confidence 11211 1 35677788998665 45555442 245668899887643
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.14 Score=51.08 Aligned_cols=74 Identities=16% Similarity=0.299 Sum_probs=56.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++.... .++++...+ +|+||.++.-...
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~T---------------------~~l~~~~~~---ADIvI~AvG~p~~ 212 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT---------------------RNLKQLTKE---ADILVVAVGVPHF 212 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 47999995 7899999999999999999885321 245555665 9999999977643
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 213 i~~------~~vk~GavVIDvGin~ 231 (282)
T PRK14169 213 IGA------DAVKPGAVVIDVGISR 231 (282)
T ss_pred cCH------HHcCCCcEEEEeeccc
Confidence 321 2478999999998754
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.28 Score=50.39 Aligned_cols=83 Identities=12% Similarity=0.122 Sum_probs=55.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE--EEEcCCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV--IILVKAG 83 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advI--il~vp~~ 83 (505)
+.|-|.|. |-+|..+|..|++.|++|.+.+|++++.+++.++.... . +++. ..=+.+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~----------------g---~~~~~~~~Dv~d~ 68 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL----------------G---AEVLVVPTDVTDA 68 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEeeCCCH
Confidence 34667776 89999999999999999999999998877665432110 0 2232 2233444
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+.++.+++.+.....+=+++|++..
T Consensus 69 ~~v~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 69 DQVKALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 5666676666655444477887754
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.56 Score=49.83 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=49.5
Q ss_pred CcEEEEcccHHHH-HHHHHHHhC-----CCcEEEEeCC-hHHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCc
Q 010637 7 SRIGLAGLAVMGQ-NLALNVAEK-----GFPISVYNRT-TSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 7 ~~IgIIGlG~MG~-~lA~~La~~-----G~~V~v~dr~-~~~~~~l~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~ad 74 (505)
|||+|||.|..-. .+...|+.. +-+|.++|++ +++++.... .... .+ .+.+..+.+.++++.. +|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g---ad 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG---AD 77 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CC
Confidence 5899999998643 344555542 3579999999 787644221 1110 00 1257788899998887 99
Q ss_pred EEEEEcCCC
Q 010637 75 SVIILVKAG 83 (505)
Q Consensus 75 vIil~vp~~ 83 (505)
+||.++..+
T Consensus 78 fVi~~~~vg 86 (419)
T cd05296 78 FVFTQIRVG 86 (419)
T ss_pred EEEEEEeeC
Confidence 999998443
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.15 Score=51.01 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=56.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++.... .++++.... ||+||.++.-...
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 213 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLSLYTRQ---ADLIIVAAGCVNL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999996 7789999999999999999887432 245555665 9999999977643
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 214 i~~------~~vk~GavVIDvGin~ 232 (282)
T PRK14166 214 LRS------DMVKEGVIVVDVGINR 232 (282)
T ss_pred cCH------HHcCCCCEEEEecccc
Confidence 321 2478999999998654
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.28 Score=49.35 Aligned_cols=104 Identities=13% Similarity=0.173 Sum_probs=76.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
+.++.+|.++|.+.+..+.+++|++.+.++ +++|.+++.++.+.+ .-+|.+++.....+... +. ++.
T Consensus 163 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gid~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-~~-----~~~ 229 (291)
T TIGR01505 163 GDGQTCKVANQIIVALNIEAVSEALVFASK------AGVDPVRVRQALRGG-LAGSTVLEVKGERVIDR-TF-----KPG 229 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcC-cccCHHHHhhChhhhcC-CC-----CCC
Confidence 467789999999999999999999999874 349999999999876 45777776543332221 11 112
Q ss_pred HHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 010637 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTY 444 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~ 444 (505)
|.- .-....++.+...|-+.|+|.|...++..+|...
T Consensus 230 f~~--~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a 266 (291)
T TIGR01505 230 FRI--DLHQKDLNLALDSAKAVGANLPNTATVQELFNTL 266 (291)
T ss_pred cch--HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Confidence 222 2334567888899999999999999999877643
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.15 Score=51.07 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=56.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|++++... .++.+.... +|+||.++.-...
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------------------~dl~~~~k~---ADIvIsAvGkp~~ 214 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------------------TDLKSHTTK---ADILIVAVGKPNF 214 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------------------CCHHHHhhh---cCEEEEccCCcCc
Confidence 47999995 7899999999999999999986432 244555555 9999999987643
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~vk~gavVIDvGin~ 233 (282)
T PRK14180 215 ITA------DMVKEGAVVIDVGINH 233 (282)
T ss_pred CCH------HHcCCCcEEEEecccc
Confidence 221 3478999999998653
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.34 Score=47.20 Aligned_cols=84 Identities=13% Similarity=0.132 Sum_probs=53.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..++..|+++|++|.+.+|++++.+.+.+.... .. ...+-.-+.+...
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~D~~~~~~ 63 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGD----------------AR---FVPVACDLTDAAS 63 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC----------------Cc---eEEEEecCCCHHH
Confidence 35778876 8999999999999999999999998877665542100 00 2223333344344
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+...++++.....+=+.||++...
T Consensus 64 ~~~~~~~~~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 64 LAAALANAAAERGPVDVLVANAGA 87 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 555555555444444667766543
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.3 Score=47.86 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=34.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
+++-|.|. |.+|..+|+.|++.|++|.+.+|+.++.+++.+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEA 47 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 35666675 889999999999999999999999887766543
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.17 Score=56.98 Aligned_cols=125 Identities=15% Similarity=0.198 Sum_probs=71.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|+|+|-+|+.++.+|+..|. ++.++|.+.=....+..+... ....+-.-+...++.+..+ .+++-|.+.+..
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~i-nP~~~I~~~~~~ 121 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSI-NPFLEITPFPAG 121 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHh-CCCCeEEEEecC
Confidence 3589999999999999999999997 677888765333233221100 0000000011122222222 156666676654
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhH-HHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t-~~~~~~l~~~gi~~i~~pvsG 135 (505)
-. .+-++.+ ++.-++|||+......++ ..+.+.+..+++-++.+++.|
T Consensus 122 i~-~~n~~~~---l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 122 IN-ADNMDAF---LDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred CC-hHHHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 22 2222333 445689999987643333 345566777889888876554
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.15 Score=51.19 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=57.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|++++... .++++.+.+ ||+||.++.-...
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------------------~~l~~~~~~---ADIvVsAvGkp~~ 216 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------------------RDLADYCSK---ADILVAAVGIPNF 216 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 47999996 7899999999999999999987432 245566666 9999999977643
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 217 i~~------~~ik~gaiVIDVGin~ 235 (294)
T PRK14187 217 VKY------SWIKKGAIVIDVGINS 235 (294)
T ss_pred cCH------HHcCCCCEEEEecccc
Confidence 221 2477999999998654
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.16 Score=57.29 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=71.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|||+| +|+..|..|+..|. +++++|.+.=....+..........+..-+...++-+..+ .+++-|.+++..
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~i-np~i~v~~~~~~ 184 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAEL-DPYLPVEVFTDG 184 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3589999999 89999999999994 8899987753222222110000000000011222222222 267777777765
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg 136 (505)
-. .+.++++. ..-|+||||+-.. ..-..+.+.+.++++-+|.+...+|
T Consensus 185 i~-~~n~~~~l---~~~DlVvD~~D~~-~~R~~ln~~a~~~~iP~i~~~~~~g 232 (722)
T PRK07877 185 LT-EDNVDAFL---DGLDVVVEECDSL-DVKVLLREAARARRIPVLMATSDRG 232 (722)
T ss_pred CC-HHHHHHHh---cCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 32 33344443 3458999998864 2333345566777888777654444
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.35 Score=47.32 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=54.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+|-|.|. |.+|..+|+.|+++|++|.+.+|++++.++..++.... .. ...+..=+.+...
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---------------~~---~~~~~~Dv~d~~~ 62 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---------------GE---VYAVKADLSDKDD 62 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---------------CC---ceEEEcCCCCHHH
Confidence 46888875 88999999999999999999999988766654431100 00 1122222334445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (505)
++++++++...+.+=+++|++..
T Consensus 63 ~~~~~~~~~~~~g~id~li~naG 85 (259)
T PRK08340 63 LKNLVKEAWELLGGIDALVWNAG 85 (259)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66666666655555567776544
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.38 Score=46.22 Aligned_cols=84 Identities=8% Similarity=0.060 Sum_probs=55.5
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++-|.| .|.+|..++..|+++|+.|.+.+|++++.+.+..... .. ..++-.=+.+..
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~ 65 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELG-----------------ER---VKIFPANLSDRD 65 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC-----------------Cc---eEEEEccCCCHH
Confidence 35688887 5999999999999999999999999887666543210 00 222222233444
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++++.+.+.+=+.||++...
T Consensus 66 ~~~~~~~~~~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 66 EVKALGQKAEADLEGVDILVNNAGI 90 (245)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666666666655555778777654
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.33 Score=47.96 Aligned_cols=83 Identities=11% Similarity=0.116 Sum_probs=54.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.| .|.+|..++..|++.|++|.+..|+++..+.+.+... .. ..++-.-+.+...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 62 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG-----------------DR---LWVLQLDVTDSAA 62 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------------Cc---eEEEEccCCCHHH
Confidence 4677887 5999999999999999999999999887766544210 00 1222223334445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++++.+...+=++||+++..
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 63 VRAVVDRAFAALGRIDVVVSNAGY 86 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 566666555544444777776543
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.29 Score=49.21 Aligned_cols=106 Identities=16% Similarity=0.070 Sum_probs=74.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCC-CCCc---
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNL-ASLV--- 401 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~-~~ll--- 401 (505)
+.++.+|+++|.+.++.+..++|++.+.++. ++|...+.++.+.+. -+|+.++.... .|.. ...+
T Consensus 160 g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~------Gld~~~~~~~~~~~~-~~s~~~~~~~~----~~~~~~~~~~~~ 228 (288)
T TIGR01692 160 GAGQAAKICNNMLLGISMIGTAEAMALGEKL------GLDPKVLFEIANTSS-GRCWSSDTYNP----VPGVMPQAPASN 228 (288)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCC-ccCcHHHHhCC----CccccccccccC
Confidence 4678899999999999999999999998753 399999999998763 35665442211 0000 0000
Q ss_pred -ccHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 010637 402 -VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTY 444 (505)
Q Consensus 402 -~~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~ 444 (505)
.++.| .+.-...+++.+...|-+.|+|+|....+...|...
T Consensus 229 ~~~~~f--~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a 270 (288)
T TIGR01692 229 GYQGGF--GTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLF 270 (288)
T ss_pred CCCCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 01222 223445677899999999999999999998877543
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.21 Score=49.04 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=69.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEE--------eCChHHHHHHHHhhcccCC-C-C--------eeeeCCHHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVY--------NRTTSKVDETLDRAHREGQ-L-P--------LTGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~--------dr~~~~~~~l~~~~~~~g~-~-~--------i~~~~s~~e~v 67 (505)
-+++.|-|.|.+|...|+.|.+.|..|... |.+.-.++++.+.....+. + . ....++.+++.
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il 111 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEIL 111 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccccccc
Confidence 357999999999999999999999887654 5554445555442111110 0 0 11111111444
Q ss_pred hhcCCCcEEEEEcCCCchHHHHHH-HHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 68 LSIQRPRSVIILVKAGSPVDQTIA-ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl~-~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.. ++|+++-|--.+....+.+. .+.+ .=++|+...|.... .+-...|.++|+.++.
T Consensus 112 ~~--~~DiliP~A~~~~I~~~~~~~~i~~---~akiIvegAN~p~t--~~a~~~L~~rGI~viP 168 (244)
T PF00208_consen 112 SV--DCDILIPCALGNVINEDNAPSLIKS---GAKIIVEGANGPLT--PEADEILRERGILVIP 168 (244)
T ss_dssp TS--SSSEEEEESSSTSBSCHHHCHCHHT---T-SEEEESSSSSBS--HHHHHHHHHTT-EEE-
T ss_pred cc--cccEEEEcCCCCeeCHHHHHHHHhc---cCcEEEeCcchhcc--HHHHHHHHHCCCEEEc
Confidence 32 49999998655433333333 2221 24789998888754 3333489999998774
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.13 Score=53.01 Aligned_cols=94 Identities=15% Similarity=0.202 Sum_probs=58.7
Q ss_pred CCcCCCCcEEEEcc-cHHHHHHHHHHHh-CCCc---EEEEeCC--hHHHHHHHHhhcccCCCCeeee-CCHHHHHhhcCC
Q 010637 1 MEASALSRIGLAGL-AVMGQNLALNVAE-KGFP---ISVYNRT--TSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQR 72 (505)
Q Consensus 1 m~~~~~~~IgIIGl-G~MG~~lA~~La~-~G~~---V~v~dr~--~~~~~~l~~~~~~~g~~~i~~~-~s~~e~v~~l~~ 72 (505)
|+.. .++|||||+ |..|.-|.+.|.+ ..++ +..+... ..+.-.+... .+.+. .+++++ ..
T Consensus 1 ~~~~-~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~-------~l~v~~~~~~~~-~~--- 68 (347)
T PRK06728 1 MSEK-GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR-------EIIIQEAKINSF-EG--- 68 (347)
T ss_pred CCCC-CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc-------ceEEEeCCHHHh-cC---
Confidence 4443 358999997 9999999999995 5677 4444322 2221111110 12221 244444 33
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.|++|+++|.+ ...++...+. ..|..|||.|+.+
T Consensus 69 ~Divf~a~~~~-~s~~~~~~~~---~~G~~VID~Ss~f 102 (347)
T PRK06728 69 VDIAFFSAGGE-VSRQFVNQAV---SSGAIVIDNTSEY 102 (347)
T ss_pred CCEEEECCChH-HHHHHHHHHH---HCCCEEEECchhh
Confidence 89999999986 4555554443 4689999998864
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.29 Score=46.94 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=31.5
Q ss_pred CCcCCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 1 m~~~~~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|...++++|-|+| .|.+|..++..|+++|++|.+..|+..
T Consensus 1 ~~~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~ 41 (249)
T PRK12825 1 MGSLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDE 41 (249)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCH
Confidence 5444456799997 499999999999999999887555543
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.39 Score=47.40 Aligned_cols=79 Identities=11% Similarity=0.214 Sum_probs=52.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..++..|++.|++|.+.+|++++.+.+...+ ...+..=+.+...
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~-----------------------~~~~~~Dv~~~~~ 60 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLG-----------------------VHPLSLDVTDEAS 60 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCC-----------------------CeEEEeeCCCHHH
Confidence 46778885 99999999999999999999999988765543211 2233333344445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (505)
++.+++.+.....+=+++|++..
T Consensus 61 ~~~~~~~~~~~~~~id~li~~ag 83 (273)
T PRK06182 61 IKAAVDTIIAEEGRIDVLVNNAG 83 (273)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 56666655554434466766654
|
|
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.56 Score=46.15 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=64.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.++-|+|.|..+..++..+...||+|+++|..++......-.+. .......+++....+...+.|+++.-+...=
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~t~vvi~th~h~~D 175 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGV-----ATLVTDEPEAEVAEAPPGSYFLVLTHDHALD 175 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCCc-----eEEecCCHHHHHhcCCCCcEEEEEeCChHHH
Confidence 57999999999999999999999999999977652211100000 1123345666666555567788777654322
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
..++..+++..+.. -|=-.++ -....++.+.|.+.|+
T Consensus 176 ~~~L~~aL~~~~~~-YIG~lGS--r~k~~~~~~~L~~~G~ 212 (246)
T TIGR02964 176 LELCHAALRRGDFA-YFGLIGS--KTKRARFEHRLRARGV 212 (246)
T ss_pred HHHHHHHHhCCCCc-EEEEeCC--HHHHHHHHHHHHhcCC
Confidence 23445544221111 2222222 1345555666666554
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.23 Score=51.89 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=33.1
Q ss_pred CCCcEEEE----c-ccHHHHHHHHHHHhCCCcEEEEeCChHH
Q 010637 5 ALSRIGLA----G-LAVMGQNLALNVAEKGFPISVYNRTTSK 41 (505)
Q Consensus 5 ~~~~IgII----G-lG~MG~~lA~~La~~G~~V~v~dr~~~~ 41 (505)
++++|-|+ | .|.+|..++..|.++||+|++.+|++..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 45689999 6 5999999999999999999999998765
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.21 Score=52.66 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=68.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|-+|..+|.+|+..|. +++++|.+.=....+..+.. .....+-.-+....+.+..+ .+++-+.+.+..
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~i~~~~~~ 120 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI-NPLVNVRLHEFR 120 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh-CCCcEEEEEecc
Confidence 3589999999999999999999997 68899877533333322110 00000000011112222221 256666655542
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-..+ -+.+ .+..=++|||++-.. ..-..+.+.+...++-|+.+.+.|
T Consensus 121 i~~~-~~~~---~~~~~D~Vvd~~d~~-~~r~~ln~~~~~~~~p~v~~~~~g 167 (392)
T PRK07878 121 LDPS-NAVE---LFSQYDLILDGTDNF-ATRYLVNDAAVLAGKPYVWGSIYR 167 (392)
T ss_pred CChh-HHHH---HHhcCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 2111 1222 344558999987653 333335566677788888766554
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.059 Score=55.89 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=33.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
++.+|.|||.|.-|..+|..|++.|++|.+++++++
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 456899999999999999999999999999998864
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.44 Score=47.82 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=80.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHH-HHHhcCCCCCCCcccH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIK-KAYQRNPNLASLVVDP 404 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~-~~~~~~~~~~~ll~~~ 404 (505)
+.++.+|+++|=+-.+.|++++|++.+-+++. +|.+.+.++-++| --+|+.++.-. ..++++ +++
T Consensus 165 G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G------ld~~~~~~vi~~~-~~~s~~~e~~~~~m~~~~-------~~p 230 (286)
T COG2084 165 GAGQAAKLANNILLAGNIAALAEALALAEKAG------LDPDVVLEVISGG-AAGSWILENYGPRMLEGD-------FSP 230 (286)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CCHHHHHHHHhcc-ccCChHHHhhcchhhcCC-------CCc
Confidence 57899999999999999999999999988654 9999999998887 35788877632 233322 123
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010637 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~ 445 (505)
-| .++-...+++-+...|.+.|+|+|..+.+.+.|+...
T Consensus 231 ~F--~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~ 269 (286)
T COG2084 231 GF--AVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAA 269 (286)
T ss_pred ch--hHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 33 2334566778889999999999999999999776543
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.34 Score=47.39 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=55.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.| .|.+|..++..|+++|++|.+.+|++++.+++.+.... . . . ...+-+=+.+...
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------~-~------~---~~~~~~Dl~~~~~ 64 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK--------A-A------R---VSVYAADVRDADA 64 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc--------C-C------e---eEEEEcCCCCHHH
Confidence 4677777 69999999999999999999999998877665442110 0 0 1 2233333333345
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+++.++++.....+-+++|++...
T Consensus 65 i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 65 LAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCc
Confidence 666666665555445788876553
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.076 Score=54.46 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=33.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVD 43 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~ 43 (505)
+++|||||-|..|..|+..-.+-|++|++.|.+++.-.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA 38 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPA 38 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCch
Confidence 35799999999999999999999999999998877543
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.57 Score=50.02 Aligned_cols=74 Identities=9% Similarity=0.179 Sum_probs=50.2
Q ss_pred CcEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChHHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhhcCCCcE
Q 010637 7 SRIGLAGLAVM-GQNLALNVAEK-----GFPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgIIGlG~M-G~~lA~~La~~-----G~~V~v~dr~~~~~~~l~~---~~~~-~g-~~~i~~~~s~~e~v~~l~~adv 75 (505)
|||+|||.|.. +..+...|+.. +-+|+++|.++++.+.... +... .| .+++..+.+.+++++. +|+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g---ADf 77 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD---ADF 77 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCC---CCE
Confidence 58999999875 22344445433 3589999999987655322 1111 01 1257888899998887 999
Q ss_pred EEEEcCCC
Q 010637 76 VIILVKAG 83 (505)
Q Consensus 76 Iil~vp~~ 83 (505)
||..+..+
T Consensus 78 Vi~~irvG 85 (437)
T cd05298 78 VFAQIRVG 85 (437)
T ss_pred EEEEeeeC
Confidence 99998665
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.065 Score=56.32 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=35.1
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|.+.+..+|.|||.|..|..+|..|+++|++|.++++++.
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5455556899999999999999999999999999998753
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.4 Score=47.30 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=53.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+...+ .+.+..=+.+...
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------------------~~~~~~Dl~~~~~ 58 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAG-----------------------FTAVQLDVNDGAA 58 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC-----------------------CeEEEeeCCCHHH
Confidence 35667775 99999999999999999999999987665443211 1222222334445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++++++.+.....+=+++|++...
T Consensus 59 ~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 59 LARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665544444777777653
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.34 Score=47.21 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=54.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|+|. |.+|..++..|+++|++|.+.+|+++..+.+.+.... . . ..++..=+.+...
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~-----------~---~~~~~~D~~~~~~ 72 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG-----A-----------K---VTATVADVADPAQ 72 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-----C-----------c---eEEEEccCCCHHH
Confidence 57888875 9999999999999999999999998766655433210 0 0 1122222223334
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+..+++++.+.+.+=+.||++....
T Consensus 73 ~~~~~~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 73 VERVFDTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCC
Confidence 5556666655555567777766543
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.18 Score=50.49 Aligned_cols=74 Identities=12% Similarity=0.232 Sum_probs=56.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|++++... .++++.+.. +|+||.++.....
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t---------------------~~l~~~~~~---ADIvI~AvG~p~~ 214 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT---------------------KNLAELTKQ---ADILIVAVGKPKL 214 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc---------------------hhHHHHHHh---CCEEEEecCCCCc
Confidence 57999995 8899999999999999999986321 245556666 9999999976542
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 215 IT------ADMVKEGAVVIDVGVNR 233 (284)
T ss_pred CC------HHHcCCCCEEEEeeccc
Confidence 22 12468999999998654
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.38 Score=47.70 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=31.1
Q ss_pred CCcCCCCcEE-EEccc---HHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 1 MEASALSRIG-LAGLA---VMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 1 m~~~~~~~Ig-IIGlG---~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|++.+..|+. |.|.+ -+|..+|+.|++.|++|.+.+|+.+
T Consensus 1 ~~~~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~ 44 (271)
T PRK06505 1 MEGLMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEA 44 (271)
T ss_pred CccccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchH
Confidence 5554444554 55876 6999999999999999999998754
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.29 Score=49.50 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=74.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHH-HH-HHHhcCCCCCCCccc
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDR-IK-KAYQRNPNLASLVVD 403 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~-i~-~~~~~~~~~~~ll~~ 403 (505)
+.++.+|.+.|-+..+.+...+|++.+.++. ++|...+.++.+.+. ..+..+.. .. .++..+. +
T Consensus 165 G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------Gld~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~-------~ 230 (296)
T PRK15461 165 GMGIRVKLINNYMSIALNALSAEAAVLCEAL------GLSFDVALKVMSGTA-AGKGHFTTTWPNKVLKGDL-------S 230 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCc-ccChHHHccccchhccCCC-------C
Confidence 4678899999999999999999999998854 399999999988762 33433332 21 1221111 2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010637 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~ 443 (505)
+.| .++-...+++-+...|-+.|+|+|...++...|..
T Consensus 231 ~~f--~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~ 268 (296)
T PRK15461 231 PAF--MIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQ 268 (296)
T ss_pred CCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 234 34455677899999999999999999999887654
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.35 Score=50.07 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=58.3
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeC---CHHHHH-hhc--CCCcEEEEEc
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHY---TPRDFV-LSI--QRPRSVIILV 80 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~---s~~e~v-~~l--~~advIil~v 80 (505)
+|.|+|+|.+|...+..+...|. +|.+.|+++++++...+.+... ..... +..+.+ +.. ..+|++|.|+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 69999999999998877777884 6778899999988776633221 11111 111111 111 2479999988
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.... .+++....+.++-.|+-.+..
T Consensus 247 G~~~----~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 247 GSPP----ALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCHH----HHHHHHHHhcCCCEEEEEecc
Confidence 7433 344444555555555555444
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.19 Score=50.67 Aligned_cols=74 Identities=18% Similarity=0.302 Sum_probs=56.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.+||..|.++|..|++++.. +.++++.+.. +|+||.++.-...
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------------------T~nl~~~~~~---ADIvv~AvGk~~~ 223 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------------------TPDPESIVRE---ADIVIAAAGQAMM 223 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999996 678999999999999999999643 1256666666 9999999966422
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 224 i~------~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 224 IK------GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 21 13578999999998754
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.41 Score=47.53 Aligned_cols=84 Identities=12% Similarity=0.130 Sum_probs=54.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCC
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
++|-|.| .|.+|..+++.|+++|++|.+.+|+.+..++..+.... .. .++.++. +.+.
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~~~D~~d~ 67 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA----------------QG---AEVLGVRTDVSDA 67 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh----------------cC---CeEEEEECCCCCH
Confidence 4577777 59999999999999999999999998766554432110 01 2332222 2333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..++.+++++.....+=++||++...
T Consensus 68 ~~~~~~~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 68 AQVEALADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45666666665554455788877654
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.8 Score=42.85 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=78.7
Q ss_pred EEEEc--ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 9 IGLAG--LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 9 IgIIG--lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+-=|| +|.++.-+| ++-..-+|+.++|+++.++........-|..++... .+..++...+.++|.||+-=. ..
T Consensus 38 l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg--~~ 113 (187)
T COG2242 38 LWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG--GN 113 (187)
T ss_pred EEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC--CC
Confidence 34454 566666666 444556899999999987766544332211133332 233445556667999998765 46
Q ss_pred HHHHHHHHHhcCCCC-cEEEecCCCCchhHHHHHHHHHHCCC-eEEeCCCCCCH
Q 010637 86 VDQTIAALSEHMSPG-DCIIDGGNEWYLNTERRIHEASQKGL-LYLGMGVSGGE 137 (505)
Q Consensus 86 v~~vl~~l~~~l~~g-~iIId~st~~~~~t~~~~~~l~~~gi-~~i~~pvsGg~ 137 (505)
++.+++.....|++| .+|++..+. ++.....+.+++.|+ ..+-..++-+.
T Consensus 114 i~~ile~~~~~l~~ggrlV~naitl--E~~~~a~~~~~~~g~~ei~~v~is~~~ 165 (187)
T COG2242 114 IEEILEAAWERLKPGGRLVANAITL--ETLAKALEALEQLGGREIVQVQISRGK 165 (187)
T ss_pred HHHHHHHHHHHcCcCCeEEEEeecH--HHHHHHHHHHHHcCCceEEEEEeecce
Confidence 899999999888775 566666553 455556677888888 66655555443
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.45 Score=46.46 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=35.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
+++-|+| .|.+|..++..|+++|++|.+.+|++++.+++..
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 4588887 5999999999999999999999999988777654
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.064 Score=56.53 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=31.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|+|.|||.|.+|.+.|..|+++|++|.++++...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 4799999999999999999999999999999754
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.21 Score=50.01 Aligned_cols=74 Identities=11% Similarity=0.236 Sum_probs=56.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHh--CCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+++.|||- ..+|.+||..|.+ ++..|+++... +.++++.+.. +|+||.++.-.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------------------T~~l~~~~k~---ADIvV~AvGkp 214 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------------------TRDLAAHTRR---ADIIVAAAGVA 214 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------------------CCCHHHHHHh---CCEEEEecCCc
Confidence 57999995 7899999999998 68889988643 1256666666 99999999775
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
..+. ...+++|.+|||.+...
T Consensus 215 ~~i~------~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 215 HLVT------ADMVKPGAAVLDVGVSR 235 (284)
T ss_pred CccC------HHHcCCCCEEEEccccc
Confidence 4322 13578999999998764
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.52 Score=49.26 Aligned_cols=124 Identities=13% Similarity=0.117 Sum_probs=68.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|.+|..++.+|+..|. ++.++|.+.=....+..+... ....+..-+....+-+..+ .+++-|...+..
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~ 119 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI-QPDIRVNALRER 119 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH-CCCCeeEEeeee
Confidence 3579999999999999999999996 899999885333232221000 0000000011122222222 155556665542
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
- ..+.+.+ .+..-|+|||++-.. ..-..+.+.+...++-++.+.+.|
T Consensus 120 i-~~~~~~~---~~~~~DlVid~~Dn~-~~r~~in~~~~~~~iP~v~~~~~g 166 (370)
T PRK05600 120 L-TAENAVE---LLNGVDLVLDGSDSF-ATKFLVADAAEITGTPLVWGTVLR 166 (370)
T ss_pred c-CHHHHHH---HHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEec
Confidence 1 1222223 344558999987763 333334456677788777765543
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.34 Score=47.38 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=52.1
Q ss_pred CCcCCCCc-EEEEccc---HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010637 1 MEASALSR-IGLAGLA---VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 1 m~~~~~~~-IgIIGlG---~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
|++.+..| +-|.|.+ -+|..+|+.|++.|++|.+.+|+. +.++..++. . . .. ...+
T Consensus 1 ~~~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~--------~--~------~~---~~~~ 60 (252)
T PRK06079 1 MSGILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKL--------V--D------EE---DLLV 60 (252)
T ss_pred CccccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhh--------c--c------Cc---eeEE
Confidence 66555434 5556874 799999999999999999999884 333222210 0 0 00 1122
Q ss_pred EEEcCCCchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
-.=+.+.+.++++++.+.....+=|++|++..
T Consensus 61 ~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAg 92 (252)
T PRK06079 61 ECDVASDESIERAFATIKERVGKIDGIVHAIA 92 (252)
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCCCEEEEccc
Confidence 22233445667777776655544467777654
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.2 Score=50.27 Aligned_cols=73 Identities=14% Similarity=0.257 Sum_probs=55.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||- ..+|.++|..|.++|..|++++... .++++...+ +|+||.++.-...
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~T---------------------~~L~~~~~~---ADIvV~AvGkp~~ 215 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT---------------------HNLSSITSK---ADIVVAAIGSPLK 215 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEccCCCCc
Confidence 47999996 7799999999999999999886321 245566665 9999999976543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+. ...+++|.+|||.+..
T Consensus 216 i~------~~~vk~GavVIDvGin 233 (288)
T PRK14171 216 LT------AEYFNPESIVIDVGIN 233 (288)
T ss_pred cC------HHHcCCCCEEEEeecc
Confidence 22 1347899999999865
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.36 Score=46.98 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=34.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
+++-|.|. |.+|..+++.|+++|++|.+.+|++++.+++.+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVA 48 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 35767775 899999999999999999999999887766654
|
|
| >PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.64 Score=39.79 Aligned_cols=100 Identities=12% Similarity=0.184 Sum_probs=67.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC--
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG-- 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~-- 83 (505)
..||-|+|-|.++..+.+.+.+.|+++.+.+.+++..... +.. +|.++..=+..
T Consensus 2 ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~---------------------~~~---ad~~~~~~~~~~~ 57 (110)
T PF00289_consen 2 IKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVSTH---------------------VDM---ADEAYFEPPGPSP 57 (110)
T ss_dssp SSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHH---------------------HHH---SSEEEEEESSSGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhccccc---------------------ccc---cccceecCcchhh
Confidence 4689999999999999999999999988877777542111 111 44443221221
Q ss_pred ---chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 84 ---SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 84 ---~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
..++.+++-... .|...+..+-+......++++.+.+.|+.|++.+
T Consensus 58 ~~yl~~e~I~~ia~~---~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 58 ESYLNIEAIIDIARK---EGADAIHPGYGFLSENAEFAEACEDAGIIFIGPS 106 (110)
T ss_dssp GTTTSHHHHHHHHHH---TTESEEESTSSTTTTHHHHHHHHHHTT-EESSS-
T ss_pred hhhccHHHHhhHhhh---hcCcccccccchhHHHHHHHHHHHHCCCEEECcC
Confidence 345555544433 2667778888888888899999999999998764
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A .... |
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.38 Score=46.74 Aligned_cols=41 Identities=27% Similarity=0.305 Sum_probs=34.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
++|-|.|. |.+|..++..|++.|++|.+.+|++++.+++.+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVA 49 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 46778875 899999999999999999999999887665543
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.78 Score=49.00 Aligned_cols=113 Identities=14% Similarity=0.163 Sum_probs=67.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChHH--HHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEEEc-
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSK--VDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILV- 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil~v- 80 (505)
++|.|||+|..|.+-+..|.+. |++|+++|..+.. .+.+.+ +. .+... .+++. +.. +|+||.+-
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~-----~~~~g~~~~~~-~~~---~d~vV~Spg 77 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DV-----ELHSGGWNLEW-LLE---ADLVVTNPG 77 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CC-----EEEeCCCChHH-hcc---CCEEEECCC
Confidence 5799999999999999999887 5899999976532 223322 21 12222 23333 343 89887754
Q ss_pred -CCCch-HHHHH---------HHHHh-cCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 81 -KAGSP-VDQTI---------AALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 81 -p~~~~-v~~vl---------~~l~~-~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
|.+.+ +.... -+++. .+....|-|.+|++...++.-+...+...|....
T Consensus 78 I~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~ 138 (438)
T PRK04663 78 IALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVA 138 (438)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 33222 22221 13332 2333456677777776666667777777776443
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.39 Score=46.60 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=65.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEE-----c
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIIL-----V 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~-----v 80 (505)
++|.=||+| |..|+.-||+.|.+|++.|.+++.++.........| ..+ -...+.+|+.+.=.+-|+|+.+ |
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g-v~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESG-VNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc-ccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 468889998 779999999999999999999988776654433221 111 1234666766532447988876 3
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEec
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDG 106 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~ 106 (505)
|+. +.++..+...++||-+++..
T Consensus 138 ~dp---~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 138 PDP---ESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred CCH---HHHHHHHHHHcCCCcEEEEe
Confidence 443 45677777888888777653
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.51 Score=45.54 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=34.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
++|-|.|. |.+|..++..|+++|++|.+.+|+.++.+++.+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 48 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARA 48 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH
Confidence 46778875 999999999999999999999999876655443
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.22 Score=49.71 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=56.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++.... .++++...+ ||+||.++.-..-
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~T---------------------~nl~~~~~~---ADIvI~AvGk~~~ 213 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT---------------------ADLAGEVGR---ADILVAAIGKAEL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEecCCcCc
Confidence 47999995 7899999999999999999985331 245566666 9999999976532
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 214 VK------GAWVKEGAVVIDVGMNR 232 (282)
T ss_pred cC------HHHcCCCCEEEEeecee
Confidence 22 13478999999998754
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.42 Score=49.09 Aligned_cols=83 Identities=14% Similarity=0.208 Sum_probs=55.4
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--EcCCCc
Q 010637 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~~ 84 (505)
.|-|.|. |-+|..+++.|++.|++|.+.+|++++.+++.++.... . .++.++ =+.+..
T Consensus 10 ~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~----------------g---~~~~~v~~Dv~d~~ 70 (334)
T PRK07109 10 VVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA----------------G---GEALAVVADVADAE 70 (334)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc----------------C---CcEEEEEecCCCHH
Confidence 4667775 99999999999999999999999988776655432100 0 223222 233444
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++.+...+.+=+++|++...
T Consensus 71 ~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 71 AVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCc
Confidence 5666666666655555788876553
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.38 Score=46.76 Aligned_cols=86 Identities=17% Similarity=0.241 Sum_probs=55.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.| .|.+|..+|..|+++|++|.+.+|+++..+.+.+..... . .+...+..-+.+.+.
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~-~~~~~~~~D~~~~~~ 68 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL----------------G-RRALAVPTDITDEDQ 68 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh----------------C-CceEEEecCCCCHHH
Confidence 4677787 499999999999999999999999987766554432100 0 001223333344455
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++.+.+.+.+=+.||++...
T Consensus 69 ~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 69 CANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHHHcCCccEEEECCcc
Confidence 666776666555555777776643
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.43 Score=49.72 Aligned_cols=118 Identities=9% Similarity=0.064 Sum_probs=62.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhh-c-ccCCCCe--eeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA-H-REGQLPL--TGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~-~-~~g~~~i--~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+|+|||+|-.|+.++..|++.|. ++.++|.+.=....+.... . .....+- .-+...++.+..+. +++ .+.+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in-~~I--~~~~ 253 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMR-RGI--VPHP 253 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhC-CeE--EEEe
Confidence 589999999999999999999997 7888887742211111110 0 0000000 00111222222221 343 3333
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGV 133 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pv 133 (505)
.. .-.+.+. .+..=++|++|.-... .-..+.+.+...++-|+++++
T Consensus 254 ~~-I~~~n~~----~L~~~DiV~dcvDn~~-aR~~ln~~a~~~gIP~Id~G~ 299 (393)
T PRK06153 254 EY-IDEDNVD----ELDGFTFVFVCVDKGS-SRKLIVDYLEALGIPFIDVGM 299 (393)
T ss_pred ec-CCHHHHH----HhcCCCEEEEcCCCHH-HHHHHHHHHHHcCCCEEEeee
Confidence 22 1112222 2445589999877543 222344566777888888764
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.53 Score=43.48 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=30.9
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHH
Q 010637 9 IGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 9 IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~ 46 (505)
+-|.|. |.+|.+++..|+++|++|.+++|+.+..+...
T Consensus 19 ~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~ 57 (169)
T PRK06720 19 AIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATV 57 (169)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 555676 56999999999999999999999987655443
|
|
| >COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.3 Score=48.28 Aligned_cols=115 Identities=18% Similarity=0.126 Sum_probs=85.9
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+..|+-|-|. |.+|+.....+.+.|.. .+-..+|.+--... .++.++++.+|+++.. .+|+-++.||+.
T Consensus 7 k~tkvivqGitg~~gtfh~~~~l~yGt~-~V~GvtPgkgG~~~--------~g~PVf~tV~EA~~~~-~a~~svI~Vp~~ 76 (293)
T COG0074 7 KDTKVIVQGITGKQGTFHTEQMLAYGTK-IVGGVTPGKGGQTI--------LGLPVFNTVEEAVKET-GANASVIFVPPP 76 (293)
T ss_pred CCCeEEEeccccccchHHHHHHHHhCCc-eeecccCCCCceEE--------cCccHHHHHHHHHHhh-CCCEEEEecCcH
Confidence 3467888995 99999999999999987 33344554321110 1356788999999886 799999999998
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
.+.+.+++.+...+ ..+++-+-+....|+.++.++++++|...+++
T Consensus 77 ~aadai~EAida~i--~liv~ITEgIP~~D~~~~~~~a~~~g~~iiGP 122 (293)
T COG0074 77 FAADAILEAIDAGI--KLVVIITEGIPVLDMLELKRYAREKGTRLIGP 122 (293)
T ss_pred HHHHHHHHHHhCCC--cEEEEEeCCCCHHHHHHHHHHHHhcCCEEECC
Confidence 77777777665543 24666667788888999999999999888874
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.37 Score=46.90 Aligned_cols=83 Identities=11% Similarity=0.226 Sum_probs=54.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE--EEcCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi--l~vp~~~ 84 (505)
++-|+| .|.+|..++..|+++|++|.+.+|++++.+.+....... . .++.+ .-+.+..
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dl~~~~ 64 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD----------------G---GKAIAVKADVSDRD 64 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CeEEEEECCCCCHH
Confidence 456666 589999999999999999999999988766654431100 0 12222 2234444
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++++++++.....+=+++|++...
T Consensus 65 ~~~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 65 QVFAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666676666555555778877654
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.076 Score=55.40 Aligned_cols=35 Identities=17% Similarity=0.428 Sum_probs=32.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|++|.|||.|..|..+|..|+++|++|.++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 46899999999999999999999999999999875
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.57 Score=46.13 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=35.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+++.+
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 47 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAA 47 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 46778875 999999999999999999999999988766543
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.46 Score=46.25 Aligned_cols=86 Identities=12% Similarity=0.142 Sum_probs=54.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..++..|+++|++|.+++|+++..+.+.++.... -.. .+.+..-+.+...
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 74 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA--------------GGA---AEALAFDIADEEA 74 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc--------------CCc---eEEEEccCCCHHH
Confidence 45777775 99999999999999999999999987766554321100 000 2222223344445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+..+++++...+.+=+.+|.+...
T Consensus 75 ~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 75 VAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665544444667766543
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.4 Score=50.05 Aligned_cols=108 Identities=13% Similarity=0.164 Sum_probs=66.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH------------------HHHHHHHhhcccCCCCeeeeCCHHHHHh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS------------------KVDETLDRAHREGQLPLTGHYTPRDFVL 68 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~------------------~~~~l~~~~~~~g~~~i~~~~s~~e~v~ 68 (505)
.+|+|=|.|++|..+|+.|.+.|.+|.+++-+.. +...+.... +.+.... +++..
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~------ga~~i~~-~e~~~ 280 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYA------GAEYITN-EELLE 280 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhc------CceEccc-ccccc
Confidence 5899999999999999999999999998876654 111111110 1233323 34433
Q ss_pred hcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
. .||+.+=|--.+....+-+.. |.. ++|+...|.. .|.+..+.+.++|+.|+.
T Consensus 281 ~--~cDIl~PcA~~n~I~~~na~~----l~a-k~V~EgAN~P--~t~eA~~i~~erGIl~~P 333 (411)
T COG0334 281 V--DCDILIPCALENVITEDNADQ----LKA-KIVVEGANGP--TTPEADEILLERGILVVP 333 (411)
T ss_pred c--cCcEEcccccccccchhhHHH----hhh-cEEEeccCCC--CCHHHHHHHHHCCCEEcC
Confidence 2 378776655443322223333 322 3888888875 445666667789987764
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.082 Score=54.83 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=32.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|+|.|||.|.-|..+|..|+++|++|.++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5899999999999999999999999999998875
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.11 Score=40.38 Aligned_cols=30 Identities=20% Similarity=0.522 Sum_probs=27.4
Q ss_pred EEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 11 LAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 11 IIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|||.|.-|...|..|+++|++|.++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998864
|
... |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.69 Score=46.00 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=57.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhc---CCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSI---QRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l---~~advIil~vp~ 82 (505)
.+|.|+|.|.+|...++.+...|.+ |.+.++++++.+.+.+.+... +....+..+.+..+ ...|++|-++..
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~~~~~~~g~d~vid~~G~ 197 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA----LAEPEVLAERQGGLQNGRGVDVALEFSGA 197 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE----ecCchhhHHHHHHHhCCCCCCEEEECCCC
Confidence 3689999999999998888888987 888899988877666544321 11111222222222 247888888765
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
...++. ....+.++-.++..+.
T Consensus 198 ~~~~~~----~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 198 TAAVRA----CLESLDVGGTAVLAGS 219 (280)
T ss_pred hHHHHH----HHHHhcCCCEEEEecc
Confidence 433333 3344555555555443
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.29 Score=48.79 Aligned_cols=99 Identities=13% Similarity=0.208 Sum_probs=52.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChHHHHHHHHhhc-----ccCCCCeee-eCCHHHHHhhcCCCcEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAH-----REGQLPLTG-HYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~-----~~g~~~i~~-~~s~~e~v~~l~~advIil 78 (505)
.+|.+||.|.+-...-.-...+ |..|..+|++++..+...+... .. ++.. +.+..++...++..|+|++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~---~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSK---RMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-S---SEEEEES-GGGG-GG----SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccC---CeEEEecchhccccccccCCEEEE
Confidence 4899999999976544333333 4568899999987654432211 11 2333 3444445455666899999
Q ss_pred EcCCC---chHHHHHHHHHhcCCCCcEEEecCC
Q 010637 79 LVKAG---SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 79 ~vp~~---~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+.-.+ ..=.++++.|...+++|..|+--+.
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 87665 2346788999999999998876543
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.43 Score=46.58 Aligned_cols=84 Identities=19% Similarity=0.273 Sum_probs=53.9
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE--EEEEcCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS--VIILVKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~adv--Iil~vp~~~ 84 (505)
++-|.| .|.+|..+++.|+++|++|.+.+|++++.+++.++.... ... .++ +..=+.+..
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~~~Dl~~~~ 71 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARD--------------VAG---ARVLAVPADVTDAA 71 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------cCC---ceEEEEEccCCCHH
Confidence 466666 589999999999999999999999988777665432100 000 222 222233444
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st 108 (505)
.++..++++.....+=+++|++..
T Consensus 72 ~~~~~~~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 72 SVAAAVAAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCC
Confidence 566666666655545577777654
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.4 Score=48.16 Aligned_cols=86 Identities=22% Similarity=0.265 Sum_probs=55.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|-|.|. |.+|..+|..|+++|++|.+.+|+.++.+++.+..... -.. ...+-.-+.+...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~--------------~~~---~~~~~~Dl~d~~~ 103 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA--------------GGD---AMAVPCDLSDLDA 103 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--------------CCc---EEEEEccCCCHHH
Confidence 45777775 99999999999999999999999988776665432100 000 1222222333345
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++.+...+.+=+++|++...
T Consensus 104 v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 104 VDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666666555555777776543
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.94 Score=45.62 Aligned_cols=106 Identities=17% Similarity=0.021 Sum_probs=67.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch-
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~- 85 (505)
++|+|||--.=-..+++.|+++|++|.+|.-.... ..+. ++..+++.++.++. +|+||+++|-...
T Consensus 2 ~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-~~~~---------~~~~~~~~~~~~~~---~~~~i~p~~~~~~~ 68 (287)
T TIGR02853 2 IHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-DGFT---------GAVKCELLELDLTT---LDVVILPVPGTSHD 68 (287)
T ss_pred cEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-cccc---------cceeecchhhhhcc---CCEEEECCccccCC
Confidence 47999998888899999999999999998755310 0011 24556677765665 9999999983221
Q ss_pred --HHHH-------H-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 86 --VDQT-------I-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 --v~~v-------l-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+..+ + ++++..++++.++.-+ ... . .+...++++|+.+++
T Consensus 69 ~~i~~~~~~~~~~l~~~~l~~~~~~~~~~~G-~~~-~---~l~~~a~~~gi~v~~ 118 (287)
T TIGR02853 69 GKVATVFSNEKVVLTPELLESTKGHCTIYVG-ISN-P---YLEQLAADAGVKLIE 118 (287)
T ss_pred ceEecccccCCccccHHHHHhcCCCCEEEEe-cCC-H---HHHHHHHHCCCeEEE
Confidence 1211 1 4566667665554433 222 1 223366778888774
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.088 Score=56.24 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=33.8
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 4 ~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+.++|+|||+|.-|.+.|++|.+.|++|.++.|+..
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 3456899999999999999999999999999999875
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.66 Score=46.18 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=67.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|+|+|-+|...|.+|++.| -+++++|.+.-....+..+... ....+-.-+....+-+..+ .+++-+..++..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I-NP~~~V~~i~~~ 108 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI-NPECRVTVVDDF 108 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH-CCCcEEEEEecc
Confidence 357999999999999999999999 5899998775433222211000 0000000000111222211 156656565432
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
- ..+-++.+.. ..-|+|||+.-.. .....+.+.+.+.++.|+.++
T Consensus 109 i-~~e~~~~ll~--~~~D~VIdaiD~~-~~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 109 I-TPDNVAEYMS--AGFSYVIDAIDSV-RPKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred c-ChhhHHHHhc--CCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 1 1222233321 2358999986543 334456777888888888663
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.26 Score=50.75 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=56.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++... +.++++.+.+ +|+||.++.-...
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------------------T~nl~~~~r~---ADIVIsAvGkp~~ 287 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------------------TKNPEEITRE---ADIIISAVGQPNM 287 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 47999995 789999999999999999998532 1356666666 9999999977543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.. ..+++|.+|||.+...
T Consensus 288 i~~------d~vK~GAvVIDVGIn~ 306 (364)
T PLN02616 288 VRG------SWIKPGAVVIDVGINP 306 (364)
T ss_pred CCH------HHcCCCCEEEeccccc
Confidence 221 3478999999998654
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.16 Score=53.14 Aligned_cols=36 Identities=28% Similarity=0.492 Sum_probs=32.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK 41 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~ 41 (505)
|++|||||.|..|..|+....+.|++|.++|.+++.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~ 37 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDS 37 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 458999999999999999999999999999988654
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.094 Score=55.03 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=31.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCCh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~ 39 (505)
+.+|.|||.|.+|.++|..|++. |++|+++|+.+
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 45899999999999999999998 99999999875
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.51 Score=49.91 Aligned_cols=108 Identities=15% Similarity=0.076 Sum_probs=63.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
|+|.|+|+|.-|.++|+.|. .|++|+++|..+.... ..+. ++... . .+... .+.+|+||.. +|.+.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~-------gi~~~-~-~~~~~-~~~~d~vv~sp~i~~~~ 68 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEE-------GNLLL-P-SNDFD-PNKSDLEIPSPGIPPSH 68 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhc-------CCEEe-c-HHHcC-cCCCCEEEECCCCCCCC
Confidence 57999999999999999999 9999999996643211 1111 13332 2 22221 1237877765 34432
Q ss_pred h-H---HHHHH--HHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 85 P-V---DQTIA--ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 85 ~-v---~~vl~--~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
+ + ++++. +++..+.+..|-|.+|++...++.-+...+...|.
T Consensus 69 ~~~~~a~~i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g~ 116 (401)
T PRK03815 69 PLIQKAKNLISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFGA 116 (401)
T ss_pred HHHHHHHHHhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCCC
Confidence 2 2 22221 22222223356677777777666667777877663
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.086 Score=53.49 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=29.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||.|.-|..+|..|+++|++|.++++++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 3699999999999999999999999999999875
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.63 Score=45.35 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=34.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
++|-|+|. |.+|..+++.|+++|++|.+.+|++.+.+...+
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAAD 49 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 46888887 999999999999999999999999876555443
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.59 Score=46.17 Aligned_cols=85 Identities=15% Similarity=0.220 Sum_probs=54.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.|. |.+|..+|+.|+++|++|.+.+|+ ++.+++.++.... -.. ...+.+=+.+...
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 68 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN--------------GGK---AKAYHVDISDEQQ 68 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc--------------CCe---EEEEEeecCCHHH
Confidence 35666675 899999999999999999999999 6555544321100 000 2233333445556
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++.+...+.+=+++|++...
T Consensus 69 ~~~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 69 VKDFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHHHHHHHHHcCCcCEEEECCCC
Confidence 677777776655555778877543
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.14 Score=40.83 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=30.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
||.|||.|..|.-+|..|++.|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 588999999999999999999999999998874
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=1.1 Score=48.27 Aligned_cols=111 Identities=16% Similarity=0.081 Sum_probs=66.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH-H---HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc--
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-K---VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV-- 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~-~---~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v-- 80 (505)
++|+|+|+|.-|.+.|+.|.+.|.+|.++|.++. . ..++.+.+. ........+.... +|+||.+-
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~---~d~vV~SpgI 79 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAAL------LVETEASAQRLAA---FDVVVKSPGI 79 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCE------EEeCCCChHHccC---CCEEEECCCC
Confidence 5799999999999999999999999999995432 1 123332110 1112222333343 89888764
Q ss_pred CCCch-HHHHH---------HHH-Hhc-CC-----CCcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 81 KAGSP-VDQTI---------AAL-SEH-MS-----PGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 81 p~~~~-v~~vl---------~~l-~~~-l~-----~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
|...+ +.... -++ ... .. +..|-|.+|++...++.-+...|...|.
T Consensus 80 ~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 142 (468)
T PRK04690 80 SPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGH 142 (468)
T ss_pred CCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 33322 22211 122 111 21 2356677788877777777778877664
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.75 Score=45.22 Aligned_cols=112 Identities=16% Similarity=0.216 Sum_probs=70.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChHHHHHHHHhhcccCCC--CeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQL--PLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~--~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.+|--||+|. | .++..+++.|.. |+++|.++..++...+.....+ . .+..... +. ..|+|+..+..
T Consensus 121 ~~VLDiGcGs-G-~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-~~~~~~~~~~--~~-----~fD~Vvani~~- 189 (250)
T PRK00517 121 KTVLDVGCGS-G-ILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-VELNVYLPQG--DL-----KADVIVANILA- 189 (250)
T ss_pred CEEEEeCCcH-H-HHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CCceEEEccC--CC-----CcCEEEEcCcH-
Confidence 4688999998 6 455667777765 9999999998876655432211 0 1111110 00 26888866544
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
..+..++..+...+++|..++-.+ ........+.+.+.+.|...+.
T Consensus 190 ~~~~~l~~~~~~~LkpgG~lilsg-i~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 190 NPLLELAPDLARLLKPGGRLILSG-ILEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEE-CcHhhHHHHHHHHHHCCCEEEE
Confidence 356677788888898877666433 3334555666777777776654
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.31 Score=48.82 Aligned_cols=74 Identities=14% Similarity=0.257 Sum_probs=55.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC----CCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEK----GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~----G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
++|.|||- ..+|.++|..|.++ +..|+++... +.++++.+.. +|+||.++.
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------------------T~~l~~~~~~---ADIvV~AvG 209 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------------------SENLTEILKT---ADIIIAAIG 209 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 57999996 77999999999988 6788887532 1245566666 999999997
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
-..-+. ...+++|.+|||.+...
T Consensus 210 ~p~~i~------~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 210 VPLFIK------EEMIAEKAVIVDVGTSR 232 (287)
T ss_pred CcCccC------HHHcCCCCEEEEecccc
Confidence 653322 13478999999998754
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.26 Score=48.99 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=57.5
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG-~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||-+ .+|.+|+..|..+++.|++++... .++.+..++ +|+++.++--...
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------------------~~l~~~~k~---ADIvv~AvG~p~~ 212 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------------------KDLASITKN---ADIVVVAVGKPHF 212 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------------------CCHHHHhhh---CCEEEEecCCccc
Confidence 479999975 579999999999999999997442 244555555 9999999966543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
++ .+.+.+|.++||.+....
T Consensus 213 i~------~d~vk~gavVIDVGinrv 232 (283)
T COG0190 213 IK------ADMVKPGAVVIDVGINRV 232 (283)
T ss_pred cc------cccccCCCEEEecCCccc
Confidence 33 346789999999987643
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.28 Score=50.20 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=56.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||- ..+|.++|..|.++|..|+++.... .++++.... +|+||.++.-..-
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 270 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------------------KDPEQITRK---ADIVIAAAGIPNL 270 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 47999995 7789999999999999999885321 245566666 9999999977543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 271 v~------~d~vk~GavVIDVGin~ 289 (345)
T PLN02897 271 VR------GSWLKPGAVVIDVGTTP 289 (345)
T ss_pred cC------HHHcCCCCEEEEccccc
Confidence 22 13478999999998754
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.29 Score=49.97 Aligned_cols=86 Identities=15% Similarity=0.188 Sum_probs=63.5
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHH
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~ 87 (505)
++-|.|.|..|+..|.++...|-+|.|++.+|-+.-+..-.| +++ ...+|++.. +|++|.++-.-
T Consensus 211 ~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdG-------f~V-~~m~~Aa~~---gDifiT~TGnk---- 275 (420)
T COG0499 211 NVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDG-------FRV-MTMEEAAKT---GDIFVTATGNK---- 275 (420)
T ss_pred eEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcC-------cEE-EEhHHhhhc---CCEEEEccCCc----
Confidence 577889999999999999999999999999997654444332 443 356777776 89999887553
Q ss_pred HHH-HHHHhcCCCCcEEEecCC
Q 010637 88 QTI-AALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 88 ~vl-~~l~~~l~~g~iIId~st 108 (505)
+|+ .+-...++.|.|+.+.+.
T Consensus 276 dVi~~eh~~~MkDgaIl~N~GH 297 (420)
T COG0499 276 DVIRKEHFEKMKDGAILANAGH 297 (420)
T ss_pred CccCHHHHHhccCCeEEecccc
Confidence 344 233445778888887764
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.45 Score=46.37 Aligned_cols=125 Identities=13% Similarity=0.087 Sum_probs=69.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|+|+|.+|..++.+|++.|. +++++|.+.=....+..+... ....+-.-+....+-+..+ .|++-+..++..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~i-nP~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDI-NPECEVDAVEEF 89 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHH-CCCcEEEEeeee
Confidence 3589999999999999999999997 788998775332222211100 0000000011112222222 156666665442
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
...+.+..+. ...-++|||+.-.. .....+.+.+.+.++.++.+.-.|
T Consensus 90 -i~~~~~~~l~--~~~~D~VvdaiD~~-~~k~~L~~~c~~~~ip~I~s~g~g 137 (231)
T cd00755 90 -LTPDNSEDLL--GGDPDFVVDAIDSI-RAKVALIAYCRKRKIPVISSMGAG 137 (231)
T ss_pred -cCHhHHHHHh--cCCCCEEEEcCCCH-HHHHHHHHHHHHhCCCEEEEeCCc
Confidence 1112223332 12358999986554 334456677778888888764333
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.21 Score=51.96 Aligned_cols=93 Identities=15% Similarity=0.232 Sum_probs=54.3
Q ss_pred CcEEEEcc-cHHHHHHHH-HHHhCCCc---EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGL-AVMGQNLAL-NVAEKGFP---ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~-~La~~G~~---V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
++|||||+ |..|.-|.+ .|....++ +..+..... ......-.... ..+....+.+++ .. +|++|+++|
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~s-g~~~~~f~g~~--~~v~~~~~~~~~-~~---~Divf~a~~ 74 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQA-GGAAPSFGGKE--GTLQDAFDIDAL-KK---LDIIITCQG 74 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhh-CCcccccCCCc--ceEEecCChhHh-cC---CCEEEECCC
Confidence 68999997 999999998 55556676 666543311 11110000000 011111234444 33 899999998
Q ss_pred CCchHHHHHHHHHhcCCCC--cEEEecCCCC
Q 010637 82 AGSPVDQTIAALSEHMSPG--DCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g--~iIId~st~~ 110 (505)
.+ ....+...+. ..| .+|||.|+.+
T Consensus 75 ~~-~s~~~~~~~~---~aG~~~~VID~Ss~f 101 (369)
T PRK06598 75 GD-YTNEVYPKLR---AAGWQGYWIDAASTL 101 (369)
T ss_pred HH-HHHHHHHHHH---hCCCCeEEEECChHH
Confidence 86 4555555443 357 5799998754
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.49 Score=48.10 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=54.5
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|-|.| .|-+|..+++.|+++|++|.+.+|+.++.+.+.+.... .. .. ..++..=+.+..
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~---------~~-----~~---~~~~~~Dl~~~~ 68 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGI---------PP-----DS---YTIIHIDLGDLD 68 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc---------cC-----Cc---eEEEEecCCCHH
Confidence 34577776 59999999999999999999999998887665543100 00 00 222223334444
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st 108 (505)
.++.+++++.....+=++||+...
T Consensus 69 ~v~~~~~~~~~~~~~iD~li~nAg 92 (322)
T PRK07453 69 SVRRFVDDFRALGKPLDALVCNAA 92 (322)
T ss_pred HHHHHHHHHHHhCCCccEEEECCc
Confidence 566666665544334477777654
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.48 Score=47.09 Aligned_cols=83 Identities=8% Similarity=0.065 Sum_probs=53.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--EcCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~~ 84 (505)
.+-|.| .|.+|..+|..|+++|++|.+.+|++++.+++.+.... .. .++.++ =+.+..
T Consensus 8 ~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~----------------~~---~~~~~~~~Dv~d~~ 68 (275)
T PRK05876 8 GAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRA----------------EG---FDVHGVMCDVRHRE 68 (275)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----------------cC---CeEEEEeCCCCCHH
Confidence 355555 69999999999999999999999998876655432110 00 222222 223334
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++++.....+=+++|++...
T Consensus 69 ~v~~~~~~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 69 EVTHLADEAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 5666666666555455778876543
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.49 Score=45.54 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=35.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
+++.|.|. |.+|..++..|+++|++|.+.+|++++.+++.+
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46888887 899999999999999999999999887766554
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.15 Score=51.55 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=46.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp 81 (505)
|+|.|.|. |.+|..++..|+++|++|.+.+|+++....+...+. .... ..+.+++.+.++.+|+||-+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-----~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDV-----EIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCc-----eEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 47889985 999999999999999999999998765433321111 0111 1233444444445788887653
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.11 Score=54.07 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=31.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||.|..|..+|..|+++|++|.++++++.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 4799999999999999999999999999998753
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.32 Score=49.56 Aligned_cols=73 Identities=10% Similarity=0.080 Sum_probs=48.7
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHH---HHHHhhcccCCC-----CeeeeCCHHHHHhhcCCCcE
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVD---ETLDRAHREGQL-----PLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~---~l~~~~~~~g~~-----~i~~~~s~~e~v~~l~~adv 75 (505)
..++|+|-|+ |.+|+.+...|+++||+|.+.-|+++.-+ .+.+.......+ .+.-..++.++++. ||.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~g---cdg 81 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDG---CDG 81 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhC---CCE
Confidence 4568999986 99999999999999999999999987622 233321111001 12223455556665 888
Q ss_pred EEEEc
Q 010637 76 VIILV 80 (505)
Q Consensus 76 Iil~v 80 (505)
||-+.
T Consensus 82 VfH~A 86 (327)
T KOG1502|consen 82 VFHTA 86 (327)
T ss_pred EEEeC
Confidence 87654
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.12 Score=53.78 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=32.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
++++|.|||.|.+|.+.|..|+++|++|+++++...
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 456899999999999999999999999999998764
|
|
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=2.1 Score=45.68 Aligned_cols=117 Identities=10% Similarity=0.046 Sum_probs=71.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCC----------hHHHHHHHHhhccc-CC---C-----CeeeeCCHHHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRT----------TSKVDETLDRAHRE-GQ---L-----PLTGHYTPRDF 66 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~-v~dr~----------~~~~~~l~~~~~~~-g~---~-----~i~~~~s~~e~ 66 (505)
++|.|-|.|++|...|..|.+.|.+|. +.|.+ .+++..+.+..... +. . +.+.. +.+++
T Consensus 238 k~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~-~~~~~ 316 (454)
T PTZ00079 238 KTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV-PGKKP 316 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-CCcCc
Confidence 579999999999999999999999988 77877 55654433211100 00 0 11111 22222
Q ss_pred HhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.. -.||+.+-|-..+..-.+..+.|... .=++|+...|... |.+..+.+.++|+.|+.
T Consensus 317 ~~--~~cDI~iPcA~~n~I~~~~a~~l~~~--~ak~V~EgAN~p~--t~eA~~~L~~~GI~~~P 374 (454)
T PTZ00079 317 WE--VPCDIAFPCATQNEINLEDAKLLIKN--GCKLVAEGANMPT--TIEATHLFKKNGVIFCP 374 (454)
T ss_pred cc--CCccEEEeccccccCCHHHHHHHHHc--CCeEEEecCCCCC--CHHHHHHHHHCCcEEEC
Confidence 22 13888887765543223333444321 2357788777743 34677788999998874
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.3 Score=42.44 Aligned_cols=77 Identities=12% Similarity=0.160 Sum_probs=52.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh-HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||.|..|..=+..|.+.|-+|+++..+. +....+...+... -+...-.++++. .+++||.++.+. .
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~---~~~~~~~~~~~~----~~~lviaAt~d~-~ 84 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIK---WIEREFDAEDLD----DAFLVIAATDDE-E 84 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcc---hhhcccChhhhc----CceEEEEeCCCH-H
Confidence 579999999999999999999999999997776 4555555543210 011122333333 389999999885 4
Q ss_pred HHHHHH
Q 010637 86 VDQTIA 91 (505)
Q Consensus 86 v~~vl~ 91 (505)
+.+-+.
T Consensus 85 ln~~i~ 90 (210)
T COG1648 85 LNERIA 90 (210)
T ss_pred HHHHHH
Confidence 554443
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=1.5 Score=41.92 Aligned_cols=41 Identities=15% Similarity=0.350 Sum_probs=35.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKK 47 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46888876 889999999999999999999999987766543
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.52 Score=45.57 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=51.5
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEE-eCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVY-NRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~-dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+++|-|.|. |.+|..+++.|+++|++|.+. .|++++.+.+.+..... -.. ...+..-+.+.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~ 64 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAA--------------GGR---ACVVAGDVANE 64 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--------------CCc---EEEEEeccCCH
Confidence 456888875 889999999999999999765 56666555443321100 000 12222223333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..+++.++++.+.+.+=+++|.+...
T Consensus 65 ~~~~~~~~~~~~~~~~id~li~~ag~ 90 (248)
T PRK06947 65 ADVIAMFDAVQSAFGRLDALVNNAGI 90 (248)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 45566666665545455677766553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 505 | ||||
| 2w8z_A | 470 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 1e-145 | ||
| 2w90_A | 471 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 1e-145 | ||
| 2iyo_A | 472 | Structural Characterization Of A Bacterial 6pdh Rev | 1e-135 | ||
| 2iyp_A | 473 | Product Rup Length = 473 | 1e-135 | ||
| 2iz0_A | 474 | Pex Inhibitor-Home Data Length = 474 | 1e-135 | ||
| 3fwn_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 1e-134 | ||
| 2zya_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 1e-132 | ||
| 2zyg_A | 480 | Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenas | 1e-132 | ||
| 1pgn_A | 482 | Crystallographic Study Of Coenzyme, Coenzyme Analog | 1e-128 | ||
| 2jkv_A | 505 | Structure Of Human Phosphogluconate Dehydrogenase I | 1e-126 | ||
| 4gwg_A | 484 | Crystal Structure Analysis Of 6-Phosphogluconate De | 1e-125 | ||
| 2p4q_A | 497 | Crystal Structure Analysis Of Gnd1 In Saccharomyces | 1e-124 | ||
| 1pgj_A | 478 | X-Ray Structure Of 6-Phosphogluconate Dehydrogenase | 8e-77 | ||
| 4e21_A | 358 | The Crystal Structure Of 6-Phosphogluconate Dehydro | 5e-18 | ||
| 2uyy_A | 316 | Structure Of The Cytokine-Like Nuclear Factor N-Pac | 2e-07 | ||
| 3doj_A | 310 | Structure Of Glyoxylate Reductase 1 From Arabidopsi | 6e-07 | ||
| 1wp4_A | 289 | Structure Of Tt368 Protein From Thermus Thermophilu | 9e-07 | ||
| 3cky_A | 301 | Structural And Kinetic Properties Of A Beta-Hydroxy | 4e-05 | ||
| 2cvz_A | 289 | Structure Of Hydroxyisobutyrate Dehydrogenase From | 1e-04 |
| >pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 470 | Back alignment and structure |
|
| >pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 471 | Back alignment and structure |
|
| >pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals Aspects Of Specificity, Mechanism And Mode Of Inhibition Length = 472 | Back alignment and structure |
|
| >pdb|2IYP|A Chain A, Product Rup Length = 473 | Back alignment and structure |
|
| >pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data Length = 474 | Back alignment and structure |
|
| >pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate And 2'-Monophosphoadenosine-5'-Diphosphate Length = 480 | Back alignment and structure |
|
| >pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate Length = 480 | Back alignment and structure |
|
| >pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase Length = 480 | Back alignment and structure |
|
| >pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And Substrate Binding In 6-Phosphogluconate Dehydrogenase: Implications For Nadp Specificity And The Enzyme Mechanism Length = 482 | Back alignment and structure |
|
| >pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In Complex With Nadph At 2.53a Length = 505 | Back alignment and structure |
|
| >pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate Dehydrogenase Apo- Form Length = 484 | Back alignment and structure |
|
| >pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces Cerevisiae Length = 497 | Back alignment and structure |
|
| >pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From The Protozoan Parasite T. Brucei Length = 478 | Back alignment and structure |
|
| >pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase From Geobacter Metallireducens Length = 358 | Back alignment and structure |
|
| >pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316 | Back alignment and structure |
|
| >pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310 | Back alignment and structure |
|
| >pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301 | Back alignment and structure |
|
| >pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 505 | |||
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 0.0 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 0.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 0.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 0.0 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 0.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 1e-130 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 1e-20 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 2e-20 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 2e-20 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 3e-20 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 4e-20 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 5e-20 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 4e-19 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 6e-19 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 2e-18 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 4e-18 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 7e-18 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 8e-18 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 9e-18 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 2e-16 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 3e-15 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 3e-12 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 4e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-06 |
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482 | Back alignment and structure |
|---|
Score = 816 bits (2110), Expect = 0.0
Identities = 244/478 (51%), Positives = 321/478 (67%), Gaps = 11/478 (2%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A + I L GLAVMGQNL LN+ + GF + +NRT SKVD+ L A+ + G ++
Sbjct: 1 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVLGAHSLE 58
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
+ V +++PR +I+LVKAG VD I L + GD IIDGGN Y +T RR + K
Sbjct: 59 EMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDK 118
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGS 183
G+L++G GVSGGE+GAR+GPSLMPGG+ EA+ +I+ I Q +AA+V G PC ++G+ G+
Sbjct: 119 GILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGA 178
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243
G+FVKMVHNGIEYGDMQLI EAY ++K V GL + E+A+ F+EWNK EL+SFL+EITA I
Sbjct: 179 GHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASI 238
Query: 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE 303
K +D G+ L+ KI D G KGTGKWT A E V I ++ R LS LK+ER
Sbjct: 239 LKFQDADGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERI 297
Query: 304 KAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 363
+A+K LK QN+ DKK ++D+R+ALYASKI SYAQG LLR + E GW
Sbjct: 298 QASKKLKGP------QNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWT 351
Query: 364 LNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423
LN+G +A +W+GGCIIR+VFL +IK A+ RNP L +L++D F + Q +WRR +
Sbjct: 352 LNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAIST 411
Query: 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSF-HTEWT 480
+ AGI P +LS++D YR A LPANL+QAQRD FGAHTYE + +PG F HT WT
Sbjct: 412 GVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWT 469
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474 | Back alignment and structure |
|---|
Score = 815 bits (2108), Expect = 0.0
Identities = 235/479 (49%), Positives = 322/479 (67%), Gaps = 12/479 (2%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A + G+ G+AVMG+NLALNV +G+ +++YNRTTSK +E + L T
Sbjct: 4 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKN---LVFTKTLE 60
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
+FV S+++PR ++++V+AG+ D TI +L + GD +IDGGN + +T RR E +
Sbjct: 61 EFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADS 120
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV--DDGPCVTYIGEGG 182
G+ ++G GVSGGE+GA GPS+MPGG EAY+ + I +++AA+ D PCV Y+G G
Sbjct: 121 GINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANG 180
Query: 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242
+G++VKMVHNGIEYGDMQLI+E+YD+LK + GLSNAE+ IF+EWN+GEL+S+L+EIT +
Sbjct: 181 AGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKE 240
Query: 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEER 302
+ K KD+ GEG +VDKILDK G KGTGKWT + A +L V P I S+ RY+S K+ER
Sbjct: 241 VLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDER 300
Query: 303 EKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGW 362
KA+KVL L DKK +I+ +R+ALY SKI SYAQG LR S E W
Sbjct: 301 VKASKVLSGPALDFSG-------DKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDW 353
Query: 363 NLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVG 422
+L +G +A+IW+ GCIIRA FL I A+ ++ L +L++D F + Q A R VV
Sbjct: 354 DLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVS 413
Query: 423 LAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481
LA+ AG P +++SY+D+YR LPANL+QAQRD FGAHTYER D+ G FH +W
Sbjct: 414 LAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWYT 472
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480 | Back alignment and structure |
|---|
Score = 814 bits (2105), Expect = 0.0
Identities = 237/476 (49%), Positives = 318/476 (66%), Gaps = 12/476 (2%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
+ +IG+ G+AVMG+NLALN+ +G+ +S++NR+ K +E + + L +YT +
Sbjct: 14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGK---KLVPYYTVK 70
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
+FV S++ PR ++++VKAG+ D I +L ++ GD IIDGGN ++ +T RR E S +
Sbjct: 71 EFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAE 130
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGS 183
G ++G GVSGGEEGA GPS+MPGG EAY + IL K+AA +DG PCVTYIG G+
Sbjct: 131 GFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGA 190
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243
G++VKMVHNGIEYGDMQLI+EAY +LK L+N ELA+ F EWN GEL S+L++IT DI
Sbjct: 191 GHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDI 250
Query: 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE 303
F KDE G LVD ILD+ KGTGKWT Q A +L I S+ RY+S LK++R
Sbjct: 251 FTKKDEDGN-YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRV 309
Query: 304 KAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 363
A+KVL + DK I+ VR+ALY KI SYAQG + LR+ S E W+
Sbjct: 310 AASKVLSGPQAQPAG-------DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWD 362
Query: 364 LNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423
LN+GE+A+I++ GCIIRA FL +I A NP +A+L++ P F + Q A R VV
Sbjct: 363 LNYGEIAKIFRAGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAY 422
Query: 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
A+ GI P A+++Y+D+YR A LPANL+QAQRD FGAHTY+RID+ G FHTEW
Sbjct: 423 AVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW 478
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 805 bits (2081), Expect = 0.0
Identities = 231/488 (47%), Positives = 316/488 (64%), Gaps = 16/488 (3%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
+ GL GLAVMGQNL LN A+ GF + YNRT SKVD L + + G
Sbjct: 5 HHHHMSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGK--SIIGA 62
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
+ DF+ ++RPR V++LVKAG+PVD I + + GD IIDGGN + ++ RR E
Sbjct: 63 TSIEDFISKLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEE 122
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
+KG+L++G GVSGGEEGAR+GPSLMPGGS EA+ +I++I Q ++A+ D PC ++G
Sbjct: 123 LKKKGILFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQSISAKSDGEPCCEWVGP 182
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
G+G++VKMVHNGIEYGDMQLI EAYD++K +GG ++ E++++F +WN G L+SFLVEIT
Sbjct: 183 AGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEIT 242
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
DI K D G+ LV+KI+D G KGTGKWT A +L + I ++ R LS LK
Sbjct: 243 RDILKFDDVDGK-PLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKN 301
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ER +A+KVL + + D+++ +DD+ QALYASKI SYAQG L+R +
Sbjct: 302 ERIRASKVLPGPEVPKDAV-----KDREQFVDDLEQALYASKIISYAQGFMLIREAAATY 356
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GW LN +A +W+GGCIIR+VFL +I KAY+ P+L +L+ + FA + + Q+ WR+
Sbjct: 357 GWKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKFFADAVTKAQSGWRKS 416
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGS------ 474
+ LA + GI TP +LS++D YR RLPANL+QAQRD FGAHT+ + S
Sbjct: 417 IALATTYGIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVD 476
Query: 475 --FHTEWT 480
H WT
Sbjct: 477 KDIHINWT 484
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 | Back alignment and structure |
|---|
Score = 768 bits (1985), Expect = 0.0
Identities = 168/479 (35%), Positives = 260/479 (54%), Gaps = 10/479 (2%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLP-LTGHYTPRDFV 67
+G+ GL VMG NLALN+AEKGF ++V+NRT SK +E + L T F
Sbjct: 4 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFA 63
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
S+++PR +ILV+AG+ D TI L + GD ++D GN + + RR + GL
Sbjct: 64 ASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR 123
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 186
+LGMG+SGGEEGAR GP+ PGG+ + IR I++ AA+ DDG PCVT G GG+G+
Sbjct: 124 FLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSC 183
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEW-NKGELESFLVEITADIFK 245
VKM HN EY +Q+ E +D+L+ + GL+N E+A + ++W +K L+S++++I+ +
Sbjct: 184 VKMYHNSGEYAILQIWGEVFDILRAM-GLNNDEVAAVLEDWKSKNFLKSYMLDISIAAAR 242
Query: 246 VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKA 305
KD+ G L + ++D+ G KGTG W+ Q+A E+ V AP++ ++ R + K ER+
Sbjct: 243 AKDKDGS-YLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQAN 301
Query: 306 AKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLN 365
A I + ++ + I YAQ LR + LN
Sbjct: 302 ASNAPGITQSPGYTLKNKS-PSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLN 360
Query: 366 FGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA- 424
++ GCI++ L + +A+++NPN+++L+ F E+ +R +V L
Sbjct: 361 LPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMCA--FQTEIRAGLQNYRDMVALIT 418
Query: 425 ISAGISTPGMCASLSYFDTYRRARLP-ANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
+S P + ASL+Y L LV QRD+FG H YER+D+ G +W +L
Sbjct: 419 SKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQWPEL 477
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
Score = 381 bits (980), Expect = e-130
Identities = 87/345 (25%), Positives = 155/345 (44%), Gaps = 53/345 (15%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG+ GL MG ++ + + G VY+ + V REG + G + +F
Sbjct: 24 QIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQA----LEREG---IAGARSIEEFC 76
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
+ +PR V ++V A VD + ++ ++ D +IDGGN Y + RR + +G+
Sbjct: 77 AKLVKPRVVWLMVPAA-VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGIT 135
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT----------- 176
Y+ +G SGG G G LM GG +A + + + +A + P
Sbjct: 136 YVDVGTSGGIFGLERGYCLMIGGEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAEL 195
Query: 177 ---YIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA--------------- 218
+ G G+G+FVKMVHNGIEYG M +E ++L H
Sbjct: 196 GYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDF 255
Query: 219 -----ELAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWT 272
+LA+I + W +G + S+L++++A + + + + G G+WT
Sbjct: 256 YRYDLDLADITEVWRRGSVISSWLLDLSATALLDSPD------LQEFQGRVSDSGEGRWT 309
Query: 273 VQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDE 317
V A + V A ++++L R+ S +++ A ++L + ++ E
Sbjct: 310 VAAAIDEGVPAHVLSSALYERFSSRGEDDF--ANRLL--SAMRYE 350
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 1e-20
Identities = 41/209 (19%), Positives = 78/209 (37%), Gaps = 34/209 (16%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG GL +MG + N+ + G ++V+NRT K D + R G+ TP + V
Sbjct: 32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGR-------TPAEVV 84
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT------ERRI 118
V + + + + PG C +D + +
Sbjct: 85 ---STCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVD-------MSTVDADTVTEL 134
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
+ +G +L VSG ++ + G ++ G Y + Q + G
Sbjct: 135 AQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAM------GKTSF 188
Query: 177 YIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
++GE G+ + ++ N ++ M I+E
Sbjct: 189 FLGEVGNAAKMMLIVNMVQGSFMATIAEG 217
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 34/210 (16%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+ G GL +MG +A N+ GF ++V+NR +K + R+ +P +
Sbjct: 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQAS-------SPAEV 54
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT------ERR 117
I ++ + + + E + G ID +
Sbjct: 55 C---AACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYID-------MSTVDDETSTA 104
Query: 118 IHE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCV 175
I + +G +L VSG ++ A G ++ G + + + G
Sbjct: 105 IGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAAL------GKKC 158
Query: 176 TYIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
++GE G G +K+V N I M + E
Sbjct: 159 LHLGEVGQGARMKLVVNMIMGQMMTALGEG 188
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 44/215 (20%), Positives = 88/215 (40%), Gaps = 34/215 (15%)
Query: 2 EASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY 61
S + +G GL +MG+ +++N+ + GF ++V+NRT SK DE ++ +
Sbjct: 17 RGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCE------- 69
Query: 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT---- 114
+P + + ++ + I ++ + + E + G ID +
Sbjct: 70 SPAEVI---KKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYID-------MSTVDA 119
Query: 115 --ERRIHE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVD 170
+I+E + KG ++ VSG ++ A G ++ G + +
Sbjct: 120 ETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVL----- 174
Query: 171 DGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
G Y+G+ G+G +K++ N I M SE
Sbjct: 175 -GKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEG 208
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 3e-20
Identities = 41/209 (19%), Positives = 79/209 (37%), Gaps = 34/209 (16%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+ G GL +MG +A N+ + G ++++NR+ K +E TP + V
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAA-------TPCEVV 55
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT------ERRI 118
+ ++ + ++ + E + G +D + +RI
Sbjct: 56 ---ESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVD-------MSTVDPATSQRI 105
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
KG +L VSG ++ A G ++ G Y+ +K+ G +
Sbjct: 106 GVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKM------GKKII 159
Query: 177 YIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
++G+ G G +K+V N + G M E
Sbjct: 160 HLGDVGKGAEMKLVVNMVMGGMMACFCEG 188
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 4e-20
Identities = 45/209 (21%), Positives = 86/209 (41%), Gaps = 34/209 (16%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL +MG+ ++ N+ + G+ + V +R + + + G T +
Sbjct: 7 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA----AG---AETASTAKAIA 59
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT------ERRI 118
++ +I ++ V + + E PG +ID + R I
Sbjct: 60 ---EQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLID-------MSSIAPLASREI 109
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
+ KG+ L VSGGE A G S+M GG ++ D+++ + V
Sbjct: 110 SDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAM------AGSVV 163
Query: 177 YIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
+ G+ G+GN K+ + I ++ +SEA
Sbjct: 164 HTGDIGAGNVTKLANQVIVALNIAAMSEA 192
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 5e-20
Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 34/209 (16%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+I G MG +A + E G+ + V+NRT ++ H R
Sbjct: 32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGAT-------IHEQARAA 84
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAA--LSEHMSPGDCIIDGGNEWYLNT------ERRI 118
+ V+ +++ G+ V + A ++ M PG +D R
Sbjct: 85 A---RDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLD-------MASITPREARDH 134
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
G+ +L VSGG GA G +M GG + +L+ T
Sbjct: 135 AARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGR-------AT 187
Query: 177 YIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
++G GSG K+ + I + ++EA
Sbjct: 188 HVGPHGSGQLTKLANQMIVGITIGAVAEA 216
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 4e-19
Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 35/209 (16%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL +MG +A+N+A G + V + A T R
Sbjct: 5 KLGFIGLGIMGSPMAINLARAGHQLHVTTIGPVADELLSLGA--------VNVETARQVT 56
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT------ERRI 118
+ + I+V V+ + ++ G I+D + +R
Sbjct: 57 ---EFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVD-------MSSISPIETKRF 106
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
+ ++ G YL VSGGE GAR G S+M GG + ++ ++ + + G +T
Sbjct: 107 AQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDIL------GKNIT 160
Query: 177 YIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
+G G G K+ + I +++ +SEA
Sbjct: 161 LVGGNGDGQTCKVANQIIVALNIEAVSEA 189
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 6e-19
Identities = 47/224 (20%), Positives = 75/224 (33%), Gaps = 33/224 (14%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL MG +A + E ++VY+ + G T + D
Sbjct: 17 KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTP----LAEAG---ATLADSVADVA 69
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL------NTERRIHE- 120
+ I V + V + + L+ H PG I T +
Sbjct: 70 ----AADLIHITVLDDAQVREVVGELAGHAKPGTVIAI-------HSTISDTTAVELARD 118
Query: 121 ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179
+ + + VSGG A G + M G E Y I+ + AA V + G
Sbjct: 119 LKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAV------VIHAG 172
Query: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
E G+G +K+ N + + EA L GL L +
Sbjct: 173 EPGAGTRMKLARNMLTFTSYAAACEAM-KLAEAAGLDLQALGRV 215
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 2e-18
Identities = 33/236 (13%), Positives = 72/236 (30%), Gaps = 34/236 (14%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTG 59
+ S + + GL MG +A + ++G ++++NR+ K + AH
Sbjct: 4 SDESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCE------ 57
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALS-EHMSPGDCIIDGGNEWYLNT---- 114
+ + + + I ++ + + I+D T
Sbjct: 58 --SVKAAL---SASPATIFVLLDNHATHEVLGMPGVARALAHRTIVD------YTTNAQD 106
Query: 115 -ERRIHE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDD 171
+ +Q G Y+ + H + G EA+ R +L+ +
Sbjct: 107 EGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGL------ 160
Query: 172 GPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEW 227
++ + V + + M EA GL ++ A + E
Sbjct: 161 AGHTVFLPWDEALA-FATVLHAHAFAAMVTFFEAV-GAGDRFGLPVSKTARLLLET 214
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 4e-18
Identities = 53/225 (23%), Positives = 87/225 (38%), Gaps = 35/225 (15%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
++ GL MG +A ++A + + V+NRT K + P +
Sbjct: 2 EKVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEF--------GSEAVPLER 52
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT------ERRIHE 120
V R + + V + AL ++ G +D T RR+ E
Sbjct: 53 V---AEARVIFTCLPTTREVYEVAEALYPYLREGTYWVD-------ATSGEPEASRRLAE 102
Query: 121 -ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYI 178
+KG+ YL VSGG GA G ++M GG EA +R L V ++
Sbjct: 103 RLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLAY-------AKKVVHV 155
Query: 179 GEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
G G+G+ VK ++N + ++ E L G+S + E+
Sbjct: 156 GPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQ-GVSAEKALEV 199
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 8e-18
Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 34/210 (16%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+G+ GL MG A + G + L EG + R+F
Sbjct: 9 HVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLA----EGACGAAA--SAREFA 62
Query: 68 LSIQRPRSVIILVKAGSPVDQTI---AALSEHMSPGDCIIDGGNEWYLNT------ERRI 118
+++ILV + V Q + ++ M PG ++ ++ + I
Sbjct: 63 ---GVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMV-------SSTISSADAQEI 112
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
+ L L VSGG A G ++M GS A+ ++ +L VA+ V
Sbjct: 113 AAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASN------VY 166
Query: 177 YIGE-GGSGNFVKMVHNGIEYGDMQLISEA 205
I + G+G+ VK++H + + +EA
Sbjct: 167 RISDTPGAGSTVKIIHQLLAGVHIAAAAEA 196
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 9e-18
Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 33/226 (14%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG GL MG+ +A+N+ ++G + ++ + V + +G +
Sbjct: 6 KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVA----QG---AQACENNQKVA 58
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT-----ERRIH 119
+ + V+ + + G I+D +++ ++
Sbjct: 59 ---AASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVD------MSSVSPSSTLKMA 109
Query: 120 E-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTY 177
+ A++KG+ Y+ VSGG +GA G ++M G S + I+ +L + + +
Sbjct: 110 KVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKD------IYH 163
Query: 178 IGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
+G+ G+G+ VK+V+N + +M ++EA VL GL + EI
Sbjct: 164 VGDTGAGDAVKIVNNLLLGCNMASLAEAL-VLGVKCGLKPETMQEI 208
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 2e-16
Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 33/226 (14%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+G GL MG +A N+ + G+P+ +Y+ E G +P D
Sbjct: 2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKE----FQDAG---EQVVSSPADVA 54
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT-----ERRIH 119
++ +I ++ + + + + + G +ID +T + +
Sbjct: 55 ---EKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDS------STIDPAVSKELA 105
Query: 120 E-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTY 177
+ + G +++ VSGG AR G + M GG + + +++L + + V Y
Sbjct: 106 KEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSN------VVY 159
Query: 178 IGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
G G+G K+ +N + M +EA L GL LA+I
Sbjct: 160 CGAVGTGQAAKICNNMLLAISMIGTAEAM-NLGIRLGLDPKLLAKI 204
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 3e-15
Identities = 34/233 (14%), Positives = 73/233 (31%), Gaps = 35/233 (15%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTG 59
+++A+ ++G G +A + + G ++ Y+ +++ RA G ++
Sbjct: 20 FQSNAM-KLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAE--SWRPRAEELG---VSC 73
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT----- 114
+ + VI + + H+ G D +
Sbjct: 74 KASVAEVA----GECDVIFSLVTAQAALEVAQQAGPHLCEGALYAD------FTSCSPAV 123
Query: 115 ERRIHE---ASQKGLLYLGMGVSGGEEGARHG-PSLMPGGSFEAYNNIRDILQKVAAQVD 170
+R I + + Y + V + H P ++ G + ++
Sbjct: 124 KRAIGDVISRHRPSAQYAAVAVMSAVKPHGHRVPLVVDGDGARR---FQAAFTLYGCRI- 179
Query: 171 DGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
GE G +KM + + G L EA GL++ LA +
Sbjct: 180 ----EVLDGEVGGAALLKMCRSAVLKGLEALFLEAL-AAAEKMGLADRVLASL 227
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 3e-12
Identities = 34/231 (14%), Positives = 72/231 (31%), Gaps = 34/231 (14%)
Query: 4 SALSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKV---DETLDRAHREGQLPLTG 59
S ++ I G Q++A + + ++ Y+ + RA G PL
Sbjct: 22 SMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLD- 80
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT----- 114
++ V++ + G+ A+ + H+S ID LN+
Sbjct: 81 -------DVAGIACADVVLSLVVGAATKAVAASAAPHLSDEAVFID------LNSVGPDT 127
Query: 115 ERRIHE-ASQKGLLYLGMGVSGGEEGARHG-PSLMPGGSFEAYNNIRDILQKVAAQVDDG 172
+ + ++ V P L+ G + + L + +
Sbjct: 128 KALAAGAIATGKGSFVEGAVMARVPPYAEKVPILVAGRRAVE---VAERLNALGMNL--- 181
Query: 173 PCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
G + +KM+ + + G L+ EA G++ L +
Sbjct: 182 --EAVGETPGQASSLKMIRSVMIKGVEALLIEAL-SSAERAGVTERILDSV 229
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 4e-07
Identities = 33/223 (14%), Positives = 58/223 (26%), Gaps = 38/223 (17%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR--- 64
R+G G + Q LA + +G + S R T
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVG-------VTETSEEDV 54
Query: 65 ---DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEA 121
V+S P + + + I ++SP T R
Sbjct: 55 YSCPVVISAVTPGVALGAARRAGRHVRGIYVDINNISPE-------------TVRMASSL 101
Query: 122 SQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIG-E 180
+ ++ + G ++ G + G + G E
Sbjct: 102 -IEKGGFVDAAIMGSVRRKGADIRIIASGRDAE---------EFMKLNRYGLNIEVRGRE 151
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
G + +KM+ + G L+ E H GL L +
Sbjct: 152 PGDASAIKMLRSSYTKGVSALLWETL-TAAHRLGLEEDVLEML 193
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 5e-07
Identities = 73/540 (13%), Positives = 149/540 (27%), Gaps = 177/540 (32%)
Query: 1 MEASALSRIGLAGLAVMG-QNLALNVA-----EKGFPISVY-----------------NR 37
+E + + G+ G +AL+V + ++ +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 38 TTSKVDETL-DRAHREGQLPLTGH---YTPRDFVLSIQRPRSVIIL--VKAGSPVDQTIA 91
++D R+ + L H R + S +++L V+ +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-----NAKAW 259
Query: 92 ALSEHMSPGDCII-----DGGNEWYLNTERRIH-----------EASQKGLL--YLGMGV 133
+ C I +L+ H K LL YL
Sbjct: 260 ---NAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 134 SG-GEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN 192
E P L +A + DG T+ N+ + +
Sbjct: 316 QDLPREVLTTNPRR---------------LSIIAESIRDGLA-TW------DNWKHVNCD 353
Query: 193 GIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFL--VEITADIFKV---- 246
+ +I + +VL+ AE ++FD L F I + +
Sbjct: 354 KLT----TIIESSLNVLE------PAEYRKMFD-----RLSVFPPSAHIPTILLSLIWFD 398
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
+ +V+K+ + ++ +Q E +++ P S+ L+ E
Sbjct: 399 VIKSDVMVVVNKLHKYSLVE-------KQPKESTISIP----SIYLELKVKLENEYALHR 447
Query: 307 KVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSY----------AQGMNLLRSK 356
++ + + + +D Y S+ + M L R
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPY---LDQ-----Y---FYSHIGHHLKNIEHPERMTLFRM- 495
Query: 357 SNEKGWNLNFGEL-ARI------WKGGCIIRAVFLD-RIKKAY--QRNPNLASLVVD--- 403
L+F L +I W I + K Y +P LV
Sbjct: 496 -----VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 404 --PEFAREMVQRQAAWRRVVGLAISA---GISTPGMCASLSYFDTYRRARLPANLVQAQR 458
P+ ++ + + ++ +A+ A I + + ++ Q QR
Sbjct: 551 FLPKIEENLI--CSKYTDLLRIALMAEDEAI----------FEEAHK---------QVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 5e-06
Identities = 57/441 (12%), Positives = 129/441 (29%), Gaps = 147/441 (33%)
Query: 156 NNIRDILQKV--AAQVDD----GPCVTYI----------GEGGSGNFVKMVHN------- 192
+++D+ + + ++D V+ E FV+ V
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 193 ---GIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDE 249
E +++ Y ++ L N ++F ++N L+ +L ++ + +++
Sbjct: 96 SPIKTEQRQPSMMTRMY--IEQRDRLYND--NQVFAKYNVSRLQPYL-KLRQALLELRPA 150
Query: 250 YGEGELVDKILDKTGMKGTGKWTVQQAAE-----------------LSVAAPTIAASL-- 290
+ L+D G+ G+GK V A + L++ ++
Sbjct: 151 --KNVLID------GVLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 291 ---------DCRYLSG----------LKEEREKAAKVLKEAGLK------DEVQNVGVHV 325
D + S + + + ++LK + VQN
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN----- 255
Query: 326 DKKRLID--DVR-QALYASKICSYAQGMNLLRSK---SNEKGWNLNFGELARIWKGGCII 379
+ + ++ + L ++ ++ + + L E+ +
Sbjct: 256 --AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL------ 307
Query: 380 RAVFLD-RIKK----AYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGM 434
+LD R + NP S++ E R+ + W+ V ++ I
Sbjct: 308 -LKYLDCRPQDLPREVLTTNPRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIE---- 360
Query: 435 CASLSYFDTYRRARLPANLVQAQRDLF--------GAHTYERIDRPGSFHTEWTKLPARL 486
+SL+ + PA + L I W +
Sbjct: 361 -SSLNVLE-------PAEYRKMFDRLSVFPPSAHIPTILLSLI---------WFDVIKSD 403
Query: 487 VPVLMQSS------NKWPTPS 501
V V++ K P S
Sbjct: 404 VMVVVNKLHKYSLVEKQPKES 424
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 505 | |||
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 100.0 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 100.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 100.0 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 100.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 100.0 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 100.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 100.0 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 100.0 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 100.0 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 100.0 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 100.0 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 100.0 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.97 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.97 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.97 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.97 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.95 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.95 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.94 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.94 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.93 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.93 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.92 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.92 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.91 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.91 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.91 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.89 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.88 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.87 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.87 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.85 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.84 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.83 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.83 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.82 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.82 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.82 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.82 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.81 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.81 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.81 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.81 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.79 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.78 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.77 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.77 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.77 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.77 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.76 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.75 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.74 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.72 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.72 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.7 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.7 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.69 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.69 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.67 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.67 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.67 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.66 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.48 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.66 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.65 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.64 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.64 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.63 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.62 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.62 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.62 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.61 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.57 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.52 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.5 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.47 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.47 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.46 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.4 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.38 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 99.34 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.29 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.26 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.26 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.25 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.24 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 99.23 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.22 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.2 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.18 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.17 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.17 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.16 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.15 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.15 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.15 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.14 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.14 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.12 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.12 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.12 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.11 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 99.11 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.1 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.1 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.1 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.09 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.09 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.06 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.04 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 99.03 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.01 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 99.01 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.0 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 98.99 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.95 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.95 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.93 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.91 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.9 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.88 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.86 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.84 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.83 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.79 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.74 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.71 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.71 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.7 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.67 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.67 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.66 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.65 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.64 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.62 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.58 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.58 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.58 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.57 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.56 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.55 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.55 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.53 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.52 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.51 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.49 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.49 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.49 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.45 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.45 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.45 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.44 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.43 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.42 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.42 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.42 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.42 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.41 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.41 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.4 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.39 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 98.38 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.37 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.36 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.36 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.36 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.35 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.35 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.34 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 98.34 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 98.33 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.33 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.32 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.3 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.3 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.29 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.28 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 98.26 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.23 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.23 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.23 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.22 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.2 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.2 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.2 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.19 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.17 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.17 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 98.15 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.15 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.14 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.14 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 98.14 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.13 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.12 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.11 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.11 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 98.1 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 98.1 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.09 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 98.09 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.09 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 98.07 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 98.07 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.07 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.05 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.05 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 98.03 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.02 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 98.02 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 98.02 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 98.01 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.01 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.97 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.97 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.97 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 97.96 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 97.96 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.95 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.95 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.94 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.93 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.93 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.93 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.93 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.93 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.92 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.92 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.89 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.88 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.88 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.88 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.87 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.87 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.86 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.85 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.85 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.85 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.79 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.79 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.79 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.78 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.77 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.76 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.72 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.71 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.7 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 97.69 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.67 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.66 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.65 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.64 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.63 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 97.63 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.63 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.61 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.6 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.6 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.59 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.57 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 97.57 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.55 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.54 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 97.54 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.54 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.54 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 97.54 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.53 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.51 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.46 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.44 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.44 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.43 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.41 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.37 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.36 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.36 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.34 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.33 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.33 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.32 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 97.32 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.31 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.3 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 97.29 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 97.28 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.27 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.26 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 97.2 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.18 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.18 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 97.16 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.14 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.08 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.05 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.96 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 96.94 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 96.93 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.88 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.87 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.85 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.83 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.82 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 96.81 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.8 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.79 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.79 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.77 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 96.76 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.76 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.74 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.73 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.71 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.69 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.66 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.63 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.59 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.59 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.57 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.53 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.52 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.52 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.43 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.39 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.39 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.39 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 96.37 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 96.37 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.36 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.28 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 96.25 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.22 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 96.21 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 96.2 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.2 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.2 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.19 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.15 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 96.14 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.13 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 96.11 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 96.1 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.08 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.07 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.02 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.02 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 95.97 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 95.95 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 95.94 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 95.93 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 95.91 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.9 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 95.9 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 95.89 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 95.88 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.87 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 95.86 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.86 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 95.84 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 95.79 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 95.79 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 95.79 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 95.78 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 95.78 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 95.73 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 95.73 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 95.73 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.67 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 95.66 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 95.66 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 95.65 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 95.65 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 95.62 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 95.61 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 95.59 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 95.57 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 95.54 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 95.52 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 95.51 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 95.51 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 95.51 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 95.5 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.47 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.46 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 95.44 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 95.43 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.41 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 95.4 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 95.38 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 95.38 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 95.35 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 95.33 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 95.31 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 95.3 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 95.28 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 95.27 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 95.27 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 95.25 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.25 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.25 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 95.25 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 95.24 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 95.23 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 95.19 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 95.19 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 95.18 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 95.18 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 95.17 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 95.13 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 95.12 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 95.12 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 95.06 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.05 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 95.05 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.04 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 95.02 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 94.96 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 94.94 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 94.94 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 94.93 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 94.91 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 94.91 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 94.88 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 94.87 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 94.87 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 94.86 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 94.85 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 94.85 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 94.84 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 94.83 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 94.8 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 94.79 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 94.78 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 94.78 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 94.76 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 94.73 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 94.72 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.71 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 94.71 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 94.7 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 94.68 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 94.68 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.67 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 94.66 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 94.65 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 94.65 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 94.64 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 94.63 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 94.63 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 94.61 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 94.59 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 94.58 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 94.54 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 94.54 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 94.53 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 94.53 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 94.5 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 94.47 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 94.45 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 94.45 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 94.45 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 94.45 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 94.42 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 94.42 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 94.41 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 94.41 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 94.41 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.38 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 94.36 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 94.36 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 94.35 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 94.33 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 94.33 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 94.31 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.29 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 94.28 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 94.27 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 94.26 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 94.26 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 94.26 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 94.25 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 94.24 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.22 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 94.22 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 94.2 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 94.18 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 94.18 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 94.17 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 94.17 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 94.17 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 94.15 |
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-116 Score=931.50 Aligned_cols=477 Identities=49% Similarity=0.844 Sum_probs=439.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|+|||||+|.||.+||++|+++||+|++|||++++++.+.+.+... .++..+.+++++++.|+.+|+||+|||++.+
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g--~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~ 81 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKG--TKVVGAQSLKEMVSKLKKPRRIILLVKAGQA 81 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTT--SSCEECSSHHHHHHTBCSSCEEEECSCSSHH
T ss_pred CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCC--CceeccCCHHHHHhhccCCCEEEEecCChHH
Confidence 46899999999999999999999999999999999999988764321 1356789999999988889999999999889
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHH
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~i 165 (505)
++++++++.+.+++|++|||+||+.|.++.++.+.+.++|++|+++||+||+++++.|+++|+||+++++++++|+|+.+
T Consensus 82 v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~~im~GG~~ea~~~v~pll~~i 161 (484)
T 4gwg_A 82 VDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGI 161 (484)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCCeeecCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccc-CCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHH-hCCCCHHHHHHHHHHhccCCcchhHHhhhhhh
Q 010637 166 AAQV-DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH-VGGLSNAELAEIFDEWNKGELESFLVEITADI 243 (505)
Q Consensus 166 ga~~-~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~-~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~i 243 (505)
++++ ++++|+.|+|+.|+||++||+||++++++|++++|++.++++ .| ++++++.++|..|+.|.++||+++++.++
T Consensus 162 g~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~G-ld~~~l~~v~~~w~~G~~~S~l~e~~~~~ 240 (484)
T 4gwg_A 162 AAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLG-MAQDEMAQAFEDWNKTELDSFLIEITANI 240 (484)
T ss_dssp SCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHTTTTTCBHHHHHHHHH
T ss_pred cCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHcCCCccchHHHHHHHH
Confidence 9988 678899999999999999999999999999999999999999 77 99999999999999999999999999999
Q ss_pred ccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCccccccccc
Q 010637 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGV 323 (505)
Q Consensus 244 l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~ 323 (505)
+..+| +.+++++|.|+|.++|||||+|++++|.++|||+|+|++||++|++|++|++|..+++.+++|... .+
T Consensus 241 l~~~D-~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S~~k~~r~~a~~~l~~~~~~------~~ 313 (484)
T 4gwg_A 241 LKFQD-TDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKF------QF 313 (484)
T ss_dssp HHCBC-TTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHTTCCCC--C------CC
T ss_pred HhcCC-ccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHhhchHHHHHHHhhcCCCCcc------cc
Confidence 98765 456799999999999999999999999999999999999999999999999999999999877421 23
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCccc
Q 010637 324 HVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVD 403 (505)
Q Consensus 324 ~~~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~ 403 (505)
..++.+|+++|||||||++|++|+|||+||+++|++|+|+||+.+|++|||+||||||+||++|.++|+++|+++|||+|
T Consensus 314 ~~~~~~~~~~~~~al~~~~i~~yaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~ll~~ 393 (484)
T 4gwg_A 314 DGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLD 393 (484)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSTTCTTCBHHHHHHHHHHHHCTTCSCGGGS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHccCceeHHHHHHHHHHHHHhCCCchhhhcC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCC-ccccccCCC
Q 010637 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPG-SFHTEWTKL 482 (505)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~-~~h~~w~~~ 482 (505)
|+|.+.+++.+++||+||..|++.|||+|++|+||+|||+||++++|+|||||||||||+|||||+|++| +|||+|++.
T Consensus 394 ~~f~~~~~~~~~~~r~vv~~a~~~gip~P~~s~al~y~~~~r~~~lpanliqaqRd~FGaH~~~r~d~~g~~~h~~w~~~ 473 (484)
T 4gwg_A 394 DFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGH 473 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHCCCEEETTEEEEEECCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhCCcceEecCCCCCccccCcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 589999876
Q ss_pred CCCccchhhc
Q 010637 483 PARLVPVLMQ 492 (505)
Q Consensus 483 ~~~~~~~~~~ 492 (505)
+.+.+++.|+
T Consensus 474 ~~~~~~~~~~ 483 (484)
T 4gwg_A 474 GGTVSSSSYN 483 (484)
T ss_dssp ----------
T ss_pred CCCccccccc
Confidence 6666666553
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-106 Score=866.13 Aligned_cols=478 Identities=48% Similarity=0.846 Sum_probs=436.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH-hhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-RAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~-~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|..+|||||+|.||.+||.+|+++||+|++|||++++++.+.+ ..... +++.+.+++++++.|+++|+||+|||++
T Consensus 9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~---gi~~~~s~~e~v~~l~~aDvVil~Vp~~ 85 (497)
T 2p4q_A 9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGK---SIIGATSIEDFISKLKRPRKVMLLVKAG 85 (497)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTS---SEECCSSHHHHHHTSCSSCEEEECCCSS
T ss_pred CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCC---CeEEeCCHHHHHhcCCCCCEEEEEcCCh
Confidence 5568999999999999999999999999999999999999886 31101 4778899999999888899999999998
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHH
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQ 163 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~ 163 (505)
.+++++++++.+.+++|++|||+||+.+.++.++.+.+.++|++|+++||+|+++++..|+++|+||+++++++++++|+
T Consensus 86 ~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~~im~gg~~e~~~~v~~ll~ 165 (497)
T 2p4q_A 86 APVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQ 165 (497)
T ss_dssp HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCCeEEecCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHH-hCCCCHHHHHHHHHHhccCCcchhHHhhhhh
Q 010637 164 KVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH-VGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (505)
Q Consensus 164 ~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~-~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~ 242 (505)
.++.+.++++|+.++|+.|+|+++||++|+++++++++++|++.++++ .| ++++++.+++..|+.|.+.||+++++.+
T Consensus 166 ~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lG-l~~~~~~~~~~~w~~g~~~S~l~~~~~~ 244 (497)
T 2p4q_A 166 SISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGG-FTDKEISDVFAKWNNGVLDSFLVEITRD 244 (497)
T ss_dssp HHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTTTTCBHHHHHHHH
T ss_pred HhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 999654455779999999999999999999999999999999999999 58 9999999999999999999999999998
Q ss_pred hccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccc
Q 010637 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVG 322 (505)
Q Consensus 243 il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~ 322 (505)
++.++ +|++.+.++.++|.++|||||+|+++.|.++|+|+|++.++|++|++|.++++|..+++.+++|.... .
T Consensus 245 ~l~~~-d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~av~ar~~s~~k~~r~~~~~~~~gp~~~~-----~ 318 (497)
T 2p4q_A 245 ILKFD-DVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKNERIRASKVLPGPEVPK-----D 318 (497)
T ss_dssp HHTCB-CTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCT-----T
T ss_pred HHhcC-CCCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHHHHHHHhhcchhhHHHHhhhcCCCCccc-----c
Confidence 87764 46667999999999999999999999999999999999999999999999999999999998874200 2
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcc
Q 010637 323 VHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVV 402 (505)
Q Consensus 323 ~~~~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~ 402 (505)
+..+++||+|||||||||++|++|+|||+||+++|++|+|+||+.+|+++||+||||||+||+.|.++|+++|+++|||+
T Consensus 319 ~~~~~~~~~~~v~~al~~~~i~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~~ 398 (497)
T 2p4q_A 319 AVKDREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLLF 398 (497)
T ss_dssp SCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSSSTTCBHHHHHHHHHHHHCTTCSCGGG
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhhhc
Confidence 23468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCcccccc--------CCCCc
Q 010637 403 DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERI--------DRPGS 474 (505)
Q Consensus 403 ~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~--------d~~~~ 474 (505)
|++|.+.+++..++|||||..|++.|||+|++++||+|||+||++++|+|||||||||||+|||+|+ |++|.
T Consensus 399 ~~~f~~~~~~~~~~~r~~v~~a~~~gvp~P~~s~aL~~~~~~~~~~~~a~liqa~Rd~FG~H~~~r~~~~~~~~~~~~~~ 478 (497)
T 2p4q_A 399 NKFFADAVTKAQSGWRKSIALATTYGIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDKD 478 (497)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHSCCCBCCCGGGCCSSSCTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhHHHHHHHHhcCCcceeeccccccccCCCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cccccCCCCCCccchhhc
Q 010637 475 FHTEWTKLPARLVPVLMQ 492 (505)
Q Consensus 475 ~h~~w~~~~~~~~~~~~~ 492 (505)
||++|++.+.+++.+.|+
T Consensus 479 ~h~~w~~~~~~~~~~~~~ 496 (497)
T 2p4q_A 479 IHINWTGHGGNVSSSTYQ 496 (497)
T ss_dssp BCCCCC------------
T ss_pred eecccCCCCCcccccccC
Confidence 999998766666666554
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-105 Score=851.81 Aligned_cols=464 Identities=50% Similarity=0.858 Sum_probs=435.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++|||||+|.||.+||.+|+++||+|++|||++++++++.+..... +++.+.+++++++.++++|+||+|||++.+
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~---gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~ 91 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGK---KLVPYYTVKEFVESLETPRRILLMVKAGAG 91 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTS---CEEECSSHHHHHHTBCSSCEEEECSCSSSH
T ss_pred CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCC---CeEEeCCHHHHHhCCCCCCEEEEECCCHHH
Confidence 35899999999999999999999999999999999999887752111 377889999999877789999999999878
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHH
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~i 165 (505)
++++++++.+.+++|++|||++|+.+.++.++.+.+.++|++|+++|++||+.+++.|+++|+||++++++.++++|+.+
T Consensus 92 v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~~ 171 (480)
T 2zyd_A 92 TDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKI 171 (480)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCCeEEecCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred hccc-CCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHH-hCCCCHHHHHHHHHHhccCCcchhHHhhhhhh
Q 010637 166 AAQV-DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH-VGGLSNAELAEIFDEWNKGELESFLVEITADI 243 (505)
Q Consensus 166 ga~~-~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~-~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~i 243 (505)
+.+. ++++|+.++|+.|+|+++||++|+++++++++++|++.++++ .| ++++++.+++..|+.|.+.|++++++.++
T Consensus 172 g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lG-l~~~~~~~l~~~w~~g~~~s~l~~~~~~~ 250 (480)
T 2zyd_A 172 AAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLN-LTNEELAQTFTEWNNGELSSYLIDITKDI 250 (480)
T ss_dssp SCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTTCBHHHHHHHHH
T ss_pred hccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 9764 567889999999999999999999999999999999999999 68 99999999999999999999999999998
Q ss_pred ccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCccccccccc
Q 010637 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGV 323 (505)
Q Consensus 244 l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~ 323 (505)
++.+ ++++++.++.++|.++|||||+|+.+.|.++|+|+|++.+++++|++|..+++|..+++.+++|.. .+
T Consensus 251 l~~~-d~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~av~ar~~s~~k~~R~~~~~~~~g~~~-------~~ 322 (480)
T 2zyd_A 251 FTKK-DEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLSGPQA-------QP 322 (480)
T ss_dssp HHCB-CTTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHHHHHHHHHTCHHHHHHHHTTCCCCCC-------CC
T ss_pred HhcC-CCCCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHHHHHHhhhcchhhhHHhhcccCCCCC-------CC
Confidence 8764 466679999999989999999999999999999999999999999999999999999999988752 22
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCccc
Q 010637 324 HVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVD 403 (505)
Q Consensus 324 ~~~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~ 403 (505)
..+++||+|||||||||++|++|+|||+||+++|++|+|+||+.+|+++||+||||||+||+.|.++|+++|+++|||+|
T Consensus 323 ~~~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~~~ 402 (480)
T 2zyd_A 323 AGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDACAENPQIANLLLA 402 (480)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSSTTCBTHHHHHHHHHHHCTTCSCGGGS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCChHhhhcC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCCccccccCC
Q 010637 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481 (505)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~~~h~~w~~ 481 (505)
|+|.+.+++..++|||||..|++.|||+|++++||+|||+||++++|+|||||||||||+|||+|+|++|.||++|++
T Consensus 403 ~~f~~~~~~~~~~~r~~v~~a~~~gvp~p~~s~al~~~~~~~~~~~~~~l~qa~Rd~FG~H~~~r~~~~~~~h~~w~~ 480 (480)
T 2zyd_A 403 PYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD 480 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHHCCCBCBSSSCSCBCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhhHHHHHHHhcCCCcceecCCCCcccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999963
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-103 Score=840.79 Aligned_cols=463 Identities=50% Similarity=0.870 Sum_probs=433.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||.+||.+|+++|++|.+|||++++++.+.+..... ++..+.+++++++.++++|+||+|||++.++
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~---gi~~~~s~~e~v~~l~~aDvVilavp~~~~v 82 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDK---NLVFTKTLEEFVGSLEKPRRIMLMVQAGAAT 82 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTS---CEEECSSHHHHHHTBCSSCEEEECCCTTHHH
T ss_pred CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCC---CeEEeCCHHHHHhhccCCCEEEEEccCchHH
Confidence 6899999999999999999999999999999999999887753111 3678889999998777799999999998889
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHHh
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~ig 166 (505)
+.+++++.+.+++|++|||++|+.+.++.++.+.+.++|++|+++|++|+++.+..|+++|+||++++++.++++|+.++
T Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~~g 162 (474)
T 2iz1_A 83 DATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIA 162 (474)
T ss_dssp HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCCCEEEEECHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCCeEEecCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998888888888999999999999999999998899999999999999999999
Q ss_pred ccc--CCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHH-hCCCCHHHHHHHHHHhccCCcchhHHhhhhhh
Q 010637 167 AQV--DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH-VGGLSNAELAEIFDEWNKGELESFLVEITADI 243 (505)
Q Consensus 167 a~~--~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~-~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~i 243 (505)
.+. ++++|+.++|+.|+|+++||+||+++++++++++|++.++++ .| ++++++.+++..|+.|.+.||+++++.++
T Consensus 163 ~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~G-l~~~~~~~l~~~w~~g~~~s~l~~~~~~~ 241 (474)
T 2iz1_A 163 AKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILG-LSNAEIQAIFEEWNEGELDSYLIEITKEV 241 (474)
T ss_dssp CBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHTTTTTCBHHHHHHHHH
T ss_pred cccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCccccHHHhhhhH
Confidence 774 567889999999999999999999999999999999999999 68 99999999999999999999999999998
Q ss_pred ccccccCCCc-hhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccc
Q 010637 244 FKVKDEYGEG-ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVG 322 (505)
Q Consensus 244 l~~~~~~~~~-~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~ 322 (505)
+..+| +.++ +.++.++|.++|||||+|+++.|.++|+|+|++.+++++|++|..|++|..+++.+++|.. .
T Consensus 242 l~~~d-~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~av~ar~~s~~k~~r~~~~~~~~g~~~-------~ 313 (474)
T 2iz1_A 242 LKRKD-DEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPAL-------D 313 (474)
T ss_dssp TTCBC-SSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCC-------C
T ss_pred hhcCC-CCCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHHHHHHHhhhhhhhhHHhhhccCCCCC-------c
Confidence 76544 5455 9999999999999999999999999999999999999999999999999999999988752 2
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcc
Q 010637 323 VHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVV 402 (505)
Q Consensus 323 ~~~~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~ 402 (505)
+..+++||+|||||||||++|++|+|||+||+++|++|+|+||+.+|+++||+||||||+||+.|.++|+++|+++|||+
T Consensus 314 ~~~~~~~~~~~v~~al~~~~~~~yaqGf~ll~~a~~~~~~~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l~~l~~ 393 (474)
T 2iz1_A 314 FSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLL 393 (474)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSCTTCBTTHHHHHHHHHHCTTCCCGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHhcCCChhhhhc
Confidence 23478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCCccccccCC
Q 010637 403 DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481 (505)
Q Consensus 403 ~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~~~h~~w~~ 481 (505)
||+|.+.+++.+++|||||.+|++.|||+|++++||+|||+||++++|+|||||||||||+|||+|+|++|.|||+|++
T Consensus 394 ~~~~~~~~~~~~~~~r~~v~~a~~~~~p~p~~s~al~~~~~~~~~~~~~~l~qa~rd~fg~h~~~r~~~~~~~h~~w~~ 472 (474)
T 2iz1_A 394 DDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWYT 472 (474)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHHCCCBCBSSSSSCBCCCCC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhhHHHHHHHhcCCccceecCCCCeeeccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999975
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-103 Score=838.28 Aligned_cols=475 Identities=50% Similarity=0.847 Sum_probs=435.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH-hhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-RAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~-~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+|||||+|.||.+||.+|+++||+|.+|||++++++.+.+ ..... ++..+.+++++++.++.+|+||+|||++..
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~---gi~~~~~~~e~v~~l~~aDvVilaVp~~~~ 79 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGT---KVLGAHSLEEMVSKLKKPRRIILLVKAGQA 79 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTS---SCEECSSHHHHHHHBCSSCEEEECSCTTHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCC---CeEEeCCHHHHHhhccCCCEEEEeCCChHH
Confidence 58999999999999999999999999999999999998876 21101 367889999998766669999999999878
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHH
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~i 165 (505)
++.+++++.+.+.+|++|||++|+.+.++.++.+.+.+.|++|+++|++|+++++..|+++|+||++++++.++++|+.+
T Consensus 80 v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~~i~~gg~~e~~~~v~~ll~~~ 159 (482)
T 2pgd_A 80 VDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGI 159 (482)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCCeEEeCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888888888899999999999999999999889999999999999999999
Q ss_pred hccc-CCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHh-CCCCHHHHHHHHHHhccCCcchhHHhhhhhh
Q 010637 166 AAQV-DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV-GGLSNAELAEIFDEWNKGELESFLVEITADI 243 (505)
Q Consensus 166 ga~~-~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~-g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~i 243 (505)
+.++ ++++|+.++|+.|.|+++||++|+++++++++++|++.++++. | ++++++.+++..|+.+.+.|++.+++.++
T Consensus 160 g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G-~~~~~~~~~~~~w~~g~~~S~l~~~~~~~ 238 (482)
T 2pgd_A 160 AAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLG-LGHKEMAKAFEEWNKTELDSFLIEITASI 238 (482)
T ss_dssp SCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHTTTTTCBHHHHHHHHH
T ss_pred hhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cCHHHHHHHHHHhcCCCcCchHHHHHhHH
Confidence 9876 5567889999999999999999999999999999999999999 8 99999999999999999999999999988
Q ss_pred ccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCccccccccc
Q 010637 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGV 323 (505)
Q Consensus 244 l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~ 323 (505)
+..+ ++++++.++.+++.++|||||+|+++.|+++|+|+|++.++|++|+.|.+|++|..+++.+++|... .+
T Consensus 239 l~~~-d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s~~k~~r~~~~~~~~g~~~~------~~ 311 (482)
T 2pgd_A 239 LKFQ-DADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNI------PF 311 (482)
T ss_dssp HHCB-CTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC------CC
T ss_pred hhcc-CCCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhhhHHHHHhhhcCCCCcc------cc
Confidence 7664 4677799999999999999999999999999999999998999999999999999999999887521 22
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCccc
Q 010637 324 HVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVD 403 (505)
Q Consensus 324 ~~~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~ 403 (505)
..+++||+|||||||||++|++|+|||+||+++|++|+|+||+.+|+++||+||||||+||+.|.++|+++|+|+|||+|
T Consensus 312 ~~~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l~~l~~~ 391 (482)
T 2pgd_A 312 EGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLD 391 (482)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGS
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCChhhhhcC
Confidence 35779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCC-ccccccCCC
Q 010637 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPG-SFHTEWTKL 482 (505)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~-~~h~~w~~~ 482 (505)
+.|.+.+++.+++|||||..|++.|||+|++++||+|||+||++++|+|||||||||||+|||+|+|++| .||++|++.
T Consensus 392 ~~~~~~~~~~~~~~r~~v~~a~~~g~p~p~~s~al~~~~~~~~~~~~~~l~qa~rd~fG~h~~~r~~~~~~~~h~~w~~~ 471 (482)
T 2pgd_A 392 DFFKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGH 471 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCSSCTHHHHHHHHHHHHCCCBCCSSSTTCCBCCCCSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCcchhHHHHHHhhcCCceeeecCCCCCceecccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999876
Q ss_pred CCCccchhhc
Q 010637 483 PARLVPVLMQ 492 (505)
Q Consensus 483 ~~~~~~~~~~ 492 (505)
+.+++.+.|+
T Consensus 472 ~~~~~~~~~~ 481 (482)
T 2pgd_A 472 GGSVSSSSYN 481 (482)
T ss_dssp CC--------
T ss_pred CCccccccCC
Confidence 6666666553
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-100 Score=817.17 Aligned_cols=462 Identities=36% Similarity=0.651 Sum_probs=429.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc----ccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH----REGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~----~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|||||+|.||.+||.+|+++||+|.+|||++++++.+.+... .. ++..+.+++++++.++++|+||+|||+
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~---~i~~~~~~~e~v~~l~~aDvVilaVp~ 78 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAG---NLKAFETMEAFAASLKKPRKALILVQA 78 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGG---GEEECSCHHHHHHHBCSSCEEEECCCC
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCC---CeEEECCHHHHHhcccCCCEEEEecCC
Confidence 58999999999999999999999999999999999998887521 11 267788999999877779999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHH
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll 162 (505)
+..++++++++.+.+.+|++|||++|+.+.++.++.+.+.+.|++|+++|++|++++++.|+++|+||++++++.++++|
T Consensus 79 ~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll 158 (478)
T 1pgj_A 79 GAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIV 158 (478)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEECHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCCeEeccCCHHHHHHHHHHH
Confidence 87899999999999999999999999999999888888888899999999999999999999889999999999999999
Q ss_pred HHHhccc-CCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhc-cCCcchhHHhhh
Q 010637 163 QKVAAQV-DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWN-KGELESFLVEIT 240 (505)
Q Consensus 163 ~~iga~~-~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~-~g~~~s~l~~~~ 240 (505)
+.++.+. ++++|+.++|+.|+|+++|+++|+++++++++++|++.++++.| ++++++.+++..|+ .|.+.|++.+++
T Consensus 159 ~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G-~~~~~~~~l~~~w~~~g~~~s~l~~~~ 237 (478)
T 1pgj_A 159 EAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDIS 237 (478)
T ss_dssp HHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSTTCBHHHHHH
T ss_pred HHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhccCCCcCchHHHhh
Confidence 9999764 45678999999999999999999999999999999999999888 99999999999999 899999999999
Q ss_pred hhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCC-ccccc
Q 010637 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGL-KDEVQ 319 (505)
Q Consensus 241 ~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~-~~~~~ 319 (505)
.+++..+| +.+.+.++.++|.++|||||+|+++.|.++|+|+|++.++|++|++|..+++|..+++.+++|.. .
T Consensus 238 ~~~l~~~d-~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~av~~r~ls~~~~~r~~~~~~l~~~~~~~---- 312 (478)
T 1pgj_A 238 IAAARAKD-KDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGITQSP---- 312 (478)
T ss_dssp HHHHHCBC-TTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHSTTTTCCC----
T ss_pred chhhhcCC-CCChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCHHHHHHHhcCCCCccc----
Confidence 98886544 53348999999999999999999999999999999999999999999999999999999987742 1
Q ss_pred ccccc-ccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCC
Q 010637 320 NVGVH-VDK---KRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNP 395 (505)
Q Consensus 320 ~~~~~-~~~---~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~ 395 (505)
.+. .++ ..|+++||+|+|+++|++|+|||+||+++|++|+|+||+.+|++|||+||||||.||++|.++|+++|
T Consensus 313 --~~~~~~~~~~~~~~~~~~~al~~~~~~~yaqg~~~~~~a~~~~~w~l~~~~~a~~wr~gciir~~~l~~i~~a~~~~~ 390 (478)
T 1pgj_A 313 --GYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNP 390 (478)
T ss_dssp --CCCCSCCSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHHHHHHHCT
T ss_pred --ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCCceeeHHHHHHHHHHHhcCC
Confidence 122 355 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHhhhhHHHHHHHH-HHHcCCChHHHHHHHHHHHhhccCChh-hhHHHHHHhhhcCccccccCCCC
Q 010637 396 NLASLVVDPEFAREMVQRQAAWRRVVGL-AISAGISTPGMCASLSYFDTYRRARLP-ANLVQAQRDLFGAHTYERIDRPG 473 (505)
Q Consensus 396 ~~~~ll~~~~~~~~~~~~~~~~r~~v~~-a~~~gip~p~~saal~y~~~~~~~~~~-a~~iqaqRd~FG~H~~~r~d~~~ 473 (505)
++.||| +.|.+.+++.+++||+||.. |++.|||+|++|+||+|||+||+++|| +|||||||||||+|||||+|++|
T Consensus 391 ~~~~l~--~~~~~~~~~~~~~~r~~v~~~~~~~g~~~p~~~~~l~y~d~~~~~~l~~~~l~qaqrd~fg~h~~~~~~~~~ 468 (478)
T 1pgj_A 391 NISNLM--CAFQTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDG 468 (478)
T ss_dssp TCSCTT--GGGHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHHCCCEEBSSSSS
T ss_pred ChhhHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhccccCCcchhHHHHHHhccCceeeecCCCC
Confidence 999999 89999999999999999999 999999999999999999999999999 99999999999999999999999
Q ss_pred ccccccCC
Q 010637 474 SFHTEWTK 481 (505)
Q Consensus 474 ~~h~~w~~ 481 (505)
.||++|++
T Consensus 469 ~~h~~w~~ 476 (478)
T 1pgj_A 469 RESFQWPE 476 (478)
T ss_dssp EECCCCCC
T ss_pred ceecCCCC
Confidence 99999975
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-53 Score=438.11 Aligned_cols=320 Identities=27% Similarity=0.487 Sum_probs=264.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|+|||||+|.||.+||.+|+++||+|.+|||++++++.+.+.+ +..+.+++++++..+.+|+||+|||++ .
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~e~~~~a~~~DvVi~~vp~~-~ 93 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREG-------IAGARSIEEFCAKLVKPRVVWLMVPAA-V 93 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTT-------CBCCSSHHHHHHHSCSSCEEEECSCGG-G
T ss_pred CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCC-------CEEeCCHHHHHhcCCCCCEEEEeCCHH-H
Confidence 36899999999999999999999999999999999999888653 567889999999844459999999998 8
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHH
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~i 165 (505)
++++++++.+.+++|++|||+||+.|.++.++.+.+.++|++|+++||+||+.+++.|+++|+||+++++++++++|+.+
T Consensus 94 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~~im~GG~~~a~~~~~~ll~~l 173 (358)
T 4e21_A 94 VDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGYCLMIGGEKQAVERLDPVFRTL 173 (358)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCCEEEEESCHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCCeeeecCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCC--------------CceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCC
Q 010637 166 AAQVDDG--------------PCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGE 231 (505)
Q Consensus 166 ga~~~~~--------------~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~ 231 (505)
+++.++. ++++|+|+.|+|+++|+++|.+.++.+++++|++.++++.| +...
T Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~-~~~~------------- 239 (358)
T 4e21_A 174 APGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHAN-AGKE------------- 239 (358)
T ss_dssp SCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CC---------------
T ss_pred ccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccc-------------
Confidence 9653211 37999999999999999999999999999999999999875 2110
Q ss_pred cchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhcc
Q 010637 232 LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKE 311 (505)
Q Consensus 232 ~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~ 311 (505)
.. . . ++ . .. |
T Consensus 240 ------------~~--~-----------~-~~-------------~-~~---~--------------------------- 249 (358)
T 4e21_A 240 ------------GQ--G-----------A-DA-------------E-TA---P--------------------------- 249 (358)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------cc--c-----------c-cc-------------c-cc---c---------------------------
Confidence 00 0 0 00 0 00 1
Q ss_pred CCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHH
Q 010637 312 AGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAY 391 (505)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~ 391 (505)
. +.+++|+|++|+++|+++||+||+|+|+||+.+.++|
T Consensus 250 --~----------------------------------------~~~~~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~~~ 287 (358)
T 4e21_A 250 --L----------------------------------------RNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATAL 287 (358)
T ss_dssp --------------------------------------------CGGGCCCCCCHHHHHHHHTTTSTTCBHHHHHHHHHH
T ss_pred --c----------------------------------------ccchhcccCCCHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 0 0156799999999999999999999999999999999
Q ss_pred hcCCCCCCCcccHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH-HHHhhccCChhh-hHHHHHHhhhcCcccc
Q 010637 392 QRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS-YFDTYRRARLPA-NLVQAQRDLFGAHTYE 467 (505)
Q Consensus 392 ~~~~~~~~ll~~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~-y~~~~~~~~~~a-~~iqaqRd~FG~H~~~ 467 (505)
.++|.+.++. ..+.+ ++++ ||++..|++.|+|+|++++||+ +|++ +.+++++ |++||||||||+|+++
T Consensus 288 ~~~p~~~~~~--~~~~d---~g~~--r~~~~~A~~~gvp~p~~~~al~~~~~s-~~~~~~~~~l~~a~r~~fG~h~~~ 357 (358)
T 4e21_A 288 LDSPDLQEFQ--GRVSD---SGEG--RWTVAAAIDEGVPAHVLSSALYERFSS-RGEDDFANRLLSAMRYEFGGHREK 357 (358)
T ss_dssp HHCTTCTTC----CCCC---CSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHH-TTTTHHHHHHHHHHC---------
T ss_pred hhCCChHHHH--HHHHh---cCcH--HHHHHHHHHcCCChHHHHHHHHHHHHH-CCCcccHHHHHHHHHHhcCCCCCC
Confidence 9988765432 22222 4455 9999999999999999999998 5666 7888885 6999999999999975
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-47 Score=382.31 Aligned_cols=265 Identities=23% Similarity=0.324 Sum_probs=241.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+||||||+|.||.+||+||+++||+|++|||++++++.+.+.+ .+.+.|++|+++. +|+||+|||++.+
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~G-------a~~a~s~~e~~~~---~dvv~~~l~~~~~ 72 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAG-------ASAARSARDAVQG---ADVVISMLPASQH 72 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT-------CEECSSHHHHHTT---CSEEEECCSCHHH
T ss_pred cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcC-------CEEcCCHHHHHhc---CCceeecCCchHH
Confidence 46899999999999999999999999999999999999998864 5789999999998 9999999999999
Q ss_pred HHHHHH---HHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHH
Q 010637 86 VDQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl~---~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~l 161 (505)
+++|+. ++.+.+.+|++|||+||+.|.+++++.+.++++|++|+|+|||||+.+|..|+ ++|+||+++++++++|+
T Consensus 73 v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~ 152 (300)
T 3obb_A 73 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPL 152 (300)
T ss_dssp HHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHHH
Confidence 999984 47788999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhh
Q 010637 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (505)
Q Consensus 162 l~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~ 241 (505)
|+.++ ++++|+|+.|+|+.+|++||.+.++.+++++|++.++++.| +|++.+.+++ +.+...|+.++...
T Consensus 153 l~~~g------~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~G-ld~~~~~~vl---~~~~~~s~~~~~~~ 222 (300)
T 3obb_A 153 FEAMG------RNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANG-LEAKVLAEIM---RRSSGGNWALEVYN 222 (300)
T ss_dssp HHHHE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HTSTTCCHHHHHCC
T ss_pred HHHhC------CCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHH---HhCcccchHHHhhc
Confidence 99999 78999999999999999999999999999999999999999 9999999997 56778889888775
Q ss_pred hhc------cccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 242 DIF------KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 242 ~il------~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
+.. ...++|+++|.++.+.||++ ++.++|.++|+|+|+...+ ..+|.++
T Consensus 223 p~~~~~~~~~~~~~~~~~f~~~l~~KDl~------l~~~~A~~~g~~~p~~~~a-~~~~~~a 277 (300)
T 3obb_A 223 PWPGVMENAPASRDYSGGFMAQLMAKDLG------LAQEAAQASASSTPMGSLA-LSLYRLL 277 (300)
T ss_dssp CSTTTSTTSGGGGTTCSSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHHHHH
T ss_pred cccchhhhccccccCCccchHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 432 11246889999999999996 9999999999999998865 5565544
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=369.54 Aligned_cols=266 Identities=18% Similarity=0.252 Sum_probs=234.9
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 4 ~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.|..||||||+|.||.+||+||+++||+|++|||++++++++.+.+ .+.+.++.|+++. +|+||+|+|++
T Consensus 3 ~Ms~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------~~~~~s~~e~~~~---~dvvi~~l~~~ 72 (297)
T 4gbj_A 3 AMSEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLG-------ATVVENAIDAITP---GGIVFSVLADD 72 (297)
T ss_dssp -CCCEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTT-------CEECSSGGGGCCT---TCEEEECCSSH
T ss_pred CCCCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcC-------CeEeCCHHHHHhc---CCceeeeccch
Confidence 3445899999999999999999999999999999999998887653 6788999999887 99999999998
Q ss_pred chHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHH
Q 010637 84 SPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 84 ~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~l 161 (505)
.++++++ ..+.+.+.++++|||+||+.|.+++++.+.+.++|++|+++||+|++.++..|+ ++|+||+++++++++|+
T Consensus 73 ~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~ 152 (297)
T 4gbj_A 73 AAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPI 152 (297)
T ss_dssp HHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeecccchhHHHHHHHH
Confidence 8888776 668888999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhcccCCCCceEEeCC-CcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhh
Q 010637 162 LQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240 (505)
Q Consensus 162 l~~iga~~~~~~~v~~vG~-~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~ 240 (505)
|+.++ +.++|+|+ .|+|+.+|++||.+.++.+++++|++.++++.| +|++++.+++ +.+.+.||+++.+
T Consensus 153 l~~~g------~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~G-ld~~~~~~~l---~~~~~~s~~~~~~ 222 (297)
T 4gbj_A 153 VENFV------KGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNG-ISRQSIYEML---TSTLFAAPIFQNY 222 (297)
T ss_dssp HHTTC------SEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HTTTTCSHHHHHH
T ss_pred HHHhh------CCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhcccCchhhcc
Confidence 99999 78999985 799999999999999999999999999999999 9999999987 6788899999998
Q ss_pred hhhccccccCCC-chhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 241 ADIFKVKDEYGE-GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 241 ~~il~~~~~~~~-~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
.+.+.. ++|.| +|.++.+.||++ ++.++|+++|+|+|+...+ ..+|..+
T Consensus 223 ~~~~~~-~~~~p~~f~~~l~~KDl~------l~~~~A~~~g~~~p~~~~~-~~~~~~a 272 (297)
T 4gbj_A 223 GKLVAS-NTYEPVAFRFPLGLKDIN------LTLQTASDVNAPMPFADII-RNRFISG 272 (297)
T ss_dssp HHHHHH-TCCCSCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHHH
T ss_pred CccccC-CCCCCccchhHHHHHHHH------HHHHHHHHhCCCChHHHHH-HHHHHHH
Confidence 877665 45765 799999999996 8999999999999988754 5666554
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=316.01 Aligned_cols=261 Identities=18% Similarity=0.210 Sum_probs=233.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++++|||||+|.||..||.+|+++||+|++|||++++++.+.+.+ ++.+++++++++ +|+||+|||++.
T Consensus 14 ~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~----aDvvi~~vp~~~ 82 (296)
T 3qha_A 14 EQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAG-------ATLADSVADVAA----ADLIHITVLDDA 82 (296)
T ss_dssp -CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTT-------CEECSSHHHHTT----SSEEEECCSSHH
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-------CEEcCCHHHHHh----CCEEEEECCChH
Confidence 346899999999999999999999999999999999998887653 677889998876 899999999887
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHHH
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQ 163 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll~ 163 (505)
.++++++++.+.+.++++|||+||+.+.+++++.+.+.++|++|+++|++|+++.+..|+ .+++||+++++++++++|+
T Consensus 83 ~~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~ 162 (296)
T 3qha_A 83 QVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFK 162 (296)
T ss_dssp HHHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999998999999999999999999999 9999999999999999999
Q ss_pred HHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHH------HHHHHHhccCCcchhHH
Q 010637 164 KVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL------AEIFDEWNKGELESFLV 237 (505)
Q Consensus 164 ~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i------~~v~~~~~~g~~~s~l~ 237 (505)
.++ +.++++|+.|.|+.+|+++|.+.++.+++++|++.++++.| ++++++ .+++ +.+.+.|++.
T Consensus 163 ~~g------~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G-~d~~~~~~~~~~~~~i---~~~~~~s~~~ 232 (296)
T 3qha_A 163 HWA------AVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAG-LDLQALGRVVRHTDAL---TGGPGAIMVR 232 (296)
T ss_dssp HHE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHH---HCCGGGGCCC
T ss_pred HHc------CCeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHhhhcchHHHH---hcCcccCHHh
Confidence 999 78999999999999999999999999999999999999999 999999 5555 4577778776
Q ss_pred hhhhhhccccccCCCchhH-----HHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 238 EITADIFKVKDEYGEGELV-----DKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 238 ~~~~~il~~~~~~~~~~~l-----~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
+ ...++. + |.++|.+ +.+.||++ .+.+.|.++|+|+|++..+ ...|..+
T Consensus 233 ~-~~~~~~--~-~~~~f~~~~~~~~~~~KD~~------~~~~~a~~~g~~~p~~~~~-~~~~~~~ 286 (296)
T 3qha_A 233 D-NMKDLE--P-DNFLYQPFLHTRGLGEKDLS------LALALGEAVSVDLPLARLA-YEGLAAG 286 (296)
T ss_dssp S-SCSCCC--T-TSTTHHHHHHHHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHHH
T ss_pred h-chhhhh--c-CCCCCchhhhhhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 6 334443 3 7788999 99999986 8889999999999999864 5555443
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-38 Score=316.24 Aligned_cols=264 Identities=20% Similarity=0.304 Sum_probs=239.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.||+|||||+|.||..||.+|+++||+|++|||++++++.+.+.+ +..+.+++++++. +|+||+|||++.
T Consensus 20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~~~~~~~~~---aDvvi~~vp~~~ 89 (310)
T 3doj_A 20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHG-------ASVCESPAEVIKK---CKYTIAMLSDPC 89 (310)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHH
T ss_pred cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-------CeEcCCHHHHHHh---CCEEEEEcCCHH
Confidence 457999999999999999999999999999999999999887643 5778999999988 999999999987
Q ss_pred hHHHHH---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHH
Q 010637 85 PVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (505)
Q Consensus 85 ~v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ 160 (505)
.+++++ +++.+.+.+|++|||+||+.|..++++.+.+.++|++|+++|++|++..+..|+ .+++||++++++++++
T Consensus 90 ~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ 169 (310)
T 3doj_A 90 AALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIP 169 (310)
T ss_dssp HHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHH
T ss_pred HHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHHHH
Confidence 899998 788889999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhh
Q 010637 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~ 240 (505)
+|+.++ ++++++|+.|.|+.+|+++|.+.++.+++++|++.++++.| ++++++.+++. .+...|++++..
T Consensus 170 ll~~~g------~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~d~~~~~~~~~---~~~~~s~~~~~~ 239 (310)
T 3doj_A 170 AFDVLG------KRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSG-LSSDTLLDILD---LGAMTNPMFKGK 239 (310)
T ss_dssp HHHHHE------EEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHHH---HSTTCCHHHHHH
T ss_pred HHHHhC------CCEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hcccccHHHHHH
Confidence 999999 78999999999999999999999999999999999999999 99999999984 577788888877
Q ss_pred hhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010637 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 241 ~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s 296 (505)
.+.+.. ++|.++|.++.+.||++ .+++.|.++|+|+|++.++ ...|..
T Consensus 240 ~~~~~~-~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 287 (310)
T 3doj_A 240 GPSMNK-SSYPPAFPLKHQQKDMR------LALALGDENAVSMPVAAAA-NEAFKK 287 (310)
T ss_dssp HHHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHH
T ss_pred hhhhhc-CCCCCCccHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 765554 56888999999999986 8999999999999998864 444444
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=316.40 Aligned_cols=262 Identities=21% Similarity=0.293 Sum_probs=238.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|+|||||+|.||..||.+|+++||+|++|||++++++++.+.+ +..+.+++++++. +|+||+|||++..
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~~~~e~~~~---aDvVi~~vp~~~~ 100 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALG-------ATIHEQARAAARD---ADIVVSMLENGAV 100 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTT-------CEEESSHHHHHTT---CSEEEECCSSHHH
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCC-------CEeeCCHHHHHhc---CCEEEEECCCHHH
Confidence 46899999999999999999999999999999999999887653 6778999999887 9999999998878
Q ss_pred HHHHHH--HHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHH
Q 010637 86 VDQTIA--ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 86 v~~vl~--~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll 162 (505)
++.++. ++.+.+.++++|||+||+.|.+++++.+.+.++|++|+++|++|++..+..|+ .+|+||+++++++++++|
T Consensus 101 ~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll 180 (320)
T 4dll_A 101 VQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLL 180 (320)
T ss_dssp HHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHH
Confidence 999987 88888999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhh
Q 010637 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (505)
Q Consensus 163 ~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~ 242 (505)
+.+ . +++++|+.|+|+.+|+++|.+.++.+++++|++.++++.| ++++++.+++ +.+.+.|++++...+
T Consensus 181 ~~~-~------~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~d~~~~~~~~---~~~~~~s~~~~~~~~ 249 (320)
T 4dll_A 181 KVF-G------RATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGG-ADMAKVKEAI---TGGFADSRVLQLHGQ 249 (320)
T ss_dssp HHH-E------EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCHHHHHHHH---TTSTTCBHHHHTHHH
T ss_pred Hhc-C------CEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcccccCHHHHHhhh
Confidence 999 4 5889999999999999999999999999999999999998 9999999997 567788999988876
Q ss_pred hccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010637 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 243 il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s 296 (505)
.+.. ++|.++|.++.+.||+. ++++.|.++|+|+|++.++ ...|..
T Consensus 250 ~~l~-~~~~~gf~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 295 (320)
T 4dll_A 250 RMVE-RDFAPRARLSIQLKDMR------NALATAQEIGFDAPITGLF-EQLYAE 295 (320)
T ss_dssp HHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHH
T ss_pred hhcc-CCCCCcccHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 6554 46889999999999996 8999999999999998864 455444
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=310.05 Aligned_cols=262 Identities=18% Similarity=0.280 Sum_probs=239.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|||||+|.||..||.+|+++||+|++|||++++.+.+.+.+ +..+.+++++++. +|+||+|||++..+
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---aDvvi~~vp~~~~~ 71 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALG-------AERAATPCEVVES---CPVTFAMLADPAAA 71 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEEcCCHHHH
Confidence 6899999999999999999999999999999999999887753 6778999999988 99999999987789
Q ss_pred HHHH---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHH
Q 010637 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 87 ~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll 162 (505)
+.++ +++.+.+.++++|||+||+.+.+++++.+.+.++|++|+++|++|++..+..|+ .+++||+++++++++++|
T Consensus 72 ~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 151 (287)
T 3pef_A 72 EEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGF 151 (287)
T ss_dssp HHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHH
Confidence 9999 889999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhh
Q 010637 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (505)
Q Consensus 163 ~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~ 242 (505)
+.++ .+++++|+.|.|+.+|+++|.+.++.+++++|++.++++.| ++++++.+++. .+.+.|++++...+
T Consensus 152 ~~~g------~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G-~d~~~~~~~~~---~~~~~s~~~~~~~~ 221 (287)
T 3pef_A 152 EKMG------KKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAG-LATDAILDVIG---AGAMANPMFALKGG 221 (287)
T ss_dssp HHHE------EEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---HSTTCCHHHHHHHH
T ss_pred HHhC------CCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hcccccHHHHHHhh
Confidence 9999 78999999999999999999999999999999999999999 99999999984 56678888888776
Q ss_pred hccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010637 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 243 il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s 296 (505)
.+.. ++|.++|.++...||+. ++++.|.++|+|+|++.++ ...|..
T Consensus 222 ~~~~-~~~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 267 (287)
T 3pef_A 222 LIRD-RNFAPAFPLKHMQKDLR------LAVALGDRVGQPLVASAAA-NELFKG 267 (287)
T ss_dssp HHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHHHH
T ss_pred hhhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 6654 46888999999999985 9999999999999998864 444433
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=311.44 Aligned_cols=263 Identities=18% Similarity=0.266 Sum_probs=238.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|++|||||+|.||..||.+|+++||+|++|||++++.+.+.+.+ +..+.+++++++. +|+||+|||++..
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---advvi~~v~~~~~ 70 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALG-------ARQASSPAEVCAA---CDITIAMLADPAA 70 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHT-------CEECSCHHHHHHH---CSEEEECCSSHHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHHc---CCEEEEEcCCHHH
Confidence 36899999999999999999999999999999999999888753 5678899999988 9999999999778
Q ss_pred HHHHH---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHH
Q 010637 86 VDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~l 161 (505)
+++++ +++.+.+.++++|||+||+.+.+++++.+.+.++|++|+++|++|++..+..|+ .+++||+++++++++++
T Consensus 71 ~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 150 (287)
T 3pdu_A 71 AREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPA 150 (287)
T ss_dssp HHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHH
T ss_pred HHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHH
Confidence 99998 788888999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhh
Q 010637 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (505)
Q Consensus 162 l~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~ 241 (505)
|+.++ ++++++|+.|.|+.+|+++|.+.+..+++++|++.++++.| ++++++.+++. .+...|++++...
T Consensus 151 l~~~g------~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~~---~~~~~s~~~~~~~ 220 (287)
T 3pdu_A 151 FAALG------KKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCG-LDGGQLLEVLD---AGAMANPMFKGKG 220 (287)
T ss_dssp HHHHE------EEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---HSTTCCHHHHHHH
T ss_pred HHHhC------CCEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hccccChHHHhhc
Confidence 99999 78999999999999999999999999999999999999999 99999999984 4667888888877
Q ss_pred hhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010637 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 242 ~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s 296 (505)
+.+.. ++|.++|.++...||++ ++++.|+++|+|+|++.++ .+.|..
T Consensus 221 ~~~~~-~~~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 267 (287)
T 3pdu_A 221 QMLLS-GEFPTSFPLKHMQKDLR------LAVELGDRLGQPLHGAATA-NESFKR 267 (287)
T ss_dssp HHHHH-TCCCCSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHHHH
T ss_pred ccccc-CCCCCCCcHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 66654 45788999999999985 8999999999999998864 444443
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=309.93 Aligned_cols=264 Identities=20% Similarity=0.292 Sum_probs=236.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++|+|||||+|.||.+||.+|+++||+|++|||++++++.+.+.+ ... +.+++++++. +|+||+|||++
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~e~~~~---aDvvi~~vp~~ 75 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEG-------ACGAAASAREFAGV---VDALVILVVNA 75 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CSEEESSSTTTTTT---CSEEEECCSSH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcC-------CccccCCHHHHHhc---CCEEEEECCCH
Confidence 357899999999999999999999999999999999999988764 334 7888888876 99999999998
Q ss_pred chHHHHH---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHH
Q 010637 84 SPVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIR 159 (505)
Q Consensus 84 ~~v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~ 159 (505)
..++.++ +++.+.+.++++|||+||+.+..++++.+.+.++|++|+++|++|++..+..|+ .+++||+++++++++
T Consensus 76 ~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~ 155 (303)
T 3g0o_A 76 AQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLK 155 (303)
T ss_dssp HHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHHH
T ss_pred HHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHHH
Confidence 7888888 788889999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhcccCCCCceEEeCC-CcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHh
Q 010637 160 DILQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVE 238 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~vG~-~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~ 238 (505)
++|+.++ ++++++|+ .|+|+.+|+++|.+.+..+++++|++.++++.| ++++++.+++ +.+...|++++
T Consensus 156 ~ll~~~g------~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~d~~~~~~~~---~~~~~~s~~~~ 225 (303)
T 3g0o_A 156 PVLDAVA------SNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAG-IPLDVMYDVV---THAAGNSWMFE 225 (303)
T ss_dssp HHHHHHE------EEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCCHHHH
T ss_pred HHHHHHC------CCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhcccCCHHHH
Confidence 9999999 78999998 899999999999999999999999999999999 9999999997 55777888888
Q ss_pred hhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010637 239 ITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 239 ~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s 296 (505)
...+.+.. ++|.++|.++.+.||+. ++++.|+++|+|+|++.++ ...|..
T Consensus 226 ~~~~~~~~-~~~~~~~~~~~~~kD~~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 275 (303)
T 3g0o_A 226 NRMQHVVD-GDYTPRSAVDIFVKDLG------LVADTAKALRFPLPLASTA-LNMFTS 275 (303)
T ss_dssp HHHHHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHH
T ss_pred hhhHHHhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 77665544 45888899999999986 8999999999999998864 455443
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=296.34 Aligned_cols=262 Identities=14% Similarity=0.134 Sum_probs=226.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++++|||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ +..+.+++++++. +|+||+|||++.
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~---aDvVi~~vp~~~ 77 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAG-------AHLCESVKAALSA---SPATIFVLLDNH 77 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT-------CEECSSHHHHHHH---SSEEEECCSSHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEEeCCHH
Confidence 357899999999999999999999999999999999999988753 5678899999988 999999999987
Q ss_pred hHHHHHH--HHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHH
Q 010637 85 PVDQTIA--ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 85 ~v~~vl~--~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~l 161 (505)
.++.++. .+.+ +.+|++|||+||+.|..++++.+.+.++|++|+++||+|+++.+..+. .+|+||+++++++++++
T Consensus 78 ~~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~l 156 (306)
T 3l6d_A 78 ATHEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRAL 156 (306)
T ss_dssp HHHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHH
T ss_pred HHHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHH
Confidence 7898886 6654 568999999999999999999999999999999999999987776666 89999999999999999
Q ss_pred HHHHhcccCCCCceEEe--CC-CcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHh
Q 010637 162 LQKVAAQVDDGPCVTYI--GE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVE 238 (505)
Q Consensus 162 l~~iga~~~~~~~v~~v--G~-~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~ 238 (505)
|+.++ ..++++ |+ .|+|+.+| .+.++.+++++|++.++++.| +|++++.+++..+.. .+.|++++
T Consensus 157 l~~lg------~~~~~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~~~~~~~-~~~s~~~~ 224 (306)
T 3l6d_A 157 LEGLA------GHTVFLPWDEALAFATVLH----AHAFAAMVTFFEAVGAGDRFG-LPVSKTARLLLETSR-FFVADALE 224 (306)
T ss_dssp HHTTC------SEEEECCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHhc------CCEEEecCCCCccHHHHHH----HHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhhh-hcccHHHH
Confidence 99998 689999 97 79999999 566788999999999999999 999999999854310 15688887
Q ss_pred hhhhhccccccCCCc-hhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 239 ITADIFKVKDEYGEG-ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 239 ~~~~il~~~~~~~~~-~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
...+.+.. ++|+++ |.++.+.||+. ++++.|.++|+|+|++.++ ...|..+
T Consensus 225 ~~~~~~~~-~~~~~~~~~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~a 276 (306)
T 3l6d_A 225 EAVRRLET-QDFKGDQARLDVHADAFA------HIAQSLHAQGVWTPVFDAV-CQVVQRA 276 (306)
T ss_dssp HHHHHHHH-TCCCTTSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHHH
T ss_pred HHHHHHhc-CCCCCCcccHHHHHHHHH------HHHHHHHHcCCCchHHHHH-HHHHHHH
Confidence 77665554 467765 78999999996 9999999999999998864 5555443
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=280.42 Aligned_cols=254 Identities=13% Similarity=0.100 Sum_probs=211.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC--hHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT--TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~--~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+|+|||||+|.||..||.+|+++|| +|++|||+ +++.+.+.+. ++..+.+++++++. +|+||+|||+
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~-------g~~~~~~~~e~~~~---aDvVi~~vp~ 93 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEEL-------GVSCKASVAEVAGE---CDVIFSLVTA 93 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHT-------TCEECSCHHHHHHH---CSEEEECSCT
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHC-------CCEEeCCHHHHHhc---CCEEEEecCc
Confidence 5799999999999999999999999 99999997 5777766654 36778899999888 9999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC--CCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHH
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIR 159 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~ 159 (505)
... .++++++.+.+.++++|||+||+.+..++++.+.+.++ |++|+++|++|++..+ .|+ ++++||+.+ ++++
T Consensus 94 ~~~-~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~-~g~l~i~vgg~~~--~~~~ 169 (312)
T 3qsg_A 94 QAA-LEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPH-GHRVPLVVDGDGA--RRFQ 169 (312)
T ss_dssp TTH-HHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTT-GGGSEEEEESTTH--HHHH
T ss_pred hhH-HHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhh-cCCEEEEecCChH--HHHH
Confidence 754 45779999999999999999999999999999999888 9999999999987654 566 899999887 8999
Q ss_pred HHHHHHhcccCCCCceEEeCC-CcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHh
Q 010637 160 DILQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVE 238 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~vG~-~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~ 238 (505)
++|+.++ ++++++|+ .|+|+.+|+++|.+.++.+++++|++.++++.| +++ ++.+.+.. +. .++.++
T Consensus 170 ~ll~~~g------~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~-~~~~~l~~---~~-~~~~~~ 237 (312)
T 3qsg_A 170 AAFTLYG------CRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMG-LAD-RVLASLDA---SF-PEHHLR 237 (312)
T ss_dssp HHHHTTT------CEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CHH-HHHHHHHH---HS-GGGTHH
T ss_pred HHHHHhC------CCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCH-HHHHHHHh---cC-CchhHH
Confidence 9999999 78999998 899999999999999999999999999999999 998 56667643 22 233334
Q ss_pred hhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010637 239 ITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 239 ~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s 296 (505)
...+.+.. ++|.++|.+ .||++ .+++.|.++|+|+|++.++ ...|..
T Consensus 238 ~~~~~~~~-~~~~~g~~~---~KDl~------~~~~~a~~~g~~~pl~~~~-~~~~~~ 284 (312)
T 3qsg_A 238 DLALYLVE-RNLEHADRR---AHELG------EVAATLCSVGVEPLVAEAG-YRRLTR 284 (312)
T ss_dssp HHHHHHHH-HHHHHHHHH---HHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHH
T ss_pred HhhhHhhc-CCCCcccch---HHHHH------HHHHHHHHcCCCcHHHHHH-HHHHHH
Confidence 44443333 346667765 57775 8899999999999998864 444443
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=272.06 Aligned_cols=258 Identities=21% Similarity=0.321 Sum_probs=224.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
|+|+|+|||+|.||..++.+|+++|++|.+|||++++.+.+.+.+ +..+.+++++++. +|+||+++|++.
T Consensus 4 M~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~D~vi~~v~~~~ 73 (299)
T 1vpd_A 4 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAG-------AETASTAKAIAEQ---CDVIITMLPNSP 73 (299)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHH
T ss_pred ccceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCC-------CeecCCHHHHHhC---CCEEEEECCCHH
Confidence 457999999999999999999999999999999999988887653 5677899998887 999999999877
Q ss_pred hHHHHH---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHH
Q 010637 85 PVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (505)
Q Consensus 85 ~v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ 160 (505)
.++.++ +++.+.+.++.+||++++..+.+.+++.+.+.+.|++|+++|+++++..+..+. .+++||+++.++.+++
T Consensus 74 ~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (299)
T 1vpd_A 74 HVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYD 153 (299)
T ss_dssp HHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHH
Confidence 788888 678888999999999999998888888888888899999999999988888887 8888999999999999
Q ss_pred HHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhh
Q 010637 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~ 240 (505)
+|+.++ ..++++++.|+|.++|+++|.+.+..+.+++|++.++++.| ++++++.+++ ..+...++.+...
T Consensus 154 ll~~~g------~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~~~ 223 (299)
T 1vpd_A 154 LMKAMA------GSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAG-VNPDLVYQAI---RGGLAGSTVLDAK 223 (299)
T ss_dssp HHHTTE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCCHHHHHH
T ss_pred HHHHHc------CCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HccCCCCHHHHHh
Confidence 999999 67899999999999999999999999999999999999998 9999998886 4555566666544
Q ss_pred hhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHH
Q 010637 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 241 ~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~a 289 (505)
.+.+.+ +++.+++.++.+.++++ ++++.|+++|+|+|++.++
T Consensus 224 ~~~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~~ 265 (299)
T 1vpd_A 224 APMVMD-RNFKPGFRIDLHIKDLA------NALDTSHGVGAQLPLTAAV 265 (299)
T ss_dssp HHHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH
T ss_pred hhHhhc-CCCCCCCChHHHHHHHH------HHHHHHHHcCCCChHHHHH
Confidence 443333 44677889999988875 8999999999999998864
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=277.28 Aligned_cols=254 Identities=13% Similarity=0.125 Sum_probs=204.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCCh-------HHHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcE
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTT-------SKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRS 75 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~-------~~~~~l~~~~~~~g~~~i~~~~-s~~e~v~~l~~adv 75 (505)
|+|+|||||+|.||.+||.+|+++| |+|++|||++ +..+.+.+. ++ +. +++++++. +|+
T Consensus 23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~-------g~--~~~s~~e~~~~---aDv 90 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAEL-------GV--EPLDDVAGIAC---ADV 90 (317)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHT-------TC--EEESSGGGGGG---CSE
T ss_pred cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHC-------CC--CCCCHHHHHhc---CCE
Confidence 5679999999999999999999999 9999999998 344444432 24 56 78888887 999
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHH
Q 010637 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEA 154 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea 154 (505)
||+|||+... .++++++.+.+.++++|||+||+.|.+++++.+.+.++|++|+++|++|++ .+..|. ++++||+.+
T Consensus 91 Vi~avp~~~~-~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~-~a~~g~l~i~vgg~~~- 167 (317)
T 4ezb_A 91 VLSLVVGAAT-KAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARV-PPYAEKVPILVAGRRA- 167 (317)
T ss_dssp EEECCCGGGH-HHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCS-TTTGGGSEEEEESTTH-
T ss_pred EEEecCCHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCc-hhhcCCEEEEEeCChH-
Confidence 9999999754 456689999999999999999999999999999999999999999999964 455666 899999887
Q ss_pred HHHHHHHHHHHhcccCCCCceEEeCC-CcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcc
Q 010637 155 YNNIRDILQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELE 233 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~vG~-~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~ 233 (505)
++++++|+.++ ++++++|+ .|+|+.+|+++|.+.++.+++++|++.++++.| ++++ +.+.+..- +...
T Consensus 168 -~~~~~ll~~~g------~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~G-id~~-~~~~l~~~--~~~~ 236 (317)
T 4ezb_A 168 -VEVAERLNALG------MNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAG-VTER-ILDSVQET--FPGL 236 (317)
T ss_dssp -HHHHHHHHTTT------CEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHH-HHHHHHHH--STTS
T ss_pred -HHHHHHHHHhC------CCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHH-HHHHHHhc--Cccc
Confidence 89999999999 88999998 899999999999999999999999999999999 9995 44444321 1122
Q ss_pred hhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 234 SFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 234 s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
+| +...+.+.. ++|.++|. +.||++ .+++.|.++|+|+|+..++ ...|..+
T Consensus 237 ~~--~~~~~~~~~-~~~~~g~~---~~KDl~------~~~~~a~~~g~~~pl~~~~-~~~~~~a 287 (317)
T 4ezb_A 237 DW--RDVADYYLS-RTFEHGAR---RVTEMT------EAAETIESFGLNAPMSRAA-CETIAAA 287 (317)
T ss_dssp CH--HHHHHHHHH-HHHHHHHH---HHHHHH------HHHHHHHTTTCCCHHHHHH-HHHHHHH
T ss_pred cH--HHhhhhhhc-CCCCCCcc---hHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 33 222232222 33556665 367775 8899999999999998864 5554443
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=267.03 Aligned_cols=262 Identities=21% Similarity=0.340 Sum_probs=226.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++|+|+|||+|.||..++.+|++.|++|.+|||++++.+.+.+.+ +..+.+++++++. +|+||+++|.+.
T Consensus 3 ~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~D~vi~~vp~~~ 72 (301)
T 3cky_A 3 KSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQG-------AQACENNQKVAAA---SDIIFTSLPNAG 72 (301)
T ss_dssp -CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTT-------CEECSSHHHHHHH---CSEEEECCSSHH
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-------CeecCCHHHHHhC---CCEEEEECCCHH
Confidence 356899999999999999999999999999999999988877642 5677899998887 999999999877
Q ss_pred hHHHHHH---HHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHH
Q 010637 85 PVDQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (505)
Q Consensus 85 ~v~~vl~---~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ 160 (505)
.++.++. ++.+.+.++++||+++++.+.+.+++.+.+.++|++|+++|+++++..+..|+ .+++||+++.++.+++
T Consensus 73 ~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~ 152 (301)
T 3cky_A 73 IVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQP 152 (301)
T ss_dssp HHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHH
Confidence 7888885 78888999999999999998888888888888899999999999998888898 8888999999999999
Q ss_pred HHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhh
Q 010637 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~ 240 (505)
+|+.++ .+++++++.|+|..+|+++|.+.+..+.++.|++.++++.| ++++++.+++. .+...++.+..+
T Consensus 153 ll~~~g------~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~~---~~~~~~~~~~~~ 222 (301)
T 3cky_A 153 VLSVIG------KDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCG-LKPETMQEIIG---KSSGRSYAMEAK 222 (301)
T ss_dssp HHHHHE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---TSTTCBHHHHHH
T ss_pred HHHHhc------CCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---cCCCCCHHHHHh
Confidence 999999 67888999999999999999999999999999999999998 99999988874 344556665555
Q ss_pred hh-hccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010637 241 AD-IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRY 294 (505)
Q Consensus 241 ~~-il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~ 294 (505)
.+ .+.. +++.+++.++.+.||++ ++++.|+++|+|+|++.+. ...+
T Consensus 223 ~~~~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~~-~~~~ 269 (301)
T 3cky_A 223 MEKFIMS-GDFAGGFAMDLQHKDLG------LALEAGKEGNVPLPMTAMA-TQIF 269 (301)
T ss_dssp CCCCCCT-CCCSSSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHH
T ss_pred hhhhhhc-CCCCCCccHHHHHHHHH------HHHHHHHHhCCCChHHHHH-HHHH
Confidence 44 2322 45777899999999985 8999999999999998753 4443
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=260.52 Aligned_cols=262 Identities=19% Similarity=0.286 Sum_probs=222.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|+|||+|.||..+|.+|+++|++|++|||++++.+.+.+. ++..+.+++++++. +|+||+++|.+..+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~---~Dvvi~~vp~~~~~ 70 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDA-------GEQVVSSPADVAEK---ADRIITMLPTSINA 70 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTT-------TCEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-------CCeecCCHHHHHhc---CCEEEEeCCCHHHH
Confidence 489999999999999999999999999999999998887764 25677899998887 99999999987788
Q ss_pred HHHHHH---HHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHH
Q 010637 87 DQTIAA---LSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 87 ~~vl~~---l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll 162 (505)
+.++.+ +.+.+.++++||++++..+.+.+++.+.+.+++..|+++|+++|+..+..|. .+++|++++.++.++++|
T Consensus 71 ~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~ 150 (296)
T 2gf2_A 71 IEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELL 150 (296)
T ss_dssp HHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHH
T ss_pred HHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHH
Confidence 888875 4456789999999888888877777777777899999999999988888888 888999999999999999
Q ss_pred HHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhh-
Q 010637 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA- 241 (505)
Q Consensus 163 ~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~- 241 (505)
+.++ .+++++++.|.|+..|+++|.+.+..+.+++|++.++++.| ++++++.+++. .+...+++++...
T Consensus 151 ~~~g------~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G-~~~~~~~~~~~---~~~~~~~~~~~~~~ 220 (296)
T 2gf2_A 151 GCMG------SNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLG-LDPKLLAKILN---MSSGRCWSSDTYNP 220 (296)
T ss_dssp TTTE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---TSTTCBHHHHHSCS
T ss_pred HHHc------CCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hCcccCHHHHhcCC
Confidence 9999 67888999999999999999999999999999999999998 99999999874 3555666665432
Q ss_pred --hhcc---ccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHH
Q 010637 242 --DIFK---VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYL 295 (505)
Q Consensus 242 --~il~---~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~ 295 (505)
..++ ..++|.++|.++.+.||++ ++++.|.++|+|+|+..++ ...+.
T Consensus 221 ~~~~l~~s~~~~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~~-~~~~~ 272 (296)
T 2gf2_A 221 VPGVMDGVPSANNYQGGFGTTLMAKDLG------LAQDSATSTKSPILLGSLA-HQIYR 272 (296)
T ss_dssp STTTCSSSGGGGTTCSSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHH
T ss_pred cccccccchhccCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHH
Confidence 1221 1135677899999999986 8999999999999998864 44443
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-31 Score=262.81 Aligned_cols=257 Identities=23% Similarity=0.345 Sum_probs=221.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+||+|+|||+|.||..+|.+|++.|++|.+|| ++++.+.+.+.+ +..+.+++++++. +|+||+++|...
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g-------~~~~~~~~~~~~~---~D~vi~~vp~~~ 70 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLG-------AVNVETARQVTEF---ADIIFIMVPDTP 70 (295)
T ss_dssp --CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTT-------CBCCSSHHHHHHT---CSEEEECCSSHH
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcC-------CcccCCHHHHHhc---CCEEEEECCCHH
Confidence 35799999999999999999999999999999 998888877642 4567889998876 999999999977
Q ss_pred hHHHHHH---HHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHH
Q 010637 85 PVDQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (505)
Q Consensus 85 ~v~~vl~---~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ 160 (505)
.++.++. ++.+.+.++++||+++|+.+.+.+++.+.+.++|++|+++|+++++..+..|+ .+++||+++.++++++
T Consensus 71 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~ 150 (295)
T 1yb4_A 71 QVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKP 150 (295)
T ss_dssp HHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHH
Confidence 7888887 78888889999999999988888888888888899999999999988888888 8888999999999999
Q ss_pred HHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhh
Q 010637 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~ 240 (505)
+|+.++ ..++++++.|.+..+|+++|.+.+..++++.|++.++++.| ++++++.+++ ..+...++.+...
T Consensus 151 ll~~~g------~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~~~ 220 (295)
T 1yb4_A 151 LFDILG------KNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-ADPVRVRQAL---MGGFASSRILEVH 220 (295)
T ss_dssp HHHHHE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TSSSSCBHHHHHH
T ss_pred HHHHhc------CCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcCCCCCHHHHHh
Confidence 999999 67889999999999999999999999999999999999999 9999988886 4555556665544
Q ss_pred hhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHH
Q 010637 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 241 ~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~a 289 (505)
...+.. +++.+++.++.+.||++ +.++.++++|+|+|++.+.
T Consensus 221 ~~~~~~-~~~~~g~~~~~~~kd~~------~~~~~a~~~g~~~p~~~~~ 262 (295)
T 1yb4_A 221 GERMIN-RTFEPGFKIALHQKDLN------LALQSAKALALNLPNTATC 262 (295)
T ss_dssp HHHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH
T ss_pred hHHHhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH
Confidence 333333 45778889999999985 8899999999999998854
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=259.83 Aligned_cols=256 Identities=23% Similarity=0.294 Sum_probs=220.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|+|||+|.||..+|.+|++ |++|.+|||++++.+.+.+.+ +..++ +++++.. +|+||+|+|+...+
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g-------~~~~~-~~~~~~~---~D~vi~~v~~~~~~ 69 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEF-------GSEAV-PLERVAE---ARVIFTCLPTTREV 69 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHH-------CCEEC-CGGGGGG---CSEEEECCSSHHHH
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCC-------CcccC-HHHHHhC---CCEEEEeCCChHHH
Confidence 689999999999999999999 999999999999988887654 23344 6666665 99999999987668
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHHHHH
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll~~i 165 (505)
+.+++++.+.+.++.+||++|+..+.+.+++.+.+.++|++|+++|+++++..+..|+ .+++|++++.++.++++| .+
T Consensus 70 ~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~~ 148 (289)
T 2cvz_A 70 YEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AY 148 (289)
T ss_dssp HHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TT
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-hh
Confidence 9899999898999999999999988888888888888899999999999998888888 788899999999999999 99
Q ss_pred hcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhh--h
Q 010637 166 AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD--I 243 (505)
Q Consensus 166 ga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~--i 243 (505)
+ ..++++++.+.++++|+++|.+.+..+.+++|++.++++.| ++++++.+++ ..+...+++++.+.+ +
T Consensus 149 g------~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~~~~~~~~ 218 (289)
T 2cvz_A 149 A------KKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQG-VSAEKALEVI---NASSGRSNATENLIPQRV 218 (289)
T ss_dssp E------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCBHHHHHTHHHHT
T ss_pred c------CCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cCHHHHHHHH---HccCCCCHHHHHhccchh
Confidence 8 67889999999999999999999999999999999999998 9999998887 445555666665554 4
Q ss_pred ccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010637 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRY 294 (505)
Q Consensus 244 l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~ 294 (505)
+. +++++++.++.+.||++ ++++.++++|+|+|+..+ +.+.+
T Consensus 219 l~--~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~-v~~~~ 260 (289)
T 2cvz_A 219 LT--RAFPKTFALGLLVKDLG------IAMGVLDGEKAPSPLLRL-AREVY 260 (289)
T ss_dssp TT--SCCCCSSBHHHHHHHHH------HHHHHHTTTCCCCHHHHH-HHHHH
T ss_pred hc--CCCCCCcChHHHHHHHH------HHHHHHHHcCCCChHHHH-HHHHH
Confidence 44 45678899999999985 899999999999999875 34444
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=256.81 Aligned_cols=260 Identities=20% Similarity=0.314 Sum_probs=222.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|+|+|||+|.||..+|.+|++.|++|.+|||++++.+.+.+.+ +....+++++++. +|+||+++|+...
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~DvVi~av~~~~~ 99 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEG-------ARLGRTPAEVVST---CDITFACVSDPKA 99 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTT-------CEECSCHHHHHHH---CSEEEECCSSHHH
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcC-------CEEcCCHHHHHhc---CCEEEEeCCCHHH
Confidence 36899999999999999999999999999999999988877642 5667789888877 9999999997678
Q ss_pred HHHHHHHH---HhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHH
Q 010637 86 VDQTIAAL---SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl~~l---~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~l 161 (505)
++.++.++ .+.+.++++|||++|..+...+++.+.+..+++.|+++|++|++..+..|+ .++++|+++.++.++++
T Consensus 100 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~l 179 (316)
T 2uyy_A 100 AKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSC 179 (316)
T ss_dssp HHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHH
T ss_pred HHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHH
Confidence 88888654 477889999999999998888888888877899999999999998888898 77888899999999999
Q ss_pred HHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhh
Q 010637 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (505)
Q Consensus 162 l~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~ 241 (505)
|+.++ ..++++|+.|.+...|++.|.+....+.++.|++.++++.| ++++++.+++. .+...++.+....
T Consensus 180 l~~~g------~~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G-~~~~~~~~~~~---~~~~~s~~~~~~~ 249 (316)
T 2uyy_A 180 FQAMG------KTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTG-QSQQTLLDILN---QGQLASIFLDQKC 249 (316)
T ss_dssp HHHHE------EEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---HSTTCCHHHHHHH
T ss_pred HHHhc------CCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---cCCCCCHHHHHhh
Confidence 99999 67889999999999999999999999999999999999998 99999988874 3444555554333
Q ss_pred h-hccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010637 242 D-IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRY 294 (505)
Q Consensus 242 ~-il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~ 294 (505)
+ ++. +++++++.++.+.+|++ ++++.|+++|+|+|++.+. .+.+
T Consensus 250 ~~~l~--~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~v-~~~~ 294 (316)
T 2uyy_A 250 QNILQ--GNFKPDFYLKYIQKDLR------LAIALGDAVNHPTPMAAAA-NEVY 294 (316)
T ss_dssp HHHHH--TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHH
T ss_pred HHhhc--CCCCCCCcHHHHHHHHH------HHHHHHHHhCCCChHHHHH-HHHH
Confidence 3 333 34778899999888875 8999999999999998854 3443
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-28 Score=253.70 Aligned_cols=251 Identities=16% Similarity=0.138 Sum_probs=202.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc---------------ccCCCCeeeeCCHHHHHhhcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH---------------REGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~---------------~~g~~~i~~~~s~~e~v~~l~ 71 (505)
.+|+|||+|.||.+||.+|+++||+|++|||++++++.+.+... ..+ +++.+++++++++.
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g--~l~~ttd~~ea~~~-- 84 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAG--RLSFTTDLAEGVKD-- 84 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTT--CEEEESCHHHHHTT--
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccC--CEEEECCHHHHHhc--
Confidence 48999999999999999999999999999999999998875310 011 47888999988887
Q ss_pred CCcEEEEEcCCCc----------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhh
Q 010637 72 RPRSVIILVKAGS----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGAR 141 (505)
Q Consensus 72 ~advIil~vp~~~----------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~ 141 (505)
+|+||+|||++. .++++++++.+.+++|++||++||..|.+++++.+.+.+.+.. .+.++.++|+.++
T Consensus 85 -aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~-~d~~v~~~Pe~a~ 162 (446)
T 4a7p_A 85 -ADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPN-SGAKVVSNPEFLR 162 (446)
T ss_dssp -CSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTT-SCCEEEECCCCCC
T ss_pred -CCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCC-CCceEEeCccccc
Confidence 999999998874 5899999999999999999999999999999998888776432 3445555555555
Q ss_pred cCC---------ccccCCC-HHHHHHHHHHHHHHhcccCCCCc---eEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHH
Q 010637 142 HGP---------SLMPGGS-FEAYNNIRDILQKVAAQVDDGPC---VTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDV 208 (505)
Q Consensus 142 ~G~---------~im~gg~-~ea~~~v~~ll~~iga~~~~~~~---v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l 208 (505)
.|. .+++|++ +++.++++++|+.+. +. ++++++.++|+.+|+++|.+.+..+++++|+..+
T Consensus 163 eG~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~------~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l 236 (446)
T 4a7p_A 163 EGAAIEDFKRPDRVVVGTEDEFARQVMREIYRPLS------LNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADL 236 (446)
T ss_dssp TTSHHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----------CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCCCEEEEeCCcHHHHHHHHHHHHHHh------cCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 553 6788885 789999999998877 43 6888999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHH
Q 010637 209 LKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 209 ~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
+++.| +|++++.+++. .++- +....+. .+++|-...+.||.. ..+..|.++|+++|++.+
T Consensus 237 ~~~~G-iD~~~v~~~~~---~~~r------ig~~~l~----pg~G~gg~c~~KD~~------~l~~~A~~~g~~~~l~~~ 296 (446)
T 4a7p_A 237 CEQVG-ADVQEVSRGIG---MDNR------IGGKFLH----AGPGYGGSCFPKDTL------ALMKTAADNETPLRIVEA 296 (446)
T ss_dssp HHHTT-CCHHHHHHHHH---TSTT------C---CCC----CCSCCCTTTHHHHHH------HHHHHHHHTTCCCHHHHH
T ss_pred HHHcC-CCHHHHHHHHh---cCCC------CCCccCC----CCCCcchhhHHHHHH------HHHHHHHhcCCCCHHHHH
Confidence 99999 99999999973 2220 1111121 134566677888874 788899999999999987
Q ss_pred H
Q 010637 289 S 289 (505)
Q Consensus 289 a 289 (505)
+
T Consensus 297 ~ 297 (446)
T 4a7p_A 297 T 297 (446)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=248.79 Aligned_cols=261 Identities=13% Similarity=0.066 Sum_probs=202.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc---------------ccCCCCeeeeCCHHHHHhhc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH---------------REGQLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~---------------~~g~~~i~~~~s~~e~v~~l 70 (505)
+|||+|||+|.||.++|.+|+++||+|++|||++++++.+.+... ..+ ++..+++++++++.
T Consensus 2 ~mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~--~l~~t~d~~ea~~~- 78 (450)
T 3gg2_A 2 SLDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAG--RLRFGTEIEQAVPE- 78 (450)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTT--SEEEESCHHHHGGG-
T ss_pred CCEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccC--cEEEECCHHHHHhc-
Confidence 369999999999999999999999999999999999988876210 011 47788999998887
Q ss_pred CCCcEEEEEcCCCc---------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCe---EEeCCCCCCHH
Q 010637 71 QRPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL---YLGMGVSGGEE 138 (505)
Q Consensus 71 ~~advIil~vp~~~---------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~---~i~~pvsGg~~ 138 (505)
+|+||+|||++. .++++++++.+.+.++++||+.||..|.+++++.+.+.+.+.. ..+.++.++|+
T Consensus 79 --aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe 156 (450)
T 3gg2_A 79 --ADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPE 156 (450)
T ss_dssp --CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCC
T ss_pred --CCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechh
Confidence 999999999874 7899999999999999999999999999999988877654211 12233444444
Q ss_pred HhhcCC---------ccccCC-CHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHH
Q 010637 139 GARHGP---------SLMPGG-SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDV 208 (505)
Q Consensus 139 ~a~~G~---------~im~gg-~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l 208 (505)
.++.|. .+++|| ++++.++++++|+.++.+ ..++++++.+.++.+|+++|.+.+..+++++|+..+
T Consensus 157 ~a~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~----~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l 232 (450)
T 3gg2_A 157 FLKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLN----NFRVLFMDIASAEMTKYAANAMLATRISFMNDVANL 232 (450)
T ss_dssp CCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCS----CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcC----CCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 577787 589999999999988711 136788888999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHH
Q 010637 209 LKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 209 ~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
+++.| +|++++.+++. .++ ++....+. .+++|-...+.||.. ..+..|.++|+++|++.+
T Consensus 233 ~~~~G-id~~~v~~~~~---~~~------rig~~~~~----pg~G~gg~c~~KD~~------~l~~~a~~~g~~~~l~~~ 292 (450)
T 3gg2_A 233 CERVG-ADVSMVRLGIG---SDS------RIGSKFLY----PGCGYGGSCFPKDVK------ALIRTAEDNGYRMEVLEA 292 (450)
T ss_dssp HHHHT-CCHHHHHHHHH---TST------TTCSSSCC----CSSCCCSSHHHHHHH------HHHHHHHHTTCCCHHHHH
T ss_pred HHHhC-CCHHHHHHHHc---CCC------CCCcccCC----CCCCCCcccHHhhHH------HHHHHHHHcCCCcHHHHH
Confidence 99999 99999999973 221 01011111 123355667788874 788899999999999987
Q ss_pred HHHHHHHh
Q 010637 289 SLDCRYLS 296 (505)
Q Consensus 289 av~~r~~s 296 (505)
+ ...+.+
T Consensus 293 ~-~~iN~~ 299 (450)
T 3gg2_A 293 V-ERVNEK 299 (450)
T ss_dssp H-HHHHHH
T ss_pred H-HHHHHH
Confidence 5 343333
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=244.34 Aligned_cols=253 Identities=11% Similarity=0.038 Sum_probs=201.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC-CC-cEEEEeCChH----HHHHHHHhhc-----------------ccCCCCeeeeC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEK-GF-PISVYNRTTS----KVDETLDRAH-----------------REGQLPLTGHY 61 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~-G~-~V~v~dr~~~----~~~~l~~~~~-----------------~~g~~~i~~~~ 61 (505)
.+|||+|||+|.||.+||.+|+++ || +|++||++++ +++.+.+... ..| ++..++
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g--~l~~tt 94 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAG--KFECTP 94 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTT--CEEEES
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccC--CeEEeC
Confidence 357999999999999999999999 99 9999999999 8888765210 012 466677
Q ss_pred CHHHHHhhcCCCcEEEEEcCCCc-----------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHH--HCC---
Q 010637 62 TPRDFVLSIQRPRSVIILVKAGS-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QKG--- 125 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~-----------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~--~~g--- 125 (505)
+ .+.++. +|+||+|||++. .+..+.+++.+.+++|++||+.||+.|.+++++.+.+. ..|
T Consensus 95 d-~ea~~~---aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~ 170 (478)
T 3g79_A 95 D-FSRISE---LDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKA 170 (478)
T ss_dssp C-GGGGGG---CSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCB
T ss_pred c-HHHHhc---CCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCc
Confidence 7 556666 999999998863 36677789999999999999999999999999886433 234
Q ss_pred ---CeEEeCCCCCCHHHhhc----CCccccCCCHHHHHHHHHHHHHH-hcccCCCCceEEeCCCcchhhhhhHhhhHHHh
Q 010637 126 ---LLYLGMGVSGGEEGARH----GPSLMPGGSFEAYNNIRDILQKV-AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYG 197 (505)
Q Consensus 126 ---i~~i~~pvsGg~~~a~~----G~~im~gg~~ea~~~v~~ll~~i-ga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~ 197 (505)
+.++++|.++.+..+.. .+.+|.|++++.+++++++|+.+ + ..++++++.++|+.+|+++|.+.+.
T Consensus 171 ~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~------~~~~~~~~~~~aE~~Kl~~N~~~a~ 244 (478)
T 3g79_A 171 GEDFALAHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLT------VGQVIPMSATAAEVTKTAENTFRDL 244 (478)
T ss_dssp TTTBEEEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCS------SCCEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEeCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhcc------CCeEEeCCHHHHHHHHHHHHHHHHH
Confidence 57889998877654433 23788999999999999999999 6 5688999999999999999999999
Q ss_pred HhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCch--hHHHHHhhhCCCchHHHHHHH
Q 010637 198 DMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGE--LVDKILDKTGMKGTGKWTVQQ 275 (505)
Q Consensus 198 ~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~--~l~~i~~~~~~kgtg~~~~~~ 275 (505)
.+++++|+..++++.| +|++++.+++. ... ++ +|.. ..|.|++ -...+.||.. ..+..
T Consensus 245 ~Ia~~nE~~~l~e~~G-iD~~~v~~~~~---~~~---~~-ri~~------~~~~PG~G~GG~c~~KD~~------~l~~~ 304 (478)
T 3g79_A 245 QIAAINQLALYCEAMG-INVYDVRTGVD---SLK---GE-GITR------AVLWPGAGVGGHCLTKDTY------HLERG 304 (478)
T ss_dssp HHHHHHHHHHHHHHTT-CCHHHHHHHHH---TSC---CS-SSCC------CCCCCCSCCCSSHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCHHHHHHHHC---CCc---hh-hhcc------ccCCCCCCcchhhHHHHHH------HHHHH
Confidence 9999999999999999 99999999974 211 11 1111 2233433 3456777774 78889
Q ss_pred HHHcCCC-------cchHHHH
Q 010637 276 AAELSVA-------APTIAAS 289 (505)
Q Consensus 276 A~~~gvp-------~p~i~~a 289 (505)
|.++|++ .|++.++
T Consensus 305 a~~~g~~~~~~~~~~~li~~~ 325 (478)
T 3g79_A 305 VKIGRGELDYPEGADSIYVLA 325 (478)
T ss_dssp HTTSSCCCCCCSSCCCHHHHH
T ss_pred HHHcCCCcccccchhHHHHHH
Confidence 9999987 8888865
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-26 Score=223.55 Aligned_cols=245 Identities=16% Similarity=0.181 Sum_probs=193.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeC--ChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNR--TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr--~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
|+|||||+|.||..||.+|+++||+|++||| ++++.+.+.+.+ +. .+++++++. +|+||+|||+..
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g-------~~--~~~~~~~~~---aDvvi~~v~~~~ 68 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVG-------VT--ETSEEDVYS---CPVVISAVTPGV 68 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHT-------CE--ECCHHHHHT---SSEEEECSCGGG
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCC-------Cc--CCHHHHHhc---CCEEEEECCCHH
Confidence 4899999999999999999999999999999 777777776543 44 677788776 999999999975
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHH
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQK 164 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~ 164 (505)
.++. +.++.+.+.+ +|||+++..+.+++++.+.+.+.| |+++|+++++..+..|..++++|+.+ +.+++ |+.
T Consensus 69 ~~~~-~~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~g--~~~~~v~~~~~~~~~g~~~~~~g~~~--~~~~~-l~~ 140 (264)
T 1i36_A 69 ALGA-ARRAGRHVRG--IYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIRIIASGRDA--EEFMK-LNR 140 (264)
T ss_dssp HHHH-HHHHHTTCCS--EEEECSCCCHHHHHHHHHHCSSSE--EEEEEECSCHHHHGGGCEEEEESTTH--HHHHG-GGG
T ss_pred HHHH-HHHHHHhcCc--EEEEccCCCHHHHHHHHHHHhhCC--eeeeeeeCCccccccCCeEEecCCcH--HHhhh-HHH
Confidence 5555 4778887765 999999998888888888877766 89999999998888887777788766 78889 999
Q ss_pred HhcccCCCCceEEeCC-CcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhh
Q 010637 165 VAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243 (505)
Q Consensus 165 iga~~~~~~~v~~vG~-~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~i 243 (505)
+| ++++++++ .|.+..+|+++|.+.+..+.+++|++.++++.| ++++ ..+.+. .+.+.+++. .....
T Consensus 141 ~g------~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G-~~~~-~~~~~~---~~~g~~~~~-~~~~~ 208 (264)
T 1i36_A 141 YG------LNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLG-LEED-VLEMLE---YTEGNDFRE-SAISR 208 (264)
T ss_dssp GT------CEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHH-HHHHHH---TTSCSSTHH-HHHHH
T ss_pred cC------CeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHH-HHHHHH---HhcCccHHH-HHHHH
Confidence 99 78899998 799999999999999999999999999999999 9886 666653 322333332 22222
Q ss_pred ccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010637 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 244 l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s 296 (505)
+. .++.+++. ..++++ .+++.++++ +|+|++.+ +.+.+..
T Consensus 209 ~~--~~~~~g~~---~~~~~~------~~~~~a~~~-v~~p~~~~-v~~~~~~ 248 (264)
T 1i36_A 209 LK--SSCIHARR---RYEEMK------EVQDMLAEV-IDPVMPTC-IIRIFDK 248 (264)
T ss_dssp HH--HHHHTHHH---HHHHHH------HHHHHHHTT-SCCSHHHH-HHHHHHH
T ss_pred hc--CCCCcchh---hHHHHH------HHHHHHHHh-cCchHHHH-HHHHHHH
Confidence 22 23555555 345553 788999999 99999885 4454443
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-25 Score=230.90 Aligned_cols=206 Identities=14% Similarity=0.115 Sum_probs=176.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc-------------ccCCCCeeeeCCHHHHHhhcC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------------REGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~-------------~~g~~~i~~~~s~~e~v~~l~ 71 (505)
.+|||+|||+|.||.++|..|++ ||+|++||+++++++.+.+... ..+ +++.+++++++++.
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~--~l~~ttd~~ea~~~-- 109 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPL--NFRATTDKHDAYRN-- 109 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCC--CEEEESCHHHHHTT--
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccC--CeEEEcCHHHHHhC--
Confidence 35799999999999999999998 9999999999999988775210 011 47888999888887
Q ss_pred CCcEEEEEcCCCc----------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhh
Q 010637 72 RPRSVIILVKAGS----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGAR 141 (505)
Q Consensus 72 ~advIil~vp~~~----------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~ 141 (505)
+|+||+|||++. .++++++.+.+ +.+|++||+.||+.|.+++++.+.+.+.++. .+|+++++..+.
T Consensus 110 -aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v~--~sPe~~~~G~A~ 185 (432)
T 3pid_A 110 -ADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNVI--FSPEFLREGRAL 185 (432)
T ss_dssp -CSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCEE--ECCCCCCTTSHH
T ss_pred -CCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccEe--ecCccCCcchhh
Confidence 999999999862 68888899999 9999999999999999999999888776554 499999987775
Q ss_pred cC----CccccCCCHHHHHHHHHHHHH--HhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCC
Q 010637 142 HG----PSLMPGGSFEAYNNIRDILQK--VAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGL 215 (505)
Q Consensus 142 ~G----~~im~gg~~ea~~~v~~ll~~--iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l 215 (505)
.+ +.+|+||+++.++++.++|.. ++. ...+++++.++|+.+|+++|.+.+..+++++|+..++++.| +
T Consensus 186 ~~~l~p~rIvvG~~~~~~~~~~~ll~~~~~~~-----~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~G-i 259 (432)
T 3pid_A 186 YDNLHPSRIVIGERSARAERFADLLKEGAIKQ-----DIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESQG-L 259 (432)
T ss_dssp HHHHSCSCEEESSCSHHHHHHHHHHHHHCSSS-----SCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred hcccCCceEEecCCHHHHHHHHHHHHhhhccC-----CCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 54 278999999999999999987 331 12356678899999999999999999999999999999999 9
Q ss_pred CHHHHHHHHH
Q 010637 216 SNAELAEIFD 225 (505)
Q Consensus 216 ~~~~i~~v~~ 225 (505)
|.+++.+++.
T Consensus 260 D~~~v~~~~~ 269 (432)
T 3pid_A 260 NSKQIIEGVC 269 (432)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHc
Confidence 9999999973
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=237.75 Aligned_cols=255 Identities=12% Similarity=0.059 Sum_probs=199.1
Q ss_pred cCCCCcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChHHHHHHHHh---------------hcccCCCCeeeeCCHHH
Q 010637 3 ASALSRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDR---------------AHREGQLPLTGHYTPRD 65 (505)
Q Consensus 3 ~~~~~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~---------------~~~~g~~~i~~~~s~~e 65 (505)
|..+|+|+|||+|.||.++|.+|+++ ||+|++|||++++++.+.+. .... ++..++++++
T Consensus 2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~---~~~~t~~~~e 78 (467)
T 2q3e_A 2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGK---NLFFSTNIDD 78 (467)
T ss_dssp CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTT---TEEEESCHHH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcC---CEEEECCHHH
Confidence 34457999999999999999999999 89999999999998875421 0001 4677889988
Q ss_pred HHhhcCCCcEEEEEcCCCch--------------HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 66 FVLSIQRPRSVIILVKAGSP--------------VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 66 ~v~~l~~advIil~vp~~~~--------------v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
+++. +|+||+|||++.. +.++++++.+.+.++++||++||..+.+++++.+.+.+.+..+++.
T Consensus 79 ~~~~---aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~ 155 (467)
T 2q3e_A 79 AIKE---ADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNL 155 (467)
T ss_dssp HHHH---CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEE
T ss_pred HHhc---CCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCe
Confidence 8887 9999999987653 5677788999999999999999999999988888888766545666
Q ss_pred CCCCCHHHhhcCC-c--------cccCC-----CHHHHHHHHHHHHHH-hcccCCCCceEEeCCCcchhhhhhHhhhHHH
Q 010637 132 GVSGGEEGARHGP-S--------LMPGG-----SFEAYNNIRDILQKV-AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEY 196 (505)
Q Consensus 132 pvsGg~~~a~~G~-~--------im~gg-----~~ea~~~v~~ll~~i-ga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~ 196 (505)
+|+++++.+..|. . +++|| ++++.+.++++|+.+ + ..++++++.+.++.+|++.|.+.+
T Consensus 156 ~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g------~~~~~~~~~~~ae~~Kl~~N~~~a 229 (467)
T 2q3e_A 156 QVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVP------REKILTTNTWSSELSKLAANAFLA 229 (467)
T ss_dssp EEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSC------GGGEEEECHHHHHHHHHHHHHHHH
T ss_pred EEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhcc------CCeEEecCHHHHHHHHHHHHHHHH
Confidence 7777777777776 3 77888 788899999999998 5 467888889999999999999999
Q ss_pred hHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHH
Q 010637 197 GDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQA 276 (505)
Q Consensus 197 ~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A 276 (505)
..+++++|+..++++.| ++.+++.+++..+.. ..+ ..+.. +++|--..+.||.. ..+..|
T Consensus 230 ~~ia~~nE~~~l~~~~G-id~~~v~~~~~~~~~--~~~-------~~~~p----g~g~gg~c~~kD~~------~l~~~a 289 (467)
T 2q3e_A 230 QRISSINSISALCEATG-ADVEEVATAIGMDQR--IGN-------KFLKA----SVGFGGSCFQKDVL------NLVYLC 289 (467)
T ss_dssp HHHHHHHHHHHHHHHHT-CCHHHHHHHHHTSTT--TCS-------SSCCC----CSCCCSSSHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-cCHHHHHHHHcCCCC--CCc-------cccCC----CCCCCCccHHHHHH------HHHHHH
Confidence 99999999999999999 999999999853211 010 11111 11122234557764 678889
Q ss_pred HHcCCC--cchHHHH
Q 010637 277 AELSVA--APTIAAS 289 (505)
Q Consensus 277 ~~~gvp--~p~i~~a 289 (505)
.++|+| .+++.++
T Consensus 290 ~~~g~~~~~~~~~~~ 304 (467)
T 2q3e_A 290 EALNLPEVARYWQQV 304 (467)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCchHHHHHHHH
Confidence 999997 4555543
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-24 Score=227.21 Aligned_cols=258 Identities=13% Similarity=0.047 Sum_probs=195.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc---------------cCCCCeeeeCCHHHHHhhc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR---------------EGQLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~---------------~g~~~i~~~~s~~e~v~~l 70 (505)
.|||+|||+|.||.++|.+|+++||+|++||+++++++.+.+.+.. .+ ++..++++++.++.
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~--~l~~ttd~~~a~~~- 84 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAG--RLRFSTDIEAAVAH- 84 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEECCHHHHHHH-
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccC--CEEEECCHHHHhhc-
Confidence 4699999999999999999999999999999999999988764210 11 46788899888877
Q ss_pred CCCcEEEEEcCCC---------chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC---CCeE-EeCCCCCCH
Q 010637 71 QRPRSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK---GLLY-LGMGVSGGE 137 (505)
Q Consensus 71 ~~advIil~vp~~---------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~---gi~~-i~~pvsGg~ 137 (505)
+|+||+|||++ ..++++++.+.+.+.++++||+.||..+.+++++.+.+.+. | .| ++.++.+++
T Consensus 85 --aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g-~~~~~~~v~~~P 161 (478)
T 2y0c_A 85 --GDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKR-GGDQMFSVVSNP 161 (478)
T ss_dssp --CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHT-TCCCCEEEEECC
T ss_pred --CCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCC-CCCccEEEEECh
Confidence 99999999986 68999999999999999999999999899988887776653 3 12 333455555
Q ss_pred HHhhcCC---------ccccCCC-H----HHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHH
Q 010637 138 EGARHGP---------SLMPGGS-F----EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLIS 203 (505)
Q Consensus 138 ~~a~~G~---------~im~gg~-~----ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~ 203 (505)
+.+..|. .++.|++ + ++.+.++++|+.+..+ ..++++++.+.+.+.|++.|.+....+++++
T Consensus 162 e~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~n 237 (478)
T 2y0c_A 162 EFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRN----HERTLYMDVRSAEFTKYAANAMLATRISFMN 237 (478)
T ss_dssp CCCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSS----SCCEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhcc----CCeEEcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444443 5777775 5 7889999999987610 1578888889999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhH--HHHHhhhCCCchHHHHHHHHHHcCC
Q 010637 204 EAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELV--DKILDKTGMKGTGKWTVQQAAELSV 281 (505)
Q Consensus 204 Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l--~~i~~~~~~kgtg~~~~~~A~~~gv 281 (505)
|+..++++.| ++.+++.+.+.. . + .+.. ..+.+++.+ ..+.+|.. ..+..|.++|+
T Consensus 238 E~~~la~~~G-id~~~v~~~i~~---~---~-------rig~--~~~~pG~g~gg~c~~kD~~------~l~~~A~~~gv 295 (478)
T 2y0c_A 238 ELANLADRFG-ADIEAVRRGIGS---D---P-------RIGY--HFLYAGCGYGGSCFPKDVE------ALIRTADEHGQ 295 (478)
T ss_dssp HHHHHHHHTT-CCHHHHHHHHHT---S---T-------TTCS--TTCCCSSCCCSSSHHHHHH------HHHHHHHHTTC
T ss_pred HHHHHHHHhC-CCHHHHHHHHhc---C---C-------ccCc--ccCCCCcccccCcCHHHHH------HHHHHHHHcCC
Confidence 9999999999 999999887631 1 0 0100 011222111 12344543 67789999999
Q ss_pred CcchHHHHHHHHHHh
Q 010637 282 AAPTIAASLDCRYLS 296 (505)
Q Consensus 282 p~p~i~~av~~r~~s 296 (505)
++|++.++ ...+..
T Consensus 296 ~~pl~~~v-~~in~~ 309 (478)
T 2y0c_A 296 SLQILKAV-SSVNAT 309 (478)
T ss_dssp CCHHHHHH-HHHHHH
T ss_pred CcHHHHHH-HHHHHH
Confidence 99999865 344333
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=231.22 Aligned_cols=252 Identities=14% Similarity=0.050 Sum_probs=196.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChHHHHHHHHhhcc--------------cCCCCeeeeCCHHHHHh
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHR--------------EGQLPLTGHYTPRDFVL 68 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~--------------~g~~~i~~~~s~~e~v~ 68 (505)
++|||+|||+|.||.++|.+|+++ ||+|++|||++++++.+.+.... .+ ++..++++++.++
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~--~l~~t~~~~~~~~ 85 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGR--NLFFSSDIPKAIA 85 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTT--TEEEESCHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcC--CEEEECCHHHHhh
Confidence 357999999999999999999998 79999999999999887642100 01 3677888888777
Q ss_pred hcCCCcEEEEEcCCCc--------------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH-CCC------e
Q 010637 69 SIQRPRSVIILVKAGS--------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ-KGL------L 127 (505)
Q Consensus 69 ~l~~advIil~vp~~~--------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~-~gi------~ 127 (505)
. +|+||+|||++. .++++++++.+.+.++++||++||..+..++++.+.+.+ .++ .
T Consensus 86 ~---aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~ 162 (481)
T 2o3j_A 86 E---ADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQ 162 (481)
T ss_dssp H---CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEE
T ss_pred c---CCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceE
Confidence 7 999999998764 388888999999999999999999999999888888877 542 2
Q ss_pred EEeCCCCCCHHHhh----cCCccccCCCH-----HHHHHHHHHHHHHhcccCCCC-ceEEeCCCcchhhhhhHhhhHHHh
Q 010637 128 YLGMGVSGGEEGAR----HGPSLMPGGSF-----EAYNNIRDILQKVAAQVDDGP-CVTYIGEGGSGNFVKMVHNGIEYG 197 (505)
Q Consensus 128 ~i~~pvsGg~~~a~----~G~~im~gg~~-----ea~~~v~~ll~~iga~~~~~~-~v~~vG~~G~g~~vK~v~N~i~~~ 197 (505)
+...|....+..+. ..+.+++|++. +++++++++|+.++ + .++++++.+.+.++|++.|.+...
T Consensus 163 v~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~------~~~~~~~~d~~~ae~~Kl~~N~~~a~ 236 (481)
T 2o3j_A 163 VLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWV------PRNRIITTNTWSSELSKLVANAFLAQ 236 (481)
T ss_dssp EEECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTS------CGGGEEEEEHHHHHHHHHHHHHHHHH
T ss_pred EEeCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhc------CCCeEEecCHHHHHHHHHHHHHHHHH
Confidence 34566555443322 22267888764 67889999999998 4 577888889999999999999999
Q ss_pred HhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCc--hhHHHHHhhhCCCchHHHHHHH
Q 010637 198 DMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEG--ELVDKILDKTGMKGTGKWTVQQ 275 (505)
Q Consensus 198 ~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~--~~l~~i~~~~~~kgtg~~~~~~ 275 (505)
.+++++|+..++++.| ++.+++.+++. .+. .+... .+.|+ +-...+.||.. ..+..
T Consensus 237 ~ia~~nE~~~la~~~G-id~~~v~~~~~---~~~------ri~~~------~~~pg~g~gg~c~~KD~~------~l~~~ 294 (481)
T 2o3j_A 237 RISSINSISAVCEATG-AEISEVAHAVG---YDT------RIGSK------FLQASVGFGGSCFQKDVL------SLVYL 294 (481)
T ss_dssp HHHHHHHHHHHHHHHS-CCHHHHHHHHH---TST------TTCSS------SCCCCSCCCSSSHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHhC-cCHHHHHHHHc---cCC------CCCCC------CCCCCCccCCccHHHHHH------HHHHH
Confidence 9999999999999999 99999999873 221 01011 12232 23445667774 67889
Q ss_pred HHHcCCC--cchHHHH
Q 010637 276 AAELSVA--APTIAAS 289 (505)
Q Consensus 276 A~~~gvp--~p~i~~a 289 (505)
|.++|+| +|++.++
T Consensus 295 A~~~g~~~~~~l~~~~ 310 (481)
T 2o3j_A 295 CESLNLPQVADYWQGV 310 (481)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCCccchHHHHH
Confidence 9999999 8988865
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-24 Score=223.91 Aligned_cols=202 Identities=12% Similarity=0.140 Sum_probs=170.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc---------------cCCCCeeeeCCHHHHHhhcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR---------------EGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~---------------~g~~~i~~~~s~~e~v~~l~ 71 (505)
.|..|||+|.||.+||.+|+++||+|++||+++++++.+.+.... .| ++..+++ ++
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g--~l~~ttd-------~~ 82 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSG--KLKVSTT-------PE 82 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEESS-------CC
T ss_pred CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccC--ceEEeCc-------hh
Confidence 579999999999999999999999999999999999998763210 11 2444443 23
Q ss_pred CCcEEEEEcCCCc-----------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH-CC------CeEEeCCC
Q 010637 72 RPRSVIILVKAGS-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ-KG------LLYLGMGV 133 (505)
Q Consensus 72 ~advIil~vp~~~-----------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~-~g------i~~i~~pv 133 (505)
.+|+||+|||++. .+..+.+++.+.+++|++||+.||+.|.+++++.+.+.+ .| +.++++|.
T Consensus 83 ~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe 162 (431)
T 3ojo_A 83 ASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPE 162 (431)
T ss_dssp CCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCC
T ss_pred hCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCC
Confidence 4999999999975 377778999999999999999999999999998876544 55 37889997
Q ss_pred CCCHHHhhcC---C-ccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHH
Q 010637 134 SGGEEGARHG---P-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVL 209 (505)
Q Consensus 134 sGg~~~a~~G---~-~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~ 209 (505)
+..+..+..+ + .++.|+++++.++++++|+.++ +.++++++.++|+.+|+++|.+.+..+++++|+..++
T Consensus 163 ~~~~G~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~~~------~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~ 236 (431)
T 3ojo_A 163 RVLPGKILEELVHNNRIIGGVTKACIEAGKRVYRTFV------QGEMIETDARTAEMSKLMENTYRDVNIALANELTKIC 236 (431)
T ss_dssp CCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHTTTC------CSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchhhcccCCCEEEEeCCHHHHHHHHHHHHHHh------CCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665444322 3 7889999999999999999998 6678889999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 010637 210 KHVGGLSNAELAEIF 224 (505)
Q Consensus 210 ~~~g~l~~~~i~~v~ 224 (505)
++.| +|.+++.+++
T Consensus 237 e~~G-iD~~~v~~~~ 250 (431)
T 3ojo_A 237 NNLN-INVLDVIEMA 250 (431)
T ss_dssp HHTT-CCHHHHHHHH
T ss_pred HHcC-CCHHHHHHHH
Confidence 9999 9999999997
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=216.39 Aligned_cols=286 Identities=16% Similarity=0.134 Sum_probs=208.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCC---C----CeeeeCCHHHHHhhcCCCcEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ---L----PLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~---~----~i~~~~s~~e~v~~l~~advIil 78 (505)
+|||+|||+|.||.++|..|+++||+|.+|+|++++++.+.+.+.+... . ++..+++++++++. +|+||+
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~---aDvVil 105 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEG---VTDILI 105 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTT---CCEEEE
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhc---CCEEEE
Confidence 4689999999999999999999999999999999999988876432100 0 36677899888876 999999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhH----HHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHH
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT----ERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFE 153 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t----~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~e 153 (505)
+||+. .++++++++.+.++++.+||+++++....+ +.+.+.+....+.++..|.+..+..+...+ .++.+.+++
T Consensus 106 aVp~~-~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via~~~~~ 184 (356)
T 3k96_A 106 VVPSF-AFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNSQ 184 (356)
T ss_dssp CCCHH-HHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEEESCHH
T ss_pred CCCHH-HHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEecCCHH
Confidence 99984 899999999999999999999999776654 223333333455677788776544433333 445667889
Q ss_pred HHHHHHHHHHHHhcccCCCCceEEeCC-----------------CcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCC
Q 010637 154 AYNNIRDILQKVAAQVDDGPCVTYIGE-----------------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLS 216 (505)
Q Consensus 154 a~~~v~~ll~~iga~~~~~~~v~~vG~-----------------~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~ 216 (505)
..+.++++|+..+ ..++...+ .|.+..+|+.+|.....+...++|+..++++.| .+
T Consensus 185 ~~~~v~~lf~~~~------~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G-~~ 257 (356)
T 3k96_A 185 FSKDLIERLHGQR------FRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFG-GK 257 (356)
T ss_dssp HHHHHHHHHCCSS------EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT-CC
T ss_pred HHHHHHHHhCCCC------eeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 9999999998766 34444333 256667899999999999999999999999999 99
Q ss_pred HHHHHHHHHHhccCCcchhHHhhhhhhccccccC----CCchhHHHHHhhhCCCchHHHHH----HHHHHcCCCcchHHH
Q 010637 217 NAELAEIFDEWNKGELESFLVEITADIFKVKDEY----GEGELVDKILDKTGMKGTGKWTV----QQAAELSVAAPTIAA 288 (505)
Q Consensus 217 ~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~----~~~~~l~~i~~~~~~kgtg~~~~----~~A~~~gvp~p~i~~ 288 (505)
++++.+. .|.++ |+-.....+.++..+ ..+..++.+++.++++-+|..++ +.|+++|+++|++.+
T Consensus 258 ~~t~~gl-----~g~gD--l~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~ 330 (356)
T 3k96_A 258 QETLTGL-----AGLGD--LVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQ 330 (356)
T ss_dssp HHHHTST-----TTHHH--HHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred hHhhccc-----chhhH--HHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHH
Confidence 9987643 22222 111111111111111 12346677888888988886655 568999999999885
Q ss_pred HHHHHHHhcchHHHHHHHHHhcc
Q 010637 289 SLDCRYLSGLKEEREKAAKVLKE 311 (505)
Q Consensus 289 av~~r~~s~~~~~r~~~~~~~~~ 311 (505)
| .+.+...++.+..+..++..
T Consensus 331 -v-~~il~~~~~~~~~~~~l~~r 351 (356)
T 3k96_A 331 -V-HRILHEDLDPQQAVQELLER 351 (356)
T ss_dssp -H-HHHHHSCCCHHHHHHHHHSC
T ss_pred -H-HHHHhCCCCHHHHHHHHHcC
Confidence 4 56666667778888777653
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-24 Score=223.81 Aligned_cols=253 Identities=15% Similarity=0.147 Sum_probs=189.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc---------------cCCCCeeeeCCHHHHHhhcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR---------------EGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~---------------~g~~~i~~~~s~~e~v~~l~ 71 (505)
|||+|||+|.||..+|.+|+++||+|++|||++++++.+.+.+.. .| ++..+++++++++.
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g--~l~~t~~~~~~~~~-- 76 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTG--RLSGTTDFKKAVLD-- 76 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEESCHHHHHHT--
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccC--ceEEeCCHHHHhcc--
Confidence 589999999999999999999999999999999999887752100 11 36778899888776
Q ss_pred CCcEEEEEcCCCch---------HHHHHHHHHhcCCC---CcEEEecCCCCchh-HHHHHHHHHHC-CCeE-EeCCCCCC
Q 010637 72 RPRSVIILVKAGSP---------VDQTIAALSEHMSP---GDCIIDGGNEWYLN-TERRIHEASQK-GLLY-LGMGVSGG 136 (505)
Q Consensus 72 ~advIil~vp~~~~---------v~~vl~~l~~~l~~---g~iIId~st~~~~~-t~~~~~~l~~~-gi~~-i~~pvsGg 136 (505)
+|+||+|||++.. ++++++++.+.+.+ +++||+.||..+.. .+.+.+.+.+. |..+ ++.++.++
T Consensus 77 -aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~ 155 (436)
T 1mv8_A 77 -SDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTN 155 (436)
T ss_dssp -CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEEC
T ss_pred -CCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEEC
Confidence 9999999998765 89999999998988 99999999998888 55566666653 5433 23334444
Q ss_pred HHHhhcCC---------ccccCCC-HHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHH
Q 010637 137 EEGARHGP---------SLMPGGS-FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAY 206 (505)
Q Consensus 137 ~~~a~~G~---------~im~gg~-~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~ 206 (505)
++.+..|. .++.|++ +++.+.++++++.++ ..++. ++.+.+..+|++.|.+.+..+++++|+.
T Consensus 156 Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~------~~v~~-~~~~~ae~~Kl~~N~~~a~~ia~~nE~~ 228 (436)
T 1mv8_A 156 PEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELD------APIIR-KTVEVAEMIKYTCNVWHAAKVTFANEIG 228 (436)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSS------SCEEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccC------CCEEc-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333332 5677775 888999999999998 44444 7789999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchH
Q 010637 207 DVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTI 286 (505)
Q Consensus 207 ~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i 286 (505)
.++++.| ++.+++.+++. ... .+.. ....+. .+.++-...+.+|.. ..+..|.++|+++|++
T Consensus 229 ~l~~~~G-id~~~v~~~~~---~~~--r~~~--~~~~~~----pg~g~gg~~~~kD~~------~l~~~a~~~g~~~pl~ 290 (436)
T 1mv8_A 229 NIAKAVG-VDGREVMDVIC---QDH--KLNL--SRYYMR----PGFAFGGSCLPKDVR------ALTYRASQLDVEHPML 290 (436)
T ss_dssp HHHHHTT-SCHHHHHHHHT---TCT--TTTT--SSTTCS----CCSCCCSSSHHHHHH------HHHHHHHHTTCCCTTG
T ss_pred HHHHHhC-CCHHHHHHHhc---CCC--CCCC--cccCCC----CcccccCcCcHhhHH------HHHHHHHHcCCCcHHH
Confidence 9999999 99999988863 111 0000 001111 011233334555553 6778999999999999
Q ss_pred HHH
Q 010637 287 AAS 289 (505)
Q Consensus 287 ~~a 289 (505)
.++
T Consensus 291 ~~v 293 (436)
T 1mv8_A 291 GSL 293 (436)
T ss_dssp GGH
T ss_pred HHH
Confidence 865
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-22 Score=207.38 Aligned_cols=247 Identities=13% Similarity=0.022 Sum_probs=187.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc-------------cCCCCeeeeCCHHHHHhhcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR-------------EGQLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~-------------~g~~~i~~~~s~~e~v~~l~~a 73 (505)
|||+|||+|.||..+|.+|++ ||+|++|||++++++.+.+.+.. .+ ++..++++++.++. +
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~--~l~~t~~~~~~~~~---a 74 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQL--SIKATLDSKAAYKE---A 74 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCC--CEEEESCHHHHHHH---C
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccC--cEEEeCCHHHHhcC---C
Confidence 589999999999999999999 99999999999999888764321 00 34667788887777 9
Q ss_pred cEEEEEcCCCc----------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhh--
Q 010637 74 RSVIILVKAGS----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGAR-- 141 (505)
Q Consensus 74 dvIil~vp~~~----------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~-- 141 (505)
|+||+|||+.. .++++++.+.+ +.++++||+.||..+..++++.+.+.+. .++.+|....+..+.
T Consensus 75 Dvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~G~a~~~ 151 (402)
T 1dlj_A 75 ELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYD 151 (402)
T ss_dssp SEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHH
T ss_pred CEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccCcchhhc
Confidence 99999999974 58999999999 8999999999999999988888776554 567778766554332
Q ss_pred -cCC-ccccCCCH-------HHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHh
Q 010637 142 -HGP-SLMPGGSF-------EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV 212 (505)
Q Consensus 142 -~G~-~im~gg~~-------ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~ 212 (505)
..+ .++.|++. +..+.+.++|..-..+ ...++++++.+.+.++|++.|.+.+..+++++|+..++++.
T Consensus 152 ~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~ 228 (402)
T 1dlj_A 152 NLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKK---NNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESR 228 (402)
T ss_dssp HHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSC---SCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhcc---CCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223 68888876 5566677777643210 01257788899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCC--chhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHH
Q 010637 213 GGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGE--GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 213 g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~--~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~a 289 (505)
| +|.+++.+++. .+. . +.. ..+.| +|-...+.||.. .....| .|+++|++.++
T Consensus 229 G-id~~~v~~~~~---~~~---r-------i~~--~~~~pg~g~gg~c~~kD~~------~l~~~a--~~~~~~l~~~~ 283 (402)
T 1dlj_A 229 K-LNSHMIIQGIS---YDD---R-------IGM--HYNNPSFGYGGYSLPKDTK------QLLANY--NNIPQTLIEAI 283 (402)
T ss_dssp T-CCHHHHHHHHH---TST---T-------TCS--SSCCCCSSCCSSHHHHHHH------HHHHHH--TTSSCSHHHHH
T ss_pred C-CCHHHHHHHhc---cCC---C-------CCc--CCCCCCCccCCccHHhhHH------HHHHHh--cCCChHHHHHH
Confidence 9 99999998873 222 0 111 01122 355557777763 444455 38999999875
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-23 Score=201.91 Aligned_cols=176 Identities=16% Similarity=0.158 Sum_probs=142.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH--------------HHHHHHhhcccCCCCeeeeCCHHHHHhhcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK--------------VDETLDRAHREGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~--------------~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~ 71 (505)
.++|||||+|.||.+||.+|+++||+|++|||++++ .+++.+.. +...+.+++++++.
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~e~~~~-- 90 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH------PHVHLAAFADVAAG-- 90 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGS------TTCEEEEHHHHHHH--
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc------CceeccCHHHHHhc--
Confidence 478999999999999999999999999999999987 44544331 12346788888887
Q ss_pred CCcEEEEEcCCCchHHHHHHHH-HhcCCCCcEEEecCCC-----------CchhHHHHHHHHHH--------CCCeEEeC
Q 010637 72 RPRSVIILVKAGSPVDQTIAAL-SEHMSPGDCIIDGGNE-----------WYLNTERRIHEASQ--------KGLLYLGM 131 (505)
Q Consensus 72 ~advIil~vp~~~~v~~vl~~l-~~~l~~g~iIId~st~-----------~~~~t~~~~~~l~~--------~gi~~i~~ 131 (505)
+|+||+|||+. .+.+++.++ .+.+ ++++|||++|. .|.++.+..+.+++ +++.++++
T Consensus 91 -aDvVilavp~~-~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~a 167 (245)
T 3dtt_A 91 -AELVVNATEGA-SSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNA 167 (245)
T ss_dssp -CSEEEECSCGG-GHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSCH
T ss_pred -CCEEEEccCcH-HHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccCH
Confidence 99999999996 566777788 7777 89999999954 33333344444444 37888999
Q ss_pred CCCCCHHHhhcCC-ccccCC-CHHHHHHHHHHHHHHhcccCCCC-ceEEeCCCcchhhhhhHhhhHHHhH
Q 010637 132 GVSGGEEGARHGP-SLMPGG-SFEAYNNIRDILQKVAAQVDDGP-CVTYIGEGGSGNFVKMVHNGIEYGD 198 (505)
Q Consensus 132 pvsGg~~~a~~G~-~im~gg-~~ea~~~v~~ll~~iga~~~~~~-~v~~vG~~G~g~~vK~v~N~i~~~~ 198 (505)
|+++++..+..|+ .++++| ++++++.++++|+.++ . .++++|+.|+|+.+|+++|.+....
T Consensus 168 ~v~~~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g------~~~~~~~G~~g~a~~~k~~~~~~~~l~ 231 (245)
T 3dtt_A 168 SLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLG------HQDVIDLGDITTARGAEMLLPVWIRLW 231 (245)
T ss_dssp HHHHCGGGTGGGCCCEEEECSCHHHHHHHHHHHHHTT------CCCEEEEESGGGHHHHHTTHHHHHHHH
T ss_pred HHhcCccccCCCCeeEEEECCCHHHHHHHHHHHHHcC------CCceeccCcHHHHHHhhhhHHHHHHHH
Confidence 9999998888888 677655 6899999999999999 4 4789999999999999999877655
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-22 Score=200.16 Aligned_cols=260 Identities=17% Similarity=0.145 Sum_probs=176.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCC------CeeeeCCHHHHHhhcCCCcEEEE
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL------PLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~------~i~~~~s~~e~v~~l~~advIil 78 (505)
+||||+|||+|.||..+|.+|+++||+|++|||++++.+.+.+.+...... ++.. .+..++.+.++.+|+||+
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~vi~ 80 (316)
T 2ew2_A 2 NAMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPI-FSPEEIDHQNEQVDLIIA 80 (316)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCE-ECGGGCCTTSCCCSEEEE
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEeccee-ecchhhcccCCCCCEEEE
Confidence 357999999999999999999999999999999999998887654210000 0111 134455443345999999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCH--HHhhcCC-ccc--cC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGE--EGARHGP-SLM--PG 149 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~--~~a~~G~-~im--~g 149 (505)
+||+. .++++++++.+.+.++++||+++|+.. ..+.+.+.+.+. |..++++++++.. .....|. .++ .+
T Consensus 81 ~v~~~-~~~~v~~~l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~ 158 (316)
T 2ew2_A 81 LTKAQ-QLDAMFKAIQPMITEKTYVLCLLNGLG-HEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENIDP 158 (316)
T ss_dssp CSCHH-HHHHHHHHHGGGCCTTCEEEECCSSSC-THHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEESSG
T ss_pred Eeccc-cHHHHHHHHHHhcCCCCEEEEecCCCC-cHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecCC
Confidence 99985 789999999999999999999998764 334444444433 3333344444421 2223454 443 35
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHH---------------------HhHhhHHHHHHHH
Q 010637 150 GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIE---------------------YGDMQLISEAYDV 208 (505)
Q Consensus 150 g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~---------------------~~~~~~i~Ea~~l 208 (505)
++++..+.++++|+.++ ..+.+.++.+.+.+.|++.|.+. ..+.+++.|+..+
T Consensus 159 ~~~~~~~~~~~ll~~~g------~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~l 232 (316)
T 2ew2_A 159 SGKKFALEVVDVFQKAG------LNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAV 232 (316)
T ss_dssp GGHHHHHHHHHHHHHTT------CCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCC------CCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 67888999999999999 67888888899999999999652 4567889999999
Q ss_pred HHHhCCCCH--HHHHHHHHHhccCC--cchhHHhhhhhh-ccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCc
Q 010637 209 LKHVGGLSN--AELAEIFDEWNKGE--LESFLVEITADI-FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAA 283 (505)
Q Consensus 209 ~~~~g~l~~--~~i~~v~~~~~~g~--~~s~l~~~~~~i-l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~ 283 (505)
+++.| +++ +.+.+.+..+.... ..++ ..+..++ .. ++..+ +.++. | ..++.|+++|+|+
T Consensus 233 a~~~G-~~~~~~~~~~~~~~~~~~~~~~~~~-~sm~~d~~~~-------g~~~E-~~~~~-----~-~~~~~a~~~gv~~ 296 (316)
T 2ew2_A 233 AEKEA-IYLDQAEVYTHIVQTYDPNGIGLHY-PSMYQDLIKN-------HRLTE-IDYIN-----G-AVWRKGQKYNVAT 296 (316)
T ss_dssp HHHTT-CCCCHHHHHHHHHHTTCTTTTTTSC-CHHHHHHTTT-------CCCCS-GGGTH-----H-HHHHHHHHHTCCC
T ss_pred HHHcC-CCCChHHHHHHHHHHhccccCCCCC-cHHHHHHHHc-------CCcch-HHHHh-----h-HHHHHHHHhCCCC
Confidence 99998 886 46666664322211 1111 0111222 11 11122 23333 2 7889999999999
Q ss_pred chHHHH
Q 010637 284 PTIAAS 289 (505)
Q Consensus 284 p~i~~a 289 (505)
|++...
T Consensus 297 P~~~~~ 302 (316)
T 2ew2_A 297 PFCAML 302 (316)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 998753
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-21 Score=190.16 Aligned_cols=187 Identities=11% Similarity=0.140 Sum_probs=141.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.||.+||.+|+ +||+|++|||++++++++.+.....---+++.++++++ ++. +|+||+|||++..
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~---aDlVieavpe~~~ 86 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKD---CDIVMEAVFEDLN 86 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGG---CSEEEECCCSCHH
T ss_pred CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcC---CCEEEEcCcCCHH
Confidence 368999999999999999999 99999999999999988876510000003677888877 555 9999999999988
Q ss_pred HHHHH-HHHHhcCCCCcEEE-ecCCCCchhHHHHHH-HHHHCCCeEEeCCCCCCHHHhhcCC--ccccC--CCHHHHHHH
Q 010637 86 VDQTI-AALSEHMSPGDCII-DGGNEWYLNTERRIH-EASQKGLLYLGMGVSGGEEGARHGP--SLMPG--GSFEAYNNI 158 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iII-d~st~~~~~t~~~~~-~l~~~gi~~i~~pvsGg~~~a~~G~--~im~g--g~~ea~~~v 158 (505)
++.++ .++.+ + ++.+++ |+||..+....+... ..+..|+||++ |+.+ ++ .+++| +++++++++
T Consensus 87 vk~~l~~~l~~-~-~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~-Pv~~-------~~lveiv~g~~t~~~~~~~~ 156 (293)
T 1zej_A 87 TKVEVLREVER-L-TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMN-PPHV-------MPLVEIVISRFTDSKTVAFV 156 (293)
T ss_dssp HHHHHHHHHHT-T-CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECS-STTT-------CCEEEEEECTTCCHHHHHHH
T ss_pred HHHHHHHHHhc-C-CCCEEEEECCCcCHHHHHHHhhcccceEeEEecC-cccc-------CCEEEEECCCCCCHHHHHHH
Confidence 88777 55555 4 888886 566766543322111 11234889988 5543 33 56666 599999999
Q ss_pred HHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010637 159 RDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (505)
Q Consensus 159 ~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~ 225 (505)
+++++.+| +.++++|+. |+++|.+. ..++|++.++++ | ++++++++++.
T Consensus 157 ~~l~~~lG------k~~v~v~d~------fi~Nrll~----~~~~EA~~l~~~-G-v~~e~id~~~~ 205 (293)
T 1zej_A 157 EGFLRELG------KEVVVCKGQ------SLVNRFNA----AVLSEASRMIEE-G-VRAEDVDRVWK 205 (293)
T ss_dssp HHHHHHTT------CEEEEEESS------CHHHHHHH----HHHHHHHHHHHH-T-CCHHHHHHHHH
T ss_pred HHHHHHcC------CeEEEeccc------ccHHHHHH----HHHHHHHHHHHh-C-CCHHHHHHHHH
Confidence 99999999 889999864 56655543 568999999999 7 79999999973
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=186.45 Aligned_cols=198 Identities=10% Similarity=0.104 Sum_probs=162.1
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|||+|+|||+ |.||..+|.+|+++|++|++|||++++.+.+.+.+ +.. .++.++++. +|+||++||+.
T Consensus 10 mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g-------~~~-~~~~~~~~~---aDvVi~av~~~ 78 (286)
T 3c24_A 10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMG-------IPL-TDGDGWIDE---ADVVVLALPDN 78 (286)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTT-------CCC-CCSSGGGGT---CSEEEECSCHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcC-------CCc-CCHHHHhcC---CCEEEEcCCch
Confidence 4579999999 99999999999999999999999999988877632 333 256666665 99999999996
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE-eCCCCCCH------HHhhcCC--------c--c
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGE------EGARHGP--------S--L 146 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsGg~------~~a~~G~--------~--i 146 (505)
.++++++++.+.+.++.+|||+|+..+... +.+ + ..+..|+ .+|++|++ .....|. . +
T Consensus 79 -~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~--l~~-~-~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~ 153 (286)
T 3c24_A 79 -IIEKVAEDIVPRVRPGTIVLILDAAAPYAG--VMP-E-RADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCA 153 (286)
T ss_dssp -HHHHHHHHHGGGSCTTCEEEESCSHHHHHT--CSC-C-CTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEE
T ss_pred -HHHHHHHHHHHhCCCCCEEEECCCCchhHH--HHh-h-hCCCeEEecCCCCccccccccchhhccCcccccccceeeee
Confidence 589999999999999999999888764322 222 2 2367898 78999887 6567772 2 3
Q ss_pred ccCCCHHHHHHHHHHHHHHhcccCCCC---ceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHh-CCCCHHHHHH
Q 010637 147 MPGGSFEAYNNIRDILQKVAAQVDDGP---CVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV-GGLSNAELAE 222 (505)
Q Consensus 147 m~gg~~ea~~~v~~ll~~iga~~~~~~---~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~-g~l~~~~i~~ 222 (505)
..+++++.++.++++|+.+| . +++++++.+.+.+.|.+.|+.....+..++|++..+... | ++.+++.+
T Consensus 154 ~~~~~~~~~~~v~~l~~~~G------~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~G-l~~~~~~~ 226 (286)
T 3c24_A 154 LMQGPEEHYAIGADICETMW------SPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYG-IDRQAALD 226 (286)
T ss_dssp EEESCTHHHHHHHHHHHHHT------CSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhc------CCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHH
Confidence 35689999999999999999 6 689999888888889999999999999999988776665 7 99999988
Q ss_pred HHH
Q 010637 223 IFD 225 (505)
Q Consensus 223 v~~ 225 (505)
++.
T Consensus 227 ~~~ 229 (286)
T 3c24_A 227 FMI 229 (286)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-21 Score=196.99 Aligned_cols=275 Identities=12% Similarity=0.025 Sum_probs=183.3
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccC---C----CCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG---Q----LPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g---~----~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
+|+|||+|.||..||.+|+++||+|++|||++++++.+.+.+.... + .++..+.+++++++. +|+||+||
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDvVilav 93 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG---AEIILFVI 93 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT---CSSEEECC
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcC---CCEEEECC
Confidence 8999999999999999999999999999999999988876542100 0 035677888888776 99999999
Q ss_pred CCCchHHHHHHH----HHhcCCC-CcEEEecCCCCchh-HHHHHHHHHHC-CC---eEEeCCCCCCHHHhhcCC---ccc
Q 010637 81 KAGSPVDQTIAA----LSEHMSP-GDCIIDGGNEWYLN-TERRIHEASQK-GL---LYLGMGVSGGEEGARHGP---SLM 147 (505)
Q Consensus 81 p~~~~v~~vl~~----l~~~l~~-g~iIId~st~~~~~-t~~~~~~l~~~-gi---~~i~~pvsGg~~~a~~G~---~im 147 (505)
|+ ..+++++.+ +.+.+.+ +++||+++++.... .+...+.+.+. +. .++..|..... ...|. .++
T Consensus 94 ~~-~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~--~~~g~~~~~~~ 170 (366)
T 1evy_A 94 PT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIE--VATGVFTCVSI 170 (366)
T ss_dssp CH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHH--HHTTCCEEEEE
T ss_pred Ch-HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHH--HHhCCceEEEE
Confidence 98 688999988 9888888 99999999765433 23344444433 32 23344433221 12333 344
Q ss_pred cCCCHHHHHHHHHHHHHH--hcccCCCCceEEeCCC-----------------cchhhhhhHhhhHHHhHhhHHHHHHHH
Q 010637 148 PGGSFEAYNNIRDILQKV--AAQVDDGPCVTYIGEG-----------------GSGNFVKMVHNGIEYGDMQLISEAYDV 208 (505)
Q Consensus 148 ~gg~~ea~~~v~~ll~~i--ga~~~~~~~v~~vG~~-----------------G~g~~vK~v~N~i~~~~~~~i~Ea~~l 208 (505)
.+++++.++.++++|+.. + ..+++.++. |....+|+.+|.+....+.++.|+..+
T Consensus 171 ~~~~~~~~~~v~~ll~~~g~g------~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~l 244 (366)
T 1evy_A 171 ASADINVARRLQRIMSTGDRS------FVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDL 244 (366)
T ss_dssp ECSSHHHHHHHHHHHSCTTSS------EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHhcCCCCe------EEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHH
Confidence 567888999999999988 6 345555542 222234666888888899999999999
Q ss_pred HHHhCCCCHHHHHHHH---HHhccCCcchhHHhh---hhhhccccccCCCchhHHH----------HHhhhCCCchHHHH
Q 010637 209 LKHVGGLSNAELAEIF---DEWNKGELESFLVEI---TADIFKVKDEYGEGELVDK----------ILDKTGMKGTGKWT 272 (505)
Q Consensus 209 ~~~~g~l~~~~i~~v~---~~~~~g~~~s~l~~~---~~~il~~~~~~~~~~~l~~----------i~~~~~~kgtg~~~ 272 (505)
+++.| ++++++.++. ..|.. ..|.+.+. ..++.. ++.++. +.++++ .+
T Consensus 245 a~a~G-i~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~e~~~~~~------~v 308 (366)
T 1evy_A 245 TAALG-GDGSAVFGLAGLGDLQLT--CSSELSRNFTVGKKLGK-------GLPIEEIQRTSKAVAEGVATAD------PL 308 (366)
T ss_dssp HHHTT-CCCTTTTSTTTHHHHHHH--HTCTTSHHHHHHHHHHT-------TCCHHHHHC---CCCHHHHHHH------HH
T ss_pred HHHhC-CCCccccccccchhheee--ecCCCCchHHHHHHHhC-------CCCHHHHHHHcCCeeehHHHHH------HH
Confidence 99999 9876553320 00000 00111111 111111 111222 224443 68
Q ss_pred HHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccC
Q 010637 273 VQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEA 312 (505)
Q Consensus 273 ~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~ 312 (505)
++.|+++|+|+|+.... .+.+...++.+..+..++..+
T Consensus 309 ~~~a~~~gv~~P~~~~v--~~~~~~~~~~~~~~~~l~~~~ 346 (366)
T 1evy_A 309 MRLAKQLKVKMPLCHQI--YEIVYKKKNPRDALADLLSCG 346 (366)
T ss_dssp HHHHHHHTCCCHHHHHH--HHHHHSCCCHHHHHHHHGGGC
T ss_pred HHHHHHhCCCCcHHHHH--HHHHHCCCCHHHHHHHHHcCC
Confidence 89999999999998853 455556677788887777543
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-21 Score=194.53 Aligned_cols=277 Identities=11% Similarity=0.042 Sum_probs=176.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhccc---C-CCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE---G-QLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~---g-~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|.|||+|||+|.||..||.+|+++||+|++|||++++++.+.+.+... + .+++..++++++ ++. +|+||++|
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~---aDvVil~v 88 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKK---EDILVIAI 88 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCT---TEEEEECS
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcC---CCEEEEEC
Confidence 567999999999999999999999999999999999999888765210 0 002466778887 665 99999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCch-hHHHHHHHHHHC-C--CeEEeCCCCCCHHHhhcCC-c-cccCCCHHH
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQK-G--LLYLGMGVSGGEEGARHGP-S-LMPGGSFEA 154 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~-~t~~~~~~l~~~-g--i~~i~~pvsGg~~~a~~G~-~-im~gg~~ea 154 (505)
|+ .++++++.++.+ ++++||+++|+... +.+.+.+.+.+. + ..++..|....+ ...|. . +..|++.
T Consensus 89 k~-~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~--~~~g~~~~~~~g~~~-- 160 (335)
T 1z82_A 89 PV-QYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEE--VAKKLPTAVTLAGEN-- 160 (335)
T ss_dssp CG-GGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHH--HHTTCCEEEEEEETT--
T ss_pred CH-HHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHH--HhCCCceEEEEEehh--
Confidence 97 688988877655 78999999976543 333445554432 2 223334433211 22444 3 3344433
Q ss_pred HHHHHHHHHHHhcccCCCCceEEeCCC-----------------cchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCH
Q 010637 155 YNNIRDILQKVAAQVDDGPCVTYIGEG-----------------GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~vG~~-----------------G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
++.++++|+..+ ..+++.++. |.+..+|+.+|........++.|+..++++.| +++
T Consensus 161 ~~~~~~ll~~~g------~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G-~~~ 233 (335)
T 1z82_A 161 SKELQKRISTEY------FRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFG-ADQ 233 (335)
T ss_dssp HHHHHHHHCCSS------EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCH
T ss_pred HHHHHHHhCCCC------EEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhC-CCh
Confidence 788999998877 445554431 33345677788888889999999999999999 998
Q ss_pred HHHHHHH--HH-hccCCcchhHHhhh--hhhccccccCCCchhHHHHHhhhCC-----CchHHHHHHHHHHcCCCcchHH
Q 010637 218 AELAEIF--DE-WNKGELESFLVEIT--ADIFKVKDEYGEGELVDKILDKTGM-----KGTGKWTVQQAAELSVAAPTIA 287 (505)
Q Consensus 218 ~~i~~v~--~~-~~~g~~~s~l~~~~--~~il~~~~~~~~~~~l~~i~~~~~~-----kgtg~~~~~~A~~~gvp~p~i~ 287 (505)
+++.++. .+ +.. ..|...+.. ...+.. + +..+.+.+..++ |..| .+++.|+++|+|+|+..
T Consensus 234 ~~~~~l~~~~~~~~t--~~s~~~~n~~~~~~~~~-g-----~~~~~~~~~~g~~~e~~~~~~-~v~~~a~~~gv~~P~~~ 304 (335)
T 1z82_A 234 KTFMGLAGIGDLMVT--CNSRYSRNRRFGELIAR-G-----FNPLKLLESSNQVVEGAFTVK-AVMKIAKENKIDMPISE 304 (335)
T ss_dssp HHHTSTTTHHHHHHH--HHCTTCHHHHHHHHHHH-T-----CCHHHHHHTCSSCCTHHHHHH-HHHHHHHHTTCCCHHHH
T ss_pred hhhcccccccceeee--ccCccCcHHHHHHHHhC-C-----CCHHHHHHhcCCeeeHHHHHH-HHHHHHHHhCCCCcHHH
Confidence 8765421 00 000 001111110 111111 1 112222221111 1112 67889999999999988
Q ss_pred HHHHHHHHhcchHHHHHHHHHhcc
Q 010637 288 ASLDCRYLSGLKEEREKAAKVLKE 311 (505)
Q Consensus 288 ~av~~r~~s~~~~~r~~~~~~~~~ 311 (505)
+. .+.+...++.+..+..++..
T Consensus 305 ~v--~~~~~~~~~~~~~~~~l~~~ 326 (335)
T 1z82_A 305 EV--YRVVYEGKPPLQSMRDLMRR 326 (335)
T ss_dssp HH--HHHHHSCCCHHHHHHHHHC-
T ss_pred HH--HHHHhCCCCHHHHHHHHHcC
Confidence 53 45555667777777777643
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=177.50 Aligned_cols=226 Identities=15% Similarity=0.140 Sum_probs=161.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|+|+|||+|.||..++.+|.+.|++|.+|||++++.+.+.+.. ++..+.+++++++. +|+||+++|+ .
T Consensus 2 ~~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~---~D~Vi~~v~~-~ 71 (259)
T 2ahr_A 2 NAMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL------ALPYAMSHQDLIDQ---VDLVILGIKP-Q 71 (259)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH------TCCBCSSHHHHHHT---CSEEEECSCG-G
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc------CCEeeCCHHHHHhc---CCEEEEEeCc-H
Confidence 357999999999999999999999999999999999988887642 24567789888876 9999999995 4
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCC--CHHHHHHHHHH
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGG--SFEAYNNIRDI 161 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg--~~ea~~~v~~l 161 (505)
.+.+++.. +.+|++||+.+++.... .+.+.+. .+.+++. ++.+.+.....|. .+++|+ +++.++.++++
T Consensus 72 ~~~~v~~~----l~~~~~vv~~~~~~~~~--~l~~~~~-~~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l 143 (259)
T 2ahr_A 72 LFETVLKP----LHFKQPIISMAAGISLQ--RLATFVG-QDLPLLR-IMPNMNAQILQSSTALTGNALVSQELQARVRDL 143 (259)
T ss_dssp GHHHHHTT----SCCCSCEEECCTTCCHH--HHHHHHC-TTSCEEE-EECCGGGGGTCEEEEEEECTTCCHHHHHHHHHH
T ss_pred hHHHHHHH----hccCCEEEEeCCCCCHH--HHHHhcC-CCCCEEE-EcCCchHHHcCceEEEEcCCCCCHHHHHHHHHH
Confidence 66666654 44788999997655433 2333333 4566776 5666676666777 666776 88999999999
Q ss_pred HHHHhcccCCCCceEEeCCCcchhhhhhHh--hhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchh-HHh
Q 010637 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVH--NGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESF-LVE 238 (505)
Q Consensus 162 l~~iga~~~~~~~v~~vG~~G~g~~vK~v~--N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~-l~~ 238 (505)
|+.+| .++++++.....++++.. |.+.+..+..++|+ +.+.| ++++++.+++.. +...++ ++.
T Consensus 144 l~~~G-------~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~---~~~~G-l~~~~~~~~~~~---~~~~~~~~~~ 209 (259)
T 2ahr_A 144 TDSFG-------STFDISEKDFDTFTALAGSSPAYIYLFIEALAKA---GVKNG-IPKAKALEIVTQ---TVLASASNLK 209 (259)
T ss_dssp HHTTE-------EEEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHhCC-------CEEEecHHHccHHHHHhccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH---HHHHHHHHHH
Confidence 99998 378888866666666642 44556666667766 56778 999999988743 333333 332
Q ss_pred hh---hhhccccccCCCchhHHHHHhhh
Q 010637 239 IT---ADIFKVKDEYGEGELVDKILDKT 263 (505)
Q Consensus 239 ~~---~~il~~~~~~~~~~~l~~i~~~~ 263 (505)
.. ...++. +.++|++.+...++++
T Consensus 210 ~~~~~p~~l~~-~~~~p~~~~~~~~~~l 236 (259)
T 2ahr_A 210 TSSQSPHDFID-AICSPGGTTIAGLMEL 236 (259)
T ss_dssp HSSSCHHHHHH-HHCCTTSHHHHHHHHH
T ss_pred hcCCCHHHHHH-hCCCCChhHHHHHHHH
Confidence 22 123322 2346677777766665
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=189.03 Aligned_cols=253 Identities=15% Similarity=0.102 Sum_probs=180.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh---------------hcccCCCCeeeeCCHHHHHhh
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR---------------AHREGQLPLTGHYTPRDFVLS 69 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~---------------~~~~g~~~i~~~~s~~e~v~~ 69 (505)
.|.+|+|||+|.||.++|..|+++||+|+++|.++++++.+.+. ....| +++.++++++.+..
T Consensus 20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g--~l~~tt~~~~ai~~ 97 (444)
T 3vtf_A 20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSG--RLSFAESAEEAVAA 97 (444)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEECSSHHHHHHT
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcC--CeeEEcCHHHHHhc
Confidence 35689999999999999999999999999999999998887531 11122 57788899988887
Q ss_pred cCCCcEEEEEcCCC---------chHHHHHHHHHhcCC---CCcEEEecCCCCchhHHHHHHHH-HHC--C--CeEEeCC
Q 010637 70 IQRPRSVIILVKAG---------SPVDQTIAALSEHMS---PGDCIIDGGNEWYLNTERRIHEA-SQK--G--LLYLGMG 132 (505)
Q Consensus 70 l~~advIil~vp~~---------~~v~~vl~~l~~~l~---~g~iIId~st~~~~~t~~~~~~l-~~~--g--i~~i~~p 132 (505)
+|++|+|||++ ..++++.+.+.+.++ ++++||..||+.|.+|+++...+ .+. | +....+|
T Consensus 98 ---ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~P 174 (444)
T 3vtf_A 98 ---TDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNP 174 (444)
T ss_dssp ---SSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEECC
T ss_pred ---CCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecCc
Confidence 99999999864 247777788877764 68999999999999998876544 332 2 3334445
Q ss_pred CCCCHH----HhhcCCccccCC-CHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHH
Q 010637 133 VSGGEE----GARHGPSLMPGG-SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYD 207 (505)
Q Consensus 133 vsGg~~----~a~~G~~im~gg-~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~ 207 (505)
-.-.+- ....-+.++.|+ ++++.+.++++++.+. ..++.+ ...++.++|++.|.+.+..+++++|...
T Consensus 175 Erl~eG~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~------~~~~~~-~~~~AE~~Kl~eN~~ravnIa~~NEla~ 247 (444)
T 3vtf_A 175 EFLREGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVD------APKLVM-KPREAELVKYASNVFLALKISFANEVGL 247 (444)
T ss_dssp CCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSC------SCEEEE-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCccccccccCCcEEEcCCCHHHHHHHHHHHhccC------CCEEEe-chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322111 112223456565 6677788888887766 345544 4578999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHH
Q 010637 208 VLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIA 287 (505)
Q Consensus 208 l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~ 287 (505)
++++.| +|..++.+.+.. ..... ...+.-.-.|+++ -+-+|.. .....|.++|++.+++.
T Consensus 248 ice~~G-iDv~eV~~a~~~--d~rig-------~~~l~PG~G~GG~----CipkD~~------~L~~~a~~~g~~~~li~ 307 (444)
T 3vtf_A 248 LAKRLG-VDTYRVFEAVGL--DKRIG-------RHYFGAGLGFGGS----CFPKDTL------AFIRFGESLGLEMAISK 307 (444)
T ss_dssp HHHHTT-CCHHHHHHHHHT--STTSC-------STTCCCSSCCCTT----THHHHHH------HHHHHHHHTTCCCHHHH
T ss_pred HHHHcC-CCHHHHHHHhcc--CCCCC-------CCCCCCCCCCCCc----ccCcCHH------HHHHHHHhcCCCHHHHH
Confidence 999999 999999998731 00110 0112211113333 2334431 45667999999999887
Q ss_pred HH
Q 010637 288 AS 289 (505)
Q Consensus 288 ~a 289 (505)
++
T Consensus 308 a~ 309 (444)
T 3vtf_A 308 AV 309 (444)
T ss_dssp HH
T ss_pred hh
Confidence 65
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-20 Score=191.19 Aligned_cols=285 Identities=11% Similarity=0.065 Sum_probs=184.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC-------CcEEEEeCChH-----HHHHHHHhhccc----C---CCCeeeeCCHHH
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKG-------FPISVYNRTTS-----KVDETLDRAHRE----G---QLPLTGHYTPRD 65 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G-------~~V~v~dr~~~-----~~~~l~~~~~~~----g---~~~i~~~~s~~e 65 (505)
|||||+|||+|.||..||.+|+++| ++|++|||+++ +++.+.+.+... + ..++..++++++
T Consensus 20 ~~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~e 99 (375)
T 1yj8_A 20 GPLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLAS 99 (375)
T ss_dssp SCBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHH
Confidence 4568999999999999999999999 99999999998 888876643210 0 003677788888
Q ss_pred HHhhcCCCcEEEEEcCCCchHHHHHHHHHh----cCCCCcEEEecCCCCch---hHHHHHHHHHHC-C--CeEEeCCCCC
Q 010637 66 FVLSIQRPRSVIILVKAGSPVDQTIAALSE----HMSPGDCIIDGGNEWYL---NTERRIHEASQK-G--LLYLGMGVSG 135 (505)
Q Consensus 66 ~v~~l~~advIil~vp~~~~v~~vl~~l~~----~l~~g~iIId~st~~~~---~t~~~~~~l~~~-g--i~~i~~pvsG 135 (505)
+++. +|+||++||+ ..+++++.++.+ .+.++++||+++++... ..+.+.+.+.+. + ..++..|...
T Consensus 100 a~~~---aDvVilav~~-~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a 175 (375)
T 1yj8_A 100 VIND---ADLLIFIVPC-QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCSALSGANIA 175 (375)
T ss_dssp HHTT---CSEEEECCCH-HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEEEEECSCCH
T ss_pred HHcC---CCEEEEcCCH-HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEEEEeCCchH
Confidence 8776 9999999998 689999999998 89999999999987543 122333333331 2 2233333222
Q ss_pred CHHHhhcCC---ccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCC-----------------cchhhhhhHhhhHH
Q 010637 136 GEEGARHGP---SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG-----------------GSGNFVKMVHNGIE 195 (505)
Q Consensus 136 g~~~a~~G~---~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~-----------------G~g~~vK~v~N~i~ 195 (505)
. ....|. .++.+++++..+.++++|+..+ ..+++.++. |....+|+.+|...
T Consensus 176 ~--~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g------~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~ 247 (375)
T 1yj8_A 176 M--DVAMENFSEATIGGNDKDSLVIWQRVFDLPY------FKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKS 247 (375)
T ss_dssp H--HHHTTCCEEEEEECSCHHHHHHHHHHHCBTT------EEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred H--HHHhCCCeEEEEecCCHHHHHHHHHHhCCCC------eEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHH
Confidence 1 112333 4456678889999999999877 456665553 22233466688888
Q ss_pred HhHhhHHHHHHHHHHHhC-CCCHHHHHH------HHHHhccCCcchhHHhhhhhhccccc-cCCCchhHHHHHhhh--CC
Q 010637 196 YGDMQLISEAYDVLKHVG-GLSNAELAE------IFDEWNKGELESFLVEITADIFKVKD-EYGEGELVDKILDKT--GM 265 (505)
Q Consensus 196 ~~~~~~i~Ea~~l~~~~g-~l~~~~i~~------v~~~~~~g~~~s~l~~~~~~il~~~~-~~~~~~~l~~i~~~~--~~ 265 (505)
..+.++++|+..++++.| |++++++.+ ++..-. + ..++.+ ...+...+ .+ .++.+.+++ ++
T Consensus 248 a~~~~~~~E~~~la~a~G~G~~~~~~~~~~g~~dl~~t~~-~-~~~~~~---~~~~~~~g~~~----~~~d~~~~~~~g~ 318 (375)
T 1yj8_A 248 AIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSFL-A-GRNAKC---SAEFIKSTPKK----TWEELENEILKGQ 318 (375)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCGGGGGSTTTHHHHHHHHS-S-SSHHHH---HHHHHHHTTSS----CHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCCCcchhhccccccceeEeee-C-CccHHH---HHHHHhcCCCC----CHHHHHHhhcCCc
Confidence 889999999999999995 598776532 221110 1 111111 11111100 01 112222211 22
Q ss_pred CchH----HHHHHHHHHcCC--CcchHHHHHHHHHHhcchHHHHHHHHHhccC
Q 010637 266 KGTG----KWTVQQAAELSV--AAPTIAASLDCRYLSGLKEEREKAAKVLKEA 312 (505)
Q Consensus 266 kgtg----~~~~~~A~~~gv--p~p~i~~av~~r~~s~~~~~r~~~~~~~~~~ 312 (505)
+-+| ..+++.|+++|+ |+|+.... .+.+...++.+..+..++..|
T Consensus 319 ~~E~~~~~~~v~~~a~~~gv~~~~P~~~~v--~~~~~~~~~~~~~~~~l~~~~ 369 (375)
T 1yj8_A 319 KLQGTVTLKYVYHMIKEKNMTNEFPLFTVL--HKISFENEDPSSLLKTFMNNK 369 (375)
T ss_dssp CCHHHHHHHHHHHHHHHTTCGGGCHHHHHH--HHHHHSCCCTTHHHHHHSSCC
T ss_pred EeeHHHHHHHHHHHHHHhCCCCCCCHHHHH--HHHHhCCCCHHHHHHHHHcCc
Confidence 2211 256789999999 99998853 456666777777777776543
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-20 Score=183.44 Aligned_cols=198 Identities=17% Similarity=0.146 Sum_probs=153.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+|+|+|||+|.||..+|..|+++|++ |.+|||++++.+.+.+.. ++..+.+++++++. +|+||+++|+.
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~---~Dvvi~av~~~- 79 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV------EAEYTTDLAEVNPY---AKLYIVSLKDS- 79 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT------TCEEESCGGGSCSC---CSEEEECCCHH-
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc------CCceeCCHHHHhcC---CCEEEEecCHH-
Confidence 46899999999999999999999999 999999999988877652 25667788877665 99999999996
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccc-cCCCHHHHHHHHHHHH
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLM-PGGSFEAYNNIRDILQ 163 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im-~gg~~ea~~~v~~ll~ 163 (505)
.++++++++.+.++++.+|++++++.+.+. +.+.+...+..+..+|++|++.....+..++ .+++++.++.++++|+
T Consensus 80 ~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 157 (266)
T 3d1l_A 80 AFAELLQGIVEGKREEALMVHTAGSIPMNV--WEGHVPHYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIAS 157 (266)
T ss_dssp HHHHHHHHHHTTCCTTCEEEECCTTSCGGG--STTTCSSEEEEEECCCC---CCCCCTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcEEEECCCCCchHH--HHHHHHhccCcCCceecCCCchhhcCCCeEEEecCCHHHHHHHHHHHH
Confidence 678899999988889999999999987654 3333333355566778887543222333344 4889999999999999
Q ss_pred HHhcccCCCCceEEeCCCc---chhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010637 164 KVAAQVDDGPCVTYIGEGG---SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDE 226 (505)
Q Consensus 164 ~iga~~~~~~~v~~vG~~G---~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~ 226 (505)
.+| ..++++++.+ ....+|+++|.. +.+..++|+ ++++.| ++++++.+++..
T Consensus 158 ~~g------~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ea--l~~~~G-l~~~~~~~l~~~ 212 (266)
T 3d1l_A 158 TLS------NRVYDADSEQRKSLHLAAVFTCNFT--NHMYALAAE--LLKKYN-LPFDVMLPLIDE 212 (266)
T ss_dssp TTC------SCEEECCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHTT-CCGGGGHHHHHH
T ss_pred hcC------CcEEEeCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHcC-CCHHHHHHHHHH
Confidence 999 7889998754 456789999984 345666776 567888 999998888754
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-21 Score=190.82 Aligned_cols=252 Identities=19% Similarity=0.210 Sum_probs=168.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCC-CCee-eeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ-LPLT-GHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~-~~i~-~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
|||+|||+|.||..+|.+|+++|++|++|||++++.+.+...+. .+. +... ..++. +.++. +|+||++||+.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~-~~~~~~~~~~~~~~-~~~~~---~d~vi~~v~~~- 74 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVET-DGSIFNESLTANDP-DFLAT---SDLLLVTLKAW- 74 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECT-TSCEEEEEEEESCH-HHHHT---CSEEEECSCGG-
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcC-CCceeeeeeeecCc-cccCC---CCEEEEEecHH-
Confidence 58999999999999999999999999999999876544322211 000 0011 23444 45555 99999999996
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH--CCCeEEeCCCCCC-HHHhhcCC-cccc-CCCHHHHHHHH
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLGMGVSGG-EEGARHGP-SLMP-GGSFEAYNNIR 159 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~gi~~i~~pvsGg-~~~a~~G~-~im~-gg~~ea~~~v~ 159 (505)
.++++++++.+.+.++.+||+++|+.. ..+.+.+.+.+ .|..+.++...+. ...+..|. .+++ +++++.++.++
T Consensus 75 ~~~~v~~~l~~~l~~~~~vv~~~~g~~-~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~g~~~i~~~~~~~~~~~~~~ 153 (291)
T 1ks9_A 75 QVSDAVKSLASTLPVTTPILLIHNGMG-TIEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLA 153 (291)
T ss_dssp GHHHHHHHHHTTSCTTSCEEEECSSSC-TTGGGTTCCSCEEEEEECCEEEEETTEEEEEECCCEEEEESSGGGTTCTHHH
T ss_pred hHHHHHHHHHhhCCCCCEEEEecCCCC-cHHHHHHhcCCeEEEEEeEccEEcCCEEEEecccceEEccCCCCcchHHHHH
Confidence 689999999999999999999988752 22233333332 1222222222222 23344565 4443 55677888999
Q ss_pred HHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHH------------------HhHhhHHHHHHHHHHHhCCCCH--HH
Q 010637 160 DILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIE------------------YGDMQLISEAYDVLKHVGGLSN--AE 219 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~------------------~~~~~~i~Ea~~l~~~~g~l~~--~~ 219 (505)
++|+.++ .++.+.++.+.+.+.|++.|... ..+.+++.|+..++++.| ++. ++
T Consensus 154 ~ll~~~g------~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G-~~~~~~~ 226 (291)
T 1ks9_A 154 DILQTVL------PDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREG-HHTSAED 226 (291)
T ss_dssp HHHHTTS------SCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHT-CCCCHHH
T ss_pred HHHHhcC------CCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcC-CCCCHHH
Confidence 9999998 77888888899999999999877 677899999999999998 875 55
Q ss_pred HHHHHHHh-cc-CCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHH
Q 010637 220 LAEIFDEW-NK-GELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (505)
Q Consensus 220 i~~v~~~~-~~-g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~a 289 (505)
+.+.+.+. .. +...|.+. .++...+ . ..++.+ .| +.++.|+++|+|+|+....
T Consensus 227 ~~~~~~~~~~~~~~~~ssm~---~d~~~g~--~---~e~~~~--------~g-~~~~~a~~~gv~~P~~~~~ 281 (291)
T 1ks9_A 227 LRDYVMQVIDATAENISSML---QDIRALR--H---TEIDYI--------NG-FLLRRARAHGIAVPENTRL 281 (291)
T ss_dssp HHHHHHHHHHHTTTCCCHHH---HHHHTTC--C---CSGGGT--------HH-HHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCChHH---HHHHcCC--c---cHHHHH--------HH-HHHHHHHHhCCCCCHHHHH
Confidence 53333221 11 11222222 2332211 1 122222 23 6889999999999998753
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-20 Score=186.79 Aligned_cols=252 Identities=16% Similarity=0.156 Sum_probs=168.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-----C-CcEEEEeCChHHHHHHHH-hhccc----CC---CCeeeeCCHHHHHhhcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-----G-FPISVYNRTTSKVDETLD-RAHRE----GQ---LPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-----G-~~V~v~dr~~~~~~~l~~-~~~~~----g~---~~i~~~~s~~e~v~~l~ 71 (505)
+|+|+|||+|.||..+|.+|+++ | ++|++|+| +++.+.+.+ .+... +. .++...++. +.+..
T Consensus 8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 83 (317)
T 2qyt_A 8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNP-AEVGT-- 83 (317)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCH-HHHCC--
T ss_pred CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCc-cccCC--
Confidence 46899999999999999999999 9 99999999 888888876 43210 00 001112333 34444
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH----CCCeEEeCCCCCCH--HHhhcCCc
Q 010637 72 RPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGVSGGE--EGARHGPS 145 (505)
Q Consensus 72 ~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~pvsGg~--~~a~~G~~ 145 (505)
+|+||+|||+. .++++++.+.+.+.++++||+++|+.. ..+.+.+.+.+ .|+.++++++++.. ..+..|..
T Consensus 84 -~D~vil~vk~~-~~~~v~~~i~~~l~~~~~iv~~~nG~~-~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~~ 160 (317)
T 2qyt_A 84 -VDYILFCTKDY-DMERGVAEIRPMIGQNTKILPLLNGAD-IAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADREL 160 (317)
T ss_dssp -EEEEEECCSSS-CHHHHHHHHGGGEEEEEEEEECSCSSS-HHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred -CCEEEEecCcc-cHHHHHHHHHhhcCCCCEEEEccCCCC-cHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCce
Confidence 89999999996 579999999999988999999988753 33444444433 35556777776421 22233443
Q ss_pred c-c----cCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHH-------------------hHhhH
Q 010637 146 L-M----PGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEY-------------------GDMQL 201 (505)
Q Consensus 146 i-m----~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~-------------------~~~~~ 201 (505)
. + .+++.+.+ .+.++|+..+ ..+.+.++.+.+.+.|++.|.+.. ....+
T Consensus 161 ~~ig~~~~~~~~~~~-~~~~ll~~~g------~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~ 233 (317)
T 2qyt_A 161 FYFGSGLPEQTDDEV-RLAELLTAAG------IRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSL 233 (317)
T ss_dssp EEEECCSSSCCHHHH-HHHHHHHHTT------CCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHH
T ss_pred EEEcCCCCCCcCHHH-HHHHHHHHCC------CCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3 3 33457777 8999999998 678888889999999999998653 34589
Q ss_pred HHHHHHHHHHhCCCCHH--HHHHHHHHhccCCcchhHHhhhhhhccccccCCCchh--HHHHHhhhCCCchHHHHHHHHH
Q 010637 202 ISEAYDVLKHVGGLSNA--ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGEL--VDKILDKTGMKGTGKWTVQQAA 277 (505)
Q Consensus 202 i~Ea~~l~~~~g~l~~~--~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~--l~~i~~~~~~kgtg~~~~~~A~ 277 (505)
+.|+..++++.| ++++ .+.+.+...... .......++. ++..++. ++.+ .| +.++.|+
T Consensus 234 ~~E~~~v~~a~G-~~~~~~~~~~~~~~~~~~-----~~~~~~sm~~---d~~~g~~~E~~~~--------~g-~~~~~a~ 295 (317)
T 2qyt_A 234 LEEVAELFRAKY-GQVPDDVVQQLLDKQRKM-----PPESTSSMHS---DFLQGGSTEVETL--------TG-YVVREAE 295 (317)
T ss_dssp HHHHHHHHHHHT-SCCCSSHHHHHHHHHHHC----------------------------CTT--------TH-HHHHHHH
T ss_pred HHHHHHHHHHcC-CCCChHHHHHHHHHHhcc-----CCCCCChHHH---HHHcCCccCHHHH--------hh-HHHHHHH
Confidence 999999999998 8864 566665432110 0111111111 1222222 2222 23 7889999
Q ss_pred HcCCCcchHHHH
Q 010637 278 ELSVAAPTIAAS 289 (505)
Q Consensus 278 ~~gvp~p~i~~a 289 (505)
++|+|+|+....
T Consensus 296 ~~gv~~P~~~~~ 307 (317)
T 2qyt_A 296 ALRVDLPMYKRM 307 (317)
T ss_dssp HTTCCCHHHHHH
T ss_pred HcCCCCCHHHHH
Confidence 999999998753
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-19 Score=180.33 Aligned_cols=201 Identities=10% Similarity=0.043 Sum_probs=145.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeC--ChHHHHHHHHhhccc--C-C-CCeeeeC--CHHHHHhhcCCCcEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNR--TTSKVDETLDRAHRE--G-Q-LPLTGHY--TPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr--~~~~~~~l~~~~~~~--g-~-~~i~~~~--s~~e~v~~l~~advIil 78 (505)
|||+|||+|.||..+|.+|+++||+|++||| ++++.+.+.+.+... | . .++...+ +++++++. +|+||+
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~D~vi~ 77 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLEN---AEVVLL 77 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTT---CSEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhc---CCEEEE
Confidence 5899999999999999999999999999999 999988887654210 0 0 0124555 67776665 999999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCC---c-hhHHHHHHHHHHC-CC----eEEeCCCCCCHHHhhcCC--ccc
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW---Y-LNTERRIHEASQK-GL----LYLGMGVSGGEEGARHGP--SLM 147 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~---~-~~t~~~~~~l~~~-gi----~~i~~pvsGg~~~a~~G~--~im 147 (505)
+||+. .++++++.+.+ +.++++||+++|+. + ...+.+.+.+.+. |. .+...|.. ......|. .++
T Consensus 78 ~v~~~-~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~--~~~~~~g~~~~~~ 153 (335)
T 1txg_A 78 GVSTD-GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAI--AREVAKRMPTTVV 153 (335)
T ss_dssp CSCGG-GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCC--HHHHHTTCCEEEE
T ss_pred cCChH-HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCc--HHHHHccCCcEEE
Confidence 99996 78999999999 99999999999775 3 3344555555543 32 12222221 11122233 344
Q ss_pred c-CCCHHHHHHHHHHHHHHhcccCCCCceEEeCCC-----------------cchhhhhhH-----hhhHHHhHhhHHHH
Q 010637 148 P-GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG-----------------GSGNFVKMV-----HNGIEYGDMQLISE 204 (505)
Q Consensus 148 ~-gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~-----------------G~g~~vK~v-----~N~i~~~~~~~i~E 204 (505)
+ +++++.++.++++|+..+ .++.+.++. |..+.+|+. +|.......+++.|
T Consensus 154 ~~~~~~~~~~~~~~ll~~~g------~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E 227 (335)
T 1txg_A 154 FSSPSESSANKMKEIFETEY------FGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINE 227 (335)
T ss_dssp EECSCHHHHHHHHHHHCBTT------EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHhCCCc------EEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 4 457888999999999887 456666654 333345777 78888888999999
Q ss_pred HHHHHHHhCCCCHHHHH
Q 010637 205 AYDVLKHVGGLSNAELA 221 (505)
Q Consensus 205 a~~l~~~~g~l~~~~i~ 221 (505)
+..++++.| ++++++.
T Consensus 228 ~~~la~~~G-~~~~~~~ 243 (335)
T 1txg_A 228 MAELIEILG-GDRETAF 243 (335)
T ss_dssp HHHHHHHHT-SCGGGGG
T ss_pred HHHHHHHHC-CCcchhh
Confidence 999999999 9987653
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=176.23 Aligned_cols=241 Identities=13% Similarity=0.095 Sum_probs=162.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+|+|||+|.||..+|.+|+++| ++|.+|||++++.+.+.+.. ++..+.++.+++ . +|+||++|| ...
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~------g~~~~~~~~~~~-~---~D~vi~~v~-~~~ 69 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL------GVETSATLPELH-S---DDVLILAVK-PQD 69 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT------CCEEESSCCCCC-T---TSEEEECSC-HHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhc------CCEEeCCHHHHh-c---CCEEEEEeC-chh
Confidence 58999999999999999999999 99999999999998887642 256667777666 5 999999999 467
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCC--CHHHHHHHHHHH
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGG--SFEAYNNIRDIL 162 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg--~~ea~~~v~~ll 162 (505)
+++++.++.+ . +.+||+++++... ..+.+.+. .+.+++.+ +.+.+.....|. .+++++ +++.++.++++|
T Consensus 70 ~~~v~~~l~~--~-~~ivv~~~~g~~~--~~l~~~~~-~~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~ 142 (263)
T 1yqg_A 70 MEAACKNIRT--N-GALVLSVAAGLSV--GTLSRYLG-GTRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIM 142 (263)
T ss_dssp HHHHHTTCCC--T-TCEEEECCTTCCH--HHHHHHTT-SCCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcc--C-CCEEEEecCCCCH--HHHHHHcC-CCCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHH
Confidence 8888876655 4 8999999666553 34444443 36678887 667676666676 677777 889999999999
Q ss_pred HHHhcccCCCCceEEeC-CCcchhhhhh--HhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchh-HHh
Q 010637 163 QKVAAQVDDGPCVTYIG-EGGSGNFVKM--VHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESF-LVE 238 (505)
Q Consensus 163 ~~iga~~~~~~~v~~vG-~~G~g~~vK~--v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~-l~~ 238 (505)
+.+| .++ +++ +.......-+ ..+...+..+..+.|+ +.+.| ++++++.+++..... .+. ++.
T Consensus 143 ~~~g------~~~-~~~~~~~~~~~~al~g~~~~~~~~~~~~l~e~---~~~~G-~~~~~~~~~~~~~~~---~~~~~~~ 208 (263)
T 1yqg_A 143 KSVG------LTV-WLDDEEKMHGITGISGSGPAYVFYLLDALQNA---AIRQG-FDMAEARALSLATFK---GAVALAE 208 (263)
T ss_dssp HTTE------EEE-ECSSTTHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHHHHHH---HHHHHHH
T ss_pred HhCC------CEE-EeCChhhccHHHHHHccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHHHHH---HHHHHHH
Confidence 9998 455 787 4210000001 0122234455555666 67788 999998888743322 222 222
Q ss_pred hhh--h-hccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010637 239 ITA--D-IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRY 294 (505)
Q Consensus 239 ~~~--~-il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~ 294 (505)
... + .+.. ..+++++.+...+++ ..+.|++.|++.+ +.+.+
T Consensus 209 ~~~~~~~~~~~-~~~~~~~~~~~~l~~-------------l~~~~~~~~~~~a-~~~~~ 252 (263)
T 1yqg_A 209 QTGEDFEKLQK-NVTSKGGTTHEAVEA-------------FRRHRVAEAISEG-VCACV 252 (263)
T ss_dssp HHCCCHHHHHH-HTCCTTSHHHHHHHH-------------HHHTTHHHHHHHH-HHHHH
T ss_pred hcCCCHHHHHH-hcCCCChhHHHHHHH-------------HHHCCHHHHHHHH-HHHHH
Confidence 111 1 2222 234566666655544 3668899888764 44433
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-18 Score=169.55 Aligned_cols=193 Identities=14% Similarity=0.175 Sum_probs=143.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc-------ccC-C----------CCeeeeCCHHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REG-Q----------LPLTGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~-------~~g-~----------~~i~~~~s~~e~v 67 (505)
+++|+|||+|.||..||..|+++|++|++||+++++++.+.+... ..| . .++..+.++++++
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~ 83 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAV 83 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHh
Confidence 468999999999999999999999999999999998877665310 000 0 0256778888877
Q ss_pred hhcCCCcEEEEEcCCCch-HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH----CCCeEEeCCCCCCHHHhhc
Q 010637 68 LSIQRPRSVIILVKAGSP-VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGVSGGEEGARH 142 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~-v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~pvsGg~~~a~~ 142 (505)
+. +|+||++||+... ...++.++.+.++++.+|++.+++.+. .++.+.+.. .|+||++. +..
T Consensus 84 ~~---aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~--~~la~~~~~~~~~ig~h~~~p--------~~~ 150 (283)
T 4e12_A 84 KD---ADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLP--SDLVGYTGRGDKFLALHFANH--------VWV 150 (283)
T ss_dssp TT---CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH--HHHHHHHSCGGGEEEEEECSS--------TTT
T ss_pred cc---CCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCCCcceEEEccCCC--------ccc
Confidence 76 9999999999744 455668898999999999987777653 344444432 24455542 123
Q ss_pred CC-c-cccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHH
Q 010637 143 GP-S-LMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (505)
Q Consensus 143 G~-~-im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~ 218 (505)
++ . ++.+ .++++++.++++++.++ +.+++++..+.|+.+ |.+. ...++|++.++++.+ ++++
T Consensus 151 ~~lvevv~~~~t~~~~~~~~~~l~~~~g------~~~v~v~~~~~g~i~----nr~~---~~~~~ea~~l~~~g~-~~~~ 216 (283)
T 4e12_A 151 NNTAEVMGTTKTDPEVYQQVVEFASAIG------MVPIELKKEKAGYVL----NSLL---VPLLDAAAELLVDGI-ADPE 216 (283)
T ss_dssp SCEEEEEECTTSCHHHHHHHHHHHHHTT------CEEEECSSCCTTTTH----HHHH---HHHHHHHHHHHHTTS-CCHH
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHcC------CEEEEEecCCCCEEe----hHHH---HHHHHHHHHHHHhCC-CCHH
Confidence 44 3 3333 37899999999999999 889999777777633 4433 346799999999988 9999
Q ss_pred HHHHHHH
Q 010637 219 ELAEIFD 225 (505)
Q Consensus 219 ~i~~v~~ 225 (505)
++++++.
T Consensus 217 ~id~~~~ 223 (283)
T 4e12_A 217 TIDKTWR 223 (283)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999975
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.4e-18 Score=170.31 Aligned_cols=196 Identities=11% Similarity=0.122 Sum_probs=141.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChH--HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTTS--KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G----~~V~v~dr~~~--~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
+|+|+|||+|.||..||.+|+++| ++|++|||+++ +++.+.+.+ ++.+.++.++++. +|+||+|
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G-------~~~~~~~~e~~~~---aDvVila 91 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMG-------VKLTPHNKETVQH---SDVLFLA 91 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHT-------CEEESCHHHHHHH---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcC-------CEEeCChHHHhcc---CCEEEEE
Confidence 468999999999999999999999 89999999986 777776542 5677889888887 9999999
Q ss_pred cCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC--CCeEEeCCCCCCHHHhhcCCccccCCC---HHH
Q 010637 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLGMGVSGGEEGARHGPSLMPGGS---FEA 154 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~i~~pvsGg~~~a~~G~~im~gg~---~ea 154 (505)
||+ ..+++++.++.+.+.++.+||+++++.+.. .+.+.+.+. +..++.+... .+.....|..++++|+ ++.
T Consensus 92 v~~-~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~--~l~~~l~~~~~~~~vv~~~p~-~p~~~~~g~~v~~~g~~~~~~~ 167 (322)
T 2izz_A 92 VKP-HIIPFILDEIGADIEDRHIVVSCAAGVTIS--SIEKKLSAFRPAPRVIRCMTN-TPVVVREGATVYATGTHAQVED 167 (322)
T ss_dssp SCG-GGHHHHHHHHGGGCCTTCEEEECCTTCCHH--HHHHHHHTTSSCCEEEEEECC-GGGGGTCEEEEEEECTTCCHHH
T ss_pred eCH-HHHHHHHHHHHhhcCCCCEEEEeCCCCCHH--HHHHHHhhcCCCCeEEEEeCC-cHHHHcCCeEEEEeCCCCCHHH
Confidence 996 689999999999998999999998887643 445555542 3455554222 2222334446666665 789
Q ss_pred HHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhH--hhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010637 155 YNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMV--HNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDE 226 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v--~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~ 226 (505)
++.++++|+.+| .++ ++.+.....+..+. .+.+.+..+..++|+ +.+.| ++++++.+++.+
T Consensus 168 ~~~v~~ll~~~G------~~~-~~~e~~~~~~~a~~g~gpa~~~~~~eala~a---~~~~G-l~~~~a~~l~~~ 230 (322)
T 2izz_A 168 GRLMEQLLSSVG------FCT-EVEEDLIDAVTGLSGSGPAYAFTALDALADG---GVKMG-LPRRLAVRLGAQ 230 (322)
T ss_dssp HHHHHHHHHTTE------EEE-ECCGGGHHHHHHHTTTHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHHH
T ss_pred HHHHHHHHHhCC------CEE-EeCHHHHHHHHHHhcCHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 999999999999 444 45443333333332 234444455555555 46677 999998888743
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.6e-18 Score=170.04 Aligned_cols=170 Identities=15% Similarity=0.188 Sum_probs=137.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHH-HHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRD-FVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e-~v~~l~~advIil~vp~ 82 (505)
+++|||||+|.||.+||+.|+++|+ +|.+|||++++++.+.+.+.. ...+.++++ +++. +|+||+|||.
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~-----~~~~~~~~~~~~~~---aDvVilavp~ 104 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----DEGTTSIAKVEDFS---PDFVMLSSPV 104 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----SEEESCTTGGGGGC---CSEEEECSCG
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCc-----chhcCCHHHHhhcc---CCEEEEeCCH
Confidence 4689999999999999999999999 999999999998887765421 145678887 7776 9999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCC----HHHhh----cCC-cccc---C
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGG----EEGAR----HGP-SLMP---G 149 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg----~~~a~----~G~-~im~---g 149 (505)
. .+.+++.++.+.++++.+|+|++++.......+.+.+.. .|++ .|++|+ +..+. .|. .+++ +
T Consensus 105 ~-~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~---~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~ 180 (314)
T 3ggo_A 105 R-TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKK 180 (314)
T ss_dssp G-GHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTT
T ss_pred H-HHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC---CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCC
Confidence 6 688899999999999999999999887666666666544 6777 588874 33333 465 4444 4
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhh
Q 010637 150 GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG 193 (505)
Q Consensus 150 g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~ 193 (505)
+++++++.++++|+.+| ..++++++......+.++...
T Consensus 181 ~~~~~~~~v~~l~~~~G------~~v~~~~~~~hD~~~a~~s~l 218 (314)
T 3ggo_A 181 TDKKRLKLVKRVWEDVG------GVVEYMSPELHDYVFGVVSHL 218 (314)
T ss_dssp SCHHHHHHHHHHHHHTT------CEEEECCHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHcC------CEEEEcCHHHHHHHHHHHHHH
Confidence 68899999999999999 678999988888888877644
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-18 Score=175.26 Aligned_cols=278 Identities=10% Similarity=-0.001 Sum_probs=174.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-------CcEEEEeCChH-----HHHHHHHhhccc----C---CCCeeeeCCHHHHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG-------FPISVYNRTTS-----KVDETLDRAHRE----G---QLPLTGHYTPRDFV 67 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G-------~~V~v~dr~~~-----~~~~l~~~~~~~----g---~~~i~~~~s~~e~v 67 (505)
|||+|||+|.||..+|.+|+++| ++|++|||+++ +.+.+.+.+... + ..++..+.++++++
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAA 88 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHHH
Confidence 58999999999999999999999 99999999998 887776532110 0 00356678888877
Q ss_pred hhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCc---hhHHHHHHHHHHC-C--CeEEeCCCCCCHHHhh
Q 010637 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY---LNTERRIHEASQK-G--LLYLGMGVSGGEEGAR 141 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~---~~t~~~~~~l~~~-g--i~~i~~pvsGg~~~a~ 141 (505)
+. +|+||++||+ ..++++++++.+.+.++++||+++|+.. ...+.+.+.+.+. + ...+..|... ....
T Consensus 89 ~~---aD~Vilav~~-~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a--~~v~ 162 (354)
T 1x0v_A 89 ED---ADILIFVVPH-QFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIA--SEVA 162 (354)
T ss_dssp TT---CSEEEECCCG-GGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCCEEEEECSCCH--HHHH
T ss_pred cC---CCEEEEeCCH-HHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCCEEEEECCCcH--HHHH
Confidence 76 9999999998 5899999999999999999999998653 2122222222221 3 2223333221 1122
Q ss_pred cCC---ccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhh-----------------hhHhhhHHHhHhhH
Q 010637 142 HGP---SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV-----------------KMVHNGIEYGDMQL 201 (505)
Q Consensus 142 ~G~---~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~v-----------------K~v~N~i~~~~~~~ 201 (505)
.|. .++.+++++..++++++|+..+ ..+++.++.-...+. |+.+|........+
T Consensus 163 ~g~~~~~~~~~~~~~~~~~v~~ll~~~g------~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~~ 236 (354)
T 1x0v_A 163 DEKFCETTIGCKDPAQGQLLKELMQTPN------FRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLG 236 (354)
T ss_dssp TTCCEEEEEECSSHHHHHHHHHHHCBTT------EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hcCCceEEEEECCHHHHHHHHHHhCCCC------EEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHH
Confidence 342 3445678888999999999887 456665553222222 45578888888999
Q ss_pred HHHHHHHHHHhCCC---CHHHHHH------HHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhh--CCCchH-
Q 010637 202 ISEAYDVLKHVGGL---SNAELAE------IFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKT--GMKGTG- 269 (505)
Q Consensus 202 i~Ea~~l~~~~g~l---~~~~i~~------v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~--~~kgtg- 269 (505)
+.|+..++++.| + +++++.+ .+..-.. ..++ .....+... .+ .++.+.+++ +++-++
T Consensus 237 ~~E~~~la~a~G-~~~~~~~~~~~~~g~~d~~~~~~~--~~~~--~~~~~~~~~--~~----~~~~~~~~~~~g~~~E~~ 305 (354)
T 1x0v_A 237 LMEMIAFAKLFC-SGPVSSATFLESCGVADLITTCYG--GRNR--KVAEAFART--GK----SIEQLEKELLNGQKLQGP 305 (354)
T ss_dssp HHHHHHHHHHHS-SSCCCGGGGGSTTTHHHHHHHHHH--CHHH--HHHHHHHHH--CC----CHHHHHHHHSTTCCCHHH
T ss_pred HHHHHHHHHHhc-CCCCCcccccccchHHHHHHhhcc--cccH--HHHHHHHhc--CC----CHHHHHHhhcCCcEeehH
Confidence 999999999998 8 7766532 2211000 1111 111111110 01 112222111 111111
Q ss_pred ---HHHHHHHHHcCC--CcchHHHHHHHHHHhcchHHHHHHHHHh
Q 010637 270 ---KWTVQQAAELSV--AAPTIAASLDCRYLSGLKEEREKAAKVL 309 (505)
Q Consensus 270 ---~~~~~~A~~~gv--p~p~i~~av~~r~~s~~~~~r~~~~~~~ 309 (505)
..+++.|+++|+ |+|+.... .+.+...++.+..+..++
T Consensus 306 ~~~g~v~~~a~~~gv~~~~P~~~~v--~~~~~~~~~~~~~~~~l~ 348 (354)
T 1x0v_A 306 ETARELYSILQHKGLVDKFPLFMAV--YKVCYEGQPVGEFIHCLQ 348 (354)
T ss_dssp HHHHHHHHHHHHHTCGGGSHHHHHH--HHHHHSCCCGGGTHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHH--HHHHhCCCCHHHHHHHHH
Confidence 157789999999 99998853 455555555555555544
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=162.24 Aligned_cols=193 Identities=13% Similarity=0.134 Sum_probs=138.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+|||+|||+|.||..|+.+|+++|+ +|.+|||++++.+.+.+.. ++..+.++.++++. +|+||+|||
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~------g~~~~~~~~e~~~~---aDvVilav~ 72 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY------GLTTTTDNNEVAKN---ADILILSIK 72 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH------CCEECSCHHHHHHH---CSEEEECSC
T ss_pred CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh------CCEEeCChHHHHHh---CCEEEEEeC
Confidence 4689999999999999999999999 9999999999998887642 36778899999887 999999998
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe----CCCCCCHHHhhcCC-cccc--CCCHHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG----MGVSGGEEGARHGP-SLMP--GGSFEA 154 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~----~pvsGg~~~a~~G~-~im~--gg~~ea 154 (505)
+ ..++++++++.+.+.++++||..+++.... .+.+.+. .+..++. .|++++ .|. .+++ +++++.
T Consensus 73 ~-~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~--~l~~~~~-~~~~~v~~~p~~p~~~~-----~g~~~~~~~~~~~~~~ 143 (247)
T 3gt0_A 73 P-DLYASIINEIKEIIKNDAIIVTIAAGKSIE--STENAFN-KKVKVVRVMPNTPALVG-----EGMSALCPNEMVTEKD 143 (247)
T ss_dssp T-TTHHHHC---CCSSCTTCEEEECSCCSCHH--HHHHHHC-SCCEEEEEECCGGGGGT-----CEEEEEEECTTCCHHH
T ss_pred H-HHHHHHHHHHHhhcCCCCEEEEecCCCCHH--HHHHHhC-CCCcEEEEeCChHHHHc-----CceEEEEeCCCCCHHH
Confidence 7 478999999999999999999766665432 3444443 2344443 233332 344 4444 478999
Q ss_pred HHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHH-HHHhCCCCHHHHHHHHHH
Q 010637 155 YNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDV-LKHVGGLSNAELAEIFDE 226 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l-~~~~g~l~~~~i~~v~~~ 226 (505)
++.++++|+.+| . ++++++.-...++-+...+ -+.+..+.|++.. +.+.| +++++..+++.+
T Consensus 144 ~~~~~~l~~~~G------~-~~~~~e~~~d~~~a~~g~g--pa~~~~~~eal~~a~~~~G-l~~~~a~~~~~~ 206 (247)
T 3gt0_A 144 LEDVLNIFNSFG------Q-TEIVSEKLMDVVTSVSGSS--PAYVYMIIEAMADAAVLDG-MPRNQAYKFAAQ 206 (247)
T ss_dssp HHHHHHHHGGGE------E-EEECCGGGHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHH
T ss_pred HHHHHHHHHhCC------C-EEEeCHHHccHHHHHhccH--HHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 999999999999 4 6677543222222222211 1344556666666 67788 999999998743
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=175.03 Aligned_cols=193 Identities=11% Similarity=0.108 Sum_probs=140.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHH--------HHHHhhcccC------CCCeeeeCCHHHHHhhcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVD--------ETLDRAHREG------QLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~--------~l~~~~~~~g------~~~i~~~~s~~e~v~~l~ 71 (505)
+++|+|||+|.||.+||.+|+++|++|++||+++++.. .+.+.+.... -.+++.++++++ ++.
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~a-l~~-- 130 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFHK-LSN-- 130 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGGG-CTT--
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHHH-Hcc--
Confidence 46899999999999999999999999999999998432 2222221000 004677888753 343
Q ss_pred CCcEEEEEcCCCchHH-HHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH----CCCeEEeCCCCCCHHHhhcCC--
Q 010637 72 RPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGVSGGEEGARHGP-- 144 (505)
Q Consensus 72 ~advIil~vp~~~~v~-~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~pvsGg~~~a~~G~-- 144 (505)
+|+||+|||++..++ .++.++.+.++++.||++.+++.+.+ ++++.+.. .|+||++ |+. ..+
T Consensus 131 -aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~--~ia~~~~~p~r~iG~Hffn-Pv~-------~m~Lv 199 (460)
T 3k6j_A 131 -CDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLN--EISSVLRDPSNLVGIHFFN-PAN-------VIRLV 199 (460)
T ss_dssp -CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH--HHHTTSSSGGGEEEEECCS-STT-------TCCEE
T ss_pred -CCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHH--HHHHhccCCcceEEEEecc-hhh-------hCCEE
Confidence 999999999986665 45588999999999998776665532 33333321 2566666 433 223
Q ss_pred ccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHH
Q 010637 145 SLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 145 ~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
.+++| +++++++.+.++++.+| +.++++++ +.|. +.|.+.. ..++|++.++++.| ++++++++
T Consensus 200 EIv~g~~Ts~e~~~~~~~l~~~lG------k~~v~v~d-~pGf----i~Nril~---~~~~EA~~l~~~~G-a~~e~ID~ 264 (460)
T 3k6j_A 200 EIIYGSHTSSQAIATAFQACESIK------KLPVLVGN-CKSF----VFNRLLH---VYFDQSQKLMYEYG-YLPHQIDK 264 (460)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHTT------CEEEEESS-CCHH----HHHHHHH---HHHHHHHHHHHTSC-CCHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhC------CEEEEEec-ccHH----HHHHHHH---HHHHHHHHHHHHcC-CCHHHHHH
Confidence 45666 48999999999999999 88999986 6664 3455443 35799999998888 99999999
Q ss_pred HHHHh
Q 010637 223 IFDEW 227 (505)
Q Consensus 223 v~~~~ 227 (505)
++..+
T Consensus 265 a~~~~ 269 (460)
T 3k6j_A 265 IITNF 269 (460)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 98643
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.9e-18 Score=179.10 Aligned_cols=189 Identities=16% Similarity=0.173 Sum_probs=140.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh-------cccCCC----------CeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQL----------PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~i~~~~s~~e~v~ 68 (505)
+++|||||+|.||.+||.+|+++|++|++||+++++++.+.+.. ...|.. +++.++++++ ++
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHA-LA 83 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGG-GG
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHH-hc
Confidence 46899999999999999999999999999999999988765420 001100 3567778764 44
Q ss_pred hcCCCcEEEEEcCCCchHH-HHHHHHHhcCCCCcEEEe-cCCCCchhHHHHHHHHH----HCCCeEEe-CCCCCCHHHhh
Q 010637 69 SIQRPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIID-GGNEWYLNTERRIHEAS----QKGLLYLG-MGVSGGEEGAR 141 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~-~vl~~l~~~l~~g~iIId-~st~~~~~t~~~~~~l~----~~gi~~i~-~pvsGg~~~a~ 141 (505)
. +|+||++||+...++ .++.++.+.++++.+|++ +|+..+ + ++.+.+. -.|+||++ +|++
T Consensus 84 ~---aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i-~--~ia~~~~~p~~~ig~hf~~Pa~v~------- 150 (483)
T 3mog_A 84 A---ADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISI-T--AIAAEIKNPERVAGLHFFNPAPVM------- 150 (483)
T ss_dssp G---CSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH-H--HHTTTSSSGGGEEEEEECSSTTTC-------
T ss_pred C---CCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCH-H--HHHHHccCccceEEeeecChhhhC-------
Confidence 4 999999999986664 667889999999999965 555443 2 2333222 12677776 3443
Q ss_pred cCC-ccccCC---CHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCH
Q 010637 142 HGP-SLMPGG---SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (505)
Q Consensus 142 ~G~-~im~gg---~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~ 217 (505)
+ ..+++| ++++++.+.++++.+| +.++++++. .| +++||.+.. .++|++.++++.+ .|+
T Consensus 151 --~Lvevv~g~~Ts~e~~~~~~~l~~~lG------k~~v~v~d~-~G---fi~Nr~l~~----~~~Ea~~l~~~g~-~~~ 213 (483)
T 3mog_A 151 --KLVEVVSGLATAAEVVEQLCELTLSWG------KQPVRCHST-PG---FIVNRVARP----YYSEAWRALEEQV-AAP 213 (483)
T ss_dssp --CEEEEEECSSCCHHHHHHHHHHHHHTT------CEEEEEESC-TT---TTHHHHTHH----HHHHHHHHHHTTC-SCH
T ss_pred --CeEEEecCCCCCHHHHHHHHHHHHHhC------CEEEEEecc-Cc---chHHHHHHH----HHHHHHHHHHhCC-CCH
Confidence 3 445555 8999999999999999 889999863 34 556554433 6799999999988 999
Q ss_pred HHHHHHHH
Q 010637 218 AELAEIFD 225 (505)
Q Consensus 218 ~~i~~v~~ 225 (505)
++++++++
T Consensus 214 ~~id~a~~ 221 (483)
T 3mog_A 214 EVIDAALR 221 (483)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999986
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-17 Score=163.81 Aligned_cols=192 Identities=11% Similarity=0.173 Sum_probs=138.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh-------cccCC---------------CCeeeeCCH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQ---------------LPLTGHYTP 63 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~---------------~~i~~~~s~ 63 (505)
+++|+|||+|.||.+||..|+++||+|++|||++++++...+.. ...|. .+++.++++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 94 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 94 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCH
Confidence 46899999999999999999999999999999999877643210 00000 036677888
Q ss_pred HHHHhhcCCCcEEEEEcCCCchH-HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHH----HCCCeEEeCCCCCCHH
Q 010637 64 RDFVLSIQRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS----QKGLLYLGMGVSGGEE 138 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v-~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~----~~gi~~i~~pvsGg~~ 138 (505)
++.++. +|+||++||+...+ +.++.++.+.+.++.+|++.+++.+.. ++.+.+. -.|.||++ |+.
T Consensus 95 ~~~~~~---aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~--~l~~~~~~~~~~~g~h~~~-P~~---- 164 (302)
T 1f0y_A 95 ASVVHS---TDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT--SIANATTRQDRFAGLHFFN-PVP---- 164 (302)
T ss_dssp HHHTTS---CSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH--HHHTTSSCGGGEEEEEECS-STT----
T ss_pred HHhhcC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH--HHHHhcCCcccEEEEecCC-Ccc----
Confidence 877666 99999999997554 456688888888899998766665433 3333222 12455554 321
Q ss_pred HhhcCC--ccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCC
Q 010637 139 GARHGP--SLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (505)
Q Consensus 139 ~a~~G~--~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~ 214 (505)
.++ .++.| +++++++.+.++++.+| +.++++++. .| ++++|.+ ..+++|++.++++.+
T Consensus 165 ---~~~~~~i~~g~~~~~e~~~~~~~l~~~~G------~~~v~~~~~-~g---~i~nr~l----~~~~~Ea~~l~~~g~- 226 (302)
T 1f0y_A 165 ---VMKLVEVIKTPMTSQKTFESLVDFSKALG------KHPVSCKDT-PG---FIVNRLL----VPYLMEAIRLYERGD- 226 (302)
T ss_dssp ---TCCEEEEECCTTCCHHHHHHHHHHHHHTT------CEEEEECSC-TT---TTHHHHH----HHHHHHHHHHHHTTS-
T ss_pred ---cCceEEEeCCCCCCHHHHHHHHHHHHHcC------CceEEecCc-cc---ccHHHHH----HHHHHHHHHHHHcCC-
Confidence 233 44444 38999999999999999 778888752 34 3444433 356799999999988
Q ss_pred CCHHHHHHHHH
Q 010637 215 LSNAELAEIFD 225 (505)
Q Consensus 215 l~~~~i~~v~~ 225 (505)
+++++++.++.
T Consensus 227 ~~~~~id~~~~ 237 (302)
T 1f0y_A 227 ASKEDIDTAMK 237 (302)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999999874
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-17 Score=161.87 Aligned_cols=176 Identities=15% Similarity=0.177 Sum_probs=138.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh-hcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL-SIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~-~l~~advIil~vp~ 82 (505)
|++|+|||+|.||..+|..|+++|+ +|.+|||++++.+.+.+.+.. ...+.+++++++ . +|+||++||+
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~---aDvVilavp~ 72 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----DEGTTSIAKVEDFS---PDFVMLSSPV 72 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----SEEESCGGGGGGTC---CSEEEECSCH
T ss_pred CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCc-----ccccCCHHHHhcCC---CCEEEEcCCH
Confidence 3689999999999999999999999 999999999988877654321 124567777766 6 9999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCC----HHHhh----cCC-cccc---C
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGG----EEGAR----HGP-SLMP---G 149 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg----~~~a~----~G~-~im~---g 149 (505)
. .+.+++.++.+.+.++.+|+++++........+.+.+.+. +++ .|+.|+ +..+. .|. ++++ +
T Consensus 73 ~-~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~---~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~ 148 (281)
T 2g5c_A 73 R-TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKR---FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKK 148 (281)
T ss_dssp H-HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG---EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSS
T ss_pred H-HHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhcccc---ceeeccccCCccCChhhhhhHHhCCCCEEEecCCC
Confidence 5 7788999999999999999999998876666666666542 655 465553 33332 566 5555 6
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHh
Q 010637 150 GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDM 199 (505)
Q Consensus 150 g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~ 199 (505)
++++.++.++++|+.+| ..++++++...+.++|++.|+..+...
T Consensus 149 ~~~~~~~~v~~l~~~~g------~~~~~~~~~~~d~~~~~~~~~~~~~a~ 192 (281)
T 2g5c_A 149 TDKKRLKLVKRVWEDVG------GVVEYMSPELHDYVFGVVSHLPHAVAF 192 (281)
T ss_dssp SCHHHHHHHHHHHHHTT------CEEEECCHHHHHHHHHHHTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC------CEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999 678888887778999999888765433
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-17 Score=167.37 Aligned_cols=274 Identities=15% Similarity=0.103 Sum_probs=161.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhccc--C-CC----Ce-eeeCCHHHHHhhcCCCcEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE--G-QL----PL-TGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~--g-~~----~i-~~~~s~~e~v~~l~~advIi 77 (505)
+|||+|||+|.||..+|.+|+++|++|++|||++++.+.+.+.+... + .. ++ ....++++++.. +|+||
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi 80 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD---ADVIL 80 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT---CSEEE
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhc---CCEEE
Confidence 46999999999999999999999999999999999998887653100 0 00 11 356788887765 99999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCC---CeEEe---CCCCCCHHHh---h----cCC
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG---LLYLG---MGVSGGEEGA---R----HGP 144 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~g---i~~i~---~pvsGg~~~a---~----~G~ 144 (505)
+++|+. ..+++++.+.+.+.++++||++.+..+ .+.++.+.+.+.+ +.|++ .|+++...+. . .+.
T Consensus 81 ~~v~~~-~~~~~~~~l~~~l~~~~~vv~~~~~~~-~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~~ 158 (359)
T 1bg6_A 81 IVVPAI-HHASIAANIASYISEGQLIILNPGATG-GALEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGA 158 (359)
T ss_dssp ECSCGG-GHHHHHHHHGGGCCTTCEEEESSCCSS-HHHHHHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEECSC
T ss_pred EeCCch-HHHHHHHHHHHhCCCCCEEEEcCCCch-HHHHHHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEeecc
Confidence 999996 568899999999999999999855333 3444555566654 55655 4555432211 0 011
Q ss_pred c-c--cc-CCCHHHHHHHHHHHHHHhcccCCC------C---ceEEeCCC--cchhhhh---hH------hhhHHHhHhh
Q 010637 145 S-L--MP-GGSFEAYNNIRDILQKVAAQVDDG------P---CVTYIGEG--GSGNFVK---MV------HNGIEYGDMQ 200 (505)
Q Consensus 145 ~-i--m~-gg~~ea~~~v~~ll~~iga~~~~~------~---~v~~vG~~--G~g~~vK---~v------~N~i~~~~~~ 200 (505)
. + .. +++++.++.++++|..+. .... + ++++.+.. +.+...| +. .+.....+.+
T Consensus 159 ~~~g~~~~~~~~~~~~~l~~~~~~~~--~~~di~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 1bg6_A 159 MDFACLPAAKAGWALEQIGSVLPQYV--AVENVLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSLAEK 236 (359)
T ss_dssp EEEEEESGGGHHHHHHHHTTTCTTEE--ECSCHHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHHHHHHHH
T ss_pred eEEEeccccccHHHHHHHHHHhhhcE--EcCChHhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHHHHHHHH
Confidence 0 0 01 345556777777775432 0000 0 11111110 3333322 11 2233466788
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHh--hhhhhccccccCCCchhHH--HHHhhhCCCchHHHHHHHH
Q 010637 201 LISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVE--ITADIFKVKDEYGEGELVD--KILDKTGMKGTGKWTVQQA 276 (505)
Q Consensus 201 ~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~--~~~~il~~~~~~~~~~~l~--~i~~~~~~kgtg~~~~~~A 276 (505)
++.|+..++++.| ++++++.+.+.........+ +.+ .+..+++ |...+ ..++ .+.+|+. -+.| ..++.|
T Consensus 237 ~~~E~~~va~a~G-~~~~~~~~~~~~~~~~~~~~-l~~~~~~~sm~~--d~~~~-~e~~~~~~~~D~~-~~~g-~~~~~a 309 (359)
T 1bg6_A 237 VDAERIAIAKAFD-LNVPSVCEWYKESYGQSPAT-IYEAVQGNPAYR--GIAGP-INLNTRYFFEDVS-TGLV-PLSELG 309 (359)
T ss_dssp HHHHHHHHHHTTT-CCCCCHHHHC-------CCS-HHHHHHTCGGGT--TCBCC-SSSCCHHHHHHHH-TTHH-HHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCcHHHHHHHHhCCCccc-HHHHHhcchhhc--CCCCC-CCCCccceecCcC-ccHH-HHHHHH
Confidence 9999999999998 98876666653221111111 000 1122221 11111 2334 5555541 0123 688999
Q ss_pred HHcCCCcchHHHHHHHHH
Q 010637 277 AELSVAAPTIAASLDCRY 294 (505)
Q Consensus 277 ~~~gvp~p~i~~av~~r~ 294 (505)
+++|+|+|+.... ...+
T Consensus 310 ~~~gv~~P~~~~l-~~~~ 326 (359)
T 1bg6_A 310 RAVNVPTPLIDAV-LDLI 326 (359)
T ss_dssp HHTTCCCHHHHHH-HHHH
T ss_pred HHcCCCchHHHHH-HHHH
Confidence 9999999998864 3433
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.4e-17 Score=154.48 Aligned_cols=177 Identities=14% Similarity=0.078 Sum_probs=137.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc---cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR---EGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~---~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|||+||| +|.||..++..|+++|++|.++||++++.+.+.+.... .+ .+. ..+++++++. +|+||+++|+
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~---~D~Vi~~~~~ 74 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDA--SIT-GMKNEDAAEA---CDIAVLTIPW 74 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSC--CEE-EEEHHHHHHH---CSEEEECSCH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccC--CCC-hhhHHHHHhc---CCEEEEeCCh
Confidence 5899999 99999999999999999999999999988877654210 00 244 4577787777 9999999997
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCch------------hHHHHHHHHHHCCCeEEeC--CCCCCHHHh--hcCC-c
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYL------------NTERRIHEASQKGLLYLGM--GVSGGEEGA--RHGP-S 145 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~------------~t~~~~~~l~~~gi~~i~~--pvsGg~~~a--~~G~-~ 145 (505)
. .+++++.++.+.+ ++.+|+|++++... ..+++.+.+. +.+++.+ |+.+..... ..|. .
T Consensus 75 ~-~~~~~~~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~ 150 (212)
T 1jay_A 75 E-HAIDTARDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE--SEKVVSALHTIPAARFANLDEKFDWD 150 (212)
T ss_dssp H-HHHHHHHHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT--CSCEEECCTTCCHHHHHCTTCCCCEE
T ss_pred h-hHHHHHHHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC--CCeEEEEccchHHHHhhCcCCCCCcc
Confidence 4 6788888887777 58999999996542 2456666554 4678887 666555443 4455 6
Q ss_pred cccCCC-HHHHHHHHHHHHHH-hcccCCCCceEEeCCCcchhhhhhHhhhHHHhHh
Q 010637 146 LMPGGS-FEAYNNIRDILQKV-AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDM 199 (505)
Q Consensus 146 im~gg~-~ea~~~v~~ll~~i-ga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~ 199 (505)
++++|+ +++++.++++|+.+ | .+++++++.+.++.+|++.|.+.+...
T Consensus 151 ~~~~g~~~~~~~~v~~l~~~~~G------~~~~~~~~~~~a~~~k~~~~~~~~~~~ 200 (212)
T 1jay_A 151 VPVCGDDDESKKVVMSLISEIDG------LRPLDAGPLSNSRLVESLTPLILNIMR 200 (212)
T ss_dssp EEEEESCHHHHHHHHHHHHHSTT------EEEEEEESGGGHHHHHTHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHHcCC------CCceeccchhHHHHhcchHHHHHHHHH
Confidence 677775 89999999999999 9 678899999999999999988765443
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=156.42 Aligned_cols=185 Identities=12% Similarity=0.108 Sum_probs=133.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G----~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+|+|+|||+|.||..||.+|+++| ++|.+|||++++ . ++..+.++.++++. +|+||+|||
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~-------g~~~~~~~~~~~~~---~D~vi~~v~ 67 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------T-------TLNYMSSNEELARH---CDIIVCAVK 67 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------S-------SSEECSCHHHHHHH---CSEEEECSC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------C-------ceEEeCCHHHHHhc---CCEEEEEeC
Confidence 468999999999999999999999 799999999876 1 25677889888887 999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC--CCeEEe-CCCCCCHHHhhcCCccccCC---CHHHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLG-MGVSGGEEGARHGPSLMPGG---SFEAY 155 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~i~-~pvsGg~~~a~~G~~im~gg---~~ea~ 155 (505)
+ ..+++++.++.+.+ ++.+||..+++.... .+.+.+... .++++. .|+.+ ..|.++++++ +++.+
T Consensus 68 ~-~~~~~v~~~l~~~l-~~~~vv~~~~gi~~~--~l~~~~~~~~~~v~~~p~~p~~~-----~~g~~~~~~~~~~~~~~~ 138 (262)
T 2rcy_A 68 P-DIAGSVLNNIKPYL-SSKLLISICGGLNIG--KLEEMVGSENKIVWVMPNTPCLV-----GEGSFIYCSNKNVNSTDK 138 (262)
T ss_dssp T-TTHHHHHHHSGGGC-TTCEEEECCSSCCHH--HHHHHHCTTSEEEEEECCGGGGG-----TCEEEEEEECTTCCHHHH
T ss_pred H-HHHHHHHHHHHHhc-CCCEEEEECCCCCHH--HHHHHhCCCCcEEEECCChHHHH-----cCCeEEEEeCCCCCHHHH
Confidence 7 48999999998888 455555544444332 333444331 234442 23332 2345444444 78899
Q ss_pred HHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHh--hhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010637 156 NNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVH--NGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDE 226 (505)
Q Consensus 156 ~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~--N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~ 226 (505)
+.++++|+.+| . ++++++......+++.. |.+.+..+..+.|+ +.+.| +++++..+++..
T Consensus 139 ~~~~~ll~~~G------~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~al~~~---~~~~G-l~~~~~~~~~~~ 200 (262)
T 2rcy_A 139 KYVNDIFNSCG------I-IHEIKEKDMDIATAISGCGPAYVYLFIESLIDA---GVKNG-LSRELSKNLVLQ 200 (262)
T ss_dssp HHHHHHHHTSE------E-EEECCGGGHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHHH
T ss_pred HHHHHHHHhCC------C-EEEeCHHHccHHHHHHccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 99999999999 5 88888766666666543 56666666666665 56777 999888877643
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-16 Score=157.72 Aligned_cols=199 Identities=15% Similarity=0.200 Sum_probs=142.3
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh-----------hcccCCC-------CeeeeCC
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-----------AHREGQL-------PLTGHYT 62 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-----------~~~~g~~-------~i~~~~s 62 (505)
|+.+...+|+|||+|.||.++|..++.+|++|.+||++++.++...+. +...+.. ++..+++
T Consensus 1 Ma~p~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~ 80 (319)
T 3ado_A 1 MASPAAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTN 80 (319)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECC
T ss_pred CCCCCCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccc
Confidence 555556789999999999999999999999999999999875543321 1100000 4677888
Q ss_pred HHHHHhhcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHH--HC--CCeEEeCC-CCCC
Q 010637 63 PRDFVLSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QK--GLLYLGMG-VSGG 136 (505)
Q Consensus 63 ~~e~v~~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~--~~--gi~~i~~p-vsGg 136 (505)
+++.++. +|+|+.+||+...++.-+ .+|.+.++++.||...|++.+.+ ++++.+. ++ |.||+.+| +..-
T Consensus 81 l~~a~~~---ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is--~ia~~~~~p~r~ig~HffNP~~~m~L 155 (319)
T 3ado_A 81 LAEAVEG---VVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPS--KLFTGLAHVKQCIVAHPVNPPYYIPL 155 (319)
T ss_dssp HHHHTTT---EEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHH--HHHTTCTTGGGEEEEEECSSTTTCCE
T ss_pred hHhHhcc---CcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccch--hhhhhccCCCcEEEecCCCCccccch
Confidence 8887776 999999999998887554 78888888888887766665543 3333332 22 67888764 2222
Q ss_pred HHHhhcCCccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCC
Q 010637 137 EEGARHGPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (505)
Q Consensus 137 ~~~a~~G~~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~ 214 (505)
.+ ++.| .++++++.+..+++.++ +.++.+-.+..|+.+ |.+. ..++.|++.++++++
T Consensus 156 VE-------iv~g~~Ts~~~~~~~~~~~~~~g------k~pv~v~kd~pGFi~----NRl~---~~~~~EA~~lv~eGv- 214 (319)
T 3ado_A 156 VE-------LVPHPETSPATVDRTHALMRKIG------QSPVRVLKEIDGFVL----NRLQ---YAIISEAWRLVEEGI- 214 (319)
T ss_dssp EE-------EEECTTCCHHHHHHHHHHHHHTT------CEEEECSSCCTTTTH----HHHH---HHHHHHHHHHHHTTS-
T ss_pred HH-------hcCCCCCcHHHHHHHHHHHHHhC------CccCCcCCCCCCEeH----HHHH---HHHHHHHHHHHHhCC-
Confidence 22 3333 58899999999999999 777766555666655 5554 555699999999988
Q ss_pred CCHHHHHHHHH
Q 010637 215 LSNAELAEIFD 225 (505)
Q Consensus 215 l~~~~i~~v~~ 225 (505)
.++++++.++.
T Consensus 215 as~edID~~~~ 225 (319)
T 3ado_A 215 VSPSDLDLVMS 225 (319)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999999974
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-15 Score=149.07 Aligned_cols=243 Identities=16% Similarity=0.136 Sum_probs=160.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC---cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+|+|||||+|.||.+|+.+|+++|+ +|.+|||++++.+++.+.. ++..+.+..++++. +|+||++||+
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~------gi~~~~~~~~~~~~---aDvVilav~p 73 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC------GVHTTQDNRQGALN---ADVVVLAVKP 73 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT------CCEEESCHHHHHSS---CSEEEECSCG
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc------CCEEeCChHHHHhc---CCeEEEEeCH
Confidence 4689999999999999999999999 9999999999999887652 36778899888877 9999999988
Q ss_pred CchHHHHHHHHHhc-CCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHHHhhcCCc-cccC--CCHHHHHH
Q 010637 83 GSPVDQTIAALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGPS-LMPG--GSFEAYNN 157 (505)
Q Consensus 83 ~~~v~~vl~~l~~~-l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~~a~~G~~-im~g--g~~ea~~~ 157 (505)
..++++++++.+. ++++.+||+.+++.+. ..+.+.+.. +..++.+ |. .+.....|.+ +.++ .+++.++.
T Consensus 74 -~~~~~vl~~l~~~~l~~~~iiiS~~agi~~--~~l~~~l~~-~~~vvr~mPn--~p~~v~~g~~~l~~~~~~~~~~~~~ 147 (280)
T 3tri_A 74 -HQIKMVCEELKDILSETKILVISLAVGVTT--PLIEKWLGK-ASRIVRAMPN--TPSSVRAGATGLFANETVDKDQKNL 147 (280)
T ss_dssp -GGHHHHHHHHHHHHHTTTCEEEECCTTCCH--HHHHHHHTC-CSSEEEEECC--GGGGGTCEEEEEECCTTSCHHHHHH
T ss_pred -HHHHHHHHHHHhhccCCCeEEEEecCCCCH--HHHHHHcCC-CCeEEEEecC--ChHHhcCccEEEEeCCCCCHHHHHH
Confidence 5899999999998 8888899988777653 344455442 3444442 32 1222233333 3333 46889999
Q ss_pred HHHHHHHHhcccCCCCceEEeCC-CcchhhhhhH--hhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcch
Q 010637 158 IRDILQKVAAQVDDGPCVTYIGE-GGSGNFVKMV--HNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELES 234 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~vG~-~G~g~~vK~v--~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s 234 (505)
++++|+.+| + +.++.+ .....+.-+. -+.+.+..+..+.|+ +.+.| +++++..++..+.-.|.
T Consensus 148 v~~l~~~iG------~-~~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a---~v~~G-l~~~~a~~l~~~t~~G~--- 213 (280)
T 3tri_A 148 AESIMRAVG------L-VIWVSSEDQIEKIAALSGSGPAYIFLIMEALQEA---AEQLG-LTKETAELLTEQTVLGA--- 213 (280)
T ss_dssp HHHHHGGGE------E-EEECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHCC------C-eEEECCHHHhhHHHHHhccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHHHHHHH---
Confidence 999999999 4 556643 2111111111 234555566666666 45777 99999998875432222
Q ss_pred hHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHH
Q 010637 235 FLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIA 287 (505)
Q Consensus 235 ~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~ 287 (505)
..++...+ ..|.-+.| ......||---.+..-.+.|++..++.
T Consensus 214 ------a~~~~~~~-~~p~~l~~---~v~spgGtT~~~l~~le~~g~~~~~~~ 256 (280)
T 3tri_A 214 ------ARMALETE-QSVVQLRQ---FVTSPGGTTEQAIKVLESGNLRELFIK 256 (280)
T ss_dssp ------HHHHHTCS-SCHHHHHH---HHCCTTSHHHHHHHHHHTTCHHHHHHH
T ss_pred ------HHHHHhcC-CCHHHHHH---hccCCChHHHHHHHHHHHCChHHHHHH
Confidence 12222211 12221222 233344666556666677788755544
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=162.61 Aligned_cols=173 Identities=13% Similarity=0.146 Sum_probs=134.7
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhh-cCCCcEEEEEcCC
Q 010637 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLS-IQRPRSVIILVKA 82 (505)
Q Consensus 4 ~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~-l~~advIil~vp~ 82 (505)
...++|||||+|.||.+||++|.++|++|++|||++++.+.+.+.+ +..+.+++++++. ++.+|+||+|||.
T Consensus 6 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G-------~~~~~~~~e~~~~a~~~aDlVilavP~ 78 (341)
T 3ktd_A 6 DISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEG-------FDVSADLEATLQRAAAEDALIVLAVPM 78 (341)
T ss_dssp CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTT-------CCEESCHHHHHHHHHHTTCEEEECSCH
T ss_pred CCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeeeCCHHHHHHhcccCCCEEEEeCCH
Confidence 3457899999999999999999999999999999999888776543 4567888887653 1237999999997
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCH-HHhh-------cCC-ccccCC--
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGE-EGAR-------HGP-SLMPGG-- 150 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~-~~a~-------~G~-~im~gg-- 150 (505)
..+..+++++.+. .++.+|+|++++.....+...+.+. +.+|++ .|++|++ .+.. .|. .+++.+
T Consensus 79 -~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~ 154 (341)
T 3ktd_A 79 -TAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQL 154 (341)
T ss_dssp -HHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGG
T ss_pred -HHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCC
Confidence 4788999999886 7899999999988765555554432 578998 6998875 3332 233 455543
Q ss_pred -CHH--------HHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhh
Q 010637 151 -SFE--------AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG 193 (505)
Q Consensus 151 -~~e--------a~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~ 193 (505)
+++ +++.++++|+.+| ..++++++......+.++...
T Consensus 155 ~~~e~~~~~~~~~~~~v~~l~~~~G------a~v~~~~~~~HD~~~A~vshl 200 (341)
T 3ktd_A 155 FDGTDINSTWISIWKDVVQMALAVG------AEVVPSRVGPHDAAAARVSHL 200 (341)
T ss_dssp TSSCCCCHHHHHHHHHHHHHHHHTT------CEEEECCHHHHHHHHHHHTHH
T ss_pred CChhhhccchHHHHHHHHHHHHHcC------CEEEEeCHHHHHHHHHHHhHH
Confidence 556 8999999999999 678999887777777776554
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.67 E-value=7.3e-16 Score=152.38 Aligned_cols=173 Identities=16% Similarity=0.172 Sum_probs=132.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|+|+|||+|.||..+|..|.++|++|.+|||++++.+.+.+.+.. ...+.+++++ .. +|+||+++|+. .+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~-~~---~D~vi~av~~~-~~ 70 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLV-----DEAGQDLSLL-QT---AKIIFLCTPIQ-LI 70 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSC-----SEEESCGGGG-TT---CSEEEECSCHH-HH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCC-----ccccCCHHHh-CC---CCEEEEECCHH-HH
Confidence 589999999999999999999999999999999998887654321 1356677777 65 99999999984 78
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCC----HHHhh----cCC-cccc---CCCHH
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGG----EEGAR----HGP-SLMP---GGSFE 153 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg----~~~a~----~G~-~im~---gg~~e 153 (505)
.++++++.+.+.++.+|+++++......+...+.+. .+++. |++|+ +..+. .|. +++. +++++
T Consensus 71 ~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~----~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~ 146 (279)
T 2f1k_A 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWS----GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPE 146 (279)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHST----TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHH
T ss_pred HHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHHHhC----CEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHH
Confidence 899999999999999999998876655444433322 46655 76653 32222 343 3332 46889
Q ss_pred HHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHh
Q 010637 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDM 199 (505)
Q Consensus 154 a~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~ 199 (505)
..+.++++|+.++ ..++++++...+.++|++.|+-.+...
T Consensus 147 ~~~~v~~l~~~~g------~~~~~~~~~~~~~~~~~~~~~p~~i~~ 186 (279)
T 2f1k_A 147 QLACLRSVLEPLG------VKIYLCTPADHDQAVAWISHLPVMVSA 186 (279)
T ss_dssp HHHHHHHHHGGGT------CEEEECCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHcC------CEEEEcCHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999 678888888889999999987544443
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-16 Score=171.82 Aligned_cols=190 Identities=15% Similarity=0.189 Sum_probs=138.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh-------hcccCC----------CCeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQ----------LPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~----------~~i~~~~s~~e~v~ 68 (505)
+++|||||+|.||.+||.+|+++||+|++||+++++++...+. ....|. .+++.+++++ .++
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~-~~~ 390 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYE-SFR 390 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSG-GGT
T ss_pred CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHH-HHC
Confidence 4689999999999999999999999999999999987764321 000100 0366777774 344
Q ss_pred hcCCCcEEEEEcCCCchHH-HHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH----CCCeEEeCCCCCCHHHhhcC
Q 010637 69 SIQRPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGVSGGEEGARHG 143 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~-~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~pvsGg~~~a~~G 143 (505)
. +|+||++||+...++ .++.++.+.++++.||++.+++.+.+ .+.+.+.. .|.||++ |+.. +
T Consensus 391 ~---aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~--~la~~~~~p~~~iG~hf~~-P~~~-------~ 457 (725)
T 2wtb_A 391 D---VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLN--KIGERTKSQDRIVGAHFFS-PAHI-------M 457 (725)
T ss_dssp T---CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH--HHTTTCSCTTTEEEEEECS-STTT-------C
T ss_pred C---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--HHHHHhcCCCCEEEecCCC-Cccc-------C
Confidence 4 999999999987665 45588888999999998776665543 23332211 3667766 4332 3
Q ss_pred C--ccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHH
Q 010637 144 P--SLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 144 ~--~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
+ .++.| +++++++.+.++++.+| +.++++++. .|+ +.|.+.. ..++|++.++++ | +++++
T Consensus 458 ~lvevv~g~~t~~e~~~~~~~l~~~lG------k~~v~v~d~-~Gf----i~Nril~---~~~~Ea~~l~~~-G-~~~e~ 521 (725)
T 2wtb_A 458 PLLEIVRTNHTSAQVIVDLLDVGKKIK------KTPVVVGNC-TGF----AVNRMFF---PYTQAAMFLVEC-G-ADPYL 521 (725)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHTT------CEEEEEESS-TTT----THHHHHH---HHHHHHHHHHHT-T-CCHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHhC------CEEEEECCC-ccH----HHHHHHH---HHHHHHHHHHHC-C-CCHHH
Confidence 3 34555 38999999999999999 889999873 554 3455443 457999999998 7 99999
Q ss_pred HHHHHH
Q 010637 220 LAEIFD 225 (505)
Q Consensus 220 i~~v~~ 225 (505)
+++++.
T Consensus 522 id~~~~ 527 (725)
T 2wtb_A 522 IDRAIS 527 (725)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999984
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-16 Score=171.85 Aligned_cols=190 Identities=14% Similarity=0.220 Sum_probs=137.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh-------hcccCCC----------CeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQL----------PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~~----------~i~~~~s~~e~v~ 68 (505)
.++|||||+|.||.+||.+|+++||+|++||+++++++..... ....|.. +++.++++ +.++
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~ 392 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG 392 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence 4689999999999999999999999999999999987763210 0001100 25667777 4455
Q ss_pred hcCCCcEEEEEcCCCchHHH-HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH----CCCeEEeCCCCCCHHHhhcC
Q 010637 69 SIQRPRSVIILVKAGSPVDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGVSGGEEGARHG 143 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~pvsGg~~~a~~G 143 (505)
. +|+||++||+...++. ++.++.+.++++.||++.+++.+.+ ++.+.+.. .|.||++ |+.. +
T Consensus 393 ~---aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~--~la~~~~~~~~~ig~hf~~-P~~~-------~ 459 (715)
T 1wdk_A 393 N---VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS--LLAKALKRPENFVGMHFFN-PVHM-------M 459 (715)
T ss_dssp G---CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH--HHGGGCSCGGGEEEEECCS-STTT-------C
T ss_pred C---CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHH--HHHHHhcCccceEEEEccC-Cccc-------C
Confidence 5 9999999999876654 5588888999999998776665543 23332211 2566655 4332 3
Q ss_pred C--ccccCC--CHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHH
Q 010637 144 P--SLMPGG--SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (505)
Q Consensus 144 ~--~im~gg--~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~ 219 (505)
+ .++.|. ++++++.+.++++.+| +.++++++. .|+ +.|.+.. ..++|++.++++ | +++++
T Consensus 460 ~lvevv~g~~t~~e~~~~~~~l~~~lG------k~~v~v~d~-~Gf----i~Nril~---~~~~Ea~~l~~~-G-~~~~~ 523 (715)
T 1wdk_A 460 PLVEVIRGEKSSDLAVATTVAYAKKMG------KNPIVVNDC-PGF----LVNRVLF---PYFGGFAKLVSA-G-VDFVR 523 (715)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHTT------CEEEEEESC-TTT----THHHHHH---HHHHHHHHHHHT-T-CCHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHhC------CEeEEEcCC-CCh----hhhHHHH---HHHHHHHHHHHC-C-CCHHH
Confidence 3 445554 8999999999999999 889999863 554 3454443 467999999997 7 99999
Q ss_pred HHHHHH
Q 010637 220 LAEIFD 225 (505)
Q Consensus 220 i~~v~~ 225 (505)
+++++.
T Consensus 524 id~~~~ 529 (715)
T 1wdk_A 524 IDKVME 529 (715)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999973
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.2e-16 Score=154.43 Aligned_cols=161 Identities=20% Similarity=0.230 Sum_probs=124.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+|+|||||+|.||..+|..|+++ |++|.+|||++++.+.+.+.+.. ...+.+++++++. +|+||++||+.
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~---aDvVilavp~~ 77 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIV-----DEATADFKVFAAL---ADVIILAVPIK 77 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSC-----SEEESCTTTTGGG---CSEEEECSCHH
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCc-----ccccCCHHHhhcC---CCEEEEcCCHH
Confidence 46899999999999999999988 68999999999998887664321 1356778777776 99999999995
Q ss_pred chHHHHHHHHHhc-CCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCC----CHHHhh----cCC-cc---ccC
Q 010637 84 SPVDQTIAALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSG----GEEGAR----HGP-SL---MPG 149 (505)
Q Consensus 84 ~~v~~vl~~l~~~-l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsG----g~~~a~----~G~-~i---m~g 149 (505)
.++++++++.+. +.++.+|+|++++.+..++.+.+.+.+++++|++ .|++| |+..+. .|. .+ ..+
T Consensus 78 -~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~ 156 (290)
T 3b1f_A 78 -KTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCL 156 (290)
T ss_dssp -HHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTT
T ss_pred -HHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCC
Confidence 678999999998 9999999999998776666666666555788887 47766 333222 454 22 236
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCCceEEeCCC
Q 010637 150 GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181 (505)
Q Consensus 150 g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~ 181 (505)
++++.++.++++|+.+| .+++++++.
T Consensus 157 ~~~~~~~~v~~l~~~~G------~~~~~~~~~ 182 (290)
T 3b1f_A 157 TKPNTIPALQDLLSGLH------ARYVEIDAA 182 (290)
T ss_dssp CCTTHHHHHHHHTGGGC------CEEEECCHH
T ss_pred CCHHHHHHHHHHHHHcC------CEEEEcCHH
Confidence 78899999999999999 677777653
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.1e-18 Score=159.86 Aligned_cols=158 Identities=17% Similarity=0.209 Sum_probs=115.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.|+|+|||+|.||..+|.+|.+.|++|.+|||+++ .+.+... ++... ++.++++. +|+||++||+. .
T Consensus 19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~-------g~~~~-~~~~~~~~---aDvVilav~~~-~ 85 (201)
T 2yjz_A 19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPR-------GAEVL-CYSEAASR---SDVIVLAVHRE-H 85 (201)
Confidence 46899999999999999999999999999999987 4444332 23444 66676665 99999999985 6
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCC--------------HHHhhcCC--ccccC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG--------------EEGARHGP--SLMPG 149 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg--------------~~~a~~G~--~im~g 149 (505)
++.++ ++.+ +.++++|||++|+.+... +...+..+++.++.++ ..+...|. .+++|
T Consensus 86 ~~~v~-~l~~-~~~~~ivI~~~~G~~~~~------~~~~~~~~l~~~~~~~~vvra~~n~~a~~~~~g~l~g~~~~~~~g 157 (201)
T 2yjz_A 86 YDFLA-ELAD-SLKGRVLIDVSNNQKMNQ------YPESNAEYLAQLVPGAHVVKAFNTISAWALQSGTLDASRQVFVCG 157 (201)
Confidence 77776 4544 347899999999986322 1111222233222221 11222222 67888
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhH
Q 010637 150 GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMV 190 (505)
Q Consensus 150 g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v 190 (505)
++++.++.++++|+.+| ..++++|+.|.|.++|.+
T Consensus 158 ~~~~~~~~v~~ll~~~G------~~~~~~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 158 NDSKAKDRVMDIARTLG------LTPLDQGSLVAAKEIENY 192 (201)
Confidence 89999999999999999 789999999999999875
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=160.11 Aligned_cols=190 Identities=17% Similarity=0.249 Sum_probs=136.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh-----------hcccC----CCCeeeeCCHHHHHhhc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-----------AHREG----QLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-----------~~~~g----~~~i~~~~s~~e~v~~l 70 (505)
+++|+|||+|.||.+||.+|+++|++|++||+++++++...+. +.... ......+.+++ .++.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~- 114 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELST- 114 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGG-GGTT-
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHH-HHCC-
Confidence 4689999999999999999999999999999999887765431 10000 00134466764 3444
Q ss_pred CCCcEEEEEcCCCchH-HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHH--H--CCCeEEeCCCCCCHHHhhcCC-
Q 010637 71 QRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--Q--KGLLYLGMGVSGGEEGARHGP- 144 (505)
Q Consensus 71 ~~advIil~vp~~~~v-~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~--~--~gi~~i~~pvsGg~~~a~~G~- 144 (505)
+|+||++||+...+ ..++.++.+.++++.+|++. |+.+..+ ++.+.+. + .|.||+ .|+.. ++
T Consensus 115 --aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~sn-Ts~~~~~-~la~~~~~~~~~ig~hf~-~P~~~-------~~l 182 (463)
T 1zcj_A 115 --VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTN-TSALNVD-DIASSTDRPQLVIGTHFF-SPAHV-------MRL 182 (463)
T ss_dssp --CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEEC-CSSSCHH-HHHTTSSCGGGEEEEEEC-SSTTT-------CCE
T ss_pred --CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeC-CCCcCHH-HHHHHhcCCcceEEeecC-CCccc-------cee
Confidence 99999999997544 45668888889999999984 4444333 4544332 1 266776 45432 23
Q ss_pred -ccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHH
Q 010637 145 -SLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELA 221 (505)
Q Consensus 145 -~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~ 221 (505)
.++.| +++++++.++++++.+| +.++++++ ..|+ +.|.+... .++|++.++++ | +++++++
T Consensus 183 vevv~g~~t~~e~~~~~~~l~~~lG------k~~v~v~~-~~gf----i~Nrll~~---~~~ea~~l~~~-G-~~~~~id 246 (463)
T 1zcj_A 183 LEVIPSRYSSPTTIATVMSLSKKIG------KIGVVVGN-CYGF----VGNRMLAP---YYNQGFFLLEE-G-SKPEDVD 246 (463)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHTT------CEEEEBCC-STTT----THHHHHHH---HHHHHHHHHHT-T-CCHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhC------CEEEEECC-CccH----HHHHHHHH---HHHHHHHHHHc-C-CCHHHHH
Confidence 34554 69999999999999999 88999986 4554 44555444 45999999887 7 9999999
Q ss_pred HHHH
Q 010637 222 EIFD 225 (505)
Q Consensus 222 ~v~~ 225 (505)
++++
T Consensus 247 ~~~~ 250 (463)
T 1zcj_A 247 GVLE 250 (463)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9985
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.65 E-value=8e-17 Score=159.52 Aligned_cols=183 Identities=9% Similarity=0.035 Sum_probs=124.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+|+|||||+|.||..|+..|+++ ++| .+|||++++.+++.+.. +. .+.+++++++. +|+||++||+.
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~------g~-~~~~~~~~~~~---~DvVilav~~~- 69 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVY------GG-KAATLEKHPEL---NGVVFVIVPDR- 69 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHT------CC-CCCSSCCCCC------CEEECSCTT-
T ss_pred CceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHc------CC-ccCCHHHHHhc---CCEEEEeCChH-
Confidence 46899999999999999999998 999 59999999988876542 23 45666666555 99999999996
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhh--cCCccccCCCHHHHHHHHHHH
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGAR--HGPSLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~--~G~~im~gg~~ea~~~v~~ll 162 (505)
.+.+++.++. .++++||+++++.+.+..+.. ..+..+...+++|++.... .+..++++++++.++.++++|
T Consensus 70 ~~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~----~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 142 (276)
T 2i76_A 70 YIKTVANHLN---LGDAVLVHCSGFLSSEIFKKS----GRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIA 142 (276)
T ss_dssp THHHHHTTTC---CSSCCEEECCSSSCGGGGCSS----SEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHH
T ss_pred HHHHHHHHhc---cCCCEEEECCCCCcHHHHHHh----hccccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHH
Confidence 5677776654 578999999987665432211 1112233446777554433 333667788888899999999
Q ss_pred HHHhcccCCCCceEEeCCCcch---hhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHH
Q 010637 163 QKVAAQVDDGPCVTYIGEGGSG---NFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (505)
Q Consensus 163 ~~iga~~~~~~~v~~vG~~G~g---~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~ 218 (505)
+.+| ..++++++.+.. ...+++.|.+. .++.|+..++.+.| ++.+
T Consensus 143 ~~lG------~~~~~v~~~~~~~~~~~~~l~~n~~~----~~~~~a~~~~~~~G-l~~~ 190 (276)
T 2i76_A 143 EEIS------GKYFVIPSEKKKAYHLAAVIASNFPV----ALAYLSKRIYTLLG-LDEP 190 (276)
T ss_dssp HHHC------SCEEECCGGGHHHHHHHHHHHHTTHH----HHHHHHHHHHHTTT-CSCH
T ss_pred HHhC------CCEEEECHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcC-CChH
Confidence 9999 678999864422 23467777554 35678888888888 9877
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-15 Score=151.69 Aligned_cols=253 Identities=14% Similarity=0.140 Sum_probs=161.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhccc---C-C--CCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE---G-Q--LPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~---g-~--~~i~~~~s~~e~v~~l~~advIil 78 (505)
.++||+|||+|.||..+|..|+++|++|++| +++++++.+.+.+... + . .++..++++++ +.. +|+||+
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~---~D~vil 92 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQG---ADLVLF 92 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTT---CSEEEE
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCC---CCEEEE
Confidence 3579999999999999999999999999999 9999998888764321 0 0 02344566654 333 999999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC---CCeEEeCCCCCCHHHhhcCC-ccccCCCHHH
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK---GLLYLGMGVSGGEEGARHGP-SLMPGGSFEA 154 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~---gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea 154 (505)
+||+. .++++++.+.+.+.++.+||.++|+.... +.+.+.+.+. ++.+..+-.+|.......+. .+.+|. .+.
T Consensus 93 avk~~-~~~~~l~~l~~~l~~~~~iv~~~nGi~~~-~~l~~~~~~~vl~g~~~~~a~~~gP~~~~~~~~g~~~ig~-~~~ 169 (318)
T 3hwr_A 93 CVKST-DTQSAALAMKPALAKSALVLSLQNGVENA-DTLRSLLEQEVAAAVVYVATEMAGPGHVRHHGRGELVIEP-TSH 169 (318)
T ss_dssp CCCGG-GHHHHHHHHTTTSCTTCEEEEECSSSSHH-HHHHHHCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEECC-CTT
T ss_pred Ecccc-cHHHHHHHHHHhcCCCCEEEEeCCCCCcH-HHHHHHcCCcEEEEEEEEeEEEcCCeEEEEcCCceEEEcC-CHH
Confidence 99996 89999999999999999999999987543 2444444210 11112222222111111112 233444 344
Q ss_pred HHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhH---------------------HHhHhhHHHHHHHHHHHhC
Q 010637 155 YNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGI---------------------EYGDMQLISEAYDVLKHVG 213 (505)
Q Consensus 155 ~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i---------------------~~~~~~~i~Ea~~l~~~~g 213 (505)
.+.+.++|...+ ..++...+.-...+-|++-|.. ...+..++.|+..++++.|
T Consensus 170 ~~~l~~~l~~~~------~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G 243 (318)
T 3hwr_A 170 GANLAAIFAAAG------VPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEG 243 (318)
T ss_dssp THHHHHHHHHTT------CCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC------CCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcC
Confidence 577888888877 5566655566677788876632 2345678899999999988
Q ss_pred CCCH--HHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHH
Q 010637 214 GLSN--AELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 214 ~l~~--~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
++. +....++....... ....++..++...+. ..+|.|.. +.++.|+++|+|+|+...
T Consensus 244 -~~l~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~tP~~~~ 303 (318)
T 3hwr_A 244 -VKLPDDVALAIRRIAETMP--RQSSSTAQDLARGKR-----SEIDHLNG---------LIVRRGDALGIPVPANRV 303 (318)
T ss_dssp -CCCCTTHHHHHHHHHHHST--TCCCHHHHHHHTTCC-----CSGGGTHH---------HHHHHHHHTTCCCHHHHH
T ss_pred -CCCChHHHHHHHHHHHhcC--CCCcHHHHHHHcCCh-----hHHHHHHH---------HHHHHHHHhCCCCcHHHH
Confidence 763 22222221111111 112233345443321 35666654 478999999999999875
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-16 Score=153.02 Aligned_cols=161 Identities=15% Similarity=0.222 Sum_probs=117.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEE-EeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v-~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
||||+|||+|.||..+|..|+++|++|.+ |||++++++++.+... +....+..+.++. +|+||++||. .
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g------~~~~~~~~~~~~~---aDvVilavp~-~ 92 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFG------ASVKAVELKDALQ---ADVVILAVPY-D 92 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHT------TTEEECCHHHHTT---SSEEEEESCG-G
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhC------CCcccChHHHHhc---CCEEEEeCCh-H
Confidence 57999999999999999999999999999 9999999888776532 2233344455555 9999999997 4
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCc------------hhHHHHHHHHHHCCCeEEe------CCCCC-CHHHhhcCC-
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWY------------LNTERRIHEASQKGLLYLG------MGVSG-GEEGARHGP- 144 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~------------~~t~~~~~~l~~~gi~~i~------~pvsG-g~~~a~~G~- 144 (505)
.+.+++.++.+ + ++++|||+++..+ ...+.+.+.+.. ..++. +++.. ++. ...++
T Consensus 93 ~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~--~~vv~~~~~~~~~v~~~g~~-~~~~~~ 167 (220)
T 4huj_A 93 SIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPG--AKVVKAFNTLPAAVLAADPD-KGTGSR 167 (220)
T ss_dssp GHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTT--CEEEEESCSSCHHHHTSCSB-CSSCEE
T ss_pred HHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCC--CCEEECCCCCCHHHhhhCcc-cCCCCe
Confidence 78888888776 5 6899999998773 144555555542 22322 22222 222 12223
Q ss_pred -ccccCCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhh
Q 010637 145 -SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187 (505)
Q Consensus 145 -~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~v 187 (505)
.++.|.++++.+.++++|+.+| ..++++|+.+.|..+
T Consensus 168 ~v~~~g~~~~~~~~v~~l~~~~G------~~~~~~G~l~~a~~~ 205 (220)
T 4huj_A 168 VLFLSGNHSDANRQVAELISSLG------FAPVDLGTLAASGPI 205 (220)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTT------CEEEECCSHHHHHHH
T ss_pred eEEEeCCCHHHHHHHHHHHHHhC------CCeEeeCChhhcchh
Confidence 4556778899999999999999 889999997766553
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=155.50 Aligned_cols=255 Identities=16% Similarity=0.178 Sum_probs=157.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhccc---C-C--CCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE---G-Q--LPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~---g-~--~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
+|||+|||+|.||..+|..|+++|++|++|+|+ ++.+.+.+.+... + . .++..+++++++ .. +|+||++
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~---~D~Vila 77 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAAL-GE---QDVVIVA 77 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHHH-CC---CSEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHHc-CC---CCEEEEe
Confidence 469999999999999999999999999999996 6677776554210 0 0 012345677664 43 9999999
Q ss_pred cCCCchHHHHHHHHHhcCCCCcEEEecCCCCc------------------hhHHHHHHHHHHCC----CeEEeCCCCCCH
Q 010637 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY------------------LNTERRIHEASQKG----LLYLGMGVSGGE 137 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~------------------~~t~~~~~~l~~~g----i~~i~~pvsGg~ 137 (505)
||+ .+++++++.+.+.+.++.+||.+.|+.+ ...+.+.+.+.... +.++++-.++..
T Consensus 78 vk~-~~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~gv~~~~a~~~~pg 156 (335)
T 3ghy_A 78 VKA-PALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCVVHLTCATVSPG 156 (335)
T ss_dssp CCH-HHHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEEEECCCEEESSTT
T ss_pred CCc-hhHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEEEEEEEEEEcCCc
Confidence 999 4889999999999999999999999953 11223344443221 111111122211
Q ss_pred HHhhcCC-cccc----CCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhh-------------------
Q 010637 138 EGARHGP-SLMP----GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG------------------- 193 (505)
Q Consensus 138 ~~a~~G~-~im~----gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~------------------- 193 (505)
.....+. .+.. +.+.+..+.+..+|+..+ ..+....+.-...+.|++-|.
T Consensus 157 ~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g------~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~~ 230 (335)
T 3ghy_A 157 HIRHGNGRRLILGEPAGGASPRLASIAALFGRAG------LQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDD 230 (335)
T ss_dssp EEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTT------CEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHHS
T ss_pred EEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCC------CCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHHhcC
Confidence 1111122 2333 334567788889998877 455555555555666755443
Q ss_pred --HHHhHhhHHHHHHHHHHHhCCCCHH-HHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHH
Q 010637 194 --IEYGDMQLISEAYDVLKHVGGLSNA-ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGK 270 (505)
Q Consensus 194 --i~~~~~~~i~Ea~~l~~~~g~l~~~-~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~ 270 (505)
....+..++.|+..++++.| ++++ ++.+++...... .....++..++...++ ...+|.+..
T Consensus 231 ~~~~~l~~~~~~E~~~va~a~G-~~~~~~~~~~~~~~~~~--~~~~sSM~qD~~~gr~----~tEid~i~G--------- 294 (335)
T 3ghy_A 231 PLVSAFCLAVMAEAKAIGARIG-CPIEQSGEARSAVTRQL--GAFKTSMLQDAEAGRG----PLEIDALVA--------- 294 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT-CCCCSCHHHHHHHHHTT--CSCCCTTTC-----CC----CCCHHHHTH---------
T ss_pred hHHHHHHHHHHHHHHHHHHHcC-CCCCccHHHHHHHHhcc--CCCCcHHHHHHHcCCC----CchHHHHhh---------
Confidence 34556789999999999988 7632 222222211111 1111122334333210 246788765
Q ss_pred HHHHHHHHcCCCcchHHH
Q 010637 271 WTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 271 ~~~~~A~~~gvp~p~i~~ 288 (505)
..++.|+++|+|+|+...
T Consensus 295 ~vv~~a~~~gv~~P~~~~ 312 (335)
T 3ghy_A 295 SVREIGLHVGVPTPQIDT 312 (335)
T ss_dssp HHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHhCCCCCHHHH
Confidence 478999999999998875
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=146.33 Aligned_cols=253 Identities=12% Similarity=0.100 Sum_probs=158.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhccc----CCC---CeeeeCCHHHHHhhcCCCcEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----GQL---PLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~----g~~---~i~~~~s~~e~v~~l~~advIil 78 (505)
+|||+|||+|.||..+|..|+++|++|++|+|++ .+.+.+.+... |.. .+..++++++ +.. +|+||+
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~---~D~vil 75 (312)
T 3hn2_A 2 SLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGP---MDLVLV 75 (312)
T ss_dssp --CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCC---CSEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCC---CCEEEE
Confidence 4689999999999999999999999999999986 36666544210 100 1223456655 333 999999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCHHHhhcCC-cccc----C
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMP----G 149 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~~~a~~G~-~im~----g 149 (505)
+||+. +++++++.+.+.+.++++||.+.|+... .+.+.+.+... ++.++++-.+|.......|+ .+.. +
T Consensus 76 avk~~-~~~~~l~~l~~~l~~~~~iv~l~nGi~~-~~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~ 153 (312)
T 3hn2_A 76 GLKTF-ANSRYEELIRPLVEEGTQILTLQNGLGN-EEALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLP 153 (312)
T ss_dssp CCCGG-GGGGHHHHHGGGCCTTCEEEECCSSSSH-HHHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSC
T ss_pred ecCCC-CcHHHHHHHHhhcCCCCEEEEecCCCCc-HHHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCC
Confidence 99995 7889999999999999999999998742 23444444332 22333333333211112222 2333 3
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhh---------------------HHHhHhhHHHHHHHH
Q 010637 150 GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG---------------------IEYGDMQLISEAYDV 208 (505)
Q Consensus 150 g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~---------------------i~~~~~~~i~Ea~~l 208 (505)
.+.+..+.+.++|+..+ ..+.+..+.-...+-|++-|. ....+..++.|+..+
T Consensus 154 ~~~~~~~~l~~~l~~~g------~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~v 227 (312)
T 3hn2_A 154 RDTGRIEELAAMFRQAG------VDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAG 227 (312)
T ss_dssp CCSHHHHHHHHHHHHTT------CCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCC------CCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHH
Confidence 45667788889998877 455554444445555655543 334456788999999
Q ss_pred HHHhC---CCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcch
Q 010637 209 LKHVG---GLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPT 285 (505)
Q Consensus 209 ~~~~g---~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~ 285 (505)
+++.| .++.+.+..++....... . ...++..++...+ ...+|.+.. +.++.|+++|+|+|+
T Consensus 228 a~a~G~~~~~~~~~~~~~~~~~~~~~-~-~~sSM~qD~~~gr-----~tEid~i~G---------~vv~~a~~~gv~~P~ 291 (312)
T 3hn2_A 228 ANAQGLATFIADGYVDDMLEFTDAMG-E-YKPSMEIDREEGR-----PLEIAAIFR---------TPLAYGAREGIAMPR 291 (312)
T ss_dssp HHTSCCSSCCCTTHHHHHHHHHTTSC-S-CCCHHHHHHHTTC-----CCCHHHHTH---------HHHHHHHHTTCCCHH
T ss_pred HHHcCCccCCCHHHHHHHHHHHhcCC-C-CCchHHHHHHhCC-----CccHHHHhh---------HHHHHHHHhCCCCCH
Confidence 98876 234333333333222211 1 1123334544332 146777764 578999999999998
Q ss_pred HHH
Q 010637 286 IAA 288 (505)
Q Consensus 286 i~~ 288 (505)
...
T Consensus 292 ~~~ 294 (312)
T 3hn2_A 292 VEM 294 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.5e-15 Score=148.87 Aligned_cols=251 Identities=16% Similarity=0.111 Sum_probs=160.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc-----cCCC---CeeeeCCHHHHHhhcCCCcEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR-----EGQL---PLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~-----~g~~---~i~~~~s~~e~v~~l~~advIi 77 (505)
+|||+|||+|.||..+|..|+++|++|++|+|++ .+.+.+.+.. .|.. .+..+.+++++.+. +|+||
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~---~DlVi 76 (320)
T 3i83_A 2 SLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETK---PDCTL 76 (320)
T ss_dssp -CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSC---CSEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCC---CCEEE
Confidence 4799999999999999999999999999999987 3666654321 1100 12345666665533 99999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCC------HHHhhcCC-cccc--
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG------EEGARHGP-SLMP-- 148 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg------~~~a~~G~-~im~-- 148 (505)
++||.. +++++++.+.+.+.++++||.+.|+.... +.+.+.+... .++.+++..+ .+-...++ .+..
T Consensus 77 lavK~~-~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~-~~l~~~~~~~--~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~ 152 (320)
T 3i83_A 77 LCIKVV-EGADRVGLLRDAVAPDTGIVLISNGIDIE-PEVAAAFPDN--EVISGLAFIGVTRTAPGEIWHQAYGRLMLGN 152 (320)
T ss_dssp ECCCCC-TTCCHHHHHTTSCCTTCEEEEECSSSSCS-HHHHHHSTTS--CEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred EecCCC-ChHHHHHHHHhhcCCCCEEEEeCCCCChH-HHHHHHCCCC--cEEEEEEEeceEEcCCCEEEECCCCEEEEec
Confidence 999996 67889999999999999999999987422 3344444432 2333332221 11112233 3333
Q ss_pred --CCCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhH--------------------HHhHhhHHHHHH
Q 010637 149 --GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGI--------------------EYGDMQLISEAY 206 (505)
Q Consensus 149 --gg~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i--------------------~~~~~~~i~Ea~ 206 (505)
+.+.+..+.+.++|+.-+ ..+.+..+.-...+-|++-|.. ...+..++.|+.
T Consensus 153 ~~~~~~~~~~~l~~~l~~~~------~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~~ 226 (320)
T 3i83_A 153 YPGGVSERVKTLAAAFEEAG------IDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEIR 226 (320)
T ss_dssp SSSCCCHHHHHHHHHHHHTT------SCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHhCC------CCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHHH
Confidence 345677788899998877 5566665566666777766531 233567889999
Q ss_pred HHHHHhCCCCHH--HHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcc
Q 010637 207 DVLKHVGGLSNA--ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAP 284 (505)
Q Consensus 207 ~l~~~~g~l~~~--~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p 284 (505)
.++++.| ++.+ .+..++....... . ...++..++...+ ...+|.+.. ..++.|+++|+|+|
T Consensus 227 ~va~a~G-~~l~~~~~~~~~~~~~~~~-~-~~sSM~qD~~~gr-----~tEid~i~G---------~vv~~a~~~gv~~P 289 (320)
T 3i83_A 227 AVAAANG-HPLPEDIVEKNVASTYKMP-P-YKTSMLVDFEAGQ-----PMETEVILG---------NAVRAGRRTRVAIP 289 (320)
T ss_dssp HHHHHTT-CCCCTTHHHHHHHHHHHSC-C-CCCHHHHHHHHTC-----CCCHHHHTH---------HHHHHHHHTTCCCH
T ss_pred HHHHHcC-CCCChHHHHHHHHHHhcCC-C-CCCcHHHHHHhCC-----CchHHHHcc---------HHHHHHHHhCCCCC
Confidence 9999988 7632 2222222111111 1 1122334444332 146777764 47899999999999
Q ss_pred hHHH
Q 010637 285 TIAA 288 (505)
Q Consensus 285 ~i~~ 288 (505)
+...
T Consensus 290 ~~~~ 293 (320)
T 3i83_A 290 HLES 293 (320)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-15 Score=149.17 Aligned_cols=180 Identities=14% Similarity=0.137 Sum_probs=134.2
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 5 ALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 5 ~~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++++|+||| +|.||.++|..|++.|++|.+|||+++. ++.+++.. +|+||+|||..
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~--------------------~~~~~~~~---aDvVilavp~~ 76 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA--------------------VAESILAN---ADVVIVSVPIN 76 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG--------------------GHHHHHTT---CSEEEECSCGG
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc--------------------CHHHHhcC---CCEEEEeCCHH
Confidence 346899999 9999999999999999999999998642 34455555 99999999996
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHHHhhcCC-cccc-CCCHHHHHHHHH
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGP-SLMP-GGSFEAYNNIRD 160 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~~a~~G~-~im~-gg~~ea~~~v~~ 160 (505)
.+.++++++.+.+.++.+|+|+++......+...+. .+..|++. |++|.+.....|. .+++ +.+++.++.+++
T Consensus 77 -~~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~---~~~~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~ 152 (298)
T 2pv7_A 77 -LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV---HTGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLE 152 (298)
T ss_dssp -GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH---CSSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHH
T ss_pred -HHHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHh---cCCCEEeeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHH
Confidence 699999999999999999999988766544444333 34678875 8887765555665 4443 447888999999
Q ss_pred HHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHH
Q 010637 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 161 ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
+|+.+| .+++++++......++++.++-.+.... +.+++ .+.| ++.++..+
T Consensus 153 l~~~~G------~~~~~~~~~~~d~~~a~~~~~p~~~a~~-l~~~l---~~~g-~~~~~~~~ 203 (298)
T 2pv7_A 153 QIQIWG------AKIYQTNATEHDHNMTYIQALRHFSTFA-NGLHL---SKQP-INLANLLA 203 (298)
T ss_dssp HHHHTT------CEEEECCHHHHHHHHHHHTHHHHHHHHH-HHHHH---TTSS-CCHHHHHH
T ss_pred HHHHcC------CEEEECCHHHHHHHHHHHHHHHHHHHHH-HHHHH---HhcC-CCHHHHHh
Confidence 999999 6788888766778888887765443322 22332 2355 77765544
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-16 Score=150.42 Aligned_cols=169 Identities=17% Similarity=0.178 Sum_probs=120.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++|+|+|||+|.||..++..|+++|++|.++||++++.+.+.+.+ +... +.+++++. +|+||+++|+.
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g-------~~~~-~~~~~~~~---~DvVi~av~~~- 94 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSA-------AQVT-FQEEAVSS---PEVIFVAVFRE- 94 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTT-------SEEE-EHHHHTTS---CSEEEECSCGG-
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------Ccee-cHHHHHhC---CCEEEECCChH-
Confidence 346899999999999999999999999999999999887765432 4444 67776665 99999999974
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHH----HHHHHHH--CCCeEEeC--CCCCCH--HHhhcCC--ccccCCCH
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTER----RIHEASQ--KGLLYLGM--GVSGGE--EGARHGP--SLMPGGSF 152 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~----~~~~l~~--~gi~~i~~--pvsGg~--~~a~~G~--~im~gg~~ 152 (505)
.++.+++ +.+.+ ++.+|||++++.+..+.+ ..+.+.+ .+.+++.+ ++++.. +++..|+ .++.|+++
T Consensus 95 ~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~ 172 (215)
T 2vns_A 95 HYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQP 172 (215)
T ss_dssp GSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTSEEEEECTTBCHHHHHTCSCSSCCEEEEEESCH
T ss_pred HHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCCCeEEeccccccHhHhcccccCCceeEEEecCCH
Confidence 5666664 55555 799999999998755421 1122221 12233321 222111 1122333 67788899
Q ss_pred HHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhh
Q 010637 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG 193 (505)
Q Consensus 153 ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~ 193 (505)
+.++.++++|+.+| .+++++|+.|+|+.++.+-+.
T Consensus 173 ~~~~~v~~ll~~~G------~~~~~~g~~~~~~~~e~~~~~ 207 (215)
T 2vns_A 173 EAKRAVSEMALAMG------FMPVDMGSLASAWEVEAMPLR 207 (215)
T ss_dssp HHHHHHHHHHHHTT------CEEEECCSGGGHHHHHHSCCB
T ss_pred HHHHHHHHHHHHcC------CceEeecchhhhhHhhhhhhh
Confidence 99999999999999 789999999999998765443
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-15 Score=144.89 Aligned_cols=151 Identities=15% Similarity=0.130 Sum_probs=114.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|+|+|||+|.||..+|..|+++|++|.+|||+++ .++.+|+||+++|+ ..
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~----------------------------~~~~aD~vi~av~~-~~ 69 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ----------------------------ATTLGEIVIMAVPY-PA 69 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC----------------------------CSSCCSEEEECSCH-HH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH----------------------------HhccCCEEEEcCCc-HH
Confidence 47899999999999999999999999999998864 11238999999995 67
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCc-hh------------HHHHHHHHHHCCCeEEeC-CCCCCHHHhh---cC--C-c
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWY-LN------------TERRIHEASQKGLLYLGM-GVSGGEEGAR---HG--P-S 145 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~-~~------------t~~~~~~l~~~gi~~i~~-pvsGg~~~a~---~G--~-~ 145 (505)
++++++++.+.++ +.+||+++|+.+ .+ .+.+.+.+. +..++.+ ....++..+. .| + .
T Consensus 70 ~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~p~~~~~~~~g~~~~~ 146 (209)
T 2raf_A 70 LAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP--DSQVLKAFNTTFAATLQSGQVNGKEPTT 146 (209)
T ss_dssp HHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT--TSEEEECSTTSCHHHHHHSEETTTEECE
T ss_pred HHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC--CCcEEEeeecccHhhccccccCCCCCce
Confidence 8899998888887 999999999664 11 344444443 4677772 2222332222 23 3 4
Q ss_pred cccCC-CHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhH
Q 010637 146 LMPGG-SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGI 194 (505)
Q Consensus 146 im~gg-~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i 194 (505)
++++| ++++.+.++++|+.++ ..++++++.+.+..+|++.|.+
T Consensus 147 ~~~~g~~~~~~~~v~~ll~~~G------~~~~~~~~i~~a~~~K~i~~l~ 190 (209)
T 2raf_A 147 VLVAGNDDSAKQRFTRALADSP------LEVKDAGKLKRARELEAMGFMQ 190 (209)
T ss_dssp EEEEESCHHHHHHHHHHTTTSS------CEEEEEESGGGHHHHHHHHHHH
T ss_pred eEEcCCCHHHHHHHHHHHHHcC------CceEeCCCHhHHHHhcchHHHH
Confidence 45555 5688999999999999 6789999999999999987664
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.8e-14 Score=144.62 Aligned_cols=272 Identities=12% Similarity=0.010 Sum_probs=169.6
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC--------cEEEEeCChHH-----HHHHHHhhcccCCC-------CeeeeCCHHHHH
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGF--------PISVYNRTTSK-----VDETLDRAHREGQL-------PLTGHYTPRDFV 67 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~--------~V~v~dr~~~~-----~~~l~~~~~~~g~~-------~i~~~~s~~e~v 67 (505)
||+|||.|.||++||..|+++|+ +|.+|.|+++. .+.+...+.+..++ ++..++++++++
T Consensus 36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al 115 (391)
T 4fgw_A 36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV 115 (391)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence 89999999999999999999876 49999998753 33344333221111 578889999998
Q ss_pred hhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhH---HHHHHHHHH-CCCe--EEeCCCCCCHHHhh
Q 010637 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT---ERRIHEASQ-KGLL--YLGMGVSGGEEGAR 141 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t---~~~~~~l~~-~gi~--~i~~pvsGg~~~a~ 141 (505)
+. +|+||++||. +.++.+++++.+++.++.++|.++.+....+ +.+.+.+.+ .+.. .+..|-. ..+-++
T Consensus 116 ~~---ad~ii~avPs-~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~~~~vLsGPs~-A~EVa~ 190 (391)
T 4fgw_A 116 KD---VDIIVFNIPH-QFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELGIQCGALSGANI-ATEVAQ 190 (391)
T ss_dssp TT---CSEEEECSCG-GGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHCCEEEEEECSCC-HHHHHT
T ss_pred hc---CCEEEEECCh-hhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhCccceeccCCch-HHHhhc
Confidence 87 9999999999 5899999999999999999999998865332 122333332 2333 3333333 345555
Q ss_pred cCC-ccccC-CC---------HHHHHHHHHHHHH-----------HhcccCC-CCceEEeCCCcchhhhhhHhhhHHHhH
Q 010637 142 HGP-SLMPG-GS---------FEAYNNIRDILQK-----------VAAQVDD-GPCVTYIGEGGSGNFVKMVHNGIEYGD 198 (505)
Q Consensus 142 ~G~-~im~g-g~---------~ea~~~v~~ll~~-----------iga~~~~-~~~v~~vG~~G~g~~vK~v~N~i~~~~ 198 (505)
.-| .+.++ .+ +...+.++.+|.. +|.++.+ -|+|+-++. |....+++-.|+..+.+
T Consensus 191 ~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAa-Gi~dGlg~G~NakAALi 269 (391)
T 4fgw_A 191 EHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGC-GFVEGLGWGNNASAAIQ 269 (391)
T ss_dssp TCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHH
T ss_pred CCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHH-HHHhcCCCCCCHHHHHH
Confidence 555 33332 22 2223556666632 1111111 145555433 55666778889999999
Q ss_pred hhHHHHHHHHHHHh--CCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccC----C-CchhHHHHHhhh--CCCchH
Q 010637 199 MQLISEAYDVLKHV--GGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEY----G-EGELVDKILDKT--GMKGTG 269 (505)
Q Consensus 199 ~~~i~Ea~~l~~~~--g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~----~-~~~~l~~i~~~~--~~kgtg 269 (505)
...++|+.+|+... +|-++..+... .|.++-.+ +... .++..+ . .+..++.+.+.+ +|+-+|
T Consensus 270 trGl~Em~rlg~al~~~g~~~tt~~gl-----aGlGDLi~--Tc~s--SRNr~~G~~lg~~G~~~~~~~~~~~~g~v~EG 340 (391)
T 4fgw_A 270 RVGLGEIIRFGQMFFPESREETYYQES-----AGVADLIT--TCAG--GRNVKVARLMATSGKDAWECEKELLNGQSAQG 340 (391)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHST-----TTHHHHHH--HHHS--SHHHHHHHHHHHTCCCHHHHHHHHHTTCCCTH
T ss_pred HHHHHHHHHHHHHHhcccCCceeecCC-----CcccceeE--EecC--CccHHHHHHHHhcCCCHHHHHHHHhCCCEEeh
Confidence 99999999999987 32333322111 12222111 1111 000111 1 234566777766 788999
Q ss_pred HHHHH----HHHHcCC--CcchHHHHHHHHHH
Q 010637 270 KWTVQ----QAAELSV--AAPTIAASLDCRYL 295 (505)
Q Consensus 270 ~~~~~----~A~~~gv--p~p~i~~av~~r~~ 295 (505)
..++. .+.++|+ .+|++.+ |+..++
T Consensus 341 v~ta~~v~~l~~~~~v~~emPI~~~-vy~IL~ 371 (391)
T 4fgw_A 341 LITCKEVHEWLETCGSVEDFPLFEA-VYQIVY 371 (391)
T ss_dssp HHHHHHHHHHHHHHTCSTTCHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCHHHH-HHHHHh
Confidence 77775 4677899 8998874 555443
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.1e-15 Score=147.82 Aligned_cols=248 Identities=16% Similarity=0.118 Sum_probs=150.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
|+|||+|||+|.||..+|..|+++|++|++|+|+++.++.....+. .......++.+.+ .+.+|+||++||+.
T Consensus 1 M~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~----~~~~~~~~~~~~~--~~~~D~vilavk~~- 73 (294)
T 3g17_A 1 MSLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHA----PAQDIVVKGYEDV--TNTFDVIIIAVKTH- 73 (294)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTS----CCEEEEEEEGGGC--CSCEEEEEECSCGG-
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCe----eccceecCchHhc--CCCCCEEEEeCCcc-
Confidence 3479999999999999999999999999999999764321111110 0122222333332 02489999999995
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC----CCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHH
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIR 159 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~ 159 (505)
+++++++.+.+.+.++++||...|+...... +... |+.++++-.+|.. .+..++ .+.. ++.+..+.+.
T Consensus 74 ~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~-----~~~~~v~~g~~~~~a~~~~pg-~v~~~~~~~~~-~~~~~~~~l~ 146 (294)
T 3g17_A 74 QLDAVIPHLTYLAHEDTLIILAQNGYGQLEH-----IPFKNVCQAVVYISGQKKGDV-VTHFRDYQLRI-QDNALTRQFR 146 (294)
T ss_dssp GHHHHGGGHHHHEEEEEEEEECCSSCCCGGG-----CCCSCEEECEEEEEEEEETTE-EEEEEEEEEEE-ECSHHHHHHH
T ss_pred CHHHHHHHHHHhhCCCCEEEEeccCcccHhh-----CCCCcEEEEEEEEEEEEcCCC-EEEECCCEEec-CccHHHHHHH
Confidence 7899999999999888999999998765432 2211 2222222122111 111122 2222 3455566777
Q ss_pred HHHHHHhcccCCCCceEEeCCCcchhhhhhHhhh--------------------HHHhHhhHHHHHHHHHHHhCCCC--H
Q 010637 160 DILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG--------------------IEYGDMQLISEAYDVLKHVGGLS--N 217 (505)
Q Consensus 160 ~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~--------------------i~~~~~~~i~Ea~~l~~~~g~l~--~ 217 (505)
++|+.-+ ..+.+..+.-...+-|++-|. ....+..++.|+..++++.| ++ .
T Consensus 147 ~~l~~~~------~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G-~~l~~ 219 (294)
T 3g17_A 147 DLVQDSQ------IDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEG-LNFSE 219 (294)
T ss_dssp HHTTTSS------CEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTT-CCCCH
T ss_pred HHHHhCC------CceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcC-CCCCH
Confidence 7776655 445555555555666665554 23335678899999999988 65 4
Q ss_pred HHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHH
Q 010637 218 AELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (505)
Q Consensus 218 ~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~ 288 (505)
+.+.+.+......... ...++..++...+. ..+|.|.. +.++.|+++|+|+|+...
T Consensus 220 ~~~~~~~~~~~~~~~~-~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P~~~~ 275 (294)
T 3g17_A 220 QTVDTIMTIYQGYPDE-MGTSMYYDIVHQQP-----LEVEAIQG---------FIYRRAREHNLDTPYLDT 275 (294)
T ss_dssp HHHHHHHHHHHTSCTT-CCCHHHHHHHTTCC-----CSGGGTHH---------HHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHhhcCCC-CCCcHHHHHHcCCC-----ccHHHhhh---------HHHHHHHHhCCCCChHHH
Confidence 4455554332221111 11233344443321 35566654 578999999999998875
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-13 Score=138.02 Aligned_cols=192 Identities=13% Similarity=0.070 Sum_probs=128.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|+|||+|.||.++|.+|.+.|++|.+|+|++++..+..... ++..+ +++++++. +|+||++||+. .
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~------G~~~~-~~~e~~~~---aDvVilavp~~-~ 84 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAH------GLKVA-DVKTAVAA---ADVVMILTPDE-F 84 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHT------TCEEE-CHHHHHHT---CSEEEECSCHH-H
T ss_pred CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHC------CCEEc-cHHHHHhc---CCEEEEeCCcH-H
Confidence 36899999999999999999999999999999987633333221 24555 88888876 99999999995 5
Q ss_pred HHHHHH-HHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCCHHH---hh---cCC-cc-cc--CCCHH
Q 010637 86 VDQTIA-ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEG---AR---HGP-SL-MP--GGSFE 153 (505)
Q Consensus 86 v~~vl~-~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg~~~---a~---~G~-~i-m~--gg~~e 153 (505)
...++. ++.+.++++.+|+|+++. .. .+.......++.|+.. | +|.... .. .|. .+ .+ +.+++
T Consensus 85 ~~~v~~~~i~~~l~~~~ivi~~~gv---~~-~~~~~~~~~~~~vv~~~P-~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~ 159 (338)
T 1np3_A 85 QGRLYKEEIEPNLKKGATLAFAHGF---SI-HYNQVVPRADLDVIMIAP-KAPGHTVRSEFVKGGGIPDLIAIYQDASGN 159 (338)
T ss_dssp HHHHHHHHTGGGCCTTCEEEESCCH---HH-HTTSSCCCTTCEEEEEEE-SSCSHHHHHHHHTTCCCCEEEEEEECSSSC
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCCc---hh-HHHhhcCCCCcEEEeccC-CCCchhHHHHHhccCCCeEEEEecCCCCHH
Confidence 688888 999999999999998542 11 2211111335666654 4 443221 11 254 43 33 45678
Q ss_pred HHHHHHHHHHHHhcccCCCC-c--eEEeCCCcchhhhhhHhh-hHHHhHhhHHHHHHHHHHHhCCCCHHHH
Q 010637 154 AYNNIRDILQKVAAQVDDGP-C--VTYIGEGGSGNFVKMVHN-GIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (505)
Q Consensus 154 a~~~v~~ll~~iga~~~~~~-~--v~~vG~~G~g~~vK~v~N-~i~~~~~~~i~Ea~~l~~~~g~l~~~~i 220 (505)
+.+.+..+++.+| . . ++.+..........++.+ .+..+...+++.++..+.+.| +++++.
T Consensus 160 a~~~~~~l~~~lG------~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~G-l~~~~a 223 (338)
T 1np3_A 160 AKNVALSYACGVG------GGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAG-YAPEMA 223 (338)
T ss_dssp HHHHHHHHHHHTT------HHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT-CCHHHH
T ss_pred HHHHHHHHHHHcC------CCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CCHHHH
Confidence 8899999999999 3 3 566543222233334433 343445556666666667788 998765
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=131.65 Aligned_cols=156 Identities=12% Similarity=0.129 Sum_probs=116.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..|||||||+|.||.+||++|.++||+|.+|++.. + +.. +| |++||++
T Consensus 5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~~-------------------------~-~~~---aD--ilavP~~- 52 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAPE-------------------------D-IRD---FE--LVVIDAH- 52 (232)
T ss_dssp CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSGG-------------------------G-GGG---CS--EEEECSS-
T ss_pred CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCHH-------------------------H-hcc---CC--EEEEcHH-
Confidence 35799999999999999999999999999999830 1 233 89 9999997
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCHHHhhcCCccccCCCHHHHHHHHHHHH
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQ 163 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~ 163 (505)
.+.+++.++.+.+.+|++|+|+|++..... .+.+..+|.+|++ .|+.|.. .++.++++++++.++++++
T Consensus 53 ai~~vl~~l~~~l~~g~ivvd~sgs~~~~v---l~~~~~~g~~fvg~HPm~g~~-------~~i~a~d~~a~~~l~~L~~ 122 (232)
T 3dfu_A 53 GVEGYVEKLSAFARRGQMFLHTSLTHGITV---MDPLETSGGIVMSAHPIGQDR-------WVASALDELGETIVGLLVG 122 (232)
T ss_dssp CHHHHHHHHHTTCCTTCEEEECCSSCCGGG---GHHHHHTTCEEEEEEEEETTE-------EEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCcCHHHH---HHHHHhCCCcEEEeeeCCCCc-------eeeeCCCHHHHHHHHHHHH
Confidence 899999999999999999999887655433 2334467899986 5876532 3445568889999999999
Q ss_pred HHhcccCCCCceEEeCCCcchhh-hhhHhhhHHHhHhhHHHHHHHHHHH
Q 010637 164 KVAAQVDDGPCVTYIGEGGSGNF-VKMVHNGIEYGDMQLISEAYDVLKH 211 (505)
Q Consensus 164 ~iga~~~~~~~v~~vG~~G~g~~-vK~v~N~i~~~~~~~i~Ea~~l~~~ 211 (505)
.+| .+++++++.....+ .-.+|+- -+..++.++..++++
T Consensus 123 ~lG------~~vv~~~~~~hd~~~AAvsh~n---hLv~L~~~A~~ll~~ 162 (232)
T 3dfu_A 123 ELG------GSIVEIADDKRAQLAAALTYAG---FLSTLQRDASYFLDE 162 (232)
T ss_dssp HTT------CEECCCCGGGHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HhC------CEEEEeCHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 999 67888877443333 2233322 245566777777743
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.46 E-value=5.6e-14 Score=149.01 Aligned_cols=116 Identities=7% Similarity=0.132 Sum_probs=99.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---hcCCCceecccHHHHHHHHhcCCCCCCCcc
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARI---WKGGCIIRAVFLDRIKKAYQRNPNLASLVV 402 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~i---W~~Gciirs~lL~~i~~~~~~~~~~~~ll~ 402 (505)
+.+|++||+||+++|++|+.++|+|.|+++. .++|.++++++ |+.| .++|++++...+++.+++..+..++
T Consensus 179 Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~-----~Gld~~~l~~v~~~w~~G-~~~S~l~e~~~~~l~~~D~~g~~~l 252 (484)
T 4gwg_A 179 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDV-----LGMAQDEMAQAFEDWNKT-ELDSFLIEITANILKFQDTDGKHLL 252 (484)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SCCCHHHHHHHHHHHTTT-TTCBHHHHHHHHHHHCBCTTSSBSG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHcCC-CccchHHHHHHHHHhcCCccCCccH
Confidence 5789999999999999999999999999952 34887776655 9999 6899999999999986443355777
Q ss_pred cHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCh
Q 010637 403 DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARL 449 (505)
Q Consensus 403 ~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~ 449 (505)
|.+.+...++++| ||+++.|+++|+|+|+|++||+ |+++++.+|.
T Consensus 253 d~i~d~~~~kgtG--~wt~~~A~~~gvp~p~i~~av~~R~~S~~k~~r~ 299 (484)
T 4gwg_A 253 PKIRDSAGQKGTG--KWTAISALEYGVPVTLIGEAVFARCLSSLKDERI 299 (484)
T ss_dssp GGSCCCCCSSCTT--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHhccccCcchH--HHHHHHHHHcCCCchHHHHHHHHHHHhhchHHHH
Confidence 8788888889999 9999999999999999999999 7777776654
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-13 Score=135.88 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=72.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeC-------CH-HHHHhhcCCCcEE
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY-------TP-RDFVLSIQRPRSV 76 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~-------s~-~e~v~~l~~advI 76 (505)
|+|||+|||+|.||..+|..|+ +|++|++|+|++++.+.+.+.+.. +.... +. .+. +..+|+|
T Consensus 1 M~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~-----~~~~~~~~~~~~~~~~~~---~~~~D~v 71 (307)
T 3ego_A 1 MSLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIR-----LYKGGEEFRADCSADTSI---NSDFDLL 71 (307)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEE-----EEETTEEEEECCEEESSC---CSCCSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCce-----EecCCCeecccccccccc---cCCCCEE
Confidence 3579999999999999999999 999999999999888888765431 11000 00 122 2348999
Q ss_pred EEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
|++||+. +++++++.+.+. .++. ||...|+...
T Consensus 72 ilavK~~-~~~~~l~~l~~~-~~~~-ivs~~nGi~~ 104 (307)
T 3ego_A 72 VVTVKQH-QLQSVFSSLERI-GKTN-ILFLQNGMGH 104 (307)
T ss_dssp EECCCGG-GHHHHHHHTTSS-CCCE-EEECCSSSHH
T ss_pred EEEeCHH-HHHHHHHHhhcC-CCCe-EEEecCCccH
Confidence 9999995 789999888764 5555 8899998753
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.1e-12 Score=141.06 Aligned_cols=193 Identities=17% Similarity=0.286 Sum_probs=138.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh-----------hcccC----CCCeeeeCCHHHHHhhc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-----------AHREG----QLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-----------~~~~g----~~~i~~~~s~~e~v~~l 70 (505)
..+|||||+|.||..||..++.+|++|.++|++++.++...+. +.... ..++....+.+++.+
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 393 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELST-- 393 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGS--
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhh--
Confidence 3589999999999999999999999999999999866543321 10000 014667777776543
Q ss_pred CCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHH--HC--CCeEEeCC-CCCCHHHhhcCC
Q 010637 71 QRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QK--GLLYLGMG-VSGGEEGARHGP 144 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~--~~--gi~~i~~p-vsGg~~~a~~G~ 144 (505)
+|+||.+|++...++.-+ .+|.+.++++.|+...|++.+.+. +++.+. ++ |.||+..| +.--.
T Consensus 394 --aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~--ia~~~~~p~r~ig~HFfnP~~~m~LV------- 462 (742)
T 3zwc_A 394 --VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDD--IASSTDRPQLVIGTHFFSPAHVMRLL------- 462 (742)
T ss_dssp --CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHH--HHTTSSCGGGEEEEECCSSTTTCCEE-------
T ss_pred --CCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHH--HHhhcCCccccccccccCCCCCCceE-------
Confidence 999999999998887554 888888989888887777765443 333222 22 66776643 22111
Q ss_pred ccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHH
Q 010637 145 SLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (505)
Q Consensus 145 ~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~ 222 (505)
-++.| .++++++.+..+.+.++ +.++.+. +..|+++ |.+ ....+.|++.++.+ | .+++++++
T Consensus 463 Evi~g~~Ts~e~~~~~~~~~~~lg------K~pV~vk-d~pGFi~----NRi---~~~~~~ea~~l~~e-G-~~~~~id~ 526 (742)
T 3zwc_A 463 EVIPSRYSSPTTIATVMSLSKKIG------KIGVVVG-NCYGFVG----NRM---LAPYYNQGFFLLEE-G-SKPEDVDG 526 (742)
T ss_dssp EEEECSSCCHHHHHHHHHHHHHTT------CEEEECC-CSTTTTH----HHH---HHHHHHHHHHHHHT-T-CCHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHhC------CCCcccC-CCCCccH----HHH---hhHHHHHHHHHHHc-C-CCHHHHHH
Confidence 13333 58899999999999999 7888875 4567665 444 45566999999886 5 89999999
Q ss_pred HHHHh
Q 010637 223 IFDEW 227 (505)
Q Consensus 223 v~~~~ 227 (505)
++..+
T Consensus 527 a~~~~ 531 (742)
T 3zwc_A 527 VLEEF 531 (742)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 98654
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-14 Score=145.76 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=103.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.++|+|||+|.||..++.+|++. |+ +|.+|||++++.+++.+.... ++..+.+++++++. +|+|++|+|..
T Consensus 135 ~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~----~~~~~~~~~e~v~~---aDiVi~atp~~ 207 (312)
T 2i99_A 135 SEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQG----EVRVCSSVQEAVAG---ADVIITVTLAT 207 (312)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSS----CCEECSSHHHHHTT---CSEEEECCCCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhC----CeEEeCCHHHHHhc---CCEEEEEeCCC
Confidence 46899999999999999999886 76 899999999999998875321 15678899999887 99999999964
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe----CCCCCCH----HHhhcCC-ccccCCCHH
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG----MGVSGGE----EGARHGP-SLMPGGSFE 153 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~----~pvsGg~----~~a~~G~-~im~gg~~e 153 (505)
+.++.. +.+++|++|+++++..|.. .++.+.+.++|..|++ +|+..|+ .++..|+ ..|++|+.+
T Consensus 208 ---~~v~~~--~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~~~vD~~~~a~~~~G~~~~~~~~~~g~L~~~v~G~~~ 280 (312)
T 2i99_A 208 ---EPILFG--EWVKPGAHINAVGASRPDW-RELDDELMKEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKP 280 (312)
T ss_dssp ---SCCBCG--GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSEEEESCHHHHHHHCHHHHTTTCCCCEEHHHHHHTSSC
T ss_pred ---CcccCH--HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCEEEECCHHHHHhhcCCcccChhhccccHHHHhCCCCC
Confidence 233332 5688999999998888754 5666777778899999 6773343 3344555 666777654
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.1e-11 Score=124.69 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=77.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHh-CCCcEEEEe---CChHHHHHHHHhhc------ccCC------CCee-eeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAE-KGFPISVYN---RTTSKVDETLDRAH------REGQ------LPLT-GHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~-~G~~V~v~d---r~~~~~~~l~~~~~------~~g~------~~i~-~~~s~~e~v~ 68 (505)
+|||+|||+|.||..+|..|++ +|++|++|+ |++++++.+.+... ..++ .++. .++++++++.
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 81 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS 81 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence 4699999999999999999998 599999999 88888877543321 0000 0122 5678888777
Q ss_pred hcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
. +|+||++||+. ..+++++++.+.+.++.+|++..+
T Consensus 82 ~---aD~Vilav~~~-~~~~v~~~l~~~l~~~~ivv~~~~ 117 (404)
T 3c7a_A 82 G---ADVVILTVPAF-AHEGYFQAMAPYVQDSALIVGLPS 117 (404)
T ss_dssp T---CSEEEECSCGG-GHHHHHHHHTTTCCTTCEEEETTC
T ss_pred C---CCEEEEeCchH-HHHHHHHHHHhhCCCCcEEEEcCC
Confidence 6 99999999996 689999999999999999998533
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.2e-12 Score=125.45 Aligned_cols=117 Identities=14% Similarity=0.146 Sum_probs=101.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+|||++++.+. +....+++++++. +|+|++++|....+
T Consensus 123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------------~~~~~~l~ell~~---aDiV~l~~P~t~~t 187 (290)
T 3gvx_A 123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV------------DVISESPADLFRQ---SDFVLIAIPLTDKT 187 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC------------SEECSSHHHHHHH---CSEEEECCCCCTTT
T ss_pred chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc------------ccccCChHHHhhc---cCeEEEEeeccccc
Confidence 58999999999999999999999999999999764221 2456799999988 99999999987777
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~ 138 (505)
+.++ .+.++.+++|.++||+|++.+.+...+.+.+++.++...+..|+..++
T Consensus 188 ~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 240 (290)
T 3gvx_A 188 RGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEP 240 (290)
T ss_dssp TTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTT
T ss_pred hhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCc
Confidence 7777 677888999999999999999999999999999888887777887765
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-11 Score=123.76 Aligned_cols=112 Identities=12% Similarity=0.158 Sum_probs=93.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.||..+|..|+..|++|.+|||++++.+.+.+. ++... ++++++.. +|+|++++|....
T Consensus 155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-------g~~~~-~l~e~l~~---aDvVi~~vp~~~~ 223 (330)
T 2gcg_A 155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF-------QAEFV-STPELAAQ---SDFIVVACSLTPA 223 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTT-------TCEEC-CHHHHHHH---CSEEEECCCCCTT
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhc-------CceeC-CHHHHHhh---CCEEEEeCCCChH
Confidence 3589999999999999999999999999999988765554332 24444 88888887 9999999998766
Q ss_pred HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
++.++ .++.+.+++|.++|++|++.+.++..+.+.+.+.++..
T Consensus 224 t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~g 267 (330)
T 2gcg_A 224 TEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAA 267 (330)
T ss_dssp TTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSE
T ss_pred HHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccE
Confidence 67676 56778899999999999999989999999888765543
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.25 E-value=4.1e-11 Score=122.34 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=98.8
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La-~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|||||+|.||..+|+.|. ..|++|.+|||++++.+...+.+ +....+++++++. +|+|++++|....
T Consensus 164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g-------~~~~~~l~ell~~---aDvVil~vp~~~~ 233 (348)
T 2w2k_A 164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALG-------AERVDSLEELARR---SDCVSVSVPYMKL 233 (348)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHT-------CEECSSHHHHHHH---CSEEEECCCCSGG
T ss_pred CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcC-------cEEeCCHHHHhcc---CCEEEEeCCCChH
Confidence 57999999999999999999 99999999999987655543322 4455688898887 9999999999877
Q ss_pred HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
++.++ .++.+.++++.+|||++++.+.+...+.+.+.+..+...+..|++.+
T Consensus 234 t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~E 286 (348)
T 2w2k_A 234 THHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFE 286 (348)
T ss_dssp GTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTT
T ss_pred HHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCC
Confidence 77777 46777899999999999999999999999988765554555666544
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4e-11 Score=121.76 Aligned_cols=120 Identities=18% Similarity=0.158 Sum_probs=97.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.||..+|..|+..|++|.+|||++++ +...+.+ +.. .++++++.. +|+|++++|....
T Consensus 150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~~-~~l~~~l~~---aDvVil~vp~~~~ 217 (334)
T 2dbq_A 150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELN-------AEF-KPLEDLLRE---SDFVVLAVPLTRE 217 (334)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHC-------CEE-CCHHHHHHH---CSEEEECCCCCTT
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcC-------ccc-CCHHHHHhh---CCEEEECCCCChH
Confidence 358999999999999999999999999999999876 4333322 333 588888887 9999999999876
Q ss_pred HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
++.++ .++.+.++++.++|++|++.+.++..+.+.+.+..+...+..|++.+
T Consensus 218 t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~E 270 (334)
T 2dbq_A 218 TYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEE 270 (334)
T ss_dssp TTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred HHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCC
Confidence 77777 46778899999999999999999989999888866655444555544
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.3e-13 Score=127.15 Aligned_cols=159 Identities=14% Similarity=0.128 Sum_probs=113.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|||||||+|.||..++.+|.+.|++| .+||+++ +.+ . .+.+++++++ ..+|+|++|+|+. .
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~------------~--~~~~~~~l~~--~~~DvVv~~~~~~-~ 62 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHE------------K--MVRGIDEFLQ--REMDVAVEAASQQ-A 62 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCT------------T--EESSHHHHTT--SCCSEEEECSCHH-H
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chh------------h--hcCCHHHHhc--CCCCEEEECCCHH-H
Confidence 48999999999999999999999997 6999985 211 1 4678999884 2399999999985 3
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhH---HHHHHHHHHCCCe-EEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHH
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNT---ERRIHEASQKGLL-YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t---~~~~~~l~~~gi~-~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~l 161 (505)
..+++. ..+..|..|++.++..+... +++.+..+++|.. ++++|++|+...+..+.. +++...+...++.
T Consensus 63 ~~~~~~---~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~ 136 (236)
T 2dc1_A 63 VKDYAE---KILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFSASE---LIEEIVLTTRKNW 136 (236)
T ss_dssp HHHHHH---HHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHHHHHTGG---GEEEEEEEEEEEG
T ss_pred HHHHHH---HHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChHHHHHhhc---cccEEEEEEEcCh
Confidence 333333 34567899999988765433 5666777777877 689999999877766543 5544444444455
Q ss_pred HHHHhcccCCCCceEEeCCCcc-hhhhhhHhhhHH
Q 010637 162 LQKVAAQVDDGPCVTYIGEGGS-GNFVKMVHNGIE 195 (505)
Q Consensus 162 l~~iga~~~~~~~v~~vG~~G~-g~~vK~v~N~i~ 195 (505)
++..+ ++++|.|+.+. +...|...|.+.
T Consensus 137 ~~~~~------~~~~~~G~~~~~~~~~~~~~n~~~ 165 (236)
T 2dc1_A 137 RQFGR------KGVIFEGSASEAAQKFPKNLNVAA 165 (236)
T ss_dssp GGTTS------CEEEEEEEHHHHHHHSTTCCHHHH
T ss_pred HHcCc------ceEEEeccHHHHHHHCCchHHHHH
Confidence 55455 77888887533 346677666654
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.8e-11 Score=123.41 Aligned_cols=121 Identities=10% Similarity=0.066 Sum_probs=100.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||..+|++|...|++|.+|||++...+.+.+.+ +....+++++++. +|+|++++|.....
T Consensus 165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~l~ell~~---aDvV~l~~Plt~~t 234 (351)
T 3jtm_A 165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETG-------AKFVEDLNEMLPK---CDVIVINMPLTEKT 234 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHC-------CEECSCHHHHGGG---CSEEEECSCCCTTT
T ss_pred CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCC-------CeEcCCHHHHHhc---CCEEEECCCCCHHH
Confidence 5899999999999999999999999999999875555444432 4566799999988 99999999987777
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
+.++ .+.++.+++|.++||++.+...+...+.+.+.+..+......|+..+
T Consensus 235 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~E 286 (351)
T 3jtm_A 235 RGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQ 286 (351)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSS
T ss_pred HHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCC
Confidence 7776 67778899999999999999999999999999876664444455444
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.3e-11 Score=121.45 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=98.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+|||++.. +...+. ++..+.+++++++. +|+|++++|....+
T Consensus 161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~-------g~~~~~~l~ell~~---aDiV~l~~Plt~~t 229 (352)
T 3gg9_A 161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERARAD-------GFAVAESKDALFEQ---SDVLSVHLRLNDET 229 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHHHHT-------TCEECSSHHHHHHH---CSEEEECCCCSTTT
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHHHhc-------CceEeCCHHHHHhh---CCEEEEeccCcHHH
Confidence 57999999999999999999999999999998643 333332 35667799999988 99999999987777
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg 136 (505)
+.++ .+.++.+++|.++||++++...+...+.+.+++..+......|+..
T Consensus 230 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~ 280 (352)
T 3gg9_A 230 RSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFET 280 (352)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSS
T ss_pred HHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCC
Confidence 7666 5777889999999999999999999999999988776544444443
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=7.8e-11 Score=119.39 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=95.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.||+.+|+.|...|++|.+|||++++.. + +....+++++++. +|+|++++|....
T Consensus 164 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g-------~~~~~~l~ell~~---aDvVil~vP~~~~ 228 (333)
T 3ba1_A 164 GKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT-----N-------YTYYGSVVELASN---SDILVVACPLTPE 228 (333)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----C-------SEEESCHHHHHHT---CSEEEECSCCCGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----C-------ceecCCHHHHHhc---CCEEEEecCCChH
Confidence 35899999999999999999999999999999986421 1 3456789998887 9999999999777
Q ss_pred HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCC
Q 010637 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg 136 (505)
++.++ .++.+.++++.+|||++++...++..+.+.+.+..+.....-|...
T Consensus 229 t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~ 280 (333)
T 3ba1_A 229 TTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFER 280 (333)
T ss_dssp GTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTT
T ss_pred HHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCC
Confidence 77777 4567778899999999999999999999999887665444444443
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.4e-11 Score=120.70 Aligned_cols=116 Identities=21% Similarity=0.336 Sum_probs=77.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+|||++++ .. ......+++++++. +|+|++++|....+
T Consensus 172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~-----~~-------~~~~~~sl~ell~~---aDvVil~vP~t~~t 236 (340)
T 4dgs_A 172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS-----GV-------DWIAHQSPVDLARD---SDVLAVCVAASAAT 236 (340)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT-----TS-------CCEECSSHHHHHHT---CSEEEECC------
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc-----cc-------CceecCCHHHHHhc---CCEEEEeCCCCHHH
Confidence 58999999999999999999999999999999764 11 24556799999988 99999999988788
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
+.++ ++.++.+++|.++||++.+...+...+.+.+++..+......|+..+
T Consensus 237 ~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~E 288 (340)
T 4dgs_A 237 QNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNE 288 (340)
T ss_dssp ----CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSS
T ss_pred HHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCC
Confidence 8888 67788899999999999999999999999998876665555565544
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-11 Score=123.96 Aligned_cols=120 Identities=14% Similarity=0.153 Sum_probs=99.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+|||+++..+.+. ......+++++++. +|+|++++|....+
T Consensus 138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---------~~~~~~~l~ell~~---aDvV~l~lPlt~~t 205 (324)
T 3evt_A 138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFH---------ETVAFTATADALAT---ANFIVNALPLTPTT 205 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCS---------EEEEGGGCHHHHHH---CSEEEECCCCCGGG
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHh---------hccccCCHHHHHhh---CCEEEEcCCCchHH
Confidence 5799999999999999999999999999999976532211 12345688899888 99999999988777
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~ 138 (505)
+.++ .+.+..+++|.++||+|++...+...+.+.+.+..+......|+..++
T Consensus 206 ~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EP 258 (324)
T 3evt_A 206 HHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEP 258 (324)
T ss_dssp TTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSS
T ss_pred HHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCC
Confidence 7777 677788999999999999999999999999998777666666666553
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-10 Score=117.41 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=99.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+|||++...+... + +..+.+++++++. +|+|++++|.....
T Consensus 174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g-------~~~~~~l~ell~~---sDvV~l~~Plt~~T 241 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--G-------AIYHDTLDSLLGA---SDIFLIAAPGRPEL 241 (345)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--T-------CEECSSHHHHHHT---CSEEEECSCCCGGG
T ss_pred CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--C-------CeEeCCHHHHHhh---CCEEEEecCCCHHH
Confidence 5799999999999999999999999999999875433211 2 4556799999987 99999999988777
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~ 138 (505)
+.++ .+.++.+++|.++||++.+...+...+.+.+.+..+......|+..++
T Consensus 242 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP 294 (345)
T 4g2n_A 242 KGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP 294 (345)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC
Confidence 7777 667788999999999999999999999999988766555555665554
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=7.5e-11 Score=120.14 Aligned_cols=120 Identities=16% Similarity=0.192 Sum_probs=97.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
-++|||||+|.||+.+|++|...|++|.+||+++++.. .... ++..+.+++++++. +|+|++++|....
T Consensus 168 g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~-------g~~~~~~l~ell~~---aDvV~l~~P~t~~ 236 (347)
T 1mx3_A 168 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-ERAL-------GLQRVSTLQDLLFH---SDCVTLHCGLNEH 236 (347)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-HHHH-------TCEECSSHHHHHHH---CSEEEECCCCCTT
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-Hhhc-------CCeecCCHHHHHhc---CCEEEEcCCCCHH
Confidence 35799999999999999999999999999999876421 1221 24556689999988 9999999999777
Q ss_pred HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCC
Q 010637 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg 136 (505)
++.++ ++.++.+++|.++||++++.+.+...+.+.+.+.++.....-|...
T Consensus 237 t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~ 288 (347)
T 1mx3_A 237 NHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHES 288 (347)
T ss_dssp CTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSS
T ss_pred HHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeeccc
Confidence 77777 6677889999999999999999999999999987765443334433
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.4e-11 Score=120.44 Aligned_cols=120 Identities=12% Similarity=0.142 Sum_probs=99.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+|||++.+.+...+.+ +.. .+++++++. +|+|++++|.....
T Consensus 146 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g-------~~~-~~l~ell~~---aDvV~l~~P~t~~t 214 (330)
T 4e5n_A 146 ATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLG-------LRQ-VACSELFAS---SDFILLALPLNADT 214 (330)
T ss_dssp CEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHT-------EEE-CCHHHHHHH---CSEEEECCCCSTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcC-------cee-CCHHHHHhh---CCEEEEcCCCCHHH
Confidence 5899999999999999999999999999999974444433332 333 489999988 99999999987677
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
+.++ .+.++.+++|.++||++++...+...+.+.+.+.++.....-|+..+
T Consensus 215 ~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E 266 (330)
T 4e5n_A 215 LHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEME 266 (330)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGG
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccc
Confidence 7677 57888899999999999999999999999999887765555566544
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-10 Score=118.00 Aligned_cols=120 Identities=16% Similarity=0.218 Sum_probs=95.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeC-ChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNR-TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr-~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|||||+|.||..+|++|...|++|.+||| ++++. ...+. ++....+++++++. +|+|++++|....
T Consensus 147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~-------g~~~~~~l~ell~~---aDvVil~~p~~~~ 215 (320)
T 1gdh_A 147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEASY-------QATFHDSLDSLLSV---SQFFSLNAPSTPE 215 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHHHH-------TCEECSSHHHHHHH---CSEEEECCCCCTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhhhc-------CcEEcCCHHHHHhh---CCEEEEeccCchH
Confidence 5799999999999999999999999999999 87653 22222 24555689999887 9999999998766
Q ss_pred HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
++.++ +...+.+++|.++||++++.+.+...+.+.+++..+.-.+.-|+..+
T Consensus 216 t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~e 268 (320)
T 1gdh_A 216 TRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGE 268 (320)
T ss_dssp TTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTT
T ss_pred HHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 77777 55778899999999999998888888899888765543333344443
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.5e-11 Score=119.65 Aligned_cols=119 Identities=12% Similarity=0.145 Sum_probs=95.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.||..+|+.|...|++|.+|||++++ +...+. ++.. .++++++.. +|+|++++|....
T Consensus 146 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~-------g~~~-~~l~e~l~~---aDiVil~vp~~~~ 213 (333)
T 2d0i_A 146 GKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKEL-------KARY-MDIDELLEK---SDIVILALPLTRD 213 (333)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHH-------TEEE-CCHHHHHHH---CSEEEECCCCCTT
T ss_pred cCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhc-------Ccee-cCHHHHHhh---CCEEEEcCCCChH
Confidence 358999999999999999999999999999999876 333322 2444 488888877 9999999999867
Q ss_pred HHHHHH-HHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 86 VDQTIA-ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 86 v~~vl~-~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
++.++. ++.+.++++ ++||+|++...++..+.+.+.+..+...+..+++.+
T Consensus 214 t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~E 265 (333)
T 2d0i_A 214 TYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKE 265 (333)
T ss_dssp TTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSS
T ss_pred HHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCC
Confidence 777773 567788899 999999999999988888888765555555565543
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=117.71 Aligned_cols=119 Identities=12% Similarity=0.156 Sum_probs=95.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+|||++++. ...+. ++.. .++++++.. +|+|++++|....+
T Consensus 143 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~-------g~~~-~~l~ell~~---aDvVvl~~P~~~~t 210 (313)
T 2ekl_A 143 KTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKI-------NAKA-VSLEELLKN---SDVISLHVTVSKDA 210 (313)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHT-------TCEE-CCHHHHHHH---CSEEEECCCCCTTS
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HHHhc-------Ccee-cCHHHHHhh---CCEEEEeccCChHH
Confidence 589999999999999999999999999999998764 23322 2343 488898887 99999999987666
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
+.++ +...+.+++|.++||++++.+.+...+.+.+++.++.-...-|...+
T Consensus 211 ~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~e 262 (313)
T 2ekl_A 211 KPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNE 262 (313)
T ss_dssp CCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSS
T ss_pred HHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCC
Confidence 6666 56677899999999999999999999999998766543333344443
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-10 Score=116.14 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=94.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||..+|++|...|++|.+|||++++ +...+.+ +.. .+++++++. +|+|++++|.....
T Consensus 143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~~-~~l~ell~~---aDvV~l~~p~~~~t 210 (307)
T 1wwk_A 143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVN-------GKF-VDLETLLKE---SDVVTIHVPLVEST 210 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTT-------CEE-CCHHHHHHH---CSEEEECCCCSTTT
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcC-------ccc-cCHHHHHhh---CCEEEEecCCChHH
Confidence 57999999999999999999999999999999876 3333322 333 488898887 99999999987666
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg 136 (505)
+.++ ++..+.+++|.++||++++...+...+.+.+++..+.-.+.-|++.
T Consensus 211 ~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~ 261 (307)
T 1wwk_A 211 YHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEE 261 (307)
T ss_dssp TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSS
T ss_pred hhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCC
Confidence 7766 5677889999999999999988998999999886554333334443
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-11 Score=123.42 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=96.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+|||++...+.+. ......+++++++. +|+|++++|....+
T Consensus 141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---------~~~~~~~l~ell~~---aDvV~l~lPlt~~T 208 (324)
T 3hg7_A 141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFD---------QVYQLPALNKMLAQ---ADVIVSVLPATRET 208 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCS---------EEECGGGHHHHHHT---CSEEEECCCCCSSS
T ss_pred ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhh---------cccccCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 5899999999999999999999999999999974322110 12335688898887 99999999987777
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~ 138 (505)
+.++ .+.+..+++|.++||+|.+...+...+.+.+.+..+......|+..++
T Consensus 209 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP 261 (324)
T 3hg7_A 209 HHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEP 261 (324)
T ss_dssp TTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSS
T ss_pred HHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCC
Confidence 7666 456677899999999999999999999999998777554445555443
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.7e-11 Score=121.79 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=96.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
-++|||||+|.||+.+|++|...|++|.+|||+++..+.+. ......+++++++. +|+|++++|....
T Consensus 139 g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---------~~~~~~~l~ell~~---aDiV~l~~Plt~~ 206 (315)
T 3pp8_A 139 EFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVE---------SYVGREELRAFLNQ---TRVLINLLPNTAQ 206 (315)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCE---------EEESHHHHHHHHHT---CSEEEECCCCCGG
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhh---------hhcccCCHHHHHhh---CCEEEEecCCchh
Confidence 36899999999999999999999999999999976432110 01122577888877 9999999998878
Q ss_pred HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
.+.++ .+.++.+++|.++||++.+...++..+.+.+.+..+......|+..+
T Consensus 207 t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~E 259 (315)
T 3pp8_A 207 TVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQE 259 (315)
T ss_dssp GTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSS
T ss_pred hhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCC
Confidence 88777 67788899999999999999999999999998876655445565544
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.7e-10 Score=115.73 Aligned_cols=118 Identities=16% Similarity=0.183 Sum_probs=96.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+|||+++. . .+. .+. ..+++++++. +|+|++++|.....
T Consensus 149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~-~~~-------~~~-~~~l~ell~~---aDvV~l~~Plt~~t 214 (343)
T 2yq5_A 149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNP--E-FEP-------FLT-YTDFDTVLKE---ADIVSLHTPLFPST 214 (343)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCG--G-GTT-------TCE-ECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhh--h-hhc-------ccc-ccCHHHHHhc---CCEEEEcCCCCHHH
Confidence 57999999999999999999999999999999864 1 111 122 3489999988 99999999987676
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~ 138 (505)
+.++ .+.+..+++|.++||++.+...+...+.+.+.+..+.....-|+..++
T Consensus 215 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP 267 (343)
T 2yq5_A 215 ENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGES 267 (343)
T ss_dssp TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGG
T ss_pred HHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCC
Confidence 7666 567788999999999999999999999999988766544445555544
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.3e-10 Score=121.91 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=109.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||..+|++|...|++|.+||+++.. +...+.+ +... +++++++. +|+|++++|....+
T Consensus 143 ~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g-------~~~~-~l~e~~~~---aDvV~l~~P~~~~t 210 (529)
T 1ygy_A 143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLG-------IELL-SLDDLLAR---ADFISVHLPKTPET 210 (529)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHHHHT-------CEEC-CHHHHHHH---CSEEEECCCCSTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcC-------cEEc-CHHHHHhc---CCEEEECCCCchHH
Confidence 58999999999999999999999999999998753 3333332 3444 88898887 99999999998677
Q ss_pred HHHHHH-HHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHH----hhcCC-ccc---cC-CCHHHHH
Q 010637 87 DQTIAA-LSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEG----ARHGP-SLM---PG-GSFEAYN 156 (505)
Q Consensus 87 ~~vl~~-l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~----a~~G~-~im---~g-g~~ea~~ 156 (505)
+.++.. +.+.+++|.+|||++++.+.+...+.+.+.+..+......+.++++. -...+ .++ .+ .+.++.+
T Consensus 211 ~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~ 290 (529)
T 1ygy_A 211 AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQD 290 (529)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHH
T ss_pred HHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHH
Confidence 778754 78889999999999999999998888888876554333344544432 22334 332 24 4667766
Q ss_pred H-----HHHHHHHHhc
Q 010637 157 N-----IRDILQKVAA 167 (505)
Q Consensus 157 ~-----v~~ll~~iga 167 (505)
+ ++.+.+.+++
T Consensus 291 ~~~~~~~~~l~~~l~~ 306 (529)
T 1ygy_A 291 RAGTDVAESVRLALAG 306 (529)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 5 5566666653
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-10 Score=116.41 Aligned_cols=119 Identities=9% Similarity=0.082 Sum_probs=95.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||..+|++|...|++|.+|||++++ +...+.+ +.. .+++++++. +|+|++++|....+
T Consensus 166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~~-~~l~ell~~---aDvV~l~~P~t~~t 233 (335)
T 2g76_A 166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSASFG-------VQQ-LPLEEIWPL---CDFITVHTPLLPST 233 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTT-------CEE-CCHHHHGGG---CSEEEECCCCCTTT
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcC-------cee-CCHHHHHhc---CCEEEEecCCCHHH
Confidence 57999999999999999999999999999998765 2333322 333 488888887 99999999998777
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
+.++ ++.++.+++|.++||+|++...+...+.+.+.+..+.-...-|+..+
T Consensus 234 ~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~E 285 (335)
T 2g76_A 234 TGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEE 285 (335)
T ss_dssp TTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSS
T ss_pred HHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCC
Confidence 7777 57788899999999999999999999999998865543333344444
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-10 Score=120.26 Aligned_cols=120 Identities=13% Similarity=0.044 Sum_probs=96.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+|||++.+.+...+.+ +..+.+++++++. +|+|++++|....+
T Consensus 192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G-------~~~~~~l~ell~~---aDvV~l~~Plt~~t 261 (393)
T 2nac_A 192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELN-------LTWHATREDMYPV---CDVVTLNCPLHPET 261 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHT-------CEECSSHHHHGGG---CSEEEECSCCCTTT
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcC-------ceecCCHHHHHhc---CCEEEEecCCchHH
Confidence 5899999999999999999999999999999875544333332 4455689998887 99999999987677
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg 136 (505)
+.++ ++.++.+++|.++||++++...+...+.+.+.+..+.....-|+..
T Consensus 262 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~ 312 (393)
T 2nac_A 262 EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFP 312 (393)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSS
T ss_pred HHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCC
Confidence 7777 5777889999999999999999999999999876554433344443
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-10 Score=118.57 Aligned_cols=120 Identities=12% Similarity=0.020 Sum_probs=98.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|||||+|.||..+|++|...|++ |.+|||++.+.+...+. ++....+++++++. +|+|++++|....
T Consensus 165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~-------g~~~~~~l~ell~~---aDvV~l~~P~t~~ 234 (364)
T 2j6i_A 165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKV-------GARRVENIEELVAQ---ADIVTVNAPLHAG 234 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHT-------TEEECSSHHHHHHT---CSEEEECCCCSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhc-------CcEecCCHHHHHhc---CCEEEECCCCChH
Confidence 5799999999999999999999997 99999988655544332 24556789999887 9999999999877
Q ss_pred HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCC
Q 010637 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg 136 (505)
.+.++ +..++.+++|.+|||++++...+...+.+.+.+..+.-...-|+-.
T Consensus 235 t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~ 286 (364)
T 2j6i_A 235 TKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFP 286 (364)
T ss_dssp TTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSS
T ss_pred HHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCC
Confidence 77777 5677889999999999999999999999999987665443344433
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.1e-10 Score=114.47 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=94.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+||+++.. +...+.+ +. ..+++++++. +|+|++++|.....
T Consensus 177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g-------~~-~~~l~ell~~---aDvV~l~~Plt~~T 244 (365)
T 4hy3_A 177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SMLEENG-------VE-PASLEDVLTK---SDFIFVVAAVTSEN 244 (365)
T ss_dssp SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHHHTT-------CE-ECCHHHHHHS---CSEEEECSCSSCC-
T ss_pred CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHHhhcC-------ee-eCCHHHHHhc---CCEEEEcCcCCHHH
Confidence 57999999999999999999999999999998643 3333322 33 4589999987 99999999998888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
+.++ .+.++.+++|.++||++.+...+...+.+.+++..+. ....|+..+
T Consensus 245 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~E 295 (365)
T 4hy3_A 245 KRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEE 295 (365)
T ss_dssp --CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSS
T ss_pred HhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCC
Confidence 8887 6778889999999999999999999999999887665 444555443
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.06 E-value=4e-10 Score=117.58 Aligned_cols=146 Identities=16% Similarity=0.112 Sum_probs=99.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhC------CCcEEEEeCChHH-HHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCcE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK------GFPISVYNRTTSK-VDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~------G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~----~~s~~e~v~~l~~adv 75 (505)
++|||||+|.||.++|++|.+. |++|.+.+|+.++ .+...+.+ +.. +.+++++++. +|+
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G-------~~v~d~ta~s~aEAa~~---ADV 124 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAG-------FTEESGTLGDIWETVSG---SDL 124 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTT-------CCTTTTCEEEHHHHHHH---CSE
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCC-------CEEecCCCCCHHHHHhc---CCE
Confidence 6899999999999999999999 9999988776543 33333333 332 3588899988 999
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHH--HHHHCCCeEEe-CCCCCCHH-------H---hhc
Q 010637 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH--EASQKGLLYLG-MGVSGGEE-------G---ARH 142 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~--~l~~~gi~~i~-~pvsGg~~-------~---a~~ 142 (505)
||++||+. ...++++++.+.+++|.+|+.+... ....+.+ .....++.++- +|-..|.. + ...
T Consensus 125 VILaVP~~-~~~eVl~eI~p~LK~GaILs~AaGf---~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~ 200 (525)
T 3fr7_A 125 VLLLISDA-AQADNYEKIFSHMKPNSILGLSHGF---LLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGA 200 (525)
T ss_dssp EEECSCHH-HHHHHHHHHHHHSCTTCEEEESSSH---HHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTC
T ss_pred EEECCChH-HHHHHHHHHHHhcCCCCeEEEeCCC---CHHHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccC
Confidence 99999996 4567888999999999998776553 2212221 11123455553 46444432 1 013
Q ss_pred CC-ccc-cCC--CHHHHHHHHHHHHHHh
Q 010637 143 GP-SLM-PGG--SFEAYNNIRDILQKVA 166 (505)
Q Consensus 143 G~-~im-~gg--~~ea~~~v~~ll~~ig 166 (505)
|. +++ +.. +.++.+.+..++..+|
T Consensus 201 Gv~~liAv~qd~tgea~e~alala~aiG 228 (525)
T 3fr7_A 201 GINSSFAVHQDVDGRATDVALGWSVALG 228 (525)
T ss_dssp SCCEEEEEEECSSSCHHHHHHHHHHHTT
T ss_pred CccEEEEcCCCCCHHHHHHHHHHHHHCC
Confidence 44 233 333 3478899999999999
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-10 Score=114.85 Aligned_cols=112 Identities=11% Similarity=0.161 Sum_probs=93.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+|||+++ +. + .....+++++++. +|+|++++|....+
T Consensus 125 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~----~-------~~~~~~l~ell~~---aDvV~l~~P~~~~t 188 (303)
T 1qp8_A 125 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG----P-------WRFTNSLEEALRE---ARAAVCALPLNKHT 188 (303)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS----S-------SCCBSCSHHHHTT---CSEEEECCCCSTTT
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc----C-------cccCCCHHHHHhh---CCEEEEeCcCchHH
Confidence 5799999999999999999999999999999876 11 1 1235688888887 99999999998777
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (505)
+.++ ++..+.+++|.++||+|++.+.+...+.+.+.+..+...+.-|+
T Consensus 189 ~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~ 237 (303)
T 1qp8_A 189 RGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 237 (303)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred HHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccC
Confidence 7777 47888899999999999999999999999998876654444444
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.8e-10 Score=118.02 Aligned_cols=117 Identities=14% Similarity=0.178 Sum_probs=92.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+||+++... .. +.....+++++++. +|+|++++|.....
T Consensus 157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~-----~~------~~~~~~sl~ell~~---aDvV~lhvPlt~~T 222 (416)
T 3k5p_A 157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ-----YG------NVKPAASLDELLKT---SDVVSLHVPSSKST 222 (416)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC-----BT------TBEECSSHHHHHHH---CSEEEECCCC----
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc-----cc------CcEecCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 579999999999999999999999999999985321 00 24556899999988 99999999998777
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
+.++ .+.+..+++|.++||+|.+...+...+.+.+++..+......|+..+
T Consensus 223 ~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~E 274 (416)
T 3k5p_A 223 SKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVE 274 (416)
T ss_dssp -CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSC
T ss_pred hhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCC
Confidence 7777 56778899999999999999999999999998876654444555544
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.2e-10 Score=112.87 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=96.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+|||++++. + +.. +....+++++++. +|+|++++|....+
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-------~~~~~~l~ell~~---aDvV~l~~p~~~~t 213 (333)
T 1j4a_A 147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-EKK-------GYYVDSLDDLYKQ---ADVISLHVPDVPAN 213 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-HHT-------TCBCSCHHHHHHH---CSEEEECSCCCGGG
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-Hhh-------CeecCCHHHHHhh---CCEEEEcCCCcHHH
Confidence 579999999999999999999999999999998764 2 221 1234588998887 99999999988777
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
+.++ +...+.+++|.++||++++...+...+.+.+++..+.....-|+-.+
T Consensus 214 ~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~E 265 (333)
T 1j4a_A 214 VHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGE 265 (333)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTC
T ss_pred HHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCC
Confidence 7777 45677899999999999999999999999999876655444455444
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-10 Score=116.34 Aligned_cols=117 Identities=14% Similarity=0.164 Sum_probs=96.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch-
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~- 85 (505)
++|||||+|.||+.+|++|...|++|.+||++.+... . .....+++++++. +|+|++++|....
T Consensus 120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-----~-------~~~~~sl~ell~~---aDiV~l~~Plt~~g 184 (381)
T 3oet_A 120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG-----D-------EGDFRTLDELVQE---ADVLTFHTPLYKDG 184 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT-----C-------CSCBCCHHHHHHH---CSEEEECCCCCCSS
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc-----c-------CcccCCHHHHHhh---CCEEEEcCcCCccc
Confidence 5799999999999999999999999999998543211 1 1235789999988 9999999998766
Q ss_pred ---HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHH
Q 010637 86 ---VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 86 ---v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~ 138 (505)
.+.++ .+.+..+++|.++||+|.+...+...+.+.+++.++......|+..++
T Consensus 185 ~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP 241 (381)
T 3oet_A 185 PYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP 241 (381)
T ss_dssp TTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTT
T ss_pred cccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCC
Confidence 66666 567778999999999999999999999999998877776666776554
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.7e-10 Score=116.46 Aligned_cols=107 Identities=16% Similarity=0.216 Sum_probs=91.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+++...|++|.+|||++... .+ ++....+++++++. +|+|++++|....+
T Consensus 146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-----~~------~~~~~~~l~ell~~---aDvV~l~~P~t~~t 211 (404)
T 1sc6_A 146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-----LG------NATQVQHLSDLLNM---SDVVSLHVPENPST 211 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC-----CT------TCEECSCHHHHHHH---CSEEEECCCSSTTT
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc-----cC------CceecCCHHHHHhc---CCEEEEccCCChHH
Confidence 579999999999999999999999999999986431 11 24566799999988 99999999998777
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCe
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+.++ ++.++.+++|.++||+|++...+...+.+.+++..+.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 253 (404)
T 1sc6_A 212 KNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA 253 (404)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEE
T ss_pred HHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCcc
Confidence 7777 5677889999999999999999999999999876554
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.7e-10 Score=112.66 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=91.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||..+|++|...|++|.+|||++++.. . ...+++++++. +|+|++++|.....
T Consensus 145 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------~--------~~~~l~ell~~---aDvV~l~~p~~~~t 207 (311)
T 2cuk_A 145 LTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------Y--------PFLSLEELLKE---ADVVSLHTPLTPET 207 (311)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------S--------CBCCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------c--------ccCCHHHHHhh---CCEEEEeCCCChHH
Confidence 5799999999999999999999999999999986532 1 13588898887 99999999998767
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg 136 (505)
+.++ .+..+.+++|.++||++++...+...+.+.++ ..+.....-+++.
T Consensus 208 ~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~ 257 (311)
T 2cuk_A 208 HRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDP 257 (311)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSS
T ss_pred HhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCC
Confidence 7777 36777899999999999999888888988888 6554333334443
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-09 Score=110.88 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=97.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+|||++++. + +.. +. ..+++++++. +|+|++++|.....
T Consensus 146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-------~~-~~~l~ell~~---aDvV~~~~P~~~~t 211 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPD-------FD-YVSLEDLFKQ---SDVIDLHVPGIEQN 211 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTT-------CE-ECCHHHHHHH---CSEEEECCCCCGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhc-------cc-cCCHHHHHhc---CCEEEEcCCCchhH
Confidence 579999999999999999999999999999987642 1 111 22 3488998887 99999999998777
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~ 138 (505)
+.++ .+.++.+++|.++||+|++...+...+.+.+++..+.-...-|+-.++
T Consensus 212 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP 264 (333)
T 1dxy_A 212 THIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET 264 (333)
T ss_dssp TTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCC
Confidence 7777 567788999999999999999999999999998766655555666554
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-09 Score=112.60 Aligned_cols=116 Identities=10% Similarity=0.148 Sum_probs=93.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch-
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~- 85 (505)
++|||||+|.||..+|++|...|++|.+||++++.. ..+ . ...+++++++. +|+|++++|....
T Consensus 117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g-------~-~~~~l~ell~~---aDvV~l~~Plt~~g 181 (380)
T 2o4c_A 117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR----EPD-------G-EFVSLERLLAE---ADVISLHTPLNRDG 181 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH----STT-------S-CCCCHHHHHHH---CSEEEECCCCCSSS
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh----ccC-------c-ccCCHHHHHHh---CCEEEEeccCcccc
Confidence 589999999999999999999999999999876532 111 1 24689999887 9999999998766
Q ss_pred ---HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 86 ---VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 86 ---v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
...++ ++.++.+++|.++||+|++...+...+.+.+.+..+.....-|...+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~E 237 (380)
T 2o4c_A 182 EHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGE 237 (380)
T ss_dssp SSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTT
T ss_pred ccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccC
Confidence 66666 56778899999999999999999999999998876655444455443
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.93 E-value=9e-10 Score=111.58 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=96.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|++|...|++|.+|||++++. + +. .+. ..++++++.. +|+|++++|.....
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~-------~~~-~~~l~ell~~---aDvV~~~~p~t~~t 212 (331)
T 1xdw_A 147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-ED-------YCT-QVSLDEVLEK---SDIITIHAPYIKEN 212 (331)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TT-------TCE-ECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hh-------ccc-cCCHHHHHhh---CCEEEEecCCchHH
Confidence 579999999999999999999999999999987643 1 11 122 3489998887 99999999987766
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~ 138 (505)
+.++ ++..+.+++|.++||+|++...+...+.+.+++.++.....-|+-.++
T Consensus 213 ~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP 265 (331)
T 1xdw_A 213 GAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEA 265 (331)
T ss_dssp CCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGG
T ss_pred HHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCC
Confidence 6666 567788999999999999999999999999998776655555665554
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-09 Score=95.51 Aligned_cols=105 Identities=19% Similarity=0.176 Sum_probs=84.1
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGl----G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|+|||+ |.||..++++|.+.||+|+.+|++.+.+ . ++..+.|++|+.+. +|++++++|+
T Consensus 15 ~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i---------~---G~~~~~s~~el~~~---vDlvii~vp~ 79 (138)
T 1y81_A 15 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI---------E---GLKCYRSVRELPKD---VDVIVFVVPP 79 (138)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE---------T---TEECBSSGGGSCTT---CCEEEECSCH
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE---------C---CeeecCCHHHhCCC---CCEEEEEeCH
Confidence 57999999 9999999999999999866666553221 1 36778899998876 9999999996
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
..+.++++++.+ ...+.+|++.++. .+++.+.+++.|+.+++..
T Consensus 80 -~~v~~v~~~~~~-~g~~~i~~~~~~~----~~~l~~~a~~~Gi~~igpn 123 (138)
T 1y81_A 80 -KVGLQVAKEAVE-AGFKKLWFQPGAE----SEEIRRFLEKAGVEYSFGR 123 (138)
T ss_dssp -HHHHHHHHHHHH-TTCCEEEECTTSC----CHHHHHHHHHHTCEEECSC
T ss_pred -HHHHHHHHHHHH-cCCCEEEEcCccH----HHHHHHHHHHCCCEEEcCC
Confidence 688889988776 4566788888774 4677777888899999843
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-09 Score=104.45 Aligned_cols=108 Identities=20% Similarity=0.208 Sum_probs=83.6
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch--
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP-- 85 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~-- 85 (505)
+|+|||+|.||.+++..|.+.|++|+++||++++.+++.+... .. ..+++++ .. +|+||+++|.+..
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~------~~-~~~~~~~-~~---~Divi~~tp~~~~~~ 186 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFG------LR-AVPLEKA-RE---ARLLVNATRVGLEDP 186 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHT------CE-ECCGGGG-GG---CSEEEECSSTTTTCT
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------cc-hhhHhhc-cC---CCEEEEccCCCCCCC
Confidence 7999999999999999999999999999999999888876532 23 4577776 65 9999999998731
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+..++. .+.+++|.+|+|++.. |..+ ++.+.++++|+.+++
T Consensus 187 ~~~~l~--~~~l~~g~~viD~~~~-p~~t-~l~~~a~~~g~~~v~ 227 (263)
T 2d5c_A 187 SASPLP--AELFPEEGAAVDLVYR-PLWT-RFLREAKAKGLKVQT 227 (263)
T ss_dssp TCCSSC--GGGSCSSSEEEESCCS-SSSC-HHHHHHHHTTCEEEC
T ss_pred CCCCCC--HHHcCCCCEEEEeecC-Cccc-HHHHHHHHCcCEEEC
Confidence 112222 3567889999999887 4455 466777778887764
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.7e-09 Score=103.66 Aligned_cols=137 Identities=16% Similarity=0.131 Sum_probs=95.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|+|||+|.||..+|+.|...|.+|.+|||++++.+.+.+.+. ......+++++++. +|+|++++|.+..
T Consensus 158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~-----~~~~~~~l~~~l~~---aDvVi~~~p~~~i- 228 (300)
T 2rir_A 158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGL-----VPFHTDELKEHVKD---IDICINTIPSMIL- 228 (300)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-----EEEEGGGHHHHSTT---CSEEEECCSSCCB-
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC-----eEEchhhHHHHhhC---CCEEEECCChhhh-
Confidence 57999999999999999999999999999999988766554321 11113466666655 9999999998532
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC-CCCCHHHhhcCCccccCCCHHHHHHHHHHHHHH
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG-VSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p-vsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~i 165 (505)
. +.....++++.++||++....... + +.....|+.++++| +.|+...+..+. -.++.+.+++..+
T Consensus 229 ~---~~~~~~mk~g~~lin~a~g~~~~~--~-~~a~~~G~~~i~~pg~~g~v~~a~a~~--------l~~~~~~~~l~~~ 294 (300)
T 2rir_A 229 N---QTVLSSMTPKTLILDLASRPGGTD--F-KYAEKQGIKALLAPGLPGIVAPKTAGQ--------ILANVLSKLLAEI 294 (300)
T ss_dssp C---HHHHTTSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECCCHHHHHCHHHHHH--------HHHHHHHHHHHHH
T ss_pred C---HHHHHhCCCCCEEEEEeCCCCCcC--H-HHHHHCCCEEEECCCCCCcHHHHHHHH--------HHHHHHHHHHHHh
Confidence 2 234567889999999998643332 2 34456699999887 555443333321 2245566777666
Q ss_pred h
Q 010637 166 A 166 (505)
Q Consensus 166 g 166 (505)
+
T Consensus 295 ~ 295 (300)
T 2rir_A 295 Q 295 (300)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-09 Score=106.04 Aligned_cols=109 Identities=16% Similarity=0.217 Sum_probs=82.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch-
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~- 85 (505)
++|+|||+|.||.+++..|.+.|++|++|||++++.+++.+.. ++....+++++++. +|+||.++|.+..
T Consensus 130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~------g~~~~~~~~~~~~~---aDiVi~atp~~~~~ 200 (275)
T 2hk9_A 130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF------PLEVVNSPEEVIDK---VQVIVNTTSVGLKD 200 (275)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTS------CEEECSCGGGTGGG---CSEEEECSSTTSST
T ss_pred CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHc------CCeeehhHHhhhcC---CCEEEEeCCCCCCC
Confidence 5899999999999999999999999999999999988876542 35555577777666 9999999998742
Q ss_pred -HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 86 -VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 -v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+..++. .+.++++.+|+|+++ . .+ ++.+..+++|+.+++
T Consensus 201 ~~~~~i~--~~~l~~g~~viDv~~-~--~t-~ll~~a~~~g~~~v~ 240 (275)
T 2hk9_A 201 EDPEIFN--YDLIKKDHVVVDIIY-K--ET-KLLKKAKEKGAKLLD 240 (275)
T ss_dssp TCCCSSC--GGGCCTTSEEEESSS-S--CC-HHHHHHHHTTCEEEC
T ss_pred CCCCCCC--HHHcCCCCEEEEcCC-C--hH-HHHHHHHHCcCEEEC
Confidence 111221 345788999999988 2 22 344555667887764
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.84 E-value=4.1e-08 Score=85.45 Aligned_cols=116 Identities=14% Similarity=0.065 Sum_probs=79.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHh-hcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVL-SIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~-~l~~advIil~vp~ 82 (505)
.|+|.|+|+|.||..++..|.+.|++|.++|+++++.+.+.+.... .... ..+.+.+.+ .++.+|+||+++|+
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~----~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~ 79 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDA----LVINGDCTKIKTLEDAGIEDADMYIAVTGK 79 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSS----EEEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCc----EEEEcCCCCHHHHHHcCcccCCEEEEeeCC
Confidence 4689999999999999999999999999999999988877653110 0111 123333322 25569999999988
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
. .....+..+.+.+.++.+|+..++.. . .+.+.+.|+.++-.|
T Consensus 80 ~-~~~~~~~~~~~~~~~~~ii~~~~~~~--~----~~~l~~~g~~~v~~p 122 (140)
T 1lss_A 80 E-EVNLMSSLLAKSYGINKTIARISEIE--Y----KDVFERLGVDVVVSP 122 (140)
T ss_dssp H-HHHHHHHHHHHHTTCCCEEEECSSTT--H----HHHHHHTTCSEEECH
T ss_pred c-hHHHHHHHHHHHcCCCEEEEEecCHh--H----HHHHHHcCCCEEECH
Confidence 5 44444555666677778887655432 2 234556788776655
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.7e-08 Score=101.63 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=75.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHH----hhcccC-CCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLD----RAHREG-QLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~----~~~~~g-~~~i~~~~s~~e~v~~l~~advIil 78 (505)
+.+||+|||+|.||.++|..|+.+|+ +|.+||+++++++.... .....+ ..++..++++ +.++. +|+||+
T Consensus 3 ~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~---aDiVi~ 78 (317)
T 2ewd_A 3 ERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISG---SDVVII 78 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT---CSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC---CCEEEE
Confidence 34689999999999999999999999 99999999987765321 100000 0146666676 44444 999999
Q ss_pred EcCCC---------------chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHH
Q 010637 79 LVKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRI 118 (505)
Q Consensus 79 ~vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~ 118 (505)
+++.+ ...++++..+.++. ++.+++..||.....+..+.
T Consensus 79 avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~~~~~~~~~ 132 (317)
T 2ewd_A 79 TASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPLDVMVSHFQ 132 (317)
T ss_dssp CCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHH
T ss_pred eCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHH
Confidence 99321 23566677787775 58899988885433333333
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.1e-09 Score=93.89 Aligned_cols=105 Identities=12% Similarity=0.045 Sum_probs=83.0
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCCh--HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTT--SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGl----G~MG~~lA~~La~~G~~V~v~dr~~--~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.+|+|||+ |.||..++.+|.+.||+|+.+|++. +.+ . ++..+.|++|+.+. +|++++++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i---------~---G~~~~~sl~el~~~---~Dlvii~v 78 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL---------L---GQQGYATLADVPEK---VDMVDVFR 78 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE---------T---TEECCSSTTTCSSC---CSEEECCS
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc---------C---CeeccCCHHHcCCC---CCEEEEEe
Confidence 47999999 8999999999999999977776664 221 1 36777888888765 89999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
|+ ..+.++++++.+ ...+.++++.++. .+++.+.+++.|+.+++..
T Consensus 79 p~-~~v~~v~~~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~igpn 124 (145)
T 2duw_A 79 NS-EAAWGVAQEAIA-IGAKTLWLQLGVI----NEQAAVLAREAGLSVVMDR 124 (145)
T ss_dssp CS-THHHHHHHHHHH-HTCCEEECCTTCC----CHHHHHHHHTTTCEEECSC
T ss_pred CH-HHHHHHHHHHHH-cCCCEEEEcCChH----HHHHHHHHHHcCCEEEcCC
Confidence 97 588999988776 4456788887654 5677778888999999743
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.74 E-value=8e-09 Score=91.45 Aligned_cols=92 Identities=16% Similarity=0.259 Sum_probs=73.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|+|||+|.||..++..|...|++|.++||++++.+++.+.... .+....++.++++. +|+||.++|.+..
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~----~~~~~~~~~~~~~~---~Divi~at~~~~~ 93 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEY----EYVLINDIDSLIKN---NDVIITATSSKTP 93 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTC----EEEECSCHHHHHHT---CSEEEECSCCSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCC----ceEeecCHHHHhcC---CCEEEEeCCCCCc
Confidence 3589999999999999999999999999999999999887765421 24466788888877 9999999998643
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+ +. ...+.+|.+++|.+..
T Consensus 94 ~---~~--~~~l~~g~~vid~~~p 112 (144)
T 3oj0_A 94 I---VE--ERSLMPGKLFIDLGNP 112 (144)
T ss_dssp S---BC--GGGCCTTCEEEECCSS
T ss_pred E---ee--HHHcCCCCEEEEccCC
Confidence 2 11 1457789999998763
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-07 Score=83.35 Aligned_cols=121 Identities=14% Similarity=0.125 Sum_probs=75.3
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhh--cCCCcEEEE
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLS--IQRPRSVII 78 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~--l~~advIil 78 (505)
|....+++|.|+|+|.+|..+|..|.+.|++|.++|+++++++.+.+.+... +....+..+.... ++.+|+||+
T Consensus 1 m~~~~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~----~~gd~~~~~~l~~~~~~~~d~vi~ 76 (141)
T 3llv_A 1 MTENGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDA----VIADPTDESFYRSLDLEGVSAVLI 76 (141)
T ss_dssp -----CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEE----EECCTTCHHHHHHSCCTTCSEEEE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcE----EECCCCCHHHHHhCCcccCCEEEE
Confidence 4333456899999999999999999999999999999999998887654210 1222222333332 356999999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
++|+. .....+......+....+|.-..+.. . .+.+.+.|+..+-.|
T Consensus 77 ~~~~~-~~n~~~~~~a~~~~~~~iia~~~~~~--~----~~~l~~~G~~~vi~p 123 (141)
T 3llv_A 77 TGSDD-EFNLKILKALRSVSDVYAIVRVSSPK--K----KEEFEEAGANLVVLV 123 (141)
T ss_dssp CCSCH-HHHHHHHHHHHHHCCCCEEEEESCGG--G----HHHHHHTTCSEEEEH
T ss_pred ecCCH-HHHHHHHHHHHHhCCceEEEEEcChh--H----HHHHHHcCCCEEECH
Confidence 99964 33333333333333556666554432 2 234455677655433
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-07 Score=83.50 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=76.5
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcC
Q 010637 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVK 81 (505)
Q Consensus 4 ~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp 81 (505)
.+..+|.|+|+|.+|..+|..|.+.|++|.++|+++++++.+.+.+... +....+..++.. .+.++|.||+++|
T Consensus 5 ~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~----i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 5 DICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRA----VLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEE----EESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCE----EECCCCCHHHHHhcCcccCCEEEEECC
Confidence 3456899999999999999999999999999999999998887654320 122223333333 2345999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
++.....++..+.. +.++..||-..+. + ...+.+.+.|+..+-.|
T Consensus 81 ~~~~n~~~~~~a~~-~~~~~~iiar~~~-~----~~~~~l~~~G~d~vi~p 125 (140)
T 3fwz_A 81 NGYEAGEIVASARA-KNPDIEIIARAHY-D----DEVAYITERGANQVVMG 125 (140)
T ss_dssp CHHHHHHHHHHHHH-HCSSSEEEEEESS-H----HHHHHHHHTTCSEEEEH
T ss_pred ChHHHHHHHHHHHH-HCCCCeEEEEECC-H----HHHHHHHHCCCCEEECc
Confidence 86544434443333 3333334433322 1 23345566787765443
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=7.6e-08 Score=96.40 Aligned_cols=99 Identities=15% Similarity=0.036 Sum_probs=71.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChHHHHHHHHhhc--c-cCCCCeee-eCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAH--R-EGQLPLTG-HYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~~--~-~g~~~i~~-~~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+|.||.++|..|+++| ++|.+|||++++++.+..... . .-..++.. ..++ +.++ .+|+||+++
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~---~aDvViiav 77 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALA---DADVVISTL 77 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGT---TCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhC---CCCEEEEec
Confidence 68999999999999999999999 899999999988877653211 0 00001333 4565 4344 499999999
Q ss_pred CCCch-------------------HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KAGSP-------------------VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~~-------------------v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
|.+.. +++++..+.++. ++.+|+..+|..
T Consensus 78 ~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~ 125 (309)
T 1hyh_A 78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPV 125 (309)
T ss_dssp SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSH
T ss_pred CCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcH
Confidence 98653 467777777765 566777777743
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.67 E-value=8.8e-08 Score=95.21 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=80.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++|+|||+|.||..+|+.|...|.+|.+|||++++.+.+.+.+ +.. ..++++++.. +|+|++++|.+.
T Consensus 156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~l~~~l~~---aDvVi~~~p~~~ 225 (293)
T 3d4o_A 156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMG-------MEPFHISKAAQELRD---VDVCINTIPALV 225 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT-------SEEEEGGGHHHHTTT---CSEEEECCSSCC
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCC-------CeecChhhHHHHhcC---CCEEEECCChHH
Confidence 5799999999999999999999999999999998766655432 222 2456666555 999999999853
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (505)
.-+ .....++++.++||++....... . +.....|+.++.+|-.
T Consensus 226 i~~----~~l~~mk~~~~lin~ar~~~~~~--~-~~a~~~Gv~~~~~~~l 268 (293)
T 3d4o_A 226 VTA----NVLAEMPSHTFVIDLASKPGGTD--F-RYAEKRGIKALLVPGL 268 (293)
T ss_dssp BCH----HHHHHSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECCCH
T ss_pred hCH----HHHHhcCCCCEEEEecCCCCCCC--H-HHHHHCCCEEEECCCC
Confidence 222 33456789999999997543321 2 4445568888776633
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-07 Score=86.49 Aligned_cols=115 Identities=7% Similarity=0.009 Sum_probs=76.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcEEEEeCChHHHHHHHHhhcccCCCCeee-e-CCHHHHHhh--cCCCcEEEEEcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTG-H-YTPRDFVLS--IQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~-~s~~e~v~~--l~~advIil~vp 81 (505)
++|.|+|+|.||..+|..|.+. |++|.++|+++++++.+.+.+.. +.. . .+.+.+.+. +..+|+||+++|
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~-----~~~gd~~~~~~l~~~~~~~~ad~vi~~~~ 114 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRN-----VISGDATDPDFWERILDTGHVKLVLLAMP 114 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCC-----EEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCC-----EEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence 5899999999999999999999 99999999999998887765421 111 1 233333332 567999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
+......++..+.. +.+...|+..++ .+. ..+.+.+.|+.++-.|
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~ii~~~~-~~~----~~~~l~~~G~~~vi~p 159 (183)
T 3c85_A 115 HHQGNQTALEQLQR-RNYKGQIAAIAE-YPD----QLEGLLESGVDAAFNI 159 (183)
T ss_dssp SHHHHHHHHHHHHH-TTCCSEEEEEES-SHH----HHHHHHHHTCSEEEEH
T ss_pred ChHHHHHHHHHHHH-HCCCCEEEEEEC-CHH----HHHHHHHcCCCEEEch
Confidence 86555555444433 444444443333 222 2234556688877655
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.8e-07 Score=94.26 Aligned_cols=114 Identities=12% Similarity=0.040 Sum_probs=85.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|++||||||+|.||..++..|.+. +++|. ++|+++++.+.+.+.. ++. +.+++++++. ..+|+|++++|+
T Consensus 2 m~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~------~~~-~~~~~~~l~~-~~~D~V~i~tp~ 73 (331)
T 4hkt_A 2 MTVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAY------GCE-VRTIDAIEAA-ADIDAVVICTPT 73 (331)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT------TCE-ECCHHHHHHC-TTCCEEEECSCG
T ss_pred CceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHh------CCC-cCCHHHHhcC-CCCCEEEEeCCc
Confidence 457999999999999999999986 77766 7999999988887653 356 8999999873 238999999999
Q ss_pred CchHHHHHHHHHhcCCCCc-EEEecC-CCCchhHHHHHHHHHHCCCeEEe
Q 010637 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
....+.+...+ ..|. ++++.- +..+.+.+++.+..+++|+.+.-
T Consensus 74 ~~h~~~~~~al----~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v 119 (331)
T 4hkt_A 74 DTHADLIERFA----RAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMV 119 (331)
T ss_dssp GGHHHHHHHHH----HTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hhHHHHHHHHH----HcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 76555443333 2343 555533 55667778888888888876653
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-07 Score=78.56 Aligned_cols=106 Identities=11% Similarity=0.010 Sum_probs=73.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEcC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp 81 (505)
++++|.|+|+|.||..++..|.+.| ++|.+++|++++.+.+...+.. ... ..+.+++.+.++.+|+||.++|
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~-----~~~~d~~~~~~~~~~~~~~d~vi~~~~ 78 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVA-----TKQVDAKDEAGLAKALGGFDAVISAAP 78 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCE-----EEECCTTCHHHHHHHTTTCSEEEECSC
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCc-----EEEecCCCHHHHHHHHcCCCEEEECCC
Confidence 4568999999999999999999999 9999999999998877633211 111 2344455555566999999997
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~ 120 (505)
.. ....+++... ..|..++|.++... .++.+.+.
T Consensus 79 ~~-~~~~~~~~~~---~~g~~~~~~~~~~~-~~~~~~~~ 112 (118)
T 3ic5_A 79 FF-LTPIIAKAAK---AAGAHYFDLTEDVA-ATNAVRAL 112 (118)
T ss_dssp GG-GHHHHHHHHH---HTTCEEECCCSCHH-HHHHHHHH
T ss_pred ch-hhHHHHHHHH---HhCCCEEEecCcHH-HHHHHHHH
Confidence 64 3444444433 35778888876543 45444443
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.9e-07 Score=94.61 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=85.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+++||||||+|.||..++.+|.+. +++|. ++|+++++.+.+.+.. ++..+.+++++++. ..+|+|++++|+
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~~~~l~~-~~~D~V~i~tp~ 75 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEAN------GAEAVASPDEVFAR-DDIDGIVIGSPT 75 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTT------TCEEESSHHHHTTC-SCCCEEEECSCG
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc------CCceeCCHHHHhcC-CCCCEEEEeCCc
Confidence 356899999999999999999986 67766 8999999988887653 35678999999873 238999999999
Q ss_pred CchHHHHHHHHHhcCCCC-cEEEecC-CCCchhHHHHHHHHHHCCCeEEe
Q 010637 83 GSPVDQTIAALSEHMSPG-DCIIDGG-NEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g-~iIId~s-t~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
....+.+...+ . .| .++++.- +..+.+.+++.+..++.|+.+.-
T Consensus 76 ~~h~~~~~~al-~---~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v 121 (344)
T 3euw_A 76 STHVDLITRAV-E---RGIPALCEKPIDLDIEMVRACKEKIGDGASKVML 121 (344)
T ss_dssp GGHHHHHHHHH-H---TTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEE
T ss_pred hhhHHHHHHHH-H---cCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEe
Confidence 76555443333 2 33 4666643 45566777777777777765543
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.4e-07 Score=94.42 Aligned_cols=113 Identities=14% Similarity=0.179 Sum_probs=83.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++||||||+|.||..++..|.+. +++|. ++|+++++.+.+.+.. ++..+++++++++. ..+|+|++|+|+
T Consensus 13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~i~tp~ 85 (354)
T 3q2i_A 13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT------GARGHASLTDMLAQ-TDADIVILTTPS 85 (354)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH------CCEEESCHHHHHHH-CCCSEEEECSCG
T ss_pred cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc------CCceeCCHHHHhcC-CCCCEEEECCCc
Confidence 46899999999999999999987 67755 8999999998887654 36788999999873 238999999999
Q ss_pred CchHHHHHHHHHhcCCCCc-EEEecC-CCCchhHHHHHHHHHHCCCeEE
Q 010637 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i 129 (505)
....+.+...+ ..|. ++++-- +....+.+++.+..++.|+.+.
T Consensus 86 ~~h~~~~~~al----~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~ 130 (354)
T 3q2i_A 86 GLHPTQSIECS----EAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLF 130 (354)
T ss_dssp GGHHHHHHHHH----HTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHH----HCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 76544443332 3444 444432 4455677777777777777654
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-08 Score=101.76 Aligned_cols=119 Identities=10% Similarity=0.104 Sum_probs=88.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|||+|.||..++..|.. ...+|.+|||++++.+++.+......+..+..+.+++++++. +|+|++|+|++
T Consensus 129 ~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~---aDiVi~aTps~ 205 (350)
T 1x7d_A 129 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKG---VDIITTVTADK 205 (350)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTT---CSEEEECCCCS
T ss_pred CCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhc---CCEEEEeccCC
Confidence 3579999999999999998864 356899999999999998876321100125667899998887 99999999986
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
. ...++. .+.+++|..|++.++..|. .+++...+..++..|+|.
T Consensus 206 ~-~~pvl~--~~~l~~G~~V~~vgs~~p~-~~El~~~~~~~a~v~vD~ 249 (350)
T 1x7d_A 206 A-YATIIT--PDMLEPGMHLNAVGGDCPG-KTELHADVLRNARVFVEY 249 (350)
T ss_dssp S-EEEEEC--GGGCCTTCEEEECSCCBTT-BEEECHHHHHTSEEEESS
T ss_pred C-CCceec--HHHcCCCCEEEECCCCCCC-ceeeCHHHHhcCcEEECC
Confidence 2 122222 2467899999999998776 445555566667789986
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.6e-07 Score=92.26 Aligned_cols=100 Identities=14% Similarity=0.183 Sum_probs=70.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHh---hc-cc-CCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDR---AH-RE-GQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~---~~-~~-g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
+.+||+|||+|.||.++|..|+.+|+ +|.+||+++++++..... .. .. ...+++.++++ +.++. +|+||+
T Consensus 13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~---aD~VI~ 88 (328)
T 2hjr_A 13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQN---SDVVII 88 (328)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT---CSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCC---CCEEEE
Confidence 34689999999999999999999999 999999999877642211 00 00 00146766777 44444 999999
Q ss_pred EcCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 79 LVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+++.+. .+++++..+.++. ++.++|..||.
T Consensus 89 avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP 133 (328)
T 2hjr_A 89 TAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNP 133 (328)
T ss_dssp CCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred cCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 983321 2455667777765 67777777773
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.7e-07 Score=93.16 Aligned_cols=119 Identities=12% Similarity=0.125 Sum_probs=86.0
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEE
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIi 77 (505)
|+|. ++||||||+|.||..++..|.+. +++|. ++|+++++.+.+.+... + ..+++++++++. ..+|+|+
T Consensus 1 M~m~-~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~ 72 (330)
T 3e9m_A 1 MSLD-KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELA------IPVAYGSYEELCKD-ETIDIIY 72 (330)
T ss_dssp --CC-CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTT------CCCCBSSHHHHHHC-TTCSEEE
T ss_pred CCCC-eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcC------CCceeCCHHHHhcC-CCCCEEE
Confidence 5443 46899999999999999999985 67766 78999999888877642 3 467899999873 2389999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCC-cEEEecC-CCCchhHHHHHHHHHHCCCeEEeC
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPG-DCIIDGG-NEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g-~iIId~s-t~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
+++|+....+.+...+ ..| .++++.- +....+.+++.+..+++|+.+...
T Consensus 73 i~tp~~~h~~~~~~al----~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~ 124 (330)
T 3e9m_A 73 IPTYNQGHYSAAKLAL----SQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEA 124 (330)
T ss_dssp ECCCGGGHHHHHHHHH----HTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred EcCCCHHHHHHHHHHH----HCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 9999986555443333 234 4666644 456677777888888888766443
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.3e-07 Score=93.31 Aligned_cols=114 Identities=16% Similarity=0.161 Sum_probs=84.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+++||||||+|.||..++.+|.+. +++|. ++|+++++.+.+.+.. ++..+++++++++. ..+|+|++++|+
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~------g~~~~~~~~~~l~~-~~~D~V~i~tp~ 76 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRY------NCAGDATMEALLAR-EDVEMVIITVPN 76 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHH------TCCCCSSHHHHHHC-SSCCEEEECSCT
T ss_pred CcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc------CCCCcCCHHHHhcC-CCCCEEEEeCCh
Confidence 346899999999999999999987 78855 8899999998887654 24558899999853 238999999999
Q ss_pred CchHHHHHHHHHhcCCCCc-EEEecC-CCCchhHHHHHHHHHHCCCeEE
Q 010637 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i 129 (505)
....+.+...+ ..|. ++++.- +..+.+.+++.+..+++|+.+.
T Consensus 77 ~~h~~~~~~al----~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~ 121 (354)
T 3db2_A 77 DKHAEVIEQCA----RSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFL 121 (354)
T ss_dssp TSHHHHHHHHH----HTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHH----HcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 86655444333 2344 555543 4556777778787777777554
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.8e-07 Score=92.47 Aligned_cols=114 Identities=14% Similarity=0.200 Sum_probs=83.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++||||||+|.||..++..|.+. +++|. ++|+++++.+++.+.... ...+++++++++. ..+|+|++|+|+.
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~-~~~D~V~i~tp~~ 75 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGV-----EKAYKDPHELIED-PNVDAVLVCSSTN 75 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTC-----SEEESSHHHHHHC-TTCCEEEECSCGG
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCC-----CceeCCHHHHhcC-CCCCEEEEcCCCc
Confidence 46999999999999999999885 66765 789999998888775421 2478999999883 2389999999997
Q ss_pred chHHHHHHHHHhcCCCCc-EEEecC-CCCchhHHHHHHHHHHCCCeEE
Q 010637 84 SPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i 129 (505)
...+.+...+ ..|. ++++.- +..+.+.+++.+..++.|+.+.
T Consensus 76 ~h~~~~~~al----~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~ 119 (344)
T 3ezy_A 76 THSELVIACA----KAKKHVFCEKPLSLNLADVDRMIEETKKADVILF 119 (344)
T ss_dssp GHHHHHHHHH----HTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEE
T ss_pred chHHHHHHHH----hcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 6544443332 3344 666643 5566777788887777776554
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-07 Score=93.84 Aligned_cols=117 Identities=16% Similarity=0.181 Sum_probs=82.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|.|||+|.||.+++..|++.|. +|+++||++++.+++.+...... . .. .+.+++.+.++.+|+||.++|.+.
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~--~-~~-~~~~~~~~~~~~aDivIn~t~~~~ 216 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERR--S-AY-FSLAEAETRLAEYDIIINTTSVGM 216 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSS--C-CE-ECHHHHHHTGGGCSEEEECSCTTC
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhcc--C-ce-eeHHHHHhhhccCCEEEECCCCCC
Confidence 3579999999999999999999998 99999999999988876532100 0 11 123333333344999999999874
Q ss_pred hH--HHH-HHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 85 PV--DQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v--~~v-l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.- +.+ +. ...+.++.+++|++.. |..| ++.+..+++|..+++
T Consensus 217 ~~~~~~~~i~--~~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~~v~ 261 (297)
T 2egg_A 217 HPRVEVQPLS--LERLRPGVIVSDIIYN-PLET-KWLKEAKARGARVQN 261 (297)
T ss_dssp SSCCSCCSSC--CTTCCTTCEEEECCCS-SSSC-HHHHHHHHTTCEEEC
T ss_pred CCCCCCCCCC--HHHcCCCCEEEEcCCC-CCCC-HHHHHHHHCcCEEEC
Confidence 21 101 11 1346789999999985 6666 366777888887764
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.2e-07 Score=90.65 Aligned_cols=111 Identities=12% Similarity=0.129 Sum_probs=82.2
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~-lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++||||||+|.||.. ++..|.+. +++|. ++|+++++.+++.+... +..+++++++++. +|+|++++|+
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~------~~~~~~~~~ll~~---~D~V~i~tp~ 76 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYR------IMPFDSIESLAKK---CDCIFLHSST 76 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHT------CCBCSCHHHHHTT---CSEEEECCCG
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC------CCCcCCHHHHHhc---CCEEEEeCCc
Confidence 468999999999996 88888874 67776 89999999998877642 3448899999885 9999999999
Q ss_pred CchHHHHHHHHHhcCCCCc-EEEe-cCCCCchhHHHHHHHHHHCCCeEE
Q 010637 83 GSPVDQTIAALSEHMSPGD-CIID-GGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId-~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
....+.+.. .+ ..|. ++++ -.+..+.+.+++.+..+++|+.+.
T Consensus 77 ~~h~~~~~~-al---~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~ 121 (308)
T 3uuw_A 77 ETHYEIIKI-LL---NLGVHVYVDKPLASTVSQGEELIELSTKKNLNLM 121 (308)
T ss_dssp GGHHHHHHH-HH---HTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEE
T ss_pred HhHHHHHHH-HH---HCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 765444433 32 2343 5555 345566777778887777776554
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=3.9e-07 Score=91.64 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=68.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhh---ccc-CCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRA---HRE-GQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~---~~~-g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+|.||.++|..|+.+|+ +|.++|+++++++.+.... ... ...++.. ++. +.++ .+|+||+++
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~d~-~~~~---~aDvViiav 75 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA-GDY-ADLK---GSDVVIVAA 75 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE-CCG-GGGT---TCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe-CCH-HHhC---CCCEEEEcc
Confidence 589999999999999999999999 9999999998877654321 000 0002333 343 3333 499999999
Q ss_pred CCCc---------------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
|.+. .+++++..+.++. ++.+||..||..
T Consensus 76 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~ 119 (319)
T 1a5z_A 76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPV 119 (319)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcH
Confidence 8754 1456667777764 666777777754
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.5e-07 Score=93.56 Aligned_cols=120 Identities=14% Similarity=0.160 Sum_probs=97.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+||+.+... ..+.+ + ...+++++++. +|+|++.+|-....
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~--~~~~~-------~-~~~~l~ell~~---sDivslh~Plt~~T 208 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRED--LKEKG-------C-VYTSLDELLKE---SDVISLHVPYTKET 208 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHHTT-------C-EECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred cEEEEECcchHHHHHHHhhcccCceeeecCCccchh--hhhcC-------c-eecCHHHHHhh---CCEEEEcCCCChhh
Confidence 479999999999999999999999999999876532 22221 2 35689999988 99999999988877
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEG 139 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~ 139 (505)
+.++ .+.+..+++|.++|+++-+..-+...+.+.|.+..+.-...-|.-.|+.
T Consensus 209 ~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl 262 (334)
T 3kb6_A 209 HHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEI 262 (334)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHH
T ss_pred ccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCC
Confidence 7777 5667789999999999999999999999999886555555556666653
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=8.2e-07 Score=89.79 Aligned_cols=101 Identities=11% Similarity=0.164 Sum_probs=72.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHh---h-cccC-CCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDR---A-HREG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~---~-~~~g-~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.|||+|||+|.||.++|..|+.+|+ +|.+||+++++++..... . ...+ ..+++.++++++.++. +|+||++
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~---aDiVi~a 85 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG---ADCVIVT 85 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCC---CCEEEEc
Confidence 3689999999999999999999998 999999999877652211 0 0000 0156777888866665 9999999
Q ss_pred c--CCCc------------------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 80 V--KAGS------------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 v--p~~~------------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+ |... .++++...+.++. ++.++|..||..
T Consensus 86 ~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~ 135 (331)
T 1pzg_A 86 AGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPL 135 (331)
T ss_dssp CSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred cCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCch
Confidence 8 5311 1556667777765 677887776643
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=5.7e-07 Score=78.35 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=64.4
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee-eCCHHHHHh-hcCCCcEEEE
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVL-SIQRPRSVII 78 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~v~-~l~~advIil 78 (505)
|..-++++|.|+|+|.+|..++..|.+.|++|.++|+++++.+.+.+.+.. -+.. ..+.+.+.+ .+..+|+||.
T Consensus 1 m~~~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~----~~~~d~~~~~~l~~~~~~~~d~vi~ 76 (144)
T 2hmt_A 1 MGRIKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATH----AVIANATEENELLSLGIRNFEYVIV 76 (144)
T ss_dssp -----CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSE----EEECCTTCHHHHHTTTGGGCSEEEE
T ss_pred CCCCcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCE----EEEeCCCCHHHHHhcCCCCCCEEEE
Confidence 433234579999999999999999999999999999999887665443211 0111 123333322 1345999999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+++.+......+......+.+..+|+..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 106 (144)
T 2hmt_A 77 AIGANIQASTLTTLLLKELDIPNIWVKAQN 106 (144)
T ss_dssp CCCSCHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred CCCCchHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 998752333333334444555555555444
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.49 E-value=6.7e-07 Score=89.63 Aligned_cols=116 Identities=19% Similarity=0.199 Sum_probs=80.5
Q ss_pred CCcCCCCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010637 1 MEASALSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~-lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
|+|. +++|||||+|.||.. ++..|.+. +++|. ++|+++++.+.+.+.. ++..+++++++.. .+|+|+
T Consensus 1 m~m~-~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~------g~~~~~~~~~l~~---~~D~V~ 70 (319)
T 1tlt_A 1 MSLK-KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW------RIPYADSLSSLAA---SCDAVF 70 (319)
T ss_dssp -----CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH------TCCBCSSHHHHHT---TCSEEE
T ss_pred CCCC-cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc------CCCccCcHHHhhc---CCCEEE
Confidence 5553 368999999999996 88888764 67766 8999999988877653 2345678887733 489999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEEe
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+++|+....+.+.. . +..|. ++++. .+....+.+++.+..++.|+.+..
T Consensus 71 i~tp~~~h~~~~~~-a---l~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~ 121 (319)
T 1tlt_A 71 VHSSTASHFDVVST-L---LNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMV 121 (319)
T ss_dssp ECSCTTHHHHHHHH-H---HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred EeCCchhHHHHHHH-H---HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 99999755443333 2 33455 66663 445567777888887888776543
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-07 Score=93.63 Aligned_cols=115 Identities=10% Similarity=0.056 Sum_probs=85.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|+|||+|.||..++..|++ ...+|.+|||++++.+++.+.....+ ..+. +.++++++ . +|+|++|+|..
T Consensus 125 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~-~~~~-~~~~~e~v-~---aDvVi~aTp~~ 198 (322)
T 1omo_A 125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG-ISAS-VQPAEEAS-R---CDVLVTTTPSR 198 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT-CCEE-ECCHHHHT-S---SSEEEECCCCS
T ss_pred CCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcC-ceEE-ECCHHHHh-C---CCEEEEeeCCC
Confidence 3579999999999999999987 35689999999999999887543210 1356 78898888 6 99999999986
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
.+ ++. .+.+++|..|++.++..|. ..++...+..++..|+|.+
T Consensus 199 ~p---v~~--~~~l~~G~~V~~ig~~~p~-~~el~~~~~~~a~v~vD~~ 241 (322)
T 1omo_A 199 KP---VVK--AEWVEEGTHINAIGADGPG-KQELDVEILKKAKIVVDDL 241 (322)
T ss_dssp SC---CBC--GGGCCTTCEEEECSCCSTT-CCCBCHHHHHTEEEEESCH
T ss_pred Cc---eec--HHHcCCCeEEEECCCCCCC-ccccCHHHHhcCeEEECCH
Confidence 42 222 2467899999999887765 3344444445556788853
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-06 Score=89.14 Aligned_cols=114 Identities=12% Similarity=0.136 Sum_probs=83.1
Q ss_pred CCcEEEEcccHHHHHHHHHHH-h-CCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVA-E-KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La-~-~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++||||||+|.||..++..|. + .+++|. ++|+++++.+++.+.... ....+++++++++. ..+|+|++++|+
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~----~~~~~~~~~~ll~~-~~~D~V~i~tp~ 76 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQL----NATVYPNDDSLLAD-ENVDAVLVTSWG 76 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTC----CCEEESSHHHHHHC-TTCCEEEECSCG
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCC----CCeeeCCHHHHhcC-CCCCEEEECCCc
Confidence 468999999999999999999 5 467765 889999999888775421 14678999999874 347999999999
Q ss_pred CchHHHHHHHHHhcCCCCc-EEEecC-CCCchhHHHHHHHHHHCCCeE
Q 010637 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~ 128 (505)
....+.+... +..|. ++++-- +....+.+++.+..+++|..+
T Consensus 77 ~~h~~~~~~a----l~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~ 120 (344)
T 3mz0_A 77 PAHESSVLKA----IKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRL 120 (344)
T ss_dssp GGHHHHHHHH----HHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHH----HHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence 7655544333 33444 555543 445667777777777777654
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.7e-07 Score=90.05 Aligned_cols=133 Identities=14% Similarity=0.147 Sum_probs=90.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+++|||||+|.||..++..|.+. ++++ .++|+++++.+.+.+. +..+.+++++++. ..+|+|++++|+.
T Consensus 10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~--------~~~~~~~~~~l~~-~~~D~V~i~tp~~ 80 (315)
T 3c1a_A 10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG--------CVIESDWRSVVSA-PEVEAVIIATPPA 80 (315)
T ss_dssp CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT--------CEEESSTHHHHTC-TTCCEEEEESCGG
T ss_pred cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh--------CcccCCHHHHhhC-CCCCEEEEeCChH
Confidence 46899999999999999999986 5664 5899999876654432 3467889998852 2389999999997
Q ss_pred chHHHHHHHHHhcCCCCc-EEEe-cCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHH
Q 010637 84 SPVDQTIAALSEHMSPGD-CIID-GGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iIId-~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~l 161 (505)
...+ ++... +..|+ ++++ -.+....+.+++.+..+++|+.+....... . + ..+..++++
T Consensus 81 ~h~~-~~~~a---l~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r------~--------~-p~~~~~~~~ 141 (315)
T 3c1a_A 81 THAE-ITLAA---IASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQL------F--------N-PAWEALKAD 141 (315)
T ss_dssp GHHH-HHHHH---HHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECGGG------G--------C-HHHHHHHHT
T ss_pred HHHH-HHHHH---HHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeechh------c--------C-HHHHHHHHH
Confidence 5444 33333 33454 5666 344556677778777777777665432211 1 1 235667777
Q ss_pred HHHHh
Q 010637 162 LQKVA 166 (505)
Q Consensus 162 l~~ig 166 (505)
++.+|
T Consensus 142 i~~lG 146 (315)
T 3c1a_A 142 LTSIG 146 (315)
T ss_dssp HHHHC
T ss_pred HHHcC
Confidence 77776
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=87.97 Aligned_cols=114 Identities=12% Similarity=0.175 Sum_probs=80.9
Q ss_pred CCcEEEEcccHHHHHHHHHHH-h-CCCcE-EEEeCChHHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVA-E-KGFPI-SVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La-~-~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~vp 81 (505)
+++|||||+|.||..++..|. + .|++| .++|+++++.+.+.+.. ++ ..+++++++++. ..+|+|++++|
T Consensus 8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~------g~~~~~~~~~~~l~~-~~~D~V~i~tp 80 (346)
T 3cea_A 8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL------GVETTYTNYKDMIDT-ENIDAIFIVAP 80 (346)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT------CCSEEESCHHHHHTT-SCCSEEEECSC
T ss_pred cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh------CCCcccCCHHHHhcC-CCCCEEEEeCC
Confidence 468999999999999999998 5 36774 58999999988877653 23 567899998863 23899999999
Q ss_pred CCchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHC-CCeEEe
Q 010637 82 AGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQK-GLLYLG 130 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~-gi~~i~ 130 (505)
+....+.+... +..|. ++++. .+....+.+++.+..++. |+.+..
T Consensus 81 ~~~h~~~~~~a----l~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~ 128 (346)
T 3cea_A 81 TPFHPEMTIYA----MNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQS 128 (346)
T ss_dssp GGGHHHHHHHH----HHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEEC
T ss_pred hHhHHHHHHHH----HHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEE
Confidence 97554444333 33455 55552 334556666677777777 766543
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-06 Score=87.73 Aligned_cols=97 Identities=19% Similarity=0.138 Sum_probs=67.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChHHHHHHHHhhcc-----cCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHR-----EGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~-----~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|||+|||+|.||.++|..|+.+ |++|.+||+++++++........ ....++..++++++ ++. +|+||++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~---aDvViia 76 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TAN---SDIVIIT 76 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCC---CCEEEEe
Confidence 5899999999999999999985 79999999999887754321000 00013555677766 444 9999999
Q ss_pred cCCCc---------------hHHHHHHHHHhcCCCCcEEEecCC
Q 010637 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+|.+. .++++.+.+.++. ++.+|+..||
T Consensus 77 v~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~tN 119 (310)
T 1guz_A 77 AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSN 119 (310)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcC
Confidence 97531 2245556666664 5666666766
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.1e-07 Score=97.84 Aligned_cols=116 Identities=7% Similarity=0.161 Sum_probs=87.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH---HHhcCCCceecccHHHHHHHHhcCCCCCCCcc
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELA---RIWKGGCIIRAVFLDRIKKAYQRNPNLASLVV 402 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~---~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~ 402 (505)
+.++++|++||++.++.|+.++|++.|++++ .++|.+++. ..|+.| .++|++++....++.+++......+
T Consensus 184 G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~-----lGl~~~~~~~~~~~w~~g-~~~S~l~~~~~~~l~~~d~~~~~~v 257 (497)
T 2p4q_A 184 GAGHYVKMVHNGIEYGDMQLICEAYDIMKRL-----GGFTDKEISDVFAKWNNG-VLDSFLVEITRDILKFDDVDGKPLV 257 (497)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCCHHHHHHHHHHHHTT-TTCBHHHHHHHHHHTCBCTTSSBGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHhcCC-ccccHHHHHHHHHHhcCCCCCccHH
Confidence 5789999999999999999999999999863 126776655 458888 5799999988777665332122344
Q ss_pred cHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCh
Q 010637 403 DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARL 449 (505)
Q Consensus 403 ~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~ 449 (505)
+...+...+|+++ +|++..|.+.|+|+|.+.++++ +.+.++.+|.
T Consensus 258 d~i~D~~~~KgtG--~~~~~~A~~~Gv~~P~~~~av~ar~~s~~k~~r~ 304 (497)
T 2p4q_A 258 EKIMDTAGQKGTG--KWTAINALDLGMPVTLIGEAVFARCLSALKNERI 304 (497)
T ss_dssp GGSCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhhccchHH--HHHHHHHHHcCCCCchHHHHHHHHHhhcchhhHH
Confidence 4333334457777 8999999999999999999987 5666665554
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=6.2e-07 Score=80.15 Aligned_cols=111 Identities=12% Similarity=0.083 Sum_probs=68.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHH-HhhcccCCCCeee-eCCHHHHHh-hcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL-DRAHREGQLPLTG-HYTPRDFVL-SIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~-~~~~~~g~~~i~~-~~s~~e~v~-~l~~advIil~vp~ 82 (505)
.++|.|+|+|.+|..++..|.+.|++|.++|+++++.+.+. ..+.. -+.. ..+.+.+.+ .++.+|+||+++++
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~----~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~ 94 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGF----TVVGDAAEFETLKECGMEKADMVFAFTND 94 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSE----EEESCTTSHHHHHTTTGGGCSEEEECSSC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCc----EEEecCCCHHHHHHcCcccCCEEEEEeCC
Confidence 36899999999999999999999999999999998876654 22211 0111 112333322 14459999999998
Q ss_pred CchHHHHHHHHHhcCCCC-cEEEecCCCCchhHHHHHHHHHHCCCe
Q 010637 83 GSPVDQTIAALSEHMSPG-DCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g-~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
.. ....+..+...+.+. .+|...++. ... +.+.+.|+.
T Consensus 95 ~~-~~~~~~~~~~~~~~~~~iv~~~~~~--~~~----~~l~~~G~~ 133 (155)
T 2g1u_A 95 DS-TNFFISMNARYMFNVENVIARVYDP--EKI----KIFEENGIK 133 (155)
T ss_dssp HH-HHHHHHHHHHHTSCCSEEEEECSSG--GGH----HHHHTTTCE
T ss_pred cH-HHHHHHHHHHHHCCCCeEEEEECCH--HHH----HHHHHCCCc
Confidence 64 333444444443333 444444332 222 234456766
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-06 Score=88.06 Aligned_cols=112 Identities=15% Similarity=0.114 Sum_probs=83.6
Q ss_pred CcEEEEcccHHHH-HHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQ-NLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~-~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+||||||+|.||. .++..|.+. +++|. ++|+++++.+++.+.. ++..+.+++++++. ...|+|++|+|+.
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~~~ll~~-~~~D~V~i~tp~~ 100 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERF------GGEPVEGYPALLER-DDVDAVYVPLPAV 100 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHH------CSEEEESHHHHHTC-TTCSEEEECCCGG
T ss_pred eEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHc------CCCCcCCHHHHhcC-CCCCEEEECCCcH
Confidence 5899999999998 799999887 67765 8899999998887754 35567899999863 3479999999997
Q ss_pred chHHHHHHHHHhcCCCCc-EEEecC-CCCchhHHHHHHHHHHCCCeEE
Q 010637 84 SPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i 129 (505)
...+.+...+ ..|+ ++++-- +....+.+++.+..+++|+.+.
T Consensus 101 ~h~~~~~~al----~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 144 (350)
T 3rc1_A 101 LHAEWIDRAL----RAGKHVLAEKPLTTDRPQAERLFAVARERGLLLM 144 (350)
T ss_dssp GHHHHHHHHH----HTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHH----HCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 6655444333 2443 556533 4556777788888888877654
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-06 Score=87.16 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=69.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-----cCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-----EGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-----~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
++||+|||+|.||.++|..|+.+|+ +|.++|+++++++........ ....+++.+.+. +.++. +|+||++
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~---aD~Vi~a 79 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAG---ADVVIVT 79 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC---CCEEEEe
Confidence 4689999999999999999999998 999999999877643221100 000146666776 44444 9999999
Q ss_pred c--CCC------------------chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 80 V--KAG------------------SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 v--p~~------------------~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+ |.. ..++++...+.+.. ++.++|..||.
T Consensus 80 ~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP 128 (322)
T 1t2d_A 80 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNP 128 (322)
T ss_dssp CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSS
T ss_pred CCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 8 421 13555666777765 67777777774
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.1e-06 Score=86.01 Aligned_cols=101 Identities=15% Similarity=0.239 Sum_probs=68.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHH--HH-Hhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDE--TL-DRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~--l~-~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
++|||+|||+|.||..+|..|+.+|+ +|+++||++++++. +. ..+.. .+..++....+.+ .+. .+|+||+
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~---~aD~Vii 81 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE-ICR---DADMVVI 81 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG-GGT---TCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHH-HhC---CCCEEEE
Confidence 45799999999999999999999999 99999999877652 21 12110 0000233333443 233 4999999
Q ss_pred EcCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 79 LVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 79 ~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+++... .+++++..+.+. .++.+|+..+|..
T Consensus 82 ~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~ 127 (319)
T 1lld_A 82 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPV 127 (319)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCch
Confidence 995442 233566777775 6788898888864
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-06 Score=86.17 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=66.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-----cCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-----EGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-----~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
++||+|||+|.||.++|..|+..|+ +|.++|+++++++........ ....+++.+.+.+ .++. +|+||++
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~-a~~~---aD~Vi~a 77 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-DTAN---SDVIVVT 77 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCHH-HHCC---CCEEEEc
Confidence 4699999999999999999999997 999999998876543221100 0001456656763 3444 9999999
Q ss_pred cCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+. .++++.+.+.++. ++.+|+..||-
T Consensus 78 ~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP 121 (309)
T 1ur5_A 78 SGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNP 121 (309)
T ss_dssp CCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCc
Confidence 84431 2234445565554 67777777763
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-06 Score=86.17 Aligned_cols=98 Identities=11% Similarity=0.224 Sum_probs=65.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhccc----CCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE----GQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~----g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+|.||.++|..|+.+|+ +|.++|+++++++......... ...+++. ++.+ .++.+|+||+++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~~~~----a~~~aDvVIi~~ 75 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH-GGHS----ELADAQVVILTA 75 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE-ECGG----GGTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE-CCHH----HhCCCCEEEEcC
Confidence 589999999999999999999999 9999999998766433221110 0002332 3432 234499999999
Q ss_pred CCCc---------------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.+. .+++++..+.++ .++.+|+..||..
T Consensus 76 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~ 119 (304)
T 2v6b_A 76 GANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPV 119 (304)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSH
T ss_pred CCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 5542 235666777776 4777887777754
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=8.7e-08 Score=94.40 Aligned_cols=111 Identities=17% Similarity=0.076 Sum_probs=76.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|||+|.||++++..|++.|. +|+++||++++.+++.... ......++.+++. .+|+||.++|.+..
T Consensus 118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~------~~~~~~~~~~~~~---~aDiVInaTp~Gm~ 188 (277)
T 3don_A 118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNI------NKINLSHAESHLD---EFDIIINTTPAGMN 188 (277)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCC------EEECHHHHHHTGG---GCSEEEECCC----
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhc------ccccHhhHHHHhc---CCCEEEECccCCCC
Confidence 579999999999999999999999 8999999999876655321 1122233334334 49999999998632
Q ss_pred --HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 86 --VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 --v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
++..+ -...+.++.+|+|+... |..| ++.+..+++|+..++
T Consensus 189 ~~~~~~l--~~~~l~~~~~V~D~vY~-P~~T-~ll~~A~~~G~~~~~ 231 (277)
T 3don_A 189 GNTDSVI--SLNRLASHTLVSDIVYN-PYKT-PILIEAEQRGNPIYN 231 (277)
T ss_dssp ---CCSS--CCTTCCSSCEEEESCCS-SSSC-HHHHHHHHTTCCEEC
T ss_pred CCCcCCC--CHHHcCCCCEEEEecCC-CCCC-HHHHHHHHCcCEEeC
Confidence 11111 12347789999999887 4455 466777888876543
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-06 Score=87.89 Aligned_cols=113 Identities=13% Similarity=0.066 Sum_probs=77.4
Q ss_pred CCcEEEEcccHHHH-HHHHHHHhC-CCcEEEEeCChHHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQ-NLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~-~lA~~La~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~vp~ 82 (505)
++||||||+|.||. .++..|.+. +++|.++|+++++.+++.+... +.. +.+..+++. ..+|+|++++|+
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g------~~~~~~~~~~~l~--~~~D~V~i~tp~ 73 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYR------VSATCTDYRDVLQ--YGVDAVMIHAAT 73 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTT------CCCCCSSTTGGGG--GCCSEEEECSCG
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcC------CCccccCHHHHhh--cCCCEEEEECCc
Confidence 46899999999998 599998875 6788899999999988876532 222 334444442 248999999998
Q ss_pred CchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEEe
Q 010637 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
....+.+... +..|+ ++++. .+....+.+++.+..++.|+.+..
T Consensus 74 ~~h~~~~~~a----l~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v 119 (323)
T 1xea_A 74 DVHSTLAAFF----LHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYV 119 (323)
T ss_dssp GGHHHHHHHH----HHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hhHHHHHHHH----HHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEE
Confidence 7544433333 23454 66663 344556777777777777776543
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.9e-07 Score=95.90 Aligned_cols=116 Identities=17% Similarity=0.315 Sum_probs=88.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH---HHhcCCCceecccHHHHHHHHhc-CCCCCCCc
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELA---RIWKGGCIIRAVFLDRIKKAYQR-NPNLASLV 401 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~---~iW~~Gciirs~lL~~i~~~~~~-~~~~~~ll 401 (505)
..++++|+++|+++++.++.++|++.+++++ .+++.+++. ..|+.| .+.|++++....++.+ +.......
T Consensus 180 g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~-----~Gl~~~~~~~l~~~w~~g-~~~s~l~~~~~~~l~~~d~~~g~~~ 253 (474)
T 2iz1_A 180 GAGHYVKMVHNGIEYGDMQLIAESYDLLKRI-----LGLSNAEIQAIFEEWNEG-ELDSYLIEITKEVLKRKDDEGEGYI 253 (474)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SCCCHHHHHHHHHHHTTT-TTCBHHHHHHHHHTTCBCSSSSSBG
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCC-CccccHHHhhhhHhhcCCCCCChhH
Confidence 5789999999999999999999999999863 126665554 558988 5789999988887653 33222245
Q ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCh
Q 010637 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARL 449 (505)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~ 449 (505)
++...+...+++++ +|++..|.+.|+|+|.+.++++ +.+.++.+|.
T Consensus 254 vd~i~D~~~~k~tG--~~~~~~A~~~gv~~P~~~~av~ar~~s~~k~~r~ 301 (474)
T 2iz1_A 254 VDKILDKAGNKGTG--KWTSESALDLGVPLPLITESVFARYISTYKDERV 301 (474)
T ss_dssp GGGBCSCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHhhcccchH--HHHHHHHHHcCCCCchHHHHHHHHHhhhhhhhhH
Confidence 55444445567778 9999999999999999999987 5666665554
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=8.3e-07 Score=94.25 Aligned_cols=107 Identities=15% Similarity=0.219 Sum_probs=81.0
Q ss_pred cchhhhhhHhhhHHHhHhhHHHHHHHHHHH------hCCCCHHHHHHHHHHhccC-CcchhHHhhhhhhccccccCCCch
Q 010637 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKH------VGGLSNAELAEIFDEWNKG-ELESFLVEITADIFKVKDEYGEGE 254 (505)
Q Consensus 182 G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~------~g~l~~~~i~~v~~~~~~g-~~~s~l~~~~~~il~~~~~~~~~~ 254 (505)
+.++++|+++|++.++.++..+|.+.++++ .. ++..++.++ |+.| ..+|++++...+.+.++.+...-.
T Consensus 325 ~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~-l~~~~ia~i---wr~GciIrs~~l~~i~~a~~~~~~l~~l~ 400 (480)
T 2zyd_A 325 DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWD-LNYGEIAKI---FRAGCIIRAQFLQKITDACAENPQIANLL 400 (480)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCHHHHHHH---TSSSSTTCBTHHHHHHHHHHHCTTCSCGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHH---HhcCcchHHHHHHHHHHHHhcCCChHhhh
Confidence 789999999999999999999999999998 45 888888777 8775 568999997777776532222111
Q ss_pred hHHHHHhhhCCCc-hHHHHHHHHHHcCCCcchHHHHHHH
Q 010637 255 LVDKILDKTGMKG-TGKWTVQQAAELSVAAPTIAASLDC 292 (505)
Q Consensus 255 ~l~~i~~~~~~kg-tg~~~~~~A~~~gvp~p~i~~av~~ 292 (505)
+-+.+.+.+...+ .+||++..|.+.|||+|.+++|+..
T Consensus 401 ~~~~f~~~~~~~~~~~r~~v~~a~~~gvp~p~~s~al~~ 439 (480)
T 2zyd_A 401 LAPYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAY 439 (480)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1112233333234 4899999999999999999999764
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.36 E-value=3e-06 Score=85.43 Aligned_cols=115 Identities=10% Similarity=0.133 Sum_probs=83.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC---c-EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF---P-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~---~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
++||||||+|.||..++..|.+.+. + |.++||++++.+++.+.... ...+++++++++. ...|+|++++|
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~-----~~~~~~~~~ll~~-~~vD~V~i~tp 75 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDI-----PKAYGSYEELAKD-PNVEVAYVGTQ 75 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTC-----SCEESSHHHHHHC-TTCCEEEECCC
T ss_pred ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCC-----CcccCCHHHHhcC-CCCCEEEECCC
Confidence 4699999999999999999987643 4 55889999999988876421 1468899999874 24899999999
Q ss_pred CCchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEEe
Q 010637 82 AGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+....+.+...+ ..|+ ++++- -+....+.+++.+..+++|+.+..
T Consensus 76 ~~~H~~~~~~al----~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v 122 (334)
T 3ohs_X 76 HPQHKAAVMLCL----AAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLME 122 (334)
T ss_dssp GGGHHHHHHHHH----HTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cHHHHHHHHHHH----hcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 976655443333 3444 55553 244566777787777777775543
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.4e-06 Score=87.17 Aligned_cols=116 Identities=13% Similarity=0.143 Sum_probs=81.1
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|.|. +.||||||+|.||..++.+|.+. +++|. ++|+++++.+...+. ++..+++++++++. ...|+|++
T Consensus 1 M~m~-~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~-------g~~~~~~~~~ll~~-~~~D~V~i 71 (359)
T 3e18_A 1 MSLK-KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQK-------GLKIYESYEAVLAD-EKVDAVLI 71 (359)
T ss_dssp --CC-CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTT-------TCCBCSCHHHHHHC-TTCCEEEE
T ss_pred CCCC-cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhc-------CCceeCCHHHHhcC-CCCCEEEE
Confidence 5443 35899999999999999999887 67765 789999987643221 35678999999873 23899999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEE
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (505)
|+|+....+.+...+ ..|+ ++++- -+....+.+++.+..+++|+.+.
T Consensus 72 ~tp~~~h~~~~~~al----~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 120 (359)
T 3e18_A 72 ATPNDSHKELAISAL----EAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFM 120 (359)
T ss_dssp CSCGGGHHHHHHHHH----HTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred cCCcHHHHHHHHHHH----HCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 999976555443333 3454 55553 23456677777777777776553
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.5e-06 Score=84.69 Aligned_cols=115 Identities=11% Similarity=0.116 Sum_probs=82.4
Q ss_pred CcEEEEcccHHHHHH-HHHHHhCCCcEE-EEeCChHHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQNL-ALNVAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~l-A~~La~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+||||||+|.||..+ +..|.+.|++|. ++|+++++.+++.+... + ..+++++++++. ..+|+|++++|+.
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g------~~~~~~~~~~~l~~-~~~D~V~i~tp~~ 73 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENG------IGKSVTSVEELVGD-PDVDAVYVSTTNE 73 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTT------CSCCBSCHHHHHTC-TTCCEEEECSCGG
T ss_pred CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEEeCChh
Confidence 489999999999998 888888788865 88999999888776532 2 357889998863 2389999999987
Q ss_pred chHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 84 SPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
...+.+ ... +..|+ ++++. .+....+.+++.+..+++|+.+....
T Consensus 74 ~h~~~~-~~a---l~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~ 120 (332)
T 2glx_A 74 LHREQT-LAA---IRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNH 120 (332)
T ss_dssp GHHHHH-HHH---HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECC
T ss_pred HhHHHH-HHH---HHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEee
Confidence 544433 333 33565 55653 34456677777777777787665543
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-06 Score=89.05 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=80.7
Q ss_pred CCcCCCCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010637 1 MEASALSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~-lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
|+|. ++||||||+|.||.. ++..|.+. +++|. ++|+++++.+.+.+... ....+++++++++. ...|+|+
T Consensus 1 M~M~-~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~-----~~~~~~~~~~ll~~-~~vD~V~ 73 (359)
T 3m2t_A 1 MSLS-LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFIS-----DIPVLDNVPAMLNQ-VPLDAVV 73 (359)
T ss_dssp --CC-CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSC-----SCCEESSHHHHHHH-SCCSEEE
T ss_pred CCCC-cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcC-----CCcccCCHHHHhcC-CCCCEEE
Confidence 5443 358999999999985 89999876 67765 88999999887766532 24678999999985 2359999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCc-EEEecC-CCCchhHHHHHHHHHHCCCeE
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~ 128 (505)
+++|+....+-+... +..|+ ++++-- +....+.+++.+..+++|+.+
T Consensus 74 i~tp~~~H~~~~~~a----l~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~ 122 (359)
T 3m2t_A 74 MAGPPQLHFEMGLLA----MSKGVNVFVEKPPCATLEELETLIDAARRSDVVS 122 (359)
T ss_dssp ECSCHHHHHHHHHHH----HHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCE
T ss_pred EcCCcHHHHHHHHHH----HHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence 999986554433333 33454 555432 345566777777777766644
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.2e-07 Score=87.73 Aligned_cols=105 Identities=13% Similarity=0.087 Sum_probs=74.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+|+|||+|.||++++..|++.|. +|+++||++++.+++.+.. +.....++.+.+.. +|+||.++|.+..-
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~------~~~~~~~~~~~~~~---aDiVInatp~gm~p 180 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPV------KIFSLDQLDEVVKK---AKSLFNTTSVGMKG 180 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSC------EEEEGGGHHHHHHT---CSEEEECSSTTTTS
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc------ccCCHHHHHhhhcC---CCEEEECCCCCCCC
Confidence 79999999999999999999998 8999999999887766532 12344566666666 99999999875210
Q ss_pred -HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCe
Q 010637 87 -DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 87 -~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
...+. .+.+.++.+|+|.... + | .+.+..+++|+.
T Consensus 181 ~~~~i~--~~~l~~~~~V~Divy~-~--T-~ll~~A~~~G~~ 216 (253)
T 3u62_A 181 EELPVS--DDSLKNLSLVYDVIYF-D--T-PLVVKARKLGVK 216 (253)
T ss_dssp CCCSCC--HHHHTTCSEEEECSSS-C--C-HHHHHHHHHTCS
T ss_pred CCCCCC--HHHhCcCCEEEEeeCC-C--c-HHHHHHHHCCCc
Confidence 01111 1235688999998777 3 2 333444556765
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=7.3e-07 Score=94.76 Aligned_cols=116 Identities=8% Similarity=0.131 Sum_probs=84.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH---HhcCCCceecccHHHHHHHHhcCCCCCCCcc
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELAR---IWKGGCIIRAVFLDRIKKAYQRNPNLASLVV 402 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~---iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~ 402 (505)
..++++|++||++.++.|+.++|++.++++.. +++.+++.+ .|+.| .+.|++++.....+.+.+.....++
T Consensus 177 g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~-----G~~~~~~~~~~~~w~~g-~~~S~l~~~~~~~l~~~d~~~~~~l 250 (482)
T 2pgd_A 177 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVL-----GLGHKEMAKAFEEWNKT-ELDSFLIEITASILKFQDADGKHLL 250 (482)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHTTT-TTCBHHHHHHHHHHHCBCTTSSBSG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CcCHHHHHHHHHHhcCC-CcCchHHHHHhHHhhccCCCCCeee
Confidence 46899999999999999999999999998651 266666555 48888 3689898887776665432223444
Q ss_pred cHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCh
Q 010637 403 DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARL 449 (505)
Q Consensus 403 ~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~ 449 (505)
+...+...+++++ +|++..|.++|+|+|.+.+++. +.+.++.+|.
T Consensus 251 d~i~d~~~~k~t~--~~~~~~A~~~Gv~~P~i~~av~~~~~s~~k~~r~ 297 (482)
T 2pgd_A 251 PKIRDSAGQKGTG--KWTAISALEYGVPVTLIGEAVFARCLSSLKDERI 297 (482)
T ss_dssp GGSCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHH
T ss_pred cccccccccccHH--HHHHHHHHHcCCCcchHHHHHHHHhhhhhhhHHH
Confidence 4444444456666 9999999999999999987666 4455555443
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.8e-07 Score=81.48 Aligned_cols=107 Identities=10% Similarity=0.048 Sum_probs=81.2
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGl----G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|+|||+ |.||..++.+|.+.||+ +|++|+.+... + .. ++..+.|++|+.+. +|++++++|+
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~---~--i~---G~~~~~sl~el~~~---vDlavi~vp~ 80 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGE---E--LF---GEEAVASLLDLKEP---VDILDVFRPP 80 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTS---E--ET---TEECBSSGGGCCSC---CSEEEECSCH
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccC---c--CC---CEEecCCHHHCCCC---CCEEEEEeCH
Confidence 47999999 89999999999999997 77788764111 1 01 36777889888765 8999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
..+.++++++...-- +.+|+..++. .+++.+.+++.|+.+++.-
T Consensus 81 -~~~~~v~~~~~~~gi-~~i~~~~g~~----~~~~~~~a~~~Gir~vgpn 124 (140)
T 1iuk_A 81 -SALMDHLPEVLALRP-GLVWLQSGIR----HPEFEKALKEAGIPVVADR 124 (140)
T ss_dssp -HHHTTTHHHHHHHCC-SCEEECTTCC----CHHHHHHHHHTTCCEEESC
T ss_pred -HHHHHHHHHHHHcCC-CEEEEcCCcC----HHHHHHHHHHcCCEEEcCC
Confidence 578888887776443 4577765553 3567777888899999743
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.7e-06 Score=80.34 Aligned_cols=96 Identities=14% Similarity=0.146 Sum_probs=65.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeee-CCHHHHHh-hcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVL-SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~v~-~l~~advIil~vp~~~ 84 (505)
|+|.|+|+|.+|..+|..|.+.|++|.++|+++++++.+.+..... -+... .+.+.+.+ .++.+|+||++++++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~---~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d- 76 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKAT---IIHGDGSHKEILRDAEVSKNDVVVILTPRD- 76 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSE---EEESCTTSHHHHHHHTCCTTCEEEECCSCH-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCe---EEEcCCCCHHHHHhcCcccCCEEEEecCCc-
Confidence 5899999999999999999999999999999999998876532110 01111 23332322 356799999999886
Q ss_pred hHHHHHHHHHhc-CCCCcEEEec
Q 010637 85 PVDQTIAALSEH-MSPGDCIIDG 106 (505)
Q Consensus 85 ~v~~vl~~l~~~-l~~g~iIId~ 106 (505)
.....+..+... .....+|.-.
T Consensus 77 ~~n~~~~~~a~~~~~~~~iia~~ 99 (218)
T 3l4b_C 77 EVNLFIAQLVMKDFGVKRVVSLV 99 (218)
T ss_dssp HHHHHHHHHHHHTSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCeEEEEE
Confidence 444444444444 3444455433
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-06 Score=91.94 Aligned_cols=98 Identities=10% Similarity=0.017 Sum_probs=77.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||..+|+.|...|.+|++||+++.+..+....+ +. ..++++++.. +|+|++++...
T Consensus 258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g-------~~-~~~l~ell~~---aDiVi~~~~t~--- 323 (479)
T 1v8b_A 258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEG-------FN-VVTLDEIVDK---GDFFITCTGNV--- 323 (479)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTT-------CE-ECCHHHHTTT---CSEEEECCSSS---
T ss_pred CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcC-------CE-ecCHHHHHhc---CCEEEECCChh---
Confidence 5799999999999999999999999999999998754444332 33 3578888776 99999996433
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCc-hhHHHHHH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWY-LNTERRIH 119 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~-~~t~~~~~ 119 (505)
.++ .+.+..+++|.+|||++.... -+...+.+
T Consensus 324 -~lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 324 -DVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp -SSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred -hhcCHHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 233 456677999999999999988 47777766
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.6e-06 Score=85.83 Aligned_cols=114 Identities=17% Similarity=0.247 Sum_probs=82.8
Q ss_pred CCcEEEEcccHHHHHHHHHHH-h-CCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVA-E-KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La-~-~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++||||||+|.||..++..|. + .+++|. ++|+++++.+++.+.... ....+.+++++++. ...|+|++|+|+
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~----~~~~~~~~~~ll~~-~~~D~V~i~tp~ 97 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAI----EAKDYNDYHDLIND-KDVEVVIITASN 97 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTC----CCEEESSHHHHHHC-TTCCEEEECSCG
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCC----CCeeeCCHHHHhcC-CCCCEEEEcCCc
Confidence 358999999999999999998 4 367765 899999999888776421 14678999999874 237999999999
Q ss_pred CchHHHHHHHHHhcCCCCc-EEEecC-CCCchhHHHHHHHHHHCCCeE
Q 010637 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~ 128 (505)
....+.+...+ ..|. ++++-- +....+.+++.+..++.|+.+
T Consensus 98 ~~h~~~~~~al----~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~ 141 (357)
T 3ec7_A 98 EAHADVAVAAL----NANKYVFCEKPLAVTAADCQRVIEAEQKNGKRM 141 (357)
T ss_dssp GGHHHHHHHHH----HTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHH----HCCCCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence 76555444333 2343 555532 445667777777777777644
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.8e-07 Score=89.18 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=79.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.+|+|||+|.||..++..|... ..+|.+|||+ +.+++.++... .| ..+..+ ++++++.. +|+|++|+|..
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g-~~~~~~-~~~eav~~---aDIVi~aT~s~ 194 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCG-VPARMA-APADIAAQ---ADIVVTATRST 194 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHT-SCEEEC-CHHHHHHH---CSEEEECCCCS
T ss_pred cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcC-CeEEEe-CHHHHHhh---CCEEEEccCCC
Confidence 5799999999999999999863 4689999999 55566543211 01 135666 99999988 99999999986
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCC-CeEEeC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG-LLYLGM 131 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~g-i~~i~~ 131 (505)
.+ ++. .+.+++|.+|++.++..|.. +++...+-.+. ..|+|.
T Consensus 195 ~p---vl~--~~~l~~G~~V~~vGs~~p~~-~El~~~~~~~a~~v~vD~ 237 (313)
T 3hdj_A 195 TP---LFA--GQALRAGAFVGAIGSSLPHT-RELDDEALRRARAVVVEW 237 (313)
T ss_dssp SC---SSC--GGGCCTTCEEEECCCSSTTC-CCCCHHHHHHCSEEEESC
T ss_pred Cc---ccC--HHHcCCCcEEEECCCCCCch-hhcCHHHHhcCCEEEECC
Confidence 43 332 35688999999999987754 34433333333 467774
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.6e-06 Score=87.39 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=79.5
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChHHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEE
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIi 77 (505)
|+|. ++||||||+|.||..++..|.+. +++| .++|+++++.+++.+.. ++ ..+.+++++++. ..+|+|+
T Consensus 1 M~m~-~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~------~~~~~~~~~~~ll~~-~~~D~V~ 72 (329)
T 3evn_A 1 MSLS-KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKY------HLPKAYDKLEDMLAD-ESIDVIY 72 (329)
T ss_dssp -----CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CC------CCSCEESCHHHHHTC-TTCCEEE
T ss_pred CCCC-ceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHc------CCCcccCCHHHHhcC-CCCCEEE
Confidence 5543 36899999999999999999876 4554 48899999887776543 23 367899999873 2389999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCc-EEEecC-CCCchhHHHHHHHHHHCCCeEEe
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+++|+....+.+... +..|+ ++++-- +....+.+++.+..+++|+.+..
T Consensus 73 i~tp~~~h~~~~~~a----l~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v 123 (329)
T 3evn_A 73 VATINQDHYKVAKAA----LLAGKHVLVEKPFTLTYDQANELFALAESCNLFLME 123 (329)
T ss_dssp ECSCGGGHHHHHHHH----HHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred ECCCcHHHHHHHHHH----HHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 999997654444333 23444 555532 44566777787877888876544
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=7.6e-07 Score=87.18 Aligned_cols=109 Identities=16% Similarity=0.099 Sum_probs=77.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++.|||+|.||++++..|++.|.+|+++||++++.+++. +. ++... +++++. .+|+||.++|.+...
T Consensus 119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~------~~~~~-~~~~l~----~~DiVInaTp~Gm~~ 186 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL------GCDCF-MEPPKS----AFDLIINATSASLHN 186 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH------TCEEE-SSCCSS----CCSEEEECCTTCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC------CCeEe-cHHHhc----cCCEEEEcccCCCCC
Confidence 5799999999999999999999999999999999998887 32 12222 233322 499999999987421
Q ss_pred HHHH--HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 87 DQTI--AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 87 ~~vl--~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+..+ +.+...++++.+++|+... | .|. +.+..+++|+..++
T Consensus 187 ~~~l~~~~l~~~l~~~~~v~D~vY~-P-~T~-ll~~A~~~G~~~~~ 229 (269)
T 3phh_A 187 ELPLNKEVLKGYFKEGKLAYDLAYG-F-LTP-FLSLAKELKTPFQD 229 (269)
T ss_dssp SCSSCHHHHHHHHHHCSEEEESCCS-S-CCH-HHHHHHHTTCCEEC
T ss_pred CCCCChHHHHhhCCCCCEEEEeCCC-C-chH-HHHHHHHCcCEEEC
Confidence 1111 2222245578999999886 4 554 66667788876544
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-06 Score=92.43 Aligned_cols=101 Identities=9% Similarity=-0.047 Sum_probs=76.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.||+.+|+.|...|.+|++|||++.+..+....+ +. ..++++++.. +|+|++++.....+
T Consensus 278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G-------~~-~~~l~ell~~---aDiVi~~~~t~~lI 346 (494)
T 3d64_A 278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEG-------YR-VVTMEYAADK---ADIFVTATGNYHVI 346 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTT-------CE-ECCHHHHTTT---CSEEEECSSSSCSB
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcC-------CE-eCCHHHHHhc---CCEEEECCCccccc
Confidence 5799999999999999999999999999999998753333322 33 3478888776 99999998443222
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCch-hHHHHHHHHH
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEAS 122 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~-~t~~~~~~l~ 122 (505)
. .+.+..+++|.+|||++..... +...+ +.+.
T Consensus 347 ~---~~~l~~MK~gAilINvgrg~veID~~aL-~AL~ 379 (494)
T 3d64_A 347 N---HDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQ 379 (494)
T ss_dssp C---HHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSE
T ss_pred C---HHHHhhCCCCcEEEEcCCCcchhchHHH-Hhhh
Confidence 1 4566778999999999998764 65555 4443
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.5e-06 Score=85.39 Aligned_cols=122 Identities=14% Similarity=0.093 Sum_probs=86.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.|||.|||+|.+|+.+|..|++ .++|.+.|++.++++.+.+.... +.. ..+.+++.+.++++|+||.|+|..
T Consensus 16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~-----~~~d~~d~~~l~~~~~~~DvVi~~~p~~- 88 (365)
T 3abi_A 16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATP-----LKVDASNFDKLVEVMKEFELVIGALPGF- 88 (365)
T ss_dssp CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEE-----EECCTTCHHHHHHHHTTCSEEEECCCGG-
T ss_pred ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCc-----EEEecCCHHHHHHHHhCCCEEEEecCCc-
Confidence 4799999999999999999876 58999999999988876543211 221 245566655566699999999985
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE-eCCCCCCHH
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEE 138 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsGg~~ 138 (505)
.-..+++.. +..|.-++|.|-.. ....++.+..++.|+.++ ++++..|..
T Consensus 89 ~~~~v~~~~---~~~g~~yvD~s~~~-~~~~~l~~~a~~~g~~~i~~~G~~PG~~ 139 (365)
T 3abi_A 89 LGFKSIKAA---IKSKVDMVDVSFMP-ENPLELRDEAEKAQVTIVFDAGFAPGLS 139 (365)
T ss_dssp GHHHHHHHH---HHHTCEEEECCCCS-SCGGGGHHHHHHTTCEEECCCBTTTBHH
T ss_pred ccchHHHHH---HhcCcceEeeeccc-hhhhhhhhhhccCCceeeecCCCCCchH
Confidence 334454443 45688899987543 455566777778888765 466666643
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=9.8e-07 Score=78.27 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=79.3
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGl----G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|+|||+ |.+|..++.+|.+.||+ +|++++.. + .. . ++..+.+++|+.+. +|++++++|+
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~----~i--~---G~~~y~sl~~l~~~---vDlvvi~vp~ 87 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-E----EV--L---GRKCYPSVLDIPDK---IEVVDLFVKP 87 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-S----EE--T---TEECBSSGGGCSSC---CSEEEECSCH
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-C----eE--C---CeeccCCHHHcCCC---CCEEEEEeCH
Confidence 46999999 79999999999999997 66666653 1 11 1 36777899988765 8999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGV 133 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pv 133 (505)
..+.++++++...- .+.+++..++. ..++.+.+++.|+++++.-.
T Consensus 88 -~~~~~vv~~~~~~g-i~~i~~~~g~~----~~~l~~~a~~~Gi~vvGpnc 132 (144)
T 2d59_A 88 -KLTMEYVEQAIKKG-AKVVWFQYNTY----NREASKKADEAGLIIVANRC 132 (144)
T ss_dssp -HHHHHHHHHHHHHT-CSEEEECTTCC----CHHHHHHHHHTTCEEEESCC
T ss_pred -HHHHHHHHHHHHcC-CCEEEECCCch----HHHHHHHHHHcCCEEEcCCc
Confidence 57888888777643 33566554432 45677788889999997543
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.22 E-value=8.5e-06 Score=83.08 Aligned_cols=120 Identities=11% Similarity=0.112 Sum_probs=83.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++++|||||+|.||..++..|.+. ++++ .++|+++++.+.+.+..... .....+.+++++++. ..+|+|++++|+
T Consensus 5 ~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~--~~~~~~~~~~~ll~~-~~~D~V~i~tp~ 81 (362)
T 1ydw_A 5 TQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYP--ESTKIHGSYESLLED-PEIDALYVPLPT 81 (362)
T ss_dssp -CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCC--TTCEEESSHHHHHHC-TTCCEEEECCCG
T ss_pred CceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCC--CCCeeeCCHHHHhcC-CCCCEEEEcCCh
Confidence 346899999999999999999885 5665 58999999988877653210 013567899999863 238999999998
Q ss_pred CchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
....+.+ .. .+..|+ ++++. -+....+.+++.+..++.|+.+..+
T Consensus 82 ~~h~~~~-~~---al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~~ 128 (362)
T 1ydw_A 82 SLHVEWA-IK---AAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDG 128 (362)
T ss_dssp GGHHHHH-HH---HHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEEC
T ss_pred HHHHHHH-HH---HHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 7543333 32 344565 45543 2445566777777777788766543
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.20 E-value=6.2e-06 Score=83.17 Aligned_cols=114 Identities=9% Similarity=0.089 Sum_probs=83.9
Q ss_pred CCcEEEEcccHHHH-HHHHHHHhCCCcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQ-NLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~-~lA~~La~~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++||||||+|.||. .++..|...|++| .++|+++++.+.+.+... ....+++++++++. ...|+|++++|+.
T Consensus 4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~-----~~~~~~~~~~ll~~-~~~D~V~i~tp~~ 77 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFP-----SVPFAASAEQLITD-ASIDLIACAVIPC 77 (336)
T ss_dssp CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHST-----TCCBCSCHHHHHTC-TTCCEEEECSCGG
T ss_pred ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcC-----CCcccCCHHHHhhC-CCCCEEEEeCChh
Confidence 46999999999996 6888887788985 689999999888877532 24567899999873 2389999999997
Q ss_pred chHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEE
Q 010637 84 SPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (505)
...+.++..+ ..|+ ++++. .+....+.+++.+..++.|+.+.
T Consensus 78 ~h~~~~~~al----~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 121 (336)
T 2p2s_A 78 DRAELALRTL----DAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFA 121 (336)
T ss_dssp GHHHHHHHHH----HTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEE
T ss_pred hHHHHHHHHH----HCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 6655444333 3455 66664 44556677777777777776554
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.20 E-value=9.4e-06 Score=82.95 Aligned_cols=116 Identities=20% Similarity=0.180 Sum_probs=77.3
Q ss_pred CCcCC-CCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010637 1 MEASA-LSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 1 m~~~~-~~~IgIIGlG~MG~~-lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
|++++ ++||||||+|.||.. .+..|.+. +++|. ++|++++++.+ ... +...+.+++++++. ...|+|
T Consensus 1 M~~~~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~---~~~-----~~~~~~~~~~ll~~-~~~D~V 71 (364)
T 3e82_A 1 MSLSNNTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR---DLP-----DVTVIASPEAAVQH-PDVDLV 71 (364)
T ss_dssp ------CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH---HCT-----TSEEESCHHHHHTC-TTCSEE
T ss_pred CCCCCCcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh---hCC-----CCcEECCHHHHhcC-CCCCEE
Confidence 55443 458999999999997 67677765 67765 88999987542 211 35778999999873 238999
Q ss_pred EEEcCCCchHHHHHHHHHhcCCCCcEEEecC--CCCchhHHHHHHHHHHCCCeEE
Q 010637 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGG--NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~s--t~~~~~t~~~~~~l~~~gi~~i 129 (505)
++|+|+....+.+... +..|+-|+--- +....+.+++.+..++.|+.+.
T Consensus 72 ~i~tp~~~H~~~~~~a----l~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~ 122 (364)
T 3e82_A 72 VIASPNATHAPLARLA----LNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLS 122 (364)
T ss_dssp EECSCGGGHHHHHHHH----HHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred EEeCChHHHHHHHHHH----HHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 9999997665544433 33455444322 4455677777777777777554
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.6e-06 Score=88.76 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCC-----eeee----------CCHHHHHhhcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLP-----LTGH----------YTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~-----i~~~----------~s~~e~v~~l~ 71 (505)
.+|+|||+|.||..+++.+...|.+|+++||++++.+.+.+.+...-.+. .... ...+.+.+.++
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~ 264 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAIT 264 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHT
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHh
Confidence 58999999999999999999999999999999999888776432100000 0000 01223333445
Q ss_pred CCcEEEEEc--CCCchHHHHH-HHHHhcCCCCcEEEecCC
Q 010637 72 RPRSVIILV--KAGSPVDQTI-AALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 72 ~advIil~v--p~~~~v~~vl-~~l~~~l~~g~iIId~st 108 (505)
.+|+||.++ |... ...++ ++....+++|.+|||++-
T Consensus 265 ~aDIVI~tv~iPg~~-ap~Lvt~emv~~MkpGsVIVDvA~ 303 (381)
T 3p2y_A 265 KFDIVITTALVPGRP-APRLVTAAAATGMQPGSVVVDLAG 303 (381)
T ss_dssp TCSEEEECCCCTTSC-CCCCBCHHHHHTSCTTCEEEETTG
T ss_pred cCCEEEECCCCCCcc-cceeecHHHHhcCCCCcEEEEEeC
Confidence 599999986 4321 11122 677778899999999874
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=7.8e-06 Score=82.03 Aligned_cols=105 Identities=13% Similarity=0.106 Sum_probs=66.8
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhccc-CCC--CeeeeCCHHHHHhhcCCCcE
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE-GQL--PLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~-g~~--~i~~~~s~~e~v~~l~~adv 75 (505)
|...+++||+|||+|.||.++|..|+..|. +|.++|+++++.+......... ... +.++..+..+. ++.+|+
T Consensus 1 m~~~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~a---l~~aDv 77 (316)
T 1ldn_A 1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDD---CRDADL 77 (316)
T ss_dssp CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGG---TTTCSE
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHH---hCCCCE
Confidence 555456799999999999999999998875 8999999987655432111000 000 12222233333 344999
Q ss_pred EEEEcCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 76 VIILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 76 Iil~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
||++++.+. .+.++++.+.++. ++.+++..||-
T Consensus 78 Viia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tNP 125 (316)
T 1ldn_A 78 VVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNP 125 (316)
T ss_dssp EEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSS
T ss_pred EEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCCc
Confidence 999976542 2344445666654 66667777773
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.3e-06 Score=88.17 Aligned_cols=96 Identities=13% Similarity=0.156 Sum_probs=68.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCe-----------e-e------------eCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-----------T-G------------HYT 62 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-----------~-~------------~~s 62 (505)
.+|+|||+|.||..+++.+...|.+|++||+++++.+.+.+.+... ..+ . . ..+
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~--~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~ 268 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKF--IAVEDEEFKAAETAGGYAKEMSGEYQVKQAAL 268 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEE--CCCCC-----------------CHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCce--eecccccccccccccchhhhcchhhhhhhHhH
Confidence 5899999999999999999999999999999999888777644310 000 0 0 013
Q ss_pred HHHHHhhcCCCcEEEEEc--CCCchHHHH-HHHHHhcCCCCcEEEecCC
Q 010637 63 PRDFVLSIQRPRSVIILV--KAGSPVDQT-IAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 63 ~~e~v~~l~~advIil~v--p~~~~v~~v-l~~l~~~l~~g~iIId~st 108 (505)
+++++.. +|+||.++ |.... ..+ -++.+..+++|.+|||++.
T Consensus 269 l~e~l~~---aDVVI~tvlipg~~a-p~Lvt~emv~~Mk~GsVIVDvA~ 313 (405)
T 4dio_A 269 VAEHIAK---QDIVITTALIPGRPA-PRLVTREMLDSMKPGSVVVDLAV 313 (405)
T ss_dssp HHHHHHT---CSEEEECCCCSSSCC-CCCBCHHHHTTSCTTCEEEETTG
T ss_pred HHHHhcC---CCEEEECCcCCCCCC-CEEecHHHHhcCCCCCEEEEEeC
Confidence 4455554 99999986 43211 111 2677788999999999974
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.1e-06 Score=87.74 Aligned_cols=91 Identities=10% Similarity=0.026 Sum_probs=71.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|+|||+|.+|..+|..|...|.+|.++|+++.+.......+ +. ..++++++.. +|+|+++......+
T Consensus 212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G-------~~-~~sL~eal~~---ADVVilt~gt~~iI 280 (436)
T 3h9u_A 212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEG-------YQ-VLLVEDVVEE---AHIFVTTTGNDDII 280 (436)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHTTT---CSEEEECSSCSCSB
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhC-------Ce-ecCHHHHHhh---CCEEEECCCCcCcc
Confidence 5799999999999999999999999999999997765554433 33 3488888887 99999866543222
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
. .+....+++|.+||+.+...+
T Consensus 281 ~---~e~l~~MK~gAIVINvgRg~v 302 (436)
T 3h9u_A 281 T---SEHFPRMRDDAIVCNIGHFDT 302 (436)
T ss_dssp C---TTTGGGCCTTEEEEECSSSGG
T ss_pred C---HHHHhhcCCCcEEEEeCCCCC
Confidence 2 345677899999999998765
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.15 E-value=2.7e-06 Score=90.20 Aligned_cols=114 Identities=18% Similarity=0.251 Sum_probs=84.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH---Hhc-CCCceecccHHHHHHHHhcCCCCCCCc
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELAR---IWK-GGCIIRAVFLDRIKKAYQRNPNLASLV 401 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~---iW~-~Gciirs~lL~~i~~~~~~~~~~~~ll 401 (505)
..++++|+++|++.+..++.++|.+.++++. + ++.+++.+ .|+ .| ...|++++.....+.+.+......
T Consensus 179 G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~----G--~~~~~~~~l~~~w~~~g-~~~s~l~~~~~~~l~~~d~~G~~~ 251 (478)
T 1pgj_A 179 GAGSCVKMYHNSGEYAILQIWGEVFDILRAM----G--LNNDEVAAVLEDWKSKN-FLKSYMLDISIAAARAKDKDGSYL 251 (478)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----T--CCHHHHHHHHHHHHHTS-TTCBHHHHHHHHHHHCBCTTSSBG
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc----C--CCHHHHHHHHHHhccCC-CcCchHHHhhchhhhcCCCCChhH
Confidence 5678999999999999999999999999843 2 66665555 577 77 678999988877775422111133
Q ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCC
Q 010637 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRAR 448 (505)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~ 448 (505)
+|...+...+++++ +|++..|.+.|+|+|.+.++++ +++..+.+|
T Consensus 252 ld~i~D~~~~kgtg--~~~~~~A~~~Gv~~Pi~~~av~~r~ls~~~~~r 298 (478)
T 1pgj_A 252 TEHVMDRIGSKGTG--LWSAQEALEIGVPAPSLNMAVVSRQFTMYKTER 298 (478)
T ss_dssp GGGBCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHhcCccHH--HHHHHHHHHhCCCChHHHHHHHHHHHhCCCCHH
Confidence 34333333446666 9999999999999999999986 566655554
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.8e-05 Score=80.05 Aligned_cols=116 Identities=14% Similarity=0.044 Sum_probs=82.0
Q ss_pred CCCCcEEEEccc-HHHHHHHHHHHhC--CCcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 4 SALSRIGLAGLA-VMGQNLALNVAEK--GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 4 ~~~~~IgIIGlG-~MG~~lA~~La~~--G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
..+.+|||||+| .||...+..|.+. +++| .++|+++++.+++.+.... ...+++++++++. ...|+|+++
T Consensus 16 ~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~-----~~~~~~~~~ll~~-~~vD~V~i~ 89 (340)
T 1zh8_A 16 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN-----PAVFDSYEELLES-GLVDAVDLT 89 (340)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS-----CEEESCHHHHHHS-SCCSEEEEC
T ss_pred CCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCC-----CcccCCHHHHhcC-CCCCEEEEe
Confidence 345689999999 8999999999886 4665 5899999999888775421 2678999999874 237999999
Q ss_pred cCCCchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEE
Q 010637 80 VKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (505)
+|+....+-+...+ ..|+ ++++- -+....+.+++.+..++.|+.+.
T Consensus 90 tp~~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 137 (340)
T 1zh8_A 90 LPVELNLPFIEKAL----RKGVHVICEKPISTDVETGKKVVELSEKSEKTVY 137 (340)
T ss_dssp CCGGGHHHHHHHHH----HTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEE
T ss_pred CCchHHHHHHHHHH----HCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 99976544443333 3444 55553 12345566677777777776543
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=9.6e-06 Score=81.43 Aligned_cols=105 Identities=10% Similarity=0.076 Sum_probs=61.7
Q ss_pred CCcCC-CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhccc-CC-CCeeeeCCHHHHHhhcCCCcE
Q 010637 1 MEASA-LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE-GQ-LPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 1 m~~~~-~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~-g~-~~i~~~~s~~e~v~~l~~adv 75 (505)
|.|.+ .+||+|||+|.+|.+++..|+..|+ +|.++|+++++++......... .. .+++...+..+ .++.+|+
T Consensus 1 ~~m~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~---a~~~aDv 77 (318)
T 1y6j_A 1 MEMVKSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYS---DVKDCDV 77 (318)
T ss_dssp ------CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGG---GGTTCSE
T ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHH---HhCCCCE
Confidence 44432 4699999999999999999999998 9999999987654322211100 00 02223222222 2445999
Q ss_pred EEEEcCCCch---------------HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 76 VIILVKAGSP---------------VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 76 Iil~vp~~~~---------------v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
||++++.+.. ++++.+.+.++ .++.+|+..||-
T Consensus 78 Vii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP 125 (318)
T 1y6j_A 78 IVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNP 125 (318)
T ss_dssp EEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSS
T ss_pred EEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCc
Confidence 9999876431 34555666666 467777777553
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-05 Score=79.71 Aligned_cols=98 Identities=11% Similarity=0.113 Sum_probs=66.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHH----HHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDE----TLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~----l~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|||+|||+|.||.++|..|+.+|+ +|.+||+++++++. +....... ...++..+++ .+.++. +|+||++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~---aDiVVia 76 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKG---SEIIVVT 76 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCC---CCEEEEC
Confidence 589999999999999999999998 99999999988652 11111000 0013555556 444454 9999999
Q ss_pred cCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
...+. .++++.+.+..+ .++.+|+..||-
T Consensus 77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvsNP 120 (294)
T 1oju_A 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNP 120 (294)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSS
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCc
Confidence 74431 123333455555 577888888864
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-06 Score=84.72 Aligned_cols=114 Identities=17% Similarity=0.046 Sum_probs=79.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|+|+|.||.+++..|++.|. +|+++||++++.+++.+.....+ ++.. .+++++.. .+|+||.++|.+..
T Consensus 127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~--~~~~-~~~~~l~~---~aDiIInaTp~gm~ 200 (281)
T 3o8q_A 127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG--EVKA-QAFEQLKQ---SYDVIINSTSASLD 200 (281)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS--CEEE-EEGGGCCS---CEEEEEECSCCCC-
T ss_pred CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC--CeeE-eeHHHhcC---CCCEEEEcCcCCCC
Confidence 579999999999999999999996 99999999999988877543211 1232 24444433 48999999999854
Q ss_pred HHHH-HHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCe-EEe
Q 010637 86 VDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL-YLG 130 (505)
Q Consensus 86 v~~v-l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~-~i~ 130 (505)
.+.. +. ...+.++.+|+|+... |..|. +.+..+++|+. .++
T Consensus 201 ~~~~~l~--~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~~~~~ 243 (281)
T 3o8q_A 201 GELPAID--PVIFSSRSVCYDMMYG-KGYTV-FNQWARQHGCAQAID 243 (281)
T ss_dssp ---CSCC--GGGEEEEEEEEESCCC-SSCCH-HHHHHHHTTCSEEEC
T ss_pred CCCCCCC--HHHhCcCCEEEEecCC-CccCH-HHHHHHHCCCCEEEC
Confidence 2211 11 1246678999999876 44554 44666778875 443
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-05 Score=80.73 Aligned_cols=101 Identities=12% Similarity=0.104 Sum_probs=64.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHh---hcccCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR---AHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~---~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
+.+||+|||+|.+|.+++..|+..|. +|.++|+++++++..... ....-+.++....+..+.++ .+|+||++
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~---~aDvVvi~ 81 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCH---DADLVVIC 81 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGT---TCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhC---CCCEEEEC
Confidence 34699999999999999999998884 899999998776542211 11000002233223333344 49999999
Q ss_pred cCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+. .++++.+.+.++ .++.+|+..||-
T Consensus 82 ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP 125 (317)
T 3d0o_A 82 AGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNP 125 (317)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCc
Confidence 86542 233444556665 577777777653
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=3.9e-06 Score=85.72 Aligned_cols=108 Identities=11% Similarity=0.151 Sum_probs=75.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|+|+|+|.||..+|+.|.+.|.+|.++|+++++++++.++.. .... +.+++.. ..+|+++.|..... +
T Consensus 174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~g------a~~v-~~~~ll~--~~~DIvip~a~~~~-I 243 (364)
T 1leh_A 174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEG------ADAV-APNAIYG--VTCDIFAPCALGAV-L 243 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC------CEEC-CGGGTTT--CCCSEEEECSCSCC-B
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcC------CEEE-ChHHHhc--cCCcEeeccchHHH-h
Confidence 57999999999999999999999999999999998887776521 2233 4444433 14899998865542 2
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
.. ...+.+ +..+|++.+|.. ....+..+.+.++|+.|+
T Consensus 244 ~~---~~~~~l-g~~iV~e~An~p-~t~~ea~~~L~~~Gi~~~ 281 (364)
T 1leh_A 244 ND---FTIPQL-KAKVIAGSADNQ-LKDPRHGKYLHELGIVYA 281 (364)
T ss_dssp ST---THHHHC-CCSEECCSCSCC-BSSHHHHHHHHHHTCEEC
T ss_pred CH---HHHHhC-CCcEEEeCCCCC-cccHHHHHHHHhCCCEEe
Confidence 21 122334 456777777664 333456677888888664
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.5e-05 Score=83.45 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=57.4
Q ss_pred CCcCCCCcEEEEcccHH--HHHHHHHHHh----CCCcEEEEeCChHHHHHHHHhhcc--cCCCCeeeeCCHHHHHhhcCC
Q 010637 1 MEASALSRIGLAGLAVM--GQNLALNVAE----KGFPISVYNRTTSKVDETLDRAHR--EGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~M--G~~lA~~La~----~G~~V~v~dr~~~~~~~l~~~~~~--~g~~~i~~~~s~~e~v~~l~~ 72 (505)
|.|. .+||+|||.|.| |.+++..|+. .| +|.+||+++++++........ ....+++.+++++++++.
T Consensus 1 m~m~-~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~d--- 75 (450)
T 3fef_A 1 MSLD-QIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSA--- 75 (450)
T ss_dssp --CC-CEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTT---
T ss_pred CCCC-CCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcC---
Confidence 5443 369999999997 6899988886 57 999999999887665432210 000147788899988887
Q ss_pred CcEEEEEcCCC
Q 010637 73 PRSVIILVKAG 83 (505)
Q Consensus 73 advIil~vp~~ 83 (505)
+|+||++++.+
T Consensus 76 ADfVI~airvG 86 (450)
T 3fef_A 76 ADIVIISILPG 86 (450)
T ss_dssp CSEEEECCCSS
T ss_pred CCEEEeccccC
Confidence 99999999765
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.3e-05 Score=79.61 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=79.4
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~-lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++||||||+|.||.. .+..|.+. +++|. ++|+++++.+ +... +...+++++++++. ...|+|++++|+
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp~ 77 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH---ADWP-----AIPVVSDPQMLFND-PSIDLIVIPTPN 77 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---TTCS-----SCCEESCHHHHHHC-SSCCEEEECSCT
T ss_pred CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH---hhCC-----CCceECCHHHHhcC-CCCCEEEEeCCh
Confidence 458999999999997 77777766 67765 8899998765 2111 35678999999874 347999999999
Q ss_pred CchHHHHHHHHHhcCCCCc-EEEecC-CCCchhHHHHHHHHHHCCCeEE
Q 010637 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i 129 (505)
....+.+...+ ..|+ ++++-- +....+.+++.+..++.|+.+.
T Consensus 78 ~~H~~~~~~al----~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~ 122 (352)
T 3kux_A 78 DTHFPLAQSAL----AAGKHVVVDKPFTVTLSQANALKEHADDAGLLLS 122 (352)
T ss_dssp TTHHHHHHHHH----HTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHH----HCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 86655444333 3454 666644 4556677777777777777554
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.3e-05 Score=80.66 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=83.1
Q ss_pred CCcEEEEccc-HHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLA-VMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG-~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++||||||+| .||..++.+|.+. +++|. ++|+++++.+++.+.. ++..+.|++++++. ...|+|++++|+
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~~ell~~-~~vD~V~i~tp~ 74 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEY------GIPVFATLAEMMQH-VQMDAVYIASPH 74 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHH------TCCEESSHHHHHHH-SCCSEEEECSCG
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc------CCCeECCHHHHHcC-CCCCEEEEcCCc
Confidence 4689999999 9999999999876 55654 8899999988887654 35678999999875 348999999999
Q ss_pred CchHHHHHHHHHhcCCCCc-EEEecC-CCCchhHHHHHHHHHHCCCeEEe
Q 010637 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
....+.+...+ ..|+ ++++-- +....+.+++.+..+++|+.+.-
T Consensus 75 ~~H~~~~~~al----~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v 120 (387)
T 3moi_A 75 QFHCEHVVQAS----EQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVV 120 (387)
T ss_dssp GGHHHHHHHHH----HTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHH----HCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEE
Confidence 76554443333 3444 455432 34556777777777777776543
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.1e-06 Score=86.39 Aligned_cols=85 Identities=26% Similarity=0.529 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHhccCC-cchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHH
Q 010637 215 LSNAELAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCR 293 (505)
Q Consensus 215 l~~~~i~~v~~~~~~g~-~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r 293 (505)
++.+++.++ |+.|. +.||+++++.+++.++.. ++.+.+.+.++|+|+|++++|.+.|||+|++++|+++|
T Consensus 260 ~d~~~i~~~---~~~g~~~~s~~l~~~~~~~~~~p~------~~~~~~~~~d~g~~r~~~~~A~~~gvp~p~~~~al~~~ 330 (358)
T 4e21_A 260 LDLADITEV---WRRGSVISSWLLDLSATALLDSPD------LQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSSALYER 330 (358)
T ss_dssp CCHHHHHHH---HTTTSTTCBHHHHHHHHHHHHCTT------CTTC--CCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCHHHHHHH---HhCccHHHHHHHHHHHHHHhhCCC------hHHHHHHHHhcCcHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 777777665 78886 799999999988875321 12344556678999999999999999999999999999
Q ss_pred HHhcchHHHHHHHHHhc
Q 010637 294 YLSGLKEEREKAAKVLK 310 (505)
Q Consensus 294 ~~s~~~~~r~~~~~~~~ 310 (505)
+.|. .+|..+++++.
T Consensus 331 ~~s~--~~~~~~~~l~~ 345 (358)
T 4e21_A 331 FSSR--GEDDFANRLLS 345 (358)
T ss_dssp HHHT--TTTHHHHHHHH
T ss_pred HHHC--CCcccHHHHHH
Confidence 9983 34555555554
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.5e-05 Score=79.03 Aligned_cols=114 Identities=13% Similarity=0.187 Sum_probs=80.2
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~-lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+||||||+|.||.. ++..+.+. +.+|. ++|+++++++++.++... ...++|++++++. ...|+|++++|+
T Consensus 23 mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~-----~~~y~d~~ell~~-~~iDaV~I~tP~ 96 (350)
T 4had_A 23 MLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSV-----PHAFGSYEEMLAS-DVIDAVYIPLPT 96 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTC-----SEEESSHHHHHHC-SSCSEEEECSCG
T ss_pred ccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCC-----CeeeCCHHHHhcC-CCCCEEEEeCCC
Confidence 469999999999976 45666665 56765 789999999998876431 2568999999875 347999999999
Q ss_pred CchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEE
Q 010637 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (505)
....+-++..|. .|+ +++.- =+....+.+++.+..++.|+.+.
T Consensus 97 ~~H~~~~~~al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 141 (350)
T 4had_A 97 SQHIEWSIKAAD----AGKHVVCEKPLALKAGDIDAVIAARDRNKVVVT 141 (350)
T ss_dssp GGHHHHHHHHHH----TTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEE
T ss_pred chhHHHHHHHHh----cCCEEEEeCCcccchhhHHHHHHHHHHcCCcee
Confidence 876655544443 343 45542 12234567777777777776543
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-05 Score=84.50 Aligned_cols=119 Identities=11% Similarity=0.049 Sum_probs=81.8
Q ss_pred CCcEEEEcccHHHH-HHHHHHHhC-CCcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQ-NLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~-~lA~~La~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++||||||+|.||. .++..|.+. +++| .++|+++++.+.+.+...... .++..+.+++++++. ...|+|++++|+
T Consensus 83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~-~~~~~~~~~~~ll~~-~~vD~V~iatp~ 160 (433)
T 1h6d_A 83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDP-RKIYDYSNFDKIAKD-PKIDAVYIILPN 160 (433)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCG-GGEECSSSGGGGGGC-TTCCEEEECSCG
T ss_pred ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCc-ccccccCCHHHHhcC-CCCCEEEEcCCc
Confidence 35899999999997 899999875 5665 589999999888776532100 012357889998863 238999999999
Q ss_pred CchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEEe
Q 010637 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
....+.+... +..|+ ++++. .+....+.+++.+..+++|+.+..
T Consensus 161 ~~h~~~~~~a----l~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v 206 (433)
T 1h6d_A 161 SLHAEFAIRA----FKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMI 206 (433)
T ss_dssp GGHHHHHHHH----HHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred hhHHHHHHHH----HHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEE
Confidence 7654444333 33454 66653 344566777777777777776654
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.9e-06 Score=83.04 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=65.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++||||||+|.||..++..|.+. +++|. ++|+++++++. .+. .....+++.+. ..+|+|++|+|+.
T Consensus 9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~-----~~~~~~~l~~~----~~~DvViiatp~~ 76 (304)
T 3bio_A 9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQ-----PFRVVSDIEQL----ESVDVALVCSPSR 76 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCT-----TSCEESSGGGS----SSCCEEEECSCHH
T ss_pred CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCC-----CcCCHHHHHhC----CCCCEEEECCCch
Confidence 35899999999999999999874 67876 79999987654 111 12223444433 3499999999986
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC---CchhHHHHHHHHHHCCCeE
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE---WYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~---~~~~t~~~~~~l~~~gi~~ 128 (505)
...+ .+. ..+..|..|++.... ......++.+..++.|..+
T Consensus 77 ~h~~-~~~---~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~ 120 (304)
T 3bio_A 77 EVER-TAL---EILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAA 120 (304)
T ss_dssp HHHH-HHH---HHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEE
T ss_pred hhHH-HHH---HHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEE
Confidence 4433 322 345568888876432 2334455556666666543
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.5e-05 Score=81.96 Aligned_cols=88 Identities=17% Similarity=0.219 Sum_probs=70.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH------HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS------KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~------~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
++|+|||.|.-|.+-|+||.+.|.+|.+--|... ..+...+.+ +.+ .+++|++.. +|+|++.+
T Consensus 38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~G-------f~v-~~~~eA~~~---ADvV~~L~ 106 (491)
T 3ulk_A 38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG-------FKV-GTYEELIPQ---ADLVINLT 106 (491)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTT-------CEE-EEHHHHGGG---CSEEEECS
T ss_pred CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCC-------CEe-cCHHHHHHh---CCEEEEeC
Confidence 5799999999999999999999999999887432 223333332 444 478888887 99999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEec
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDG 106 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~ 106 (505)
|+. .-..+.+.+.|.|++|+.+.-.
T Consensus 107 PD~-~q~~vy~~I~p~lk~G~~L~fa 131 (491)
T 3ulk_A 107 PDK-QHSDVVRTVQPLMKDGAALGYS 131 (491)
T ss_dssp CGG-GHHHHHHHHGGGSCTTCEEEES
T ss_pred Chh-hHHHHHHHHHhhCCCCCEEEec
Confidence 995 5566778899999999988753
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2.1e-05 Score=83.40 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=84.2
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhC--CCcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAGL----AVMGQNLALNVAEK--GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGl----G~MG~~lA~~La~~--G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
++|||||+ |.||..++..|.+. +++| .++|+++++.+.+.+..... ....+.+++++++. ...|+|++|
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~---~~~~~~d~~ell~~-~~vD~V~I~ 115 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLK---HATGFDSLESFAQY-KDIDMIVVS 115 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCT---TCEEESCHHHHHHC-TTCSEEEEC
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCC---cceeeCCHHHHhcC-CCCCEEEEc
Confidence 58999999 99999999999986 6775 58999999998887753211 13578999999863 238999999
Q ss_pred cCCCchHHHHHHHHHhcCC---CCcEEEec-CCCCchhHHHHHHHHHHCC-CeEE
Q 010637 80 VKAGSPVDQTIAALSEHMS---PGDCIIDG-GNEWYLNTERRIHEASQKG-LLYL 129 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~---~g~iIId~-st~~~~~t~~~~~~l~~~g-i~~i 129 (505)
+|+....+.++..|..... .-.++++. -+....+.+++.+..++.| +.+.
T Consensus 116 tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~~ 170 (479)
T 2nvw_A 116 VKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTI 170 (479)
T ss_dssp SCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEE
T ss_pred CCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEE
Confidence 9987655544443332100 02477775 3445667777877777777 6543
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.07 E-value=6.7e-06 Score=83.32 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=76.2
Q ss_pred CCcEEEEcccHHHHHHHHH-H-Hh-CCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALN-V-AE-KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~-L-a~-~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
++||||||+|.||..+... + .. .+++|. ++|+++++.+...+.. ++..++|++++++. ...|+|++|+|
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~i~tp 74 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYS------HIHFTSDLDEVLND-PDVKLVVVCTH 74 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGT------TCEEESCTHHHHTC-TTEEEEEECSC
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcC------CCceECCHHHHhcC-CCCCEEEEcCC
Confidence 5689999999999975444 4 33 367776 8999988763322211 36788999999874 34799999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecC--CCCchhHHHHHHHHHHCCCeEE
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGG--NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~s--t~~~~~t~~~~~~l~~~gi~~i 129 (505)
+....+.+... +..|+.|+.-- +....+.+++.+..+++|+.+.
T Consensus 75 ~~~h~~~~~~a----l~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 120 (345)
T 3f4l_A 75 ADSHFEYAKRA----LEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVT 120 (345)
T ss_dssp GGGHHHHHHHH----HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred hHHHHHHHHHH----HHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 97665544433 33555554322 3455677777777777777654
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.05 E-value=1.1e-05 Score=80.43 Aligned_cols=96 Identities=11% Similarity=0.105 Sum_probs=65.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHH---HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSK---VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~---~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
++||+|||+|.||..+|..|+.+|+ +|.++|++++. ..++..... . +++.+.++++ ++ .+|+||+++
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~-~---~i~~t~d~~~-l~---~aD~Vi~aa 85 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNL-P---NVEISKDLSA-SA---HSKVVIFTV 85 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTC-T---TEEEESCGGG-GT---TCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcC-C---CeEEeCCHHH-HC---CCCEEEEcC
Confidence 4689999999999999999999999 99999999852 222322111 1 4677677643 33 399999997
Q ss_pred CCC--------------chHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KAG--------------SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~--------------~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
..+ ..+++++..+.++. ++.+++..||..
T Consensus 86 g~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~ 128 (303)
T 2i6t_A 86 NSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPV 128 (303)
T ss_dssp CC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChH
Confidence 222 12445556676665 778888888843
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.05 E-value=3.5e-05 Score=77.13 Aligned_cols=100 Identities=14% Similarity=0.177 Sum_probs=65.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC--hHHHHHHH----Hhhccc-CCCCeeeeCCHHHHHhhcCCCcEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT--TSKVDETL----DRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~--~~~~~~l~----~~~~~~-g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
.+||+|||+|.||.++|..|+.+|+ +|.++|++ +++.+... ...... ...++..+++.+++ +.+|+||
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~----~~aDvVI 83 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADT----ADSDVVV 83 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGG----TTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHh----CCCCEEE
Confidence 3589999999999999999999999 99999999 44443221 111000 00145555665443 3399999
Q ss_pred EEcCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 78 ILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 78 l~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
++...+. .++++.+.+..+ .++.+++..||-.
T Consensus 84 iaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vlvvsNPv 130 (315)
T 3tl2_A 84 ITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIVVLTNPV 130 (315)
T ss_dssp ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSH
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEECCChH
Confidence 9973321 233444555554 4677888888743
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=98.03 E-value=1.7e-05 Score=83.18 Aligned_cols=119 Identities=16% Similarity=0.153 Sum_probs=84.6
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhC--CCcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAGL----AVMGQNLALNVAEK--GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGl----G~MG~~lA~~La~~--G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
+||||||+ |.||..++..|.+. +++| .++|+++++.+.+.+..... .+..+.+++++++. ...|+|+++
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~---~~~~~~~~~~ll~~-~~vD~V~i~ 96 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLS---NATAFPTLESFASS-STIDMIVIA 96 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCT---TCEEESSHHHHHHC-SSCSEEEEC
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCC---cceeeCCHHHHhcC-CCCCEEEEe
Confidence 58999999 99999999999987 6775 58999999988887653211 13478899999873 238999999
Q ss_pred cCCCchHHHHHHHHHhc--C-CCCcEEEec-CCCCchhHHHHHHHHHHCCCeEE
Q 010637 80 VKAGSPVDQTIAALSEH--M-SPGDCIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~--l-~~g~iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (505)
+|+....+.++..+... . +.-.++++- -+....+.+++.+..++.|+.+.
T Consensus 97 tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 150 (438)
T 3btv_A 97 IQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTI 150 (438)
T ss_dssp SCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEE
T ss_pred CCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEE
Confidence 99876555444443322 0 002577773 44556677778887777777654
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.5e-05 Score=84.47 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=72.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|+|||+|.||..+|+.+...|.+|.++|+++.+.+...+.+ +. ..++++++.. +|+|+.+++....+
T Consensus 275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~G-------a~-~~~l~e~l~~---aDvVi~atgt~~~i 343 (494)
T 3ce6_A 275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEG-------FD-VVTVEEAIGD---ADIVVTATGNKDII 343 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHGGG---CSEEEECSSSSCSB
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CE-EecHHHHHhC---CCEEEECCCCHHHH
Confidence 5799999999999999999999999999999999877665543 33 3477777766 99999999775433
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
. .+..+.+++|.+|++.+....
T Consensus 344 ~---~~~l~~mk~ggilvnvG~~~~ 365 (494)
T 3ce6_A 344 M---LEHIKAMKDHAILGNIGHFDN 365 (494)
T ss_dssp C---HHHHHHSCTTCEEEECSSSGG
T ss_pred H---HHHHHhcCCCcEEEEeCCCCC
Confidence 2 245566889999999988653
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.5e-05 Score=80.96 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=81.6
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHhCC---------CcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCC
Q 010637 4 SALSRIGLAGLAVMGQNLALNVAEKG---------FPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 4 ~~~~~IgIIGlG~MG~~lA~~La~~G---------~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~a 73 (505)
+.+.||||||+|.||...+..|.+.+ .+| .++|+++++++++.++... ...++|++++++. ...
T Consensus 24 s~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~-----~~~y~d~~~ll~~-~~v 97 (412)
T 4gqa_A 24 SARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGA-----EKAYGDWRELVND-PQV 97 (412)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTC-----SEEESSHHHHHHC-TTC
T ss_pred cccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCC-----CeEECCHHHHhcC-CCC
Confidence 33468999999999999998887643 344 4889999999998876532 2578999999875 347
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEE
Q 010637 74 RSVIILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (505)
|+|++++|+....+-++..|. .|+ +++.- -+....+.+++.+..++.|..+.
T Consensus 98 D~V~I~tp~~~H~~~~~~al~----aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 151 (412)
T 4gqa_A 98 DVVDITSPNHLHYTMAMAAIA----AGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTM 151 (412)
T ss_dssp CEEEECSCGGGHHHHHHHHHH----TTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred CEEEECCCcHHHHHHHHHHHH----cCCCeEeecCCcCCHHHHHHHHHHHHHhCCeee
Confidence 999999999876665554443 344 44542 12344566777777777776543
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=98.02 E-value=2.4e-05 Score=79.73 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=77.6
Q ss_pred CCcCCCCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010637 1 MEASALSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~-lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
|+|. ++||||||+|.||.. .+..|.+. +++|. ++|+++++. .+... +...+++++++++. ...|+|+
T Consensus 1 M~m~-~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~---~~~~~-----~~~~~~~~~~ll~~-~~vD~V~ 70 (358)
T 3gdo_A 1 MSLD-TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEV---KRDFP-----DAEVVHELEEITND-PAIELVI 70 (358)
T ss_dssp -CTT-CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHH---HHHCT-----TSEEESSTHHHHTC-TTCCEEE
T ss_pred CCCC-cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH---HhhCC-----CCceECCHHHHhcC-CCCCEEE
Confidence 5443 368999999999997 67777665 67764 889998763 22211 35678999999873 2389999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCc-EEEecC-CCCchhHHHHHHHHHHCCCeEE
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i 129 (505)
+|+|+....+.+...+ ..|+ ++++-- +....+.+++.+..++.|+.+.
T Consensus 71 i~tp~~~H~~~~~~al----~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~ 120 (358)
T 3gdo_A 71 VTTPSGLHYEHTMACI----QAGKHVVMEKPMTATAEEGETLKRAADEKGVLLS 120 (358)
T ss_dssp ECSCTTTHHHHHHHHH----HTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred EcCCcHHHHHHHHHHH----HcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 9999986655444333 3444 555432 3445677777777777776553
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.7e-06 Score=82.50 Aligned_cols=117 Identities=21% Similarity=0.139 Sum_probs=76.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|.|+|+|.||.+++..|++.|.+|+++||++++.+++.+.....+ .+.. .+++++.+ ..+|+||.++|.+..
T Consensus 119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~--~~~~-~~~~~~~~--~~~DivIn~t~~~~~ 193 (272)
T 1p77_A 119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG--NIQA-VSMDSIPL--QTYDLVINATSAGLS 193 (272)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS--CEEE-EEGGGCCC--SCCSEEEECCCC---
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccC--CeEE-eeHHHhcc--CCCCEEEECCCCCCC
Confidence 357999999999999999999999999999999999888876532110 1222 23333221 249999999998743
Q ss_pred HHHHHHHHH-hcCCCCcEEEecCCCCchhHHHHHHHHHHCCCe-EEe
Q 010637 86 VDQTIAALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL-YLG 130 (505)
Q Consensus 86 v~~vl~~l~-~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~-~i~ 130 (505)
. .+. .+. ..+.++.+++|.+.....+|. +.+..+++|.. +++
T Consensus 194 ~-~~~-~i~~~~l~~~~~v~D~~y~p~~~t~-ll~~a~~~G~~~~v~ 237 (272)
T 1p77_A 194 G-GTA-SVDAEILKLGSAFYDMQYAKGTDTP-FIALCKSLGLTNVSD 237 (272)
T ss_dssp ------CCCHHHHHHCSCEEESCCCTTSCCH-HHHHHHHTTCCCEEC
T ss_pred C-CCC-CCCHHHcCCCCEEEEeeCCCCcCCH-HHHHHHHcCCCEeeC
Confidence 1 210 010 123467899999886443254 45566777876 654
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.7e-05 Score=77.28 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=67.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHH----HHHhhcccC-CCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDE----TLDRAHREG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~----l~~~~~~~g-~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
++||+|||+|.||.++|..|+.+|+ +|.++|+++++++. +.......+ ..++..+++. +.++. +|+||++
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~---aDiVIia 82 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEG---ADVVIVT 82 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCC---CCEEEEc
Confidence 4689999999999999999999999 99999999987642 222110000 0145555666 33444 9999999
Q ss_pred cCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
...+. .++++...+..+- ++.+++..||-..
T Consensus 83 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPvd 128 (324)
T 3gvi_A 83 AGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPLD 128 (324)
T ss_dssp CSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHH
T ss_pred cCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCcH
Confidence 74321 2334445555554 7788888887443
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.97 E-value=2.9e-05 Score=75.98 Aligned_cols=112 Identities=18% Similarity=0.168 Sum_probs=76.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++.|+|+|.||.+++..|++.|.+|+++||++++.+++.+.....+ .+.. .+.+++.+ ..+|+||.++|.+..
T Consensus 120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~--~~~~-~~~~~~~~--~~~DivVn~t~~~~~- 193 (271)
T 1nyt_A 120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG--SIQA-LSMDELEG--HEFDLIINATSSGIS- 193 (271)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS--SEEE-CCSGGGTT--CCCSEEEECCSCGGG-
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccC--CeeE-ecHHHhcc--CCCCEEEECCCCCCC-
Confidence 57999999999999999999999999999999999888876532110 1222 23333331 359999999987643
Q ss_pred HHHHHHHH-hcCCCCcEEEecCCCCchhHHHHHHHHHHCCCe
Q 010637 87 DQTIAALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 87 ~~vl~~l~-~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
..+ ..+- ..+.++.+++|.+.. |..|. +.+..+++|..
T Consensus 194 ~~~-~~i~~~~l~~~~~v~D~~y~-p~~t~-~~~~a~~~G~~ 232 (271)
T 1nyt_A 194 GDI-PAIPSSLIHPGIYCYDMFYQ-KGKTP-FLAWCEQRGSK 232 (271)
T ss_dssp TCC-CCCCGGGCCTTCEEEESCCC-SSCCH-HHHHHHHTTCC
T ss_pred CCC-CCCCHHHcCCCCEEEEeccC-CcCCH-HHHHHHHcCCC
Confidence 111 0011 235688999999886 44443 44556677765
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.97 E-value=4.4e-05 Score=77.83 Aligned_cols=112 Identities=10% Similarity=0.092 Sum_probs=79.4
Q ss_pred CcEEEEcccHHHH-HHHHHHHhCCCcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQ-NLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~-~lA~~La~~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.||||||+|.+|. .++..+...+++| .++|+++++.+++.+... ....+++++++++. ...|+|++++|+..
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~-----~~~~~~~~~~ll~~-~~vD~V~I~tp~~~ 100 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYA-----DARRIATAEEILED-ENIGLIVSAAVSSE 100 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSS-----SCCEESCHHHHHTC-TTCCEEEECCCHHH
T ss_pred cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcC-----CCcccCCHHHHhcC-CCCCEEEEeCChHH
Confidence 5899999999995 5777777788885 488999999998887642 14578999999874 34799999999875
Q ss_pred hHHHHHHHHHhcCCCCc-EEEecC-CCCchhHHHHHHHHHHCCCeE
Q 010637 85 PVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~ 128 (505)
..+.+...+ ..|+ ++++-= +....+.+++.+..++.|+.+
T Consensus 101 H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l 142 (361)
T 3u3x_A 101 RAELAIRAM----QHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIF 142 (361)
T ss_dssp HHHHHHHHH----HTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHH----HCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 544443333 3444 555532 334566777777777766644
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=4.7e-05 Score=79.90 Aligned_cols=119 Identities=14% Similarity=0.169 Sum_probs=81.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChHHHHHHHHhhcccCCCCeeeeC----CHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHY----TPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~----s~~e~v~~l~~advIil~ 79 (505)
++||||||+|.||...+..|.+. |++| .++|+++++.+++.+.....|......++ +++++++. ...|+|+++
T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~-~~vD~V~i~ 98 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKD-KNIDAVFVS 98 (444)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTC-TTCCEEEEC
T ss_pred CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcC-CCCCEEEEc
Confidence 35899999999999999999875 6775 58999999988876532110000135667 99998873 237999999
Q ss_pred cCCCchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEE
Q 010637 80 VKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (505)
+|+....+.++..+ ..|+ ++++- -+....+.+++.+..++.|..+.
T Consensus 99 tp~~~h~~~~~~al----~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~ 146 (444)
T 2ixa_A 99 SPWEWHHEHGVAAM----KAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLM 146 (444)
T ss_dssp CCGGGHHHHHHHHH----HTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEE
T ss_pred CCcHHHHHHHHHHH----HCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 99976655444433 3455 55553 23445667777777777776553
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.96 E-value=4.9e-05 Score=80.23 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=53.8
Q ss_pred CCcEEEEcccHH--HHHHHHHHHhC----CCcEEEEeCChHHHHHHHHhhc----ccC-CCCeeeeCCHHHHHhhcCCCc
Q 010637 6 LSRIGLAGLAVM--GQNLALNVAEK----GFPISVYNRTTSKVDETLDRAH----REG-QLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 6 ~~~IgIIGlG~M--G~~lA~~La~~----G~~V~v~dr~~~~~~~l~~~~~----~~g-~~~i~~~~s~~e~v~~l~~ad 74 (505)
++||+|||+|.| |.++|..|+.. |++|.+||+++++++....... ..+ ..+++.++++++.++. ||
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~d---AD 79 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID---AD 79 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---CS
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCC---CC
Confidence 469999999997 56667788754 8999999999988765432211 000 0146777888776666 99
Q ss_pred EEEEEcCC
Q 010637 75 SVIILVKA 82 (505)
Q Consensus 75 vIil~vp~ 82 (505)
+||+++|.
T Consensus 80 ~VIiaagv 87 (480)
T 1obb_A 80 FVINTAMV 87 (480)
T ss_dssp EEEECCCT
T ss_pred EEEECCCc
Confidence 99999975
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.96 E-value=3.6e-05 Score=81.16 Aligned_cols=109 Identities=13% Similarity=0.191 Sum_probs=73.9
Q ss_pred CcEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChHHHHHHHHhhc----ccC-CCCeeeeCCHHHHHhhcCCCcE
Q 010637 7 SRIGLAGLAVM-GQNLALNVAEK-----GFPISVYNRTTSKVDETLDRAH----REG-QLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgIIGlG~M-G~~lA~~La~~-----G~~V~v~dr~~~~~~~l~~~~~----~~g-~~~i~~~~s~~e~v~~l~~adv 75 (505)
+||+|||+|.+ |.++|..|+.+ +++|.+||+++++++...+... ..+ ..++..++++++.++. +|+
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~---AD~ 105 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD---VDF 105 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS---CSE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcC---CCE
Confidence 48999999998 66788888887 6789999999988765432110 000 0146667788777766 999
Q ss_pred EEEEcCCCc-----------------------------------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHH
Q 010637 76 VIILVKAGS-----------------------------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH 119 (505)
Q Consensus 76 Iil~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~ 119 (505)
||+++|.+. .+.++++.+.++ .|+.++|..||-....|....+
T Consensus 106 VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~-~P~A~ii~~TNPvdi~T~~~~k 183 (472)
T 1u8x_X 106 VMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY-SPDAWMLNYSNPAAIVAEATRR 183 (472)
T ss_dssp EEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSCHHHHHHHHHH
T ss_pred EEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeCCcHHHHHHHHHH
Confidence 999998842 133444555554 4778888888865444443333
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.95 E-value=2.7e-05 Score=78.97 Aligned_cols=115 Identities=10% Similarity=0.149 Sum_probs=76.6
Q ss_pred CCCcEEEEcccHHHH-HHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 5 ALSRIGLAGLAVMGQ-NLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~-~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|++||||||+|.||. ..+..+.+. +++|. ++|++ +.+++.+..... ++..+.+++++++. ...|+|++++|
T Consensus 1 M~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~---~~~~~~~~~~ll~~-~~~D~V~i~tp 74 (349)
T 3i23_A 1 MTVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKEK---GVNFTADLNELLTD-PEIELITICTP 74 (349)
T ss_dssp CCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHTT---TCEEESCTHHHHSC-TTCCEEEECSC
T ss_pred CeeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCCC---CCeEECCHHHHhcC-CCCCEEEEeCC
Confidence 356999999999998 456666654 67765 88988 444554432111 36788999999874 34799999999
Q ss_pred CCchHHHHHHHHHhcCCCCc-EEEecC-CCCchhHHHHHHHHHHCCCeEE
Q 010637 82 AGSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i 129 (505)
+....+.+...+ ..|+ ++++-- +....+.+++.+..+++|+.+.
T Consensus 75 ~~~h~~~~~~al----~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 120 (349)
T 3i23_A 75 AHTHYDLAKQAI----LAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVM 120 (349)
T ss_dssp GGGHHHHHHHHH----HTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred cHHHHHHHHHHH----HcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 976655444333 3444 555432 3445667777777777777654
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.95 E-value=7.7e-05 Score=66.11 Aligned_cols=114 Identities=12% Similarity=0.175 Sum_probs=70.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC-hHHHHHHHHhhcccCCCCee-ee-CCHHHHHh-hcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRT-TSKVDETLDRAHREGQLPLT-GH-YTPRDFVL-SIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~-~~~~~~l~~~~~~~g~~~i~-~~-~s~~e~v~-~l~~advIil~vp~ 82 (505)
.+|.|+|+|.+|..++..|.+.|++|.++|++ +++.+.+...... | ..+. .. .+.+.+.+ .++.+|.||+++++
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~-~-~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 81 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD-N-ADVIPGDSNDSSVLKKAGIDRCRAILALSDN 81 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT-T-CEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcC-C-CeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence 47999999999999999999999999999998 4655555432110 0 0111 11 23333332 36679999999988
Q ss_pred CchHHHHHHHHHhcC-CCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 83 GSPVDQTIAALSEHM-SPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l-~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
+ .....+..+...+ +...+|+...+.. .. +.+...|+..+
T Consensus 82 d-~~n~~~~~~a~~~~~~~~ii~~~~~~~--~~----~~l~~~G~~~v 122 (153)
T 1id1_A 82 D-ADNAFVVLSAKDMSSDVKTVLAVSDSK--NL----NKIKMVHPDII 122 (153)
T ss_dssp H-HHHHHHHHHHHHHTSSSCEEEECSSGG--GH----HHHHTTCCSEE
T ss_pred h-HHHHHHHHHHHHHCCCCEEEEEECCHH--HH----HHHHHcCCCEE
Confidence 6 3444444444444 4456776665532 22 23445576544
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=5.1e-05 Score=76.13 Aligned_cols=103 Identities=11% Similarity=0.087 Sum_probs=65.3
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhccc--CCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 4 SALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE--GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 4 ~~~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~--g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.+.+||+|||+|.+|.+++..|+..+. +|.++|+++++++......... -..++++..+..+..+ .+|+||++
T Consensus 3 ~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~---~aDvVii~ 79 (318)
T 1ez4_A 3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCK---DADLVVIT 79 (318)
T ss_dssp TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGT---TCSEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhC---CCCEEEEC
Confidence 344799999999999999999998886 8999999998876433211100 0002233323333333 49999999
Q ss_pred cCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.+.+. .++++.+.+..+ .++.+|+..||-.
T Consensus 80 ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv 124 (318)
T 1ez4_A 80 AGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPV 124 (318)
T ss_dssp CCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCcH
Confidence 85532 233444555555 4677777776643
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.93 E-value=6.7e-05 Score=75.32 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=65.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc----cC-CCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR----EG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~----~g-~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
++||+|||+|.||.++|..|+..|+ +|.++|+++++++.......+ .+ ..++..+.+.+ .++ .+|+||++
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~-a~~---~aDvVIi~ 80 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYK-DLE---NSDVVIVT 80 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGT---TCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHH-HHC---CCCEEEEc
Confidence 4689999999999999999999998 999999999876532211100 00 01355455653 333 39999999
Q ss_pred cCCC----c-----------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 80 VKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
...+ . .+++++..+..+. ++.+++..||-.
T Consensus 81 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPv 125 (321)
T 3p7m_A 81 AGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPL 125 (321)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred CCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCch
Confidence 7432 1 2334445555554 677777777643
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.3e-05 Score=82.40 Aligned_cols=94 Identities=20% Similarity=0.209 Sum_probs=67.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCe-ee---eCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TG---HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~---~~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|+|||+|.+|..+++.+...|.+|.++|+++++.+.+.+.... .+ .. ..++++++.. +|+||.+++.
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~----~~~~~~~~~~~l~~~l~~---aDvVi~~~~~ 241 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCG----RIHTRYSSAYELEGAVKR---ADLVIGAVLV 241 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT----SSEEEECCHHHHHHHHHH---CSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCC----eeEeccCCHHHHHHHHcC---CCEEEECCCc
Confidence 579999999999999999999999999999999988777653211 11 11 1234455555 9999998854
Q ss_pred Cch-HHHH-HHHHHhcCCCCcEEEecC
Q 010637 83 GSP-VDQT-IAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 83 ~~~-v~~v-l~~l~~~l~~g~iIId~s 107 (505)
+.. ...+ .++..+.+++|.+|||.+
T Consensus 242 p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 242 PGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp TTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 321 1111 245566788999999987
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.93 E-value=5.7e-06 Score=81.15 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=78.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||+|.||++++..|++.|. +|+++||++++.+++.+... .....++. +..+|+||.++|.+..
T Consensus 120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~------~~~~~~~~-----~~~~DivInaTp~gm~ 188 (271)
T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG------YAYINSLE-----NQQADILVNVTSIGMK 188 (271)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT------CEEESCCT-----TCCCSEEEECSSTTCT
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC------Cccchhhh-----cccCCEEEECCCCCcc
Confidence 579999999999999999999997 89999999999988876531 12222222 2349999999998752
Q ss_pred HH---HH--HHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 86 VD---QT--IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 86 v~---~v--l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
.. +. +. ...+.++.+++|.... |..| .+.+..+++|..+++.
T Consensus 189 ~~~~~~~~~~~--~~~l~~~~~v~DlvY~-P~~T-~ll~~A~~~G~~~i~G 235 (271)
T 1npy_A 189 GGKEEMDLAFP--KAFIDNASVAFDVVAM-PVET-PFIRYAQARGKQTISG 235 (271)
T ss_dssp TSTTTTSCSSC--HHHHHHCSEEEECCCS-SSSC-HHHHHHHHTTCEEECH
T ss_pred CccccCCCCCC--HHHcCCCCEEEEeecC-CCCC-HHHHHHHHCCCEEECC
Confidence 11 00 10 0123467899999864 4555 6667777888887653
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.93 E-value=6.8e-05 Score=78.00 Aligned_cols=116 Identities=12% Similarity=0.156 Sum_probs=80.8
Q ss_pred CcEEEEcccH---HHHHHHHHHHhCC-CcEE--EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhc----CCCcEE
Q 010637 7 SRIGLAGLAV---MGQNLALNVAEKG-FPIS--VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSI----QRPRSV 76 (505)
Q Consensus 7 ~~IgIIGlG~---MG~~lA~~La~~G-~~V~--v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l----~~advI 76 (505)
+||||||+|. ||...+..+...+ ++|. ++|+++++.+++.++.... ....+++++++++.- ...|+|
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~---~~~~~~~~~~ll~~~~~~~~~vD~V 114 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLD---PSRVYSDFKEMAIREAKLKNGIEAV 114 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCC---GGGBCSCHHHHHHHHHHCTTCCSEE
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCC---cccccCCHHHHHhcccccCCCCcEE
Confidence 4799999999 9999998888776 6764 6799999998887754210 014678999998741 348999
Q ss_pred EEEcCCCchHHHHHHHHHhcCCCCc-EEEecC-CCCchhHHHHHHHHHHCCCeEE
Q 010637 77 IILVKAGSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i 129 (505)
++++|+....+-+... +..|+ ++++-- +....+.+++.+..++.|+.+.
T Consensus 115 ~I~tp~~~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 165 (417)
T 3v5n_A 115 AIVTPNHVHYAAAKEF----LKRGIHVICDKPLTSTLADAKKLKKAADESDALFV 165 (417)
T ss_dssp EECSCTTSHHHHHHHH----HTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEE
T ss_pred EECCCcHHHHHHHHHH----HhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 9999998665444333 34454 555532 3455677777777777777553
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4.5e-05 Score=79.28 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=75.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~ 83 (505)
.++|-|+|+|.+|..++..|.+.|++|+++|+++++++.+.+.+.. -+.+..+-.++.. .+.++|+||++++++
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~----vi~GDat~~~~L~~agi~~A~~viv~~~~~ 79 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMK----VFYGDATRMDLLESAGAAKAEVLINAIDDP 79 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCC----CEESCTTCHHHHHHTTTTTCSEEEECCSSH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCe----EEEcCCCCHHHHHhcCCCccCEEEECCCCh
Confidence 4689999999999999999999999999999999999988765432 1222223334443 356799999999986
Q ss_pred chHHHHHHHHHhcCCCC-cEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 84 SPVDQTIAALSEHMSPG-DCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g-~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
.....++.. ...+.+. .||+-..+. .....+...|+..+
T Consensus 80 ~~n~~i~~~-ar~~~p~~~Iiara~~~------~~~~~L~~~Gad~V 119 (413)
T 3l9w_A 80 QTNLQLTEM-VKEHFPHLQIIARARDV------DHYIRLRQAGVEKP 119 (413)
T ss_dssp HHHHHHHHH-HHHHCTTCEEEEEESSH------HHHHHHHHTTCSSC
T ss_pred HHHHHHHHH-HHHhCCCCeEEEEECCH------HHHHHHHHCCCCEE
Confidence 444333333 3334454 455544331 23344556676554
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.6e-05 Score=79.54 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=77.7
Q ss_pred CCcCCCCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010637 1 MEASALSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~-lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
|+|. ++||||||+|.||.. .+..|.+. +++|. ++|+++++. .+... ....+++++++++. ...|+|+
T Consensus 1 M~~~-~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~---~~~~~-----~~~~~~~~~~ll~~-~~vD~V~ 70 (362)
T 3fhl_A 1 MSLE-IIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELS---KERYP-----QASIVRSFKELTED-PEIDLIV 70 (362)
T ss_dssp --CC-CEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGG---GTTCT-----TSEEESCSHHHHTC-TTCCEEE
T ss_pred CCCC-ceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH---HHhCC-----CCceECCHHHHhcC-CCCCEEE
Confidence 5543 358999999999997 67777765 67765 889998762 22211 35778999999874 3479999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCc-EEEecC-CCCchhHHHHHHHHHHCCCeEE
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i 129 (505)
+|+|+....+.+...+ ..|+ ++++-- +....+.+++.+..++.|+.+.
T Consensus 71 i~tp~~~H~~~~~~al----~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 120 (362)
T 3fhl_A 71 VNTPDNTHYEYAGMAL----EAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLS 120 (362)
T ss_dssp ECSCGGGHHHHHHHHH----HTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred EeCChHHHHHHHHHHH----HCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 9999976655444333 3344 555532 3455677777777777776554
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=5.3e-05 Score=76.21 Aligned_cols=99 Identities=13% Similarity=0.166 Sum_probs=65.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHH----HHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDE----TLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~----l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.+||+|||+|.||.++|..|+..|+ +|.++|+++++++. +.......+ .++....+..+.++ .+|+||++
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~-~~v~i~~~~~~a~~---~aDvVvi~ 80 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAP-QPVKTSYGTYEDCK---DADIVCIC 80 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSS-SCCEEEEECGGGGT---TCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhcccccc-CCeEEEeCcHHHhC---CCCEEEEe
Confidence 4699999999999999999999997 89999999988765 332211100 02333333233333 49999999
Q ss_pred cCCC----c-----------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 80 VKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+..+ . .++++.+.+..+ .++.+|+..||-
T Consensus 81 ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvtNP 124 (326)
T 3pqe_A 81 AGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATNP 124 (326)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred cccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcCCh
Confidence 8432 1 123333455554 467788888874
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.1e-05 Score=82.83 Aligned_cols=114 Identities=12% Similarity=0.132 Sum_probs=76.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
..||||||+| +|...+..+.+. ++++. ++|+++++.+++.++. ++..++|++++.+. .|++++++|+
T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~------gv~~~~~~~~l~~~---~D~v~i~~p~ 76 (372)
T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAF------GIPLYTSPEQITGM---PDIACIVVRS 76 (372)
T ss_dssp CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHT------TCCEESSGGGCCSC---CSEEEECCC-
T ss_pred CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHh------CCCEECCHHHHhcC---CCEEEEECCC
Confidence 4589999999 899888888765 56765 7899999999988764 46778999998876 9999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
......-.+-....|..|+-|+--=-....+.+++.+..+++|+.|.
T Consensus 77 ~~h~~~~~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g~~~~ 123 (372)
T 4gmf_A 77 TVAGGAGTQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQGCCYW 123 (372)
T ss_dssp -CTTSHHHHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHTCCEE
T ss_pred cccchhHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHcCCEEE
Confidence 64421111111222334543333222345667777777777787664
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.88 E-value=4e-05 Score=79.49 Aligned_cols=90 Identities=13% Similarity=0.010 Sum_probs=70.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|+|||+|.+|+.+|+.+...|.+|.++|+++.+..+....+ +. ..++++++.. +|+|+.+....
T Consensus 248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G-------~~-vv~LeElL~~---ADIVv~atgt~--- 313 (464)
T 3n58_A 248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDG-------FE-VVTLDDAAST---ADIVVTTTGNK--- 313 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT-------CE-ECCHHHHGGG---CSEEEECCSSS---
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcC-------ce-eccHHHHHhh---CCEEEECCCCc---
Confidence 5799999999999999999999999999999987654433332 33 3478888887 99999876543
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCc
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~ 111 (505)
.++ .+.+..+++|.+||+++....
T Consensus 314 -~lI~~e~l~~MK~GAILINvGRgdv 338 (464)
T 3n58_A 314 -DVITIDHMRKMKDMCIVGNIGHFDN 338 (464)
T ss_dssp -SSBCHHHHHHSCTTEEEEECSSSTT
T ss_pred -cccCHHHHhcCCCCeEEEEcCCCCc
Confidence 233 455667899999999988653
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=5.9e-05 Score=75.80 Aligned_cols=100 Identities=14% Similarity=0.081 Sum_probs=69.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHH----hhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLD----RAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~----~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.+||+|||+|.||.++|..|+.+|+ +|.++|+++++++.... ........++..+.++++ . +.+|+||++
T Consensus 21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~---~daDiVIit 96 (330)
T 3ldh_A 21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-S---AGSKLVVIT 96 (330)
T ss_dssp CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-C---SSCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-h---CCCCEEEEe
Confidence 4689999999999999999999997 89999999987654321 111000013556667765 3 349999998
Q ss_pred cCCC---------------chHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
...+ ..++++...+.++ .++.+++..||-.
T Consensus 97 aG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvtNPv 141 (330)
T 3ldh_A 97 AGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHPELG 141 (330)
T ss_dssp CSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCCCcc
Confidence 6432 1244555677776 6788888888743
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=4e-05 Score=75.80 Aligned_cols=114 Identities=18% Similarity=0.106 Sum_probs=77.1
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+||+|+|+ |.||..++++|.+.|++ .++..++.+.. ++ . .++..+.|++|+.+. ..+|++++++|+.
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~g---~~--~---~G~~vy~sl~el~~~-~~~D~viI~tP~~- 75 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKGG---TT--H---LGLPVFNTVREAVAA-TGATASVIYVPAP- 75 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CE--E---TTEEEESSHHHHHHH-HCCCEEEECCCGG-
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCccc---ce--e---CCeeccCCHHHHhhc-CCCCEEEEecCHH-
Confidence 468999998 99999999999998998 44555554210 01 1 147788999999871 1299999999996
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCC-chhHHHHHHHHHHCCCeEEeCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~-~~~t~~~~~~l~~~gi~~i~~p 132 (505)
.+.+++.+.... .. ..++..+... ..+.+++.+..++.|+.+++.-
T Consensus 76 ~~~~~~~ea~~~-Gi-~~iVi~t~G~~~~~~~~l~~~A~~~gv~liGPN 122 (288)
T 2nu8_A 76 FCKDSILEAIDA-GI-KLIITITEGIPTLDMLTVKVKLDEAGVRMIGPN 122 (288)
T ss_dssp GHHHHHHHHHHT-TC-SEEEECCCCCCHHHHHHHHHHHHHHTCEEECSS
T ss_pred HHHHHHHHHHHC-CC-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEecC
Confidence 556666655542 12 3334345444 3345567777778899887543
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.87 E-value=7.3e-05 Score=74.65 Aligned_cols=97 Identities=13% Similarity=0.185 Sum_probs=66.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-----cCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-----EGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-----~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
||+|||+|.||.++|..|+..|+ +|.++|+++++++........ ....+++.+.+.++ ++ .+|+||++.+
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a-~~---~aD~Vi~~ag 76 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSYED-MR---GSDIVLVTAG 76 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGGG-GT---TCSEEEECCS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCHHH-hC---CCCEEEEeCC
Confidence 69999999999999999998888 699999998876543221100 00014565566643 33 3999999975
Q ss_pred CCc---------------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 82 AGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 82 ~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.+. .++++++.+.++. ++.++|..||-
T Consensus 77 ~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP 118 (308)
T 2d4a_B 77 IGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTNP 118 (308)
T ss_dssp CCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence 542 1555666776664 66677777773
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=3.9e-05 Score=79.32 Aligned_cols=90 Identities=9% Similarity=0.058 Sum_probs=69.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|+|+|.+|..+|..|...|.+|.++|+++.+.......+ +. ..++++++.. +|+|++|...
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G-------~~-v~~Leeal~~---ADIVi~atgt---- 285 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDG-------FR-LVKLNEVIRQ---VDIVITCTGN---- 285 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHTTT---CSEEEECSSC----
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcC-------CE-eccHHHHHhc---CCEEEECCCC----
Confidence 5799999999999999999999999999999997655444332 22 3578888776 9999996322
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCc
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~ 111 (505)
..++ .+....+++|.+||+++....
T Consensus 286 ~~lI~~e~l~~MK~gailINvgrg~~ 311 (435)
T 3gvp_A 286 KNVVTREHLDRMKNSCIVCNMGHSNT 311 (435)
T ss_dssp SCSBCHHHHHHSCTTEEEEECSSTTT
T ss_pred cccCCHHHHHhcCCCcEEEEecCCCc
Confidence 2234 355667889999999988754
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00014 Score=74.18 Aligned_cols=112 Identities=18% Similarity=0.155 Sum_probs=77.0
Q ss_pred cEEEEcccHHHHHHHHHHHhC--------CCcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 8 RIGLAGLAVMGQNLALNVAEK--------GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~--------G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
||||||+|.||...+..+... +.+| .++|+++++.+++.++... ...++|++++++. ...|+|++
T Consensus 27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~-----~~~y~d~~ell~~-~~iDaV~I 100 (393)
T 4fb5_A 27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGF-----EKATADWRALIAD-PEVDVVSV 100 (393)
T ss_dssp EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTC-----SEEESCHHHHHHC-TTCCEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCC-----CeecCCHHHHhcC-CCCcEEEE
Confidence 799999999999887776532 4454 5889999999998876532 2578999999875 34799999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEE
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (505)
++|+....+.++..|. .|+ +++.- -+....+.+++.+..++.|+.+.
T Consensus 101 atP~~~H~~~a~~al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~ 149 (393)
T 4fb5_A 101 TTPNQFHAEMAIAALE----AGKHVWCEKPMAPAYADAERMLATAERSGKVAA 149 (393)
T ss_dssp CSCGGGHHHHHHHHHH----TTCEEEECSCSCSSHHHHHHHHHHHHHSSSCEE
T ss_pred CCChHHHHHHHHHHHh----cCCeEEEccCCcccHHHHHHhhhhHHhcCCccc
Confidence 9999877665555443 343 45542 12334567777777777776543
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=3.2e-05 Score=80.16 Aligned_cols=96 Identities=21% Similarity=0.199 Sum_probs=66.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+|+|||+|.||..++..|...|. +|+++||++++.+++.+.... ......++.+.+.. +|+||.++|.+.
T Consensus 167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~l~~~l~~---aDvVi~at~~~~ 239 (404)
T 1gpj_A 167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG----EAVRFDELVDHLAR---SDVVVSATAAPH 239 (404)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC----EECCGGGHHHHHHT---CSEEEECCSSSS
T ss_pred CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----ceecHHhHHHHhcC---CCEEEEccCCCC
Confidence 3579999999999999999999998 899999999988666654211 11112455566555 999999998765
Q ss_pred hHH--HHHHH-HHh-cCCCCcEEEecCC
Q 010637 85 PVD--QTIAA-LSE-HMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~--~vl~~-l~~-~l~~g~iIId~st 108 (505)
.+. ..+.. +++ .-.++.+++|.+.
T Consensus 240 ~~~~~~~l~~~~lk~r~~~~~v~vdia~ 267 (404)
T 1gpj_A 240 PVIHVDDVREALRKRDRRSPILIIDIAN 267 (404)
T ss_dssp CCBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred ceecHHHHHHHHHhccCCCCEEEEEccC
Confidence 432 33333 221 1134567777763
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.1e-05 Score=79.32 Aligned_cols=95 Identities=14% Similarity=0.093 Sum_probs=66.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee-eC---CHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HY---TPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~---s~~e~v~~l~~advIil~vp~ 82 (505)
++|+|+|+|.+|..+++.+...|++|.++||++++.+.+.+.... .+.. .. ++++++.. +|+||.+++.
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~l~~~~~~---~DvVi~~~g~ 239 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGG----RVITLTATEANIKKSVQH---ADLLIGAVLV 239 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT----SEEEEECCHHHHHHHHHH---CSEEEECCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCc----eEEEecCCHHHHHHHHhC---CCEEEECCCC
Confidence 579999999999999999999999999999999988776553211 1111 12 33444554 9999999975
Q ss_pred Cc-hHHHH-HHHHHhcCCCCcEEEecCC
Q 010637 83 GS-PVDQT-IAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~-~v~~v-l~~l~~~l~~g~iIId~st 108 (505)
.. ....+ .....+.++++.+|||.+.
T Consensus 240 ~~~~~~~li~~~~l~~mk~gg~iV~v~~ 267 (369)
T 2eez_A 240 PGAKAPKLVTRDMLSLMKEGAVIVDVAV 267 (369)
T ss_dssp ------CCSCHHHHTTSCTTCEEEECC-
T ss_pred CccccchhHHHHHHHhhcCCCEEEEEec
Confidence 42 11111 2556677888999999884
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.5e-05 Score=74.26 Aligned_cols=86 Identities=17% Similarity=0.084 Sum_probs=61.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
|+||+|+|+|.||+.++..+.+.++++. ++|++++. .. ++..+++++++. . +|+||-+..+.
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~-------gv~v~~dl~~l~-~---~DVvIDft~p~- 65 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TT-------PYQQYQHIADVK-G---ADVAIDFSNPN- 65 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------C-------CSCBCSCTTTCT-T---CSEEEECSCHH-
T ss_pred ceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cC-------CCceeCCHHHHh-C---CCEEEEeCChH-
Confidence 4799999999999999999999877755 57988762 11 356778888876 4 99998555432
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchh
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLN 113 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~ 113 (505)
.+...+ . +..|.-+|.++|+....
T Consensus 66 a~~~~~----~-l~~g~~vVigTTG~s~e 89 (243)
T 3qy9_A 66 LLFPLL----D-EDFHLPLVVATTGEKEK 89 (243)
T ss_dssp HHHHHH----T-SCCCCCEEECCCSSHHH
T ss_pred HHHHHH----H-HhcCCceEeCCCCCCHH
Confidence 333333 2 67787777788876443
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=3.1e-05 Score=80.21 Aligned_cols=91 Identities=11% Similarity=0.130 Sum_probs=65.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeC-------------------------
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY------------------------- 61 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~------------------------- 61 (505)
.+|+|||+|.+|...++.+...|.+|+++|+++++.+.+.+.+. ....
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 245 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGA-------EFLELDFKEEAGSGDGYAKVMSDAFIKAE 245 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTC-------EECCC--------CCHHHHHHSHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCC-------EEEEecccccccccccchhhccHHHHHHH
Confidence 47999999999999999999999999999999998877655432 2111
Q ss_pred --CHHHHHhhcCCCcEEEEE--cCCCchHHHHH-HHHHhcCCCCcEEEecCC
Q 010637 62 --TPRDFVLSIQRPRSVIIL--VKAGSPVDQTI-AALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 62 --s~~e~v~~l~~advIil~--vp~~~~v~~vl-~~l~~~l~~g~iIId~st 108 (505)
++++++.. +|+||.+ +|.. ....++ ++.+..+++|.+|||.+.
T Consensus 246 ~~~l~e~~~~---aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~ 293 (401)
T 1x13_A 246 MELFAAQAKE---VDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAA 293 (401)
T ss_dssp HHHHHHHHHH---CSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTG
T ss_pred HHHHHHHhCC---CCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcC
Confidence 24455555 9999999 4421 111122 345566788999999885
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00014 Score=73.23 Aligned_cols=102 Identities=12% Similarity=0.073 Sum_probs=65.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhccc--CCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE--GQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~--g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
+.+||+|||+|.+|.+++..|+..+. +|.++|+++++++......... -..++.+..+..+..+. +|+||++.
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~---aDvVii~a 84 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKD---ADLVVITA 84 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGG---CSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCC---CCEEEEcC
Confidence 45799999999999999999998886 8999999998876533211100 00023333233344444 99999998
Q ss_pred CCCc---------------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.+. .++++.+.+..+ .++.+|+..||-.
T Consensus 85 g~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv 128 (326)
T 2zqz_A 85 GAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPV 128 (326)
T ss_dssp CCC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCcH
Confidence 6542 233344555555 4667777776643
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.79 E-value=8.9e-05 Score=74.14 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=63.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHH----HHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDET----LDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l----~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|||+|||+|.||.++|..|+..|+ +|.++|+++++++.. ....... ...++..+++.++ +.+ +|+||++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a-~~~---aDvVii~ 76 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGP-TED---SDVCIIT 76 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGG-GTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHH-hCC---CCEEEEC
Confidence 589999999999999999999887 899999999876532 2211000 0002333444433 333 9999999
Q ss_pred cCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.+.+. .++++.+.+..+ .|+.+++..||-.
T Consensus 77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNPv 121 (314)
T 3nep_X 77 AGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIVVANPL 121 (314)
T ss_dssp CCC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECCSSH
T ss_pred CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEecCCch
Confidence 75431 123333455554 5778888888744
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0001 Score=76.15 Aligned_cols=116 Identities=11% Similarity=-0.003 Sum_probs=81.5
Q ss_pred CcEEEEcccH---HHHHHHHHHHhCC-CcEE--EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhc----CCCcEE
Q 010637 7 SRIGLAGLAV---MGQNLALNVAEKG-FPIS--VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSI----QRPRSV 76 (505)
Q Consensus 7 ~~IgIIGlG~---MG~~lA~~La~~G-~~V~--v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l----~~advI 76 (505)
.||||||+|. ||...+..+...+ ++|. ++|+++++.+++.++.... ....++|++++++.- ...|+|
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~---~~~~~~~~~~ll~~~~~~~~~vD~V 89 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVD---SERCYADYLSMFEQEARRADGIQAV 89 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCC---GGGBCSSHHHHHHHHTTCTTCCSEE
T ss_pred ceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCC---cceeeCCHHHHHhcccccCCCCCEE
Confidence 4899999999 9999999888765 6765 6799999998887753210 015788999998742 248999
Q ss_pred EEEcCCCchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEE
Q 010637 77 IILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (505)
++++|+....+.+...+. .|+ ++++- -+....+.+++.+..+++|+.+.
T Consensus 90 ~i~tp~~~H~~~~~~al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 140 (398)
T 3dty_A 90 SIATPNGTHYSITKAALE----AGLHVVCEKPLCFTVEQAENLRELSHKHNRIVG 140 (398)
T ss_dssp EEESCGGGHHHHHHHHHH----TTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEE
T ss_pred EECCCcHHHHHHHHHHHH----CCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 999999866554443333 444 44442 13345677777777777777553
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00011 Score=77.54 Aligned_cols=116 Identities=10% Similarity=0.050 Sum_probs=79.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~ 82 (505)
+++|.|+|+|.+|..++..|++. |++|++++|++++++++.+.... .... ..+.+++.+.++.+|+||.++|.
T Consensus 23 ~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~----~~~~~D~~d~~~l~~~l~~~DvVIn~tp~ 98 (467)
T 2axq_A 23 GKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGS----KAISLDVTDDSALDKVLADNDVVISLIPY 98 (467)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTC----EEEECCTTCHHHHHHHHHTSSEEEECSCG
T ss_pred CCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCC----cEEEEecCCHHHHHHHHcCCCEEEECCch
Confidence 45799999999999999999998 78999999999998888764110 1111 12333333333349999999997
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
... ..+... .+.+|..++|.+...+ .+..+.+..++.|+.++.
T Consensus 99 ~~~-~~v~~a---~l~~g~~vvd~~~~~p-~~~~Ll~~Ak~aGv~~i~ 141 (467)
T 2axq_A 99 TFH-PNVVKS---AIRTKTDVVTSSYISP-ALRELEPEIVKAGITVMN 141 (467)
T ss_dssp GGH-HHHHHH---HHHHTCEEEECSCCCH-HHHHHHHHHHHHTCEEEC
T ss_pred hhh-HHHHHH---HHhcCCEEEEeecCCH-HHHHHHHHHHHcCCEEEe
Confidence 632 233322 2346788888765444 445666667777887664
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.76 E-value=3.9e-05 Score=75.19 Aligned_cols=111 Identities=14% Similarity=0.041 Sum_probs=77.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++.|+|+|.+|++++..|++.|. +|+++||++++.+++.+.... + ++.. .+.+++.. ..+|+||.++|.+..
T Consensus 121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~-~--~~~~-~~~~~l~~--~~~DivInaTp~gm~ 194 (272)
T 3pwz_A 121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH-S--RLRI-SRYEALEG--QSFDIVVNATSASLT 194 (272)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC-T--TEEE-ECSGGGTT--CCCSEEEECSSGGGG
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc-C--CeeE-eeHHHhcc--cCCCEEEECCCCCCC
Confidence 579999999999999999999996 999999999999988876421 1 1222 23344321 349999999998642
Q ss_pred HHH-HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCe
Q 010637 86 VDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 86 v~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
-+. .+. ...+.++.+|+|.... |..|. +.+..+++|+.
T Consensus 195 ~~~~~i~--~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~ 233 (272)
T 3pwz_A 195 ADLPPLP--ADVLGEAALAYELAYG-KGLTP-FLRLAREQGQA 233 (272)
T ss_dssp TCCCCCC--GGGGTTCSEEEESSCS-CCSCH-HHHHHHHHSCC
T ss_pred CCCCCCC--HHHhCcCCEEEEeecC-CCCCH-HHHHHHHCCCC
Confidence 110 010 1346789999999776 44453 55566677765
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00024 Score=74.62 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=77.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~----~~s~~e~v~~l~~advIil~vp~ 82 (505)
++|.|+|+|.||..++..|++.|++|.++||++++.+++.+... ++.. ..+.+++.+.++.+|+||.++|.
T Consensus 4 k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~-----~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~ 78 (450)
T 1ff9_A 4 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQ-----HSTPISLDVNDDAALDAEVAKHDLVISLIPY 78 (450)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCT-----TEEEEECCTTCHHHHHHHHTTSSEEEECCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcC-----CceEEEeecCCHHHHHHHHcCCcEEEECCcc
Confidence 57999999999999999999999999999999998877654321 1211 22344443334459999999987
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.... .+... .+.+|..++|.+...+ .+..+.+..++.|+.++.
T Consensus 79 ~~~~-~i~~a---~l~~g~~vvd~~~~~~-~~~~l~~aA~~aGv~~i~ 121 (450)
T 1ff9_A 79 TFHA-TVIKS---AIRQKKHVVTTSYVSP-AMMELDQAAKDAGITVMN 121 (450)
T ss_dssp -CHH-HHHHH---HHHHTCEEEESSCCCH-HHHHTHHHHHHTTCEEEC
T ss_pred ccch-HHHHH---HHhCCCeEEEeecccH-HHHHHHHHHHHCCCeEEe
Confidence 5432 23222 2345677888765444 455677777788887654
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00017 Score=72.00 Aligned_cols=98 Identities=12% Similarity=0.176 Sum_probs=63.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChHHHHHHHHhhcc----cCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHR----EGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~~~----~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+|.+|.+++..|+..+ .+|.++|+++++++........ ....+++. ++ .+. ++.+|+||++.
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~~-~~a---~~~aD~Vii~a 75 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-GS-YGD---LEGARAVVLAA 75 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-CC-GGG---GTTEEEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-CC-HHH---hCCCCEEEECC
Confidence 58999999999999999999887 5899999999877643322111 00012332 33 333 33499999988
Q ss_pred CCCc---------------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.+. .++++.+.+.++ .++.+|+..||-.
T Consensus 76 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv 119 (310)
T 2xxj_A 76 GVAQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPV 119 (310)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred CCCCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEecCch
Confidence 5442 133444555555 4667777776643
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.70 E-value=7.9e-05 Score=73.46 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=79.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccC-CCCeeeeC--CHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREG-QLPLTGHY--TPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g-~~~i~~~~--s~~e~v~~l~~advIil~vp~ 82 (505)
.++.|+|+|-+|++++..|++.|. +|+++||++++.+++.+.....+ ...+...+ ++.+.+.. +|+||-++|.
T Consensus 128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~---~DiVInaTp~ 204 (283)
T 3jyo_A 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAA---ADGVVNATPM 204 (283)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHH---SSEEEECSST
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhc---CCEEEECCCC
Confidence 479999999999999999999998 69999999999888765432110 01233443 67676666 9999999997
Q ss_pred CchHHH--HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 83 GSPVDQ--TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~--vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+..-.. .+. ...+.++.+|+|.--.. ..| .+.+..+++|...++
T Consensus 205 Gm~~~~~~pi~--~~~l~~~~~v~DlvY~P-~~T-~ll~~A~~~G~~~~~ 250 (283)
T 3jyo_A 205 GMPAHPGTAFD--VSCLTKDHWVGDVVYMP-IET-ELLKAARALGCETLD 250 (283)
T ss_dssp TSTTSCSCSSC--GGGCCTTCEEEECCCSS-SSC-HHHHHHHHHTCCEEC
T ss_pred CCCCCCCCCCC--HHHhCCCCEEEEecCCC-CCC-HHHHHHHHCcCeEeC
Confidence 632110 011 23577889999986543 333 334445566765443
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00016 Score=75.85 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=73.9
Q ss_pred CCcEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCCh--HHHHHHHH---hhc-ccC-CCCeeeeCCHHHHHhhcCC
Q 010637 6 LSRIGLAGLAVM-GQNLALNVAEK-----GFPISVYNRTT--SKVDETLD---RAH-REG-QLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgIIGlG~M-G~~lA~~La~~-----G~~V~v~dr~~--~~~~~l~~---~~~-~~g-~~~i~~~~s~~e~v~~l~~ 72 (505)
.+||+|||+|.+ |.+++..|+.+ +++|.+||+++ ++++.... ... ..+ ..+++.+.++.+.++.
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~g--- 83 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG--- 83 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCC---
Confidence 468999999999 88888888874 67899999999 87665321 110 000 1146667788777666
Q ss_pred CcEEEEEcCCCc-----------------------------------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHH
Q 010637 73 PRSVIILVKAGS-----------------------------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR 117 (505)
Q Consensus 73 advIil~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~ 117 (505)
+|+||++++.+. .+.++++.+..+ .|+.++|..||-....|...
T Consensus 84 AD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~-~P~a~ii~~tNPvdivT~a~ 162 (450)
T 1s6y_A 84 ADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTNPAGMVTEAV 162 (450)
T ss_dssp CSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHH
T ss_pred CCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeCCcHHHHHHHH
Confidence 999999998642 133444555554 47788888888654444433
Q ss_pred HH
Q 010637 118 IH 119 (505)
Q Consensus 118 ~~ 119 (505)
.+
T Consensus 163 ~k 164 (450)
T 1s6y_A 163 LR 164 (450)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0002 Score=73.34 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=78.5
Q ss_pred CCcEEEEc-ccHHHHH-HH----HHHHhCC-CcE----------EEEeCChHHHHHHHHhhcccCCCCe-eeeCCHHHHH
Q 010637 6 LSRIGLAG-LAVMGQN-LA----LNVAEKG-FPI----------SVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFV 67 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~-lA----~~La~~G-~~V----------~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~v 67 (505)
.+|||||| +|.||.. .+ ..+.+.+ ..+ .++|+++++.+.+.+... + ..++++++++
T Consensus 6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~------~~~~~~~~~~ll 79 (383)
T 3oqb_A 6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFN------IARWTTDLDAAL 79 (383)
T ss_dssp EEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTT------CCCEESCHHHHH
T ss_pred eeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhC------CCcccCCHHHHh
Confidence 35899999 9999998 66 6666554 222 499999999988877542 3 4678999998
Q ss_pred hhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEE-ec-CCCCchhHHHHHHHHHHCCCeEE
Q 010637 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCII-DG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iII-d~-st~~~~~t~~~~~~l~~~gi~~i 129 (505)
+. ...|+|++++|+....+-+... +..|+-|+ +- -.....+.+++.+..+++|+.+.
T Consensus 80 ~~-~~iD~V~i~tp~~~h~~~~~~a----l~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~~ 138 (383)
T 3oqb_A 80 AD-KNDTMFFDAATTQARPGLLTQA----INAGKHVYCEKPIATNFEEALEVVKLANSKGVKHG 138 (383)
T ss_dssp HC-SSCCEEEECSCSSSSHHHHHHH----HTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred cC-CCCCEEEECCCchHHHHHHHHH----HHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 75 3479999999997665444333 34555444 32 12345567777777777777543
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00028 Score=70.98 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=67.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhc----ccCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAH----REGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~----~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.+||+|||+|.||.++|..|+.+|+ +|.++|++.++++....... .....++..+.++++ ++ .+|+||++
T Consensus 19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~-~~---~aDiVvi~ 94 (331)
T 4aj2_A 19 QNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSV-TA---NSKLVIIT 94 (331)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGG-GT---TEEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHH-hC---CCCEEEEc
Confidence 4689999999999999999999997 89999999887665332111 000002444566654 33 39999998
Q ss_pred cCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
..... .++++.+.+..+ .++.+++..||-.
T Consensus 95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPv 139 (331)
T 4aj2_A 95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVSNPV 139 (331)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChH
Confidence 63221 234444566665 5778888888743
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00041 Score=70.12 Aligned_cols=98 Identities=15% Similarity=0.089 Sum_probs=65.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCC--CcEEEEeCChHHHHH----HHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKG--FPISVYNRTTSKVDE----TLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G--~~V~v~dr~~~~~~~----l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
++||+|||+ |.+|..+|..++..| .+|.++|+++++++. +... ... ..++....++.+.++. +|+||+
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~-~~~-~~~i~~t~d~~~al~d---ADvVvi 82 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC-GFE-GLNLTFTSDIKEALTD---AKYIVS 82 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHH-CCT-TCCCEEESCHHHHHTT---EEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhC-cCC-CCceEEcCCHHHHhCC---CCEEEE
Confidence 468999998 999999999999998 489999999887654 2221 111 0146667788776666 999999
Q ss_pred EcCCC----c-----------hHHHHHHHHHhcCCCCc-EEEecCCC
Q 010637 79 LVKAG----S-----------PVDQTIAALSEHMSPGD-CIIDGGNE 109 (505)
Q Consensus 79 ~vp~~----~-----------~v~~vl~~l~~~l~~g~-iIId~st~ 109 (505)
+.... . .++++.+.+..+. ++. +|+..||-
T Consensus 83 taG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~-p~a~~vlvvsNP 128 (343)
T 3fi9_A 83 SGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYC-PDCKHVIIIFNP 128 (343)
T ss_dssp CCC-------CHHHHHHHHHHHHHHHHHHHHHHC-TTCCEEEECSSS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-cCcEEEEEecCc
Confidence 86321 1 1233334555554 555 36777764
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0001 Score=75.18 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=69.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|+|+|.+|...+..+...|.+|+++||++++.+.+.+.+... + ....+.+++.+.++.+|+||.+++.+..
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~ 243 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR----VELLYSNSAEIETAVAEADLLIGAVLVPGR 243 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG----SEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCce----eEeeeCCHHHHHHHHcCCCEEEECCCcCCC
Confidence 5799999999999999999999999999999999988887654321 2 1222334443333459999999865421
Q ss_pred -HHH-HHHHHHhcCCCCcEEEecCCC
Q 010637 86 -VDQ-TIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 -v~~-vl~~l~~~l~~g~iIId~st~ 109 (505)
... +.+...+.++++.+|+|.+..
T Consensus 244 ~~~~li~~~~~~~~~~g~~ivdv~~~ 269 (361)
T 1pjc_A 244 RAPILVPASLVEQMRTGSVIVDVAVD 269 (361)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred CCCeecCHHHHhhCCCCCEEEEEecC
Confidence 000 123345567788889888753
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=7.5e-05 Score=74.92 Aligned_cols=87 Identities=10% Similarity=0.258 Sum_probs=62.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++||+|||+|.||+.++..|.+. +.++ .++|+++++ .+. . ++..++++++++. .+|+|++++|+.
T Consensus 3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-----~---gv~~~~d~~~ll~---~~DvViiatp~~ 69 (320)
T 1f06_A 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-----T---PVFDVADVDKHAD---DVDVLFLCMGSA 69 (320)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-----S---CEEEGGGGGGTTT---TCSEEEECSCTT
T ss_pred CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-----C---CCceeCCHHHHhc---CCCEEEEcCCcH
Confidence 35899999999999999999887 5664 588998665 221 1 3566677777663 499999999987
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
...+.+. ..+..|..+++....
T Consensus 70 ~h~~~~~----~al~aG~~Vv~ekp~ 91 (320)
T 1f06_A 70 TDIPEQA----PKFAQFACTVDTYDN 91 (320)
T ss_dssp THHHHHH----HHHTTTSEEECCCCC
T ss_pred HHHHHHH----HHHHCCCEEEECCCC
Confidence 5544333 345567877776554
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00014 Score=71.92 Aligned_cols=114 Identities=17% Similarity=0.046 Sum_probs=77.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+||+|+|+ |.||..++++|.+.|++ .++..+|.+.. ++ .. ++..+.+++|+.+.. .+|++++++|+.
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~~-~v~~VnP~~~g---~~--i~---G~~vy~sl~el~~~~-~~Dv~Ii~vp~~- 75 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGTK-IVAGVTPGKGG---ME--VL---GVPVYDTVKEAVAHH-EVDASIIFVPAP- 75 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CE--ET---TEEEESSHHHHHHHS-CCSEEEECCCHH-
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCCe-EEEEECCCCCC---ce--EC---CEEeeCCHHHHhhcC-CCCEEEEecCHH-
Confidence 468999998 99999999999999998 44555554310 01 11 478889999998721 299999999985
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCch-hHHHHHHHHHHCCCeEEeCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~-~t~~~~~~l~~~gi~~i~~p 132 (505)
.+.+++++....= - ..++-.+++.+. +..++.+..++.|+.+++.-
T Consensus 76 ~~~~~~~ea~~~G-i-~~vVi~t~G~~~~~~~~l~~~a~~~gi~vigPN 122 (288)
T 1oi7_A 76 AAADAALEAAHAG-I-PLIVLITEGIPTLDMVRAVEEIKALGSRLIGGN 122 (288)
T ss_dssp HHHHHHHHHHHTT-C-SEEEECCSCCCHHHHHHHHHHHHHHTCEEEESS
T ss_pred HHHHHHHHHHHCC-C-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence 6677776665531 2 223335555544 34566677777899887643
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00032 Score=71.42 Aligned_cols=111 Identities=19% Similarity=0.148 Sum_probs=75.6
Q ss_pred cEEEEcccHHHHHHHHHHHhCC--------Cc-EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 8 RIGLAGLAVMGQNLALNVAEKG--------FP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G--------~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
||||||+|.||...+..+.... .+ |.++|+++++.+++.++... ...++|++++++. ...|+|++
T Consensus 8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~-----~~~~~d~~~ll~~-~~iDaV~I 81 (390)
T 4h3v_A 8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGW-----STTETDWRTLLER-DDVQLVDV 81 (390)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTC-----SEEESCHHHHTTC-TTCSEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCC-----CcccCCHHHHhcC-CCCCEEEE
Confidence 7999999999999888887542 24 45889999999988876432 2568899999875 34799999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHH---HHHHCCCeE
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIH---EASQKGLLY 128 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~---~l~~~gi~~ 128 (505)
++|+....+.++..|. .|+ +++.- =+....+.+++.+ ...+.|+.+
T Consensus 82 ~tP~~~H~~~~~~al~----aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~ 132 (390)
T 4h3v_A 82 CTPGDSHAEIAIAALE----AGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRS 132 (390)
T ss_dssp CSCGGGHHHHHHHHHH----TTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCE
T ss_pred eCChHHHHHHHHHHHH----cCCCceeecCcccchhHHHHHHHHHHHHHhcCCce
Confidence 9999877665555443 343 55542 1223345556633 344455543
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.61 E-value=6.8e-05 Score=73.88 Aligned_cols=102 Identities=13% Similarity=0.104 Sum_probs=65.6
Q ss_pred cCCCCcEEEEc-ccHHHHHHHHHHHhC-CCcEE-EEeCChHH-----HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCc
Q 010637 3 ASALSRIGLAG-LAVMGQNLALNVAEK-GFPIS-VYNRTTSK-----VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 3 ~~~~~~IgIIG-lG~MG~~lA~~La~~-G~~V~-v~dr~~~~-----~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~ad 74 (505)
|++++||+|+| +|.||+.++..+.+. ++++. ++|+++.. +.++.... . .++.+++++++++.. +|
T Consensus 18 m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~-~---~gv~v~~dl~~ll~~---aD 90 (288)
T 3ijp_A 18 GPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD-F---LGVRITDDPESAFSN---TE 90 (288)
T ss_dssp ---CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCS-C---CSCBCBSCHHHHTTS---CS
T ss_pred ccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccC-c---CCceeeCCHHHHhcC---CC
Confidence 44556899999 999999999998854 67755 66887532 11111100 1 246778899998875 99
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHH
Q 010637 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~ 115 (505)
+||-+.++. .+.+. +...+..|.-+|.++|+......
T Consensus 91 VvIDFT~p~-a~~~~---~~~~l~~Gv~vViGTTG~~~e~~ 127 (288)
T 3ijp_A 91 GILDFSQPQ-ASVLY---ANYAAQKSLIHIIGTTGFSKTEE 127 (288)
T ss_dssp EEEECSCHH-HHHHH---HHHHHHHTCEEEECCCCCCHHHH
T ss_pred EEEEcCCHH-HHHHH---HHHHHHcCCCEEEECCCCCHHHH
Confidence 999887553 33333 33345567778888888755433
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00025 Score=70.92 Aligned_cols=114 Identities=12% Similarity=-0.046 Sum_probs=78.1
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--------hcCCCcE
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--------SIQRPRS 75 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--------~l~~adv 75 (505)
|+||||||+ |.||...+..|.+.+.+| .++|+++++. .+.+... ....+++++++.+ .-...|+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~-----~~~~~~~~~~ll~~~~~l~~~~~~~vD~ 76 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISP-----QSEFFTEFEFFLDHASNLKRDSATALDY 76 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCT-----TCEEESSHHHHHHHHHHHTTSTTTSCCE
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCC-----CCcEECCHHHHHHhhhhhhhccCCCCcE
Confidence 579999999 799999999999988775 4789998762 2222211 3677899999873 1135899
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCc-EEEecC-CCCchhHHHHHHHHHHCCCeEE
Q 010637 76 VIILVKAGSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i 129 (505)
|++++|+....+-+...+. .|+ ++++-= +....+.+++.+..+++|..+.
T Consensus 77 V~I~tP~~~H~~~~~~al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 128 (318)
T 3oa2_A 77 VSICSPNYLHYPHIAAGLR----LGCDVICEKPLVPTPEMLDQLAVIERETDKRLY 128 (318)
T ss_dssp EEECSCGGGHHHHHHHHHH----TTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEE
T ss_pred EEECCCcHHHHHHHHHHHH----CCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 9999999766554444333 343 555531 3345667777777777776554
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00019 Score=74.33 Aligned_cols=121 Identities=18% Similarity=0.126 Sum_probs=75.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC---CcEEEEeCChHHHHHHHHhhcccCCCCeee----eCCHHHHHhhcCC--CcEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG---FPISVYNRTTSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQR--PRSV 76 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G---~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~----~~s~~e~v~~l~~--advI 76 (505)
|++|.|||+|.+|..++..|+++| .+|.+++|++++.+++.+.....+..++.. ..+.+++.+.++. +|+|
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvV 80 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIV 80 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEE
Confidence 368999999999999999999998 389999999999888776432100001211 1223333322222 7999
Q ss_pred EEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCch--------hHHHHHHHHHHCCCeEEe
Q 010637 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL--------NTERRIHEASQKGLLYLG 130 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~--------~t~~~~~~l~~~gi~~i~ 130 (505)
|.+.+... ...+++.. +..|..++|.++..+. ...++.+..++.|+.++.
T Consensus 81 in~ag~~~-~~~v~~a~---l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~ 138 (405)
T 4ina_A 81 LNIALPYQ-DLTIMEAC---LRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALL 138 (405)
T ss_dssp EECSCGGG-HHHHHHHH---HHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEE
T ss_pred EECCCccc-ChHHHHHH---HHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEE
Confidence 99988753 33343333 3457778886554332 123455556666776543
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00034 Score=70.23 Aligned_cols=100 Identities=12% Similarity=0.084 Sum_probs=64.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhccc-CC-CCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE-GQ-LPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~-g~-~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+||+|||+|.||.++|..|+..|+ +|.++|+++++++.......+. .. .++....+..+... .+|+||++..
T Consensus 9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~---~aDiVvi~ag 85 (326)
T 3vku_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAK---DADLVVITAG 85 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGT---TCSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhc---CCCEEEECCC
Confidence 4689999999999999999999987 8999999998876433211100 00 02333333333334 3999999874
Q ss_pred CCc---------------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 82 AGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 82 ~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
... .++++.+.+..+ .++.+++..||-
T Consensus 86 ~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~ilvvtNP 127 (326)
T 3vku_A 86 APQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANP 127 (326)
T ss_dssp CC----------------CHHHHHHHHHTT-TCCSEEEECSSS
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEccCc
Confidence 321 133444555554 467788888774
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0001 Score=75.87 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=64.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeee--CC----------------------
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH--YT---------------------- 62 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~--~s---------------------- 62 (505)
.+|+|+|+|.+|...+..+...|.+|.++|+++++.+.+.+.+. ... ++
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga-------~~~~i~~~~~~~~~~~~~~~~~~s~~~~~ 245 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG-------KFITVDDEAMKTAETAGGYAKEMGEEFRK 245 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC-------EECCC-----------------------C
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC-------eEEeecccccccccccccchhhcCHHHHh
Confidence 47999999999999999999999999999999988777665432 111 01
Q ss_pred --HHHHHhhcCCCcEEEEEc--CCCchHHHHH-HHHHhcCCCCcEEEecCC
Q 010637 63 --PRDFVLSIQRPRSVIILV--KAGSPVDQTI-AALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 63 --~~e~v~~l~~advIil~v--p~~~~v~~vl-~~l~~~l~~g~iIId~st 108 (505)
.+.+.+.++.+|+||.++ |... ...++ .+.+..+++|.+|+|.+.
T Consensus 246 ~~~~~l~~~~~~aDvVi~~~~~pg~~-~~~li~~~~l~~mk~g~vivdva~ 295 (384)
T 1l7d_A 246 KQAEAVLKELVKTDIAITTALIPGKP-APVLITEEMVTKMKPGSVIIDLAV 295 (384)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSC-CCCCSCHHHHTTSCTTCEEEETTG
T ss_pred hhHHHHHHHhCCCCEEEECCccCCCC-CCeeeCHHHHhcCCCCCEEEEEec
Confidence 111223334599999888 3211 11122 445566788999999873
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00011 Score=74.00 Aligned_cols=125 Identities=15% Similarity=0.177 Sum_probs=76.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC---------CCcEE-EEeCChHHHH-----H-HHHhhcccCCCCeeeeC--CHHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK---------GFPIS-VYNRTTSKVD-----E-TLDRAHREGQLPLTGHY--TPRDFV 67 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~---------G~~V~-v~dr~~~~~~-----~-l~~~~~~~g~~~i~~~~--s~~e~v 67 (505)
|+||||||+|.||..++..|.++ +.+|. ++|+++.+.+ + +...... ...++ ++++++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~-----~~~~~~~d~~~ll 76 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRET-----GMLRDDAKAIEVV 76 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHH-----SSCSBCCCHHHHH
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccC-----ccccCCCCHHHHh
Confidence 46899999999999999999875 45554 6788865422 1 2111110 12334 899998
Q ss_pred hhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCch-hHHHHHHHHHHCCCeEE-eCCCCCC
Q 010637 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYL-GMGVSGG 136 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~-~t~~~~~~l~~~gi~~i-~~pvsGg 136 (505)
+. ...|+|+.++|+....-+..+.....+..|.-|+..+..... ...++.+..+++|..|+ ++-+.+|
T Consensus 77 ~~-~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~~ea~v~~g 146 (327)
T 3do5_A 77 RS-ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGA 146 (327)
T ss_dssp HH-SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEECGGGSSTT
T ss_pred cC-CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEEEEEEeeec
Confidence 75 347999999998643111334445567788888866443222 23445555567787654 4444443
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00023 Score=70.33 Aligned_cols=115 Identities=13% Similarity=0.080 Sum_probs=77.0
Q ss_pred CCcCC-CCcEEEEcccHHHHHHHHHHHh----CCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCc
Q 010637 1 MEASA-LSRIGLAGLAVMGQNLALNVAE----KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 1 m~~~~-~~~IgIIGlG~MG~~lA~~La~----~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~ad 74 (505)
|.+.+ ++||||||+|.||...+.+|.. .+.++. ++|++.. .+. . ++. ..+++++++. ...|
T Consensus 1 M~~~~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~-----a~~---~---g~~-~~~~~ell~~-~~vD 67 (294)
T 1lc0_A 1 MITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-----GSL---D---EVR-QISLEDALRS-QEID 67 (294)
T ss_dssp CCCCCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-----CEE---T---TEE-BCCHHHHHHC-SSEE
T ss_pred CCCCCCcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH-----HHH---c---CCC-CCCHHHHhcC-CCCC
Confidence 54333 4689999999999999998865 356654 7788641 111 1 244 5799999873 2379
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 75 SVIILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
+|++++|+....+.+... +..|+ ++++- -+....+.+++.+..+++|+.+..+.
T Consensus 68 ~V~i~tp~~~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~ 123 (294)
T 1lc0_A 68 VAYICSESSSHEDYIRQF----LQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEH 123 (294)
T ss_dssp EEEECSCGGGHHHHHHHH----HHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEeCCcHhHHHHHHHH----HHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEE
Confidence 999999997665544433 33455 66663 34456677788888888887665443
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0003 Score=70.23 Aligned_cols=114 Identities=15% Similarity=0.059 Sum_probs=77.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh-------hcCCCcEE
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL-------SIQRPRSV 76 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~-------~l~~advI 76 (505)
|+||||||+ |.||...+..|.+.+.+| .++|+++++. .+.+... ....+.+++++.+ .-...|+|
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~-----~~~~~~~~~~ll~~~~~l~~~~~~vD~V 76 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG-LVDSFFP-----EAEFFTEPEAFEAYLEDLRDRGEGVDYL 76 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCT-----TCEEESCHHHHHHHHHHHHHTTCCCSEE
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCC-----CCceeCCHHHHHHHhhhhcccCCCCcEE
Confidence 579999999 789999999999988775 4789998862 2222211 3677899999883 11458999
Q ss_pred EEEcCCCchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeEE
Q 010637 77 IILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (505)
++++|+....+-+...| ..|+ ++++- -+....+.+++.+..+++|..+.
T Consensus 77 ~I~tP~~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 127 (312)
T 3o9z_A 77 SIASPNHLHYPQIRMAL----RLGANALSEKPLVLWPEEIARLKELEARTGRRVY 127 (312)
T ss_dssp EECSCGGGHHHHHHHHH----HTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEE
T ss_pred EECCCchhhHHHHHHHH----HCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 99999976544443333 3444 45542 12345667777777777777553
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00058 Score=67.68 Aligned_cols=104 Identities=9% Similarity=0.020 Sum_probs=79.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
+.++.+|+++|.+.++.|++++|++.|.++. ++|.+++.++|+.|. .+|+.++........++..+. -
T Consensus 168 G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~------Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~p~-----~ 235 (297)
T 4gbj_A 168 GAANVIKLAGNFMIACSLEMMGEAFTMAEKN------GISRQSIYEMLTSTL-FAAPIFQNYGKLVASNTYEPV-----A 235 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHTTT-TCSHHHHHHHHHHHHTCCCSC-----S
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhhc-ccCchhhccCccccCCCCCCc-----c
Confidence 5789999999999999999999999998853 499999999999884 588888875555443321110 1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010637 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~ 443 (505)
|.-. -...+++-++..|-+.|+|+|....+...|..
T Consensus 236 f~~~--l~~KDl~l~~~~A~~~g~~~p~~~~~~~~~~~ 271 (297)
T 4gbj_A 236 FRFP--LGLKDINLTLQTASDVNAPMPFADIIRNRFIS 271 (297)
T ss_dssp SBHH--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred chhH--HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 2111 22356788899999999999999988886653
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00028 Score=69.88 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=77.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~ 83 (505)
.+|.|+|+ |.||..++++|.+.|++ .++..+|.+.. ++ .. ++..+.+++++.+ . +|++++++|+.
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g---~~--i~---G~~vy~sl~el~~~~~---~Dv~ii~vp~~ 81 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGG---QN--VH---GVPVFDTVKEAVKETD---ANASVIFVPAP 81 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTT---CE--ET---TEEEESSHHHHHHHHC---CCEEEECCCHH
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCC---ce--EC---CEeeeCCHHHHhhcCC---CCEEEEccCHH
Confidence 46888898 99999999999999999 66676665320 01 01 4778899999987 5 99999999995
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCch-hHHHHHHHHHHCCCeEEeC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~-~t~~~~~~l~~~gi~~i~~ 131 (505)
.+.+++++.... .. ..++-.+++.+. +..++.+..++.|+.+++.
T Consensus 82 -~~~~~v~ea~~~-Gi-~~vVi~t~G~~~~~~~~l~~~A~~~gi~viGP 127 (294)
T 2yv1_A 82 -FAKDAVFEAIDA-GI-ELIVVITEHIPVHDTMEFVNYAEDVGVKIIGP 127 (294)
T ss_dssp -HHHHHHHHHHHT-TC-SEEEECCSCCCHHHHHHHHHHHHHHTCEEECS
T ss_pred -HHHHHHHHHHHC-CC-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEcC
Confidence 666677666553 12 223444555544 3456667777789988764
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0002 Score=68.05 Aligned_cols=114 Identities=8% Similarity=0.000 Sum_probs=73.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee-eCCHHHHHh-hcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVL-SIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~v~-~l~~advIil~vp~~ 83 (505)
.++|.|+|+|.+|..++..|.+.|+ |.++|+++++++.+. .+.. -+.. ..+.+.+.+ .++.+|.||++++++
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~----~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 82 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGAN----FVHGDPTRVSDLEKANVRGARAVIVDLESD 82 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCE----EEESCTTCHHHHHHTTCTTCSEEEECCSCH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCe----EEEcCCCCHHHHHhcCcchhcEEEEcCCCc
Confidence 4579999999999999999999999 999999999888776 3321 0111 123333322 366799999999886
Q ss_pred chHHHHHHHHHhcCCCC-cEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 84 SPVDQTIAALSEHMSPG-DCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g-~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
. ....+......+.++ .+|+...+... . +.+...|+..+-.|
T Consensus 83 ~-~n~~~~~~a~~~~~~~~iia~~~~~~~--~----~~l~~~G~~~vi~p 125 (234)
T 2aef_A 83 S-ETIHCILGIRKIDESVRIIAEAERYEN--I----EQLRMAGADQVISP 125 (234)
T ss_dssp H-HHHHHHHHHHHHCSSSEEEEECSSGGG--H----HHHHHHTCSEEECH
T ss_pred H-HHHHHHHHHHHHCCCCeEEEEECCHhH--H----HHHHHCCCCEEECH
Confidence 3 333333334445555 67777655432 2 23334577655333
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00067 Score=70.69 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=88.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChHHHHHHHHhh-c------------------ccCCCCeeeeCCHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPI-SVYNRTTSKVDETLDRA-H------------------REGQLPLTGHYTPR 64 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V-~v~dr~~~~~~~l~~~~-~------------------~~g~~~i~~~~s~~ 64 (505)
..||||||+|.||..++..+.+. +.+| .++|+++++.+.+.++. . ..+ ....+++++
T Consensus 23 ~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g--~~~v~~D~e 100 (446)
T 3upl_A 23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAG--KIAVTDDND 100 (446)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTT--CEEEESCHH
T ss_pred ceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccC--CceEECCHH
Confidence 35899999999999999988764 5554 47899999988876531 1 001 246788999
Q ss_pred HHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchh---HHHHHHHHHHCCCeEEeCCCCCCHHHhh
Q 010637 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN---TERRIHEASQKGLLYLGMGVSGGEEGAR 141 (505)
Q Consensus 65 e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~---t~~~~~~l~~~gi~~i~~pvsGg~~~a~ 141 (505)
++++. ...|+|++++|....-. +-....+..|+-|+-... +.+ ..++.+..+++|+.|.-+
T Consensus 101 eLL~d-~dIDaVviaTp~p~~H~---e~a~~AL~AGKHVv~~nk--~l~~~eg~eL~~~A~e~Gvvl~~~---------- 164 (446)
T 3upl_A 101 LILSN-PLIDVIIDATGIPEVGA---ETGIAAIRNGKHLVMMNV--EADVTIGPYLKAQADKQGVIYSLG---------- 164 (446)
T ss_dssp HHHTC-TTCCEEEECSCCHHHHH---HHHHHHHHTTCEEEECCH--HHHHHHHHHHHHHHHHHTCCEEEC----------
T ss_pred HHhcC-CCCCEEEEcCCChHHHH---HHHHHHHHcCCcEEecCc--ccCHHHHHHHHHHHHHhCCeeeec----------
Confidence 99874 23799999998742212 223334556777774322 222 233444445556554322
Q ss_pred cCCccccCCC-HHHHHHHHHHHHHHhcccCCCCceEEeC
Q 010637 142 HGPSLMPGGS-FEAYNNIRDILQKVAAQVDDGPCVTYIG 179 (505)
Q Consensus 142 ~G~~im~gg~-~ea~~~v~~ll~~iga~~~~~~~v~~vG 179 (505)
.|+ +...-.+-.+.+.+| ..++.+|
T Consensus 165 -------~gdqp~~~~eLv~~a~~~G------~~~v~~G 190 (446)
T 3upl_A 165 -------AGDEPSSCMELIEFVSALG------YEVVSAG 190 (446)
T ss_dssp -------TTSHHHHHHHHHHHHHHTT------CEEEEEE
T ss_pred -------CCcchHHHHHHHHHHHhCC------CeEEEec
Confidence 233 233344555566777 5677776
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00022 Score=70.31 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=75.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCC----CCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ----LPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~----~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+++.|+|+|.||.++|..|++.| +|+++||+.++.+++.+.....+. ..+... +. .+.+..+|+||.+++.
T Consensus 129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~-~~---~~~~~~~DilVn~ag~ 203 (287)
T 1nvt_A 129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFS-GL---DVDLDGVDIIINATPI 203 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEE-CT---TCCCTTCCEEEECSCT
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEe-eH---HHhhCCCCEEEECCCC
Confidence 57999999999999999999999 999999999988777654211000 001221 22 2334459999999987
Q ss_pred CchH--HHH-HHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 83 GSPV--DQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 83 ~~~v--~~v-l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
+..- +.. +. -...+.++.+++|.+.. |..+ ++.+..+++|..++
T Consensus 204 ~~~~~~~~~~~~-~~~~l~~~~~v~Dv~y~-p~~t-~ll~~a~~~G~~~~ 250 (287)
T 1nvt_A 204 GMYPNIDVEPIV-KAEKLREDMVVMDLIYN-PLET-VLLKEAKKVNAKTI 250 (287)
T ss_dssp TCTTCCSSCCSS-CSTTCCSSSEEEECCCS-SSSC-HHHHHHHTTTCEEE
T ss_pred CCCCCCCCCCCC-CHHHcCCCCEEEEeeeC-CccC-HHHHHHHHCCCEEe
Confidence 6421 000 10 02346788999999874 4444 34555666777654
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00044 Score=69.09 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=64.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCC--CcEEEEeCChHHHH--HHHHhhcccCCCCeeee---CCHHHHHhhcCCCcEEEE
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKG--FPISVYNRTTSKVD--ETLDRAHREGQLPLTGH---YTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G--~~V~v~dr~~~~~~--~l~~~~~~~g~~~i~~~---~s~~e~v~~l~~advIil 78 (505)
|||+|||+ |.+|.+++..|+..| ++|.++|+++.+.. .+.+ .... .++... +++++.++. +|+||+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~-~~~~--~~l~~~~~t~d~~~a~~~---aDvVvi 74 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSH-IETR--ATVKGYLGPEQLPDCLKG---CDVVVI 74 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTT-SSSS--CEEEEEESGGGHHHHHTT---CSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhc-cCcC--ceEEEecCCCCHHHHhCC---CCEEEE
Confidence 58999998 999999999999988 78999999972211 1111 1110 023432 457766665 999999
Q ss_pred EcCCC---------------chHHHHHHHHHhcCCCCcEEEecCCCCchhHH
Q 010637 79 LVKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (505)
Q Consensus 79 ~vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~ 115 (505)
+...+ ..++++++.+.++. ++.+||..|| |.++.
T Consensus 75 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~sN--Pv~~~ 123 (314)
T 1mld_A 75 PAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISN--PVNST 123 (314)
T ss_dssp CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSS--CHHHH
T ss_pred CCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECC--Ccchh
Confidence 97432 12455556666655 5556666766 44443
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0004 Score=69.76 Aligned_cols=98 Identities=11% Similarity=0.102 Sum_probs=61.5
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCC--CcEEEEeCChHH--HHHHHHhhcccCCCCeee---eCCHHHHHhhcCCCcEE
Q 010637 5 ALSRIGLAG-LAVMGQNLALNVAEKG--FPISVYNRTTSK--VDETLDRAHREGQLPLTG---HYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 5 ~~~~IgIIG-lG~MG~~lA~~La~~G--~~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~---~~s~~e~v~~l~~advI 76 (505)
++|||+||| +|.+|..++..|+..| ++|.++|++++. ..++..... . ..+.. .+++++.++. +|+|
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~-~--~~v~~~~~t~d~~~al~g---aDvV 80 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDT-G--AVVRGFLGQQQLEAALTG---MDLI 80 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCS-S--CEEEEEESHHHHHHHHTT---CSEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccc-c--ceEEEEeCCCCHHHHcCC---CCEE
Confidence 456999999 8999999999999999 899999998762 112222111 0 01333 2244455554 9999
Q ss_pred EEEcCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 77 IILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 77 il~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
|++.+.+. .++++++.+...- +..+|+..||-
T Consensus 81 i~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~SNP 127 (326)
T 1smk_A 81 IVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLISNP 127 (326)
T ss_dssp EECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSS
T ss_pred EEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCc
Confidence 99985321 2344445555544 55666666553
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0003 Score=70.27 Aligned_cols=121 Identities=14% Similarity=0.171 Sum_probs=77.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC---hHHHHHHHHhhcccCCCCe--eeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT---TSKVDETLDRAHREGQLPL--TGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~---~~~~~~l~~~~~~~g~~~i--~~~~s~~e~v~~l~~advIil~v 80 (505)
+++.|+|+|-+|++++..|++.|. +|++++|+ .++.+++.++........+ ...++.+++.+.+..+|+||-++
T Consensus 155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaT 234 (315)
T 3tnl_A 155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNAT 234 (315)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECc
Confidence 479999999999999999999998 89999999 8888877654321100012 22234444433333499999999
Q ss_pred CCCchHH--H-HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 81 KAGSPVD--Q-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 81 p~~~~v~--~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
|.+..-. . .+. ....++++.+|+|.--.. ..| .+.+..+++|...++
T Consensus 235 p~Gm~~~~~~~p~~-~~~~l~~~~~V~DlvY~P-~~T-~ll~~A~~~G~~~~~ 284 (315)
T 3tnl_A 235 GVGMKPFEGETLLP-SADMLRPELIVSDVVYKP-TKT-RLLEIAEEQGCQTLN 284 (315)
T ss_dssp STTSTTSTTCCSCC-CGGGCCTTCEEEESCCSS-SSC-HHHHHHHHTTCEEEC
T ss_pred cCCCCCCCCCCCCC-cHHHcCCCCEEEEeccCC-CCC-HHHHHHHHCCCeEeC
Confidence 9763211 0 010 123467889999986643 334 344555667776543
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00065 Score=70.97 Aligned_cols=118 Identities=18% Similarity=0.263 Sum_probs=75.2
Q ss_pred CcEEEEcccHHHHHHHHHHHh----------CCCcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE
Q 010637 7 SRIGLAGLAVMGQNLALNVAE----------KGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~----------~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~adv 75 (505)
.+|||||+|.||..++..|.+ .+.+| .++||++++.+.+.. ....+++++++++. ...|+
T Consensus 11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~--------~~~~~~d~~ell~d-~diDv 81 (444)
T 3mtj_A 11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAG--------GLPLTTNPFDVVDD-PEIDI 81 (444)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHT--------TCCEESCTHHHHTC-TTCCE
T ss_pred ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcc--------cCcccCCHHHHhcC-CCCCE
Confidence 479999999999999987764 23444 478999988766632 14567899999874 23799
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCC-CchhHHHHHHHHHHCCCeE-EeCCCCCC
Q 010637 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLNTERRIHEASQKGLLY-LGMGVSGG 136 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~-~~~~t~~~~~~l~~~gi~~-i~~pvsGg 136 (505)
|++++|......+.+ ...|..|+-|+-.... ......++.+..+++|+.| +.+.+.+|
T Consensus 82 Vve~tp~~~~h~~~~---~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~g 141 (444)
T 3mtj_A 82 VVELIGGLEPARELV---MQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGG 141 (444)
T ss_dssp EEECCCSSTTHHHHH---HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSSTT
T ss_pred EEEcCCCchHHHHHH---HHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeCC
Confidence 999998632333333 2345567777743221 0112334455556678776 34544443
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00057 Score=68.69 Aligned_cols=107 Identities=9% Similarity=0.119 Sum_probs=73.5
Q ss_pred CcEEEEcccHHHH-HHHHHHHhC-CCcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQ-NLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~-~lA~~La~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+||||||+|.||. ..+..|.+. +++| .++|+++++ . ++..+.+++++++.....|+|++++|+.
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~-------g~~~~~~~~~ll~~~~~vD~V~i~tp~~ 92 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------E-------GVNSYTTIEAMLDAEPSIDAVSLCMPPQ 92 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------T-------TSEEESSHHHHHHHCTTCCEEEECSCHH
T ss_pred ceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------c-------CCCccCCHHHHHhCCCCCCEEEEeCCcH
Confidence 5899999999998 788888876 6675 478998653 1 3667899999987544689999999986
Q ss_pred chHHHHHHHHHhcCCCCc-EEEecC-CCCchhHHHHHHHHHHCCCeEEe
Q 010637 84 SPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
...+-+... +..|+ ++++-- .....+.+++.+..+++|+.+.-
T Consensus 93 ~H~~~~~~a----l~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v 137 (330)
T 4ew6_A 93 YRYEAAYKA----LVAGKHVFLEKPPGATLSEVADLEALANKQGASLFA 137 (330)
T ss_dssp HHHHHHHHH----HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHH----HHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEE
Confidence 443333332 33455 444421 23455666777777777775543
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00015 Score=71.37 Aligned_cols=109 Identities=12% Similarity=0.049 Sum_probs=75.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|+|+|-+|++++..|++.|. +|+++||++++.+++.+.. . ..+.+++.+ + .+|+||-++|.+..
T Consensus 123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~--------~-~~~~~~l~~-l-~~DivInaTp~Gm~ 191 (282)
T 3fbt_A 123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEF--------K-VISYDELSN-L-KGDVIINCTPKGMY 191 (282)
T ss_dssp SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTS--------E-EEEHHHHTT-C-CCSEEEECSSTTST
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhc--------C-cccHHHHHh-c-cCCEEEECCccCcc
Confidence 579999999999999999999998 8999999999988876532 1 123444433 4 59999999988632
Q ss_pred H--HH-HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 86 V--DQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 v--~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
- +. .+. ...+.++.+|+|.--.. ..| .+.+..+++|...++
T Consensus 192 ~~~~~~pi~--~~~l~~~~~v~DlvY~P-~~T-~ll~~A~~~G~~~~~ 235 (282)
T 3fbt_A 192 PKEGESPVD--KEVVAKFSSAVDLIYNP-VET-LFLKYARESGVKAVN 235 (282)
T ss_dssp TSTTCCSSC--HHHHTTCSEEEESCCSS-SSC-HHHHHHHHTTCEEEC
T ss_pred CCCccCCCC--HHHcCCCCEEEEEeeCC-CCC-HHHHHHHHCcCeEeC
Confidence 1 10 010 12246789999986543 333 345555677876554
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00032 Score=68.61 Aligned_cols=96 Identities=15% Similarity=0.083 Sum_probs=64.8
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhC-CCcEE-EEeCChHHH-----HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEK-GFPIS-VYNRTTSKV-----DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~-G~~V~-v~dr~~~~~-----~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
|+||+|+| +|.||+.+++.+.+. ++++. ++||+.... .++.. ... ++..+++++++++. +|+||
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g--~~~---gv~v~~dl~~ll~~---~DVVI 78 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLG--KQT---GVALTDDIERVCAE---ADYLI 78 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTT--CCC---SCBCBCCHHHHHHH---CSEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhC--CCC---CceecCCHHHHhcC---CCEEE
Confidence 46999999 899999999998865 66766 478875321 11110 001 35677899998887 99999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchh
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN 113 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~ 113 (505)
.+.++. .+.+.+... +..|.-+|.++|+....
T Consensus 79 DfT~p~-a~~~~~~~a---l~~G~~vVigTTG~s~~ 110 (272)
T 4f3y_A 79 DFTLPE-GTLVHLDAA---LRHDVKLVIGTTGFSEP 110 (272)
T ss_dssp ECSCHH-HHHHHHHHH---HHHTCEEEECCCCCCHH
T ss_pred EcCCHH-HHHHHHHHH---HHcCCCEEEECCCCCHH
Confidence 998663 444444433 44566677777776544
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=6.6e-05 Score=73.65 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=61.3
Q ss_pred CCcCCCCcEEEEcc-cHHHHHHHHHHHh-CCCcEE-EEeCChHHHH--HHHHh-hcccCCCCeeeeCCHHHHHhhcCCCc
Q 010637 1 MEASALSRIGLAGL-AVMGQNLALNVAE-KGFPIS-VYNRTTSKVD--ETLDR-AHREGQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 1 m~~~~~~~IgIIGl-G~MG~~lA~~La~-~G~~V~-v~dr~~~~~~--~l~~~-~~~~g~~~i~~~~s~~e~v~~l~~ad 74 (505)
|.|.+ |||+|+|+ |.||+.++..+.+ .|++|. ++|+++++.. .+.+. +... .++...++++++++. +|
T Consensus 1 ~~~~~-mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~--~~v~~~~dl~~~l~~---~D 74 (273)
T 1dih_A 1 MHDAN-IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGK--TGVTVQSSLDAVKDD---FD 74 (273)
T ss_dssp -CCCB-EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSC--CSCCEESCSTTTTTS---CS
T ss_pred CCCCC-cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCc--CCceecCCHHHHhcC---CC
Confidence 55543 69999998 9999999998874 578876 7888764310 00000 0000 134556777776654 99
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
+||-+.++. ...+.+.. .+..|.-++-+++....
T Consensus 75 vVIDft~p~-~~~~~~~~---a~~~G~~vVigTtG~~~ 108 (273)
T 1dih_A 75 VFIDFTRPE-GTLNHLAF---CRQHGKGMVIGTTGFDE 108 (273)
T ss_dssp EEEECSCHH-HHHHHHHH---HHHTTCEEEECCCCCCH
T ss_pred EEEEcCChH-HHHHHHHH---HHhCCCCEEEECCCCCH
Confidence 999555442 33444333 34456667766665543
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00023 Score=71.63 Aligned_cols=116 Identities=7% Similarity=-0.027 Sum_probs=73.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCCh-HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~-v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|++||||||+|.+|...+..| ..+.+|. ++|+++ ++.+.+.+.....| .+...++|++++++. ...|+|++++|+
T Consensus 1 M~~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~-~~vD~V~I~tp~ 77 (337)
T 3ip3_A 1 MSLKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMN-IKPKKYNNWWEMLEK-EKPDILVINTVF 77 (337)
T ss_dssp -CEEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTT-CCCEECSSHHHHHHH-HCCSEEEECSSH
T ss_pred CceEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcC-CCCcccCCHHHHhcC-CCCCEEEEeCCc
Confidence 356999999999998888777 6677765 789987 34444433211100 124678999999874 247999999998
Q ss_pred CchHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCe
Q 010637 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~ 127 (505)
....+-+...+ ..|+ ++++- -.....+.+++.+..++.|..
T Consensus 78 ~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~ 120 (337)
T 3ip3_A 78 SLNGKILLEAL----ERKIHAFVEKPIATTFEDLEKIRSVYQKVRNE 120 (337)
T ss_dssp HHHHHHHHHHH----HTTCEEEECSSSCSSHHHHHHHHHHHHHHTTT
T ss_pred chHHHHHHHHH----HCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCc
Confidence 75544433333 3444 44442 122345666777777776654
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0009 Score=67.83 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=72.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|+|+|+|.+|...|+.|...|.+|.++|+++++ .++.+.. +.+.. +.+++... .+|+++-|-..+ .+
T Consensus 176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~-~~~a~~~------ga~~v-~~~ell~~--~~DIliP~A~~~-~I 244 (355)
T 1c1d_A 176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER-VAHAVAL------GHTAV-ALEDVLST--PCDVFAPCAMGG-VI 244 (355)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHHHT------TCEEC-CGGGGGGC--CCSEEEECSCSC-CB
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHhc------CCEEe-ChHHhhcC--ccceecHhHHHh-hc
Confidence 57999999999999999999999999999999876 3333322 23333 55565541 389987543222 22
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
. .+-++.+ +.++|++++|....+.+ ..+.+.++|+.++
T Consensus 245 ~---~~~~~~l-k~~iVie~AN~p~t~~e-A~~~L~~~gIlv~ 282 (355)
T 1c1d_A 245 T---TEVARTL-DCSVVAGAANNVIADEA-ASDILHARGILYA 282 (355)
T ss_dssp C---HHHHHHC-CCSEECCSCTTCBCSHH-HHHHHHHTTCEEC
T ss_pred C---HHHHhhC-CCCEEEECCCCCCCCHH-HHHHHHhCCEEEE
Confidence 1 1222344 36899999998654333 3577888887664
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00012 Score=71.33 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=52.0
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 4 ~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.|||+|.|.|+|.+|..++..|.++||+|.+.+|++++.+.+...+.. + ...++.++ + +..+|+||.+...
T Consensus 3 ~m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~-~~~D~~d~-~-~~~~d~vi~~a~~ 73 (286)
T 3ius_A 3 AMTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAE-----P-LLWPGEEP-S-LDGVTHLLISTAP 73 (286)
T ss_dssp --CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEE-----E-EESSSSCC-C-CTTCCEEEECCCC
T ss_pred CCcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCe-----E-EEeccccc-c-cCCCCEEEECCCc
Confidence 356899999999999999999999999999999999888776654321 1 11233332 2 4568999888754
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0012 Score=65.28 Aligned_cols=99 Identities=12% Similarity=0.105 Sum_probs=64.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHH----HHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDET----LDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l----~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|||+|||+|.+|.++|..|+.++. ++.+||+++++++-. ....... ...++....+.+++. .+|+||++
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~----~aDvVvit 76 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLK----GSEIIVVT 76 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGT----TCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhC----CCCEEEEe
Confidence 689999999999999999998875 799999998765432 2211000 001245556665543 39999998
Q ss_pred cC----CCc-----------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 80 VK----AGS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp----~~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.- ++. .++++.+++.++ .++.+|+-.||-.
T Consensus 77 AG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~-~p~aivlvvsNPv 121 (294)
T 2x0j_A 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPM 121 (294)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSH
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCceEEEEecCcc
Confidence 62 222 233444566555 4667788887753
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00034 Score=70.53 Aligned_cols=93 Identities=11% Similarity=0.085 Sum_probs=61.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcE-EEEeCChHHHHHHHHhhc-c-cCCC----------CeeeeCCHHHHHhhcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-FPI-SVYNRTTSKVDETLDRAH-R-EGQL----------PLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-~~V-~v~dr~~~~~~~l~~~~~-~-~g~~----------~i~~~~s~~e~v~~l~ 71 (505)
|.||||+|+|.||+.+++.|.++. .+| .+.|+++++...+.+... . .+.+ .+....+++++...
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~-- 79 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEK-- 79 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTT--
T ss_pred CcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccC--
Confidence 469999999999999999998763 455 467888877776664321 0 0000 12345678888765
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEe
Q 010637 72 RPRSVIILVKAGSPVDQTIAALSEHMSPGDCIID 105 (505)
Q Consensus 72 ~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId 105 (505)
.|+|++|+|.+...+.. . .++..|..||.
T Consensus 80 -vDvV~~aTp~~~h~~~a-~---~~l~aGk~Vi~ 108 (334)
T 2czc_A 80 -VDIIVDATPGGIGAKNK-P---LYEKAGVKAIF 108 (334)
T ss_dssp -CSEEEECCSTTHHHHHH-H---HHHHHTCEEEE
T ss_pred -CCEEEECCCccccHHHH-H---HHHHcCCceEe
Confidence 99999999997543333 2 23345666664
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00052 Score=68.29 Aligned_cols=113 Identities=13% Similarity=0.023 Sum_probs=78.7
Q ss_pred CcEEEE-cc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLA-GL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgII-Gl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|+|| |+ |.+|..++.+|.+.|++ .+|+.+|.+.. ++ .. ++..+.+++|+.+.. .+|++++++|+.
T Consensus 14 ~siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g---~~--i~---G~~vy~sl~el~~~~-~vD~avI~vP~~- 82 (305)
T 2fp4_A 14 NTKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGG---KT--HL---GLPVFNTVKEAKEQT-GATASVIYVPPP- 82 (305)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CE--ET---TEEEESSHHHHHHHH-CCCEEEECCCHH-
T ss_pred CcEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCc---ce--EC---CeeeechHHHhhhcC-CCCEEEEecCHH-
Confidence 458999 98 99999999999999999 55666665311 01 11 477888999998711 299999999995
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCc-hhHHHHHHHHHHC-CCeEEeCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWY-LNTERRIHEASQK-GLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~-~~t~~~~~~l~~~-gi~~i~~p 132 (505)
.+.++++++...= - ..++..+.+.+ .+..++.+.+++. |+.+++.-
T Consensus 83 ~~~~~~~e~i~~G-i-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPn 130 (305)
T 2fp4_A 83 FAAAAINEAIDAE-V-PLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPN 130 (305)
T ss_dssp HHHHHHHHHHHTT-C-SEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSS
T ss_pred HHHHHHHHHHHCC-C-CEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCC
Confidence 6777777666531 2 23333444443 3445677777888 99888643
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00084 Score=66.54 Aligned_cols=115 Identities=17% Similarity=0.087 Sum_probs=77.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+|.|+|+ |.||..++++|.+.|++ .++..+|.+.. ++ .. ++..+.|++++.+....+|++++++|+.
T Consensus 13 ~~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g---~~--i~---G~~vy~sl~el~~~~~~~DvaIi~vp~~- 82 (297)
T 2yv2_A 13 ETRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGG---SE--VH---GVPVYDSVKEALAEHPEINTSIVFVPAP- 82 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CE--ET---TEEEESSHHHHHHHCTTCCEEEECCCGG-
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCC---ce--EC---CEeeeCCHHHHhhcCCCCCEEEEecCHH-
Confidence 346888898 99999999999999998 56666665320 01 01 4778899999886321289999999995
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCch-hHHHHHHHHHHCCCeEEeCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~-~t~~~~~~l~~~gi~~i~~p 132 (505)
.+.+++++.... ....+| -.+++.+. +..++.+.+++.|+.+++.-
T Consensus 83 ~~~~~v~ea~~~-Gi~~vV-i~t~G~~~~~~~~l~~~A~~~gi~viGPN 129 (297)
T 2yv2_A 83 FAPDAVYEAVDA-GIRLVV-VITEGIPVHDTMRFVNYARQKGATIIGPN 129 (297)
T ss_dssp GHHHHHHHHHHT-TCSEEE-ECCCCCCHHHHHHHHHHHHHHTCEEECSS
T ss_pred HHHHHHHHHHHC-CCCEEE-EECCCCCHHHHHHHHHHHHHcCCEEEcCC
Confidence 667777766653 122234 34555544 34566677777899887643
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00052 Score=72.20 Aligned_cols=90 Identities=13% Similarity=0.045 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++++|+|+|.+|..+|+.|+..|.+|.++|+++.+..+....+ +. ..+++++... +|+|+.+......+
T Consensus 266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g-------~d-v~~lee~~~~---aDvVi~atG~~~vl 334 (488)
T 3ond_A 266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEG-------LQ-VLTLEDVVSE---ADIFVTTTGNKDII 334 (488)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCGGGTTTT---CSEEEECSSCSCSB
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhC-------Cc-cCCHHHHHHh---cCEEEeCCCChhhh
Confidence 4699999999999999999999999999999998877666543 22 3466776665 99999876543322
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
. ......++++.+|++.+...
T Consensus 335 ~---~e~l~~mk~gaiVvNaG~~~ 355 (488)
T 3ond_A 335 M---LDHMKKMKNNAIVCNIGHFD 355 (488)
T ss_dssp C---HHHHTTSCTTEEEEESSSTT
T ss_pred h---HHHHHhcCCCeEEEEcCCCC
Confidence 2 33566788999999998753
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0013 Score=65.91 Aligned_cols=113 Identities=15% Similarity=0.106 Sum_probs=71.9
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhCCCcEEEEeCCh--HHHHHHHHhhcccCCCCeeeeCCHHHHH-hhcCCCcEEEEE--
Q 010637 6 LSRIGLAGLAVMGQN-LALNVAEKGFPISVYNRTT--SKVDETLDRAHREGQLPLTGHYTPRDFV-LSIQRPRSVIIL-- 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~-lA~~La~~G~~V~v~dr~~--~~~~~l~~~~~~~g~~~i~~~~s~~e~v-~~l~~advIil~-- 79 (505)
+++|.|||+|.+|.+ +|+.|.+.|++|+++|+++ ...+.+.+.+. .+..-.+++++. .. +|+||.+
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi-----~v~~g~~~~~l~~~~---~d~vV~Spg 75 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGI-----DVYEGFDAAQLDEFK---ADVYVIGNV 75 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTC-----EEEESCCGGGGGSCC---CSEEEECTT
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCC-----EEECCCCHHHcCCCC---CCEEEECCC
Confidence 468999999999995 9999999999999999874 34556665542 133334555543 23 8999985
Q ss_pred cCCCch-HHHHHH---------HH-HhcCCC--CcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 80 VKAGSP-VDQTIA---------AL-SEHMSP--GDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 80 vp~~~~-v~~vl~---------~l-~~~l~~--g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
+|.+.+ +....+ ++ ...+.+ .-|-|-+||+...++.-+...++..|.
T Consensus 76 i~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~ 135 (326)
T 3eag_A 76 AKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGL 135 (326)
T ss_dssp CCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 444332 222221 22 222222 235666777776666666777777764
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00053 Score=68.81 Aligned_cols=128 Identities=12% Similarity=0.149 Sum_probs=74.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-------CCcEE-EEeCChHHH------HHHHHhhcccCCCCee-eeCCHHHHHhhcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK-------GFPIS-VYNRTTSKV------DETLDRAHREGQLPLT-GHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~-------G~~V~-v~dr~~~~~------~~l~~~~~~~g~~~i~-~~~s~~e~v~~l~ 71 (505)
.+|+|||+|.||+.++..|.++ +.+|. ++|++++.. +++.+.....+ .+. ...+..+++.. .
T Consensus 5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g--~~~~~~~d~~e~l~~-~ 81 (325)
T 3ing_A 5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTG--RISDRAFSGPEDLMG-E 81 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHS--CSCSSBCCSGGGGTT-S
T ss_pred EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcC--CCCcccCCHHHHhcC-C
Confidence 5899999999999999999874 34444 668876421 11111100000 011 01156666654 3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCc-hhHHHHHHHHHHCCCeE-EeCCCCCCH
Q 010637 72 RPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY-LNTERRIHEASQKGLLY-LGMGVSGGE 137 (505)
Q Consensus 72 ~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~-~~t~~~~~~l~~~gi~~-i~~pvsGg~ 137 (505)
..|+|+.|+|+....+...+.....|..|.-|+.+..... ....++.+..+++|..| +++.+.+|.
T Consensus 82 ~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~gi 149 (325)
T 3ing_A 82 AADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGGV 149 (325)
T ss_dssp CCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTS
T ss_pred CCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeecccC
Confidence 4799999999753334444455556778888887655322 22334455556667755 445555443
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00048 Score=68.78 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=62.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHh-C-CCcE-EEEeCChHH-HHHHHHhhcccCCCCee-eeCCHHHHHhh--cCCCcEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAE-K-GFPI-SVYNRTTSK-VDETLDRAHREGQLPLT-GHYTPRDFVLS--IQRPRSVII 78 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~-~-G~~V-~v~dr~~~~-~~~l~~~~~~~g~~~i~-~~~s~~e~v~~--l~~advIil 78 (505)
+.||||||+|.||..++..|.+ . +.++ .++|+++++ ...+.+.. ++. ...+.+++++. ....|+|++
T Consensus 4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~------g~~~~~~~~e~ll~~~~~~~iDvV~~ 77 (312)
T 1nvm_B 4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM------GVTTTYAGVEGLIKLPEFADIDFVFD 77 (312)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT------TCCEESSHHHHHHHSGGGGGEEEEEE
T ss_pred CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHc------CCCcccCCHHHHHhccCCCCCcEEEE
Confidence 4689999999999999999966 3 4554 578999887 55555432 122 34566777543 234799999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++|.... .+.....+.. .+|..|++.+..
T Consensus 78 atp~~~h-~~~a~~al~a-~~Gk~Vi~ekp~ 106 (312)
T 1nvm_B 78 ATSASAH-VQNEALLRQA-KPGIRLIDLTPA 106 (312)
T ss_dssp CSCHHHH-HHHHHHHHHH-CTTCEEEECSTT
T ss_pred CCChHHH-HHHHHHHHHh-CCCCEEEEcCcc
Confidence 9996433 3333333221 238888886654
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00031 Score=74.06 Aligned_cols=84 Identities=15% Similarity=0.263 Sum_probs=58.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~ 83 (505)
.|||-|+|+|.+|..+|+.|.+.||+|++.|+++++++.+.+..... -+.+..+-.++.+ .+++||+++.++.++
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~---~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D 79 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLR---VVNGHASHPDVLHEAGAQDADMLVAVTNTD 79 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCE---EEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcE---EEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence 46899999999999999999999999999999999998887642110 1222333333333 356799887666654
Q ss_pred chHHHHHHHH
Q 010637 84 SPVDQTIAAL 93 (505)
Q Consensus 84 ~~v~~vl~~l 93 (505)
.+.-++..+
T Consensus 80 -e~Nl~~~~~ 88 (461)
T 4g65_A 80 -ETNMAACQV 88 (461)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHHH
Confidence 444333333
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00045 Score=68.59 Aligned_cols=106 Identities=16% Similarity=0.048 Sum_probs=75.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcc---
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVV--- 402 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~--- 402 (505)
+.++.+|+++|.+.++.|++++|++.|.++. ++|.+.+.++|+.|. -+|+.++........ ..+...
T Consensus 167 G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~------Gld~~~~~~vl~~~~-~~s~~~~~~~p~~~~---~~~~~~~~~ 236 (300)
T 3obb_A 167 GAGQVAKVCNNQLLAVLMIGTAEAMALGVAN------GLEAKVLAEIMRRSS-GGNWALEVYNPWPGV---MENAPASRD 236 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHTST-TCCHHHHHCCCSTTT---STTSGGGGT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHhCc-ccchHHHhhccccch---hhhcccccc
Confidence 5789999999999999999999999998864 399999999999874 467766532110000 001111
Q ss_pred -cHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010637 403 -DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 403 -~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~ 443 (505)
++.|.- .-...+++.++..|.+.|+|+|....+...|..
T Consensus 237 ~~~~f~~--~l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~ 276 (300)
T 3obb_A 237 YSGGFMA--QLMAKDLGLAQEAAQASASSTPMGSLALSLYRL 276 (300)
T ss_dssp TCSSSBH--HHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred CCccchH--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 122222 223456788899999999999999999887754
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00018 Score=67.92 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=52.5
Q ss_pred CcEEEEcccHHHHHHHHH--HHhCCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQNLALN--VAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~--La~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.+|+|||+|.+|..++.. +...|++|. ++|.++++....... .++...++++++++. .|++++++|+.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~g------v~V~~~~dl~eli~~---~D~ViIAvPs~ 156 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGG------VPVYNLDDLEQHVKD---ESVAILTVPAV 156 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETT------EEEEEGGGHHHHCSS---CCEEEECSCHH
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcC------CeeechhhHHHHHHh---CCEEEEecCch
Confidence 589999999999999994 445688765 679999875432211 124455677777765 49999999985
Q ss_pred chHHHHHHHHHh
Q 010637 84 SPVDQTIAALSE 95 (505)
Q Consensus 84 ~~v~~vl~~l~~ 95 (505)
...++++.+..
T Consensus 157 -~~~ei~~~l~~ 167 (215)
T 2vt3_A 157 -AAQSITDRLVA 167 (215)
T ss_dssp -HHHHHHHHHHH
T ss_pred -hHHHHHHHHHH
Confidence 44566666654
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00075 Score=63.09 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=50.7
Q ss_pred CCc-EEEEc-ccHHHHHHHHHHH-hCCCcEEEEeCChH-HHHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCcEEE
Q 010637 6 LSR-IGLAG-LAVMGQNLALNVA-EKGFPISVYNRTTS-KVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~-IgIIG-lG~MG~~lA~~La-~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~----~~s~~e~v~~l~~advIi 77 (505)
||| |.|.| .|.+|..+++.|+ +.|++|.+.+|+++ +.+.+..... ++.. ..+.+++.+.++.+|+||
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~d~~~~~~~~~~~d~vv 78 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHE-----RVTVIEGSFQNPGXLEQAVTNAEVVF 78 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTST-----TEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCC-----ceEEEECCCCCHHHHHHHHcCCCEEE
Confidence 455 99999 5999999999999 89999999999998 7766642221 1221 123444444445588888
Q ss_pred EEcCC
Q 010637 78 ILVKA 82 (505)
Q Consensus 78 l~vp~ 82 (505)
.+...
T Consensus 79 ~~ag~ 83 (221)
T 3r6d_A 79 VGAME 83 (221)
T ss_dssp ESCCC
T ss_pred EcCCC
Confidence 87754
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0004 Score=66.90 Aligned_cols=109 Identities=14% Similarity=0.105 Sum_probs=72.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.|+|+++|+|.||+.+++. . ++++ .+|+ ++..++ ++..+++++++++. +|+|+.|-+. .
T Consensus 12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~gel----------gv~a~~d~d~lla~---pD~VVe~A~~-~ 71 (253)
T 1j5p_A 12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISKDI----------PGVVRLDEFQVPSD---VSTVVECASP-E 71 (253)
T ss_dssp CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCCCC----------SSSEECSSCCCCTT---CCEEEECSCH-H
T ss_pred cceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cccccc----------CceeeCCHHHHhhC---CCEEEECCCH-H
Confidence 4799999999999999998 4 8886 4677 332221 24567888888754 9999999754 2
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchh---HHHHHHHHHHCCCeE-EeCCCCCCH
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLN---TERRIHEASQKGLLY-LGMGVSGGE 137 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~---t~~~~~~l~~~gi~~-i~~pvsGg~ 137 (505)
++++ .+.+.|..|.-++-+|.+...+ .+++.+.+++.|..+ +..+..+|.
T Consensus 72 av~e---~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSGAi~Gl 125 (253)
T 1j5p_A 72 AVKE---YSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGGL 125 (253)
T ss_dssp HHHH---HHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTTCCCH
T ss_pred HHHH---HHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCCcccch
Confidence 4443 3556678888888887764222 234444555556554 445666663
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0022 Score=64.42 Aligned_cols=99 Identities=13% Similarity=0.105 Sum_probs=64.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCC----hHHHHH----HHHhh-cccCCCCeeeeCCHHHHHh
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRT----TSKVDE----TLDRA-HREGQLPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~-------~V~v~dr~----~~~~~~----l~~~~-~~~g~~~i~~~~s~~e~v~ 68 (505)
.|||+|+|+ |.+|.+++..|+..|+ +|.++|++ .++++. +.... ...+ ++....+..+.++
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~--~i~~~~~~~~al~ 82 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLA--GMTAHADPMTAFK 82 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEE--EEEEESSHHHHTT
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccC--cEEEecCcHHHhC
Confidence 468999997 9999999999999886 89999999 554443 22210 0000 3455567776666
Q ss_pred hcCCCcEEEEEcCCC----ch-----------HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 69 SIQRPRSVIILVKAG----SP-----------VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 69 ~l~~advIil~vp~~----~~-----------v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
. +|+||++...+ .. ++++++.+..+..+..+||..||-
T Consensus 83 ~---aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNP 135 (329)
T 1b8p_A 83 D---ADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNP 135 (329)
T ss_dssp T---CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred C---CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCc
Confidence 5 99999886322 11 233444555543356688888763
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0018 Score=64.56 Aligned_cols=118 Identities=16% Similarity=0.127 Sum_probs=76.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC---hHHHHHHHHhhcccCCCCeee--eCCH---HHHHhhcCCCcEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT---TSKVDETLDRAHREGQLPLTG--HYTP---RDFVLSIQRPRSVI 77 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~---~~~~~~l~~~~~~~g~~~i~~--~~s~---~e~v~~l~~advIi 77 (505)
.++.|+|+|-+|++++..|++.|. +|++++|+ .++.+++.++........+.. ..+. .+.+.. +|+||
T Consensus 149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~---~DiII 225 (312)
T 3t4e_A 149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALAS---ADILT 225 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHH---CSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccC---ceEEE
Confidence 579999999999999999999998 89999999 888887765432110001222 2343 344455 99999
Q ss_pred EEcCCCchHHHHHHHH---HhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 78 ILVKAGSPVDQTIAAL---SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l---~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
-++|.+..-..- ..+ ...+.++.+|+|.--.. ..| .+.+..+++|...++
T Consensus 226 NaTp~Gm~~~~~-~~~~~~~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~~ 278 (312)
T 3t4e_A 226 NGTKVGMKPLEN-ESLIGDVSLLRPELLVTECVYNP-HMT-KLLQQAQQAGCKTID 278 (312)
T ss_dssp ECSSTTSTTSTT-CCSCCCGGGSCTTCEEEECCCSS-SSC-HHHHHHHHTTCEEEC
T ss_pred ECCcCCCCCCCC-CcccCCHHHcCCCCEEEEeccCC-CCC-HHHHHHHHCCCeEEC
Confidence 999987410000 011 13467889999986543 334 344555677766543
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0035 Score=62.18 Aligned_cols=99 Identities=10% Similarity=0.110 Sum_probs=59.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCC--cEEEEeC--ChHHHHHHHHhhccc--CCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGF--PISVYNR--TTSKVDETLDRAHRE--GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~--~V~v~dr--~~~~~~~l~~~~~~~--g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|||+|+| +|.+|.+++..|+..|+ ++.++|+ ++++++......... -..++.+..+..+.. +.+|+||++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~---~~aDvVi~~ 77 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDT---AGSDVVVIT 77 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGG---TTCSEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHh---CCCCEEEEc
Confidence 5899999 99999999999998886 6889999 876654322111000 000122222223333 449999998
Q ss_pred cCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..... .++++++.+..+ .++.+|+..||-
T Consensus 78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SNP 121 (303)
T 1o6z_A 78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNP 121 (303)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCCh
Confidence 74321 233344455544 456677766554
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00018 Score=71.87 Aligned_cols=93 Identities=13% Similarity=0.052 Sum_probs=61.5
Q ss_pred CcEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee---e--CCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVM-GQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG---H--YTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~M-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~---~--~s~~e~v~~l~~advIil~v 80 (505)
.++.|||.|.| |..+|..|+..|.+|+++||+..+............ ...+. + .++++.+.. +|+||.++
T Consensus 178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~-~~~t~~~~t~~~~L~e~l~~---ADIVIsAt 253 (320)
T 1edz_A 178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNK-HHVEDLGEYSEDLLKKCSLD---SDVVITGV 253 (320)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCC-CEEEEEEECCHHHHHHHHHH---CSEEEECC
T ss_pred CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhc-ccccccccccHhHHHHHhcc---CCEEEECC
Confidence 57999999976 999999999999999999998443211111110000 00111 1 456666666 99999999
Q ss_pred CCCch-HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 81 KAGSP-VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 81 p~~~~-v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+.... +. ...+++|.+|||.+..
T Consensus 254 g~p~~vI~------~e~vk~GavVIDVgi~ 277 (320)
T 1edz_A 254 PSENYKFP------TEYIKEGAVCINFACT 277 (320)
T ss_dssp CCTTCCBC------TTTSCTTEEEEECSSS
T ss_pred CCCcceeC------HHHcCCCeEEEEcCCC
Confidence 87532 11 1236789999999775
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0072 Score=60.17 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=59.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhC-C--CcEEEEeCChH---HHHHHHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEE
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEK-G--FPISVYNRTTS---KVDETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~-G--~~V~v~dr~~~---~~~~l~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIi 77 (505)
|||+||| +|.+|.+++..|+.. + .++.++|+++. ...++... ... .++... ++..+..+. +|+||
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~-~~~--~~v~~~~~~~~~~~~~~---aDivi 74 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHI-PTA--VKIKGFSGEDATPALEG---ADVVL 74 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTS-CSS--EEEEEECSSCCHHHHTT---CSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCC-CCC--ceEEEecCCCcHHHhCC---CCEEE
Confidence 5899999 899999999999875 5 48999999871 12222221 100 012321 233344444 99999
Q ss_pred EEcCCC----c-----------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 78 ILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 78 l~vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
++.... . .++++.+.+..+ .++.+|+..||-.
T Consensus 75 i~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPv 121 (312)
T 3hhp_A 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNPV 121 (312)
T ss_dssp ECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCH
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEecCcc
Confidence 987432 1 123333455555 4667888887643
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0006 Score=68.67 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhC------C--CcE-EEEeCChHHHHH------HHHhhcccCCCCe-eeeC---CHHHHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK------G--FPI-SVYNRTTSKVDE------TLDRAHREGQLPL-TGHY---TPRDFV 67 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~------G--~~V-~v~dr~~~~~~~------l~~~~~~~g~~~i-~~~~---s~~e~v 67 (505)
++|||||+|.||..++..|.+. | .+| .++||++++.+. +.+..... .+ ..++ ++++++
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~ll 83 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKG---SLDSLEYESISASEAL 83 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTT---CGGGCCSEECCHHHHH
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccC---CcccccCCCCCHHHHh
Confidence 5899999999999999999764 2 455 477988765432 12111000 12 1334 899988
Q ss_pred hhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCC-chhHHHHHHHHHHCCCeE
Q 010637 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIHEASQKGLLY 128 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~-~~~t~~~~~~l~~~gi~~ 128 (505)
. ...|+|+.|+|.....+...+.....|..|+-|+.+.... .....++.+..+++|+.|
T Consensus 84 -~-~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~ 143 (331)
T 3c8m_A 84 -A-RDFDIVVDATPASADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRRI 143 (331)
T ss_dssp -H-SSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred -C-CCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEE
Confidence 4 3489999999984101112223334466788887653211 122344455555667654
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0017 Score=63.15 Aligned_cols=73 Identities=21% Similarity=0.386 Sum_probs=58.4
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG-~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||.| .+|.++|..|...|.+|++++++. .++++.+.. +|+||.+++....
T Consensus 151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 206 (276)
T 3ngx_A 151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT---------------------KDIGSMTRS---SKIVVVAVGRPGF 206 (276)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SCHHHHHHH---SSEEEECSSCTTC
T ss_pred CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc---------------------ccHHHhhcc---CCEEEECCCCCcc
Confidence 479999997 589999999999999999998642 356677777 9999999987543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+. ...+++|.+|||.+..
T Consensus 207 I~------~~~vk~GavVIDvgi~ 224 (276)
T 3ngx_A 207 LN------REMVTPGSVVIDVGIN 224 (276)
T ss_dssp BC------GGGCCTTCEEEECCCE
T ss_pred cc------HhhccCCcEEEEeccC
Confidence 22 1357899999999875
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00097 Score=63.15 Aligned_cols=71 Identities=10% Similarity=0.138 Sum_probs=50.4
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~----~~s~~e~v~~l~~advIil~ 79 (505)
|++|-|.| .|.+|..++..|++.| ++|.+++|++++.+.+... ++.. ..+.+++.+.++.+|+||.+
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~-------~~~~~~~Dl~d~~~~~~~~~~~D~vv~~ 95 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPT-------NSQIIMGDVLNHAALKQAMQGQDIVYAN 95 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCT-------TEEEEECCTTCHHHHHHHHTTCSEEEEE
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccC-------CcEEEEecCCCHHHHHHHhcCCCEEEEc
Confidence 45688998 6999999999999999 9999999998865433221 1221 13445554545568999887
Q ss_pred cCCC
Q 010637 80 VKAG 83 (505)
Q Consensus 80 vp~~ 83 (505)
....
T Consensus 96 a~~~ 99 (236)
T 3qvo_A 96 LTGE 99 (236)
T ss_dssp CCST
T ss_pred CCCC
Confidence 7653
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0033 Score=58.11 Aligned_cols=69 Identities=14% Similarity=0.248 Sum_probs=48.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHH-HhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF-VLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~-v~~l~~advIil~vp~ 82 (505)
|||.|+| .|.+|..++..|+++|++|.+.+|++++.+.+. .+. .+. ..|+.+. .+.+..+|+||.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~-----~~~-~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDI-----NIL-QKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSS-----EEE-ECCGGGCCHHHHTTCSEEEECCCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCC-----eEE-eccccChhhhhhcCCCEEEECCcC
Confidence 5799999 599999999999999999999999998876654 111 111 1122110 0334459999998754
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0064 Score=63.67 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=68.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh----HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCC-CcEEEEE--
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT----SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQR-PRSVIIL-- 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~----~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~-advIil~-- 79 (505)
++|.|||+|..|.+.|+.|.+.|++|+++|+++ ...+.+.+.+. .+..-..++++.+ . +|+||.+
T Consensus 10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi-----~~~~g~~~~~~~~---~~~d~vv~spg 81 (451)
T 3lk7_A 10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGI-----KVVCGSHPLELLD---EDFCYMIKNPG 81 (451)
T ss_dssp CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTC-----EEEESCCCGGGGG---SCEEEEEECTT
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCC-----EEEECCChHHhhc---CCCCEEEECCc
Confidence 579999999999999999999999999999864 23455555432 1232233333332 2 6888876
Q ss_pred cCCCch-HHHHHH---------HHHhcCCCCc-EEEecCCCCchhHHHHHHHHHHCCCe
Q 010637 80 VKAGSP-VDQTIA---------ALSEHMSPGD-CIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 80 vp~~~~-v~~vl~---------~l~~~l~~g~-iIId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+|.+.+ +....+ +++..+.+.. |-|.+|++...++.-+...+...|..
T Consensus 82 i~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~ 140 (451)
T 3lk7_A 82 IPYNNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQR 140 (451)
T ss_dssp SCTTSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTCC
T ss_pred CCCCChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence 444332 222111 2222222334 45556666655565566777777753
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0033 Score=63.49 Aligned_cols=97 Identities=11% Similarity=-0.009 Sum_probs=59.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhh--cccCC------------CCeeeeCCHHHHHhh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRA--HREGQ------------LPLTGHYTPRDFVLS 69 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~--~~~g~------------~~i~~~~s~~e~v~~ 69 (505)
|+||||+|+|.+|+.+++.|.++ +++|. +.|++++....+.+.. ...|. ..+.+..++.++...
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~ 81 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIED 81 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGG
T ss_pred ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccC
Confidence 46999999999999999999887 56755 5576666555444331 00000 012222233344334
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 70 IQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 70 l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+|+|+.|.|.+.. ....+ ..+++.|..||+.+.
T Consensus 82 ---vDiV~eatg~~~s-~~~a~--~~~l~aG~~VI~sap 114 (343)
T 2yyy_A 82 ---ADIVVDGAPKKIG-KQNLE--NIYKPHKVKAILQGG 114 (343)
T ss_dssp ---CSEEEECCCTTHH-HHHHH--HTTTTTTCEEEECTT
T ss_pred ---CCEEEECCCcccc-HHHHH--HHHHHCCCEEEECCC
Confidence 8999999988632 22222 356778888887443
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.04 Score=53.22 Aligned_cols=151 Identities=13% Similarity=0.073 Sum_probs=101.2
Q ss_pred CeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 56 PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 56 ~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
++.++++..|+++. +|++|+-+|-|...-.+++.+++++++|.||.++.|.++.......+.+..+.+.+.....-
T Consensus 128 GVkVtsDD~EAvk~---AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCTipp~~ly~~le~l~R~DvgIsS~HPa- 203 (358)
T 2b0j_A 128 GLKVTSDDREAVEG---ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPG- 203 (358)
T ss_dssp TCEEESCHHHHHTT---CSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCS-
T ss_pred CcEeecchHHHhcC---CCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccCCCHHHHHHHHHHhCcccCCeeccCCC-
Confidence 57888899999887 99999999999878889999999999999999999998877666666655554554443211
Q ss_pred CHHHhhcCCccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhC
Q 010637 136 GEEGARHGPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG 213 (505)
Q Consensus 136 g~~~a~~G~~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g 213 (505)
+.++. .|.++..- .++|..+++-+|.+..+ +..+.+-..-.+...-|. ..+.+...+.+.+-+....+..
T Consensus 204 aVPgt-~Gq~~~g~~yAtEEqIeklveLaksa~------k~ay~vPAdl~SpV~DMg-s~vTAv~~AGiL~Y~~~vtkIl 275 (358)
T 2b0j_A 204 CVPEM-KGQVYIAEGYASEEAVNKLYEIGKIAR------GKAFKMPANLIGPVCDMC-SAVTATVYAGLLAYRDAVTKIL 275 (358)
T ss_dssp SCTTT-CCCEEEEESSSCHHHHHHHHHHHHHHH------SCEEEEEHHHHHHHHSTT-HHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCC-CCccccccccCCHHHHHHHHHHHHHhC------CCeEecchhhccchhhhH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 11222 44433222 38899999999999999 666666322222222222 2233345556666666666655
Q ss_pred CCCHH
Q 010637 214 GLSNA 218 (505)
Q Consensus 214 ~l~~~ 218 (505)
|.+.+
T Consensus 276 gAP~~ 280 (358)
T 2b0j_A 276 GAPAD 280 (358)
T ss_dssp CCCHH
T ss_pred cCcHH
Confidence 45543
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.005 Score=59.26 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=31.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~ 39 (505)
.+|.|||+|.+|..+|.+|++.|. +|+++|++.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 579999999999999999999997 899999987
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0015 Score=55.98 Aligned_cols=102 Identities=13% Similarity=0.017 Sum_probs=74.8
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGl----G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|+|||+ +..|..+.++|.+.||+|+-.|...+.+ . +.....|+.|+-+ .|++++++|+
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i---------~---G~~~y~sl~dlp~----vDlavi~~p~ 68 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV---------L---GKTIINERPVIEG----VDTVTLYINP 68 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE---------T---TEECBCSCCCCTT----CCEEEECSCH
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC---------C---CeeccCChHHCCC----CCEEEEEeCH
Confidence 47999998 6799999999999999998888764321 1 3556677766543 7999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+.+.++++++...--+ .+|+..+.. .+++.+.+++.|+++++
T Consensus 69 -~~v~~~v~e~~~~g~k-~v~~~~G~~----~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 69 -QNQLSEYNYILSLKPK-RVIFNPGTE----NEELEEILSENGIEPVI 110 (122)
T ss_dssp -HHHGGGHHHHHHHCCS-EEEECTTCC----CHHHHHHHHHTTCEEEE
T ss_pred -HHHHHHHHHHHhcCCC-EEEECCCCC----hHHHHHHHHHcCCeEEC
Confidence 4778888877764333 466654432 34677777888999885
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0018 Score=65.91 Aligned_cols=101 Identities=13% Similarity=0.053 Sum_probs=68.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC----hHH----HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT----TSK----VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~----~~~----~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
..||-|+|+|.+|.++|+.|...|. +|+++||+ .++ +..+.+.....-+ ......+++|++.. +|++
T Consensus 192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~-~~~~~~~L~eav~~---ADVl 267 (388)
T 1vl6_A 192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITN-PERLSGDLETALEG---ADFF 267 (388)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSC-TTCCCSCHHHHHTT---CSEE
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhh-ccCchhhHHHHHcc---CCEE
Confidence 3589999999999999999999998 89999998 554 2222222111100 11224578888877 9998
Q ss_pred EEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhH
Q 010637 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (505)
|-+..++... +++...+.++.+|+++||-.|+-+
T Consensus 268 IG~Sap~l~t----~emVk~Ma~~pIIfalSNPt~E~~ 301 (388)
T 1vl6_A 268 IGVSRGNILK----PEWIKKMSRKPVIFALANPVPEID 301 (388)
T ss_dssp EECSCSSCSC----HHHHTTSCSSCEEEECCSSSCSSC
T ss_pred EEeCCCCccC----HHHHHhcCCCCEEEEcCCCCCCCC
Confidence 8876543323 344444667889999999765433
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.017 Score=56.97 Aligned_cols=103 Identities=11% Similarity=0.053 Sum_probs=76.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
..++.+|.+.|.+.+..+..++|++.+.++. ++|.+++.++++.| ..+|++++.....+-+.+... .
T Consensus 173 g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~------~ 239 (303)
T 3g0o_A 173 GAGSTVKIIHQLLAGVHIAAAAEAMALAARA------GIPLDVMYDVVTHA-AGNSWMFENRMQHVVDGDYTP------R 239 (303)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTS-TTCCHHHHHHHHHHHTTCCCC------S
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-ccCCHHHHhhhHHHhcCCCCC------C
Confidence 4678999999999999999999999988753 39999999999987 457888776544433322111 1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010637 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~ 443 (505)
| .+.....+++.++..|-+.|+|+|.+.++...|..
T Consensus 240 ~--~~~~~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~ 275 (303)
T 3g0o_A 240 S--AVDIFVKDLGLVADTAKALRFPLPLASTALNMFTS 275 (303)
T ss_dssp S--BHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred C--chHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 1 11223445678999999999999999998886654
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0025 Score=64.21 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=60.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhc--ccC----------CCCeeeeCCHHHHHhhcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAH--REG----------QLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~--~~g----------~~~i~~~~s~~e~v~~l~~ 72 (505)
+||||+|+|.||+.+++.|.++ +++|. +.++++.....+..... ..+ +.++.+..+++++...
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~--- 78 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDE--- 78 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHT---
T ss_pred eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcC---
Confidence 5899999999999999999875 45654 56887665544443210 000 0012222356666655
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+|+||.|+|.+.. .+.....+ ..|..|||.+..
T Consensus 79 vDvV~~atp~~~~-~~~a~~~l---~aG~~VId~sp~ 111 (337)
T 1cf2_P 79 ADIVIDCTPEGIG-AKNLKMYK---EKGIKAIFQGGE 111 (337)
T ss_dssp CSEEEECCSTTHH-HHHHHHHH---HHTCCEEECTTS
T ss_pred CCEEEECCCchhh-HHHHHHHH---HcCCEEEEecCC
Confidence 9999999999743 33444333 346668887776
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.002 Score=60.09 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=50.5
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCcEEEEE
Q 010637 5 ALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 5 ~~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~----~~s~~e~v~~l~~advIil~ 79 (505)
+||+|.|.| .|.+|..++..|+++|++|.+.+|++++.+.+.. ++.. ..+.+++.+.++.+|+||.+
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ 74 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENE--------HLKVKKADVSSLDEVCEVCKGADAVISA 74 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCT--------TEEEECCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccC--------ceEEEEecCCCHHHHHHHhcCCCEEEEe
Confidence 357899999 5999999999999999999999999876433211 1221 12445554555568999888
Q ss_pred cCC
Q 010637 80 VKA 82 (505)
Q Consensus 80 vp~ 82 (505)
...
T Consensus 75 a~~ 77 (227)
T 3dhn_A 75 FNP 77 (227)
T ss_dssp CCC
T ss_pred CcC
Confidence 744
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0032 Score=63.07 Aligned_cols=111 Identities=11% Similarity=0.085 Sum_probs=70.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeee-CCHHHHHh-hcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVL-SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~v~-~l~~advIil~vp~~~ 84 (505)
++|-|+|+|.+|..++..|.+.|+ |.+.|+++++++ +.+.+..- +.+. .+++.+.+ .++++|.++++++++.
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~----i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~ 189 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANF----VHGDPTRVSDLEKANVRGARAVIVDLESDS 189 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEE----EESCTTSHHHHHHTCSTTEEEEEECCSSHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEE----EEeCCCCHHHHHhcChhhccEEEEcCCccH
Confidence 469999999999999999999999 999999999988 66543210 1222 23333332 3667999999998753
Q ss_pred hHHHHHHHHHhcCCCC-cEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 85 PVDQTIAALSEHMSPG-DCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g-~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
..-.+ -.....+.+. .++.-..+. .. .+.+...|+..+=
T Consensus 190 ~n~~~-~~~ar~~~~~~~iiar~~~~--~~----~~~l~~~G~d~vi 229 (336)
T 1lnq_A 190 ETIHC-ILGIRKIDESVRIIAEAERY--EN----IEQLRMAGADQVI 229 (336)
T ss_dssp HHHHH-HHHHHTTCTTSEEEEECSSG--GG----HHHHHHTTCSEEE
T ss_pred HHHHH-HHHHHHHCCCCeEEEEECCH--HH----HHHHHHcCCCEEE
Confidence 22222 3333445554 566655443 22 2334456766543
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0048 Score=57.34 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=48.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHH--HHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRD--FVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e--~v~~l~~advIil~vp~ 82 (505)
|||.|.|. |.+|..++..|++.|++|.+.+|++++...+...+.. +. ..|+.+ . +.+..+|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~-----~~-~~D~~d~~~-~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVA-----TL-VKEPLVLTE-ADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSE-----EE-ECCGGGCCH-HHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCce-----EE-ecccccccH-hhcccCCEEEECCcc
Confidence 57999997 9999999999999999999999999887765432211 11 112211 1 333458999988744
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.027 Score=53.97 Aligned_cols=98 Identities=15% Similarity=0.102 Sum_probs=59.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|||+|+|+ |.||+.++..+.+. |++|. ++|++. +++++.. ..+|+||-+.++.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~----------------------dl~~~~~--~~~DvvIDfT~p~ 56 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGD----------------------PLSLLTD--GNTEVVIDFTHPD 56 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTC----------------------CTHHHHH--TTCCEEEECSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCC----------------------CHHHHhc--cCCcEEEEccChH
Confidence 48999996 99999999998866 89877 556541 3344443 1289999777554
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHH-HHHHHHHC-CCeEEeCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTER-RIHEASQK-GLLYLGMG 132 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~-~~~~l~~~-gi~~i~~p 132 (505)
.+.+.+... +..|.-+|-++|+......+ +.+..++. ++..+-+|
T Consensus 57 -a~~~~~~~a---~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~ 103 (245)
T 1p9l_A 57 -VVMGNLEFL---IDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAP 103 (245)
T ss_dssp -THHHHHHHH---HHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECS
T ss_pred -HHHHHHHHH---HHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEEC
Confidence 445444433 34566666667765444333 33333322 55444444
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.002 Score=65.23 Aligned_cols=96 Identities=7% Similarity=0.145 Sum_probs=58.0
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++||+|+| .|.+|+.+.+.|.++.. +|....+..+.-.++.+.... .+...+. ..++++ +..+|+||+|+|.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~-~~~~~~----~~~vDvV~~a~g~ 78 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLK-FVPPEK----LEPADILVLALPH 78 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCB-CBCGGG----CCCCSEEEECCCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccc-ccchhH----hcCCCEEEEcCCc
Confidence 46899999 69999999999998764 766655433221111111100 0000112 223332 3459999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ..+.+..+ +..|..|||.|+..
T Consensus 79 ~~-s~~~a~~~---~~aG~~VId~Sa~~ 102 (345)
T 2ozp_A 79 GV-FAREFDRY---SALAPVLVDLSADF 102 (345)
T ss_dssp TH-HHHTHHHH---HTTCSEEEECSSTT
T ss_pred HH-HHHHHHHH---HHCCCEEEEcCccc
Confidence 74 34444443 45788999999865
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0098 Score=59.94 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=60.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEE-EEeCChHHHHHHHHhhccc---C--------CCCeeeeCCHHHHHhhcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG-FPIS-VYNRTTSKVDETLDRAHRE---G--------QLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G-~~V~-v~dr~~~~~~~l~~~~~~~---g--------~~~i~~~~s~~e~v~~l~~a 73 (505)
.||||+|+|.||+.+++.|.++. .+|. +.|++++....+....... + ..++....+++++.+. +
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~---v 78 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKT---S 78 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHH---C
T ss_pred eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcC---C
Confidence 58999999999999999998764 4554 6788876655554431100 0 0011122344455445 8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
|+||.|+|... ..+..... +..|..+||.|..
T Consensus 79 DvV~~aTp~~~-s~~~a~~~---~~aG~kvV~~sa~ 110 (340)
T 1b7g_O 79 DIVVDTTPNGV-GAQYKPIY---LQLQRNAIFQGGE 110 (340)
T ss_dssp SEEEECCSTTH-HHHHHHHH---HHTTCEEEECTTS
T ss_pred CEEEECCCCch-hHHHHHHH---HHcCCeEEEeCCC
Confidence 99999999873 33333333 3467778887765
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0029 Score=62.31 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=56.5
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHH--HHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR--DFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~-MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~--e~v~~l~~advIil~vp~~ 83 (505)
.++.|||.|. +|.++|..|...|.+|+++++... +++ +.+.. +|+||.+++..
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~---------------------~l~l~~~~~~---ADIVI~Avg~p 221 (300)
T 4a26_A 166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS---------------------TEDMIDYLRT---ADIVIAAMGQP 221 (300)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC---------------------HHHHHHHHHT---CSEEEECSCCT
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC---------------------Cchhhhhhcc---CCEEEECCCCC
Confidence 4799999876 899999999999999999987432 222 45555 99999999875
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..+.. ..+++|.+|||.+..
T Consensus 222 ~~I~~------~~vk~GavVIDvgi~ 241 (300)
T 4a26_A 222 GYVKG------EWIKEGAAVVDVGTT 241 (300)
T ss_dssp TCBCG------GGSCTTCEEEECCCE
T ss_pred CCCcH------HhcCCCcEEEEEecc
Confidence 33221 347899999999764
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.002 Score=64.86 Aligned_cols=98 Identities=12% Similarity=0.132 Sum_probs=59.1
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhC-CCcEEEEeCCh---HHHHHHHHhhcc-cCCCCeeeeC--CHHHHHhhcCCCcEEE
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEK-GFPISVYNRTT---SKVDETLDRAHR-EGQLPLTGHY--TPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~-G~~V~v~dr~~---~~~~~l~~~~~~-~g~~~i~~~~--s~~e~v~~l~~advIi 77 (505)
|+||+|+| .|.+|..|.+.|.++ .+++.....+. ..-+.+.+.... .+.....+.. +.+++.+. +|+||
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~---~Dvvf 80 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPG---VDVVF 80 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTT---CSEEE
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcC---CCEEE
Confidence 46999999 599999999999985 45776553322 211111111110 0000122222 44454344 99999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+|+|.+ ...+....+ +..|..|||.|+-+
T Consensus 81 ~a~p~~-~s~~~~~~~---~~~g~~vIDlSa~f 109 (337)
T 3dr3_A 81 LATAHE-VSHDLAPQF---LEAGCVVFDLSGAF 109 (337)
T ss_dssp ECSCHH-HHHHHHHHH---HHTTCEEEECSSTT
T ss_pred ECCChH-HHHHHHHHH---HHCCCEEEEcCCcc
Confidence 999986 345455544 34789999999875
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.024 Score=56.34 Aligned_cols=103 Identities=12% Similarity=0.120 Sum_probs=79.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
..++.+|.+.|.+.++.+..++|++.+.++. ++|.+++.++++.| ..+|++++.....+.+.+.. +.
T Consensus 193 g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~l~~~~~------~g 259 (320)
T 4dll_A 193 GSGQLTKLANQMIVGITIGAVAEALLFATKG------GADMAKVKEAITGG-FADSRVLQLHGQRMVERDFA------PR 259 (320)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SCCHHHHHHHHTTS-TTCBHHHHTHHHHHHTTCCC------CS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHcc-cccCHHHHHhhhhhccCCCC------Cc
Confidence 4678999999999999999999999999853 39999999999988 36788888765554433211 11
Q ss_pred HHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010637 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~ 443 (505)
|. +.-...+++.++..|-+.|+|+|...++...|..
T Consensus 260 f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 295 (320)
T 4dll_A 260 AR--LSIQLKDMRNALATAQEIGFDAPITGLFEQLYAE 295 (320)
T ss_dssp SB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred cc--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 21 1223456678999999999999999999886664
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.015 Score=56.77 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=78.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
..++.+|.+.|.+.++.+..++|++.+.++. ++|.+++.++++.| ...|++++.....+.+.+... .
T Consensus 165 g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~------~ 231 (287)
T 3pef_A 165 GKGAEMKLVVNMVMGGMMACFCEGLALGEKA------GLATDAILDVIGAG-AMANPMFALKGGLIRDRNFAP------A 231 (287)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHS-TTCCHHHHHHHHHHHTTCCCC------S
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-ccccHHHHHHhhhhhcCCCCC------C
Confidence 4678999999999999999999999998853 39999999999987 357888877655554432111 1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010637 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~ 443 (505)
|. +......++.++..|-+.|+|+|.+.++...|..
T Consensus 232 ~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 267 (287)
T 3pef_A 232 FP--LKHMQKDLRLAVALGDRVGQPLVASAAANELFKG 267 (287)
T ss_dssp SB--HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred Cc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 21 2233445799999999999999999998876654
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0043 Score=58.43 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=51.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc-ccCCCCeeeeCCH-HHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-REGQLPLTGHYTP-RDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~-~e~v~~l~~advIil~vp~ 82 (505)
.|+|-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+...+. . +. ..|+ +++.+.+.++|+||.+...
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~-----~~-~~Dl~~~~~~~~~~~D~vi~~ag~ 94 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASD-----IV-VANLEEDFSHAFASIDAVVFAAGS 94 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSE-----EE-ECCTTSCCGGGGTTCSEEEECCCC
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCce-----EE-EcccHHHHHHHHcCCCEEEECCCC
Confidence 468999997 999999999999999999999999998887765432 1 11 1122 3333344458888887754
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00061 Score=64.10 Aligned_cols=80 Identities=14% Similarity=0.136 Sum_probs=54.9
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAE-KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~-~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|+|||+|.+|..++..+.. .|+++. ++|.++++....... ..+...++++++++. ..|.|++|+|..
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~g~~i~g------v~V~~~~dl~ell~~--~ID~ViIA~Ps~- 151 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRG------GVIEHVDLLPQRVPG--RIEIALLTVPRE- 151 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETT------EEEEEGGGHHHHSTT--TCCEEEECSCHH-
T ss_pred CEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHHhhhhcC------CeeecHHhHHHHHHc--CCCEEEEeCCch-
Confidence 579999999999999986322 277655 679998875432211 124456677777764 489999999985
Q ss_pred hHHHHHHHHHh
Q 010637 85 PVDQTIAALSE 95 (505)
Q Consensus 85 ~v~~vl~~l~~ 95 (505)
...++.+.+..
T Consensus 152 ~~~ei~~~l~~ 162 (211)
T 2dt5_A 152 AAQKAADLLVA 162 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 44556555543
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0049 Score=60.23 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=57.1
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~-MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||.|. +|.++|..|...|.+|++++++. .++++.+.. +|+||.+++....
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 217 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------------------TDLKSHTTK---ADILIVAVGKPNF 217 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SSHHHHHTT---CSEEEECCCCTTC
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHhccc---CCEEEECCCCCCC
Confidence 4799999877 79999999999999999997642 245566665 9999999987533
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+. ...+++|.+|||.+..
T Consensus 218 I~------~~~vk~GavVIDvgi~ 235 (285)
T 3l07_A 218 IT------ADMVKEGAVVIDVGIN 235 (285)
T ss_dssp BC------GGGSCTTCEEEECCCE
T ss_pred CC------HHHcCCCcEEEEeccc
Confidence 22 1357899999999764
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0026 Score=64.57 Aligned_cols=94 Identities=12% Similarity=0.236 Sum_probs=57.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCC-CcEEEEeCChH----HHHHHHHh--------hcccCCCCeeeeCCHHHHHh-hcC
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKG-FPISVYNRTTS----KVDETLDR--------AHREGQLPLTGHYTPRDFVL-SIQ 71 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G-~~V~v~dr~~~----~~~~l~~~--------~~~~g~~~i~~~~s~~e~v~-~l~ 71 (505)
+||+|+| .|.+|..+++.|.++. ++|...++++. ..+..... +... ..+. ..+++++.+ .
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~-- 83 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKD--MVVI-PTDPKHEEFED-- 83 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHT--CBCE-ESCTTSGGGTT--
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCcee--eEEE-eCCHHHHhcCC--
Confidence 5899999 8999999999998875 57766643321 12211100 0000 0111 124555444 4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 72 RPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 72 ~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+|+||+|+|.+ ...+.+..+. ..|..|||.++.+
T Consensus 84 -~DvV~~atp~~-~~~~~a~~~~---~aG~~VId~s~~~ 117 (354)
T 1ys4_A 84 -VDIVFSALPSD-LAKKFEPEFA---KEGKLIFSNASAY 117 (354)
T ss_dssp -CCEEEECCCHH-HHHHHHHHHH---HTTCEEEECCSTT
T ss_pred -CCEEEECCCch-HHHHHHHHHH---HCCCEEEECCchh
Confidence 99999999986 3444544443 4688899998763
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.011 Score=57.95 Aligned_cols=73 Identities=19% Similarity=0.145 Sum_probs=49.0
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCC-----hHHHHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCcE
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRT-----TSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRS 75 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~-----~~~~~~l~~~~~~~g~~~i~~----~~s~~e~v~~l~~adv 75 (505)
+++|.|+|. |.+|..++..|++.|++|.+.+|+ +++.+.+..... . ++.. ..+++++.+.++.+|+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~-~---~~~~~~~D~~d~~~l~~~~~~~d~ 79 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQ-L---GAKLIEASLDDHQRLVDALKQVDV 79 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHT-T---TCEEECCCSSCHHHHHHHHTTCSE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHh-C---CeEEEeCCCCCHHHHHHHHhCCCE
Confidence 468999995 999999999999999999999998 445443321100 0 1221 1344555555555888
Q ss_pred EEEEcCC
Q 010637 76 VIILVKA 82 (505)
Q Consensus 76 Iil~vp~ 82 (505)
||.+...
T Consensus 80 vi~~a~~ 86 (313)
T 1qyd_A 80 VISALAG 86 (313)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 8877654
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0053 Score=59.98 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=57.4
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~-MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||.|. +|.++|..|...|.+|++++++. .++++.+.. +|+||.+++....
T Consensus 161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 216 (285)
T 3p2o_A 161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLSLYTRQ---ADLIIVAAGCVNL 216 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SCHHHHHTT---CSEEEECSSCTTC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHHhhc---CCEEEECCCCCCc
Confidence 5799999876 79999999999999999998642 245566665 9999999987533
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+. ...+++|.+|||.+..
T Consensus 217 I~------~~~vk~GavVIDVgi~ 234 (285)
T 3p2o_A 217 LR------SDMVKEGVIVVDVGIN 234 (285)
T ss_dssp BC------GGGSCTTEEEEECCCE
T ss_pred CC------HHHcCCCeEEEEeccC
Confidence 22 1357899999999764
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0014 Score=66.00 Aligned_cols=84 Identities=17% Similarity=0.122 Sum_probs=57.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC---------CcE-EEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG---------FPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G---------~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
++|||||+|.||..++..|.++. .+| .++||++++.+.+ . ....++|+++++ . .|+|
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~-----~----~~~~~~d~~~ll-~---iDvV 70 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAI-----P----QELLRAEPFDLL-E---ADLV 70 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSS-----C----GGGEESSCCCCT-T---CSEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhcc-----C----cccccCCHHHHh-C---CCEE
Confidence 58999999999999999998763 454 4779987643221 0 013566777777 4 8999
Q ss_pred EEEcCCCchHHHHHHHHHhcCCCCcEEEec
Q 010637 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDG 106 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~ 106 (505)
+.|+|......+.+. ..|..|+-|+..
T Consensus 71 ve~t~~~~~a~~~~~---~AL~aGKhVVta 97 (332)
T 2ejw_A 71 VEAMGGVEAPLRLVL---PALEAGIPLITA 97 (332)
T ss_dssp EECCCCSHHHHHHHH---HHHHTTCCEEEC
T ss_pred EECCCCcHHHHHHHH---HHHHcCCeEEEC
Confidence 999998644343433 345567767653
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00099 Score=62.55 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=55.7
Q ss_pred CcEEEEcccHHHHHHHHHH--HhCCCcEE-EEeCChH-HHHH-HHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGLAVMGQNLALNV--AEKGFPIS-VYNRTTS-KVDE-TLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~L--a~~G~~V~-v~dr~~~-~~~~-l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+|+|||+|.+|..++..+ ...|+++. ++|.+++ +... ... + ..+...++++++++. ...|++++|+|
T Consensus 85 ~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~-G-----vpV~~~~dL~~~v~~-~~Id~vIIAvP 157 (212)
T 3keo_A 85 TNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTED-G-----IPVYGISTINDHLID-SDIETAILTVP 157 (212)
T ss_dssp EEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTT-C-----CBEEEGGGHHHHC-C-CSCCEEEECSC
T ss_pred CEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeEC-C-----eEEeCHHHHHHHHHH-cCCCEEEEecC
Confidence 4799999999999999873 45677755 6799987 6432 111 1 234445666676654 24899999999
Q ss_pred CCchHHHHHHHHHh
Q 010637 82 AGSPVDQTIAALSE 95 (505)
Q Consensus 82 ~~~~v~~vl~~l~~ 95 (505)
+. ...++.+.+.+
T Consensus 158 s~-~aq~v~d~lv~ 170 (212)
T 3keo_A 158 ST-EAQEVADILVK 170 (212)
T ss_dssp GG-GHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHH
Confidence 95 45667776664
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0095 Score=54.23 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=47.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~----~~s~~e~v~~l~~advIil~vp 81 (505)
|+|.|+|. |.+|..++..|++.|++|.+.+|++++...+... ++.. ..+.+++.+.++.+|+||.+..
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPR-------PAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCC-------CSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCC-------ceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 58999997 9999999999999999999999998764321110 1211 1244444444455788887765
Q ss_pred C
Q 010637 82 A 82 (505)
Q Consensus 82 ~ 82 (505)
.
T Consensus 77 ~ 77 (206)
T 1hdo_A 77 T 77 (206)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0077 Score=59.25 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=58.0
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~-MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||.|. +|.++|..|...|.+|++++++. .++++.+.. +|+||.+++....
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 221 (301)
T 1a4i_A 166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT---------------------AHLDEEVNK---GDILVVATGQPEM 221 (301)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SSHHHHHTT---CSEEEECCCCTTC
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc---------------------ccHHHHhcc---CCEEEECCCCccc
Confidence 5799999995 79999999999999999997442 355666665 9999999988642
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 222 I~------~~~vk~GavVIDVgi~~ 240 (301)
T 1a4i_A 222 VK------GEWIKPGAIVIDCGINY 240 (301)
T ss_dssp BC------GGGSCTTCEEEECCCBC
T ss_pred CC------HHHcCCCcEEEEccCCC
Confidence 21 12467999999998754
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.011 Score=57.73 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=31.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
+++|.|+|. |.+|..++..|++.|++|.+.+|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 38 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 38 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence 468999996 9999999999999999999999973
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0096 Score=59.91 Aligned_cols=99 Identities=18% Similarity=0.236 Sum_probs=58.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEEEE-eC--ChHHHHHHHHhhcccCCC------------------CeeeeC--
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPISVY-NR--TTSKVDETLDRAHREGQL------------------PLTGHY-- 61 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V~v~-dr--~~~~~~~l~~~~~~~g~~------------------~i~~~~-- 61 (505)
++||||+|+|.+|+.+++.|.++ +++|... |+ +++....+.+.....|.+ .+....
T Consensus 3 ~ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 82 (337)
T 3e5r_O 3 KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIR 82 (337)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCS
T ss_pred ceEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecC
Confidence 35999999999999999999987 5666544 53 455555554211110000 011222
Q ss_pred CHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCc--EEEecCC
Q 010637 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGD--CIIDGGN 108 (505)
Q Consensus 62 s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~--iIId~st 108 (505)
+++++.-.-..+|+||.|+|.....+ .... ++..|. +|||.+.
T Consensus 83 dp~~l~w~~~~vDvV~eaTg~~~~~e-~a~~---~l~aGak~VVIs~pa 127 (337)
T 3e5r_O 83 NPDEIPWAEAGAEYVVESTGVFTDKE-KAAA---HLKGGAKKVVISAPS 127 (337)
T ss_dssp CGGGCCHHHHTCSEEEECSSSCCSHH-HHTH---HHHTTCSEEEESSCC
T ss_pred ChHHccccccCCCEEEECCCchhhHH-HHHH---HHHcCCCEEEEecCC
Confidence 56654100013899999999875533 3333 334565 8998875
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.011 Score=59.32 Aligned_cols=100 Identities=11% Similarity=0.144 Sum_probs=61.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeC--ChHHHHHHHHhhcccCCC----------------Ceeee--CCH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNR--TTSKVDETLDRAHREGQL----------------PLTGH--YTP 63 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr--~~~~~~~l~~~~~~~g~~----------------~i~~~--~s~ 63 (505)
+.||||+|+|.+|+.+++.|.++ +.+|. +.|+ +++....+.+.....|.+ .+... .++
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~ 82 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP 82 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred ceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCH
Confidence 46999999999999999998875 46766 4564 677666665421111000 11112 255
Q ss_pred HHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 64 RDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+++.-.-..+|+||+|+|.....+ ....++..|..+|++|.-
T Consensus 83 ~~l~~~~~~vDvV~eatg~~~~~e----~a~~~l~aGak~V~iSap 124 (335)
T 1u8f_O 83 SKIKWGDAGAEYVVESTGVFTTME----KAGAHLQGGAKRVIISAP 124 (335)
T ss_dssp GGCCTTTTTCCEEEECSSSCCSHH----HHGGGGGGTCSEEEESSC
T ss_pred HHCccccCCCCEEEECCCchhhHH----HHHHHHhCCCeEEEeccC
Confidence 554200023899999999875433 234566778777777764
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.035 Score=57.45 Aligned_cols=106 Identities=17% Similarity=0.127 Sum_probs=65.0
Q ss_pred CCcEEEEcccHH-HHHHHHHHHh--C---CCcEEEEeCChHHHHHHHHhh---cccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010637 6 LSRIGLAGLAVM-GQNLALNVAE--K---GFPISVYNRTTSKVDETLDRA---HREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 6 ~~~IgIIGlG~M-G~~lA~~La~--~---G~~V~v~dr~~~~~~~l~~~~---~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
++||+|||+|.. +..+...|+. . +.+|.++|+++++++...... .... .+++.+.+..+.++. +|+|
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~-~~v~~t~d~~~al~~---AD~V 77 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDR-FKVLISDTFEGAVVD---AKYV 77 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTS-SEEEECSSHHHHHTT---CSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCC-eEEEEeCCHHHHhCC---CCEE
Confidence 369999999884 2222234454 3 568999999998865432211 1100 135666777666666 9999
Q ss_pred EEEcCCCc-----------------------------------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHH
Q 010637 77 IILVKAGS-----------------------------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR 117 (505)
Q Consensus 77 il~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~ 117 (505)
|++.-.+. .+.++++.+.++ . +.++|+.||-....|...
T Consensus 78 iitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~-~-~A~lin~TNPvdi~t~a~ 151 (417)
T 1up7_A 78 IFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKT-S-NATIVNFTNPSGHITEFV 151 (417)
T ss_dssp EECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHT-T-CCEEEECSSSHHHHHHHH
T ss_pred EEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHH-C-CEEEEEeCChHHHHHHHH
Confidence 99984431 133444555554 4 788888888654444333
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.008 Score=58.77 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=57.6
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~-MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||.|. +|.++|..|...|.+|+++++.. .++++.+.. +|+||.+++....
T Consensus 160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~L~~~~~~---ADIVI~Avg~p~l 215 (288)
T 1b0a_A 160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------------------KNLRHHVEN---ADLLIVAVGKPGF 215 (288)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------------------SCHHHHHHH---CSEEEECSCCTTC
T ss_pred CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHHhcc---CCEEEECCCCcCc
Confidence 5799999996 69999999999999999997443 356666666 9999999987642
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+. ...+++|.+|||.+..
T Consensus 216 I~------~~~vk~GavVIDVgi~ 233 (288)
T 1b0a_A 216 IP------GDWIKEGAIVIDVGIN 233 (288)
T ss_dssp BC------TTTSCTTCEEEECCCE
T ss_pred CC------HHHcCCCcEEEEccCC
Confidence 11 1246899999999865
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.014 Score=57.50 Aligned_cols=127 Identities=11% Similarity=0.153 Sum_probs=69.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|||+|-.|..++.+|+..|. ++.++|.+.=....+..........+-.-+....+.+..+ .+++-|...+..-.
T Consensus 37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~i-NP~v~v~~~~~~l~ 115 (292)
T 3h8v_A 37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNI-NPDVLFEVHNYNIT 115 (292)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHH-CTTSEEEEECCCTT
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhh-CCCcEEEEecccCC
Confidence 579999999999999999999996 7899998863222222110000000001111222222222 26777777664321
Q ss_pred HHHHHHHHHh-----cC---CCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 86 VDQTIAALSE-----HM---SPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 86 v~~vl~~l~~-----~l---~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-.+.++.+.. .+ ..-|+|||++-.. ..-..+.+.+...++-|+.++++|
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~-~~R~~in~~c~~~~~Pli~~gv~~ 172 (292)
T 3h8v_A 116 TVENFQHFMDRISNGGLEEGKPVDLVLSCVDNF-EARMTINTACNELGQTWMESGVSE 172 (292)
T ss_dssp SHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSH-HHHHHHHHHHHHHTCCEEEEEECT
T ss_pred cHHHHHHHhhhhcccccccCCCCCEEEECCcch-hhhhHHHHHHHHhCCCEEEeeeec
Confidence 1122233221 11 3568999987654 333345566677788898887775
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0078 Score=55.89 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=50.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee--eCC-HHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYT-PRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s-~~e~v~~l~~advIil~vp~ 82 (505)
|+|.|.| .|.+|..++..|++.|++|.+.+|++++.+.+ .+. .+.. ..+ .+++.+.++.+|+||.+...
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--~~~-----~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~ 73 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY--NNV-----KAVHFDVDWTPEEMAKQLHGMDAIINVSGS 73 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC--TTE-----EEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc--CCc-----eEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence 4799998 69999999999999999999999998764432 110 0111 124 55666666778999888754
Q ss_pred C
Q 010637 83 G 83 (505)
Q Consensus 83 ~ 83 (505)
.
T Consensus 74 ~ 74 (219)
T 3dqp_A 74 G 74 (219)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0089 Score=58.41 Aligned_cols=74 Identities=23% Similarity=0.284 Sum_probs=57.6
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~-MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++.|||.|. +|.++|..|...|.+|+++++.. .++++.+.. +|+||.+++....
T Consensus 162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T---------------------~~L~~~~~~---ADIVI~Avg~p~~ 217 (286)
T 4a5o_A 162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT---------------------RDLADHVSR---ADLVVVAAGKPGL 217 (286)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC---------------------SCHHHHHHT---CSEEEECCCCTTC
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC---------------------cCHHHHhcc---CCEEEECCCCCCC
Confidence 4799999875 89999999999999999997532 255566666 9999999987533
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+. ...+++|.+|||.+...
T Consensus 218 I~------~~~vk~GavVIDvgi~~ 236 (286)
T 4a5o_A 218 VK------GEWIKEGAIVIDVGINR 236 (286)
T ss_dssp BC------GGGSCTTCEEEECCSCS
T ss_pred CC------HHHcCCCeEEEEecccc
Confidence 22 13578999999998653
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0076 Score=58.71 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=56.8
Q ss_pred CcEEEEcccHH-HHHHHHHHHhC--CCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVM-GQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~M-G~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.++.|||.|.| |.++|..|... |.+|++++++. .++.+.+.. +|+||.+++..
T Consensus 159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t---------------------~~L~~~~~~---ADIVI~Avg~p 214 (281)
T 2c2x_A 159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT---------------------RDLPALTRQ---ADIVVAAVGVA 214 (281)
T ss_dssp CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC---------------------SCHHHHHTT---CSEEEECSCCT
T ss_pred CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch---------------------hHHHHHHhh---CCEEEECCCCC
Confidence 57999999975 99999999999 88999997553 245555555 99999999876
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..+. ...+++|.+|||.+..
T Consensus 215 ~~I~------~~~vk~GavVIDVgi~ 234 (281)
T 2c2x_A 215 HLLT------ADMVRPGAAVIDVGVS 234 (281)
T ss_dssp TCBC------GGGSCTTCEEEECCEE
T ss_pred cccC------HHHcCCCcEEEEccCC
Confidence 4221 1246789999999865
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0077 Score=61.18 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=56.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCC--CCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQ--LPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~--~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+||+|+| .|.+|+.+.+.|.++.. +|...+...+.-..+...... .+. ..+... + ++..+ .+|+||+|+|
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~-~-~~~~~---~vDvVf~atp 91 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSV-K-DADFS---TVDAVFCCLP 91 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCG-G-GCCGG---GCSEEEECCC
T ss_pred cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceec-c-hhHhc---CCCEEEEcCC
Confidence 5899999 89999999999998764 776665433221122211110 000 011111 1 22223 3899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.+...+ . ...+ ..|..|||.|+.+
T Consensus 92 ~~~s~~-~---a~~~-~aG~~VId~sa~~ 115 (359)
T 1xyg_A 92 HGTTQE-I---IKEL-PTALKIVDLSADF 115 (359)
T ss_dssp TTTHHH-H---HHTS-CTTCEEEECSSTT
T ss_pred chhHHH-H---HHHH-hCCCEEEECCccc
Confidence 975422 2 2234 6789999998865
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.006 Score=64.38 Aligned_cols=71 Identities=8% Similarity=0.111 Sum_probs=47.5
Q ss_pred CcEEEEcccHHHHH--HHHHHHh------CCCcEEEEeCChHHHHHHHH---hhc-ccC-CCCeeeeCCHHHHHhhcCCC
Q 010637 7 SRIGLAGLAVMGQN--LALNVAE------KGFPISVYNRTTSKVDETLD---RAH-REG-QLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 7 ~~IgIIGlG~MG~~--lA~~La~------~G~~V~v~dr~~~~~~~l~~---~~~-~~g-~~~i~~~~s~~e~v~~l~~a 73 (505)
|||+|||.|..|.. +...++. .+.+|.++|.++++++.... ... ..+ ..++..+++.+++++. +
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~g---A 77 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEG---A 77 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTT---C
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCC---C
Confidence 58999999998754 3333442 23479999999988654321 100 000 1257778899988877 9
Q ss_pred cEEEEEc
Q 010637 74 RSVIILV 80 (505)
Q Consensus 74 dvIil~v 80 (505)
|+||+++
T Consensus 78 D~Vi~~~ 84 (477)
T 3u95_A 78 DFIINTA 84 (477)
T ss_dssp SEEEECC
T ss_pred CEEEECc
Confidence 9999986
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.039 Score=54.75 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=45.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeC--ChHHHHH----HHHhhcccCCCCeeeeC---CHHHHHhhcCCCc
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNR--TTSKVDE----TLDRAHREGQLPLTGHY---TPRDFVLSIQRPR 74 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~--~V~v~dr--~~~~~~~----l~~~~~~~g~~~i~~~~---s~~e~v~~l~~ad 74 (505)
|||.|+|+ |.+|..++..|+..|+ ++.++|+ ++++++. +.......+ .++.... ++.+..+ .+|
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~-~~~~i~~~~d~l~~al~---gaD 76 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTR-SDANIYVESDENLRIID---ESD 76 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSC-CCCEEEEEETTCGGGGT---TCS
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcC-CCeEEEeCCcchHHHhC---CCC
Confidence 58999999 9999999999998885 6889999 7655432 222111000 0122222 2344444 499
Q ss_pred EEEEEc
Q 010637 75 SVIILV 80 (505)
Q Consensus 75 vIil~v 80 (505)
+||++.
T Consensus 77 ~Vi~~A 82 (313)
T 1hye_A 77 VVIITS 82 (313)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999986
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.01 Score=62.18 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=66.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-C---cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-F---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-~---~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+||.|||+|.||+.++..|+++. + +|++.|.+.... +..+... .+++...|.
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~-------------------~~~~~~g----~~~~~~~Vd 69 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV-------------------DVAQQYG----VSFKLQQIT 69 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC-------------------CHHHHHT----CEEEECCCC
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhh-------------------hHHhhcC----CceeEEecc
Confidence 468999999999999999999874 4 688887664321 1122111 344444444
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGV 133 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pv 133 (505)
+. .+++++. +.+.++++||+.+ .+.....+.+.+.+.|++|++...
T Consensus 70 ad-nv~~~l~---aLl~~~DvVIN~s--~~~~~l~Im~acleaGv~YlDTa~ 115 (480)
T 2ph5_A 70 PQ-NYLEVIG---STLEENDFLIDVS--IGISSLALIILCNQKGALYINAAT 115 (480)
T ss_dssp TT-THHHHTG---GGCCTTCEEEECC--SSSCHHHHHHHHHHHTCEEEESSC
T ss_pred ch-hHHHHHH---HHhcCCCEEEECC--ccccCHHHHHHHHHcCCCEEECCC
Confidence 43 3444443 3455569999855 455677888888889999999754
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0049 Score=57.12 Aligned_cols=33 Identities=15% Similarity=0.428 Sum_probs=31.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.+|.|||+|.-|...|..|+++|++|.++++.+
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~ 35 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 479999999999999999999999999999875
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.049 Score=54.87 Aligned_cols=99 Identities=12% Similarity=0.080 Sum_probs=62.9
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChHH--HHHHHH---hhcccCCCCeeeeCCHHHHHhhcCCCc
Q 010637 8 RIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VDETLD---RAHREGQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~G~-------~V~v~dr~~~~--~~~l~~---~~~~~g~~~i~~~~s~~e~v~~l~~ad 74 (505)
||+|+|+ |.+|.+++..|+.... ++.+||+++.. ++-... ........++...+++.+..++ +|
T Consensus 26 KVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~---ad 102 (345)
T 4h7p_A 26 KVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDG---VA 102 (345)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTT---CS
T ss_pred EEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCC---CC
Confidence 8999996 9999999999998653 79999998642 222111 1110000035566777766665 99
Q ss_pred EEEEEcC----CCch-----------HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 75 SVIILVK----AGSP-----------VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 75 vIil~vp----~~~~-----------v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+||++-- ++.. ++++.+.+..+..++.+|+-.||-
T Consensus 103 vVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNP 152 (345)
T 4h7p_A 103 IAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNP 152 (345)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred EEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCC
Confidence 9999752 2222 333345555656677777777773
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.018 Score=56.65 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=31.7
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
+||+|.|+|. |.+|..++..|++.|++|.+.+|++
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence 4678999995 9999999999999999999999986
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.043 Score=53.46 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=78.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
..++.+|.+.|.+.+..+..++|++.+.++. ++|.+++.++.+.|. ..|++++.....+.+.+... .
T Consensus 165 g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~------~ 231 (287)
T 3pdu_A 165 GQGARMKLVVNMIMGQMMTALGEGMALGRNC------GLDGGQLLEVLDAGA-MANPMFKGKGQMLLSGEFPT------S 231 (287)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHST-TCCHHHHHHHHHHHHTCCCC------S
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhcc-ccChHHHhhccccccCCCCC------C
Confidence 4678999999999999999999999998853 399999999999873 57887777655554432111 1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010637 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~ 443 (505)
|. +.....+++.++..|-+.|+|+|.+.++...|..
T Consensus 232 ~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 267 (287)
T 3pdu_A 232 FP--LKHMQKDLRLAVELGDRLGQPLHGAATANESFKR 267 (287)
T ss_dssp SB--HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred Cc--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 21 2233455799999999999999999998886654
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.017 Score=58.23 Aligned_cols=73 Identities=12% Similarity=0.046 Sum_probs=49.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHH--HHHHHhhcccCCCCeeeeC---CHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKV--DETLDRAHREGQLPLTGHY---TPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~--~~l~~~~~~~g~~~i~~~~---s~~e~v~~l~~advIil~ 79 (505)
.|+|.|.|. |.+|..++..|++.|++|.+.+|++++. +.+...... .+...+ +.+++.+.++.+|+||.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v----~~v~~D~l~d~~~l~~~~~~~d~Vi~~ 80 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNV----TLFQGPLLNNVPLMDTLFEGAHLAFIN 80 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTE----EEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCc----EEEECCccCCHHHHHHHHhcCCEEEEc
Confidence 468999985 9999999999999999999999988764 333321100 112222 455555555569999876
Q ss_pred cCC
Q 010637 80 VKA 82 (505)
Q Consensus 80 vp~ 82 (505)
...
T Consensus 81 a~~ 83 (352)
T 1xgk_A 81 TTS 83 (352)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.02 Score=56.35 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=48.0
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChH-HHHHH---HHhhcccCCCCeee--eCCHHHHHhhcCCCcEEE
Q 010637 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTS-KVDET---LDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 5 ~~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~-~~~~l---~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIi 77 (505)
|+++|.|+|. |.+|..++..|++.|++|.+.+|+++ +.+.+ ...+. .+.. ..+.+++.+.++.+|+||
T Consensus 10 m~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v-----~~v~~Dl~d~~~l~~a~~~~d~vi 84 (318)
T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGA-----IIVKGELDEHEKLVELMKKVDVVI 84 (318)
T ss_dssp CCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTC-----EEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CCCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCC-----EEEEecCCCHHHHHHHHcCCCEEE
Confidence 3458999995 99999999999999999999999874 33222 22111 1111 124444555555588887
Q ss_pred EEcC
Q 010637 78 ILVK 81 (505)
Q Consensus 78 l~vp 81 (505)
.+..
T Consensus 85 ~~a~ 88 (318)
T 2r6j_A 85 SALA 88 (318)
T ss_dssp ECCC
T ss_pred ECCc
Confidence 7764
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0045 Score=62.68 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=57.4
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCC-----C-cEEEEe-C-ChHH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKG-----F-PISVYN-R-TTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G-----~-~V~v~d-r-~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~adv 75 (505)
|+||+|+| .|.+|+.+.+.|.+++ + +|..+. + +..+ ...............+.. .+.+++ .. +|+
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~-~~~~~~-~~---~Dv 83 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEP-TEAAVL-GG---HDA 83 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEE-CCHHHH-TT---CSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeecc-CCHHHh-cC---CCE
Confidence 36899999 8999999999999987 3 666554 2 2222 211100000000001211 234443 23 999
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
||+|+|.+. ..+++..+ ..|..+||.|+..-
T Consensus 84 Vf~alg~~~-s~~~~~~~----~~G~~vIDlSa~~R 114 (352)
T 2nqt_A 84 VFLALPHGH-SAVLAQQL----SPETLIIDCGADFR 114 (352)
T ss_dssp EEECCTTSC-CHHHHHHS----CTTSEEEECSSTTT
T ss_pred EEECCCCcc-hHHHHHHH----hCCCEEEEECCCcc
Confidence 999999874 34443333 56899999998764
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.029 Score=54.24 Aligned_cols=86 Identities=13% Similarity=0.217 Sum_probs=56.7
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.|+.+| |.|-+|..+|+.|++.|++|.+.+|++++.+++.+..... -.. ...+..=+.+..
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dv~d~~ 90 (270)
T 3ftp_A 28 KQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA--------------GLE---GRGAVLNVNDAT 90 (270)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH--------------TCC---CEEEECCTTCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEEeCCCHH
Confidence 356666 4689999999999999999999999998877665432110 000 223333344445
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++++...+.+=+++|++...
T Consensus 91 ~v~~~~~~~~~~~g~iD~lvnnAg~ 115 (270)
T 3ftp_A 91 AVDALVESTLKEFGALNVLVNNAGI 115 (270)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 6677777666655555788877653
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.019 Score=55.96 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=47.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh-------HHHHHHHHhhcccCCCCeee----eCCHHHHHhhcCCC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTT-------SKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRP 73 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~-------~~~~~l~~~~~~~g~~~i~~----~~s~~e~v~~l~~a 73 (505)
|++|.|+|. |.+|..++..|++.|++|.+.+|++ ++.+.+.... .. ++.. ..+.+++.+.++.+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~-~~---~v~~v~~D~~d~~~l~~~~~~~ 77 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQ-SL---GVILLEGDINDHETLVKAIKQV 77 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHH-HT---TCEEEECCTTCHHHHHHHHTTC
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHH-hC---CCEEEEeCCCCHHHHHHHHhCC
Confidence 468999996 9999999999999999999999987 5544332110 00 1111 12344444444557
Q ss_pred cEEEEEcCC
Q 010637 74 RSVIILVKA 82 (505)
Q Consensus 74 dvIil~vp~ 82 (505)
|+||.+...
T Consensus 78 d~vi~~a~~ 86 (307)
T 2gas_A 78 DIVICAAGR 86 (307)
T ss_dssp SEEEECSSS
T ss_pred CEEEECCcc
Confidence 777776653
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.021 Score=54.50 Aligned_cols=95 Identities=15% Similarity=0.277 Sum_probs=55.7
Q ss_pred CCcCCCCcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 1 MEASALSRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 m~~~~~~~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|++....|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.+++.++... .........++-.
T Consensus 1 M~~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 66 (250)
T 3nyw_A 1 MSLEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMR--------------SNKHVQEPIVLPL 66 (250)
T ss_dssp ----CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHH--------------HCTTSCCCEEEEC
T ss_pred CcccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH--------------hccccCcceEEec
Confidence 554444455554 5 59999999999999999999999999887776553211 0000000122222
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
=+.+...++.+++++.....+=+++|++...
T Consensus 67 Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAg~ 97 (250)
T 3nyw_A 67 DITDCTKADTEIKDIHQKYGAVDILVNAAAM 97 (250)
T ss_dssp CTTCHHHHHHHHHHHHHHHCCEEEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 2334445666666666555455777776543
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.028 Score=54.80 Aligned_cols=82 Identities=10% Similarity=0.115 Sum_probs=55.9
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
-|++|| |.+-+|..+|+.|++.|.+|.+.+|+.+++++..++.... +-.+..=+.+..
T Consensus 29 gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~--------------------~~~~~~Dv~~~~ 88 (273)
T 4fgs_A 29 AKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGG--------------------AVGIQADSANLA 88 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTT--------------------CEEEECCTTCHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCC--------------------eEEEEecCCCHH
Confidence 368888 4578999999999999999999999999887766542110 111222234445
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st 108 (505)
.++++++++...+.+=|++|+...
T Consensus 89 ~v~~~~~~~~~~~G~iDiLVNNAG 112 (273)
T 4fgs_A 89 ELDRLYEKVKAEAGRIDVLFVNAG 112 (273)
T ss_dssp HHHHHHHHHHHHHSCEEEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 677777777665555567776554
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.018 Score=56.00 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=49.5
Q ss_pred CCCCcEEEEcc-cHHHHHHHHHHHhCC-CcEEEEeCChHHH--HHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEE
Q 010637 4 SALSRIGLAGL-AVMGQNLALNVAEKG-FPISVYNRTTSKV--DETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 4 ~~~~~IgIIGl-G~MG~~lA~~La~~G-~~V~v~dr~~~~~--~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIi 77 (505)
+++++|-|.|. |.+|..++..|++.| ++|.+.+|++++. +.+...+.. +.. ..+++++.+.++.+|+||
T Consensus 3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~-----~~~~D~~d~~~l~~~~~~~d~vi 77 (299)
T 2wm3_A 3 VDKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAE-----VVQGDQDDQVIMELALNGAYATF 77 (299)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCE-----EEECCTTCHHHHHHHHTTCSEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCE-----EEEecCCCHHHHHHHHhcCCEEE
Confidence 33468999997 999999999999998 9999999998754 223222211 111 134455555555689888
Q ss_pred EEcC
Q 010637 78 ILVK 81 (505)
Q Consensus 78 l~vp 81 (505)
.+..
T Consensus 78 ~~a~ 81 (299)
T 2wm3_A 78 IVTN 81 (299)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 8764
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.041 Score=52.82 Aligned_cols=122 Identities=9% Similarity=0.133 Sum_probs=63.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|.|||+|.+|..++.+|+..|. +++++|.+.-....+..+.. .....+-.-+....+.+..+ .+++-+..++..-
T Consensus 29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~v~~~~~~~ 107 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQL-NPDIQLTALQQRL 107 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEECSCC
T ss_pred CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHH-CCCCEEEEEeccC
Confidence 589999999999999999999997 78899887522111111100 00000000011111112211 1455555554321
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (505)
. .+-+.++.. .-++|||++.. +..-..+.+.+.+.++.++.+.+.
T Consensus 108 ~-~~~~~~~~~---~~DvVi~~~d~-~~~r~~l~~~~~~~~~p~i~~~~~ 152 (251)
T 1zud_1 108 T-GEALKDAVA---RADVVLDCTDN-MATRQEINAACVALNTPLITASAV 152 (251)
T ss_dssp C-HHHHHHHHH---HCSEEEECCSS-HHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred C-HHHHHHHHh---cCCEEEECCCC-HHHHHHHHHHHHHhCCCEEEEecc
Confidence 1 112233322 34888888653 333334555666677777775543
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.038 Score=52.84 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=55.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++-|.| .|-+|..+|+.|++.|++|.+.+|+.++.+++.+.... . ...+..=+.+...+
T Consensus 10 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~D~~~~~~v 69 (259)
T 4e6p_A 10 SALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGP-----------------A---AYAVQMDVTRQDSI 69 (259)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT-----------------T---EEEEECCTTCHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCC-----------------C---ceEEEeeCCCHHHH
Confidence 355666 59999999999999999999999999887766543210 0 11122223333456
Q ss_pred HHHHHHHHhcCCCCcEEEecCCC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+.+++++.....+=+++|++...
T Consensus 70 ~~~~~~~~~~~g~id~lv~~Ag~ 92 (259)
T 4e6p_A 70 DAAIAATVEHAGGLDILVNNAAL 92 (259)
T ss_dssp HHHHHHHHHHSSSCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 66777776666566788887654
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.065 Score=50.54 Aligned_cols=78 Identities=12% Similarity=0.110 Sum_probs=52.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH-HHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIil~vp~~~ 84 (505)
++|-|||.|.+|..-+..|.+.|.+|++++.+.. .++.+.+.+ ++.... ... .+.|..+|+||.++.+.
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~------~i~~i~~~~~--~~dL~~adLVIaAT~d~- 102 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKG------QLRVKRKKVG--EEDLLNVFFIVVATNDQ- 102 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTT------SCEEECSCCC--GGGSSSCSEEEECCCCT-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcC------CcEEEECCCC--HhHhCCCCEEEECCCCH-
Confidence 5799999999999999999999999999987653 345555443 132221 111 12344599998876554
Q ss_pred hHHHHHHHH
Q 010637 85 PVDQTIAAL 93 (505)
Q Consensus 85 ~v~~vl~~l 93 (505)
.+...+...
T Consensus 103 ~~N~~I~~~ 111 (223)
T 3dfz_A 103 AVNKFVKQH 111 (223)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566555544
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.053 Score=54.02 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=46.5
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--HHHHH----HHHhhcc-cCCCCeeeeCCHHHHHhhc
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTT--SKVDE----TLDRAHR-EGQLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~-------~V~v~dr~~--~~~~~----l~~~~~~-~g~~~i~~~~s~~e~v~~l 70 (505)
.|||.|+|. |.+|+.++..|+..|+ +|.++|+++ ++.+. +...... .+ .+....+..+.++.
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~--di~~~~~~~~a~~~- 80 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLA--GLEATDDPKVAFKD- 80 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEE--EEEEESCHHHHTTT-
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccC--CeEeccChHHHhCC-
Confidence 458999996 9999999999999996 899999975 22221 2111000 00 23334555555554
Q ss_pred CCCcEEEEEc
Q 010637 71 QRPRSVIILV 80 (505)
Q Consensus 71 ~~advIil~v 80 (505)
+|+||.+.
T Consensus 81 --~D~Vih~A 88 (327)
T 1y7t_A 81 --ADYALLVG 88 (327)
T ss_dssp --CSEEEECC
T ss_pred --CCEEEECC
Confidence 99999875
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.012 Score=59.51 Aligned_cols=97 Identities=11% Similarity=0.116 Sum_probs=55.9
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCC-CcEEEEe-CChHHHHHHHHhhccc-------CCCCeeeeC-CHHHHHhhcCCCc
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKG-FPISVYN-RTTSKVDETLDRAHRE-------GQLPLTGHY-TPRDFVLSIQRPR 74 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G-~~V~v~d-r~~~~~~~l~~~~~~~-------g~~~i~~~~-s~~e~v~~l~~ad 74 (505)
++||||+| .|.+|..+.+.|.++. ++|.... .+...-+.+.+..... +...+...+ +++++ + .+|
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~---~vD 79 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYEDH-K---DVD 79 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGGG-T---TCS
T ss_pred CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHHh-c---CCC
Confidence 46899999 7999999999998764 4666554 2222111121110000 000122222 34443 3 499
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+||+|+|.+. ..+....+ +..|..|||.|+.+
T Consensus 80 vVf~atp~~~-s~~~a~~~---~~aG~~VId~s~~~ 111 (350)
T 2ep5_A 80 VVLSALPNEL-AESIELEL---VKNGKIVVSNASPF 111 (350)
T ss_dssp EEEECCCHHH-HHHHHHHH---HHTTCEEEECSSTT
T ss_pred EEEECCChHH-HHHHHHHH---HHCCCEEEECCccc
Confidence 9999998853 34444443 34678899998753
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.039 Score=52.88 Aligned_cols=89 Identities=9% Similarity=0.040 Sum_probs=54.8
Q ss_pred CCcCCCC-cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 1 MEASALS-RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 m~~~~~~-~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|.+.+.. +|-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+..
T Consensus 1 M~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~ 60 (260)
T 1nff_A 1 MSGRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----------------DA---ARYVHL 60 (260)
T ss_dssp -CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----------------GG---EEEEEC
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----------------cC---ceEEEe
Confidence 5444433 455666 5999999999999999999999999887766544211 00 111222
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
=+.+...++.+++.+...+.+=+++|++...
T Consensus 61 D~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~ 91 (260)
T 1nff_A 61 DVTQPAQWKAAVDTAVTAFGGLHVLVNNAGI 91 (260)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2233345566666665544445777776553
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.028 Score=59.51 Aligned_cols=112 Identities=19% Similarity=0.235 Sum_probs=70.2
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChH-HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cC
Q 010637 6 LSRIGLAGLAVMGQN-LALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VK 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~-lA~~La~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp 81 (505)
.++|-|||+|..|.+ +|+.|.+.|++|+++|.... ..+.+.+.+.. +..-.+++. +. .+|+||.+ +|
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~-----~~~g~~~~~-~~---~~d~vV~Spgi~ 92 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQ-----IYFHHRPEN-VL---DASVVVVSTAIS 92 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCE-----EESSCCGGG-GT---TCSEEEECTTSC
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCE-----EECCCCHHH-cC---CCCEEEECCCCC
Confidence 357999999999985 99999999999999997654 34555554321 222233333 23 38999886 45
Q ss_pred CCch-HHHHHH---------HHH-hcCCCC-cEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 82 AGSP-VDQTIA---------ALS-EHMSPG-DCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 82 ~~~~-v~~vl~---------~l~-~~l~~g-~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
.+.+ +....+ +++ ..++.. -|-|.+|++...++.-+...++..|.
T Consensus 93 ~~~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~ 149 (494)
T 4hv4_A 93 ADNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGL 149 (494)
T ss_dssp TTCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCC
Confidence 4432 222111 222 222222 46677777777667667778887774
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.017 Score=55.19 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=55.0
Q ss_pred CCcCCCCc-EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 1 MEASALSR-IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 m~~~~~~~-IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|++++..| +-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++.... . .++.++
T Consensus 1 M~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~ 61 (252)
T 3h7a_A 1 MSLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA----------------G---GRIVAR 61 (252)
T ss_dssp ----CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT----------------T---CEEEEE
T ss_pred CCcCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CeEEEE
Confidence 55544445 44555 589999999999999999999999998877765532110 0 233333
Q ss_pred E--cCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 79 L--VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~--vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
. +.+...++.+++.+... .+=+++|++...
T Consensus 62 ~~Dv~~~~~v~~~~~~~~~~-g~id~lv~nAg~ 93 (252)
T 3h7a_A 62 SLDARNEDEVTAFLNAADAH-APLEVTIFNVGA 93 (252)
T ss_dssp ECCTTCHHHHHHHHHHHHHH-SCEEEEEECCCC
T ss_pred ECcCCCHHHHHHHHHHHHhh-CCceEEEECCCc
Confidence 2 33334566666666655 444677776553
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.021 Score=54.50 Aligned_cols=90 Identities=12% Similarity=0.074 Sum_probs=52.2
Q ss_pred CCcCCCCcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 1 MEASALSRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 m~~~~~~~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|.+....|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.++..++. -.. ...+..
T Consensus 1 M~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------------~~~---~~~~~~ 60 (257)
T 3tpc_A 1 MVMQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----------------GAA---VRFRNA 60 (257)
T ss_dssp ---CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC--------------------------------CEEEEC
T ss_pred CccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----------------CCc---eEEEEc
Confidence 444444455554 5 589999999999999999999999987765543211 011 222322
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
=+.+...++.+++.+.....+=+++|++....
T Consensus 61 Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 92 (257)
T 3tpc_A 61 DVTNEADATAALAFAKQEFGHVHGLVNCAGTA 92 (257)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 33444566777777666555557888876543
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.032 Score=53.41 Aligned_cols=91 Identities=15% Similarity=0.269 Sum_probs=56.5
Q ss_pred CCcCCCCc-EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 1 MEASALSR-IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 m~~~~~~~-IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|.+.+..| |-|.| .|-+|..+|+.|+++|++|.+.+|++++.+++.+... +.. . .++.++
T Consensus 1 m~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~--------------~~~-~---~~~~~~ 62 (263)
T 3ai3_A 1 MDMGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLK--------------EKF-G---VRVLEV 62 (263)
T ss_dssp CCCCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------HHH-C---CCEEEE
T ss_pred CCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH--------------Hhc-C---CceEEE
Confidence 55544334 55555 5999999999999999999999999887665543211 000 1 233332
Q ss_pred E--cCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 79 L--VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~--vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
. +.+...++.+++.+...+.+=+++|++...
T Consensus 63 ~~D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~ 95 (263)
T 3ai3_A 63 AVDVATPEGVDAVVESVRSSFGGADILVNNAGT 95 (263)
T ss_dssp ECCTTSHHHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred EcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2 233345666666665554445778876653
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0075 Score=59.21 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=44.3
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 5 ALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 5 ~~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|+|+|.|.| .|.+|..++..|+++|++|.+.+|++...+ +. +.. -+...-+.+++.+.++++|+||-+..
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~--~~~----~~~~Dl~~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-IN--DYE----YRVSDYTLEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC--------CCE----EEECCCCHHHHHHHTTTCSEEEECCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CC--ceE----EEEccccHHHHHHhhcCCCEEEEccc
Confidence 356899998 599999999999999999999999955433 22 110 01111123334344455888887654
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.033 Score=56.26 Aligned_cols=93 Identities=20% Similarity=0.289 Sum_probs=58.8
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChH---HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTTS---KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G~-~V~v~dr~~~---~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|.|||||| .|..|.-|.+.|.++.. ++........ ++.+........ +.+.. .+.+++.+. +|++|+|+
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~--l~~~~-~~~~~~~~~---~Dvvf~al 86 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLEN--SILSE-FDPEKVSKN---CDVLFTAL 86 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCC--CBCBC-CCHHHHHHH---CSEEEECC
T ss_pred eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccC--ceEEe-CCHHHhhcC---CCEEEECC
Confidence 45899998 59999999999998853 5555542221 122211100010 11222 256666555 99999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
|.+. . .++.+.+ .|..|||.|+.+
T Consensus 87 p~~~-s----~~~~~~~-~g~~VIDlSsdf 110 (351)
T 1vkn_A 87 PAGA-S----YDLVREL-KGVKIIDLGADF 110 (351)
T ss_dssp STTH-H----HHHHTTC-CSCEEEESSSTT
T ss_pred CcHH-H----HHHHHHh-CCCEEEECChhh
Confidence 9973 2 3445556 899999999875
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.033 Score=53.42 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=53.7
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|..|| | .+-+|..+|+.|++.|++|.+.||++++.+++.+++.. +. .+..=+.+...
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~-----~~----------------~~~~Dv~~~~~ 61 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPN-----LF----------------YFHGDVADPLT 61 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTT-----EE----------------EEECCTTSHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC-----EE----------------EEEecCCCHHH
Confidence 44455 4 68899999999999999999999999887776654311 11 11112334455
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (505)
++.+++.+...+.+=|++|+...
T Consensus 62 v~~~v~~~~~~~g~iDiLVNNAG 84 (247)
T 3ged_A 62 LKKFVEYAMEKLQRIDVLVNNAC 84 (247)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66777666666555577777653
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.03 Score=53.74 Aligned_cols=82 Identities=16% Similarity=0.286 Sum_probs=56.3
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCCch
Q 010637 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGSP 85 (505)
Q Consensus 9 IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~~ 85 (505)
+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++.... . .++.++. +.+...
T Consensus 14 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~~~~~ 74 (264)
T 3ucx_A 14 VVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT----------------G---RRALSVGTDITDDAQ 74 (264)
T ss_dssp EEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCHHH
T ss_pred EEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEEcCCCCHHH
Confidence 44555 588999999999999999999999998877765532110 1 2333332 344456
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++++.....+=+++|++...
T Consensus 75 v~~~~~~~~~~~g~id~lv~nAg~ 98 (264)
T 3ucx_A 75 VAHLVDETMKAYGRVDVVINNAFR 98 (264)
T ss_dssp HHHHHHHHHHHTSCCSEEEECCCS
T ss_pred HHHHHHHHHHHcCCCcEEEECCCC
Confidence 777777777766666888887643
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.05 Score=58.03 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=71.5
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhCCCcEEEEeCCh--HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--c
Q 010637 6 LSRIGLAGLAVMGQN-LALNVAEKGFPISVYNRTT--SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--V 80 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~-lA~~La~~G~~V~v~dr~~--~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--v 80 (505)
.++|-|||.|-.|.+ +|+.|.+.|++|+++|... ...+.+.+.+.. +..-.+++.+... +|+||.. +
T Consensus 19 ~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~-----~~~G~~~~~~~~~---~d~vV~Spgi 90 (524)
T 3hn7_A 19 GMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVT-----IEEGYLIAHLQPA---PDLVVVGNAM 90 (524)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCE-----EEESCCGGGGCSC---CSEEEECTTC
T ss_pred CCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCE-----EECCCCHHHcCCC---CCEEEECCCc
Confidence 368999999999985 7999999999999999863 345566655421 3322444444333 8999885 4
Q ss_pred CCCch-HHHHHH---------HHH-hcCCC--CcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 81 KAGSP-VDQTIA---------ALS-EHMSP--GDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 81 p~~~~-v~~vl~---------~l~-~~l~~--g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
|.+.+ +....+ +++ ..+.+ .-|-|.+||+...+|.-+...++..|.
T Consensus 91 ~~~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~ 149 (524)
T 3hn7_A 91 KRGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGI 149 (524)
T ss_dssp CTTSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 54433 222221 222 22322 246677777776666667777887764
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.021 Score=57.89 Aligned_cols=34 Identities=9% Similarity=0.229 Sum_probs=26.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcE-EEEeCCh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG----FPI-SVYNRTT 39 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G----~~V-~v~dr~~ 39 (505)
+++|||||+|.||+.++..|.++. .+| .++|++.
T Consensus 4 ~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~ 42 (358)
T 1ebf_A 4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAER 42 (358)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSB
T ss_pred eEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECCh
Confidence 468999999999999999999863 454 3567543
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.037 Score=53.42 Aligned_cols=84 Identities=10% Similarity=0.128 Sum_probs=54.3
Q ss_pred CcEE-EEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIG-LAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~Ig-IIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.|+. |.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... . ...+..=+.+..
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~~~~ 70 (271)
T 3tzq_B 11 NKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGR-----------------G---AVHHVVDLTNEV 70 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCT-----------------T---CEEEECCTTCHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC-----------------C---eEEEECCCCCHH
Confidence 3444 445 58999999999999999999999998877665543210 0 122222233444
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.++++++.+...+.+=+++|++....
T Consensus 71 ~v~~~~~~~~~~~g~id~lv~nAg~~ 96 (271)
T 3tzq_B 71 SVRALIDFTIDTFGRLDIVDNNAAHS 96 (271)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 56666666665555557787765543
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.024 Score=54.79 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=50.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhC-CCcEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|.|.| .|.+|+.++..|++. |++|.+.+|++++...+...+.. +.. ..+++++.+.++.+|+||.+...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~-----~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVS-----VRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBE-----EEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCE-----EEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 5799999 599999999999998 99999999999875544322111 111 13455555556668888887654
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.07 Score=51.22 Aligned_cols=41 Identities=24% Similarity=0.461 Sum_probs=33.9
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
.|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.++..+
T Consensus 10 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 52 (267)
T 3t4x_A 10 GKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIK 52 (267)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 355555 5 5899999999999999999999999988766554
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.059 Score=55.54 Aligned_cols=114 Identities=14% Similarity=0.147 Sum_probs=76.3
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEE-EEeC----------ChHHHHHHHHhhcccCCC-CeeeeCCHHHHHhhcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAE-KGFPIS-VYNR----------TTSKVDETLDRAHREGQL-PLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~-~G~~V~-v~dr----------~~~~~~~l~~~~~~~g~~-~i~~~~s~~e~v~~l~~a 73 (505)
++|+|.|.|+||...++.|.+ .|.+|. +.|+ +.+.+.++.+....-.+. +.... +.+++... .+
T Consensus 210 ~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~-~~~eil~~--~~ 286 (415)
T 2tmg_A 210 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLEL--DV 286 (415)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEE-CHHHHTTC--SC
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEc-CchhhhcC--CC
Confidence 579999999999999999999 999887 6676 677777766542110000 11222 45665432 48
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
|+++-|...+.... +-.+.+ +-++|+...|... |.+..+.+.++|+.++.
T Consensus 287 DIliP~A~~n~i~~----~~a~~l-~ak~V~EgAN~p~--t~~a~~~l~~~Gi~~~P 336 (415)
T 2tmg_A 287 DILVPAALEGAIHA----GNAERI-KAKAVVEGANGPT--TPEADEILSRRGILVVP 336 (415)
T ss_dssp SEEEECSSTTSBCH----HHHTTC-CCSEEECCSSSCB--CHHHHHHHHHTTCEEEC
T ss_pred cEEEecCCcCccCc----ccHHHc-CCeEEEeCCCccc--CHHHHHHHHHCCCEEEC
Confidence 99998876653222 222334 5689999888764 45666778899998763
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.071 Score=51.32 Aligned_cols=84 Identities=11% Similarity=0.129 Sum_probs=59.2
Q ss_pred CCcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cC
Q 010637 6 LSRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VK 81 (505)
Q Consensus 6 ~~~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp 81 (505)
.-|+.+| |.+-+|..+|+.|++.|.+|.+++|++++++++.++....| .+++.+. |.
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g-------------------~~~~~~~~Dvt 66 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG-------------------KEVLGVKADVS 66 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------------CCEEEEECCTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------------CcEEEEEccCC
Confidence 3467777 56889999999999999999999999998877765432110 2333322 34
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+.+.++.+++++...+.+=|++|+...
T Consensus 67 ~~~~v~~~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 67 KKKDVEEFVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 445677777777766666678887654
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.018 Score=56.93 Aligned_cols=71 Identities=11% Similarity=0.160 Sum_probs=47.5
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIil~vp 81 (505)
+|+|-|.|. |.+|..++..|++.|++|.+.+|++++.+.+...+. .+... .+.+++.+.++.+|+||-+..
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~-----~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEP-----ECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCC-----EEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCe-----EEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 468999985 999999999999999999999999876543322111 01111 244444444555888887754
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.067 Score=53.61 Aligned_cols=99 Identities=15% Similarity=0.078 Sum_probs=61.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCC--c-----EEEEeCCh--HHHHH----HHHhhcccCCCCeeeeCCHHHHHhhcCC
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGF--P-----ISVYNRTT--SKVDE----TLDRAHREGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~--~-----V~v~dr~~--~~~~~----l~~~~~~~g~~~i~~~~s~~e~v~~l~~ 72 (505)
+||.|+| +|.+|.+++..|+..|. + +.++|+++ ++++- +....... ..++....+..+..+.
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~-~~~~~~~~~~~~~~~d--- 79 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATDKEEIAFKD--- 79 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEESCHHHHTTT---
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcc-cCCEEEcCCcHHHhCC---
Confidence 5899999 79999999999998886 5 99999975 23322 22211000 0024455565555554
Q ss_pred CcEEEEEcCC----C-----------chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 73 PRSVIILVKA----G-----------SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 73 advIil~vp~----~-----------~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+|+||++.-. + ..++++++.+..+-.++-.|+..||-
T Consensus 80 aDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNP 131 (333)
T 5mdh_A 80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNP 131 (333)
T ss_dssp CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 9999987521 1 12344445666655444457777764
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.045 Score=51.61 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=52.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... . ...+..=+.+...+
T Consensus 5 ~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~D~~~~~~v 64 (235)
T 3l6e_A 5 HIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGN-----------------A---VIGIVADLAHHEDV 64 (235)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----------------G---EEEEECCTTSHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC-----------------C---ceEEECCCCCHHHH
Confidence 466666 48999999999999999999999999887766543110 0 11222222333455
Q ss_pred HHHHHHHHhcCCCCcEEEecCCC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+.+++.+.....+=+++|++...
T Consensus 65 ~~~~~~~~~~~g~id~lvnnAg~ 87 (235)
T 3l6e_A 65 DVAFAAAVEWGGLPELVLHCAGT 87 (235)
T ss_dssp HHHHHHHHHHHCSCSEEEEECCC
T ss_pred HHHHHHHHHhcCCCcEEEECCCC
Confidence 66666655544445677766543
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.036 Score=57.46 Aligned_cols=114 Identities=13% Similarity=0.108 Sum_probs=75.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChHHHHHHHHhhcccCCC-CeeeeCCHHHHHhhcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNR----------TTSKVDETLDRAHREGQL-PLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~-v~dr----------~~~~~~~l~~~~~~~g~~-~i~~~~s~~e~v~~l~~ad 74 (505)
++|+|.|.|++|...|+.|.+.|..|. +.|+ +.+.+.++.+....-.++ ..+. .+.+++.. ..||
T Consensus 236 ~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~-i~~~ei~~--~~~D 312 (440)
T 3aog_A 236 ARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEP-LPAADFWG--LPVE 312 (440)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEE-CCHHHHTT--CCCS
T ss_pred CEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceE-cCchhhhc--CCCc
Confidence 579999999999999999999999987 6677 667776666542110000 1122 24556543 2489
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+++-|...+....+ -.+.+ +-++|+...|... |.+..+.+.++|+.|+.
T Consensus 313 IlvPcA~~n~i~~~----na~~l-~ak~VvEgAN~p~--t~eA~~iL~~~GI~~~P 361 (440)
T 3aog_A 313 FLVPAALEKQITEQ----NAWRI-RARIVAEGANGPT--TPAADDILLEKGVLVVP 361 (440)
T ss_dssp EEEECSSSSCBCTT----TGGGC-CCSEEECCSSSCB--CHHHHHHHHHHTCEEEC
T ss_pred EEEecCCcCccchh----hHHHc-CCcEEEecCcccc--CHHHHHHHHHCCCEEEC
Confidence 99988765432121 22234 5689999888764 45666788889998763
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.056 Score=50.83 Aligned_cols=91 Identities=9% Similarity=0.162 Sum_probs=57.0
Q ss_pred CCcCCCCc-EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 1 MEASALSR-IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 m~~~~~~~-IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|++.+..+ |-|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.+... +. .. .++.++
T Consensus 1 m~~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------~~-~~---~~~~~~ 62 (248)
T 2pnf_A 1 MEIKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIA--------------NK-YG---VKAHGV 62 (248)
T ss_dssp CCCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH--------------HH-HC---CCEEEE
T ss_pred CccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHH--------------hh-cC---CceEEE
Confidence 55544334 55555 5999999999999999999999999887665543210 00 01 223222
Q ss_pred E--cCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 79 L--VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~--vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
. +.+...++..++++...+.+=++||++...
T Consensus 63 ~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag~ 95 (248)
T 2pnf_A 63 EMNLLSEESINKAFEEIYNLVDGIDILVNNAGI 95 (248)
T ss_dssp ECCTTCHHHHHHHHHHHHHHSSCCSEEEECCCC
T ss_pred EccCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 2 233345666666666655555788887654
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.059 Score=54.42 Aligned_cols=97 Identities=14% Similarity=0.179 Sum_probs=58.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC-CCcEEEEeC---ChHHHHHHHHhhcccCCC----------------Ceeee--CC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEK-GFPISVYNR---TTSKVDETLDRAHREGQL----------------PLTGH--YT 62 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~-G~~V~v~dr---~~~~~~~l~~~~~~~g~~----------------~i~~~--~s 62 (505)
+|+||||+|.|.+|+.+.+.|.++ .++|...+- +.+....+.+.....|.+ .+... .+
T Consensus 16 ~~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~d 95 (354)
T 3cps_A 16 FQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKD 95 (354)
T ss_dssp --CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSC
T ss_pred cceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCC
Confidence 356999999999999999999987 577765542 333233332211100000 12222 25
Q ss_pred HHHHH---hhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCc--EEEecCC
Q 010637 63 PRDFV---LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGD--CIIDGGN 108 (505)
Q Consensus 63 ~~e~v---~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~--iIId~st 108 (505)
++++. .. +|+||.|+|.....+ ....++..|. +|||.+.
T Consensus 96 p~~i~w~~~~---vDvV~eatg~~~s~e----~a~~~l~~GakkvVId~pa 139 (354)
T 3cps_A 96 PAEIPWGASG---AQIVCESTGVFTTEE----KASLHLKGGAKKVIISAPP 139 (354)
T ss_dssp GGGCCHHHHT---CCEEEECSSSCCSHH----HHGGGGTTTCSEEEESSCC
T ss_pred hHHCCcccCC---CCEEEECCCchhhHH----HHHHHHHcCCcEEEEeCCC
Confidence 55431 23 899999999875432 2334566777 9999876
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.037 Score=55.18 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=47.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh----HHHHHHHHhhcccCCCCeee----eCCHHHHHhhcC--CCcE
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTT----SKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQ--RPRS 75 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~----~~~~~l~~~~~~~g~~~i~~----~~s~~e~v~~l~--~adv 75 (505)
++|.|.|. |.+|..++..|++.|++|.+.+|++ ++.+.+..... . ++.. ..+.+++.+.++ ++|+
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~-~---~v~~~~~Dl~d~~~l~~~~~~~~~d~ 86 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALED-K---GAIIVYGLINEQEAMEKILKEHEIDI 86 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHH-T---TCEEEECCTTCHHHHHHHHHHTTCCE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHh-C---CcEEEEeecCCHHHHHHHHhhCCCCE
Confidence 58999997 9999999999999999999999987 44443222110 0 1211 123444444444 5788
Q ss_pred EEEEcCC
Q 010637 76 VIILVKA 82 (505)
Q Consensus 76 Iil~vp~ 82 (505)
||.+...
T Consensus 87 Vi~~a~~ 93 (346)
T 3i6i_A 87 VVSTVGG 93 (346)
T ss_dssp EEECCCG
T ss_pred EEECCch
Confidence 8777643
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.06 Score=57.75 Aligned_cols=96 Identities=11% Similarity=0.127 Sum_probs=62.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh-hcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~ 82 (505)
.+.|-|+|.|.+|..++..|.+.|++|.+.|.++++++.+.+. +.. -+.+..+-++..+ .++++|.+++ .++
T Consensus 127 ~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~----~i~Gd~~~~~~L~~a~i~~a~~vi~-t~~ 201 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFK----VVYGSPTDAHVLAGLRVAAARSIIA-NLS 201 (565)
T ss_dssp CSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSE----EEESCTTCHHHHHHTTGGGCSEEEE-CSC
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCe----EEEeCCCCHHHHHhcCcccCCEEEE-eCC
Confidence 4579999999999999999999999999999999999888775 422 1222223333333 3456999887 444
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~s 107 (505)
+ .....+-.....+..-.+|.-..
T Consensus 202 D-~~n~~~~~~ar~~~~~~iiar~~ 225 (565)
T 4gx0_A 202 D-PDNANLCLTVRSLCQTPIIAVVK 225 (565)
T ss_dssp H-HHHHHHHHHHHTTCCCCEEEECS
T ss_pred c-HHHHHHHHHHHHhcCceEEEEEC
Confidence 3 33322222333444445555443
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.056 Score=51.46 Aligned_cols=82 Identities=13% Similarity=0.206 Sum_probs=54.3
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+|-|.|. |-+|..+|+.|++.|++|.+.+|++++.+++.++... + ...+..=+.+...+
T Consensus 11 ~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~----------------~~~~~~D~~~~~~~ 70 (261)
T 3n74_A 11 VALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGD----A----------------ALAVAADISKEADV 70 (261)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT----T----------------EEEEECCTTSHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC----c----------------eEEEEecCCCHHHH
Confidence 4556664 8899999999999999999999999887776653210 0 11222223333456
Q ss_pred HHHHHHHHhcCCCCcEEEecCCC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+.+++.+...+.+=+++|++...
T Consensus 71 ~~~~~~~~~~~g~id~li~~Ag~ 93 (261)
T 3n74_A 71 DAAVEAALSKFGKVDILVNNAGI 93 (261)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCcc
Confidence 66666666555555777776553
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.03 Score=54.31 Aligned_cols=85 Identities=9% Similarity=0.133 Sum_probs=55.0
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCCch
Q 010637 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGSP 85 (505)
Q Consensus 9 IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~~ 85 (505)
|-|.| .|-+|..+|+.|++.|++|.+.+|++++.++..++....+ .. ..++.++. +.+...
T Consensus 14 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------------~~--~~~~~~~~~Dv~~~~~ 77 (281)
T 3svt_A 14 YLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALG--------------AN--GGAIRYEPTDITNEDE 77 (281)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC--------------CS--SCEEEEEECCTTSHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--------------CC--CceEEEEeCCCCCHHH
Confidence 44555 6999999999999999999999999988776654321110 00 01233332 333345
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++++.....+=+++|++...
T Consensus 78 v~~~~~~~~~~~g~id~lv~nAg~ 101 (281)
T 3svt_A 78 TARAVDAVTAWHGRLHGVVHCAGG 101 (281)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 666677666655555788887654
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.045 Score=53.45 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=37.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~ 48 (505)
+++-|+| .|-+|..++..|++.|++|++++|++++.+++.+.
T Consensus 120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~ 162 (287)
T 1lu9_A 120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADS 162 (287)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHH
Confidence 4688999 99999999999999999999999999887776543
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.063 Score=51.03 Aligned_cols=97 Identities=10% Similarity=0.102 Sum_probs=56.5
Q ss_pred CCcCCCC-cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 1 MEASALS-RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 m~~~~~~-~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|...+.. +|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+..... .. .+.... .++.++
T Consensus 1 m~~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------~~-~~~~~~---~~~~~~ 68 (264)
T 2pd6_A 1 MQNRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGP--------GS-KEGPPR---GNHAAF 68 (264)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------------------CCEEE
T ss_pred CccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc--------Cc-cccccC---cceEEE
Confidence 4444433 466665 599999999999999999999999998877665432110 00 000000 223332
Q ss_pred E--cCCCchHHHHHHHHHhcCCCC-cEEEecCCC
Q 010637 79 L--VKAGSPVDQTIAALSEHMSPG-DCIIDGGNE 109 (505)
Q Consensus 79 ~--vp~~~~v~~vl~~l~~~l~~g-~iIId~st~ 109 (505)
. +.+...++.+++.+.....+= ++||++...
T Consensus 69 ~~D~~~~~~~~~~~~~~~~~~g~i~d~vi~~Ag~ 102 (264)
T 2pd6_A 69 QADVSEARAARCLLEQVQACFSRPPSVVVSCAGI 102 (264)
T ss_dssp ECCTTSHHHHHHHHHHHHHHHSSCCSEEEECCCC
T ss_pred EecCCCHHHHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 2 233345566666665444443 788887654
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.038 Score=54.27 Aligned_cols=102 Identities=12% Similarity=0.109 Sum_probs=71.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCce-----ecccHHHHHHHHhcCCC-CCC
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCII-----RAVFLDRIKKAYQRNPN-LAS 399 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gcii-----rs~lL~~i~~~~~~~~~-~~~ 399 (505)
+.++.+|+++|.+.+..+..++|++.+.++. ++|.++++++|+..-+| +|++.+ .+. +..
T Consensus 175 g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~------G~d~~~~~~~~~~~~~i~~~~~~s~~~~--------~~~~~~~ 240 (296)
T 3qha_A 175 GAGTRMKLARNMLTFTSYAAACEAMKLAEAA------GLDLQALGRVVRHTDALTGGPGAIMVRD--------NMKDLEP 240 (296)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHCCGGGGCCCS--------SCSCCCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHhhhcchHHHHhcCcccCHHhh--------chhhhhc
Confidence 4678999999999999999999999998853 39999998887742222 333322 111 112
Q ss_pred CcccHHHHH--HH-HhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010637 400 LVVDPEFAR--EM-VQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 400 ll~~~~~~~--~~-~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~ 443 (505)
.++-|.- .+ .-...+|+-++..|-+.|+|+|.+.++...|..
T Consensus 241 --~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~ 285 (296)
T 3qha_A 241 --DNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAA 285 (296)
T ss_dssp --TSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred --CCCCCchhhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 2333332 01 345567888999999999999999999885543
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.03 Score=58.13 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=69.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC---cEEEEe----CC----hH-HHHHHHH---hhcccCCCCe-eeeCCHHHHHhhc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF---PISVYN----RT----TS-KVDETLD---RAHREGQLPL-TGHYTPRDFVLSI 70 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~---~V~v~d----r~----~~-~~~~l~~---~~~~~g~~~i-~~~~s~~e~v~~l 70 (505)
.+|.|+|+|.+|.+++..|.+.|. +|+++| |+ .+ ..+.+.. ..... .+. ....++.+.+..
T Consensus 187 ~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~--~~~~~~~~~L~e~l~~- 263 (439)
T 2dvm_A 187 ITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKK--TNGENIEGGPQEALKD- 263 (439)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTT--SCTTCCCSSHHHHHTT-
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhc--cccccccccHHHHhcc-
Confidence 579999999999999999999998 899999 87 32 2111211 10000 000 013466777665
Q ss_pred CCCcEEEEEcCC--CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 71 QRPRSVIILVKA--GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 71 ~~advIil~vp~--~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
+|+||-++|. +..-+ .....+.++.+|+|.+|-.++...+ ...+.|...+
T Consensus 264 --aDVlInaT~~~~G~~~~----e~v~~m~~~~iVfDLynP~~t~~~~---~A~~~G~~iv 315 (439)
T 2dvm_A 264 --ADVLISFTRPGPGVIKP----QWIEKMNEDAIVFPLANPVPEILPE---EAKKAGARIV 315 (439)
T ss_dssp --CSEEEECSCCCSSSSCH----HHHTTSCTTCEEEECCSSSCSSCHH---HHHHHTCSEE
T ss_pred --CCEEEEcCCCccCCCCh----HHHHhcCCCCEEEECCCCCCcchHH---HHHHcCCeEE
Confidence 9999999987 53222 2334567888999996654433322 2333465554
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.042 Score=53.04 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=54.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+|-|.| .|-+|..+|+.|++.|++|.+.+|+.++.+++.+.... . ...+..=+.+...+
T Consensus 7 ~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~~~~~~ 66 (281)
T 3m1a_A 7 VWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPD-----------------R---AEAISLDVTDGERI 66 (281)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTT-----------------T---EEEEECCTTCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccC-----------------C---ceEEEeeCCCHHHH
Confidence 455555 59999999999999999999999998877666543110 0 12222223344456
Q ss_pred HHHHHHHHhcCCCCcEEEecCCC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+.+++++.....+=++||++...
T Consensus 67 ~~~~~~~~~~~g~id~lv~~Ag~ 89 (281)
T 3m1a_A 67 DVVAADVLARYGRVDVLVNNAGR 89 (281)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHhCCCCCEEEECCCc
Confidence 66666666555555788877653
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.047 Score=51.81 Aligned_cols=82 Identities=17% Similarity=0.236 Sum_probs=52.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
++-|.| .|-+|..+|+.|+++|++|.+.+|++++.+++.++... .. .++.++. +.+..
T Consensus 9 ~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~----------------~~---~~~~~~~~Dv~~~~ 69 (247)
T 2jah_A 9 VALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTA----------------AG---AKVHVLELDVADRQ 69 (247)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----------------TT---CCEEEEECCTTCHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh----------------cC---CcEEEEECCCCCHH
Confidence 455555 58999999999999999999999998877665543110 00 2233222 23334
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st 108 (505)
.++.+++.+...+.+=+++|++..
T Consensus 70 ~~~~~~~~~~~~~g~id~lv~nAg 93 (247)
T 2jah_A 70 GVDAAVASTVEALGGLDILVNNAG 93 (247)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 556666665554444577777654
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=95.31 E-value=0.075 Score=50.47 Aligned_cols=82 Identities=15% Similarity=0.253 Sum_probs=54.9
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... . ...+-.=+.+...
T Consensus 10 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~d~~~ 69 (248)
T 3op4_A 10 KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD-----------------N---GKGMALNVTNPES 69 (248)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG-----------------G---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-----------------c---ceEEEEeCCCHHH
Confidence 45555 5 58999999999999999999999999887766543211 0 1112222344455
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++.+.....+=|++|++...
T Consensus 70 v~~~~~~~~~~~g~iD~lv~nAg~ 93 (248)
T 3op4_A 70 IEAVLKAITDEFGGVDILVNNAGI 93 (248)
T ss_dssp HHHHHHHHHHHHCCCSEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 677777766655555788877654
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.14 Score=50.40 Aligned_cols=103 Identities=16% Similarity=0.235 Sum_probs=76.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
..++.+|.+.|.+.++.+..++|++.+.++. ++|.+++.++.+.| ...|++++.....+.+.+.. +.
T Consensus 185 g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~------~~ 251 (310)
T 3doj_A 185 GNGAKMKLIVNMIMGSMMNAFSEGLVLADKS------GLSSDTLLDILDLG-AMTNPMFKGKGPSMNKSSYP------PA 251 (310)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TSCHHHHHHHHHHS-TTCCHHHHHHHHHHHTTCCC------CS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-ccccHHHHHHhhhhhcCCCC------CC
Confidence 4678999999999999999999999998854 39999999999876 34677776654444332211 11
Q ss_pred HHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010637 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~ 443 (505)
| .+.....+++-++..|-+.|+|+|.+.++...|..
T Consensus 252 f--~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 287 (310)
T 3doj_A 252 F--PLKHQQKDMRLALALGDENAVSMPVAAAANEAFKK 287 (310)
T ss_dssp S--BHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred c--cHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 2 12233455688899999999999999998886654
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.011 Score=59.74 Aligned_cols=34 Identities=24% Similarity=0.592 Sum_probs=31.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|||.|||.|..|..+|..|+++|++|.+++|++.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 6899999999999999999999999999998754
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.087 Score=50.71 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=59.5
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCC
Q 010637 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
-|+.+| |.+-+|..+|+.|++.|.+|.+.+|++++.++..++....| .+++.+. +.+
T Consensus 9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g-------------------~~~~~~~~Dv~~ 69 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG-------------------YDAHGVAFDVTD 69 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT-------------------CCEEECCCCTTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------------CcEEEEEeeCCC
Confidence 478888 67889999999999999999999999988777655422111 2222222 234
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
...++.+++++.....+=|++|+....
T Consensus 70 ~~~v~~~~~~~~~~~G~iDiLVNNAG~ 96 (255)
T 4g81_D 70 ELAIEAAFSKLDAEGIHVDILINNAGI 96 (255)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHCCCCcEEEECCCC
Confidence 456777888887777666888886543
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.079 Score=50.54 Aligned_cols=91 Identities=14% Similarity=0.255 Sum_probs=56.2
Q ss_pred CCcCCCCc-EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 1 MEASALSR-IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 m~~~~~~~-IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|.+.+..| |-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++.. +.... .++.++
T Consensus 1 m~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------~~~~~---~~~~~~ 63 (260)
T 2z1n_A 1 MDLGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIA--------------SLVSG---AQVDIV 63 (260)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------HHSTT---CCEEEE
T ss_pred CCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------hcCCC---CeEEEE
Confidence 54444334 55555 5999999999999999999999999887766544210 00000 123322
Q ss_pred E--cCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 79 L--VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~--vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
. +.+...++.+++.+..... =+++|++...
T Consensus 64 ~~D~~~~~~v~~~~~~~~~~~g-id~lv~~Ag~ 95 (260)
T 2z1n_A 64 AGDIREPGDIDRLFEKARDLGG-ADILVYSTGG 95 (260)
T ss_dssp ECCTTCHHHHHHHHHHHHHTTC-CSEEEECCCC
T ss_pred EccCCCHHHHHHHHHHHHHhcC-CCEEEECCCC
Confidence 2 3333456666666665544 4777776553
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.066 Score=50.52 Aligned_cols=83 Identities=10% Similarity=0.112 Sum_probs=56.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
++-|.| .|-+|..+|+.|+++|++|.+.+|++++.+++.+..... . .++.++. +.+..
T Consensus 7 ~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~~ 67 (247)
T 3lyl_A 7 VALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK----------------G---FKARGLVLNISDIE 67 (247)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CceEEEEecCCCHH
Confidence 455555 599999999999999999999999998877665432110 0 2233222 33444
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++++.....+=+++|++...
T Consensus 68 ~~~~~~~~~~~~~~~id~li~~Ag~ 92 (247)
T 3lyl_A 68 SIQNFFAEIKAENLAIDILVNNAGI 92 (247)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5677777776665556788887654
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.013 Score=59.45 Aligned_cols=96 Identities=7% Similarity=0.139 Sum_probs=56.8
Q ss_pred CCCCcEEEEc-ccHHHHHHHHHHHhCC-CcEEEE-eCCh--HHHHHHHHh--------hcccCCCCeeeeCCHHHHHhhc
Q 010637 4 SALSRIGLAG-LAVMGQNLALNVAEKG-FPISVY-NRTT--SKVDETLDR--------AHREGQLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 4 ~~~~~IgIIG-lG~MG~~lA~~La~~G-~~V~v~-dr~~--~~~~~l~~~--------~~~~g~~~i~~~~s~~e~v~~l 70 (505)
++++|||||| .|..|.-|.+.|.++- .++... .++. .++...... +... ..+.. .+.+++
T Consensus 5 ~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~--~~v~~-~~~~~~---- 77 (359)
T 4dpk_A 5 RRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIAD--MEIKP-TDPKLM---- 77 (359)
T ss_dssp -CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHT--CBCEE-CCGGGC----
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhccccccccccccccc--ceEEe-CCHHHh----
Confidence 3446899999 6999999999888764 355533 4333 122221000 0000 01221 233332
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 71 QRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
..+|+||+|+|.+. ..+....+. ..|..|||.|+.+
T Consensus 78 ~~vDvvf~a~p~~~-s~~~a~~~~---~~G~~vIDlSa~~ 113 (359)
T 4dpk_A 78 DDVDIIFSPLPQGA-AGPVEEQFA---KEGFPVISNSPDH 113 (359)
T ss_dssp TTCCEEEECCCTTT-HHHHHHHHH---HTTCEEEECSSTT
T ss_pred cCCCEEEECCChHH-HHHHHHHHH---HCCCEEEEcCCCc
Confidence 34999999999974 445555443 4689999999865
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.013 Score=59.45 Aligned_cols=96 Identities=7% Similarity=0.139 Sum_probs=56.8
Q ss_pred CCCCcEEEEc-ccHHHHHHHHHHHhCC-CcEEEE-eCCh--HHHHHHHHh--------hcccCCCCeeeeCCHHHHHhhc
Q 010637 4 SALSRIGLAG-LAVMGQNLALNVAEKG-FPISVY-NRTT--SKVDETLDR--------AHREGQLPLTGHYTPRDFVLSI 70 (505)
Q Consensus 4 ~~~~~IgIIG-lG~MG~~lA~~La~~G-~~V~v~-dr~~--~~~~~l~~~--------~~~~g~~~i~~~~s~~e~v~~l 70 (505)
++++|||||| .|..|.-|.+.|.++- .++... .++. .++...... +... ..+.. .+.+++
T Consensus 5 ~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~--~~v~~-~~~~~~---- 77 (359)
T 4dpl_A 5 RRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIAD--MEIKP-TDPKLM---- 77 (359)
T ss_dssp -CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHT--CBCEE-CCGGGC----
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhccccccccccccccc--ceEEe-CCHHHh----
Confidence 3446899999 6999999999888764 355533 4333 122221000 0000 01221 233332
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 71 QRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 71 ~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
..+|+||+|+|.+. ..+....+. ..|..|||.|+.+
T Consensus 78 ~~vDvvf~a~p~~~-s~~~a~~~~---~~G~~vIDlSa~~ 113 (359)
T 4dpl_A 78 DDVDIIFSPLPQGA-AGPVEEQFA---KEGFPVISNSPDH 113 (359)
T ss_dssp TTCCEEEECCCTTT-HHHHHHHHH---HTTCEEEECSSTT
T ss_pred cCCCEEEECCChHH-HHHHHHHHH---HCCCEEEEcCCCc
Confidence 34999999999974 445555443 4689999999865
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.012 Score=59.33 Aligned_cols=41 Identities=12% Similarity=0.309 Sum_probs=35.4
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhC-CCcEEEEeCChHHHHHHH
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEK-GFPISVYNRTTSKVDETL 46 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~-G~~V~v~dr~~~~~~~l~ 46 (505)
+|+|.|.| .|.+|..++..|++. ||+|.+.+|++++...+.
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~ 66 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLV 66 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGG
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhc
Confidence 56899998 599999999999998 999999999987655443
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.069 Score=50.66 Aligned_cols=87 Identities=13% Similarity=0.196 Sum_probs=52.5
Q ss_pred CCcCCCCc-EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCCh-HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010637 1 MEASALSR-IGLAG-LAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 1 m~~~~~~~-IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
|..++..| |-|.| .|-+|..+|+.|++.|++|.+.+|++ ++.++..+.. . .++.+
T Consensus 1 M~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------------------~---~~~~~ 58 (249)
T 2ew8_A 1 MTQRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNL-------------------G---RRVLT 58 (249)
T ss_dssp --CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHT-------------------T---CCEEE
T ss_pred CCCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhc-------------------C---CcEEE
Confidence 44444334 55555 69999999999999999999999998 6654322110 0 12222
Q ss_pred EE--cCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 78 IL--VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 78 l~--vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+. +.+...++.+++.+...+.+=+++|++...
T Consensus 59 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 92 (249)
T 2ew8_A 59 VKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGI 92 (249)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EEeecCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 22 233345666666665555455778876653
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.069 Score=51.09 Aligned_cols=83 Identities=14% Similarity=0.196 Sum_probs=53.7
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++. +.+..
T Consensus 9 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~~ 69 (262)
T 1zem_A 9 VCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK----------------G---VEARSYVCDVTSEE 69 (262)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------T---SCEEEEECCTTCHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEEecCCCHH
Confidence 455555 589999999999999999999999988776654432100 0 2232222 23334
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++.+...+.+=+++|++...
T Consensus 70 ~~~~~~~~~~~~~g~id~lv~nAg~ 94 (262)
T 1zem_A 70 AVIGTVDSVVRDFGKIDFLFNNAGY 94 (262)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 5666666666555455788876653
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.061 Score=55.90 Aligned_cols=114 Identities=12% Similarity=0.084 Sum_probs=69.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHH--HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc--C
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKV--DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--K 81 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~--~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p 81 (505)
.++|.|||+|..|.+.|+.|++.|++|+++|...... ..+. .+. ++..-....+.++. +|.||++. |
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~-----~~~~g~~~~~~~~~---~d~vV~s~gi~ 75 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAV-----ERHTGSLNDEWLMA---ADLIVASPGIA 75 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTS-----CEEESSCCHHHHHT---CSEEEECTTSC
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCC-----EEEECCCcHHHhcc---CCEEEeCCCCC
Confidence 3589999999999999999999999999999765321 1122 221 23222222444444 89888863 3
Q ss_pred CCch-HHHHH----------HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeE
Q 010637 82 AGSP-VDQTI----------AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 82 ~~~~-v~~vl----------~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (505)
...+ +.... +-+...++...|-|-+||+.-.++.-+...++..|...
T Consensus 76 ~~~p~~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~ 133 (439)
T 2x5o_A 76 LAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV 133 (439)
T ss_dssp TTCHHHHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCE
Confidence 3222 22211 11222244445667777777766666777888777543
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.073 Score=51.62 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=54.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--EcCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~~ 84 (505)
.+-|.| .|-+|..+|+.|++.|++|.+.+|+.++.+++.+... .++.++ =+.+..
T Consensus 7 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dv~~~~ 64 (281)
T 3zv4_A 7 VALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHG----------------------GNAVGVVGDVRSLQ 64 (281)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTB----------------------TTEEEEECCTTCHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcC----------------------CcEEEEEcCCCCHH
Confidence 344555 6899999999999999999999999988776654311 122222 233334
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++++.....+=+++|++...
T Consensus 65 ~v~~~~~~~~~~~g~iD~lvnnAg~ 89 (281)
T 3zv4_A 65 DQKRAAERCLAAFGKIDTLIPNAGI 89 (281)
T ss_dssp HHHHHHHHHHHHHSCCCEEECCCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCc
Confidence 5666677666655555788887654
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.11 Score=49.41 Aligned_cols=85 Identities=14% Similarity=0.189 Sum_probs=55.8
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc--CCCch
Q 010637 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KAGSP 85 (505)
Q Consensus 9 IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p~~~~ 85 (505)
+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... .-. ..+..+..-+ .+...
T Consensus 15 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~--~~~~~~~~D~~~~~~~~ 78 (252)
T 3f1l_A 15 ILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINE--------------ETG--RQPQWFILDLLTCTSEN 78 (252)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------------HHS--CCCEEEECCTTTCCHHH
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------hcC--CCceEEEEecccCCHHH
Confidence 44555 58999999999999999999999999887766543211 000 0123333333 33345
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++++++.+.....+=+++|++...
T Consensus 79 ~~~~~~~~~~~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 79 CQQLAQRIAVNYPRLDGVLHNAGL 102 (252)
T ss_dssp HHHHHHHHHHHCSCCSEEEECCCC
T ss_pred HHHHHHHHHHhCCCCCEEEECCcc
Confidence 677777777666566888887654
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.081 Score=50.49 Aligned_cols=83 Identities=18% Similarity=0.308 Sum_probs=55.4
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--EcCC
Q 010637 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKA 82 (505)
Q Consensus 7 ~~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~ 82 (505)
.|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+
T Consensus 6 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~~ 66 (257)
T 3imf_A 6 EKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF----------------P---GQILTVQMDVRN 66 (257)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCS----------------T---TCEEEEECCTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCC
Confidence 344444 5 589999999999999999999999999887766542110 0 223322 2334
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
...++.+++.+.....+=+++|++..
T Consensus 67 ~~~v~~~~~~~~~~~g~id~lv~nAg 92 (257)
T 3imf_A 67 TDDIQKMIEQIDEKFGRIDILINNAA 92 (257)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 44566677766665555578887665
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.051 Score=51.51 Aligned_cols=83 Identities=11% Similarity=0.103 Sum_probs=55.7
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++.... . .++.++. +.+..
T Consensus 11 ~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~~ 71 (253)
T 3qiv_A 11 VGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD----------------G---GTAISVAVDVSDPE 71 (253)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CEEEEEECCTTSHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCCHH
Confidence 355556 599999999999999999999999998877766532110 1 2333332 23334
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++.+...+.+=+++|++...
T Consensus 72 ~~~~~~~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 72 SAKAMADRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 5666666666655556788887654
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.06 Score=55.51 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=76.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChHHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNR----------TTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPR 74 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~-v~dr----------~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~v~~l~~ad 74 (505)
++|.|.|.|.+|...|+.|.+.|.+|. +.|+ +.+.+.++.+... .+.. .-+.+++... .||
T Consensus 219 k~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g-----~v~~~~~~~~e~~~~--~~D 291 (419)
T 3aoe_E 219 ARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATG-----SLPRLDLAPEEVFGL--EAE 291 (419)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHS-----SCSCCCBCTTTGGGS--SCS
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhC-----Ccceeeccchhhhcc--Cce
Confidence 579999999999999999999999988 7888 7777777766432 1110 1122344331 489
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+++-|-....... .-.+.+ +=++|+...|... |.+..+.+.++|+.|+.
T Consensus 292 VliP~A~~n~i~~----~~A~~l-~ak~V~EgAN~p~--t~~A~~~L~~~Gi~~~P 340 (419)
T 3aoe_E 292 VLVLAAREGALDG----DRARQV-QAQAVVEVANFGL--NPEAEAYLLGKGALVVP 340 (419)
T ss_dssp EEEECSCTTCBCH----HHHTTC-CCSEEEECSTTCB--CHHHHHHHHHHTCEEEC
T ss_pred EEEeccccccccc----chHhhC-CceEEEECCCCcC--CHHHHHHHHHCCCEEEC
Confidence 9998876543222 223334 4479999998764 45667788999998873
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.012 Score=59.89 Aligned_cols=90 Identities=11% Similarity=0.161 Sum_probs=54.2
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCc---EEEEe-C-ChHHHHHHHHhhcccCCCCeeee-CCHHHHHhhcCCCcEEEE
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKGFP---ISVYN-R-TTSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G~~---V~v~d-r-~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~v~~l~~advIil 78 (505)
++||+||| .|..|.-|.+.|.+++|+ +.... + +..+.-.+ .+. ..... .+.++ ++.+|+||+
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~--~~~-----~~~~~~~~~~~----~~~~Dvvf~ 70 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKF--KDQ-----DITIEETTETA----FEGVDIALF 70 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEE--TTE-----EEEEEECCTTT----TTTCSEEEE
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCccee--cCC-----CceEeeCCHHH----hcCCCEEEE
Confidence 46899999 699999999999998774 33332 2 11110000 000 11111 12222 234999999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
|+|.+ ...+....+ +..|..|||.|+..
T Consensus 71 a~~~~-~s~~~a~~~---~~~G~~vIDlSa~~ 98 (366)
T 3pwk_A 71 SAGSS-TSAKYAPYA---VKAGVVVVDNTSYF 98 (366)
T ss_dssp CSCHH-HHHHHHHHH---HHTTCEEEECSSTT
T ss_pred CCChH-hHHHHHHHH---HHCCCEEEEcCCcc
Confidence 99875 344444444 34688999999864
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.015 Score=58.53 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=53.8
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCC---cEEEE-eCC-hHHHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEE
Q 010637 5 ALSRIGLAG-LAVMGQNLALNVAEKGF---PISVY-NRT-TSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVI 77 (505)
Q Consensus 5 ~~~~IgIIG-lG~MG~~lA~~La~~G~---~V~v~-dr~-~~~~~~l~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIi 77 (505)
|++||+|+| .|.+|+.+.+.|.+++| ++..+ +++ ..+.-.+. +. .+...+ ++++ .. .+|+||
T Consensus 5 m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~--g~-----~i~~~~~~~~~-~~---~~DvV~ 73 (340)
T 2hjs_A 5 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFA--ES-----SLRVGDVDSFD-FS---SVGLAF 73 (340)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEET--TE-----EEECEEGGGCC-GG---GCSEEE
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccC--Cc-----ceEEecCCHHH-hc---CCCEEE
Confidence 346899999 79999999999997765 44444 332 21100000 00 122211 2222 23 389999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+|+|.. ...+.+..+ +..|..+||.|..+
T Consensus 74 ~a~g~~-~s~~~a~~~---~~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 74 FAAAAE-VSRAHAERA---RAAGCSVIDLSGAL 102 (340)
T ss_dssp ECSCHH-HHHHHHHHH---HHTTCEEEETTCTT
T ss_pred EcCCcH-HHHHHHHHH---HHCCCEEEEeCCCC
Confidence 999875 334444443 34578899988765
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.087 Score=51.01 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=53.1
Q ss_pred cEEE-Ec-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCC
Q 010637 8 RIGL-AG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgI-IG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
|+.+ .| .|-+|..+|+.|++.|++|.+.+|++++.+++.++.. .++.++. +.+.
T Consensus 28 k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dv~d~ 85 (277)
T 4dqx_A 28 RVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIG----------------------SKAFGVRVDVSSA 85 (277)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC----------------------TTEEEEECCTTCH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC----------------------CceEEEEecCCCH
Confidence 4444 45 5899999999999999999999999988776654311 1222222 2333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..++.+++.+...+.+=+++|++...
T Consensus 86 ~~v~~~~~~~~~~~g~iD~lv~nAg~ 111 (277)
T 4dqx_A 86 KDAESMVEKTTAKWGRVDVLVNNAGF 111 (277)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 45666666665555455777776553
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.11 Score=49.04 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=33.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
+|-|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 13 ~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 53 (254)
T 2wsb_A 13 CAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQ 53 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 465665 5999999999999999999999999887665543
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.15 Score=50.00 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=35.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHH
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~ 46 (505)
.++|-|.|. |.+|..++..|++.|++|.+.+|++++.+.+.
T Consensus 11 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~ 52 (342)
T 1y1p_A 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ 52 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHH
Confidence 357999986 99999999999999999999999988766554
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.045 Score=54.03 Aligned_cols=100 Identities=11% Similarity=0.065 Sum_probs=70.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCc-eecccHHHHHHHHhcCCCCCCCcccHH
Q 010637 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCI-IRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 327 ~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gci-irs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
.++.+| .+.++.+..++|++.+.++. ++|.+++.++++.+.- .+|++++.....+.+....+. .
T Consensus 175 ~g~~~k----~~~~~~~~~~~Ea~~la~~~------Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-----~ 239 (306)
T 3l6d_A 175 FATVLH----AHAFAAMVTFFEAVGAGDRF------GLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGD-----Q 239 (306)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTT-----S
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCC-----c
Confidence 344555 67788999999999988753 3999999999987632 478887776554443321100 1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010637 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~ 443 (505)
|. +.-...+++.++..|-+.|+|+|.+.++...|..
T Consensus 240 ~~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 275 (306)
T 3l6d_A 240 AR--LDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQR 275 (306)
T ss_dssp SB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred cc--HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 11 1123356688999999999999999999887654
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.059 Score=51.47 Aligned_cols=83 Identities=12% Similarity=0.209 Sum_probs=55.3
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCC
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
|+.+| | .|-+|..+|+.|++.|++|.+.+|+.++.+++.+..... . .++.++. +.+.
T Consensus 13 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~d~ 73 (256)
T 3gaf_A 13 AVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA----------------G---GKAIGLECNVTDE 73 (256)
T ss_dssp CEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEECCCCCH
Confidence 45555 5 699999999999999999999999998877665432110 1 2333332 3344
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..++.+++.+.....+=+++|++...
T Consensus 74 ~~v~~~~~~~~~~~g~id~lv~nAg~ 99 (256)
T 3gaf_A 74 QHREAVIKAALDQFGKITVLVNNAGG 99 (256)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45666777666655555788876553
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.094 Score=49.22 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=37.3
Q ss_pred CCcCCC-CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 1 MEASAL-SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 1 m~~~~~-~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
|.+... ++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+++.+
T Consensus 1 M~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 3d3w_A 1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR 49 (244)
T ss_dssp CCCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CccccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 444332 35777775 999999999999999999999999887766554
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.029 Score=60.28 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=69.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~ 84 (505)
++|-|+|+|.+|..+|+.|.+.|++|.+.|.++++++++. . -+.+..+-+++.+ .++++|.++.+++++
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~-~-------~i~gD~t~~~~L~~agi~~ad~vi~~~~~d- 419 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDH-V-------VVYGDATVGQTLRQAGIDRASGIIVTTNDD- 419 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSS-C-------EEESCSSSSTHHHHHTTTSCSEEEECCSCH-
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcC-C-------EEEeCCCCHHHHHhcCccccCEEEEECCCc-
Confidence 5799999999999999999999999999999998865542 1 0222222233332 456799999999885
Q ss_pred hHHHHHHHHHhcCCCC-cEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 85 PVDQTIAALSEHMSPG-DCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g-~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
...-.+..++..+.+. .+|.-..+... .+.+...|+..+-
T Consensus 420 ~~ni~~~~~ak~l~~~~~iiar~~~~~~------~~~l~~~G~d~vi 460 (565)
T 4gx0_A 420 STNIFLTLACRHLHSHIRIVARANGEEN------VDQLYAAGADFVV 460 (565)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEEESSTTS------HHHHHHHTCSEEE
T ss_pred hHHHHHHHHHHHHCCCCEEEEEECCHHH------HHHHHHcCCCEEE
Confidence 3332333444445555 56655544332 2233445665543
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.11 Score=48.47 Aligned_cols=41 Identities=15% Similarity=0.294 Sum_probs=34.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 6 k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (234)
T 2ehd_A 6 GAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAA 47 (234)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3566676 5999999999999999999999999887766544
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.18 Score=48.81 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=26.2
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCC
Q 010637 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRT 38 (505)
Q Consensus 9 IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~ 38 (505)
+-|.| .|-+|..+|+.|++.|++|.+.+|+
T Consensus 14 ~lVTGas~gIG~aia~~la~~G~~V~~~~~~ 44 (286)
T 3uve_A 14 AFVTGAARGQGRSHAVRLAQEGADIIAVDIC 44 (286)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred EEEeCCCchHHHHHHHHHHHCCCeEEEEecc
Confidence 44555 5889999999999999999999987
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.098 Score=50.77 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=54.4
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCC
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++. +.+.
T Consensus 9 k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~~~ 69 (280)
T 3tox_A 9 KIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG----------------G---GEAAALAGDVGDE 69 (280)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTT----------------T---CCEEECCCCTTCH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEECCCCCH
Confidence 45555 5 589999999999999999999999998877766542110 0 2222222 2333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..++.+++.+.....+=+++|++...
T Consensus 70 ~~v~~~~~~~~~~~g~iD~lvnnAg~ 95 (280)
T 3tox_A 70 ALHEALVELAVRRFGGLDTAFNNAGA 95 (280)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45666666666555555778776653
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.093 Score=53.41 Aligned_cols=101 Identities=11% Similarity=0.114 Sum_probs=55.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC---CcEEEE-eC-ChHHHHHHHHhhcccCCC----------------Ceee--eCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG---FPISVY-NR-TTSKVDETLDRAHREGQL----------------PLTG--HYT 62 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G---~~V~v~-dr-~~~~~~~l~~~~~~~g~~----------------~i~~--~~s 62 (505)
++||||+|+|.+|+.+.+.|.+++ ++|... |+ +++....+.+.....|.+ .+.. ..+
T Consensus 2 ~ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 81 (380)
T 2d2i_A 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN 81 (380)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred CcEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecCC
Confidence 358999999999999999998873 566544 44 455444444321111100 1111 224
Q ss_pred HHHHH-hhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 63 PRDFV-LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 63 ~~e~v-~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++++. .. ..+|+||.|++..... +.....+.. ...++|||.+..
T Consensus 82 p~~l~w~~-~gvDvV~e~TG~f~s~-e~a~~hl~a-GakkVVIs~ps~ 126 (380)
T 2d2i_A 82 PLNLPWKE-WDIDLVIESTGVFVTA-EGASKHIQA-GAKKVLITAPGK 126 (380)
T ss_dssp GGGCCHHH-HTCCEEEECSSSCCBH-HHHHHHHHT-TCSEEEESSCCB
T ss_pred hHHCCccc-CCCCEEEECCCccccH-HHHHHHHHc-CCcEEEEcCCCC
Confidence 44432 10 0278888888876443 333333221 122457877653
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.058 Score=51.63 Aligned_cols=83 Identities=8% Similarity=0.090 Sum_probs=54.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
+|-|.| .|-+|..+|+.|++.|++|.+.+|+.++.+++.+..... . .++.++. +.+..
T Consensus 31 ~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~~ 91 (262)
T 3rkr_A 31 VAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA----------------G---GEAESHACDLSHSD 91 (262)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CEEEEEECCTTCHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh----------------C---CceeEEEecCCCHH
Confidence 355556 599999999999999999999999998877665432110 0 2222222 33334
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++.+.....+=++||++...
T Consensus 92 ~v~~~~~~~~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 92 AIAAFATGVLAAHGRCDVLVNNAGV 116 (262)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCc
Confidence 5666666665555555777776554
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.1 Score=49.94 Aligned_cols=69 Identities=10% Similarity=0.161 Sum_probs=48.8
Q ss_pred cEEEEcc-cHHHHHHHHHHHhC--CCcEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEcC
Q 010637 8 RIGLAGL-AVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp 81 (505)
+|-|.|. |.+|..++..|++. |++|.+.+|++++.+.+...+.. +.. ..+.+++.+.++.+|+||.+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGIT-----VRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCE-----EEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCe-----EEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 4788986 99999999999998 99999999998876655432211 111 1244555555566898887754
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.068 Score=51.50 Aligned_cols=83 Identities=13% Similarity=0.181 Sum_probs=54.7
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++. +.+..
T Consensus 6 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dv~d~~ 66 (264)
T 3tfo_A 6 VILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA----------------G---GTALAQVLDVTDRH 66 (264)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT----------------T---CEEEEEECCTTCHH
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEcCCCCHH
Confidence 354556 589999999999999999999999998877765432110 0 2233322 33344
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++.+.....+=+++|++...
T Consensus 67 ~v~~~~~~~~~~~g~iD~lVnnAG~ 91 (264)
T 3tfo_A 67 SVAAFAQAAVDTWGRIDVLVNNAGV 91 (264)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666666666555555778876543
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.05 Score=56.19 Aligned_cols=114 Identities=9% Similarity=0.088 Sum_probs=67.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCCh---------------HHHHHHHHhhcccCCC-CeeeeCCHHHHHhh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRTT---------------SKVDETLDRAHREGQL-PLTGHYTPRDFVLS 69 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~-v~dr~~---------------~~~~~l~~~~~~~g~~-~i~~~~s~~e~v~~ 69 (505)
++|.|.|.|++|...|+.|.+.|.+|. +.|.++ +.+.++.+....-.++ +.+.. +.+++..
T Consensus 213 ~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~~~~~~- 290 (421)
T 2yfq_A 213 AKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TDEEFWT- 290 (421)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------------
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-Cccchhc-
Confidence 579999999999999999999999988 678883 5555555432110000 00111 2233332
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 70 IQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 70 l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
..||+++-|.+.+....+. .+.+ +.++|+...|... |.+..+.+.++|+.|+.
T Consensus 291 -~~~DIliP~A~~n~i~~~~----A~~l-~ak~VvEgAN~P~--t~ea~~il~~~GI~~~P 343 (421)
T 2yfq_A 291 -KEYDIIVPAALENVITGER----AKTI-NAKLVCEAANGPT--TPEGDKVLTERGINLTP 343 (421)
T ss_dssp -----CEEECSCSSCSCHHH----HTTC-CCSEEECCSSSCS--CHHHHHHHHHHTCEEEC
T ss_pred -CCccEEEEcCCcCcCCccc----HHHc-CCeEEEeCCcccc--CHHHHHHHHHCCCEEEC
Confidence 1389998887665322222 2334 6789999888763 45666778888998763
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=94.85 E-value=0.042 Score=52.85 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=49.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC--CCcEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp 81 (505)
|+|-|.|. |.+|+.++..|++. |++|.+.+|++++.+.+...+.. +.. ..+.+++.+.++.+|+||.+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~-----~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVE-----VRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCE-----EEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCe-----EEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 46889986 99999999999998 99999999998876655432211 111 1244455555556888887654
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.027 Score=58.99 Aligned_cols=106 Identities=17% Similarity=0.142 Sum_probs=72.5
Q ss_pred CcEEEEccc----HHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGLA----VMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGlG----~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+|+|||++ .+|..+..+|.+.| +.|+.+|...+.+ . ++..+.|++|+.+. +|++++++|
T Consensus 9 ~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i---------~---G~~~y~sl~~lp~~---~Dlavi~vp 73 (457)
T 2csu_A 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV---------Q---GVKAYKSVKDIPDE---IDLAIIVVP 73 (457)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE---------T---TEECBSSTTSCSSC---CSEEEECSC
T ss_pred CeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeE---------C---CEeccCCHHHcCCC---CCEEEEecC
Confidence 469999998 89999999999985 6666666542211 1 36778888887765 899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCch--h-----HHHHHHHHHHCCCeEEe
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYL--N-----TERRIHEASQKGLLYLG 130 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~--~-----t~~~~~~l~~~gi~~i~ 130 (505)
.. .+.++++++...= -..+|+ .+.+.++ + .+++.+.+++.|+.+++
T Consensus 74 ~~-~~~~~v~e~~~~G-i~~vv~-~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viG 126 (457)
T 2csu_A 74 KR-FVKDTLIQCGEKG-VKGVVI-ITAGFGETGEEGKREEKELVEIAHKYGMRIIG 126 (457)
T ss_dssp HH-HHHHHHHHHHHHT-CCEEEE-CCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred HH-HHHHHHHHHHHcC-CCEEEE-ecCCCCccccccHHHHHHHHHHHHHcCCEEEc
Confidence 95 6777777766542 223343 3433322 2 44556666777888885
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.096 Score=52.57 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=30.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC---CcEEEE-eC-ChHHHHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG---FPISVY-NR-TTSKVDETL 46 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G---~~V~v~-dr-~~~~~~~l~ 46 (505)
+.||||+|.|.+|+.+.+.|.+++ ++|... |+ +++....+.
T Consensus 2 ~ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~ 47 (339)
T 3b1j_A 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLL 47 (339)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHh
Confidence 358999999999999999999873 566544 44 555554444
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.055 Score=50.67 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=47.8
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhC--CCcEEEEeCChHHHHHHHHhhcccCCCCeeee--CCHHHHHhhcCCCcEEEEEc
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~--~s~~e~v~~l~~advIil~v 80 (505)
+++|-|.| .|.+|..++..|++. |++|.+.+|++++.+.+.. . ..+... .+.+++.+.++.+|+||.+.
T Consensus 4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~-~-----~~~~~~D~~d~~~~~~~~~~~d~vi~~a 77 (253)
T 1xq6_A 4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-E-----ADVFIGDITDADSINPAFQGIDALVILT 77 (253)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-C-----TTEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCC-C-----eeEEEecCCCHHHHHHHHcCCCEEEEec
Confidence 46799998 599999999999999 8999999999887654411 0 011111 23344444444578888775
Q ss_pred C
Q 010637 81 K 81 (505)
Q Consensus 81 p 81 (505)
.
T Consensus 78 ~ 78 (253)
T 1xq6_A 78 S 78 (253)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.12 Score=52.56 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=60.1
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCC--c---EEEEeCChHH----HHHHHHh---hcccCCCCeeeeCCHHHHHhhcCC
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKGF--P---ISVYNRTTSK----VDETLDR---AHREGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G~--~---V~v~dr~~~~----~~~l~~~---~~~~g~~~i~~~~s~~e~v~~l~~ 72 (505)
.+||+||| +|.+|.+++..|+..+. + |.+++.+.++ ++-..-. ....-..++...++..+..+.
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~d--- 108 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFED--- 108 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCC---
Confidence 35899999 79999999999998875 2 7776543332 2221111 110000024455555555454
Q ss_pred CcEEEEEcC----CCch-----------HHHHHHHHHhcCCCCcEEEecCCCCchhHH
Q 010637 73 PRSVIILVK----AGSP-----------VDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (505)
Q Consensus 73 advIil~vp----~~~~-----------v~~vl~~l~~~l~~g~iIId~st~~~~~t~ 115 (505)
+|+||++-- ++.. ++.+...+..+..++.+|+..|| |.++.
T Consensus 109 aDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN--PvD~~ 164 (375)
T 7mdh_A 109 VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTN 164 (375)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHH
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--chhHH
Confidence 999999742 2221 22333445555457788888877 44443
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.1 Score=48.96 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=34.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+++.+
T Consensus 8 ~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 1cyd_A 8 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK 49 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45777775 999999999999999999999999887766554
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.061 Score=51.29 Aligned_cols=91 Identities=12% Similarity=0.184 Sum_probs=51.2
Q ss_pred CCcCCCCc-EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010637 1 MEASALSR-IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 1 m~~~~~~~-IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
|.+..++| +-|.| .|-+|..+|+.|++.|++|.+.+|+.+. .+.+.+.... . -.. ..++.
T Consensus 1 M~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-----------~---~~~---~~~~~ 63 (264)
T 3i4f_A 1 MSLGRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKD-----------V---EER---LQFVQ 63 (264)
T ss_dssp -----CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGG-----------G---GGG---EEEEE
T ss_pred CCcccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHh-----------c---CCc---eEEEE
Confidence 55543445 44555 5899999999999999999998666543 3333322110 0 001 12222
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
.=+.+...++.+++++.....+=+++|++..
T Consensus 64 ~Dl~~~~~v~~~~~~~~~~~g~id~lv~~Ag 94 (264)
T 3i4f_A 64 ADVTKKEDLHKIVEEAMSHFGKIDFLINNAG 94 (264)
T ss_dssp CCTTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred ecCCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 2234444566677766665555578887765
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.22 Score=48.20 Aligned_cols=86 Identities=12% Similarity=0.229 Sum_probs=54.4
Q ss_pred CCcE-EEEc-ccHHHHHHHHHHHhCCCcEEEEeC-ChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--c
Q 010637 6 LSRI-GLAG-LAVMGQNLALNVAEKGFPISVYNR-TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--V 80 (505)
Q Consensus 6 ~~~I-gIIG-lG~MG~~lA~~La~~G~~V~v~dr-~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--v 80 (505)
+.|+ -|.| .|-+|..+|+.|++.|++|.+.+| ++++.+.+.+.... ....++.++. +
T Consensus 24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~------------------~~~~~~~~~~~Dv 85 (281)
T 3v2h_A 24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAG------------------LSSGTVLHHPADM 85 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHT------------------TCSSCEEEECCCT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhh------------------ccCCcEEEEeCCC
Confidence 3344 4455 589999999999999999999999 55655554432210 0012333332 2
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.+...++.+++.+...+.+=+++|++...
T Consensus 86 ~d~~~v~~~~~~~~~~~g~iD~lv~nAg~ 114 (281)
T 3v2h_A 86 TKPSEIADMMAMVADRFGGADILVNNAGV 114 (281)
T ss_dssp TCHHHHHHHHHHHHHHTSSCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEECCCC
Confidence 33345677777777666566788887654
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.17 Score=49.06 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=55.2
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCCch
Q 010637 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGSP 85 (505)
Q Consensus 9 IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~~ 85 (505)
+-|.| .|-+|..+|+.|++.|++|.+.+|+.++.+++.++.... . .++.++. +.+...
T Consensus 31 ~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dv~d~~~ 91 (283)
T 3v8b_A 31 ALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGA----------------G---GQAIALEADVSDELQ 91 (283)
T ss_dssp EEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTT----------------T---CCEEEEECCTTCHHH
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCCHHH
Confidence 44555 589999999999999999999999998877766542110 0 2333332 334445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++++.....+=|++|++...
T Consensus 92 v~~~~~~~~~~~g~iD~lVnnAg~ 115 (283)
T 3v8b_A 92 MRNAVRDLVLKFGHLDIVVANAGI 115 (283)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 667777766655555788876554
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.079 Score=49.49 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=35.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~ 48 (505)
++|-|.| .|-+|..+|+.|+++|++|.+.+|++++.+++.+.
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~ 44 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNC 44 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 3466676 48999999999999999999999999988776653
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.062 Score=53.83 Aligned_cols=93 Identities=11% Similarity=0.040 Sum_probs=58.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeee---CCHHHHHhhc---CCCcEEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGH---YTPRDFVLSI---QRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~---~s~~e~v~~l---~~advIil~ 79 (505)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.+.. .... .+..+.+..+ ...|+||-+
T Consensus 169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~-----~~~~~~~~~~~~~v~~~~~g~g~D~vid~ 243 (348)
T 2d8a_A 169 KSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGAD-----YVINPFEEDVVKEVMDITDGNGVDVFLEF 243 (348)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCS-----EEECTTTSCHHHHHHHHTTTSCEEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC-----EEECCCCcCHHHHHHHHcCCCCCCEEEEC
Confidence 369999999999999999989999 999999999988777655432 1111 1222222221 136888877
Q ss_pred cCCCchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+..... +....+.+.++-.++..+.
T Consensus 244 ~g~~~~----~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 244 SGAPKA----LEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp SCCHHH----HHHHHHHEEEEEEEEECCC
T ss_pred CCCHHH----HHHHHHHHhcCCEEEEEcc
Confidence 764322 2333344445555555543
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.19 Score=48.10 Aligned_cols=86 Identities=10% Similarity=0.139 Sum_probs=55.7
Q ss_pred CcEE-EEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCC
Q 010637 7 SRIG-LAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~Ig-IIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
.|+. |.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... .... .++.++. +.+
T Consensus 8 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--------------~~~~---~~~~~~~~Dv~~ 70 (265)
T 3lf2_A 8 EAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQ--------------RFPG---ARLFASVCDVLD 70 (265)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------------HSTT---CCEEEEECCTTC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--------------hcCC---ceEEEEeCCCCC
Confidence 3444 445 58999999999999999999999999887766543211 0000 1233332 334
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
...++.+++.+...+.+=+++|++...
T Consensus 71 ~~~v~~~~~~~~~~~g~id~lvnnAg~ 97 (265)
T 3lf2_A 71 ALQVRAFAEACERTLGCASILVNNAGQ 97 (265)
T ss_dssp HHHHHHHHHHHHHHHCSCSEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 445666777766655555788887654
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.042 Score=52.98 Aligned_cols=38 Identities=18% Similarity=0.473 Sum_probs=31.1
Q ss_pred CcEE-EEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHH
Q 010637 7 SRIG-LAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDE 44 (505)
Q Consensus 7 ~~Ig-IIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~ 44 (505)
.|+. |.| .|-+|..+|+.|++.|++|.+.+|+.++.++
T Consensus 16 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~ 55 (266)
T 3p19_A 16 KKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKA 55 (266)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 3444 455 5899999999999999999999999876543
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.1 Score=52.41 Aligned_cols=100 Identities=9% Similarity=0.106 Sum_probs=56.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHh---C-CCcEEEE-eC-ChHHHHHHHHhhcccCCC----------------Ceeee--C
Q 010637 6 LSRIGLAGLAVMGQNLALNVAE---K-GFPISVY-NR-TTSKVDETLDRAHREGQL----------------PLTGH--Y 61 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~---~-G~~V~v~-dr-~~~~~~~l~~~~~~~g~~----------------~i~~~--~ 61 (505)
++||||+|.|.+|+.+.+.|.+ + .++|... ++ +++....+.+.....|.+ .+... .
T Consensus 2 ~ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~ 81 (339)
T 2x5j_O 2 TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHER 81 (339)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred CeEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEecC
Confidence 3589999999999999999998 5 5666544 44 455555555311100000 12222 2
Q ss_pred CHHHHH-hhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 62 TPRDFV-LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 62 s~~e~v-~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+++++. .. ..+|+||.|+|.....+ .....+.. ....+|||.+.
T Consensus 82 dp~~l~~~~-~~vDvV~e~tg~~~s~e-~a~~~l~~-GakkVVId~~a 126 (339)
T 2x5j_O 82 SLQSLPWRE-LGVDVVLDCTGVYGSRE-HGEAHIAA-GAKKVLFSHPG 126 (339)
T ss_dssp SGGGCCHHH-HTCSEEEECSSSCCSHH-HHHHHHHT-TCSEEEESSCC
T ss_pred ChHHCcccc-cCCCEEEECCCccccHH-HHHHHHHc-CCCEEEEeccc
Confidence 444431 10 03899999999875433 33333321 12236888776
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.13 Score=49.62 Aligned_cols=82 Identities=12% Similarity=0.110 Sum_probs=53.4
Q ss_pred cEEEEcc-cH--HHHHHHHHHHhCCCcEEEEeCCh--HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 8 RIGLAGL-AV--MGQNLALNVAEKGFPISVYNRTT--SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 8 ~IgIIGl-G~--MG~~lA~~La~~G~~V~v~dr~~--~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
+|-|.|. |. +|..+|+.|++.|++|.+.+|+. +..+++.+... ....+..=+.+
T Consensus 28 ~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~---------------------~~~~~~~Dl~~ 86 (280)
T 3nrc_A 28 KILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFN---------------------PAAVLPCDVIS 86 (280)
T ss_dssp EEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGC---------------------CSEEEECCTTC
T ss_pred EEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcC---------------------CceEEEeecCC
Confidence 4556675 56 99999999999999999999987 44444433211 01222222344
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
...++.+++++.....+=+++|++....
T Consensus 87 ~~~v~~~~~~~~~~~g~id~li~nAg~~ 114 (280)
T 3nrc_A 87 DQEIKDLFVELGKVWDGLDAIVHSIAFA 114 (280)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 4566777777766665667888776543
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.28 Score=49.14 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=37.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA 49 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~ 49 (505)
.+|.|+|+|.+|...++.+...|. +|.+.++++++.+.+.+.+
T Consensus 173 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG 216 (356)
T 1pl8_A 173 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIG 216 (356)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC
Confidence 469999999999998888888898 8999999999887776554
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.011 Score=59.46 Aligned_cols=90 Identities=9% Similarity=0.100 Sum_probs=54.5
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCC---CcEEEEe-C-ChHHHHHHHHhhcccCCCCeeeeC-CHHHHHhhcCCCcEEEE
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKG---FPISVYN-R-TTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G---~~V~v~d-r-~~~~~~~l~~~~~~~g~~~i~~~~-s~~e~v~~l~~advIil 78 (505)
++||+|+| .|.+|..+.+.|.+++ ++|..++ + +..+.-.+. +. .+...+ +++.+ . .+|+||+
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~--~~-----~i~~~~~~~~~~-~---~vDvVf~ 71 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFN--GK-----TVRVQNVEEFDW-S---QVHIALF 71 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEET--TE-----EEEEEEGGGCCG-G---GCSEEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeec--Cc-----eeEEecCChHHh-c---CCCEEEE
Confidence 46899999 8999999999999884 3565554 2 221100000 00 122211 22222 3 3899999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
|+|.. ...+....+ +..|..+||.|+.+
T Consensus 72 a~g~~-~s~~~a~~~---~~~G~~vId~s~~~ 99 (336)
T 2r00_A 72 SAGGE-LSAKWAPIA---AEAGVVVIDNTSHF 99 (336)
T ss_dssp CSCHH-HHHHHHHHH---HHTTCEEEECSSTT
T ss_pred CCCch-HHHHHHHHH---HHcCCEEEEcCCcc
Confidence 99885 334444443 34688999998864
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.092 Score=50.64 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=51.5
Q ss_pred cEEE-Ec-ccHHHHHHHHHHHhCCCcEEEEeC-------------ChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCC
Q 010637 8 RIGL-AG-LAVMGQNLALNVAEKGFPISVYNR-------------TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 8 ~IgI-IG-lG~MG~~lA~~La~~G~~V~v~dr-------------~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~ 72 (505)
|+.+ .| .|-+|..+|+.|++.|++|.+.+| +.++.++..+... .. .
T Consensus 12 k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--~ 72 (277)
T 3tsc_A 12 RVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVE-----------------AA--N 72 (277)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHH-----------------HT--T
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHH-----------------hc--C
Confidence 4444 45 589999999999999999999998 4444444332211 00 1
Q ss_pred CcEEEEE--cCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 73 PRSVIIL--VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 73 advIil~--vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.++. +.+...++.+++++...+.+=+++|++...
T Consensus 73 ~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~ 111 (277)
T 3tsc_A 73 RRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGV 111 (277)
T ss_dssp CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2333333 333345666666666655555788876654
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.098 Score=51.19 Aligned_cols=83 Identities=13% Similarity=0.194 Sum_probs=51.1
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCC------------hHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCC
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRT------------TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~------------~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~a 73 (505)
|+.+| | .|-+|..+|+.|++.|++|.+.+|+ ++++++..+... .. ..
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--~~ 89 (299)
T 3t7c_A 29 KVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVE-----------------AL--GR 89 (299)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHH-----------------HT--TC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHH-----------------hc--CC
Confidence 45544 5 5899999999999999999999987 444433332210 00 12
Q ss_pred cEEEEE--cCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 74 RSVIIL--VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 74 dvIil~--vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.++. +.+...++.+++.+...+.+=+++|++...
T Consensus 90 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 127 (299)
T 3t7c_A 90 RIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAAL 127 (299)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 333333 233345666666666555555777776543
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=94.64 E-value=0.11 Score=49.61 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=52.7
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--EcCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~~ 84 (505)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++.. .++.++ =+.+..
T Consensus 10 ~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dv~~~~ 67 (255)
T 4eso_A 10 KAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG----------------------PRVHALRSDIADLN 67 (255)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG----------------------GGEEEEECCTTCHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC----------------------CcceEEEccCCCHH
Confidence 355555 5899999999999999999999999988777654321 122222 223334
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++.+...+.+=+++|++...
T Consensus 68 ~v~~~~~~~~~~~g~id~lv~nAg~ 92 (255)
T 4eso_A 68 EIAVLGAAAGQTLGAIDLLHINAGV 92 (255)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 5666666665555445677776543
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.098 Score=50.54 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=55.6
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.|+.+| | .|-+|..+|+.|++.|++|.+.+|+.++.+++.++.. .. ...+-.=+.+..
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~d~~ 87 (272)
T 4dyv_A 28 KKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG-----------------DD---ALCVPTDVTDPD 87 (272)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT-----------------SC---CEEEECCTTSHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----------------CC---eEEEEecCCCHH
Confidence 356565 5 6899999999999999999999999988776654321 00 222222234444
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++.+.....+=|++|++...
T Consensus 88 ~v~~~~~~~~~~~g~iD~lVnnAg~ 112 (272)
T 4dyv_A 88 SVRALFTATVEKFGRVDVLFNNAGT 112 (272)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666776666655555788876554
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.12 Score=49.32 Aligned_cols=83 Identities=10% Similarity=0.178 Sum_probs=53.9
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
+|-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++... .. .++.++. +.+..
T Consensus 11 ~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~~~D~~~~~ 71 (260)
T 2ae2_A 11 TALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS----------------KG---FKVEASVCDLSSRS 71 (260)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----------------TT---CEEEEEECCTTCHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----------------cC---CcEEEEEcCCCCHH
Confidence 455566 58999999999999999999999998876655432110 01 2333222 23334
Q ss_pred hHHHHHHHHHhcC-CCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHM-SPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l-~~g~iIId~st~ 109 (505)
.++.+++.+...+ .+=+++|++...
T Consensus 72 ~~~~~~~~~~~~~~g~id~lv~~Ag~ 97 (260)
T 2ae2_A 72 ERQELMNTVANHFHGKLNILVNNAGI 97 (260)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCCEEEECCCC
Confidence 5666666666655 455788877653
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.17 Score=44.62 Aligned_cols=120 Identities=11% Similarity=0.040 Sum_probs=73.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChHHHHHHHHhhcccCCC-CeeeeCCHHHHHhhc-CCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQL-PLTGHYTPRDFVLSI-QRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~-~i~~~~s~~e~v~~l-~~advIil~vp~ 82 (505)
.+|--||+|. | .++..+++. +.+|+++|.+++.++...+.....+.. ++....+..+..... ...|+|++.-+.
T Consensus 27 ~~vldiG~G~-G-~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~~ 104 (178)
T 3hm2_A 27 ETLWDIGGGS-G-SIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGL 104 (178)
T ss_dssp EEEEEESTTT-T-HHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-T
T ss_pred CeEEEeCCCC-C-HHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCcc
Confidence 3688999996 4 455566665 679999999998877766542221100 233334443333322 458999977655
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
.. ..+++.+...|++|..++-. ...+.........+...+..+...
T Consensus 105 ~~--~~~l~~~~~~L~~gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 105 TA--PGVFAAAWKRLPVGGRLVAN-AVTVESEQMLWALRKQFGGTISSF 150 (178)
T ss_dssp TC--TTHHHHHHHTCCTTCEEEEE-ECSHHHHHHHHHHHHHHCCEEEEE
T ss_pred cH--HHHHHHHHHhcCCCCEEEEE-eeccccHHHHHHHHHHcCCeeEEE
Confidence 43 56778888888887666532 233345555666677777655544
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.1 Score=53.04 Aligned_cols=93 Identities=14% Similarity=0.205 Sum_probs=54.4
Q ss_pred CCcEEEEc-ccHHHHHHHH-HHHhCCCc---EEEEeC-ChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAG-LAVMGQNLAL-NVAEKGFP---ISVYNR-TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~-~La~~G~~---V~v~dr-~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|+||||+| .|.+|..+.+ .|.+++++ +..+.. +..+ .+....... ..+....+++++ +. +|+||+|
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~--~v~~~~g~~--i~~~~~~~~~~~-~~---~DvVf~a 72 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ--AAPSFGGTT--GTLQDAFDLEAL-KA---LDIIVTC 72 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS--BCCGGGTCC--CBCEETTCHHHH-HT---CSEEEEC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCC--CccccCCCc--eEEEecCChHHh-cC---CCEEEEC
Confidence 36899999 8999999999 56666653 344433 2211 010000000 112223345554 44 9999999
Q ss_pred cCCCchHHHHHHHHHhcCCCCc--EEEecCCCC
Q 010637 80 VKAGSPVDQTIAALSEHMSPGD--CIIDGGNEW 110 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~--iIId~st~~ 110 (505)
+|.+ ...+....+.+ .|. +|||.|+.+
T Consensus 73 ~g~~-~s~~~a~~~~~---~G~k~vVID~ss~~ 101 (367)
T 1t4b_A 73 QGGD-YTNEIYPKLRE---SGWQGYWIDAASSL 101 (367)
T ss_dssp SCHH-HHHHHHHHHHH---TTCCCEEEECSSTT
T ss_pred CCch-hHHHHHHHHHH---CCCCEEEEcCChhh
Confidence 9875 34445454443 454 999998763
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.22 Score=47.44 Aligned_cols=93 Identities=13% Similarity=0.025 Sum_probs=57.5
Q ss_pred CCcCCCC-cEEEEcc-cH--HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010637 1 MEASALS-RIGLAGL-AV--MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 1 m~~~~~~-~IgIIGl-G~--MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
|.+++.. ++-|.|. |. +|..+|+.|++.|++|.+.+|+....+.+.+..... .. .+..++
T Consensus 1 M~~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---------------~~-~~~~~~ 64 (266)
T 3oig_A 1 MNFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTL---------------DR-NDSIIL 64 (266)
T ss_dssp CCSCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTS---------------SS-CCCEEE
T ss_pred CccccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhc---------------CC-CCceEE
Confidence 5444433 4666676 66 999999999999999999999875444333221100 00 012333
Q ss_pred EEEcCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..=+.+...++++++.+.....+=+++|++...
T Consensus 65 ~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~ 97 (266)
T 3oig_A 65 PCDVTNDAEIETCFASIKEQVGVIHGIAHCIAF 97 (266)
T ss_dssp ECCCSSSHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCeeEEEEcccc
Confidence 333455567788887777655555778776554
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.17 Score=47.88 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=52.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.. + ...+..=+.+...
T Consensus 6 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~------~----------------~~~~~~D~~~~~~ 63 (245)
T 1uls_A 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV------G----------------AHPVVMDVADPAS 63 (245)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT------T----------------CEEEECCTTCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc------C----------------CEEEEecCCCHHH
Confidence 3466666 599999999999999999999999988776654321 0 1122222233345
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++++...+.+=+++|++...
T Consensus 64 ~~~~~~~~~~~~g~id~lvn~Ag~ 87 (245)
T 1uls_A 64 VERGFAEALAHLGRLDGVVHYAGI 87 (245)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 566666655544445777776543
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.15 Score=53.34 Aligned_cols=114 Identities=14% Similarity=0.177 Sum_probs=77.2
Q ss_pred CcEEEEcccH----------HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc----------ccCCCCeeeeCCHHHH
Q 010637 7 SRIGLAGLAV----------MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH----------REGQLPLTGHYTPRDF 66 (505)
Q Consensus 7 ~~IgIIGlG~----------MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~----------~~g~~~i~~~~s~~e~ 66 (505)
.+|+|+|+.. -...++..|.+.|.+|.+||......+ +..... .. ++..+.++.+.
T Consensus 330 ~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 405 (467)
T 2q3e_A 330 KKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQ-IVVDLSHPGVSEDDQVSR---LVTISKDPYEA 405 (467)
T ss_dssp CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHH-HHHHHCC------CHHHH---HEEECSSHHHH
T ss_pred CEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHH-HhhhhccccccccccccC---ceeecCCHHHH
Confidence 5799999975 788999999999999999998633211 111100 00 25566788888
Q ss_pred HhhcCCCcEEEEEcCCCchHHHH-HHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 67 VLSIQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~v-l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
++. +|.|++++... ..+.. .+.+...+....+|+|+-|.... ..+.+...|+.|.+.+
T Consensus 406 ~~~---ad~~vi~t~~~-~f~~~~~~~~~~~~~~~~~i~D~r~~~~~----~~~~~~~~g~~~~~ig 464 (467)
T 2q3e_A 406 CDG---AHAVVICTEWD-MFKELDYERIHKKMLKPAFIFDGRRVLDG----LHNELQTIGFQIETIG 464 (467)
T ss_dssp HTT---CSEEEECSCCG-GGGGSCHHHHHHHSCSSCEEEESSCTTTT----CHHHHHHHTCEEEETT
T ss_pred HhC---CcEEEEecCCh-hhhcCCHHHHHHhcCCCCEEEeCCCcCCc----hHHHHHhcCcEEEEeC
Confidence 776 99999999875 33322 34555556555669999998743 1223455688888764
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.094 Score=49.68 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=33.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
+|-|.| .|.+|..+++.|+++|++|.+.+|++++.+.+.+
T Consensus 15 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 55 (260)
T 3awd_A 15 VAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVE 55 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 466666 5999999999999999999999999887665443
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.11 Score=48.83 Aligned_cols=94 Identities=16% Similarity=0.186 Sum_probs=60.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE-EEcCC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI-ILVKA 82 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi-l~vp~ 82 (505)
.||.+|+|+ |.||+.++......|+++. .+|+..+ . ++ ..+|++| +..|+
T Consensus 12 ~~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~~----------~----------~l-------~~~DVvIDFT~P~ 64 (228)
T 1vm6_A 12 HMKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV----------E----------EL-------DSPDVVIDFSSPE 64 (228)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE----------E----------EC-------SCCSEEEECSCGG
T ss_pred cceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCCc----------c----------cc-------cCCCEEEECCCHH
Confidence 368999997 9999999887777888865 5576531 0 11 1389999 55554
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
.+...++... ..|.-+|-++|+.........+.+.++ +..+-+|
T Consensus 65 --a~~~~~~~~~---~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vv~ap 108 (228)
T 1vm6_A 65 --ALPKTVDLCK---KYRAGLVLGTTALKEEHLQMLRELSKE-VPVVQAY 108 (228)
T ss_dssp --GHHHHHHHHH---HHTCEEEECCCSCCHHHHHHHHHHTTT-SEEEECS
T ss_pred --HHHHHHHHHH---HcCCCEEEeCCCCCHHHHHHHHHHHhh-CCEEEec
Confidence 4454544433 356778888888766555555555444 5555555
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.073 Score=55.55 Aligned_cols=109 Identities=14% Similarity=0.247 Sum_probs=76.7
Q ss_pred CcEEEEccc----------HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010637 7 SRIGLAGLA----------VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 7 ~~IgIIGlG----------~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
.+|+|+|+. .=...++..|.+.|.+|.+||.... +....... ++..+.+++++++. +|.|
T Consensus 323 ~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~--~~~~~~~~-----~~~~~~~~~~~~~~---ad~v 392 (446)
T 4a7p_A 323 KTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGV--EQASKMLT-----DVEFVENPYAAADG---ADAL 392 (446)
T ss_dssp CEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCH--HHHGGGCS-----SCCBCSCHHHHHTT---BSEE
T ss_pred CEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCC--HhHHHhcC-----CceEecChhHHhcC---CCEE
Confidence 579999997 5678899999999999999998763 22222211 35667888888887 9999
Q ss_pred EEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
++++...+.-.--.+.+...+ ++.+|+|+-|..... .+++.|+.|.+.+
T Consensus 393 vi~t~~~~f~~~d~~~~~~~~-~~~~i~D~r~~~~~~------~~~~~g~~y~~iG 441 (446)
T 4a7p_A 393 VIVTEWDAFRALDLTRIKNSL-KSPVLVDLRNIYPPA------ELERAGLQYTGVG 441 (446)
T ss_dssp EECSCCTTTTSCCHHHHHTTB-SSCBEECSSCCSCHH------HHHHTTCBCCCSS
T ss_pred EEeeCCHHhhcCCHHHHHHhc-CCCEEEECCCCCCHH------HHHhcCCEEEEec
Confidence 999987532111134555555 357899999987532 3456788887654
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.1 Score=49.90 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=56.2
Q ss_pred cEEEEcc-c-HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCC
Q 010637 8 RIGLAGL-A-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgIIGl-G-~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
++-|.|. | -+|..+|+.|+++|++|.+.+|+.++.+++.++.... ...++.++. +.+.
T Consensus 24 ~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------------------~~~~~~~~~~Dl~~~ 85 (266)
T 3o38_A 24 VVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADL------------------GLGRVEAVVCDVTST 85 (266)
T ss_dssp EEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT------------------CSSCEEEEECCTTCH
T ss_pred EEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc------------------CCCceEEEEeCCCCH
Confidence 4667788 8 4999999999999999999999998877665432110 002333332 3344
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..++.+++.+.....+=+++|++...
T Consensus 86 ~~v~~~~~~~~~~~g~id~li~~Ag~ 111 (266)
T 3o38_A 86 EAVDALITQTVEKAGRLDVLVNNAGL 111 (266)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 45666676666555555788877654
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.14 Score=49.46 Aligned_cols=82 Identities=12% Similarity=0.147 Sum_probs=53.4
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... + ...+-.=+.+.+.
T Consensus 30 k~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~----~----------------~~~~~~Dv~d~~~ 89 (277)
T 3gvc_A 30 KVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGC----G----------------AAACRVDVSDEQQ 89 (277)
T ss_dssp CEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCS----S----------------CEEEECCTTCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC----c----------------ceEEEecCCCHHH
Confidence 45555 5 68999999999999999999999999887766543210 0 1122222334445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++.+...+.+=|++|++...
T Consensus 90 v~~~~~~~~~~~g~iD~lvnnAg~ 113 (277)
T 3gvc_A 90 IIAMVDACVAAFGGVDKLVANAGV 113 (277)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666665555555777776543
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.1 Score=50.50 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=55.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++.... . .+...+..=+.+...+
T Consensus 34 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~-~~~~~~~~Dl~d~~~v 96 (276)
T 3r1i_A 34 RALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV----------------G-GKALPIRCDVTQPDQV 96 (276)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT----------------T-CCCEEEECCTTCHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C-CeEEEEEcCCCCHHHH
Confidence 355555 589999999999999999999999998877665432110 0 0022222223344456
Q ss_pred HHHHHHHHhcCCCCcEEEecCCC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+++++++.....+=+++|++...
T Consensus 97 ~~~~~~~~~~~g~iD~lvnnAg~ 119 (276)
T 3r1i_A 97 RGMLDQMTGELGGIDIAVCNAGI 119 (276)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 67777666655555788876654
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.032 Score=56.80 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=31.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||.|..|..+|..|+++|++|.++++++.
T Consensus 27 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 60 (398)
T 2xdo_A 27 KNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4799999999999999999999999999998764
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.013 Score=59.76 Aligned_cols=99 Identities=13% Similarity=0.032 Sum_probs=65.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh-------HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT-------SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~-------~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
..||-|+|.|..|.++|+.+...|. +|+++|++- +.+..+.+.....-. ......+++|+++. +|++|
T Consensus 188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~-~~~~~~~L~eav~~---ADV~I 263 (398)
T 2a9f_A 188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTN-REFKSGTLEDALEG---ADIFI 263 (398)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHS-CTTCCCSCSHHHHT---TCSEE
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccC-cccchhhHHHHhcc---CCEEE
Confidence 3589999999999999999999998 999999873 112222211110000 01124578888887 99877
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
=+..++... +++...+.++.||+++||-.|+
T Consensus 264 G~Sapgl~T----~EmVk~Ma~~pIIfalsNPt~E 294 (398)
T 2a9f_A 264 GVSAPGVLK----AEWISKMAARPVIFAMANPIPE 294 (398)
T ss_dssp ECCSTTCCC----HHHHHTSCSSCEEEECCSSSCS
T ss_pred ecCCCCCCC----HHHHHhhCCCCEEEECCCCCcc
Confidence 665433333 4455557789999999997653
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.42 E-value=0.15 Score=47.97 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=54.3
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc--CCCch
Q 010637 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KAGSP 85 (505)
Q Consensus 9 IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p~~~~ 85 (505)
+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++.... .. ....++..-+ .+...
T Consensus 17 vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---------------~~-~~~~~~~~d~d~~~~~~ 80 (247)
T 3i1j_A 17 ILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSA---------------GQ-PQPLIIALNLENATAQQ 80 (247)
T ss_dssp EEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT---------------TS-CCCEEEECCTTTCCHHH
T ss_pred EEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhc---------------CC-CCceEEEeccccCCHHH
Confidence 44556 599999999999999999999999998877765532110 00 0022222222 33345
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++.+++.+.....+=+++|++...
T Consensus 81 ~~~~~~~~~~~~g~id~lv~nAg~ 104 (247)
T 3i1j_A 81 YRELAARVEHEFGRLDGLLHNASI 104 (247)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHhCCCCCEEEECCcc
Confidence 666666666555555788877654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.17 Score=48.33 Aligned_cols=85 Identities=13% Similarity=0.196 Sum_probs=53.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
+|-|.| .|-+|..+++.|++.|++|.+.+|++++.+++.+..... . .. .++.++. +.+..
T Consensus 9 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----~----------~~---~~~~~~~~D~~~~~ 71 (267)
T 2gdz_A 9 VALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ----F----------EP---QKTLFIQCDVADQQ 71 (267)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT----S----------CG---GGEEEEECCTTSHH
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh----c----------CC---CceEEEecCCCCHH
Confidence 466666 599999999999999999999999988766544321100 0 00 1222222 23334
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++.+...+.+=+++|++...
T Consensus 72 ~v~~~~~~~~~~~g~id~lv~~Ag~ 96 (267)
T 2gdz_A 72 QLRDTFRKVVDHFGRLDILVNNAGV 96 (267)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666666665555455788877654
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.11 Score=49.84 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=54.9
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCC
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.+++.++.... ...++.++. +.+.
T Consensus 11 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------------------~~~~~~~~~~Dv~~~ 72 (262)
T 3pk0_A 11 RSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQL------------------GSGKVIGVQTDVSDR 72 (262)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT------------------SSSCEEEEECCTTSH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh------------------CCCcEEEEEcCCCCH
Confidence 45555 5 699999999999999999999999998877665432110 002233322 2333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..++.+++.+...+.+=+++|++...
T Consensus 73 ~~v~~~~~~~~~~~g~id~lvnnAg~ 98 (262)
T 3pk0_A 73 AQCDALAGRAVEEFGGIDVVCANAGV 98 (262)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 45666666666555555788876554
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.14 Score=49.39 Aligned_cols=83 Identities=17% Similarity=0.260 Sum_probs=53.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
+|-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++... .. .++.++. +.+..
T Consensus 24 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~----------------~~---~~~~~~~~Dv~~~~ 84 (277)
T 2rhc_B 24 VALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE----------------AG---VEADGRTCDVRSVP 84 (277)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----------------TT---CCEEEEECCTTCHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----------------cC---CceEEEECCCCCHH
Confidence 355555 59999999999999999999999998876655432110 00 2222222 23334
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++.+...+.+=+++|++...
T Consensus 85 ~v~~~~~~~~~~~g~iD~lv~~Ag~ 109 (277)
T 2rhc_B 85 EIEALVAAVVERYGPVDVLVNNAGR 109 (277)
T ss_dssp HHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 5666666666655555788876653
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.38 E-value=0.075 Score=48.41 Aligned_cols=41 Identities=12% Similarity=0.015 Sum_probs=35.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
.+|-|+| .|.+|..+++.+...|.+|.+.++++++.+.+.+
T Consensus 40 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~ 81 (198)
T 1pqw_A 40 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR 81 (198)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT
T ss_pred CEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 4688999 6999999999999999999999999887765543
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.14 Score=49.61 Aligned_cols=85 Identities=19% Similarity=0.284 Sum_probs=55.1
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCC-cEEEEEcCCCc
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRP-RSVIILVKAGS 84 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~a-dvIil~vp~~~ 84 (505)
|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.+++.++.. +.-.. . ..+..=+.+.+
T Consensus 34 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--------------~~~~~---~~~~~~~Dv~d~~ 96 (281)
T 4dry_A 34 RIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIG--------------GRTGN---IVRAVVCDVGDPD 96 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------HHHSS---CEEEEECCTTCHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--------------hcCCC---eEEEEEcCCCCHH
Confidence 45555 5 6899999999999999999999999988776654321 10010 1 11222233444
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++++++.+.....+=+++|++...
T Consensus 97 ~v~~~~~~~~~~~g~iD~lvnnAG~ 121 (281)
T 4dry_A 97 QVAALFAAVRAEFARLDLLVNNAGS 121 (281)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5667777776655555788887654
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.36 E-value=0.12 Score=49.00 Aligned_cols=83 Identities=13% Similarity=0.233 Sum_probs=54.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... .. .++.++. +.+..
T Consensus 4 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~~~D~~~~~ 64 (256)
T 1geg_A 4 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQ----------------AG---GHAVAVKVDVSDRD 64 (256)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----------------TT---CCEEEEECCTTSHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----------------cC---CcEEEEEecCCCHH
Confidence 455666 58999999999999999999999998877665432110 00 2232222 23334
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++.+...+.+=+++|++...
T Consensus 65 ~v~~~~~~~~~~~g~id~lv~nAg~ 89 (256)
T 1geg_A 65 QVFAAVEQARKTLGGFDVIVNNAGV 89 (256)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 5666666666655555788876643
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.1 Score=52.62 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=59.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHH-HhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL-DRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~-~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|+|+|.+|...++.+...|.+|.+.++++++.+.+. +.+.. .+.-..+.+.+.+.....|+||-++.....
T Consensus 189 ~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~----~v~~~~~~~~~~~~~~~~D~vid~~g~~~~ 264 (366)
T 1yqd_A 189 KHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGAD----SFLVSRDQEQMQAAAGTLDGIIDTVSAVHP 264 (366)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCS----EEEETTCHHHHHHTTTCEEEEEECCSSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCc----eEEeccCHHHHHHhhCCCCEEEECCCcHHH
Confidence 4699999999999999999999999999999999887766 33321 111122332232222346888888765433
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (505)
++..+ +.+.++-.++..+.
T Consensus 265 ~~~~~----~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 265 LLPLF----GLLKSHGKLILVGA 283 (366)
T ss_dssp SHHHH----HHEEEEEEEEECCC
T ss_pred HHHHH----HHHhcCCEEEEEcc
Confidence 34333 33344445555543
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.029 Score=57.31 Aligned_cols=82 Identities=11% Similarity=0.101 Sum_probs=60.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC---cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
..||-|||. |+.|.+-+..+...|. .|.++|+++.+ .+. + .+++. . +|+||-++.
T Consensus 214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~------~g~-----~------~~~i~-~---aDivIn~vl 272 (394)
T 2qrj_A 214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETS------RGG-----P------FDEIP-Q---ADIFINCIY 272 (394)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHT------TCS-----C------CTHHH-H---SSEEEECCC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccc------cCC-----c------hhhHh-h---CCEEEECcC
Confidence 357999999 9999999999999998 99999988632 121 1 13444 3 899999998
Q ss_pred CCchHHHHH-HHHHhcC-CCCcEEEecCC
Q 010637 82 AGSPVDQTI-AALSEHM-SPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~~v~~vl-~~l~~~l-~~g~iIId~st 108 (505)
-+.....++ ++.+..+ ++|.+|||.+.
T Consensus 273 ig~~aP~Lvt~e~v~~m~k~gsVIVDVA~ 301 (394)
T 2qrj_A 273 LSKPIAPFTNMEKLNNPNRRLRTVVDVSA 301 (394)
T ss_dssp CCSSCCCSCCHHHHCCTTCCCCEEEETTC
T ss_pred cCCCCCcccCHHHHhcCcCCCeEEEEEec
Confidence 643322233 5566678 89999999875
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.038 Score=56.87 Aligned_cols=39 Identities=23% Similarity=0.437 Sum_probs=33.5
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT 39 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~ 39 (505)
|.+....+|.|||.|..|.+.|..|+++|+ +|.++++++
T Consensus 1 M~~~~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~ 40 (438)
T 3dje_A 1 MAVTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP 40 (438)
T ss_dssp -CCCTTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 544444579999999999999999999999 999999875
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.13 Score=49.30 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=52.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++. . .. ...+..=+.+.+.
T Consensus 7 k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------~---------~~---~~~~~~D~~~~~~ 66 (263)
T 2a4k_A 7 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL--------E---------AE---AIAVVADVSDPKA 66 (263)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC--------C---------SS---EEEEECCTTSHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------c---------Cc---eEEEEcCCCCHHH
Confidence 3465666 589999999999999999999999998776655421 0 00 1112222233345
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (505)
++.+++++...+.+=|++|++..
T Consensus 67 v~~~~~~~~~~~g~iD~lvnnAg 89 (263)
T 2a4k_A 67 VEAVFAEALEEFGRLHGVAHFAG 89 (263)
T ss_dssp HHHHHHHHHHHHSCCCEEEEGGG
T ss_pred HHHHHHHHHHHcCCCcEEEECCC
Confidence 66666666555545577777654
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.29 E-value=0.09 Score=53.10 Aligned_cols=125 Identities=9% Similarity=0.070 Sum_probs=67.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
..+|.|||+|..|..+|.+|+..|. +++++|.+.-....+..+... ....+-.-+....+.+..+ .+++-+..++..
T Consensus 118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~~~~~~ 196 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKR-NSEISVSEIALN 196 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEEECC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHH-CCCCeEEEeecc
Confidence 3579999999999999999999997 789999875322222211000 0000000011122222211 155555555432
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
-.-+. .+.. +..-++|||++-........+.+.+...++-++.+.+.|
T Consensus 197 i~~~~---~~~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~~~~g 244 (353)
T 3h5n_A 197 INDYT---DLHK-VPEADIWVVSADHPFNLINWVNKYCVRANQPYINAGYVN 244 (353)
T ss_dssp CCSGG---GGGG-SCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEEEEET
T ss_pred cCchh---hhhH-hccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 11011 1223 567789999875443233445566777788888765543
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.054 Score=57.80 Aligned_cols=125 Identities=7% Similarity=0.047 Sum_probs=72.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhccc-CCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|.|||+|..|..++.+|+..|. +++++|.+.=....+..+.... ...+-.-+....+.+..+. +++-+.+++..
T Consensus 33 ~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lN-p~v~v~~~~~~- 110 (531)
T 1tt5_A 33 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELN-SDVSGSFVEES- 110 (531)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTC-TTSBCCEESSC-
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhC-CCCeEEEeCCC-
Confidence 579999999999999999999997 7899998764444444321100 0000001112222333221 45555555542
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
+...++.....+..=++||+++- .+..-..+.+.+...++-++.+.+.|
T Consensus 111 -~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~ln~~c~~~~iplI~~~~~G 159 (531)
T 1tt5_A 111 -PENLLDNDPSFFCRFTVVVATQL-PESTSLRLADVLWNSQIPLLICRTYG 159 (531)
T ss_dssp -HHHHHHSCGGGGGGCSEEEEESC-CHHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred -cchhhhhhHHHhcCCCEEEEeCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 44433323334555689998854 34444445567777788888775544
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.039 Score=55.25 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=31.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
++.+|.|||.|.+|.+.|..|+++|++|.++++..
T Consensus 5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 34589999999999999999999999999999864
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.17 Score=48.79 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=51.8
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeC-------------ChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCc
Q 010637 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNR-------------TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 9 IgIIG-lG~MG~~lA~~La~~G~~V~v~dr-------------~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~ad 74 (505)
+-|.| .|-+|..+|+.|++.|++|.+.+| ++++.+++.+..... ..+
T Consensus 18 ~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~ 78 (280)
T 3pgx_A 18 AFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ-------------------GRK 78 (280)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT-------------------TCC
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc-------------------CCe
Confidence 44445 589999999999999999999998 455554443321100 123
Q ss_pred EEEE--EcCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 75 SVII--LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 75 vIil--~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+.++ =+.+...++++++++...+.+=+++|++...
T Consensus 79 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~ 115 (280)
T 3pgx_A 79 ALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGV 115 (280)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3333 2344455677777666655555788877654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.42 Score=43.78 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=74.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCC-Ceee-eCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL-PLTG-HYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~-~i~~-~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|--||+|. | .++..|++.+.+|+++|.+++.++.+.+.....|.. ++.. ..+..+....+...|+|++....
T Consensus 57 ~~vLDlGcG~-G-~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~-- 132 (204)
T 3njr_A 57 ELLWDIGGGS-G-SVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG-- 132 (204)
T ss_dssp CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC--
T ss_pred CEEEEecCCC-C-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc--
Confidence 4688899986 4 355666666899999999999887666543211100 2332 34554544444458999876532
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
..+ +++.+...|++|-.++-. +..+....+..+.+.+.|......
T Consensus 133 ~~~-~l~~~~~~LkpgG~lv~~-~~~~~~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 133 SQA-LYDRLWEWLAPGTRIVAN-AVTLESETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp CHH-HHHHHHHHSCTTCEEEEE-ECSHHHHHHHHHHHHHHCSEEEEE
T ss_pred cHH-HHHHHHHhcCCCcEEEEE-ecCcccHHHHHHHHHhCCCcEEEE
Confidence 345 788888888876554432 233456666777777777655443
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.13 Score=50.45 Aligned_cols=83 Identities=8% Similarity=0.102 Sum_probs=55.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~~ 84 (505)
.|-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++. +.+..
T Consensus 33 ~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dv~d~~ 93 (301)
T 3tjr_A 33 AAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ----------------G---FDAHGVVCDVRHLD 93 (301)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CceEEEEccCCCHH
Confidence 355666 489999999999999999999999998877765432110 1 2333332 33444
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++++++.+.....+=+++|++...
T Consensus 94 ~v~~~~~~~~~~~g~id~lvnnAg~ 118 (301)
T 3tjr_A 94 EMVRLADEAFRLLGGVDVVFSNAGI 118 (301)
T ss_dssp HHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCc
Confidence 5666666666555455788877654
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.12 Score=48.99 Aligned_cols=40 Identities=18% Similarity=0.343 Sum_probs=32.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC-ChHHHHHHHH
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNR-TTSKVDETLD 47 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr-~~~~~~~l~~ 47 (505)
+|-|.| .|.+|..++..|++.|++|.+.+| ++++.+++.+
T Consensus 9 ~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~ 50 (261)
T 1gee_A 9 VVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLE 50 (261)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence 455555 699999999999999999999999 7776655443
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.2 Score=48.27 Aligned_cols=91 Identities=11% Similarity=0.144 Sum_probs=57.9
Q ss_pred CCcCCCCcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 1 MEASALSRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 1 m~~~~~~~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|.+...-|+.+| |.+-+|..+|+.|++.|.+|.+.+|+.+..+.+.+. .+.-.++..+-.
T Consensus 1 M~~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~------------------~~~~~~~~~~~~ 62 (258)
T 4gkb_A 1 MDLNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDAL------------------AQRQPRATYLPV 62 (258)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHH------------------HHHCTTCEEEEC
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHH------------------HhcCCCEEEEEe
Confidence 555545578888 568899999999999999999999987653322111 010001222222
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
=+.+...++++++++...+.+=|++|+....
T Consensus 63 Dv~~~~~v~~~v~~~~~~~G~iDiLVNnAGi 93 (258)
T 4gkb_A 63 ELQDDAQCRDAVAQTIATFGRLDGLVNNAGV 93 (258)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ecCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 2344456777777776666566788876543
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.2 Score=51.18 Aligned_cols=44 Identities=7% Similarity=0.083 Sum_probs=37.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~ 50 (505)
.+|.|+|+|.+|...++.+...|. +|.+.++++++.+.+.+.+.
T Consensus 215 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa 259 (404)
T 3ip1_A 215 DNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGA 259 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 369999999999998888888999 89999999999887766553
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.18 Score=49.97 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=31.4
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
+++|-|.| .|.+|..++..|+++|++|.+.+|++.
T Consensus 25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 60 (351)
T 3ruf_A 25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST 60 (351)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46899998 599999999999999999999999654
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.13 Score=48.68 Aligned_cols=80 Identities=13% Similarity=0.155 Sum_probs=53.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--EcCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~~ 84 (505)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .++.++ =+.+..
T Consensus 8 ~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dv~~~~ 65 (247)
T 3rwb_A 8 TALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIG----------------------KKARAIAADISDPG 65 (247)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC----------------------TTEEECCCCTTCHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC----------------------CceEEEEcCCCCHH
Confidence 455556 5899999999999999999999999988776654321 111111 122334
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++.+++.+.....+=+++|++...
T Consensus 66 ~v~~~~~~~~~~~g~id~lv~nAg~ 90 (247)
T 3rwb_A 66 SVKALFAEIQALTGGIDILVNNASI 90 (247)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCC
Confidence 5666666666555455777776554
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.17 Score=48.44 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=56.4
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE--EcCCC
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAG 83 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil--~vp~~ 83 (505)
|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.+++.++.. +.. . .++.++ =+.+.
T Consensus 21 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~--------------~~~-~---~~~~~~~~Dv~~~ 82 (266)
T 4egf_A 21 KRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALG--------------EQF-G---TDVHTVAIDLAEP 82 (266)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------HHH-C---CCEEEEECCTTST
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------Hhc-C---CcEEEEEecCCCH
Confidence 45555 5 6899999999999999999999999988776654321 000 1 233332 23455
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..++.+++.+.....+=+++|++...
T Consensus 83 ~~v~~~~~~~~~~~g~id~lv~nAg~ 108 (266)
T 4egf_A 83 DAPAELARRAAEAFGGLDVLVNNAGI 108 (266)
T ss_dssp THHHHHHHHHHHHHTSCSEEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 56777777776665555788876554
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.14 Score=49.35 Aligned_cols=40 Identities=13% Similarity=0.200 Sum_probs=33.7
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh
Q 010637 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (505)
Q Consensus 9 IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~ 48 (505)
+-|.| .|-+|..+|+.|++.|++|.+.+|+.++.+++.+.
T Consensus 33 vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~ 73 (281)
T 3ppi_A 33 AIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADE 73 (281)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH
Confidence 44555 58999999999999999999999999887776553
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.16 Score=48.78 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=54.2
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCC
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
|+.+| | .|-+|..+|+.|++.|++|.+.+|+.++.+++.+... .++.++. +.+.
T Consensus 28 k~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dv~d~ 85 (266)
T 3grp_A 28 RKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLG----------------------KDVFVFSANLSDR 85 (266)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC----------------------SSEEEEECCTTSH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC----------------------CceEEEEeecCCH
Confidence 44455 5 6899999999999999999999999988776654311 1222222 2333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
..++.+++.+.....+=+++|++....
T Consensus 86 ~~v~~~~~~~~~~~g~iD~lvnnAg~~ 112 (266)
T 3grp_A 86 KSIKQLAEVAEREMEGIDILVNNAGIT 112 (266)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 456666666665555557888776543
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.18 Score=50.25 Aligned_cols=41 Identities=24% Similarity=0.300 Sum_probs=35.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhC-CC-cEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEK-GF-PISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~-G~-~V~v~dr~~~~~~~l~~ 47 (505)
++|-|.| .|.+|..++..|++. |+ +|.+++|++.+.+.+.+
T Consensus 22 k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~ 65 (344)
T 2gn4_A 22 QTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAM 65 (344)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHH
Confidence 5798998 599999999999999 97 99999999887766544
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.15 Score=49.44 Aligned_cols=83 Identities=17% Similarity=0.300 Sum_probs=53.0
Q ss_pred cEEE-Ec-ccHHHHHHHHHHHhCCCcEEEEeC-ChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCC
Q 010637 8 RIGL-AG-LAVMGQNLALNVAEKGFPISVYNR-TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 8 ~IgI-IG-lG~MG~~lA~~La~~G~~V~v~dr-~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
|+.+ .| .|-+|..+|+.|++.|++|.+.+| ++++.+++.++.... . .++.++. +.+
T Consensus 30 k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~d 90 (280)
T 4da9_A 30 PVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGL----------------G---ARVIFLRADLAD 90 (280)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTS
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc----------------C---CcEEEEEecCCC
Confidence 4444 45 589999999999999999999985 766665554432110 1 2333332 344
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
...++++++.+...+.+=+++|++...
T Consensus 91 ~~~v~~~~~~~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 91 LSSHQATVDAVVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp GGGHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 456777777776655555778876654
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=94.15 E-value=0.068 Score=55.10 Aligned_cols=175 Identities=11% Similarity=0.079 Sum_probs=101.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcE-EEEeCC----------hHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPI-SVYNRT----------TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V-~v~dr~----------~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~adv 75 (505)
++|.|.|.|++|...|+.|.+.|.+| .+.|.+ .+.+.++.++...-.++..+ .-+.+++... .||+
T Consensus 222 ~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~-~~~~~~i~~~--~~DI 298 (424)
T 3k92_A 222 ARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTD-VITNEELLEK--DCDI 298 (424)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSC-CBCHHHHHHS--CCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcE-EecCccceec--cccE
Confidence 57999999999999999999999996 577877 55555544332100000011 1245665543 4899
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC--CCCCHHHhhcCCccccCCCHH
Q 010637 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG--VSGGEEGARHGPSLMPGGSFE 153 (505)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p--vsGg~~~a~~G~~im~gg~~e 153 (505)
++-|-..+....+ -.+.+ +-++|+...|... |.+..+.+.++|+.|+.-- -.||.. -.
T Consensus 299 liPcA~~n~I~~~----~a~~l-~ak~V~EgAN~p~--t~eA~~iL~~rGI~~~PD~~aNAGGV~-------------vS 358 (424)
T 3k92_A 299 LVPAAISNQITAK----NAHNI-QASIVVERANGPT--TIDATKILNERGVLLVPDILASAGGVT-------------VS 358 (424)
T ss_dssp EEECSCSSCBCTT----TGGGC-CCSEEECCSSSCB--CHHHHHHHHHTTCEEECHHHHTTHHHH-------------HH
T ss_pred EeecCcccccChh----hHhhc-CceEEEcCCCCCC--CHHHHHHHHHCCCEEECchHhcCCCEE-------------ee
Confidence 8877665422222 22334 5688998888863 4667788899999887421 122221 11
Q ss_pred HHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHH
Q 010637 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 154 a~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~ 224 (505)
.++.+ +... ...+- ..-|+..++..+...+.+.+..+++.+ ++..+...++
T Consensus 359 ~~E~~----qn~~-------~~~w~--------~eeV~~~l~~~m~~~~~~v~~~a~~~~-~~~~~aA~~~ 409 (424)
T 3k92_A 359 YFEWV----QNNQ-------GYYWS--------EEEVAEKLRSVMVSSFETIYQTAATHK-VDMRLAAYMT 409 (424)
T ss_dssp HHHHH----HHHH-------TCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHHH
T ss_pred hhHHH----hccc-------ccCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHhC-cCHHHHHHHH
Confidence 22222 2222 11111 123445555556666677777777777 7766655543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 505 | ||||
| d2pgda1 | 297 | a.100.1.1 (A:177-473) 6-phosphogluconate dehydroge | 1e-132 | |
| d1pgja1 | 300 | a.100.1.1 (A:179-478) 6-phosphogluconate dehydroge | 1e-121 | |
| d2pgda2 | 176 | c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase | 1e-32 | |
| d1pgja2 | 178 | c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase | 4e-31 | |
| d3cuma2 | 162 | c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase | 2e-22 | |
| d1vpda2 | 161 | c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase | 2e-21 | |
| d2cvza2 | 156 | c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase | 3e-13 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 3e-09 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 1e-05 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 4e-05 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 0.002 |
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 297 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 383 bits (986), Expect = e-132
Identities = 158/300 (52%), Positives = 202/300 (67%), Gaps = 8/300 (2%)
Query: 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241
G+G+FVKMVHNGIEYGDMQLI EAY ++K V GL + E+A+ F+EWNK EL+SFL+EITA
Sbjct: 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITA 60
Query: 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEE 301
I K +D G+ L+ KI D G KGTGKWT A E V I ++ R LS LK+E
Sbjct: 61 SILKFQDADGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDE 119
Query: 302 REKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKG 361
R +A+K QN+ DKK ++D+R+ALYASKI SYAQG LLR + E G
Sbjct: 120 RIQASK------KLKGPQNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFG 173
Query: 362 WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVV 421
W LN+G +A +W+GGCIIR+VFL +IK A+ RNP L +L++D F + Q +WRR +
Sbjct: 174 WTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAI 233
Query: 422 GLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSF-HTEWT 480
+ AGI P +LS++D YR A LPANL+QAQRD FGAHTYE + +PG F HT WT
Sbjct: 234 STGVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWT 293
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Score = 355 bits (912), Expect = e-121
Identities = 89/304 (29%), Positives = 155/304 (50%), Gaps = 8/304 (2%)
Query: 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEW-NKGELESFLVEIT 240
G+G+ VKM HN EY +Q+ E +D+L+ +G L+N E+A + ++W +K L+S++++I+
Sbjct: 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDIS 59
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+ KD+ G L + ++D+ G KGTG W+ Q+A E+ V AP++ ++ R + K
Sbjct: 60 IAAARAKDKDG-SYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKT 118
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ER+ A + + I + ++ + I YAQ LR
Sbjct: 119 ERQANASNAPGI-TQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVH 177
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
+ LN ++ GCI++ L + +A+++NPN+++ + F E+ +R +
Sbjct: 178 NFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISN--LMCAFQTEIRAGLQNYRDM 235
Query: 421 VGL-AISAGISTPGMCASLSYFDTYRRARLP-ANLVQAQRDLFGAHTYERIDRPGSFHTE 478
V L +S P + ASL+Y L LV QRD+FG H YER+D+ G +
Sbjct: 236 VALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQ 295
Query: 479 WTKL 482
W +L
Sbjct: 296 WPEL 299
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 120 bits (301), Expect = 1e-32
Identities = 84/177 (47%), Positives = 117/177 (66%), Gaps = 3/177 (1%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A + I L GLAVMGQNL LN+ + GF + +NRT SKVD+ L A+ + G ++
Sbjct: 1 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVLGAHSLE 58
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
+ V +++PR +I+LVKAG VD I L + GD IIDGGN Y +T RR + K
Sbjct: 59 EMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDK 118
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGE 180
G+L++G GVSGGE+GAR+GPSLMPGG+ EA+ +I+ I Q +AA+V G PC ++G+
Sbjct: 119 GILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGD 175
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Score = 116 bits (291), Expect = 4e-31
Identities = 79/176 (44%), Positives = 107/176 (60%), Gaps = 2/176 (1%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTGHYTPRDF 66
+G+ GL VMG NLALN+AEKGF ++V+NRT SK +E + A L T F
Sbjct: 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAF 62
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
S+++PR +ILV+AG+ D TI L + GD ++D GN + + RR + GL
Sbjct: 63 AASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGL 122
Query: 127 LYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEG 181
+LGMG+SGGEEGAR GP+ PGG+ + IR I++ AA+ DDG PCVT G G
Sbjct: 123 RFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG 178
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 91.5 bits (226), Expect = 2e-22
Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 8/164 (4%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+I GL MG +A N+ + G+ ++V++ S VD + + RD
Sbjct: 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASA-------ARSARDA 54
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
V S++ + + L H++PG +++ + + A ++GL
Sbjct: 55 VQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGL 114
Query: 127 LYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQV 169
L VSGG GA G + M GG EA R + + + +
Sbjct: 115 AMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNI 158
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 88.7 bits (219), Expect = 2e-21
Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 14/166 (8%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL +MG+ ++ N+ + G+ + V +R + G T
Sbjct: 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN----------PEAIADVIAAGAETASTAK 51
Query: 68 LSIQRPRSVIILVKAGSPVDQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
++ +I ++ V + + E PG +ID + L + K
Sbjct: 52 AIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAK 111
Query: 125 GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQV 169
G+ L VSGGE A G S+M GG ++ D+++ +A V
Sbjct: 112 GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV 157
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 65.3 bits (158), Expect = 3e-13
Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 13/167 (7%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++ GL MG +A ++A + FP V+NRT K + G + V
Sbjct: 2 KVAFIGLGAMGYPMAGHLA-RRFPTLVWNRTFEKALRHQEEF---GSEAVPLERVAEARV 57
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
+ P + + + AL ++ G +D + + R +KG+
Sbjct: 58 IFTCLPTTREV--------YEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVT 109
Query: 128 YLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGP 173
YL VSGG GA G ++M GG EA +R L V GP
Sbjct: 110 YLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLAYAKKVVHVGP 156
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 53.7 bits (128), Expect = 3e-09
Identities = 21/173 (12%), Positives = 43/173 (24%), Gaps = 24/173 (13%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
R+G G + Q LA + +G + S R + Y+ +
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
++ ++ +AG +D N T R +
Sbjct: 62 SAVTPGVALGAARRAG-------------RHVRGIYVDINNISP-ETVRMASSL-IEKGG 106
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
++ + G ++ G L + G + G
Sbjct: 107 FVDAAIMGSVRRKGADIRIIASGRDAEE---FMKLNRY------GLNIEVRGR 150
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 43.6 bits (101), Expect = 1e-05
Identities = 19/170 (11%), Positives = 53/170 (31%), Gaps = 17/170 (10%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG+ GL ++G +LA ++ +G + +R S ++ ++R +
Sbjct: 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQL---------VDEAGQDL 52
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
+Q + + + + + + + + G
Sbjct: 53 SLLQTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGH 112
Query: 128 YLGMGVSGGEEGARHGP--------SLMPGGSFEAYNNIRDILQKVAAQV 169
+ + G +GA + E +R +L+ + ++
Sbjct: 113 PMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKI 162
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 41.5 bits (96), Expect = 4e-05
Identities = 11/162 (6%), Positives = 38/162 (23%), Gaps = 18/162 (11%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
+ G + + + ++ + +R+ + + Y + L
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAE------------VYGGKAATL 49
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
+ ++ V +T+A G + +
Sbjct: 50 EKHPELNGVVFVIVPDRYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIH-----P 104
Query: 129 LGMGVSGGEEGARH-GPSLMPGGSFEAYNNIRDILQKVAAQV 169
S + G ++ I ++++ +
Sbjct: 105 NFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKY 146
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 37.2 bits (85), Expect = 0.002
Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 9/145 (6%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-----REGQLPLTGHYT 62
+ GL G A +A KG + ++ ++ E DR
Sbjct: 3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLL 62
Query: 63 PRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIID--GGNEWYLNTERRIHE 120
D L+++ ++I+V A A ++ ++S G II G L + + E
Sbjct: 63 TSDIGLAVKDADVILIVVPAIH-HASIAANIASYISEGQLIILNPGATGGALEFRKILRE 121
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPS 145
+ +G S P
Sbjct: 122 NGAPEVT-IGETSSMLFTCRSERPG 145
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 505 | |||
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 100.0 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 100.0 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.97 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.97 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.97 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.96 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.94 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 99.85 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 99.85 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.85 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.82 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.74 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.73 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.69 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.61 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.54 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.53 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.51 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.49 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.44 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.4 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.39 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.39 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.39 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.37 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.36 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 99.13 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.12 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.85 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.8 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.79 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.74 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.72 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.69 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.65 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.63 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.63 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.6 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.55 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.52 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.51 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.35 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.32 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.31 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.27 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.13 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.1 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.09 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.09 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.05 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.04 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 98.02 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.99 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.97 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.95 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.92 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.9 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.85 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.83 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.81 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.76 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.76 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.69 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.65 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.65 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.62 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.6 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.59 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.56 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 97.56 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.55 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 97.54 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.5 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.47 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.45 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.44 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.38 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.37 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.26 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 97.23 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.23 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.18 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.18 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.13 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.13 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.11 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 97.11 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.1 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.09 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.09 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.0 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 96.92 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.9 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.9 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 96.87 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 96.86 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.84 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.83 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.82 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 96.81 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.81 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.77 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 96.75 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 96.75 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.73 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.71 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.71 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.68 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 96.68 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.62 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.56 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.46 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.38 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.37 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 96.31 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.25 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 96.09 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 96.09 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.08 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.07 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 96.07 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.06 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.05 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.03 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.95 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 95.9 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 95.89 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 95.87 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 95.85 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 95.84 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.84 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 95.77 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 95.77 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 95.76 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 95.67 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 95.66 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.64 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 95.61 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.6 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.6 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.6 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 95.59 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 95.58 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 95.56 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 95.56 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.53 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.53 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 95.53 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 95.51 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 95.44 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.42 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 95.38 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.37 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 95.36 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 95.36 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 95.34 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.33 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.27 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 95.25 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 95.14 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 95.12 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 95.1 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.06 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 95.03 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.02 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.02 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.98 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 94.95 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 94.94 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 94.9 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 94.88 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 94.88 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 94.87 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.86 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 94.84 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.82 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 94.81 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 94.8 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 94.73 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.69 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.68 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 94.68 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 94.67 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 94.67 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.62 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 94.61 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 94.6 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 94.59 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 94.54 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 94.54 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 94.41 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 94.41 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.36 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 94.34 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 94.3 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 94.24 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.23 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 94.2 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 94.15 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.15 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 94.12 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.11 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 94.11 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.07 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 94.01 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 94.01 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 94.0 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 93.97 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 93.91 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.75 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 93.66 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 93.65 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 93.64 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 93.63 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 93.63 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 93.57 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 93.52 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 93.48 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.47 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 93.43 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 93.42 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 93.37 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.36 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 93.27 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 93.26 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 93.19 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 93.17 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 93.09 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 93.09 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 93.02 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.0 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 92.94 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 92.89 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 92.87 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 92.82 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 92.73 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 92.64 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 92.53 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 92.52 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.29 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 92.27 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.27 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 92.06 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 92.06 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 91.92 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 91.89 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 91.61 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 91.45 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 91.42 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 91.3 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.24 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 91.11 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 91.03 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 90.94 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 90.89 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 90.78 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 90.68 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 90.58 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 90.51 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 90.48 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 90.32 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 90.07 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 90.03 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 89.87 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 89.81 | |
| d1n1ea1 | 160 | Glycerol-3-phosphate dehydrogenase {Trypanosome (L | 89.79 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.67 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 89.5 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 89.32 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 89.28 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 89.09 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 88.66 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 88.25 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 88.1 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 87.96 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 87.87 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 87.85 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 87.7 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 87.43 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 87.16 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 87.12 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 87.03 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 87.03 | |
| d1txga1 | 155 | Glycerol-3-phosphate dehydrogenase {Archaeoglobus | 86.53 | |
| d1ycga1 | 149 | Nitric oxide reductase C-terminal domain {Moorella | 86.45 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 86.27 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 86.2 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 85.97 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 85.84 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 85.7 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 85.27 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 85.12 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 85.11 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 85.01 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 84.94 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 84.93 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 84.9 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 84.77 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 84.73 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 84.67 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 84.34 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 84.19 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 84.14 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 83.89 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 83.79 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 82.99 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 82.97 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 82.79 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 82.79 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 82.55 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 82.18 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 82.01 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 81.79 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 81.78 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 81.36 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 80.78 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 80.7 | |
| d1ks9a1 | 124 | Ketopantoate reductase PanE {Escherichia coli [Tax | 80.59 | |
| d5nula_ | 138 | Flavodoxin {Clostridium beijerinckii [TaxId: 1520] | 80.57 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 80.35 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 80.15 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 80.11 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.08 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 80.02 |
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=100.00 E-value=7.6e-84 Score=637.24 Aligned_cols=294 Identities=53% Similarity=0.903 Sum_probs=278.7
Q ss_pred cchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHh
Q 010637 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILD 261 (505)
Q Consensus 182 G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~ 261 (505)
|+|||||||||+|||++||+++|+|.++++..|++++++.++|+.|+.|.++|||++++.++++++++ ...+++|.|.|
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~il~~kd~-~~~~~ld~I~d 79 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDA-DGKHLLPKIRD 79 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCT-TSSBSGGGSCC
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCC-CcCcchhhhhc
Confidence 79999999999999999999999999999865599999999999999999999999999999987664 34579999999
Q ss_pred hhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccccchHHHHHHHHHHHH
Q 010637 262 KTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYAS 341 (505)
Q Consensus 262 ~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~al~~~ 341 (505)
.++|||||+|++++|.++|||+|+|.+||++|++|+.+++|..+++.++++... ....+...|+++||+|++++
T Consensus 80 ~a~~kGTG~Wt~~~Al~lgvp~p~I~~Av~aR~~S~~k~~R~~~~~~~~~~~~~------~~~~~~~~~i~~l~~al~~~ 153 (297)
T d2pgda1 80 SAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNI------PFEGDKKSFLEDIRKALYAS 153 (297)
T ss_dssp CCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC------CCCSCHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHcCCCchHHHHHHhhHhhcccHHHHHHhhhcccCcccC------CCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999776432 23346788999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHHHHHHHHhhhhHHHHHH
Q 010637 342 KICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVV 421 (505)
Q Consensus 342 ~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~r~~v 421 (505)
+|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.+.++|+++|++.|+++++.|.+.+.+..++|||+|
T Consensus 154 ~i~syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~a~~~~~~l~nl~~~~~~~~~l~~~~~~~r~~v 233 (297)
T d2pgda1 154 KIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAI 233 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHHHHHhCCCccchhhcHHHHHHHhhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhccCChhhhHHHHHHhhhcCccccccCCCCcc-ccccCCC
Q 010637 422 GLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSF-HTEWTKL 482 (505)
Q Consensus 422 ~~a~~~gip~p~~saal~y~~~~~~~~~~a~~iqaqRd~FG~H~~~r~d~~~~~-h~~w~~~ 482 (505)
..|++.|||+|++++||+||++++++++|+|+|||||||||+|||+|+|++|.| |++|++.
T Consensus 234 ~~ai~~gip~P~lssaL~y~~~~~~~~lp~~lIQAqRD~FG~H~~~r~d~~G~f~H~~W~~~ 295 (297)
T d2pgda1 234 STGVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGH 295 (297)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHCSSCTHHHHHHHHHHHHCCCBCCSSSTTCCBCCCCSCS
T ss_pred HHHHHcCCChHHHHHHHHHHHHhccCCchhHHHHHHHHHhcCCCeeecCCCCCcccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999975 9999864
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=2.9e-81 Score=620.91 Aligned_cols=295 Identities=29% Similarity=0.545 Sum_probs=266.1
Q ss_pred cchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhcc-CCcchhHHhhhhhhccccccCCCchhHHHHH
Q 010637 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNK-GELESFLVEITADIFKVKDEYGEGELVDKIL 260 (505)
Q Consensus 182 G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~-g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~ 260 (505)
|+|||||||||+|||++||+++|+|.+++..+ ++++++.++|+.|+. +.++|||++++.++++++|+ .+.+++|.|+
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~~-~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~-~g~~l~d~I~ 78 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDK-DGSYLTEHVM 78 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCT-TSSBGGGGBC
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCC-CCchhHHHhc
Confidence 79999999999999999999999999999876 999999999999965 56999999999999987664 4568999999
Q ss_pred hhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccccchHHHHHHHHHHH
Q 010637 261 DKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYA 340 (505)
Q Consensus 261 ~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~al~~ 340 (505)
|.++|||||+|++++|.++|||+|+|.+||++|++|+.|++|..+++.++++....... ..-+.+.++|+++|||||||
T Consensus 79 d~a~~kGTG~Wt~~~al~~gvp~p~i~~Av~aR~~S~~k~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~Al~~ 157 (300)
T d1pgja1 79 DRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGITQSPGYT-LKNKSPSGPEIKQLYDSVCI 157 (300)
T ss_dssp CCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHSTTTTCCCCCC-CSCCSTTSHHHHHHHHHHHH
T ss_pred ccccCCchHHHHHHHHHHcCCCccHHHHHHHHHHHhCChHHHHHHHhhcccccCCcccc-cccchhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998664311000 01123467899999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHHHHHHHHhhhhHHHHH
Q 010637 341 SKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420 (505)
Q Consensus 341 ~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~r~~ 420 (505)
|+|++|+|||+||++++++|+|++|+.+|+++||+||||||.||+.|.++|+++|++.+++. .|...+.+...+||++
T Consensus 158 ~~i~syaQGf~LL~~as~~~~w~ldl~~Ia~iWr~GCIIRS~LL~~i~~a~~~~~~l~~l~~--~f~~~~~~~~~~~~r~ 235 (300)
T d1pgja1 158 AIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMC--AFQTEIRAGLQNYRDM 235 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHHHHHHHCTTCSCTTG--GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCccchHHHHHhcCCceeeHHHHHHHHHHhhcCCccchhhH--HHHHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988775 3666677777777665
Q ss_pred HH-HHHHcCCChHHHHHHHHHHHhhccCChh-hhHHHHHHhhhcCccccccCCCCccccccCC
Q 010637 421 VG-LAISAGISTPGMCASLSYFDTYRRARLP-ANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481 (505)
Q Consensus 421 v~-~a~~~gip~p~~saal~y~~~~~~~~~~-a~~iqaqRd~FG~H~~~r~d~~~~~h~~w~~ 481 (505)
|. .+++.|||+|++++||+||++++++++| +|||||||||||+|||+|+|++|.||++|++
T Consensus 236 v~~~~~~~gip~P~lssaL~y~~~~~~~~l~~anLIQAqRD~FGaH~~~r~d~~g~~H~~W~~ 298 (300)
T d1pgja1 236 VALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQWPE 298 (300)
T ss_dssp HHHHHHHCCCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHHCCCEEBSSSSSEECCCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCCchhHHHHHHHhhcCCCCeeeCCCCCCcCCCCCC
Confidence 54 5788899999999999999999999999 6999999999999999999999999999975
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=1.7e-31 Score=242.13 Aligned_cols=157 Identities=23% Similarity=0.390 Sum_probs=148.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|||||||+|.||.+||++|+++||+|++|||++++.+++.+.+ ...+.+++|+++. +|+||+|||++.++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~-------~~~~~~~~e~~~~---~d~ii~~v~~~~~v 70 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAG-------AETASTAKAIAEQ---CDVIITMLPNSPHV 70 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhh-------hhhcccHHHHHhC---CCeEEEEcCCHHHH
Confidence 6899999999999999999999999999999999999998764 5678999999998 99999999999999
Q ss_pred HHHH---HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHH
Q 010637 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (505)
Q Consensus 87 ~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll 162 (505)
++++ +.+.+.+.+|++|||+||+.|.+++++.+.++++|++|+++|++|++..++.|+ ++|+||+++++++++|+|
T Consensus 71 ~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il 150 (161)
T d1vpda2 71 KEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLM 150 (161)
T ss_dssp HHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHH
Confidence 9998 568888999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhcccCCCCceEEeC
Q 010637 163 QKVAAQVDDGPCVTYIG 179 (505)
Q Consensus 163 ~~iga~~~~~~~v~~vG 179 (505)
+.++ ++++|+|
T Consensus 151 ~~~~------~~i~~~G 161 (161)
T d1vpda2 151 KAMA------GSVVHTG 161 (161)
T ss_dssp HTTE------EEEEEEE
T ss_pred HHhc------CceEECC
Confidence 9999 7899986
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.97 E-value=2.8e-31 Score=244.23 Aligned_cols=173 Identities=47% Similarity=0.808 Sum_probs=159.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|||||+|.||.+||++|+++||+|++|||++++++++.+.+.... ....+.+.+++++.+..+|.+++++|++.++
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v 80 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGT--KVLGAHSLEEMVSKLKKPRRIILLVKAGQAV 80 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTS--SCEECSSHHHHHHHBCSSCEEEECSCTTHHH
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccc--cccchhhhhhhhhhhcccceEEEecCchHHH
Confidence 57999999999999999999999999999999999999988754321 3456778888888777899999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHHh
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~ig 166 (505)
.++++++.+.+.+|++|||+||..|.+++++.+.+.++|++|+++|++|++..|+.|.++|+||+++++++++|+|+.++
T Consensus 81 ~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~~~~~gG~~~~~~~~~~il~~~~ 160 (176)
T d2pgda2 81 DNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIA 160 (176)
T ss_dssp HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHHS
T ss_pred HHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCcEEEcCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-CCCCceEEeCCC
Q 010637 167 AQV-DDGPCVTYIGEG 181 (505)
Q Consensus 167 a~~-~~~~~v~~vG~~ 181 (505)
.++ .+++|+.|+||.
T Consensus 161 ~kv~~g~~c~~~~G~~ 176 (176)
T d2pgda2 161 AKVGTGEPCCDWVGDD 176 (176)
T ss_dssp CBCTTSCBSCCCCEET
T ss_pred cccCCCCcCceeeCCC
Confidence 987 577899999873
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=2e-30 Score=235.33 Aligned_cols=158 Identities=26% Similarity=0.423 Sum_probs=147.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+||||||+|.||.+||++|+++||+|.+|||++++.+.+...+ .....++.+++.. +|+|++|||++.+
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~-------~~~~~~~~e~~~~---~diii~~v~~~~~ 70 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAG-------ASAARSARDAVQG---ADVVISMLPASQH 70 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT-------CEECSSHHHHHTS---CSEEEECCSCHHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhh-------ccccchhhhhccc---cCeeeecccchhh
Confidence 46899999999999999999999999999999999999888764 4677899999887 9999999999988
Q ss_pred HHHHHH---HHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHH
Q 010637 86 VDQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl~---~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~l 161 (505)
++.++. ++.+.+.+|++|||+||+.|..+.++.+.++++|++|+++||+||+++|+.|+ ++|+||+++++++++++
T Consensus 71 ~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~i 150 (162)
T d3cuma2 71 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPL 150 (162)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecCCHHHHHHHHHH
Confidence 888874 47788999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhcccCCCCceEEeC
Q 010637 162 LQKVAAQVDDGPCVTYIG 179 (505)
Q Consensus 162 l~~iga~~~~~~~v~~vG 179 (505)
|+.++ +.++|+|
T Consensus 151 l~~~~------~~v~~~G 162 (162)
T d3cuma2 151 FEAMG------RNIFHAG 162 (162)
T ss_dssp HHHHE------EEEEEEE
T ss_pred HHHHc------CccEECc
Confidence 99999 7899986
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.96 E-value=1.1e-28 Score=226.95 Aligned_cols=176 Identities=42% Similarity=0.724 Sum_probs=155.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCC-CCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ-LPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~-~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|||||||+|.||.+||++|+++||+|.+|||++++.+++.+.+..... .++....+.++++..+..++.+++++++...
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 589999999999999999999999999999999999999887643210 0356677888888888889999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHH
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~i 165 (505)
++.++..+.+.+.++++++|+||..+.++.++.+.+.+++++|+++||+|++.+|+.|+++|+||+++++++++|+|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~~~mvgG~~~~~~~v~pil~~~ 161 (178)
T d1pgja2 82 TDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAA 161 (178)
T ss_dssp HHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEECHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCcEEEeeCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCceEEeCCCcch
Q 010637 166 AAQVDDGPCVTYIGEGGSG 184 (505)
Q Consensus 166 ga~~~~~~~v~~vG~~G~g 184 (505)
+.++.. .-.|+|+.|+|
T Consensus 162 ~~~~~~--~~~~~g~~G~G 178 (178)
T d1pgja2 162 AAKADD--GRPCVTMNGSG 178 (178)
T ss_dssp SCBCTT--SCBSCCCCCST
T ss_pred hccccC--CCCccCCCCCC
Confidence 954311 11288888876
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=4.1e-27 Score=211.91 Aligned_cols=154 Identities=26% Similarity=0.338 Sum_probs=137.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHH
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~ 87 (505)
||||||+|.||.+||+||.++||.| +|||++++..++.+.+. ......+. +.. +|++|+++|.+.++.
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~---~~~~i~~~~~~~~v~ 69 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFG-------SEAVPLER-VAE---ARVIFTCLPTTREVY 69 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHC-------CEECCGGG-GGG---CSEEEECCSSHHHHH
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcC-------Cccccccc-ccc---eeEEEecccchhhhh
Confidence 7999999999999999999999865 78999998888777653 22334433 344 899999999999999
Q ss_pred HHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHHHHHh
Q 010637 88 QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVA 166 (505)
Q Consensus 88 ~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll~~ig 166 (505)
.+.+.+.+.+.++.++||+||..|..++++.+.++++|++|+++||+||+.+|..|+ ++|+||+++++++++|+|+ ++
T Consensus 70 ~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L~-~~ 148 (156)
T d2cvza2 70 EVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLA-YA 148 (156)
T ss_dssp HHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGCT-TE
T ss_pred hhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHHHH-hc
Confidence 888999999999999999999999999999999999999999999999999999999 9999999999999999994 88
Q ss_pred cccCCCCceEEeCC
Q 010637 167 AQVDDGPCVTYIGE 180 (505)
Q Consensus 167 a~~~~~~~v~~vG~ 180 (505)
++++|+||
T Consensus 149 ------~~v~~~GP 156 (156)
T d2cvza2 149 ------KKVVHVGP 156 (156)
T ss_dssp ------EEEEEEES
T ss_pred ------CcCEEeCc
Confidence 78999987
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.85 E-value=1e-22 Score=199.31 Aligned_cols=118 Identities=5% Similarity=0.077 Sum_probs=98.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHHH
Q 010637 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (505)
Q Consensus 327 ~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (505)
+||||||||||||||+||+|+|+|++|+.+-..+ +.++.+|++.|+.| .++|+||+++.+++++.++..+.++|.+.
T Consensus 2 sGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~--~~~i~~vf~~w~~~-~l~syLleit~~il~~kd~~~~~~ld~I~ 78 (297)
T d2pgda1 2 AGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLG--HKEMAKAFEEWNKT-ELDSFLIEITASILKFQDADGKHLLPKIR 78 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC--HHHHHHHHHHHTTT-TTCBHHHHHHHHHHHCBCTTSSBSGGGSC
T ss_pred CchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHhCC-CccHHHHHHHHHHHhccCCCcCcchhhhh
Confidence 6899999999999999999999999999653211 13455555569999 89999999999999865544567778888
Q ss_pred HHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCh
Q 010637 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARL 449 (505)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~ 449 (505)
+.+-++++| +|++++|+++|||+|+|++||+ |+++++.+|.
T Consensus 79 d~a~~kGTG--~Wt~~~Al~lgvp~p~I~~Av~aR~~S~~k~~R~ 121 (297)
T d2pgda1 79 DSAGQKGTG--KWTAISALEYGVPVTLIGEAVFARCLSSLKDERI 121 (297)
T ss_dssp CCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHH
T ss_pred ccccCCCch--HHHHHHHHHcCCCchHHHHHHhhHhhcccHHHHH
Confidence 888899999 9999999999999999999999 6776665553
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.85 E-value=1.1e-22 Score=199.68 Aligned_cols=118 Identities=14% Similarity=0.207 Sum_probs=99.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-CHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNL-NFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l-~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~ 404 (505)
++||||||||||||||+||+++|+|++||.. +++. ++.+|++.|+.|.+++|||||++.++++++++....|+|.
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~----~~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~~g~~l~d~ 76 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAM----GLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEH 76 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGG
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHc----CCCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCCCCchhHHH
Confidence 3699999999999999999999999999843 2212 4666667797766999999999999998765545688888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCh
Q 010637 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARL 449 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~--y~~~~~~~~~ 449 (505)
+.+.+-+++|| +|++++|+++|+|+|+|++||+ ++++++..|.
T Consensus 77 I~d~a~~kGTG--~Wt~~~al~~gvp~p~i~~Av~aR~~S~~k~~R~ 121 (300)
T d1pgja1 77 VMDRIGSKGTG--LWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQ 121 (300)
T ss_dssp BCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHH
T ss_pred hcccccCCchH--HHHHHHHHHcCCCccHHHHHHHHHHHhCChHHHH
Confidence 88888899999 9999999999999999999999 6777776653
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.85 E-value=1.6e-21 Score=174.18 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=122.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|||||||+|.||.+||++|+++||+|.+||+++.+...+...+. ....+++|+++. +|+||+|||++ ..
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~e~~~~---~diIi~~v~~~-~~ 69 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTV-------GVTETSEEDVYS---CPVVISAVTPG-VA 69 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH-------TCEECCHHHHHT---SSEEEECSCGG-GH
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcc-------cccccHHHHHhh---cCeEEEEecCc-hH
Confidence 68999999999999999999999999999999887776665543 346688999988 99999999996 55
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHHHHH
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll~~i 165 (505)
.+++..+.+.+ ++++||+||..|..++++.+.+++. .|+++|++|++..+..++ .++.|++.+.+++ |+.+
T Consensus 70 ~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~~~~~~--~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~~----l~~~ 141 (152)
T d1i36a2 70 LGAARRAGRHV--RGIYVDINNISPETVRMASSLIEKG--GFVDAAIMGSVRRKGADIRIIASGRDAEEFMK----LNRY 141 (152)
T ss_dssp HHHHHHHHTTC--CSEEEECSCCCHHHHHHHHHHCSSS--EEEEEEECSCHHHHGGGCEEEEESTTHHHHHG----GGGG
T ss_pred HHHHHhhcccC--CceeeccCcCCHHHHHHHHHHHhcc--CCCcccccCCcccccCCcEEEEECCCHHHHHH----HHHc
Confidence 66777776654 6899999999999999888887654 599999999999998888 5555556554443 6778
Q ss_pred hcccCCCCceEEeCC
Q 010637 166 AAQVDDGPCVTYIGE 180 (505)
Q Consensus 166 ga~~~~~~~v~~vG~ 180 (505)
+ .++.++|+
T Consensus 142 g------~~i~~~G~ 150 (152)
T d1i36a2 142 G------LNIEVRGR 150 (152)
T ss_dssp T------CEEEECSS
T ss_pred C------CeeeEcCC
Confidence 8 78888886
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.82 E-value=4.4e-20 Score=166.65 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=118.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|||||||+|.||.+||++|.++||+|++|||+++.++++.+.+.. -...++. +.++. +|+||+++|.. .+
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~-----~~~~~~~-~~~~~---~DiIilavp~~-~~ 70 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLV-----DEAGQDL-SLLQT---AKIIFLCTPIQ-LI 70 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSC-----SEEESCG-GGGTT---CSEEEECSCHH-HH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhcc-----ceeeeec-ccccc---cccccccCcHh-hh
Confidence 689999999999999999999999999999999998887775431 1233333 44454 99999999985 79
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC-CCeEEeCCCCCCHHHhhc----CC-cc---ccCCCHHHHHH
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK-GLLYLGMGVSGGEEGARH----GP-SL---MPGGSFEAYNN 157 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~-gi~~i~~pvsGg~~~a~~----G~-~i---m~gg~~ea~~~ 157 (505)
+++++++.+.+.++.+|+|+++..........+..... +.|.+..|..+|+..+.. +. .+ +.++++++++.
T Consensus 71 ~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~ 150 (165)
T d2f1ka2 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLAC 150 (165)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHH
T ss_pred hhhhhhhhhhcccccceeeccccchHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHH
Confidence 99999999999999999999988765554443332221 445555666666655432 33 33 34789999999
Q ss_pred HHHHHHHHhcccCCCCceEEe
Q 010637 158 IRDILQKVAAQVDDGPCVTYI 178 (505)
Q Consensus 158 v~~ll~~iga~~~~~~~v~~v 178 (505)
++++|+.+| .++++|
T Consensus 151 v~~l~~~lG------~~v~~c 165 (165)
T d2f1ka2 151 LRSVLEPLG------VKIYLC 165 (165)
T ss_dssp HHHHHGGGT------CEEEEC
T ss_pred HHHHHHHhC------CEEEeC
Confidence 999999999 566654
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=1.2e-19 Score=161.68 Aligned_cols=149 Identities=7% Similarity=-0.037 Sum_probs=112.4
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHH
Q 010637 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQ 88 (505)
Q Consensus 9 IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~ 88 (505)
|||||+|+||.+|+.+|.+.++.+.+|+|++++.+++.+.+.. .+.+++++++. +|+||+|||++ ++.+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~-------~~~~~~~~~~~---~DiVil~v~d~-~i~~ 70 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGG-------KAATLEKHPEL---NGVVFVIVPDR-YIKT 70 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCC-------CCCSSCCCCC------CEEECSCTT-THHH
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccc-------cccchhhhhcc---CcEEEEeccch-hhhH
Confidence 8999999999999999977665567999999999999887642 35577777776 99999999985 6777
Q ss_pred HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHHHHHhc
Q 010637 89 TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAA 167 (505)
Q Consensus 89 vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll~~iga 167 (505)
++++|. .++.+|||+|+..+.+..+ .....++|++.++..++...+..+. .++++||+++++.++++|+.+|
T Consensus 71 v~~~l~---~~~~ivi~~s~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG- 143 (153)
T d2i76a2 71 VANHLN---LGDAVLVHCSGFLSSEIFK---KSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEIS- 143 (153)
T ss_dssp HHTTTC---CSSCCEEECCSSSCGGGGC---SSSEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHC-
T ss_pred HHhhhc---ccceeeeecccchhhhhhh---hhccccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHC-
Confidence 765542 4789999999998765432 2233467888888888777766655 7888999999999999999999
Q ss_pred ccCCCCceEEeCC
Q 010637 168 QVDDGPCVTYIGE 180 (505)
Q Consensus 168 ~~~~~~~v~~vG~ 180 (505)
.+++++++
T Consensus 144 -----~~~~~i~~ 151 (153)
T d2i76a2 144 -----GKYFVIPS 151 (153)
T ss_dssp -----SCEEECCG
T ss_pred -----CcEEEeCC
Confidence 67888864
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.73 E-value=8.1e-18 Score=149.53 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=113.3
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 5 ALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 5 ~~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
.++||+||| +|.||.+||++|.++||+|.+|||++... .++.++. +|.+++++|..
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~--------------------~~~~~~~---~~~v~~~~~~~ 64 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAV--------------------AESILAN---ADVVIVSVPIN 64 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGG--------------------HHHHHTT---CSEEEECSCGG
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccc--------------------cchhhhh---ccccccccchh
Confidence 356899999 99999999999999999999999986532 2233444 89999999985
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCHHHhhcCC--ccccCCCHHHHHHHHH
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP--SLMPGGSFEAYNNIRD 160 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~~~a~~G~--~im~gg~~ea~~~v~~ 160 (505)
++..++.++.+.+.++.+|+|++|+.+...+++.+.+ ..+|++ .|++|++.+...|. .+++|++++.++++.+
T Consensus 65 -~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~---~~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~~~ 140 (152)
T d2pv7a2 65 -LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH---TGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLE 140 (152)
T ss_dssp -GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHH
T ss_pred -hheeeeecccccccCCceEEEecccCHHHHHHHHHHc---cCCEEEecccCCCcccccCCcEEEEecCCCHHHHHHHHH
Confidence 7888999999999999999999999887776665433 346775 59999888888887 4556889999999999
Q ss_pred HHHHHhcc
Q 010637 161 ILQKVAAQ 168 (505)
Q Consensus 161 ll~~iga~ 168 (505)
+|+.+|++
T Consensus 141 ll~~~Ga~ 148 (152)
T d2pv7a2 141 QIQIWGAK 148 (152)
T ss_dssp HHHHTTCE
T ss_pred HHHHhCCE
Confidence 99999943
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.69 E-value=3.7e-16 Score=141.08 Aligned_cols=151 Identities=15% Similarity=0.181 Sum_probs=114.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|++|+|||+|.||.+||++|.++|+ +|++||++++..+.+.+.+.. -....+..+... ..+|+||+|+|..
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~-----~~~~~~~~~~~~--~~~dlIila~p~~ 73 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----DEGTTSIAKVED--FSPDFVMLSSPVR 73 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----SEEESCGGGGGG--TCCSEEEECSCHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc-----hhhhhhhhhhhc--cccccccccCCch
Confidence 3479999999999999999999996 688999999998888776532 134555554433 1389999999984
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC-CCCCC----HHHhh----cCC-cccc---CC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGG----EEGAR----HGP-SLMP---GG 150 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsGg----~~~a~----~G~-~im~---gg 150 (505)
.+..+++++.+.+.++.+|+|.+++.....+...+.+.. +|++. |+.|. ++.+. .|. .+++ +.
T Consensus 74 -~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~---~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~ 149 (171)
T d2g5ca2 74 -TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKT 149 (171)
T ss_dssp -HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSS
T ss_pred -hhhhhhhhhhccccccccccccccccHHHHHHHHHhhcc---cccccccccccccccHHHHHHHhhCCCeEEEecCCCC
Confidence 788999999999999999999999988777777666554 35543 55553 33332 333 3332 45
Q ss_pred CHHHHHHHHHHHHHHhc
Q 010637 151 SFEAYNNIRDILQKVAA 167 (505)
Q Consensus 151 ~~ea~~~v~~ll~~iga 167 (505)
+++.++.++++|+.+|+
T Consensus 150 ~~~~~~~v~~~~~~lG~ 166 (171)
T d2g5ca2 150 DKKRLKLVKRVWEDVGG 166 (171)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 88999999999999994
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.61 E-value=1.6e-15 Score=134.66 Aligned_cols=141 Identities=15% Similarity=0.172 Sum_probs=105.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|||||||+|.||.+|+.+|.++|++|.+|+|++++.+++.++. ++..+.+++++++. +|+||+||++ +.+
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~------g~~~~~~~~~~~~~---~dvIilavkp-~~~ 70 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL------ALPYAMSHQDLIDQ---VDLVILGIKP-QLF 70 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH------TCCBCSSHHHHHHT---CSEEEECSCG-GGH
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc------ceeeechhhhhhhc---cceeeeecch-HhH
Confidence 6899999999999999999999999999999999999887654 35678899999997 9999999987 456
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCHHHhhcCCcccc-C--CCHHHHHHHHHHH
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGPSLMP-G--GSFEAYNNIRDIL 162 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~~~a~~G~~im~-g--g~~ea~~~v~~ll 162 (505)
++++ +.+.++++||+..++.. ...+.+.+.. +..++. +|-.+ .....|.+.+. + .+++..+.++++|
T Consensus 71 ~~vl----~~l~~~~~iis~~agi~--~~~l~~~l~~-~~~ivr~mPN~~--~~v~~g~~~~~~~~~~~~~~~~~v~~l~ 141 (152)
T d2ahra2 71 ETVL----KPLHFKQPIISMAAGIS--LQRLATFVGQ-DLPLLRIMPNMN--AQILQSSTALTGNALVSQELQARVRDLT 141 (152)
T ss_dssp HHHH----TTSCCCSCEEECCTTCC--HHHHHHHHCT-TSCEEEEECCGG--GGGTCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHh----hhcccceeEeccccccc--HHHHHhhhcc-cccchhhccchh--hhcCccceEEEeCCCCCHHHHHHHHHHH
Confidence 6554 55778999998877653 3445555533 344443 34322 11223443333 3 2689999999999
Q ss_pred HHHh
Q 010637 163 QKVA 166 (505)
Q Consensus 163 ~~ig 166 (505)
+.+|
T Consensus 142 ~~~G 145 (152)
T d2ahra2 142 DSFG 145 (152)
T ss_dssp HTTE
T ss_pred HhCC
Confidence 9999
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.54 E-value=2.5e-15 Score=142.44 Aligned_cols=161 Identities=13% Similarity=0.040 Sum_probs=129.8
Q ss_pred cEEEEcccH--HHHHHHH------HHHhCCCcEEEEeCChHHH-HHHHHhhc---------------ccC----------
Q 010637 8 RIGLAGLAV--MGQNLAL------NVAEKGFPISVYNRTTSKV-DETLDRAH---------------REG---------- 53 (505)
Q Consensus 8 ~IgIIGlG~--MG~~lA~------~La~~G~~V~v~dr~~~~~-~~l~~~~~---------------~~g---------- 53 (505)
+++++|+|. ||..++. +|++.|+.|++.|.+++++ +.+.+... ...
T Consensus 42 ~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~ 121 (242)
T d2b0ja2 42 SSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHL 121 (242)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEES
T ss_pred eeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhhc
Confidence 477888886 8888877 7899999999999998764 32221100 000
Q ss_pred ----CCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEE
Q 010637 54 ----QLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (505)
Q Consensus 54 ----~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (505)
..+++.++|+.|++++ +|+||+|||.+..+.++++++.+++++|.+|+|+||+.+..+.++.+.+.+++++|+
T Consensus 122 ~~pEe~Gv~v~~d~~Eav~~---ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi 198 (242)
T d2b0ja2 122 VHPEDVGLKVTSDDREAVEG---ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNIT 198 (242)
T ss_dssp SCGGGGTCEEESCHHHHHTT---CSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEE
T ss_pred CCHHHCCCEEECCHHHHHhc---CCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEE
Confidence 0147788999999998 999999999988899999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHhhcCC-ccccCCCHHHHHHHHHHHHHHhcccCCCCceEEe
Q 010637 130 GMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYI 178 (505)
Q Consensus 130 ~~pvsGg~~~a~~G~-~im~gg~~ea~~~v~~ll~~iga~~~~~~~v~~v 178 (505)
+++..++++ ...+. .++.+++++.++++.++|+.+| +.++.+
T Consensus 199 ~~hp~a~pe-~~g~~li~~~~aseE~iekv~elles~G------k~~~vv 241 (242)
T d2b0ja2 199 SYHPGCVPE-MKGQVYIAEGYASEEAVNKLYEIGKIAR------GKAFKM 241 (242)
T ss_dssp ECBCSSCTT-TCCCEEEEESSSCHHHHHHHHHHHHHHH------SCEEEE
T ss_pred CCCccCcCc-cccceEEecCCCCHHHHHHHHHHHHHHC------CCeEeC
Confidence 887766654 22233 6677889999999999999999 666553
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.53 E-value=1.3e-13 Score=127.92 Aligned_cols=155 Identities=14% Similarity=0.114 Sum_probs=115.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc---------------ccCCCCeeeeCCHHHHHhhcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH---------------REGQLPLTGHYTPRDFVLSIQ 71 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~---------------~~g~~~i~~~~s~~e~v~~l~ 71 (505)
|||+|||+|.+|.++|..|+++||+|.+||.++++++.+.+... ..+ ++...++..+++..
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~--~~~~~~~~~~~i~~-- 76 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTG--RLSGTTDFKKAVLD-- 76 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEESCHHHHHHT--
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhccc--ccccCCCHHHHHhh--
Confidence 68999999999999999999999999999999999887753211 111 56788899998887
Q ss_pred CCcEEEEEcCCC---------chHHHHHHHHH---hcCCCCcEEEecCCCCchhHHHHHHHHHH--------CCCeEEeC
Q 010637 72 RPRSVIILVKAG---------SPVDQTIAALS---EHMSPGDCIIDGGNEWYLNTERRIHEASQ--------KGLLYLGM 131 (505)
Q Consensus 72 ~advIil~vp~~---------~~v~~vl~~l~---~~l~~g~iIId~st~~~~~t~~~~~~l~~--------~gi~~i~~ 131 (505)
+|++++|||.+ ..+..+++.+. ....++++||..||..|..++++...+.+ ..+++.-+
T Consensus 77 -~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~ 155 (202)
T d1mv8a2 77 -SDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTN 155 (202)
T ss_dssp -CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEEC
T ss_pred -CCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhh
Confidence 99999999874 23455555444 44668899999999999999987665422 24566677
Q ss_pred CCCCCH----HHhhcCCccccCC-CHHHHHHHHHHHHHHh
Q 010637 132 GVSGGE----EGARHGPSLMPGG-SFEAYNNIRDILQKVA 166 (505)
Q Consensus 132 pvsGg~----~~a~~G~~im~gg-~~ea~~~v~~ll~~ig 166 (505)
|-.-.+ .....-+.++.|| ++++.+.++++++.+.
T Consensus 156 PE~~~~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~ 195 (202)
T d1mv8a2 156 PEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELD 195 (202)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSS
T ss_pred hhhhcccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Confidence 743322 2223333566676 6788999999998887
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.51 E-value=1.1e-14 Score=129.03 Aligned_cols=141 Identities=14% Similarity=0.110 Sum_probs=101.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|||||||+|.||.+|+.+|.++| ++|.+|||++++.+.+.++. ++...++.+++ .. +|+||++|++ ..
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~------~~~~~~~~~~v-~~---~Div~lavkP-~~ 69 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL------GVETSATLPEL-HS---DDVLILAVKP-QD 69 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT------CCEEESSCCCC-CT---TSEEEECSCH-HH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc------ccccccccccc-cc---cceEEEecCH-HH
Confidence 68999999999999999999887 99999999999999988764 35667777664 33 8999999986 46
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe-CCCCCCHHHhhcCCc-cccC--CCHHHHHHHHHH
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGPS-LMPG--GSFEAYNNIRDI 161 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsGg~~~a~~G~~-im~g--g~~ea~~~v~~l 161 (505)
+.++++++. ..+.+||+..++.+ ...+.+.+.. ..+++. +|-. +.....|.+ +..+ .+++..+.++++
T Consensus 70 ~~~v~~~l~---~~~~~viS~~ag~~--~~~l~~~l~~-~~~iir~mpn~--p~~~~~g~t~~~~~~~~~~~~~~~v~~l 141 (152)
T d1yqga2 70 MEAACKNIR---TNGALVLSVAAGLS--VGTLSRYLGG-TRRIVRVMPNT--PGKIGLGVSGMYAEAEVSETDRRIADRI 141 (152)
T ss_dssp HHHHHTTCC---CTTCEEEECCTTCC--HHHHHHHTTS-CCCEEEEECCG--GGGGTCEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhHHHHh---hcccEEeecccCCC--HHHHHHHhCc-CcceEeecccc--hhHhcCCcEEEEeCCCCCHHHHHHHHHH
Confidence 777765543 45789998877764 3344554432 223333 2322 223345553 3333 367888999999
Q ss_pred HHHHh
Q 010637 162 LQKVA 166 (505)
Q Consensus 162 l~~ig 166 (505)
|+.+|
T Consensus 142 ~~~~G 146 (152)
T d1yqga2 142 MKSVG 146 (152)
T ss_dssp HHTTE
T ss_pred HHhCC
Confidence 99999
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=9.4e-14 Score=127.83 Aligned_cols=159 Identities=10% Similarity=0.143 Sum_probs=112.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc-------ccCC---------------CCeeeeCC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REGQ---------------LPLTGHYT 62 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~---------------~~i~~~~s 62 (505)
|..||+|||+|.||.++|..++.+||+|.+||++++.++...+... ..+. .++..+.+
T Consensus 3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d 82 (192)
T d1f0ya2 3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD 82 (192)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence 3468999999999999999999999999999999986554332110 0000 04667788
Q ss_pred HHHHHhhcCCCcEEEEEcCCCchHHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHH--HC--CCeEEeCCCCCCH
Q 010637 63 PRDFVLSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QK--GLLYLGMGVSGGE 137 (505)
Q Consensus 63 ~~e~v~~l~~advIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~--~~--gi~~i~~pvsGg~ 137 (505)
..+.+.. +|+|+.++|++..++.-+ .++.+.++++.++...|++.+.+ +++..+. ++ |.||+..|-.-..
T Consensus 83 ~~~a~~~---ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~ig~HffnP~~~~~l 157 (192)
T d1f0ya2 83 AASVVHS---TDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT--SIANATTRQDRFAGLHFFNPVPVMKL 157 (192)
T ss_dssp HHHHTTS---CSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH--HHHTTSSCGGGEEEEEECSSTTTCCE
T ss_pred hHhhhcc---cceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccc--hhhhhccCHhHEEeeccccccCcccE
Confidence 8777766 999999999998877554 78888888888877666655432 3433332 22 6788766522111
Q ss_pred HHhhcCCccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeCC
Q 010637 138 EGARHGPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180 (505)
Q Consensus 138 ~~a~~G~~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG~ 180 (505)
. -+++| .+++.++.+..+++.+| +.++.+.+
T Consensus 158 V------EIv~g~~T~~~~i~~~~~~~~~lg------k~pV~v~D 190 (192)
T d1f0ya2 158 V------EVIKTPMTSQKTFESLVDFSKALG------KHPVSCKD 190 (192)
T ss_dssp E------EEECCTTCCHHHHHHHHHHHHHTT------CEEEEECS
T ss_pred E------EEcCCCCCCHHHHHHHHHHHHHcC------CEEEEeec
Confidence 0 13333 48899999999999999 77777743
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.44 E-value=7.4e-14 Score=128.23 Aligned_cols=154 Identities=10% Similarity=0.011 Sum_probs=112.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCC-------CCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ-------LPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~-------~~i~~~~s~~e~v~~l~~advIil 78 (505)
|.||+|||+|.||++||..|+++||+|.+|+|+++.++.+.+.+.+... .++.++.+++++++. +|+||+
T Consensus 7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~---ad~iii 83 (189)
T d1n1ea2 7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG---AEIILF 83 (189)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT---CSCEEE
T ss_pred eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCC---CCEEEE
Confidence 4579999999999999999999999999999999999988876533210 168889999999887 999999
Q ss_pred EcCCCchHHHHHHHHHhc-----CCCCcEEEecCCCCchhHHH-HHHHHHH----CCCeEEeCCCCCCHHHhhcCC--cc
Q 010637 79 LVKAGSPVDQTIAALSEH-----MSPGDCIIDGGNEWYLNTER-RIHEASQ----KGLLYLGMGVSGGEEGARHGP--SL 146 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~-----l~~g~iIId~st~~~~~t~~-~~~~l~~----~gi~~i~~pvsGg~~~a~~G~--~i 146 (505)
+||. ..++.+++++.+. +.++.+|+.++.+....+.. ..+.+.+ ..+.++..|-.. .+-++.-| ..
T Consensus 84 avPs-~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A-~Ev~~~~pt~~v 161 (189)
T d1n1ea2 84 VIPT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFA-IEVATGVFTCVS 161 (189)
T ss_dssp CSCH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCH-HHHHTTCCEEEE
T ss_pred cCcH-HHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcH-HHHHcCCCcEEE
Confidence 9998 4889999887653 45677888888877544433 3333332 223445544332 34455555 44
Q ss_pred ccCCCHHHHHHHHHHHHH
Q 010637 147 MPGGSFEAYNNIRDILQK 164 (505)
Q Consensus 147 m~gg~~ea~~~v~~ll~~ 164 (505)
+.+-+.+..+.++++|+.
T Consensus 162 iAs~~~~~a~~i~~lfst 179 (189)
T d1n1ea2 162 IASADINVARRLQRIMST 179 (189)
T ss_dssp EECSSHHHHHHHHHHHSC
T ss_pred EEeCCHHHHHHHHHHhCC
Confidence 455688888889988863
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.40 E-value=5.7e-13 Score=115.23 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=93.7
Q ss_pred CCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHH
Q 010637 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKI 259 (505)
Q Consensus 180 ~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i 259 (505)
+.|+|+.+|+++|.+.++.+++++|++.++++.| ++++++.+++ +.+.+.|+.++...+.+.. ++|.|+|.++.+
T Consensus 1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~G-id~~~~~~~l---~~~~~~S~~~~~~~~~~~~-~~~~~~f~~~l~ 75 (133)
T d1vpda1 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAG-VNPDLVYQAI---RGGLAGSTVLDAKAPMVMD-RNFKPGFRIDLH 75 (133)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCCHHHHHHHHHHHT-TCCCCSSBHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---Hhccccchhhhhccchhhh-ccCCCCchHHHH
Confidence 3699999999999999999999999999999999 9999999998 6788899999998876665 468999999999
Q ss_pred HhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010637 260 LDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (505)
Q Consensus 260 ~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s 296 (505)
.||++ ++.+.|.+.|+|+|+...+ ...|..
T Consensus 76 ~KDl~------l~~~~a~~~~~~~p~~~~~-~~~~~~ 105 (133)
T d1vpda1 76 IKDLA------NALDTSHGVGAQLPLTAAV-MEMMQA 105 (133)
T ss_dssp HHHHH------HHHHHHHHHTCCCHHHHHH-HHHHHH
T ss_pred HHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 99997 9999999999999999865 444443
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.39 E-value=6.1e-13 Score=115.15 Aligned_cols=107 Identities=19% Similarity=0.176 Sum_probs=91.6
Q ss_pred CCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhc------cccccCCCc
Q 010637 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIF------KVKDEYGEG 253 (505)
Q Consensus 180 ~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il------~~~~~~~~~ 253 (505)
|.|+|+.+|++||.+.++.+.+++|++.++++.| +|++.+.+++ +.+.+.|+.++...+.. ...++|.++
T Consensus 1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~G-ld~~~~~eil---~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (134)
T d3cuma1 1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANG-LEAKVLAEIM---RRSSGGNWALEVYNPWPGVMENAPASRDYSGG 76 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSS
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH---HhcccchhhhhhhhhhhhccchhhhcCCCCCC
Confidence 5799999999999999999999999999999999 9999999998 67889999998754321 112457889
Q ss_pred hhHHHHHhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 254 ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 254 ~~l~~i~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
|.++.+.||++ ++.+.|.+.|+|+|+...+ ...|..+
T Consensus 77 f~~~l~~KDl~------l~~~~a~~~g~~~p~~~~a-~~~~~~a 113 (134)
T d3cuma1 77 FMAQLMAKDLG------LAQEAAQASASSTPMGSLA-LSLYRLL 113 (134)
T ss_dssp SBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHHHHH
T ss_pred cchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 99999999996 9999999999999998865 4555544
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.39 E-value=1.4e-12 Score=118.03 Aligned_cols=113 Identities=19% Similarity=0.123 Sum_probs=89.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhccc----CC----CCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----GQ----LPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~----g~----~~i~~~~s~~e~v~~l~~advIil 78 (505)
+||+|||+|.||..+|..|+++||+|.+|+|++++.+.+.+.+... +. .....+++++|.++. +|+||+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---aD~iii 78 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD---ADVILI 78 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT---CSEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcC---CCEEEE
Confidence 5899999999999999999999999999999999999887654210 00 023456788888887 999999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~ 124 (505)
++|+. .++.+++++.+++.++.+|+..++... .+....+.+...
T Consensus 79 ~v~~~-~~~~~~~~i~~~l~~~~~iv~~~g~~~-~~~~~~~~~~~~ 122 (184)
T d1bg6a2 79 VVPAI-HHASIAANIASYISEGQLIILNPGATG-GALEFRKILREN 122 (184)
T ss_dssp CSCGG-GHHHHHHHHGGGCCTTCEEEESSCCSS-HHHHHHHHHHHT
T ss_pred EEchh-HHHHHHHHhhhccCCCCEEEEeCCCCc-cHHHHHHHHHHh
Confidence 99996 789999999999999999887665544 444555555554
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.39 E-value=4.8e-13 Score=122.40 Aligned_cols=155 Identities=16% Similarity=0.215 Sum_probs=108.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc-------ccCCC----------CeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REGQL----------PLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~~----------~i~~~~s~~e~v~ 68 (505)
..||+|||+|.||.++|..++.+|++|.+||++++.+++..+... ..+.. ++....+.+++ .
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 82 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF-G 82 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG-G
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc-c
Confidence 468999999999999999999999999999999987665433210 00000 34555565553 3
Q ss_pred hcCCCcEEEEEcCCCchHHH-HHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH--C--CCeEEeCCC-CCCHHHhhc
Q 010637 69 SIQRPRSVIILVKAGSPVDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--K--GLLYLGMGV-SGGEEGARH 142 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~--gi~~i~~pv-sGg~~~a~~ 142 (505)
+ +|+||.++|+...++. ++.+|.+..+++.||...|++.+.+ ++.+.+.. + |.||+.+|- ....
T Consensus 83 ~---adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~--~la~~~~~p~r~~g~Hf~nP~~~~~lV----- 152 (186)
T d1wdka3 83 N---VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS--LLAKALKRPENFVGMHFFNPVHMMPLV----- 152 (186)
T ss_dssp G---CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH--HHGGGCSCGGGEEEEECCSSTTTCCEE-----
T ss_pred c---cceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHH--HHHHhccCchheEeeccccCcccCCeE-----
Confidence 3 9999999999988875 4478888888888887776666443 34333322 2 566665441 1111
Q ss_pred CCccccC--CCHHHHHHHHHHHHHHhcccCCCCceEEeC
Q 010637 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179 (505)
Q Consensus 143 G~~im~g--g~~ea~~~v~~ll~~iga~~~~~~~v~~vG 179 (505)
-++.| .+++.++.+..+++.+| +.++.+.
T Consensus 153 --Eiv~~~~T~~~~~~~~~~~~~~lg------k~pv~v~ 183 (186)
T d1wdka3 153 --EVIRGEKSSDLAVATTVAYAKKMG------KNPIVVN 183 (186)
T ss_dssp --EEEECSSCCHHHHHHHHHHHHHTT------CEEEEEE
T ss_pred --EECCCCCCCHHHHHHHHHHHHHcC------CEEEEEe
Confidence 13333 58899999999999999 7777774
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=1.1e-12 Score=113.25 Aligned_cols=105 Identities=15% Similarity=0.129 Sum_probs=91.6
Q ss_pred CcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhh-hccccccCCCchhHHHH
Q 010637 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD-IFKVKDEYGEGELVDKI 259 (505)
Q Consensus 181 ~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~-il~~~~~~~~~~~l~~i 259 (505)
+|+|+.+|+++|.+..+.+.+++|++.++++.| +|++++.+++ +.+.+.|+.++...+ .+. +++|+++|.++.+
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~G-ld~~~~~~vl---~~s~~~s~~~~~~~p~~~~-~~~~~~~f~~~~~ 75 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQG-VSAEKALEVI---NASSGRSNATENLIPQRVL-TRAFPKTFALGLL 75 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCBHHHHHTHHHHTT-TSCCCCSSBHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhhhhhhhhhhhhhHHHH-HHhhhhhhHHHHH
Confidence 489999999999999999999999999999999 9999999998 678889999888765 333 3678999999999
Q ss_pred HhhhCCCchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010637 260 LDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (505)
Q Consensus 260 ~~~~~~kgtg~~~~~~A~~~gvp~p~i~~av~~r~~s~ 297 (505)
.||++ ++.+.|.++|+|+|+...+ ...|..+
T Consensus 76 ~KDl~------l~~~~a~~~g~~~pl~~~~-~~~~~~a 106 (132)
T d2cvza1 76 VKDLG------IAMGVLDGEKAPSPLLRLA-REVYEMA 106 (132)
T ss_dssp HHHHH------HHHHHHTTTCCCCHHHHHH-HHHHHHH
T ss_pred hhHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 99996 9999999999999998865 4555443
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.36 E-value=9.4e-13 Score=119.75 Aligned_cols=151 Identities=11% Similarity=0.124 Sum_probs=100.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC--hHHHHHHHHhhcccC---CC---CeeeeCCHHHHHhhcCCCcEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRT--TSKVDETLDRAHREG---QL---PLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~--~~~~~~l~~~~~~~g---~~---~i~~~~s~~e~v~~l~~advIil 78 (505)
|||+|||+|.||.++|..|+++|++|.+|.|+ ++.++.+.+...+.. .+ ++...++++++++. +|+||+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---ad~Ii~ 77 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLEN---AEVVLL 77 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTT---CSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhc---cchhhc
Confidence 69999999999999999999999999999884 445666654432110 00 24556778888877 999999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCC-chhH--HHHHHHHHHC------CCeEEeCCCCCCHHHhhcCC--ccc
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW-YLNT--ERRIHEASQK------GLLYLGMGVSGGEEGARHGP--SLM 147 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~-~~~t--~~~~~~l~~~------gi~~i~~pvsGg~~~a~~G~--~im 147 (505)
+||. ..++++++++.+++++..+|+ ++.+. +.+. ....+.+.+. .+-++..|-.. .+-+..-| .++
T Consensus 78 avps-~~~~~~~~~l~~~l~~~~ii~-~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A-~Ei~~~~pt~~vi 154 (180)
T d1txga2 78 GVST-DGVLPVMSRILPYLKDQYIVL-ISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIA-REVAKRMPTTVVF 154 (180)
T ss_dssp CSCG-GGHHHHHHHHTTTCCSCEEEE-CCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCH-HHHHTTCCEEEEE
T ss_pred ccch-hhhHHHHHhhccccccceecc-cccCccccccccccchHHHHhhhcccccceeEEcCCccH-HHHHcCCCcEEEE
Confidence 9998 589999999999997655554 44443 2211 1122223221 12334444332 34455555 455
Q ss_pred cCCCHHHHHHHHHHHH
Q 010637 148 PGGSFEAYNNIRDILQ 163 (505)
Q Consensus 148 ~gg~~ea~~~v~~ll~ 163 (505)
++.+.+..+.++++|+
T Consensus 155 as~~~~~a~~i~~~f~ 170 (180)
T d1txga2 155 SSPSESSANKMKEIFE 170 (180)
T ss_dssp ECSCHHHHHHHHHHHC
T ss_pred EcCCHHHHHHHHHHHC
Confidence 6678888888888875
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.13 E-value=3.7e-10 Score=103.35 Aligned_cols=151 Identities=12% Similarity=0.055 Sum_probs=99.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcc-----------cCCCCeeeeCCHHHHHhhcCCCcE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR-----------EGQLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~-----------~g~~~i~~~~s~~e~v~~l~~adv 75 (505)
|||+|||+|.+|.++|..|+ .||+|.+||.++++++.+...... ....++....+....... +|+
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~---~~i 76 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKE---AEL 76 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHH---CSE
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhc---ccc
Confidence 68999999999999998886 699999999999998877642100 000145555666665566 999
Q ss_pred EEEEcCCCc----------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCC--CCH--HHhh
Q 010637 76 VIILVKAGS----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS--GGE--EGAR 141 (505)
Q Consensus 76 Iil~vp~~~----------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs--Gg~--~~a~ 141 (505)
|++++|... .++.....+.. ..++.+|+-.||..|.+++++...+.+. ++.-+|-. -|. ....
T Consensus 77 i~v~vpt~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~iii~Stv~pgt~~~~~~~~~~~--~~~~~PE~i~~G~ai~d~~ 153 (196)
T d1dlja2 77 VIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDNL 153 (196)
T ss_dssp EEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHHH
T ss_pred ccccCCccccccCCCcceeEEeehhhhhhh-cccceeEEeeeecCceeeeeeeeccchh--hhccchhhcchhhhHhhcc
Confidence 999998763 23333344444 3578899999999999998887766554 34445522 121 1222
Q ss_pred cCCccccCCCHHHHHHHHHHHHH
Q 010637 142 HGPSLMPGGSFEAYNNIRDILQK 164 (505)
Q Consensus 142 ~G~~im~gg~~ea~~~v~~ll~~ 164 (505)
.-+.++.|++.+...++..+++.
T Consensus 154 ~p~riv~G~~~~~~~~~~~~~~~ 176 (196)
T d1dlja2 154 YPSRIIVSCEENDSPKVKADAEK 176 (196)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEeCCHhhHHHHHHHHHH
Confidence 33367788876554444443333
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=1.1e-11 Score=110.05 Aligned_cols=101 Identities=14% Similarity=0.121 Sum_probs=76.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
|||+|||+|.||+.+|..|+++||+|++++|++++.+..................+..+.... +|+||+++|+. ++
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~iii~vka~-~~ 76 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLAT---SDLLLVTLKAW-QV 76 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHT---CSEEEECSCGG-GH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcc---cceEEEeeccc-ch
Confidence 699999999999999999999999999999998754432211111000011222333444455 99999999995 78
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
+++++.+.+.+.++.+|+.+.|+..
T Consensus 77 ~~~~~~l~~~~~~~~~Iv~~qNG~~ 101 (167)
T d1ks9a2 77 SDAVKSLASTLPVTTPILLIHNGMG 101 (167)
T ss_dssp HHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred HHHHHhhccccCcccEEeeccCccc
Confidence 9999999999999999999999864
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.85 E-value=3.7e-09 Score=96.46 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=95.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+||+....-.. ... ++....++++++.. +|+|++++|-....
T Consensus 50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-~~~-------~~~~~~~l~~ll~~---sD~i~~~~plt~~T 118 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE-RAL-------GLQRVSTLQDLLFH---SDCVTLHCGLNEHN 118 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH-HHH-------TCEECSSHHHHHHH---CSEEEECCCCCTTC
T ss_pred ceEEEeccccccccceeeeeccccceeeccCcccccch-hhh-------ccccccchhhcccc---CCEEEEeecccccc
Confidence 47999999999999999999999999999987653221 111 25667899999998 99999999988777
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCC
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg 136 (505)
+..+ .+.+..++++.++|++|-+..-+...+.+.+.+..+.....-|.-.
T Consensus 119 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~ 169 (193)
T d1mx3a1 119 HHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHES 169 (193)
T ss_dssp TTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSS
T ss_pred hhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCceEEEEEcCCC
Confidence 7776 5677889999999999999999999999999886554443334433
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.80 E-value=7.1e-09 Score=94.42 Aligned_cols=122 Identities=15% Similarity=0.209 Sum_probs=99.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+||+........... ......+++++... +|+|++++|-....
T Consensus 48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~-------~~~~~~~l~~ll~~---sD~v~l~~plt~~T 117 (191)
T d1gdha1 48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASY-------QATFHDSLDSLLSV---SQFFSLNAPSTPET 117 (191)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHH-------TCEECSSHHHHHHH---CSEEEECCCCCTTT
T ss_pred cceEEeecccchHHHHHHHHhhccccccccccccccchhhcc-------cccccCCHHHHHhh---CCeEEecCCCCchH
Confidence 579999999999999999999999999999876543333322 13556789999998 99999999998877
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~ 138 (505)
+.++ ++.+..+++|.++|++|-+..-+...+.+.+.+..+.....-|.-.++
T Consensus 118 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV~~~EP 170 (191)
T d1gdha1 118 RYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP 170 (191)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred hheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEEEECCCCCC
Confidence 7777 577888999999999999999999999999998766555545555443
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.79 E-value=3.7e-09 Score=95.52 Aligned_cols=105 Identities=11% Similarity=0.192 Sum_probs=90.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|..+..-|.+|.+|||++.. . ......++++++.. +|+|++++|.....
T Consensus 43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~-------~------~~~~~~~l~ell~~---sDiv~~~~pl~~~t 106 (181)
T d1qp8a1 43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE-------G------PWRFTNSLEEALRE---ARAAVCALPLNKHT 106 (181)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC-------S------SSCCBSCSHHHHTT---CSEEEECCCCSTTT
T ss_pred ceEEEeccccccccceeeeeccccccccccccccc-------c------ceeeeechhhhhhc---cchhhccccccccc
Confidence 57999999999999999999999999999998642 1 12345788998887 99999999998877
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCe
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+.++ ++.+..++++.++|++|.+..-+...+.+.+.+..+.
T Consensus 107 ~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~ 148 (181)
T d1qp8a1 107 RGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF 148 (181)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred ccccccceeeeccccceEEeccccccccchhhhhhcccCcEE
Confidence 7777 6788889999999999999888999999999886554
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.74 E-value=1.1e-08 Score=93.41 Aligned_cols=119 Identities=15% Similarity=0.109 Sum_probs=95.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.|..-|.+|.+||+....... .. .....+++++... +|+|++++|.....
T Consensus 44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~--~~--------~~~~~~l~~~l~~---sDii~~~~plt~~T 110 (197)
T d1j4aa1 44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE--KK--------GYYVDSLDDLYKQ---ADVISLHVPDVPAN 110 (197)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH--HT--------TCBCSCHHHHHHH---CSEEEECSCCCGGG
T ss_pred CeEEEecccccchhHHHhHhhhcccccccCcccccccc--cc--------eeeeccccccccc---cccccccCCccccc
Confidence 57999999999999999999999999999987654222 11 1235689999988 99999999988777
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~ 138 (505)
+.++ .+.+..++++.++|++|-+..-+...+.+.+.+..+.....-|.-.|+
T Consensus 111 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~Ep 163 (197)
T d1j4aa1 111 VHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEV 163 (197)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCT
T ss_pred cccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeeccccCC
Confidence 7777 567778999999999999998899999999988655544445555443
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.72 E-value=1.3e-08 Score=92.51 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=93.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|||||+|.+|+.+|+.|..-|.+|.+||+........... ++....+++++.+. +|+|++++|.....
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~-------~~~~~~~l~~~l~~---sD~v~~~~plt~~T 114 (188)
T d2naca1 45 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL-------NLTWHATREDMYPV---CDVVTLNCPLHPET 114 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHH-------TCEECSSHHHHGGG---CSEEEECSCCCTTT
T ss_pred cceeeccccccchhhhhhhhccCceEEEEeeccccccccccc-------cccccCCHHHHHHh---ccchhhcccccccc
Confidence 589999999999999999999999999999875443333332 25667899999887 99999999998887
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCe
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (505)
+.++ .+....+++|.++|++|.+..-+...+.+.+.+..+.
T Consensus 115 ~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ 156 (188)
T d2naca1 115 EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLA 156 (188)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEE
T ss_pred hhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCce
Confidence 8777 6778889999999999999999999999999876554
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.69 E-value=2.7e-08 Score=89.92 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=96.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.+..-|.+|.+||+......... . .+. ..+++|++.. +|+|++++|-....
T Consensus 45 k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~-~-------~~~-~~~l~ell~~---sDiv~~~~Plt~~T 112 (184)
T d1ygya1 45 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ-L-------GIE-LLSLDDLLAR---ADFISVHLPKTPET 112 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH-H-------TCE-ECCHHHHHHH---CSEEEECCCCSTTT
T ss_pred eeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhh-c-------Cce-eccHHHHHhh---CCEEEEcCCCCchh
Confidence 5799999999999999999999999999998876543322 1 122 4689999988 99999999998888
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~ 137 (505)
+.++ .+.+..++++.++|++|-+..-+...+.+.+.+..+.....-|.-.+
T Consensus 113 ~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV~~~E 164 (184)
T d1ygya1 113 AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATE 164 (184)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSS
T ss_pred hhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeCCCCC
Confidence 8777 57788899999999999999999999999998876554443444433
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.65 E-value=2.2e-08 Score=91.73 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=95.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|||||+|.+|+.+|+.|..-|.+|.+||+.+.... . ......+++++... +|+|++++|.....
T Consensus 46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~-------~----~~~~~~~l~~l~~~---~D~v~~~~plt~~T 111 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD-------H----PDFDYVSLEDLFKQ---SDVIDLHVPGIEQN 111 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC-------C----TTCEECCHHHHHHH---CSEEEECCCCCGGG
T ss_pred eeeeeeecccccccccccccccceeeeccCCccchhh-------h----cchhHHHHHHHHHh---cccceeeecccccc
Confidence 5799999999999999999999999999998764310 0 11234689999888 99999999998887
Q ss_pred HHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHH
Q 010637 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (505)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~ 138 (505)
+.++ .+.+..++++.++|+++-+..-+...+.+.+.+..+.....-|.-.++
T Consensus 112 ~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~~~EP 164 (199)
T d1dxya1 112 THIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET 164 (199)
T ss_dssp TTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred cccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccccCCCC
Confidence 7777 567788999999999999999999999999987666555445655543
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.63 E-value=2.8e-08 Score=88.83 Aligned_cols=73 Identities=21% Similarity=0.211 Sum_probs=51.3
Q ss_pred CcEEEE-cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLA-GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgII-GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|||+|| |+|.||++||..|+++||+|.+|+|++++++.+.++....+........+....... .+.....++.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 74 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEA---CDIAVLTIPW 74 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHH---CSEEEECSCH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccch---hhhhhhheee
Confidence 689999 899999999999999999999999999998888765432110012223334444443 5566555544
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.63 E-value=2.1e-08 Score=91.00 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=93.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.++|||||+|.+|..+|+.+..-|.+|.+||+...... . ......+++++.+. +|+|++++|-...
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~-------~----~~~~~~~l~ell~~---sDii~i~~plt~~ 109 (188)
T d1sc6a1 44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL-------G----NATQVQHLSDLLNM---SDVVSLHVPENPS 109 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC-------T----TCEECSCHHHHHHH---CSEEEECCCSSTT
T ss_pred ceEEEEeecccchhhhhhhcccccceEeeccccccchh-------h----hhhhhhhHHHHHhh---ccceeecccCCcc
Confidence 35799999999999999999999999999998754210 0 23456789999988 9999999998877
Q ss_pred HHHHH-HHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
.+.++ ++.+..++++.++|+++-+..-+...+.+.+.+..+.....-|.-
T Consensus 110 T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV~~ 160 (188)
T d1sc6a1 110 TKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFP 160 (188)
T ss_dssp TTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC--
T ss_pred hhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEecCC
Confidence 77777 678888999999999999999999999999987655443333433
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.60 E-value=8e-08 Score=81.75 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=77.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~ 84 (505)
+++.|+|+|.+|..+|..|.+.|++|.++|.++++++++...+... +....+-.++.. .++.+|.+|++++++.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~----~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~ 76 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHA----VIANATEENELLSLGIRNFEYVIVAIGANI 76 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEE----EECCTTCTTHHHHHTGGGCSEEEECCCSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcc----eeeecccchhhhccCCccccEEEEEcCchH
Confidence 3689999999999999999999999999999999999887654321 111112222222 2455999999999875
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
....++..+........+|+-..+. ...+.+...|+.++-.|
T Consensus 77 ~~~~~~~~~~~~~~~~~iiar~~~~------~~~~~l~~~Gad~vi~p 118 (134)
T d2hmva1 77 QASTLTTLLLKELDIPNIWVKAQNY------YHHKVLEKIGADRIIHP 118 (134)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCSH------HHHHHHHHHTCSEEECH
T ss_pred HhHHHHHHHHHHcCCCcEEeecccH------hHHHHHHHCCCCEEECh
Confidence 5444445555555555666554442 23445566677665433
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.55 E-value=1.3e-07 Score=83.35 Aligned_cols=95 Identities=19% Similarity=0.164 Sum_probs=69.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+|.|||+|.||..++.+|...|. +|++++|+.++.+.+.+.... .....+++.+.+.+ +|+||.|++.+.
T Consensus 24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~----~~~~~~~~~~~l~~---~Divi~atss~~ 96 (159)
T d1gpja2 24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG----EAVRFDELVDHLAR---SDVVVSATAAPH 96 (159)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC----EECCGGGHHHHHHT---CSEEEECCSSSS
T ss_pred cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc----ccccchhHHHHhcc---CCEEEEecCCCC
Confidence 4689999999999999999999998 699999999999988876432 12333444444444 999999998764
Q ss_pred hH--HHHHHHHHhcC--CCCcEEEecC
Q 010637 85 PV--DQTIAALSEHM--SPGDCIIDGG 107 (505)
Q Consensus 85 ~v--~~vl~~l~~~l--~~g~iIId~s 107 (505)
.+ .+.++.....- .+..+|||.+
T Consensus 97 ~ii~~~~i~~~~~~r~~~~~~~iiDla 123 (159)
T d1gpja2 97 PVIHVDDVREALRKRDRRSPILIIDIA 123 (159)
T ss_dssp CCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred ccccHhhhHHHHHhcccCCCeEEEeec
Confidence 33 34444433322 2445999985
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.52 E-value=2.6e-07 Score=81.60 Aligned_cols=117 Identities=9% Similarity=0.059 Sum_probs=79.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCee--eeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLT--GHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~--~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++|.|||+|.||..+|.+|+++||+|+++||+.++++.+.+..... ... ......+....+...|+++.++|...
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~ 79 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHS---TPISLDVNDDAALDAEVAKHDLVISLIPYTF 79 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTE---EEEECCTTCHHHHHHHHTTSSEEEECSCGGG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhccccc---ccccccccchhhhHhhhhccceeEeeccchh
Confidence 5799999999999999999999999999999999999988754321 011 11233333333445899999988753
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
...+.... ...+..++|.+... .....+.+.....+..++..
T Consensus 80 -~~~~~~~~---~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~ 121 (182)
T d1e5qa1 80 -HATVIKSA---IRQKKHVVTTSYVS-PAMMELDQAAKDAGITVMNE 121 (182)
T ss_dssp -HHHHHHHH---HHHTCEEECSSCCC-HHHHHTHHHHHHTTCEEECS
T ss_pred -hhHHHHHH---HhhccceeecccCc-HHHHHHHHHhccccceeehh
Confidence 33333333 23467788877654 44556666666666666543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.51 E-value=6.7e-07 Score=75.79 Aligned_cols=114 Identities=16% Similarity=0.114 Sum_probs=77.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~ 84 (505)
|+|-|+|+|.+|..+|+.|.+.|++|.+.|.++++++++.+..... -+.+..+..++.+ .++.+|.++.+++++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~---vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d- 76 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL---VINGDCTKIKTLEDAGIEDADMYIAVTGKE- 76 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE---EEESCTTSHHHHHHTTTTTCSEEEECCSCH-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhh---hccCcccchhhhhhcChhhhhhhcccCCcH-
Confidence 6899999999999999999999999999999999999887652110 0222223334443 246799998888775
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
...-.+..+...+.+..+|+-..+.. ..+.+.+.|+.++-
T Consensus 77 ~~N~~~~~~~k~~~~~~iI~~~~~~~------~~~~l~~~G~d~vi 116 (132)
T d1lssa_ 77 EVNLMSSLLAKSYGINKTIARISEIE------YKDVFERLGVDVVV 116 (132)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECSSTT------HHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHcCCceEEEEecCHH------HHHHHHHCCCCEEE
Confidence 44444444555566777776655432 23455666775543
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.35 E-value=2.1e-06 Score=74.16 Aligned_cols=101 Identities=11% Similarity=0.083 Sum_probs=68.0
Q ss_pred cCCCCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChHHHHHHHHh----hcccCCCCeeeeCCHHHHHhhcCCCcEE
Q 010637 3 ASALSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDR----AHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 3 ~~~~~~IgIIGlG~MG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~----~~~~g~~~i~~~~s~~e~v~~l~~advI 76 (505)
|...+||+|||+|.+|..+|..|+.+| .+|.++|+++++++..... ....+ .......+++++. .||+|
T Consensus 2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~-~~~~~~~d~~~~~----~adiv 76 (146)
T d1ez4a1 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTA-PKKIYSGEYSDCK----DADLV 76 (146)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSC-CCEEEECCGGGGT----TCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccC-CceEeeccHHHhc----cccEE
Confidence 455679999999999999999999988 5899999999876533311 11111 1345566776653 39999
Q ss_pred EEEcCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 77 IILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 77 il~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+++..... .++++.+.+.++ .+..++|..||-
T Consensus 77 vitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvtNP 123 (146)
T d1ez4a1 77 VITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANP 123 (146)
T ss_dssp EECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred EEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeCCc
Confidence 99863321 233444566654 467788888874
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.32 E-value=2.2e-06 Score=75.25 Aligned_cols=109 Identities=20% Similarity=0.212 Sum_probs=77.0
Q ss_pred CcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~-lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
+||||||+|.||.. ....+... +++|. ++|+++++.+.+.+.. ++...++.+++.++ +|+|++++|+.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~------~~~~~~~~~~l~~~---~D~V~I~tp~~ 72 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW------RIPYADSLSSLAAS---CDAVFVHSSTA 72 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH------TCCBCSSHHHHHTT---CSEEEECSCTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc------cccccccchhhhhh---cccccccccch
Confidence 58999999999986 45556654 56654 7899999988887654 35567889998876 99999999997
Q ss_pred chHHHHHHHHHhcCCCC-cEEEec-CCCCchhHHHHHHHHHHCCCeE
Q 010637 84 SPVDQTIAALSEHMSPG-DCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g-~iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
...+-+.. .+. .| .++++- -.....+..++.+..++.|..+
T Consensus 73 ~h~~~~~~-al~---~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~ 115 (164)
T d1tlta1 73 SHFDVVST-LLN---AGVHVCVDKPLAENLRDAERLVELAARKKLTL 115 (164)
T ss_dssp HHHHHHHH-HHH---TTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred hccccccc-ccc---ccceeeccccccCCHHHHHHHHHHHHHcCCcE
Confidence 55444433 333 33 466663 2234567777777777777644
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.31 E-value=1e-06 Score=77.29 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=71.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHH-HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKV-DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~-~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.++|+|||.|.-|.+-|+||.+.|.+|++--|...+. +...+.+ +. ..+++|+++. +|+|++.+|+.
T Consensus 16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~G-------f~-v~~~~eA~~~---aDiim~L~PD~- 83 (182)
T d1np3a2 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHG-------LK-VADVKTAVAA---ADVVMILTPDE- 83 (182)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTT-------CE-EECHHHHHHT---CSEEEECSCHH-
T ss_pred CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhc-------cc-cccHHHHhhh---cCeeeeecchH-
Confidence 3589999999999999999999999999988876543 3333332 44 3588899987 99999999984
Q ss_pred hHHHHH-HHHHhcCCCCcEEEecC
Q 010637 85 PVDQTI-AALSEHMSPGDCIIDGG 107 (505)
Q Consensus 85 ~v~~vl-~~l~~~l~~g~iIId~s 107 (505)
.-.++. +.+.|.|++|+.+.-..
T Consensus 84 ~q~~vy~~~I~p~lk~g~~L~FaH 107 (182)
T d1np3a2 84 FQGRLYKEEIEPNLKKGATLAFAH 107 (182)
T ss_dssp HHHHHHHHHTGGGCCTTCEEEESC
T ss_pred HHHHHHHHhhhhhcCCCcEEEEec
Confidence 556666 57999999999887543
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.27 E-value=4.2e-06 Score=74.77 Aligned_cols=115 Identities=13% Similarity=0.140 Sum_probs=80.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+||||||+|.||...+..|... +++|. ++|+++++.+.+.+..... .....+++++++++. ...|+|++++|+..
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~-~~iD~v~I~tp~~~ 78 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYP--ESTKIHGSYESLLED-PEIDALYVPLPTSL 78 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCC--TTCEEESSHHHHHHC-TTCCEEEECCCGGG
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccc--cceeecCcHHHhhhc-cccceeeecccchh
Confidence 5899999999999999999876 56766 7899999988877653211 034678999999875 35899999999976
Q ss_pred hHHHHHHHHHhcCCCCc-EEEec-CCCCchhHHHHHHHHHHCCCeE
Q 010637 85 PVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
..+-... + ++.|. ++++- -.....+.+++.+..++++..+
T Consensus 79 h~~~~~~-~---l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~ 120 (184)
T d1ydwa1 79 HVEWAIK-A---AEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI 120 (184)
T ss_dssp HHHHHHH-H---HTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred hcchhhh-h---hhccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence 5544333 2 33444 45542 2234556677777777777654
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.13 E-value=1.1e-05 Score=69.72 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=69.0
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhc---ccCCCCee-eeCCHHHHHhhcCCCc
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAH---REGQLPLT-GHYTPRDFVLSIQRPR 74 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~---~~g~~~i~-~~~s~~e~v~~l~~ad 74 (505)
|......||+|||+|.+|..+|..|+..|. ++.++|+++++++....... ..-..... ...+.+++ +.+|
T Consensus 1 m~~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l----~daD 76 (148)
T d1ldna1 1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDC----RDAD 76 (148)
T ss_dssp CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGT----TTCS
T ss_pred CCCCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHh----ccce
Confidence 444344689999999999999999999886 79999999987543322110 00001222 34455443 3399
Q ss_pred EEEEEcCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCCCchhH
Q 010637 75 SVIILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 75 vIil~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (505)
+|+++..... .++++.+.+.++- |+.++|..||-....+
T Consensus 77 vvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~~ivvtNPvd~~t 130 (148)
T d1ldna1 77 LVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVDILT 130 (148)
T ss_dssp EEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHHHH
T ss_pred eEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhC-CCceEEEecCccHHHH
Confidence 9999864321 2445556676664 5668888877544333
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.10 E-value=3.8e-06 Score=73.63 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=75.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC-CCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK-AGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp-~~~~ 85 (505)
.||.|||.|+.|..=++...+.|-.|+++|++.++.+++....... -.....+.+.+.+.++.+|+||-++- ++..
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~---~~~~~~~~~~l~~~~~~aDivI~aalipG~~ 109 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR---VELLYSNSAEIETAVAEADLLIGAVLVPGRR 109 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG---SEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc---ceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence 5899999999999999999999999999999999998887765432 12334455555555666999999873 2222
Q ss_pred HHHHH-HHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTI-AALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~ 109 (505)
...++ ++.+..+++|.+|||.+-.
T Consensus 110 aP~lIt~~mv~~Mk~GSVIVDvaid 134 (168)
T d1pjca1 110 APILVPASLVEQMRTGSVIVDVAVD 134 (168)
T ss_dssp CCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred cCeeecHHHHhhcCCCcEEEEeecC
Confidence 22233 6778889999999998754
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.09 E-value=1e-05 Score=71.06 Aligned_cols=112 Identities=13% Similarity=0.035 Sum_probs=76.9
Q ss_pred CcEEEEcccHHHHH-HHHHHHhC-CCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQN-LALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~-lA~~La~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+||||||+|.||.. ....|.+. +.++.++|+++++.+.+.+.... ...+++.+++++. ..|+|++++|+..
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~--~iD~V~I~tp~~~ 74 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRV-----SATCTDYRDVLQY--GVDAVMIHAATDV 74 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTC-----CCCCSSTTGGGGG--CCSEEEECSCGGG
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccc-----ccccccHHHhccc--ccceecccccccc
Confidence 58999999999976 45566555 56888999999999888775422 2346788888763 4899999999976
Q ss_pred hHHHHHHHHHhcCCCCcEEEec-CCCCchhHHHHHHHHHHCCCeE
Q 010637 85 PVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
..+-+...+... -.++++- -.....+.+++.+...++|..+
T Consensus 75 H~~~~~~al~~g---k~V~~EKP~~~~~~e~~~l~~~a~~~~~~~ 116 (167)
T d1xeaa1 75 HSTLAAFFLHLG---IPTFVDKPLAASAQECENLYELAEKHHQPL 116 (167)
T ss_dssp HHHHHHHHHHTT---CCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred cccccccccccc---cccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 555444333321 2366653 1233456777777777777654
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.09 E-value=2.7e-05 Score=69.26 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=76.9
Q ss_pred CcEEEEcccHHHHH-HHHHHHhCC--CcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQN-LALNVAEKG--FPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~-lA~~La~~G--~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.||||||+|.||.. ....+.+.+ ++|. ++|+++++.+.+.+.... ...+++++|+++. ...|+|++++|+
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~-----~~~~~~~~ell~~-~~id~v~I~tp~ 77 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN-----PAVFDSYEELLES-GLVDAVDLTLPV 77 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS-----CEEESCHHHHHHS-SCCSEEEECCCG
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccc-----cceeeeeeccccc-cccceeeccccc
Confidence 58999999999987 466776644 4554 789999999888775432 3568999999875 347999999999
Q ss_pred CchHHHHHHHHHhcCCCC-cEEEec-CCCCchhHHHHHHHHHHCCCeE
Q 010637 83 GSPVDQTIAALSEHMSPG-DCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g-~iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
....+ ++..++. .| .++++- -+....+..++.+..++.+..+
T Consensus 78 ~~h~~-~~~~al~---~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~ 121 (181)
T d1zh8a1 78 ELNLP-FIEKALR---KGVHVICEKPISTDVETGKKVVELSEKSEKTV 121 (181)
T ss_dssp GGHHH-HHHHHHH---TTCEEEEESSSSSSHHHHHHHHHHHHHCSSCE
T ss_pred ccccc-ccccccc---cchhhhcCCCCcCCHHHHHHHHHHHHHhCCeE
Confidence 75543 4344333 33 466653 2234556667777777776543
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.04 E-value=2e-05 Score=68.39 Aligned_cols=107 Identities=10% Similarity=0.137 Sum_probs=70.3
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc----cC-CCCeeeeCCHHHHHhhcCCCcEEE
Q 010637 4 SALSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR----EG-QLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 4 ~~~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~----~g-~~~i~~~~s~~e~v~~l~~advIi 77 (505)
.+.+||+|||+|.+|..+|..|+..++ ++.++|+++++++.......+ .+ ...+....+.++..++ +|+|+
T Consensus 5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---adiVv 81 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG---ADCVI 81 (154)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT---CSEEE
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcC---CCeEE
Confidence 345789999999999999999998886 899999998765543321100 00 0134556667766666 99999
Q ss_pred EEcCCCc--------------------hHHHHHHHHHhcCCCCcEEEecCCCCchhH
Q 010637 78 ILVKAGS--------------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 78 l~vp~~~--------------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (505)
++..... .++++++.+.++- ++.+++..||-....+
T Consensus 82 itag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~-p~aiviivsNPvd~lt 137 (154)
T d1pzga1 82 VTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCMV 137 (154)
T ss_dssp ECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHH
T ss_pred EecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcC-CCcEEEEeCCcHHHHH
Confidence 9873210 2444455665544 6678888877543333
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.02 E-value=5.7e-06 Score=74.98 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=67.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC------CcEEEEeCChH-HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG------FPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G------~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
++|+|||.|.-|.+-|+||.+.| ..|.+-=|... ..+...+.+-..- +. ...+.+|+++. +|+|++.
T Consensus 45 KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~--~~-~v~~v~EAv~~---ADiVmiL 118 (226)
T d1qmga2 45 KQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEE--NG-TLGDMWETISG---SDLVLLL 118 (226)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGG--GT-CEEEHHHHHHT---CSEEEEC
T ss_pred CEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccC--CC-cccCHHHHHhh---CCEEEEe
Confidence 57999999999999999999955 56776654442 3344444432100 00 13477888887 9999999
Q ss_pred cCCCchHHHHHHHHHhcCCCCcEEEec
Q 010637 80 VKAGSPVDQTIAALSEHMSPGDCIIDG 106 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~ 106 (505)
+|+. .-.++.+++.|+|++|+.+.-.
T Consensus 119 lPDe-~Q~~vy~~I~p~Lk~G~~L~Fa 144 (226)
T d1qmga2 119 ISDS-AQADNYEKVFSHMKPNSILGLS 144 (226)
T ss_dssp SCHH-HHHHHHHHHHHHSCTTCEEEES
T ss_pred cchH-HHHHHHHHHHHhcCCCceeeec
Confidence 9995 5566788999999999988764
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.99 E-value=1.3e-05 Score=73.94 Aligned_cols=117 Identities=11% Similarity=0.041 Sum_probs=78.3
Q ss_pred CcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgIIGlG~MG~~-lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
-+|||||+|.||.. +...+... +++|. ++|+++++.+.+.+...... .++..++|.+++++. ...|+|++++|+.
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~-~~~~~~~d~~ell~~-~~iD~V~I~tp~~ 111 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDP-RKIYDYSNFDKIAKD-PKIDAVYIILPNS 111 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCG-GGEECSSSGGGGGGC-TTCCEEEECSCGG
T ss_pred EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhcccc-ccccccCchhhhccc-ccceeeeeccchh
Confidence 47999999999975 55555554 56665 88999999998877532110 024557889998864 3479999999998
Q ss_pred chHHHHHHHHHhcCCCCcEEEec-CCCCchhHHHHHHHHHHCCCeE
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
...+-++..+.. .-.++++- -+..+.+..++.+..++.++.+
T Consensus 112 ~H~~~~~~al~~---gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~ 154 (221)
T d1h6da1 112 LHAEFAIRAFKA---GKHVMCEKPMATSVADCQRMIDAAKAANKKL 154 (221)
T ss_dssp GHHHHHHHHHHT---TCEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHhhhc---chhhhcCCCccCCHHHHHHHHHHHHhcCCcE
Confidence 665555444432 12466663 2234566777777777766654
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.97 E-value=2.9e-05 Score=66.44 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=64.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHH----Hhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETL----DRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~----~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|||+|||+|.+|.++|..|+.+|. ++.++|+++++++... .... .....++....+.+++.. +|+|+++
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~----adiVvit 76 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKG----SEIIVVT 76 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTT----CSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhcc----ccEEEEe
Confidence 699999999999999999998874 7999999998754322 1110 000013555667665443 8999987
Q ss_pred cCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
...+. .++++.+.+.++ .+..+++..||-
T Consensus 77 ag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvtNP 120 (142)
T d1ojua1 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNP 120 (142)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSS
T ss_pred ccccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEecCC
Confidence 63211 233333455554 467889988884
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.95 E-value=3.1e-05 Score=66.19 Aligned_cols=99 Identities=19% Similarity=0.138 Sum_probs=64.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChHHHHHHHHhh----cccC-CCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRA----HREG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~----~~~g-~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|||+|||+|.+|.++|..|+..| .++.++|+++++.+...... .... ..++..+++.+++.+ +|+|+++
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~d----advvvit 76 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTAN----SDIVIIT 76 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTT----CSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcC----CeEEEEE
Confidence 68999999999999999999988 48999999987754332111 0000 012444556555433 9999998
Q ss_pred cCC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 80 VKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.-. +. .++++.+.+.++- |+.+++..||-.
T Consensus 77 ag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPv 121 (142)
T d1guza1 77 AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPL 121 (142)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSH
T ss_pred EecCCCCCCchHHHHHHHHHHHHHHHHHhhccC-CCeEEEEecCCh
Confidence 621 11 1344445666654 677888887743
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=1.9e-05 Score=68.75 Aligned_cols=90 Identities=10% Similarity=-0.024 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++++|+|.|.+|+.+|..+...|-+|.+||++|-+.-+..-.+ +. ..+.++++.. +|+|+.++.....+
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG-------~~-v~~~~~a~~~---adivvtaTGn~~vI 93 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEG-------YE-VTTMDEACQE---GNIFVTTTGCIDII 93 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHTTT---CSEEEECSSCSCSB
T ss_pred CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCc-------eE-eeehhhhhhh---ccEEEecCCCccch
Confidence 4799999999999999999999999999999996643333322 33 4478888776 99998887653222
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
. .+-.+.+++|.|+.+.+...
T Consensus 94 ~---~eh~~~MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 94 L---GRHFEQMKDDAIVCNIGHFD 114 (163)
T ss_dssp C---HHHHTTCCTTEEEEECSSST
T ss_pred h---HHHHHhccCCeEEEEecccc
Confidence 1 45567799999999976553
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.90 E-value=9.3e-05 Score=63.21 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=65.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHH----HHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDET----LDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l----~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.||+|||+|.+|..+|..|+.+|. ++.++|+++++++.. .......+...+...++.+++.+ +|+|+++.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~d----aDvVVita 77 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRD----ADMVVITA 77 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTT----CSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhC----CcEEEEec
Confidence 489999999999999999999886 899999999876432 21111110013444556655333 99999987
Q ss_pred CCC----c-----------hHHHHHHHHHhcCCCCcEEEecCCCCchhH
Q 010637 81 KAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 81 p~~----~-----------~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (505)
-.. . .++++..++.++ .++.++|..||-....+
T Consensus 78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~-~p~ai~ivvtNPvDvmt 125 (143)
T d1llda1 78 GPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIAT 125 (143)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHH
T ss_pred ccccCCCCchhhhhhhhHHHHHHHHHHHHhh-CCCeEEEEeCCchHHHH
Confidence 321 1 233334555555 46677888877543333
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.85 E-value=7e-05 Score=63.79 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=62.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhh----cccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRA----HREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~----~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|||+|||+|.+|..+|..|+.++. ++.++|+++++++...... .... .......+.+++ + .+|+|+++.
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~-~~~~~~~~~~~~-~---~adivvita 75 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTR-RANIYAGDYADL-K---GSDVVIVAA 75 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSC-CCEEEECCGGGG-T---TCSEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccc-cccccCCcHHHh-c---CCCEEEEec
Confidence 699999999999999999998874 8999999998765433211 1110 012233444443 3 399999986
Q ss_pred CC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
-. +. .++++.+.+.++- |+.+++..||-.
T Consensus 76 g~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~-p~aivivvtNPv 119 (140)
T d1a5za1 76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPV 119 (140)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred ccccCCCcchhhhhccccchHHHHHHHHHhcC-CCcEEEEeCCcH
Confidence 32 11 1333345555544 677888887754
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.83 E-value=3.5e-05 Score=69.79 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=78.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|+|.|+|.+|..+|..|.+.|.+|+++|.+++++......+. . .-+++++... .||+++-|-..+...
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~-------~-~~~~~~~~~~--~~DI~iPcA~~~~I~ 97 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGH-------T-AVALEDVLST--PCDVFAPCAMGGVIT 97 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-------E-ECCGGGGGGC--CCSEEEECSCSCCBC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcc-------c-ccCccccccc--cceeeeccccccccc
Confidence 57999999999999999999999999999999998887765432 2 2355666553 389888765554333
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.+.++. + +-++|+...|... +.+...+.+.++|+.|+.
T Consensus 98 ~~~a~~----i-~ak~i~e~AN~p~-~~~~~~~~L~~rgI~~iP 135 (201)
T d1c1da1 98 TEVART----L-DCSVVAGAANNVI-ADEAASDILHARGILYAP 135 (201)
T ss_dssp HHHHHH----C-CCSEECCSCTTCB-CSHHHHHHHHHTTCEECC
T ss_pred HHHHhh----h-hhheeeccCCCCc-chhhHHHHhcccceEEEe
Confidence 333333 4 3478888888643 344566788899998863
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.81 E-value=8.2e-05 Score=63.47 Aligned_cols=99 Identities=17% Similarity=0.140 Sum_probs=65.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc-----ccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-----REGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~-----~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
+||+|||+|.+|.++|..|+.++. ++.++|+++++.+....... .....++..+.+.+++.+ +|+|+++.
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~----advvvita 77 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTAN----SDVIVVTS 77 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTT----CSEEEECC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcC----CCEEEEee
Confidence 589999999999999999998875 89999999887544322110 000014566778877644 89999988
Q ss_pred CCCc---------------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.... .++++++.+.++ .+..+++-.||-.
T Consensus 78 g~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvtNPv 121 (142)
T d1uxja1 78 GAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVNNPL 121 (142)
T ss_dssp SCC---------CHHHHHHHHHHHHHHHGGG-CTTCEEEECSSSH
T ss_pred eccCCcCcchhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeCCch
Confidence 4321 233444566554 4566777776643
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.76 E-value=0.00016 Score=62.90 Aligned_cols=100 Identities=13% Similarity=0.117 Sum_probs=65.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhh---c-ccCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRA---H-REGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~---~-~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
..||+|||+|.+|..+|..|+..|. ++.++|+++++++...... . ..+...+....+.+++.+ +|+|+++
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~----adiVVit 95 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTAN----SKIVVVT 95 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTT----CSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhccc----ccEEEEe
Confidence 4589999999999999999999997 8999999988764332111 0 000002334455555433 9999997
Q ss_pred cCCC----c-----------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 80 VKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.-.. . .+++++.++.+. .++.++|..||-.
T Consensus 96 Ag~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvtNPv 140 (160)
T d1i0za1 96 AGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNPV 140 (160)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred cCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCch
Confidence 6221 1 234444556554 4677888887754
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.76 E-value=0.00016 Score=61.73 Aligned_cols=112 Identities=15% Similarity=0.111 Sum_probs=68.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcccCCCC---eeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLP---LTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~---i~~~~s~~e~v~~l~~advIil~v 80 (505)
.||+|||+ |.+|.++|..|+..|. ++.++|.++.+.+.+--..... ..+ .....+..+..+. +|+||++.
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~-~~~~~~~~~~~~~~~~~~~---aDivVita 76 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET-RATVKGYLGPEQLPDCLKG---CDVVVIPA 76 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSS-SCEEEEEESGGGHHHHHTT---CSEEEECC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhh-hcCCCeEEcCCChHHHhCC---CCEEEECC
Confidence 38999995 9999999999999886 6999999987654432221110 001 1122344444444 99999986
Q ss_pred CCC---------------chHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHH
Q 010637 81 KAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ 123 (505)
Q Consensus 81 p~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~ 123 (505)
... ..++++++.+.++ .+..+|+..||-....+.-..+.+++
T Consensus 77 g~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvD~~t~~~~~~~kk 133 (144)
T d1mlda1 77 GVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVNSTIPITAEVFKK 133 (144)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhHHHHHHHHHH
Confidence 321 1345556677766 56778888877543333333444443
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.69 E-value=0.00015 Score=61.74 Aligned_cols=99 Identities=10% Similarity=0.077 Sum_probs=57.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcccC-CC-Ceee-eCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREG-QL-PLTG-HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~g-~~-~i~~-~~s~~e~v~~l~~advIil~vp 81 (505)
+||+|||+|.+|..+|..|+.+|. ++.++|+++++++.......+.. .. .... ..+.+++ +.+|+|+++..
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~----~~adivvitag 77 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDV----KDCDVIVVTAG 77 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGG----TTCSEEEECCC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHh----CCCceEEEecc
Confidence 589999999999999999999986 89999999986433222111000 00 1222 2344433 34999999853
Q ss_pred CC----c-----------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 82 AG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~----~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.. . .++++.+.+.++- |+.++|..||-.
T Consensus 78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPv 120 (142)
T d1y6ja1 78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNPV 120 (142)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSSH
T ss_pred cccCcCcchhHHhhHHHHHHHHHHHHhhccC-CCceEEEecChH
Confidence 22 1 1223334555544 566788787743
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.65 E-value=0.00027 Score=60.43 Aligned_cols=100 Identities=15% Similarity=0.043 Sum_probs=64.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhh----cccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRA----HREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~----~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
+||+|||+|.+|..+|..|+..|. ++.++|+++++++...... ............+.+++.. +|+||++.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~----adiVVita 77 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALAD----ADVVISTL 77 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTT----CSEEEECC
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhcc----ccEEEEec
Confidence 589999999999999999998874 8999999998764332211 1110001234456555433 99999985
Q ss_pred CCCc-------------------hHHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 81 KAGS-------------------PVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 81 p~~~-------------------~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
.... .++++...+.+ ..++.++|..||-..
T Consensus 78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~-~~p~aivivvtNPvD 126 (146)
T d1hyha1 78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKE-SGFHGVLVVISNPVD 126 (146)
T ss_dssp SCGGGTC-------CTTHHHHHHHHHHHHHHHHH-TTCCSEEEECSSSHH
T ss_pred cccccccccCCccHHHHHHHHHHHHHHHHHHHhh-cCCCeEEEEecCcHH
Confidence 4211 12333345554 347788888888543
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.65 E-value=1.3e-05 Score=70.63 Aligned_cols=85 Identities=9% Similarity=0.252 Sum_probs=59.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
+||||||+|.||+.++..|.+. ++++. ++|++++... .. +.....+.+++.+. +|+|++++|+..
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~-------~~---~~~~~~~~~~~~~~---~D~Vvi~tp~~~ 70 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT-------KT---PVFDVADVDKHADD---VDVLFLCMGSAT 70 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS-------SS---CEEEGGGGGGTTTT---CSEEEECSCTTT
T ss_pred ceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc-------cc---ccccchhhhhhccc---cceEEEeCCCcc
Confidence 5899999999999999999875 56654 7898865311 11 24455555555554 999999999975
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st 108 (505)
..+ -..+.|..|.-+|++..
T Consensus 71 h~~----~a~~aL~aG~~vv~~~~ 90 (170)
T d1f06a1 71 DIP----EQAPKFAQFACTVDTYD 90 (170)
T ss_dssp HHH----HHHHHHTTTSEEECCCC
T ss_pred cHH----HHHHHHHCCCcEEEecC
Confidence 433 33445667887776543
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.62 E-value=7.6e-05 Score=64.81 Aligned_cols=96 Identities=14% Similarity=0.110 Sum_probs=60.5
Q ss_pred CCCcEEEEcccHHHHH-HHHHHHhCC-CcE-EEEeCChHHH-HHHHHhhcccCCCCee-eeCCHHHHHhhc--CCCcEEE
Q 010637 5 ALSRIGLAGLAVMGQN-LALNVAEKG-FPI-SVYNRTTSKV-DETLDRAHREGQLPLT-GHYTPRDFVLSI--QRPRSVI 77 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~-lA~~La~~G-~~V-~v~dr~~~~~-~~l~~~~~~~g~~~i~-~~~s~~e~v~~l--~~advIi 77 (505)
.++||||||+|.+|.. +...|.... .++ .+.+|+++.. ..+.+.. ++. ...+.+++.+.. .+.|+|+
T Consensus 3 kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~------~i~~~~~~~d~l~~~~~~~~iDiVf 76 (157)
T d1nvmb1 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM------GVTTTYAGVEGLIKLPEFADIDFVF 76 (157)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT------TCCEESSHHHHHHHSGGGGGEEEEE
T ss_pred CCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhc------CCcccccceeeeeecccccccCEEE
Confidence 3468999999999986 555665543 354 4668886532 2333322 233 344566665432 2478999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+++|++..+... .....++.|..+||.|.
T Consensus 77 ~ATpag~h~~~~--~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 77 DATSASAHVQNE--ALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp ECSCHHHHHHHH--HHHHHHCTTCEEEECST
T ss_pred EcCCchhHHHhH--HHHHHHHcCCEEEEccc
Confidence 999987554422 22334678999999987
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.60 E-value=0.00018 Score=62.48 Aligned_cols=99 Identities=17% Similarity=0.129 Sum_probs=63.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHh----hcccCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR----AHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~----~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
..||+|||+|.+|..+|..|+..|. ++.++|+++++++..... ....+........+.+++.+ +|+|+++
T Consensus 19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~----adivvit 94 (159)
T d2ldxa1 19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSAN----SKLVIIT 94 (159)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTT----EEEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhcc----ccEEEEe
Confidence 3589999999999999999999986 799999998876433211 11100002344556655533 8999987
Q ss_pred cCCCc---------------hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..... .++++...+... .++.+++..||-
T Consensus 95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~-~p~~ivivvtNP 138 (159)
T d2ldxa1 95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQN-SPDCKIIVVTNP 138 (159)
T ss_dssp CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHH-STTCEEEECSSS
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHhcc-CCCeEEEEeCCc
Confidence 63211 122222334443 467888888884
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.59 E-value=4.9e-05 Score=67.27 Aligned_cols=98 Identities=15% Similarity=0.185 Sum_probs=70.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee-----------------------eCCH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-----------------------HYTP 63 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-----------------------~~s~ 63 (505)
.+|-|||.|+.|..=++.....|-.|+++|+++++.+++...+... +.. ....
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~----i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKF----ITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEE----CCC-----------------------CCHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcce----EEEeccccccccccccchhhcCHHHHHHHH
Confidence 4799999999999999999999999999999999999888765421 110 0112
Q ss_pred HHHHhhcCCCcEEEEEcCCC-chHHHHH-HHHHhcCCCCcEEEecCC
Q 010637 64 RDFVLSIQRPRSVIILVKAG-SPVDQTI-AALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 64 ~e~v~~l~~advIil~vp~~-~~v~~vl-~~l~~~l~~g~iIId~st 108 (505)
+.+.+.++++|+||.++--+ .....++ +++...+++|.+|||.+-
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvai 152 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAV 152 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEee
Confidence 23444567799999876221 1112223 677888999999999864
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.56 E-value=0.00028 Score=60.63 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=66.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc----cC-CCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR----EG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~----~g-~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
.+||+|||+|.+|..+|..|...+. ++.+||+++++.+.......+ .+ ...+....+.+++.. +|+|+++
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~----advvvit 78 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAG----ADVVIVT 78 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTT----CSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCC----CcEEEEe
Confidence 3689999999999999998888774 799999998775443221100 00 012444455555533 9999998
Q ss_pred cCCCc--------------------hHHHHHHHHHhcCCCCcEEEecCCCCchhH
Q 010637 80 VKAGS--------------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (505)
Q Consensus 80 vp~~~--------------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (505)
.-... .++++++.+.++ .++.+++..||-....+
T Consensus 79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvtNPvD~~t 132 (150)
T d1t2da1 79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVTNPVDVMV 132 (150)
T ss_dssp CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSHHHHH
T ss_pred cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchHHHH
Confidence 74221 233444555554 46788888888543333
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=97.56 E-value=0.00041 Score=60.90 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=51.0
Q ss_pred CCcEEEEcccHHHHHHHH--HHHhC----CCcEEEEeCChHHHHHHHHhh----ccc-CCCCeeeeCCHHHHHhhcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLAL--NVAEK----GFPISVYNRTTSKVDETLDRA----HRE-GQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~--~La~~----G~~V~v~dr~~~~~~~l~~~~----~~~-g~~~i~~~~s~~e~v~~l~~ad 74 (505)
.|||+|||+|..|..++. .|+.. +.++.++|+++++++...... ... ...++..+++.++.... +|
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~d---ad 78 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID---AD 78 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---CS
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccC---CC
Confidence 369999999999976543 34432 469999999998865432111 000 01257778899988877 99
Q ss_pred EEEEEcCC
Q 010637 75 SVIILVKA 82 (505)
Q Consensus 75 vIil~vp~ 82 (505)
+|+.++..
T Consensus 79 ~Vv~~~~~ 86 (171)
T d1obba1 79 FVINTAMV 86 (171)
T ss_dssp EEEECCCT
T ss_pred eEeeeccc
Confidence 99998654
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=4.7e-05 Score=66.99 Aligned_cols=112 Identities=20% Similarity=0.145 Sum_probs=76.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|-|+|+|-.+++++..|.+.|.+|+++||+.++.+.+.+.....+ .+... +..+.. ...+|+||-++|.+..-
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~--~~~~~-~~~~~~--~~~~dliIN~Tp~G~~~ 93 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG--SIQAL-SMDELE--GHEFDLIINATSSGISG 93 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS--SEEEC-CSGGGT--TCCCSEEEECCSCGGGT
T ss_pred CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc--ccccc-cccccc--ccccceeecccccCccc
Confidence 57999999999999999999999999999999999998887644321 23322 333321 23489999999887421
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
+ ...--...+.++.+++|.--... .| .+.+..+++|.
T Consensus 94 ~-~~~~~~~~~~~~~~v~D~vY~P~-~T-~ll~~A~~~G~ 130 (170)
T d1nyta1 94 D-IPAIPSSLIHPGIYCYDMFYQKG-KT-PFLAWCEQRGS 130 (170)
T ss_dssp C-CCCCCGGGCCTTCEEEESCCCSS-CC-HHHHHHHHTTC
T ss_pred C-CCCCcHHHhccCcEEEEeecCCC-CC-HHHHHHHHcCC
Confidence 1 11001234678899999865443 33 34455566665
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.54 E-value=8.4e-05 Score=61.16 Aligned_cols=104 Identities=19% Similarity=0.161 Sum_probs=78.6
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGl----G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
++|+|||+ +..|..+.++|.+.||+|+..|.+.+.+ . +.....+++|+-+. +|++++++|+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i---------~---G~~~y~sl~~lp~~---~D~vvi~vp~ 66 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI---------E---GLKCYRSVRELPKD---VDVIVFVVPP 66 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE---------T---TEECBSSGGGSCTT---CCEEEECSCH
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc---------c---Cccccccchhcccc---ceEEEEEeCH
Confidence 46999994 7899999999999999988887654321 1 46778898888776 8999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
. .+.++++++... ....+++..++.. +++.+.+++.|+.+++.
T Consensus 67 ~-~~~~~l~~~~~~-g~k~v~~~~g~~~----~~~~~~a~~~gi~vigp 109 (116)
T d1y81a1 67 K-VGLQVAKEAVEA-GFKKLWFQPGAES----EEIRRFLEKAGVEYSFG 109 (116)
T ss_dssp H-HHHHHHHHHHHT-TCCEEEECTTSCC----HHHHHHHHHHTCEEECS
T ss_pred H-HHHHHHHHHHhc-CCceEEeccchhh----HHHHHHHHHcCCEEEcC
Confidence 4 778888777653 3446777666543 34567777889988874
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.50 E-value=0.00043 Score=63.92 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=74.6
Q ss_pred CCcEEEEcccHHH----HHHHHHHHhC--CCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 6 LSRIGLAGLAVMG----QNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 6 ~~~IgIIGlG~MG----~~lA~~La~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
.+||||||+|.+| ......+.+. +++|. ++|+++++.+++.+..... ....+++++++.+. ...|+|++
T Consensus 16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~-~~iD~V~i 91 (237)
T d2nvwa1 16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLK---HATGFDSLESFAQY-KDIDMIVV 91 (237)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCT---TCEEESCHHHHHHC-TTCSEEEE
T ss_pred CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccc---cceeecchhhcccc-cccceeec
Confidence 4589999998754 4445556543 56766 7899999998887764321 35667899999875 34789999
Q ss_pred EcCCCchHHHHHHHHHhcC---CCCcEEEecC-CCCchhHHHHHHHHHHCC
Q 010637 79 LVKAGSPVDQTIAALSEHM---SPGDCIIDGG-NEWYLNTERRIHEASQKG 125 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l---~~g~iIId~s-t~~~~~t~~~~~~l~~~g 125 (505)
++|+....+.+...+.... ..-.++++-= .....+.+++.+..++++
T Consensus 92 ~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~~ 142 (237)
T d2nvwa1 92 SVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRA 142 (237)
T ss_dssp CSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCT
T ss_pred cCCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhcC
Confidence 9998766555554444321 1224676631 113345666666655553
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.47 E-value=3.8e-05 Score=67.74 Aligned_cols=113 Identities=21% Similarity=0.157 Sum_probs=72.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|.|+|+|-++++++..|.+.+-+|++++|+.++.+.+.+.....+ ++....... ..+..+|+||-++|.+..
T Consensus 19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~--~~~~~~~~~---~~~~~~diiIN~tp~g~~- 92 (171)
T d1p77a1 19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG--NIQAVSMDS---IPLQTYDLVINATSAGLS- 92 (171)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS--CEEEEEGGG---CCCSCCSEEEECCCC----
T ss_pred CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc--ccchhhhcc---ccccccceeeeccccccc-
Confidence 57999999999999999999988899999999999998877543221 233322221 124458999999998742
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (505)
..........+.++.+++|..=..|..| .+.+..++.|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~D~vy~~p~~T-~~l~~A~~~g~ 131 (171)
T d1p77a1 93 GGTASVDAEILKLGSAFYDMQYAKGTDT-PFIALCKSLGL 131 (171)
T ss_dssp ----CCCHHHHHHCSCEEESCCCTTSCC-HHHHHHHHTTC
T ss_pred ccccchhhhhhcccceeeeeeccCcccH-HHHHHHHHcCC
Confidence 1111111112346778888754444444 34445556665
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.44 E-value=0.0002 Score=61.90 Aligned_cols=90 Identities=10% Similarity=0.002 Sum_probs=70.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
+++.|+|.|..|+++|..+...|-.|+|++++|-+.-+..-.+ ++ ..+.++++.. +|++|.++.....+
T Consensus 24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdG-------f~-v~~~~~a~~~---aDi~vTaTGn~~vI 92 (163)
T d1v8ba1 24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEG-------FN-VVTLDEIVDK---GDFFITCTGNVDVI 92 (163)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTT-------CE-ECCHHHHTTT---CSEEEECCSSSSSB
T ss_pred CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcC-------Cc-cCchhHcccc---CcEEEEcCCCCccc
Confidence 4799999999999999999999999999999996643333322 44 3688888887 99999998775322
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
. .+-...++.|.||.+.+...
T Consensus 93 ~---~~h~~~MKdgaIl~N~GHfd 113 (163)
T d1v8ba1 93 K---LEHLLKMKNNAVVGNIGHFD 113 (163)
T ss_dssp C---HHHHTTCCTTCEEEECSSTT
T ss_pred c---HHHHHHhhCCeEEEeccccc
Confidence 1 44566789999999987654
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.38 E-value=0.00043 Score=59.05 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=30.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChH
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~ 40 (505)
|||+|||+ |.+|.++|..|+..|. ++.++|++++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~ 37 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence 68999995 9999999999999984 8999999864
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=7.6e-05 Score=67.25 Aligned_cols=72 Identities=17% Similarity=0.281 Sum_probs=51.8
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+||.|+| .|.+|+.++..|.++||+|.++.|++++.......+. .+.. ..+.+++.+.++.+|+||.++..
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~-----~~~~gD~~d~~~l~~al~~~d~vi~~~g~ 77 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPA-----HVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCS-----EEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccccccc-----ccccccccchhhHHHHhcCCCEEEEEecc
Confidence 36899999 6999999999999999999999999987543322211 1111 13455555556668988888753
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.26 E-value=0.002 Score=55.69 Aligned_cols=94 Identities=12% Similarity=0.061 Sum_probs=60.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeee----CCHHHHHhhc-----CCCcEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH----YTPRDFVLSI-----QRPRSVI 77 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~----~s~~e~v~~l-----~~advIi 77 (505)
.+|.|+|+|.+|...++.+...|.+|.++++++++.+.+.+.+... .... .+..+..+.+ ..+|+||
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~----~~~~~~~~~~~~~~~~~~~~~~g~g~D~vi 103 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADV----TLVVDPAKEEESSIIERIRSAIGDLPNVTI 103 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSE----EEECCTTTSCHHHHHHHHHHHSSSCCSEEE
T ss_pred CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcE----EEeccccccccchhhhhhhcccccCCceee
Confidence 4699999999999999999999999999999999988777655321 1111 1222332221 2367777
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
.++.... .++.....+.++-.|+-.+.
T Consensus 104 d~~g~~~----~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 104 DCSGNEK----CITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp ECSCCHH----HHHHHHHHSCTTCEEEECSC
T ss_pred ecCCChH----HHHHHHHHHhcCCceEEEec
Confidence 7775532 23333344555555554443
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.23 E-value=0.00024 Score=68.82 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=72.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-C-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK-G-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|.++...+..|... . .+|.+|+|++++.+.+.+..... .+....++++.+.. +|+|+.++++..
T Consensus 126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~---~~~~~~~~~~a~~~---aDiV~taT~s~~ 199 (320)
T d1omoa_ 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDR---GISASVQPAEEASR---CDVLVTTTPSRK 199 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHT---TCCEEECCHHHHTS---SSEEEECCCCSS
T ss_pred cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhc---CCccccchhhhhcc---ccEEEEeccCcc
Confidence 4699999999999999888752 2 47999999999999888765433 35556677777776 999999998875
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
++ ++ ...+++|..|+-.++..|.
T Consensus 200 P~---~~--~~~l~~G~hv~~iGs~~p~ 222 (320)
T d1omoa_ 200 PV---VK--AEWVEEGTHINAIGADGPG 222 (320)
T ss_dssp CC---BC--GGGCCTTCEEEECSCCSTT
T ss_pred cc---cc--hhhcCCCCeEeecCCcccc
Confidence 53 21 1357899999888876553
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=0.0017 Score=55.12 Aligned_cols=99 Identities=19% Similarity=0.259 Sum_probs=59.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHh-C--CCcEEEEeCChHHHHHHHHhhcccCCCC---eeeeCCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAG-LAVMGQNLALNVAE-K--GFPISVYNRTTSKVDETLDRAHREGQLP---LTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~-~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~---i~~~~s~~e~v~~l~~advIil~ 79 (505)
|||+||| .|.+|.++|..|+. . +.++.++|..+.......+.....-... +...++.+++ +. +|+||++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~-~~---aDvvvit 76 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPAL-EG---ADVVLIS 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHH-TT---CSEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCcccc-CC---CCEEEEC
Confidence 6999999 59999999998864 3 4689999987533222222110000001 1123344443 33 9999998
Q ss_pred cCCC---------------chHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
--.. ..++++.+++.++- |+.+||..||-.
T Consensus 77 aG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~-p~aivivvtNPv 121 (145)
T d2cmda1 77 AGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPV 121 (145)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSH
T ss_pred CCccCCCCcchhhHHHHHHHHHHHHHHHHHhhC-CCcEEEEccCCc
Confidence 6321 13455556676654 667788887754
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.18 E-value=0.0036 Score=52.11 Aligned_cols=103 Identities=14% Similarity=0.166 Sum_probs=79.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCcccHH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll~~~~ 405 (505)
+.|+-+|.++|.+.++.+++++|++.+..++. +|.+.+.++.+.|. -+|..++.....+-+++. ++.
T Consensus 3 G~g~~~Kl~nN~l~~~~~~~~aEal~la~~~G------id~~~~~~~l~~~~-~~S~~~~~~~~~~~~~~~------~~~ 69 (133)
T d1vpda1 3 GAGNVTKLANQVIVALNIAAMSEALTLATKAG------VNPDLVYQAIRGGL-AGSTVLDAKAPMVMDRNF------KPG 69 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------CCHHHHHHHHTTST-TCCHHHHHHHHHHHTTCC------CCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CCHHHHHHHHHhcc-ccchhhhhccchhhhccC------CCC
Confidence 46788999999999999999999999988643 99999999999874 578888775444433321 122
Q ss_pred HHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010637 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~ 443 (505)
|. +.-...+++-+...|-+.|+|+|....+..+|+.
T Consensus 70 f~--~~l~~KDl~l~~~~a~~~~~~~p~~~~~~~~~~~ 105 (133)
T d1vpda1 70 FR--IDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQA 105 (133)
T ss_dssp SB--HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred ch--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 32 2234467788899999999999999999997764
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.18 E-value=0.00039 Score=58.34 Aligned_cols=107 Identities=17% Similarity=0.032 Sum_probs=77.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHHHHhcCCCCCCCc---c
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLV---V 402 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~~~~~~~~~~~ll---~ 402 (505)
+.|+.+|.++|.+.++.+++++|++.+.+++. +|.+.+.++-+.| --+|+.++........-+. .++ .
T Consensus 3 GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~G------ld~~~~~eil~~~-~g~s~~~~~~~~~~~~~~~--~~~~~~~ 73 (134)
T d3cuma1 3 GAGQVAKVCNNQLLAVLMIGTAEAMALGVANG------LEAKVLAEIMRRS-SGGNWALEVYNPWPGVMEN--APASRDY 73 (134)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------CCHHHHHHHHHTS-TTCCHHHHHCCCSTTSSTT--SGGGGTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHhc-ccchhhhhhhhhhhhccch--hhhcCCC
Confidence 47889999999999999999999999998654 9999999999887 3578887753211111110 011 0
Q ss_pred cHHHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010637 403 DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (505)
Q Consensus 403 ~~~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~~ 443 (505)
++.| .+.-...+++-+...|-+.|+|+|....+...|..
T Consensus 74 ~~~f--~~~l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~~ 112 (134)
T d3cuma1 74 SGGF--MAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRL 112 (134)
T ss_dssp CSSS--BHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred CCCc--chHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 1112 12234566788899999999999999999987653
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.0019 Score=54.95 Aligned_cols=117 Identities=11% Similarity=0.159 Sum_probs=69.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCC-eeeeCCHHHHHh--hcCCCcEEEEEcCCCc
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLP-LTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~-i~~~~s~~e~v~--~l~~advIil~vp~~~ 84 (505)
.|-|+|.|.+|..++..|.+.|++|++.+.++++.....+.....| .. +.+..+-.++.+ .++++|.||++++++.
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~-~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~ 83 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDN-ADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA 83 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTT-CEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCC-cEEEEccCcchHHHHHhccccCCEEEEccccHH
Confidence 5889999999999999999999999999999876544433321111 01 122223334433 3667999999998864
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
..-.++..+....+.-.+|+-..+. .. ...+...|+.++=.
T Consensus 84 ~n~~~~~~~r~~~~~~~iia~~~~~--~~----~~~l~~~Gad~vi~ 124 (153)
T d1id1a_ 84 DNAFVVLSAKDMSSDVKTVLAVSDS--KN----LNKIKMVHPDIILS 124 (153)
T ss_dssp HHHHHHHHHHHHTSSSCEEEECSSG--GG----HHHHHTTCCSEEEC
T ss_pred HHHHHHHHHHHhCCCCceEEEEcCH--HH----HHHHHHCCCCEEEC
Confidence 3322222222222333566655442 22 23345567765533
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.00033 Score=62.00 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=76.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHh---hcccCCC--CeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDR---AHREGQL--PLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~---~~~~g~~--~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.+|.|||+|-+|++++..|.+.|. +++++||++++.+++... ....... .+....+.+++.+.+..+|+||-++
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~T 98 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGT 98 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceecccc
Confidence 579999999999999999999987 689999998776654321 1100000 1122334455555555599999999
Q ss_pred CCCchH--HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 81 KAGSPV--DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 81 p~~~~v--~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
|.+..- .+.+..-...++++.+++|..-. |..| .+.+..+..|..+++
T Consensus 99 p~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~-p~~T-~ll~~a~~~g~~~i~ 148 (182)
T d1vi2a1 99 KVGMKPLENESLVNDISLLHPGLLVTECVYN-PHMT-KLLQQAQQAGCKTID 148 (182)
T ss_dssp STTSTTSCSCCSCCCGGGSCTTCEEEECCCS-SSSC-HHHHHHHTTTCEEEC
T ss_pred CCccccccchhhhhHHHhhhcchhhHHhhcC-cccc-HHHHHHHHCcCeEec
Confidence 976321 01100012347788999999643 3334 344555667777654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.0022 Score=55.55 Aligned_cols=116 Identities=14% Similarity=0.161 Sum_probs=75.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhc-----CCCcEEEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSI-----QRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l-----~~advIil 78 (505)
.+|.|+|+|.+|...+..+...|. +|.+.|+++++.+...+.+... +.. ..++.+..+.+ ..+|+||.
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~----~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADL----VLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE----EEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcc----cccccccccccccccccccCCCCceEEEe
Confidence 369999999999999999999998 6999999999998877665431 111 23444443322 24799999
Q ss_pred EcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
++.... .++.....+.++-.++-.+........... .+-.+++.+++.
T Consensus 104 ~~G~~~----~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~-~~~~k~l~i~Gs 151 (171)
T d1pl8a2 104 CTGAEA----SIQAGIYATRSGGTLVLVGLGSEMTTVPLL-HAAIREVDIKGV 151 (171)
T ss_dssp CSCCHH----HHHHHHHHSCTTCEEEECSCCCSCCCCCHH-HHHHTTCEEEEC
T ss_pred ccCCch----hHHHHHHHhcCCCEEEEEecCCCCCccCHH-HHHHCCcEEEEE
Confidence 997743 344455556666666655554332222222 233356777653
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.11 E-value=0.00042 Score=58.67 Aligned_cols=104 Identities=13% Similarity=0.051 Sum_probs=78.2
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGl----G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|+|||+ +..|..++.+|.++||+|+..|...+. -. +.....+++|+-.. .|++++++|+
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~---------i~---G~~~~~sl~dlp~~---iD~v~i~vp~ 84 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEE---------VL---GRKCYPSVLDIPDK---IEVVDLFVKP 84 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE---------ET---TEECBSSGGGCSSC---CSEEEECSCH
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccc---------cC---CCcccccccccCcc---ceEEEEEeCH
Confidence 46999996 679999999999999998888765321 11 46778899887765 8999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
+.+.++++++... ....+++..+... ++..+.+.+.|+.+++.
T Consensus 85 -~~~~~~~~e~~~~-g~k~v~~~~G~~~----ee~~~~a~~~gi~vig~ 127 (139)
T d2d59a1 85 -KLTMEYVEQAIKK-GAKVVWFQYNTYN----REASKKADEAGLIIVAN 127 (139)
T ss_dssp -HHHHHHHHHHHHH-TCSEEEECTTCCC----HHHHHHHHHTTCEEEES
T ss_pred -HHHHHHHHHHHHh-CCCEEEEeccccC----HHHHHHHHHCCCEEEcC
Confidence 4788888887764 3445666655543 34556677889988863
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.10 E-value=0.00066 Score=62.28 Aligned_cols=109 Identities=13% Similarity=0.147 Sum_probs=80.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++|.|-|.|.+|..+|+.|.+.|..|.+.|.++..++.+..... .. ..+++++... .||+++-|--.+...
T Consensus 40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g------~~-~~~~~~~~~~--~cDIl~PcA~~~~I~ 110 (230)
T d1leha1 40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEG------AD-AVAPNAIYGV--TCDIFAPCALGAVLN 110 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC------CE-ECCGGGTTTC--CCSEEEECSCSCCBS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcC------Cc-ccCCcccccc--cccEecccccccccC
Confidence 57999999999999999999999999999999999888776542 22 3355555542 489998887665433
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
++.++. +. =++|+...|..+.+. +..+.|.++|+.|+.
T Consensus 111 ~~~~~~----l~-ak~Ive~ANn~~t~~-ea~~~L~~rGI~~iP 148 (230)
T d1leha1 111 DFTIPQ----LK-AKVIAGSADNQLKDP-RHGKYLHELGIVYAP 148 (230)
T ss_dssp TTHHHH----CC-CSEECCSCSCCBSSH-HHHHHHHHHTCEECC
T ss_pred hHHhhc----cC-ccEEEecccCCCCCc-hHHHHHHhhCcEEEe
Confidence 334343 32 368888887766443 556778899998764
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.09 E-value=0.0022 Score=53.24 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=63.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEE-EeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v-~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
|||+|+|+ |+||+.++..+.+.|+++.. +|++.. +.+..+|+||=...+.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~---------------------------~~~~~~DVvIDFS~p~- 52 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV---------------------------EELDSPDVVIDFSSPE- 52 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE---------------------------EECSCCSEEEECSCGG-
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH---------------------------HHhccCCEEEEecCHH-
Confidence 68999996 99999999999999998764 343311 1122389998877663
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGV 133 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pv 133 (505)
.+.+.++.... .+.-+|-+||++..+..+..+.+.+ .+..+-+|.
T Consensus 53 ~~~~~l~~~~~---~~~p~ViGTTG~~~~~~~~i~~~ak-~~pv~~a~N 97 (128)
T d1vm6a3 53 ALPKTVDLCKK---YRAGLVLGTTALKEEHLQMLRELSK-EVPVVQAYS 97 (128)
T ss_dssp GHHHHHHHHHH---HTCEEEECCCSCCHHHHHHHHHHTT-TSEEEECSC
T ss_pred HHHHHHHHHHh---cCCCEEEEcCCCCHHHHHHHHHHHh-hCCEEeeec
Confidence 56666655443 4567888999887666665555543 344455553
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.00026 Score=55.54 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=31.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.++|.|+|+|..|.+.|+.|.+.|++|++||.+..
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 45799999999999999999999999999997653
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.00 E-value=0.00046 Score=57.65 Aligned_cols=109 Identities=19% Similarity=0.149 Sum_probs=73.1
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGL----AVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGl----G~MG~~lA~~La~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+|+|||+ |.+|..+.++|.+.| ++|+..|.+.+.+ . +...+.|+.|+-.. +|++++++|
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i---------~---G~~~y~sl~dlp~~---vDlvvi~vp 73 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV---------Q---GVKAYKSVKDIPDE---IDLAIIVVP 73 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE---------T---TEECBSSTTSCSSC---CSEEEECSC
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc---------C---CeEeecchhhcCCC---CceEEEecC
Confidence 46999997 899999999998876 6888888764321 1 46778888887665 899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCC-chhH----HHHHHHHHHCCCeEEeC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW-YLNT----ERRIHEASQKGLLYLGM 131 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~-~~~t----~~~~~~l~~~gi~~i~~ 131 (505)
+ ..+.++++++...--+..+++..+-.. ...- +++.+...+.|+.+++.
T Consensus 74 ~-~~~~~~~~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~GP 127 (129)
T d2csua1 74 K-RFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGP 127 (129)
T ss_dssp H-HHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECS
T ss_pred h-HHhHHHHHHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCEEeCC
Confidence 8 478888888776443433443322111 1111 22334445568887753
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.92 E-value=0.00047 Score=60.24 Aligned_cols=112 Identities=12% Similarity=0.061 Sum_probs=67.6
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 4 SALSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 4 ~~~~~IgIIGlG~MG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
+.+++|||||+|.||...+..|.+.. ..+.+++....+ +.... ......+.+|+.+. ...|+|++++|
T Consensus 5 ~~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~e~l~~-~~iD~V~I~tp 74 (172)
T d1lc0a1 5 SGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR-----ELGSL----DEVRQISLEDALRS-QEIDVAYICSE 74 (172)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS-----CCCEE----TTEEBCCHHHHHHC-SSEEEEEECSC
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH-----HHHHh----hccCcCCHHHHHhC-CCcchhhhccc
Confidence 34568999999999999988887542 234444433221 01111 11234588888874 34799999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEec-CCCCchhHHHHHHHHHHCCCeE
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (505)
+....+-+ ...++. .-.++++- -.....+.+++.+...+.|..+
T Consensus 75 ~~~H~~~~-~~al~~--gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~ 119 (172)
T d1lc0a1 75 SSSHEDYI-RQFLQA--GKHVLVEYPMTLSFAAAQELWELAAQKGRVL 119 (172)
T ss_dssp GGGHHHHH-HHHHHT--TCEEEEESCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred cccccccc-cccccc--chhhhcCCCccccHHHHHHHHHHHHHcCCeE
Confidence 97654433 333332 12466663 1234567777777777777654
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.90 E-value=0.0023 Score=54.78 Aligned_cols=104 Identities=15% Similarity=0.172 Sum_probs=62.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEE--eCChHHHHHHHHhhcccCC---CCeeeeCCHHHHHhhcCCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGF-------PISVY--NRTTSKVDETLDRAHREGQ---LPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~-------~V~v~--dr~~~~~~~l~~~~~~~g~---~~i~~~~s~~e~v~~l~~a 73 (505)
+||+|||+ |.+|.++|..|+..+. ...++ +++.++.+........... .++...++..+..+. +
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---a 81 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD---A 81 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---C
T ss_pred CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccc---c
Confidence 48999996 9999999999998753 12333 3444444443322110000 035566667666665 9
Q ss_pred cEEEEEcC----CCc-----------hHHHHHHHHHhcCCCCcEEEecCCCCchhHH
Q 010637 74 RSVIILVK----AGS-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (505)
Q Consensus 74 dvIil~vp----~~~-----------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~ 115 (505)
|+||++-- ++. .++++...+..+.+++.+|+-.|| |-++.
T Consensus 82 dvViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~ 136 (154)
T d1y7ta1 82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTN 136 (154)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHH
T ss_pred cEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHH
Confidence 99999862 111 233444566666666777777776 44543
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.90 E-value=0.00041 Score=63.29 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=34.1
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 1 m~~~~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
|.|...+||.|||.|.+|.+.|..|+++|++|++++|+.
T Consensus 1 ~~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 1 LMMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CCCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 344445689999999999999999999999999999864
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=96.87 E-value=0.0022 Score=55.49 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=49.7
Q ss_pred CcEEEEcccHHHHHHHHH-HHh-C----CCcEEEEeCChHHHHHHHHhhcc--cCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 7 SRIGLAGLAVMGQNLALN-VAE-K----GFPISVYNRTTSKVDETLDRAHR--EGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~-La~-~----G~~V~v~dr~~~~~~~l~~~~~~--~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
|||+|||.|..|.+++.. |+. . +.++.++|+++++.+...+.... ....++...++..+..++ +|+||+
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~---aDvVVi 77 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVD---AKYVIF 77 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTT---CSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCC---CCEEEE
Confidence 689999999998877744 222 1 35899999999987654322110 001145666777777666 999999
Q ss_pred EcCCC
Q 010637 79 LVKAG 83 (505)
Q Consensus 79 ~vp~~ 83 (505)
+.-.+
T Consensus 78 ta~~~ 82 (162)
T d1up7a1 78 QFRPG 82 (162)
T ss_dssp CCCTT
T ss_pred ecccC
Confidence 87543
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=96.86 E-value=0.001 Score=64.68 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=73.0
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+++|||+|..+...+..+.. .+ -+|.+|+|++++.+++.++.....+..+..+.+++++++. +|+|+.++++..
T Consensus 129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~---ADIi~t~Tas~s 205 (340)
T d1x7da_ 129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKG---VDIITTVTADKA 205 (340)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTT---CSEEEECCCCSS
T ss_pred ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhc---CCceeeccccCC
Confidence 479999999999988887754 34 4799999999999988876432212357789999999998 999999886531
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
...+++ ...+++|..|.-.++-.|.
T Consensus 206 -~~Pv~~--~~~l~pG~hI~aiGs~~p~ 230 (340)
T d1x7da_ 206 -YATIIT--PDMLEPGMHLNAVGGDCPG 230 (340)
T ss_dssp -EEEEEC--GGGCCTTCEEEECSCCBTT
T ss_pred -CCcccc--hhhcCCCCEEeecccchhh
Confidence 111221 1357889888887776553
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.84 E-value=0.0017 Score=51.10 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=46.1
Q ss_pred CCCcEEEEcccHHH-HHHHHHHHhCCCcEEEEeCCh-HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 5 ALSRIGLAGLAVMG-QNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 5 ~~~~IgIIGlG~MG-~~lA~~La~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
..++|=|||.|-.| ++||+.|.+.||+|+++|+.. ..++.+.+.+. .+....+.+. +.. +|+||..
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi-----~v~~g~~~~~-i~~---~d~vV~S 74 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGA-----KIYIGHAEEH-IEG---ASVVVVS 74 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTC-----EEEESCCGGG-GTT---CSEEEEC
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCC-----eEEECCcccc-CCC---CCEEEEC
Confidence 45689999999999 788999999999999999874 44566666542 1333233322 333 7777664
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.83 E-value=0.001 Score=57.89 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=71.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..+|.|||+|-++++++..|.+.|. +|.+++|++++.+.+.+... .....+.. ...+|+||-|+|-|.
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~------~~~~~~~~-----~~~~DliINaTpiGm 85 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG------YAYINSLE-----NQQADILVNVTSIGM 85 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT------CEEESCCT-----TCCCSEEEECSSTTC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhh------hhhhhccc-----ccchhhheeccccCC
Confidence 3579999999999999999999997 79999999999988876532 22222221 123899999998652
Q ss_pred hH--HHH---HHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 85 PV--DQT---IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v--~~v---l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.- +.. +.. ..++++.+++|.--... .| .+.+..+++|...++
T Consensus 86 ~~~~~~~~l~~~~--~~~~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~i~ 132 (167)
T d1npya1 86 KGGKEEMDLAFPK--AFIDNASVAFDVVAMPV-ET-PFIRYAQARGKQTIS 132 (167)
T ss_dssp TTSTTTTSCSSCH--HHHHHCSEEEECCCSSS-SC-HHHHHHHHTTCEEEC
T ss_pred ccccccccccccH--hhcCCcceEEEEeeccC-CC-HHHHHHHHCCCeEEE
Confidence 10 000 000 11335678888755433 33 244555666765543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.0043 Score=53.49 Aligned_cols=93 Identities=11% Similarity=0.168 Sum_probs=65.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.+|.|+|+|.+|...++.+...|.+|.+.++++++.+.+.+.+... +.-..+........+..|++|.++.....+
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~----~i~~~~~~~~~~~~~~~D~vid~~g~~~~~ 107 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADE----VVNSRNADEMAAHLKSFDFILNTVAAPHNL 107 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSE----EEETTCHHHHHTTTTCEEEEEECCSSCCCH
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcE----EEECchhhHHHHhcCCCceeeeeeecchhH
Confidence 4699999999999988888889999999999999887776665431 333344444444555689999999876544
Q ss_pred HHHHHHHHhcCCCCcEEEecC
Q 010637 87 DQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~s 107 (505)
... ...+.++-.++..+
T Consensus 108 ~~~----~~~l~~~G~iv~~G 124 (168)
T d1uufa2 108 DDF----TTLLKRDGTMTLVG 124 (168)
T ss_dssp HHH----HTTEEEEEEEEECC
T ss_pred HHH----HHHHhcCCEEEEec
Confidence 443 34555555555554
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.81 E-value=0.0082 Score=49.73 Aligned_cols=102 Identities=10% Similarity=0.100 Sum_probs=76.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHhcCCCceecccHHHHHH-HHhcCCCCCCCcccH
Q 010637 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKK-AYQRNPNLASLVVDP 404 (505)
Q Consensus 326 ~~~~~v~~v~~al~~~~~~~~aqg~~ll~~~s~~~~w~l~l~~i~~iW~~Gciirs~lL~~i~~-~~~~~~~~~~ll~~~ 404 (505)
+.|+-+|.+.|.+..+.+++++|++.+-++.. +|++++.++.+.| --+|..++.... ....+.. ++
T Consensus 2 G~g~~~Kl~nN~l~~~~~~~~aEal~la~~~G------ld~~~~~~vl~~s-~~~s~~~~~~~p~~~~~~~~------~~ 68 (132)
T d2cvza1 2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQG------VSAEKALEVINAS-SGRSNATENLIPQRVLTRAF------PK 68 (132)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------CCHHHHHHHHTTS-TTCBHHHHHTHHHHTTTSCC------CC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CCHHHHHHHHHhh-hhhhhhhhhhhhHHHHHHhh------hh
Confidence 35788999999999999999999999988643 9999999999876 346777765332 2222211 12
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010637 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFD 442 (505)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gip~p~~saal~y~~ 442 (505)
.|. +.-...+++-+...|-+.|+|+|...++...|.
T Consensus 69 ~f~--~~~~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~ 104 (132)
T d2cvza1 69 TFA--LGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYE 104 (132)
T ss_dssp SSB--HHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred hhH--HHHHhhHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 222 223456778889999999999999999988665
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.81 E-value=0.0026 Score=55.74 Aligned_cols=95 Identities=20% Similarity=0.315 Sum_probs=59.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-cEEEE-eCCh-H-HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGF-PISVY-NRTT-S-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~-~V~v~-dr~~-~-~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|+||||+|+ |..|.-|.+.|.++-+ ++... .++. . ++..+....... ......+++++.++ +|++++++
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~---~~~~~~~~~~~~~~---~dvvf~a~ 74 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLEN---SILSEFDPEKVSKN---CDVLFTAL 74 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCC---CBCBCCCHHHHHHH---CSEEEECC
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhcc---ccccccCHhHhccc---cceEEEcc
Confidence 469999996 9999999999998753 55543 2222 1 122221111110 11223466677666 99999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
|.+.. . ++.+.. ++..|||.|+-+--
T Consensus 75 p~~~s-~----~~~~~~-~~~~VIDlSadfRl 100 (176)
T d1vkna1 75 PAGAS-Y----DLVREL-KGVKIIDLGADFRF 100 (176)
T ss_dssp STTHH-H----HHHTTC-CSCEEEESSSTTTC
T ss_pred ccHHH-H----HHHHhh-ccceEEecCccccc
Confidence 99843 2 233333 68899999987644
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.77 E-value=0.0065 Score=51.19 Aligned_cols=97 Identities=13% Similarity=0.183 Sum_probs=58.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCC--cEEEEeCCh--HHHH----HHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEE
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGF--PISVYNRTT--SKVD----ETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSV 76 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~--~V~v~dr~~--~~~~----~l~~~~~~~g~~~i-~~~~s~~e~v~~l~~advI 76 (505)
+||+||| .|.+|..+|..|...|. ++.++|++. ++.+ .+........ +. ....+++++. .+|+|
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~--~~~i~~~~~~~~~----~aDiV 74 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDS--NTRVRQGGYEDTA----GSDVV 74 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTC--CCEEEECCGGGGT----TCSEE
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccC--CceEeeCCHHHhh----hcCEE
Confidence 4899999 69999999999999986 799999753 3322 2221111110 12 2345665543 39999
Q ss_pred EEEcC----CCc-----------hHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 77 IILVK----AGS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 77 il~vp----~~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+++.- ++. .++++.+.+..+ .++.+++..||-.
T Consensus 75 vitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~-~p~~i~ivvtNPv 122 (142)
T d1o6za1 75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPV 122 (142)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSSH
T ss_pred EEecccccccCCchhhHHHHHHHHHHHHHHHHHhc-CCCceEEEecChH
Confidence 98852 121 123333455544 3667788777743
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=96.75 E-value=0.00048 Score=58.06 Aligned_cols=106 Identities=10% Similarity=0.083 Sum_probs=79.4
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGl----G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|+|||+ +..|..+..+|.+.||++..++.++.. ... . +.....++.++-.. .|++++++|+
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~-----~~i--~---g~~~~~~l~~i~~~---iD~v~v~~p~ 80 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQG-----EEL--F---GEEAVASLLDLKEP---VDILDVFRPP 80 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTT-----SEE--T---TEECBSSGGGCCSC---CSEEEECSCH
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEecccc-----cee--e---ceecccchhhccCC---CceEEEeccH
Confidence 46999997 889999999999999999999877531 011 1 36677888887665 8999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
+.+.++++++... ....+++..+... .+..+.+++.|+.+++.
T Consensus 81 -~~v~~~v~~~~~~-g~k~i~~q~G~~~----~e~~~~a~~~Gi~vV~~ 123 (136)
T d1iuka_ 81 -SALMDHLPEVLAL-RPGLVWLQSGIRH----PEFEKALKEAGIPVVAD 123 (136)
T ss_dssp -HHHTTTHHHHHHH-CCSCEEECTTCCC----HHHHHHHHHTTCCEEES
T ss_pred -HHHHHHHHHHHhh-CCCeEEEecCccC----HHHHHHHHHcCCEEEcC
Confidence 4778888777654 3456777665543 35667778889988863
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=96.75 E-value=0.0035 Score=54.48 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHH-HHHHh--C---CCcEEEEeCChHHHHHHHH---hhc-ccC-CCCeeeeCCHHHHHhhcCCCcE
Q 010637 7 SRIGLAGLAVMGQNLA-LNVAE--K---GFPISVYNRTTSKVDETLD---RAH-REG-QLPLTGHYTPRDFVLSIQRPRS 75 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA-~~La~--~---G~~V~v~dr~~~~~~~l~~---~~~-~~g-~~~i~~~~s~~e~v~~l~~adv 75 (505)
.||+|||.|..|.+.+ ..+.. . +-+|.++|.++++++.... ... ..+ ..++....+..|.++. +|+
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~---AD~ 80 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD---VDF 80 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS---CSE
T ss_pred ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCC---CCE
Confidence 5899999999887643 23332 2 2389999999998763222 110 000 1146777888888777 999
Q ss_pred EEEEcCCCc-----------------------------------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHH
Q 010637 76 VIILVKAGS-----------------------------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120 (505)
Q Consensus 76 Iil~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~ 120 (505)
||++.-.+. .+.++++.+.+. .|+.+++..||-....|....+.
T Consensus 81 Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~-~P~A~li~~TNPvdv~t~~~~k~ 159 (167)
T d1u8xx1 81 VMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY-SPDAWMLNYSNPAAIVAEATRRL 159 (167)
T ss_dssp EEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSCHHHHHHHHHHH
T ss_pred EEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHHHHHHHHH
Confidence 999974421 123344444444 47888999888655445444443
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.73 E-value=0.0014 Score=55.81 Aligned_cols=96 Identities=11% Similarity=0.151 Sum_probs=55.5
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCC-C---cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKG-F---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G-~---~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
|.||||||+ |.+|+-|.+.|.++. | ++..+.++...-....... .. .......+..++ .. +|++|+++
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~-~~--~~~~~~~~~~~~-~~---~DivF~a~ 73 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGG-TT--GTLQDAFDLEAL-KA---LDIIVTCQ 73 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGT-CC--CBCEETTCHHHH-HT---CSEEEECS
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccC-Cc--eeeecccchhhh-hc---CcEEEEec
Confidence 358999997 999999998777653 3 4555554433211111000 00 011122233333 44 99999999
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
|.+ ........+... ..+.+|||.|+.+
T Consensus 74 ~~~-~s~~~~~~~~~~-g~~~~VID~Ss~f 101 (146)
T d1t4ba1 74 GGD-YTNEIYPKLRES-GWQGYWIDAASSL 101 (146)
T ss_dssp CHH-HHHHHHHHHHHT-TCCCEEEECSSTT
T ss_pred Cch-HHHHhhHHHHhc-CCCeecccCCccc
Confidence 885 445555555442 2346899998865
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.71 E-value=0.0017 Score=50.32 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=45.3
Q ss_pred CcEEEEcccHHHH-HHHHHHHhCCCcEEEEeCCh-HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 7 SRIGLAGLAVMGQ-NLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~-~lA~~La~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
|||=|||.|-+|. +||+.|.++|+.|+++|+.+ +.+++|.+.+. .+....+.+ .+..+|+||..
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi-----~i~~gh~~~----~i~~~d~vV~S 67 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGI-----PIFVPHSAD----NWYDPDLVIKT 67 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTC-----CEESSCCTT----SCCCCSEEEEC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCC-----eEEeeeccc----ccCCCCEEEEe
Confidence 6899999999994 89999999999999999887 44666666542 132222322 22347877665
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.71 E-value=0.003 Score=52.07 Aligned_cols=95 Identities=13% Similarity=0.129 Sum_probs=61.6
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHh--hcCCCcEEEEEcCCCch
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~--~l~~advIil~vp~~~~ 85 (505)
-|-|+|.|.+|..++..| +|++|.+.+.++++.+.+...+..- +.+..+-.++.. .+.+++.++++.+++..
T Consensus 2 HivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~~~~~~----i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~ 75 (129)
T d2fy8a1 2 HVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKVLRSGANF----VHGDPTRVSDLEKANVRGARAVIVNLESDSE 75 (129)
T ss_dssp CEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHHHHTTCEE----EESCTTSHHHHHHTTCTTCSEEEECCSSHHH
T ss_pred EEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHHHhcCccc----cccccCCHHHHHHhhhhcCcEEEEeccchhh
Confidence 367899999999999999 4678999999999988887654321 222223345444 36779999998887543
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (505)
...++..+....+.-.+++-+.+
T Consensus 76 n~~~~~~~r~~~~~~~iia~~~~ 98 (129)
T d2fy8a1 76 TIHCILGIRKIDESVRIIAEAER 98 (129)
T ss_dssp HHHHHHHHHHHCSSSCEEEECSS
T ss_pred hHHHHHHHHHHCCCceEEEEEcC
Confidence 33333333332333356665544
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.68 E-value=0.00024 Score=62.65 Aligned_cols=119 Identities=13% Similarity=0.053 Sum_probs=73.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCC---eeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLP---LTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~---i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
.++|-|||.|-++++++..|.+.| +|++++|++++.+.+.+......... .....++... +..+|+||-++|.
T Consensus 18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~dliIn~tp~ 93 (177)
T d1nvta1 18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVD---LDGVDIIINATPI 93 (177)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCC---CTTCCEEEECSCT
T ss_pred CCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhc---cchhhhhccCCcc
Confidence 357999999999999999998877 89999999999888765432100000 0111222222 3348999999987
Q ss_pred CchHHHHHHHH--HhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 83 GSPVDQTIAAL--SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 83 ~~~v~~vl~~l--~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+..-....... ...+.++.+++|..-....+ .+.+..++.|...++
T Consensus 94 g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~T--~l~~~a~~~G~~~i~ 141 (177)
T d1nvta1 94 GMYPNIDVEPIVKAEKLREDMVVMDLIYNPLET--VLLKEAKKVNAKTIN 141 (177)
T ss_dssp TCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSC--HHHHHHHTTTCEEEC
T ss_pred cccccccccchhhhhccCcccceeeecCCcHhH--HHHHHHHHCCCcccC
Confidence 63211100001 12356788999986554433 344445666776654
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.68 E-value=0.0082 Score=52.03 Aligned_cols=109 Identities=14% Similarity=0.049 Sum_probs=65.9
Q ss_pred CcEEEEcccHHHH--HHHHHHHhC----CCcEEEEeCChHH--HHHHHHhh---c-ccC-CCCeeeeCCHHHHHhhcCCC
Q 010637 7 SRIGLAGLAVMGQ--NLALNVAEK----GFPISVYNRTTSK--VDETLDRA---H-REG-QLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 7 ~~IgIIGlG~MG~--~lA~~La~~----G~~V~v~dr~~~~--~~~l~~~~---~-~~g-~~~i~~~~s~~e~v~~l~~a 73 (505)
+||+|||+|..|. .++..+... +-++.++|+++++ .+.+-... . ..+ ..++..+++..+..+. +
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~g---a 78 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG---A 78 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---C
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCC---C
Confidence 6899999997764 444444432 2389999998854 33222110 0 000 1145667788777666 9
Q ss_pred cEEEEEcCCCch-----------------------------------HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHH
Q 010637 74 RSVIILVKAGSP-----------------------------------VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRI 118 (505)
Q Consensus 74 dvIil~vp~~~~-----------------------------------v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~ 118 (505)
|+||++...+.. +++++..+..+ .|+.+++..||-....+....
T Consensus 79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~-~pda~~i~vtNPvdv~t~~~~ 157 (169)
T d1s6ya1 79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTNPAGMVTEAVL 157 (169)
T ss_dssp SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHH
T ss_pred CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhc-CCCeEEEEeCChHHHHHHHHH
Confidence 999999865421 34444555554 578899988886544444343
Q ss_pred H
Q 010637 119 H 119 (505)
Q Consensus 119 ~ 119 (505)
+
T Consensus 158 k 158 (169)
T d1s6ya1 158 R 158 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.62 E-value=0.0057 Score=52.22 Aligned_cols=105 Identities=14% Similarity=0.028 Sum_probs=63.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChHH--HHHHHHhh---cccCCCCeeeeCCHHHHHhhcCC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VDETLDRA---HREGQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~-------~V~v~dr~~~~--~~~l~~~~---~~~g~~~i~~~~s~~e~v~~l~~ 72 (505)
-+||+|||+ |.+|.++|..|+..+. ++.++|.+..+ .+.+.-.. .......+....+..+..++
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 79 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKD--- 79 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTT---
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCC---
Confidence 359999995 9999999999986542 46778776543 33332111 10000035666777777776
Q ss_pred CcEEEEEcCCC---------------chHHHHHHHHHhcCCCCcEEEecCCCCchhHH
Q 010637 73 PRSVIILVKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (505)
Q Consensus 73 advIil~vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~ 115 (505)
+|+||++-... ..++++...+..+.++.-++|..|| |-++.
T Consensus 80 ~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsN--PvD~m 135 (154)
T d5mdha1 80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN--PANTN 135 (154)
T ss_dssp CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHH
T ss_pred ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecC--cHHHH
Confidence 99999986321 1244444566665555555666666 44443
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.56 E-value=0.0013 Score=56.06 Aligned_cols=95 Identities=16% Similarity=0.189 Sum_probs=54.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-CC---cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEK-GF---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~-G~---~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
|||||||. |..|+-|.+.|.++ .| ++..+..+... .+........ .......+.+. .+. +|++|+|+|
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~-gk~~~~~~~~--~~~~~~~~~~~-~~~---~DvvF~alp 73 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG-VPAPNFGKDA--GMLHDAFDIES-LKQ---LDAVITCQG 73 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS-SBCCCSSSCC--CBCEETTCHHH-HTT---CSEEEECSC
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc-ccccccCCcc--eeeecccchhh-hcc---ccEEEEecC
Confidence 68999985 99999999887764 34 34444333211 0000000000 01112223333 333 999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
++ ...++...+... ..+.+|||.|..+
T Consensus 74 ~~-~s~~~~~~l~~~-g~~~~VIDlSsdf 100 (147)
T d1mb4a1 74 GS-YTEKVYPALRQA-GWKGYWIDAASTL 100 (147)
T ss_dssp HH-HHHHHHHHHHHT-TCCSEEEESSSTT
T ss_pred ch-HHHHHhHHHHHc-CCceEEEeCCccc
Confidence 96 456666666542 2346899999875
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.46 E-value=0.001 Score=56.56 Aligned_cols=92 Identities=13% Similarity=0.044 Sum_probs=54.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC---cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~ 82 (505)
|+|||||+ |..|.-|.+.|.++.| ++.....+...-+.+.... . .........+.... +|++|+++|.
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~-~----~~~~~~~~~~~~~~---~d~vf~a~p~ 74 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAE-S----SLRVGDVDSFDFSS---VGLAFFAAAA 74 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETT-E----EEECEEGGGCCGGG---CSEEEECSCH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeecc-c----cchhccchhhhhcc---ceEEEecCCc
Confidence 68999997 9999999999987765 5555433322111110000 0 11111111122233 8999999988
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+ ........+ ..+|.+|||.|+.+
T Consensus 75 ~-~s~~~~~~~---~~~g~~VID~Ss~f 98 (144)
T d2hjsa1 75 E-VSRAHAERA---RAAGCSVIDLSGAL 98 (144)
T ss_dssp H-HHHHHHHHH---HHTTCEEEETTCTT
T ss_pred c-hhhhhcccc---ccCCceEEeechhh
Confidence 5 444444444 34789999998865
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.38 E-value=0.0037 Score=54.75 Aligned_cols=101 Identities=15% Similarity=0.185 Sum_probs=59.3
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhC-CCcEE-EEeCCh-----HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEE
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEK-GFPIS-VYNRTT-----SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~-G~~V~-v~dr~~-----~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIi 77 (505)
|+|||||| .|..|.-|.+.|..| .+++. ++.++. .+.............+......+....... .|++|
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~dvvf 77 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSAD---VDVVF 77 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTT---CCEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcc---cceee
Confidence 57999999 599999999999998 56665 333221 122222111100000112333343333333 89999
Q ss_pred EEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchh
Q 010637 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN 113 (505)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~ 113 (505)
+++|++ ...+....+ ..++..|||.|..+--.
T Consensus 78 ~alp~~-~s~~~~~~~---~~~~~~vIDlSadfRl~ 109 (179)
T d2g17a1 78 LATAHE-VSHDLAPQF---LQAGCVVFDLSGAFRVN 109 (179)
T ss_dssp ECSCHH-HHHHHHHHH---HHTTCEEEECSSTTSSS
T ss_pred ccccch-hHHHHhhhh---hhcCceeeccccccccc
Confidence 999986 334444443 34788999999876543
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.37 E-value=0.01 Score=54.77 Aligned_cols=84 Identities=15% Similarity=0.320 Sum_probs=58.3
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCC
Q 010637 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
+||++| | .+-+|..+|+.|++.|++|.+.+|++++++++.++....| .+++.+. +.+
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g-------------------~~~~~~~~Dv~~ 61 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG-------------------GHAVAVKVDVSD 61 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------------CCEEEEECCTTS
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------------CcEEEEEeeCCC
Confidence 478777 5 5779999999999999999999999998877765422110 2233222 334
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.+.++.+++.+...+.+=|++|++...
T Consensus 62 ~~~v~~~~~~~~~~~g~iDilVnnAG~ 88 (255)
T d1gega_ 62 RDQVFAAVEQARKTLGGFDVIVNNAGV 88 (255)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCccEEEecccc
Confidence 456777777777766666788876543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.31 E-value=0.012 Score=54.11 Aligned_cols=84 Identities=10% Similarity=0.141 Sum_probs=60.1
Q ss_pred cEEEE-cc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCC
Q 010637 8 RIGLA-GL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgII-Gl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
|+.+| |. +-+|..+|..|+++|++|.+.+|++++++++.++.... . .++..+. +.+.
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~----------------~---~~~~~~~~Dvs~~ 68 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL----------------G---AKVHTFVVDCSNR 68 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEeeCCCH
Confidence 56666 54 67999999999999999999999999988876642211 1 2333333 3444
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.++..++.+.....+=+++|++....
T Consensus 69 ~~v~~~~~~i~~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 69 EDIYSSAKKVKAEIGDVSILVNNAGVV 95 (244)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCCceeEeecccc
Confidence 567777777777777778888876653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.25 E-value=0.017 Score=50.12 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=37.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA 49 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~ 49 (505)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.+
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lG 73 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIG 73 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEECCCccchhheeccccccccccccccccccccccccccc
Confidence 469999999999999888888997 7999999999988776654
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.011 Score=54.23 Aligned_cols=81 Identities=12% Similarity=0.260 Sum_probs=57.0
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+.|| | .+-+|..+|+.|++.|++|.+.+|++++++++.++.... ...+..=+.+.+.
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~--------------------~~~~~~Dv~~~~~ 64 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGAN--------------------GKGLMLNVTDPAS 64 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG--------------------EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCC--------------------CcEEEEEecCHHH
Confidence 67777 5 588999999999999999999999999888776542110 1112222344456
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (505)
++++++.+.....+=|++|+...
T Consensus 65 v~~~~~~~~~~~g~iDilVnnAg 87 (243)
T d1q7ba_ 65 IESVLEKIRAEFGEVDILVNNAG 87 (243)
T ss_dssp HHHHHHHHHHHTCSCSEEEECCC
T ss_pred hhhhhhhhhcccCCcceehhhhh
Confidence 77777777776666677877643
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.09 E-value=0.0074 Score=55.84 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=57.7
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCC
Q 010637 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
||++| |.+-+|.++|+.|++.|++|.+.+|++++++++.++.... . .++..+. +.+.
T Consensus 3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~----------------g---~~~~~~~~Dvs~~ 63 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA----------------G---VEADGRTCDVRSV 63 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEeecCCH
Confidence 68888 5678999999999999999999999999888776542211 0 2233222 2344
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+.++.+++.+.....+=|++|++..
T Consensus 64 ~~v~~~~~~~~~~~g~iDilVnnAG 88 (257)
T d2rhca1 64 PEIEALVAAVVERYGPVDVLVNNAG 88 (257)
T ss_dssp HHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEeccc
Confidence 5677777777776666678887643
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.08 E-value=0.0066 Score=50.58 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=67.0
Q ss_pred CCcEEEEccc----------HHHHHHHHHHHhCCCcEEEEeCChHHH-------HHHHHhhcccCCCCeeeeCCHHHHHh
Q 010637 6 LSRIGLAGLA----------VMGQNLALNVAEKGFPISVYNRTTSKV-------DETLDRAHREGQLPLTGHYTPRDFVL 68 (505)
Q Consensus 6 ~~~IgIIGlG----------~MG~~lA~~La~~G~~V~v~dr~~~~~-------~~l~~~~~~~g~~~i~~~~s~~e~v~ 68 (505)
..||+|+|+- .-...++..|.+.|.+|.+||..-+.. +.+....... +...++++.+++.
T Consensus 13 ~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~i~ 89 (136)
T d1mv8a3 13 TRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHV---SSLLVSDLDEVVA 89 (136)
T ss_dssp CCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHH---HTTBCSCHHHHHH
T ss_pred CCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccc---cceeehhhhhhhh
Confidence 3589999984 567889999999999999999643221 1111110000 1345789999999
Q ss_pred hcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCch
Q 010637 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (505)
Q Consensus 69 ~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (505)
. +|+||++++... .+ .+...+.++.+|+|+-+..+.
T Consensus 90 ~---~D~ivi~t~h~~-f~----~l~~~~~~~~~I~D~~~~~~~ 125 (136)
T d1mv8a3 90 S---SDVLVLGNGDEL-FV----DLVNKTPSGKKLVDLVGFMPH 125 (136)
T ss_dssp H---CSEEEECSCCGG-GH----HHHHSCCTTCEEEESSSCCSS
T ss_pred h---ceEEEEEeCCHH-HH----HHHHHhcCCCEEEECCCCCCh
Confidence 8 999999999864 33 344456678999999887653
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.07 E-value=0.0013 Score=56.96 Aligned_cols=95 Identities=14% Similarity=0.228 Sum_probs=59.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhh-cCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLS-IQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~-l~~advIil~vp~~~~ 85 (505)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.+... +....+..+..+. ....|+++.++.....
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~----~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~ 104 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADH----YIATLEEGDWGEKYFDTFDLIVVCASSLTD 104 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSE----EEEGGGTSCHHHHSCSCEEEEEECCSCSTT
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcE----EeeccchHHHHHhhhcccceEEEEecCCcc
Confidence 4799999999999988877788999999999999998887766431 2212222233332 2335778777655321
Q ss_pred HHHHHHHHHhcCCCCcEEEecC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~s 107 (505)
. .++.....+.++-.++..+
T Consensus 105 ~--~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 105 I--DFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp C--CTTTGGGGEEEEEEEEECC
T ss_pred c--hHHHHHHHhhccceEEEec
Confidence 1 1223334444544444444
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.07 E-value=0.014 Score=53.68 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=57.7
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCC
Q 010637 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
-||++| | .+-+|..+|+.|++.|++|.+++|++++++++.++....| .++..+. +.+
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g-------------------~~~~~~~~Dvt~ 70 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG-------------------YESSGYAGDVSK 70 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT-------------------CCEEEEECCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------------CcEEEEEccCCC
Confidence 478877 5 5789999999999999999999999998877765432110 2222222 244
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
.+.++++++.+.....+=|++|+...
T Consensus 71 ~~~v~~~~~~~~~~~g~iDilvnnag 96 (251)
T d2c07a1 71 KEEISEVINKILTEHKNVDILVNNAG 96 (251)
T ss_dssp HHHHHHHHHHHHHHCSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhcCCceeeeeccc
Confidence 45677777777766656677777543
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.06 E-value=0.013 Score=51.13 Aligned_cols=37 Identities=8% Similarity=0.236 Sum_probs=28.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEE-eCChHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVY-NRTTSKV 42 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-~~V~v~-dr~~~~~ 42 (505)
|-||||.|+|++|+.+++.+.++. ++|..+ |+++...
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~ 39 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYE 39 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHH
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHH
Confidence 358999999999999999999764 676654 6665543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.05 E-value=0.0037 Score=54.54 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=60.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCee-e-eCCHHHHHhhc---CCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLT-G-HYTPRDFVLSI---QRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~-~-~~s~~e~v~~l---~~advIil~v 80 (505)
.+|.|+|+|.+|...++.+...|. +|++.|++++|.+...+.+... +. . ..++.+.+.++ +..|+||.++
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~----~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATD----ILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSE----EECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccc----cccccchhHHHHHHHHhhccCcceEEEcc
Confidence 369999999999998888888896 7999999999988777665421 11 0 12233333322 2368888888
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
.....++..+ ..+.++-.++..+.
T Consensus 105 g~~~~~~~a~----~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 105 GGSETLSQAV----KMVKPGGIISNINY 128 (174)
T ss_dssp SCTTHHHHHH----HHEEEEEEEEECCC
T ss_pred CCHHHHHHHH----HHHhcCCEEEEEee
Confidence 7654444333 33445555555543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.03 E-value=0.012 Score=51.87 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=36.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~ 48 (505)
++|-|.| .|-+|..+|+.|++.|.+|.+.+|++++.+++.+.
T Consensus 24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~ 66 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADS 66 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHH
Confidence 4577777 69999999999999999999999999998777654
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.95 E-value=0.011 Score=51.35 Aligned_cols=38 Identities=13% Similarity=0.336 Sum_probs=29.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC-CcEE-EEeCChHHH
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKG-FPIS-VYNRTTSKV 42 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G-~~V~-v~dr~~~~~ 42 (505)
|.+||||.|.|++|+.+.+.+.++. .+|. +.|.++...
T Consensus 1 M~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~ 40 (172)
T d2czca2 1 MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFE 40 (172)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHH
T ss_pred CcEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHH
Confidence 4569999999999999999998754 5554 557766543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.013 Score=53.80 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=39.1
Q ss_pred CCcCCCCcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh
Q 010637 1 MEASALSRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA 49 (505)
Q Consensus 1 m~~~~~~~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~ 49 (505)
|.+...-|+.+| | .+-+|.++|+.|++.|++|.+.+|++++++++.++.
T Consensus 1 M~~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~ 51 (244)
T d1pr9a_ 1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC 51 (244)
T ss_dssp CCCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc
Confidence 554433355555 5 588999999999999999999999999988877653
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=95.89 E-value=0.0047 Score=53.29 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=66.5
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChHHH-HHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcC
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKV-DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~-G~~V~-v~dr~~~~~-~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp 81 (505)
.+||+|+|+ |.||+.+++.+.+. ++++. +++|..... ..-.......+..++....+++++.+. +|+||-...
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~---~DViIDFs~ 80 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDD---FDVFIDFTR 80 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTS---CSEEEECSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcc---cceEEEecc
Confidence 468999995 99999999988775 66654 556653221 000000000001135667777776665 999988766
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHH
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS 122 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~ 122 (505)
+ ..+.+.++.. ...+.-+|-+||+...+..+..+.+.
T Consensus 81 p-~~~~~~~~~a---~~~~~~~ViGTTG~~~~~~~~i~~~a 117 (162)
T d1diha1 81 P-EGTLNHLAFC---RQHGKGMVIGTTGFDEAGKQAIRDAA 117 (162)
T ss_dssp H-HHHHHHHHHH---HHTTCEEEECCCCCCHHHHHHHHHHT
T ss_pred H-HHHHHHHHHH---HhccceeEEecCCCcHHHHHHHHHHc
Confidence 5 3555555443 33567788888988665544444443
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=95.87 E-value=0.047 Score=47.35 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=64.2
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChH--HHHHHHHh---hcccCCCCeeeeCCHHHHHhhcCCCc
Q 010637 8 RIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTS--KVDETLDR---AHREGQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~G~-------~V~v~dr~~~--~~~~l~~~---~~~~g~~~i~~~~s~~e~v~~l~~ad 74 (505)
||.|+|+ |.+|.+++.+|+.... .+.++|.+.. +++.+.-+ ........+..+++..+..++ +|
T Consensus 26 kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~---aD 102 (175)
T d7mdha1 26 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFED---VD 102 (175)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---CS
T ss_pred EEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccC---Cc
Confidence 7999996 9999999999997532 5667777664 23332211 110000035667777777666 99
Q ss_pred EEEEEcCC----Cc-----------hHHHHHHHHHhcCCCCcEEEecCCCCchhHHH
Q 010637 75 SVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTER 116 (505)
Q Consensus 75 vIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~ 116 (505)
+||+.--. +. .++++.+.+..+.+++.+|+-.|| |.++..
T Consensus 103 vVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t 157 (175)
T d7mdha1 103 WALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNA 157 (175)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHH
T ss_pred eEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHH
Confidence 99998622 11 133444566666666777777777 455544
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.85 E-value=0.017 Score=52.92 Aligned_cols=83 Identities=10% Similarity=0.107 Sum_probs=57.6
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
-|+.+| | .+-+|..+|+.|++.|++|.+.+|++++++++.++... . +..+-.=+.+.+
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~~~~ 65 (244)
T d1nffa_ 6 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD-----------------A---ARYVHLDVTQPA 65 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG-----------------G---EEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhC-----------------c---ceEEEeecCCHH
Confidence 367776 5 58899999999999999999999999988877664321 0 111111134445
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++++++++.....+=+++|++...
T Consensus 66 ~v~~~~~~~~~~~g~idilinnAG~ 90 (244)
T d1nffa_ 66 QWKAAVDTAVTAFGGLHVLVNNAGI 90 (244)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCeEEEECCcc
Confidence 6777777777666566788876554
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=95.84 E-value=0.018 Score=52.71 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=55.2
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
-|+.+| | .+-+|..+|+.|++.|++|.+.+|++++++++.++. +.. .+..=+.+.+
T Consensus 5 gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~------~~~----------------~~~~Dv~~~~ 62 (242)
T d1ulsa_ 5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV------GAH----------------PVVMDVADPA 62 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT------TCE----------------EEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc------CCe----------------EEEEecCCHH
Confidence 366666 5 577999999999999999999999999888776532 111 1111233445
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++++++++.....+=|++|++...
T Consensus 63 ~v~~~~~~~~~~~g~iDilVnnAG~ 87 (242)
T d1ulsa_ 63 SVERGFAEALAHLGRLDGVVHYAGI 87 (242)
T ss_dssp HHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHhcCCceEEEECCcc
Confidence 6677777666655555777776543
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.84 E-value=0.003 Score=57.85 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=31.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
|+|.|||.|.-|...|..|+++|++|+++++++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 689999999999999999999999999999875
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.014 Score=53.87 Aligned_cols=80 Identities=10% Similarity=0.185 Sum_probs=56.0
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+.+| | .+-+|.++|+.|++.|++|.+.+|++++++++.++... +..+..=+.+.+.
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~---------------------~~~~~~Dvs~~~~ 65 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPG---------------------AVFILCDVTQEDD 65 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT---------------------EEEEECCTTSHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCC---------------------CeEEEccCCCHHH
Confidence 56666 4 58999999999999999999999999988877664321 1111112344456
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (505)
++.+++++.....+=|++|+...
T Consensus 66 v~~~~~~~~~~~g~iDilVnnAG 88 (250)
T d1ydea1 66 VKTLVSETIRRFGRLDCVVNNAG 88 (250)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHhcCCCCEEEeccc
Confidence 77777777665555578887654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=95.77 E-value=0.024 Score=52.34 Aligned_cols=82 Identities=16% Similarity=0.261 Sum_probs=56.6
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCC
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
|+.+| | .+-+|..+|+.|++.|++|.+.+|++++++++.++.... . .++..+. +.+.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~----------------g---~~~~~~~~Dv~~~ 66 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK----------------G---VEARSYVCDVTSE 66 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------T---SCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCCH
Confidence 56666 5 577999999999999999999999999887766542111 0 2333332 3444
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+.++++++.+...+.+=|++|+...
T Consensus 67 ~~v~~~~~~~~~~~g~iDilVnnaG 91 (260)
T d1zema1 67 EAVIGTVDSVVRDFGKIDFLFNNAG 91 (260)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCeehhhhc
Confidence 5677777777766655678887643
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.76 E-value=0.029 Score=43.85 Aligned_cols=90 Identities=14% Similarity=0.186 Sum_probs=61.1
Q ss_pred chhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhh
Q 010637 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDK 262 (505)
Q Consensus 183 ~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~ 262 (505)
.+.++|++.|.+.+..+.+++|.+.++++.| +|..++.+++.. ...-..++ ..+.-.-.|++. -+-+|
T Consensus 3 ~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g-~d~~~v~~~~~~-d~ri~~~~------~~~~pG~G~GG~----ClpKD 70 (98)
T d1mv8a1 3 VAEMIKYTCNVWHAAKVTFANEIGNIAKAVG-VDGREVMDVICQ-DHKLNLSR------YYMRPGFAFGGS----CLPKD 70 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHHTT-CTTTTTSS------TTCSCCSCCCSS----SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHhc-Cccccccc------cccCCcccCCcc----ccchh
Confidence 5789999999999999999999999999998 999999988721 00000111 011111124333 22334
Q ss_pred hCCCchHHHHHHHHHHcCCCcchHHHHH
Q 010637 263 TGMKGTGKWTVQQAAELSVAAPTIAASL 290 (505)
Q Consensus 263 ~~~kgtg~~~~~~A~~~gvp~p~i~~av 290 (505)
.. .....|.+.|++.+++.++.
T Consensus 71 ~~------al~~~a~~~~~~~~ll~~~~ 92 (98)
T d1mv8a1 71 VR------ALTYRASQLDVEHPMLGSLM 92 (98)
T ss_dssp HH------HHHHHHHHTTCCCTTGGGHH
T ss_pred HH------HHHHHHHHcCCChHHHHHHH
Confidence 32 46678999999999988653
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=0.025 Score=52.06 Aligned_cols=83 Identities=11% Similarity=0.202 Sum_probs=56.8
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc--CCC
Q 010637 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KAG 83 (505)
Q Consensus 8 ~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p~~ 83 (505)
|+.|| |.+-+|.++|+.|++.|++|.+.+|++++++++.++....| .+++.+.+ .+.
T Consensus 12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g-------------------~~~~~~~~Dvs~~ 72 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-------------------GQAFACRCDITSE 72 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT-------------------CCEEEEECCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-------------------CcEEEEEccCCCH
Confidence 68888 56889999999999999999999999998877765422110 23333322 333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+.++++++.+...+.+=|++|++...
T Consensus 73 ~~~~~~~~~~~~~~g~iDilvnnAG~ 98 (255)
T d1fmca_ 73 QELSALADFAISKLGKVDILVNNAGG 98 (255)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEeeeCCcC
Confidence 45666666666655555777776443
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=95.66 E-value=0.02 Score=53.43 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=55.5
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+.+| | .+-+|..+|+.|++.|++|.+.+|++++++++.++... . +..+..=+.+.+.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~-----------------~---~~~~~~Dv~~~~~ 65 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGD-----------------N---VLGIVGDVRSLED 65 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----------------G---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCC-----------------C---eeEEecccccHHH
Confidence 56666 5 58999999999999999999999999988776654211 1 1222222344455
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (505)
+++.++.+.....+=+++|+...
T Consensus 66 ~~~~~~~~~~~~g~idilvnnAG 88 (276)
T d1bdba_ 66 QKQAASRCVARFGKIDTLIPNAG 88 (276)
T ss_dssp HHHHHHHHHHHHSCCCEEECCCC
T ss_pred HHHHHHHHHHHhCCccccccccc
Confidence 66777776666656677777654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=95.64 E-value=0.015 Score=53.82 Aligned_cols=85 Identities=13% Similarity=0.206 Sum_probs=56.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
++-|.| .+-+|.++|+.|++.|++|.+.+|++++++++.++....+ .. ...+..=+.+.+.+
T Consensus 8 ~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~--------------~~---~~~~~~D~s~~~~~ 70 (258)
T d1ae1a_ 8 TALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--------------LN---VEGSVCDLLSRTER 70 (258)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CC---EEEEECCTTCHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CC---ceEEEeecCCHHHH
Confidence 344556 6889999999999999999999999988877665432110 00 12222233444567
Q ss_pred HHHHHHHHhcC-CCCcEEEecCCC
Q 010637 87 DQTIAALSEHM-SPGDCIIDGGNE 109 (505)
Q Consensus 87 ~~vl~~l~~~l-~~g~iIId~st~ 109 (505)
+++++++.... .+-+++|++...
T Consensus 71 ~~~~~~~~~~~~g~idilinnag~ 94 (258)
T d1ae1a_ 71 DKLMQTVAHVFDGKLNILVNNAGV 94 (258)
T ss_dssp HHHHHHHHHHTTSCCCEEEECCCC
T ss_pred HHHHHHHHHHhCCCcEEEeccccc
Confidence 77777777665 356777775543
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=95.61 E-value=0.019 Score=52.97 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=52.8
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+.+| | .+-+|..+|+.|++.|++|.+.+|++++++++.++... + +..+..=+.+.+.
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~----~----------------~~~~~~Dv~~~~~ 65 (254)
T d1hdca_ 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGD----A----------------ARYQHLDVTIEED 65 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGG----G----------------EEEEECCTTCHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC----c----------------eEEEEcccCCHHH
Confidence 45555 5 57899999999999999999999999988777654211 0 1111111334445
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (505)
++++++.+.....+=|++|++..
T Consensus 66 v~~~~~~~~~~~g~iDilVnnAg 88 (254)
T d1hdca_ 66 WQRVVAYAREEFGSVDGLVNNAG 88 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCccEEEecCc
Confidence 66666666655544567776543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.60 E-value=0.019 Score=49.03 Aligned_cols=44 Identities=9% Similarity=0.217 Sum_probs=38.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~ 50 (505)
.+|.|+|+|.+|...+..+...|.+|.+.++++++.+.+.+.+.
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga 72 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA 72 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc
Confidence 46999999999999998888899999999999999888776654
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=95.60 E-value=0.019 Score=53.01 Aligned_cols=84 Identities=11% Similarity=0.207 Sum_probs=56.6
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCC
Q 010637 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
-|++|| | .+-+|..+|+.|++.|++|.+.+|++++++++.++.... . .++..+. +.+
T Consensus 8 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~----------------g---~~~~~~~~Dv~~ 68 (259)
T d2ae2a_ 8 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK----------------G---FKVEASVCDLSS 68 (259)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CEEEEEECCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CCceEEEeeCCC
Confidence 356666 5 578999999999999999999999999888776542211 0 2222222 234
Q ss_pred CchHHHHHHHHHhcCC-CCcEEEecCCC
Q 010637 83 GSPVDQTIAALSEHMS-PGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~-~g~iIId~st~ 109 (505)
.+.++++++.+...+. +=+++|+....
T Consensus 69 ~~~v~~~~~~~~~~~~~~idilvnnAG~ 96 (259)
T d2ae2a_ 69 RSERQELMNTVANHFHGKLNILVNNAGI 96 (259)
T ss_dssp HHHHHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCceEEEECCce
Confidence 4566777777766554 45788876543
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.0054 Score=49.45 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=33.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK 41 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~ 41 (505)
.+||||||.|..|+.|+....+.|++|.++|.+++.
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~ 46 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA 46 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 358999999999999999999999999999988763
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=95.59 E-value=0.0039 Score=56.89 Aligned_cols=35 Identities=29% Similarity=0.529 Sum_probs=32.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+||.|||.|.-|..+|..|+++|++|.+++++++
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 46899999999999999999999999999998754
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=95.58 E-value=0.025 Score=45.54 Aligned_cols=113 Identities=17% Similarity=0.088 Sum_probs=86.3
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..||-|-|. |.-|+..+..+.+.|-+|.. ..+|.+- +... .++-++++.+|+++.. .+|.-++.||+..
T Consensus 6 ~trVlvQGiTG~~G~~ht~~m~~yGT~vVa-GVtPgkg------G~~~--~giPVf~sV~eAv~~~-~~~~SvIfVPp~~ 75 (119)
T d2nu7a1 6 NTKVICQGFTGSQGTFHSEQAIAYGTKMVG-GVTPGKG------GTTH--LGLPVFNTVREAVAAT-GATASVIYVPAPF 75 (119)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEE-EECTTCT------TEEE--TTEEEESSHHHHHHHH-CCCEEEECCCGGG
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCceEE-EEccCCC------Cccc--CCCchhhHHHHHHHHh-CCCeEEEeccHHH
Confidence 468999997 99999999999999988652 2334321 1111 2588999999999874 5899999999988
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+.+.+++.+...+ ..+++-+-.....|..++.+.+++++..+++
T Consensus 76 a~dA~~EAi~agI--~~iV~ITEgIP~~D~~~i~~~~~~~~~~liG 119 (119)
T d2nu7a1 76 CKDSILEAIDAGI--KLIITITEGIPTLDMLTVKVKLDEAGVRMIG 119 (119)
T ss_dssp HHHHHHHHHHTTC--SEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHCCC--CEEEEecCCCCHHHHHHHHHHHhhCCCEEeC
Confidence 8888888886655 3567777777888888888888888887764
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.024 Score=53.50 Aligned_cols=89 Identities=11% Similarity=0.275 Sum_probs=58.7
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc--CC
Q 010637 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KA 82 (505)
Q Consensus 7 ~~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v--p~ 82 (505)
-|++|| |.+-+|.++|+.|++.|++|.+.+|+.+++++..++.... . ......+++.+.+ .+
T Consensus 12 gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~----------~----~~~~~~~~~~~~~Dvs~ 77 (297)
T d1yxma1 12 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQAN----------L----PPTKQARVIPIQCNIRN 77 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------S----CTTCCCCEEEEECCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh----------h----ccccCceEEEEeccCCC
Confidence 366666 4688999999999999999999999999887765542110 0 0000134444443 34
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.+.++++++.+...+.+=+++|+....
T Consensus 78 ~~~v~~~~~~~~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 78 EEEVNNLVKSTLDTFGKINFLVNNGGG 104 (297)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeeccc
Confidence 456777777776666566788876543
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.56 E-value=0.072 Score=44.04 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=60.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHh-CCCcEE-EEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAE-KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~-~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
||+|+| .|.||+.++..+.+ .++++. .+|+.. ++..... ..+|+||=...+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~----------------------~~~~~~~--~~~DvvIDFS~p~- 55 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD----------------------PLSLLTD--GNTEVVIDFTHPD- 55 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC----------------------CTHHHHT--TTCSEEEECCCTT-
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC----------------------chhhhcc--ccCCEEEEcccHH-
Confidence 699999 59999999888765 467765 455431 1122221 1389999887664
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHH-H-HHCCCeEEeCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE-A-SQKGLLYLGMG 132 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~-l-~~~gi~~i~~p 132 (505)
.+.+.++... ..|.-+|-+||+......+..+. + +.+.+-.+-+|
T Consensus 56 ~~~~~~~~~~---~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~ap 102 (135)
T d1yl7a1 56 VVMGNLEFLI---DNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAP 102 (135)
T ss_dssp THHHHHHHHH---HTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECS
T ss_pred HHHHHHHHHH---hcCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcC
Confidence 5666665544 35677888888886554443333 2 34556555554
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.53 E-value=0.013 Score=50.47 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=56.4
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~-MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||-+. +|.+|+..|.+.|..|++++... .++.+.... +|+||.++.....
T Consensus 38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t---------------------~~l~~~~~~---ADivI~a~G~p~~ 93 (166)
T d1b0aa1 38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------------------KNLRHHVEN---ADLLIVAVGKPGF 93 (166)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------------------SCHHHHHHH---CSEEEECSCCTTC
T ss_pred ceEEEEeccccccHHHHHHHHHhhcccccccccc---------------------chhHHHHhh---hhHhhhhccCccc
Confidence 5799999865 99999999999999999997543 244455555 9999999976533
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+. ...+++|.++||.+..
T Consensus 94 i~------~~~vk~g~vvIDvGi~ 111 (166)
T d1b0aa1 94 IP------GDWIKEGAIVIDVGIN 111 (166)
T ss_dssp BC------TTTSCTTCEEEECCCE
T ss_pred cc------ccccCCCcEEEecCce
Confidence 22 2357899999999865
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.53 E-value=0.02 Score=45.81 Aligned_cols=88 Identities=14% Similarity=0.037 Sum_probs=54.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH-HHHHHHhhcccCCCCeeee---CCHHHHHhhcCCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGH---YTPRDFVLSIQRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~---~s~~e~v~~l~~advIil~vp~ 82 (505)
.+|.|||.|..|..-|+.|.+.|.+|++++..... ...+.+.+ +++.. .+.+++ ..+++|+.+..+
T Consensus 13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~------~i~~~~~~~~~~dl----~~~~lv~~at~d 82 (113)
T d1pjqa1 13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEG------MLTLVEGPFDETLL----DSCWLAIAATDD 82 (113)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTT------SCEEEESSCCGGGG----TTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcC------CceeeccCCCHHHh----CCCcEEeecCCC
Confidence 57999999999999999999999999999876543 33333322 12221 233332 337888877666
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
. .+..-+..... +..++|+...
T Consensus 83 ~-~~n~~i~~~a~---~~~ilVNv~D 104 (113)
T d1pjqa1 83 D-TVNQRVSDAAE---SRRIFCNVVD 104 (113)
T ss_dssp H-HHHHHHHHHHH---HTTCEEEETT
T ss_pred H-HHHHHHHHHHH---HcCCEEEeCC
Confidence 4 44433333222 3345565443
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=95.53 E-value=0.016 Score=53.45 Aligned_cols=81 Identities=11% Similarity=0.206 Sum_probs=56.7
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCC
Q 010637 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
-|+.|| | .+-+|.++|+.|++.|++|.+.+|++++++++.++... +.+++. +.+
T Consensus 6 gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~Dv~~ 63 (253)
T d1hxha_ 6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGE----------------------RSMFVRHDVSS 63 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCT----------------------TEEEECCCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC----------------------CeEEEEeecCC
Confidence 367777 4 57899999999999999999999999988877654311 122211 233
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
...++++++.+...+.+=|++|+....
T Consensus 64 ~~~~~~~~~~~~~~~g~iDilVnnAG~ 90 (253)
T d1hxha_ 64 EADWTLVMAAVQRRLGTLNVLVNNAGI 90 (253)
T ss_dssp HHHHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCCeEEecccc
Confidence 346677777776666566788876543
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=95.51 E-value=0.036 Score=44.72 Aligned_cols=113 Identities=19% Similarity=0.144 Sum_probs=85.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..||-|-|. |..|+--+..+.+.|-+|.. ..+|.+- +... .++-++++.+|+++.. .+|.-++.||+..
T Consensus 7 ~trVivQGiTG~~G~~ht~~m~~yGT~iVa-GVtPgkg------G~~~--~giPVf~tV~eAv~~~-~~d~SvIfVPp~~ 76 (121)
T d1oi7a1 7 ETRVLVQGITGREGQFHTKQMLTYGTKIVA-GVTPGKG------GMEV--LGVPVYDTVKEAVAHH-EVDASIIFVPAPA 76 (121)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEE-EECTTCT------TCEE--TTEEEESSHHHHHHHS-CCSEEEECCCHHH
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCceEe-eeecCCC------CcEE--ECCchHhhHHHHHHhc-CCeEEEEeeCHHH
Confidence 468999997 99999999999999987553 2344331 1110 1588999999999874 6999999999987
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+.+.+++.+...+ ..+++-+-.....|..++.+.++.++..+++
T Consensus 77 a~dAi~EAi~agI--~liv~ITEgVPv~Dm~~i~~~~~~~~~~liG 120 (121)
T d1oi7a1 77 AADAALEAAHAGI--PLIVLITEGIPTLDMVRAVEEIKALGSRLIG 120 (121)
T ss_dssp HHHHHHHHHHTTC--SEEEECCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhCCC--cEEEEecCCCCHHHHHHHHHHHHhCCCEEeC
Confidence 7788888776655 3566666677778888888888888877765
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.44 E-value=0.0046 Score=57.55 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=33.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|..+|.|||.|..|..+|..|+++|++|.+++++++
T Consensus 1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (292)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 345799999999999999999999999999999875
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.0037 Score=47.05 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=31.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
+++|||||.|..|+.|+..-.+-|++|.++|.+++
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 35899999999999999999999999999997754
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.38 E-value=0.023 Score=52.27 Aligned_cols=82 Identities=13% Similarity=0.213 Sum_probs=55.0
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+.|| | .+-+|..+|+.|++.|++|.+.+|+.++++++.++... ++ ..+..=+.+.+.
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~----~~----------------~~~~~Dvt~~~~ 65 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGP----AA----------------CAIALDVTDQAS 65 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCT----TE----------------EEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC----ce----------------EEEEeeCCCHHH
Confidence 56666 4 58999999999999999999999999988877654311 11 111111234456
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
++++++.+.....+=|++|+....
T Consensus 66 v~~~~~~~~~~~g~iDilVnnAg~ 89 (256)
T d1k2wa_ 66 IDRCVAELLDRWGSIDILVNNAAL 89 (256)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHhCCccEEEeeccc
Confidence 677776666655555777775443
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.0071 Score=53.00 Aligned_cols=35 Identities=17% Similarity=0.464 Sum_probs=32.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.++|.|||.|.-|..-|..|+++||+|++|++++.
T Consensus 43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence 45899999999999999999999999999999864
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=95.36 E-value=0.025 Score=51.94 Aligned_cols=83 Identities=10% Similarity=0.180 Sum_probs=58.0
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCC
Q 010637 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
-|+.+| |.+-+|..+|+.|++.|++|.+.+|++++.+++.++.... .++..+. +.+
T Consensus 6 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~--------------------~~~~~~~~Dv~~ 65 (251)
T d1zk4a1 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP--------------------DQIQFFQHDSSD 65 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT--------------------TTEEEEECCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCC--------------------CcEEEEEccCCC
Confidence 367777 5688999999999999999999999999887766542110 1222222 344
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.+.++++++.+...+.+=|++|++...
T Consensus 66 ~~~v~~~~~~~~~~~G~iDiLVnnAg~ 92 (251)
T d1zk4a1 66 EDGWTKLFDATEKAFGPVSTLVNNAGI 92 (251)
T ss_dssp HHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCceEEEecccc
Confidence 456777777777666556788876543
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=95.36 E-value=0.035 Score=51.13 Aligned_cols=84 Identities=15% Similarity=0.249 Sum_probs=56.7
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCC
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
|+.|| | .+-+|.++|+.|++.|++|.+.+|+++++++..++.... .. ..+++.+. |.+.
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~--------------~~---~~~~~~~~~Dvt~~ 67 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLET--------------AP---DAEVLTTVADVSDE 67 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--------------CT---TCCEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh--------------CC---CCeEEEEeccCCCH
Confidence 56666 5 578999999999999999999999999887765532110 00 12344332 2344
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+.++..++++...+.+=|++|+...
T Consensus 68 ~~v~~~~~~~~~~~G~iDiLVnnAG 92 (258)
T d1iy8a_ 68 AQVEAYVTATTERFGRIDGFFNNAG 92 (258)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCc
Confidence 5677777777666655678887654
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.34 E-value=0.25 Score=44.58 Aligned_cols=176 Identities=15% Similarity=0.131 Sum_probs=103.6
Q ss_pred CCcEEEEcccHHHHHHHHHHH-hCCCcEEEEe-----------CChHHHHHHHHhhccc-CCCCeeeeCCHHHHHhhcCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVA-EKGFPISVYN-----------RTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQR 72 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La-~~G~~V~v~d-----------r~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~v~~l~~ 72 (505)
..+|.|-|+|.+|..+|+.|. +.|..|...+ .+.+.+....+..... +..+.+. -+.+++... +
T Consensus 31 g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~ 107 (234)
T d1b26a1 31 KATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGER-ITNEELLEL--D 107 (234)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEE-ECHHHHHTS--C
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceecccccee-ecccccccc--c
Confidence 357999999999999999997 4698877553 2334444444332110 0001222 255666653 4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCC--CCCCHHHhhcCCccccCC
Q 010637 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG--VSGGEEGARHGPSLMPGG 150 (505)
Q Consensus 73 advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p--vsGg~~~a~~G~~im~gg 150 (505)
||+++-|--.+..- .+-.+.+. -++|+...|... +.+..+.|.++|+.|+.-- -+||...
T Consensus 108 ~DI~~PcA~~~~I~----~~~a~~l~-~~~I~e~AN~p~--t~~a~~~L~~rgI~~~PD~~aNaGGVi~----------- 169 (234)
T d1b26a1 108 VDILVPAALEGAIH----AGNAERIK-AKAVVEGANGPT--TPEADEILSRRGILVVPDILANAGGVTV----------- 169 (234)
T ss_dssp CSEEEECSCTTCBC----HHHHTTCC-CSEEECCSSSCB--CHHHHHHHHHTTCEEECHHHHTTHHHHH-----------
T ss_pred cceeecchhccccc----HHHHHHhh-hceEeecCCCCC--CHHHHHHHHHCCeEEechHHhcCCCeee-----------
Confidence 99988776554322 23344453 478998888764 3345678899999887432 2222210
Q ss_pred CHHHHHHHHHHHHHHhcccCCCCceEEeCCCcchhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHH
Q 010637 151 SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIF 224 (505)
Q Consensus 151 ~~ea~~~v~~ll~~iga~~~~~~~v~~vG~~G~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~ 224 (505)
..+ ++.+... ...+ -..-+.+.++..+...+.+.+..+++.+ +++.+...++
T Consensus 170 --s~~----E~~qn~~-------~~~w--------~~e~V~~~l~~~m~~~~~~v~~~a~~~~-~~~r~aA~~~ 221 (234)
T d1b26a1 170 --SYF----EWVQDLQ-------SFFW--------DLDQVRNALEKMMKGAFNDVMKVKEKYN-VDMRTAAYIL 221 (234)
T ss_dssp --HHH----HHHHHHT-------TCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHHH
T ss_pred --eeh----hcccccc-------hhcc--------cHHHHHHHHHHHHHHHHHHHHHHHHHhC-cCHHHHHHHH
Confidence 111 2223322 1111 1134566666667777788888899998 9988776654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.33 E-value=0.0071 Score=52.62 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=31.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~ 40 (505)
.||+|||.|..|...|..|+++|+ +|+++++++.
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 589999999999999999999999 5999998864
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.27 E-value=0.02 Score=49.45 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=57.4
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG-~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
++|.|||-+ .+|.+||..|+++|..|++++.... ++.+.... +|+||.++....-
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~---------------------~l~~~~~~---aDivi~a~G~~~~ 95 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA---------------------HLDEEVNK---GDILVVATGQPEM 95 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS---------------------SHHHHHTT---CSEEEECCCCTTC
T ss_pred ceEEEEecCCccchHHHHHHHhccCceEEEecccc---------------------cHHHHHhh---ccchhhccccccc
Confidence 479999985 5999999999999999999986532 33344444 9999999977643
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
++ ...+++|.+|||.+....
T Consensus 96 i~------~~~vk~g~iviDvgi~~~ 115 (170)
T d1a4ia1 96 VK------GEWIKPGAIVIDCGINYV 115 (170)
T ss_dssp BC------GGGSCTTCEEEECCCBC-
T ss_pred cc------cccccCCCeEeccCcccc
Confidence 22 236889999999988653
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=95.25 E-value=0.013 Score=54.14 Aligned_cols=88 Identities=17% Similarity=0.253 Sum_probs=57.5
Q ss_pred cCCCCcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE-
Q 010637 3 ASALSRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL- 79 (505)
Q Consensus 3 ~~~~~~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~- 79 (505)
++-+-|+.+| |.+-+|..+|+.|++.|++|.+.+|+.++.++..++... + . . .+++.+.
T Consensus 5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~-------------~-~-g---~~~~~~~~ 66 (260)
T d1h5qa_ 5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGK-------------E-F-G---VKTKAYQC 66 (260)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHH-------------H-H-T---CCEEEEEC
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-------------H-h-C---CceEEEEc
Confidence 3333467666 457799999999999999999999999877665543211 0 0 0 2333332
Q ss_pred -cCCCchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 80 -VKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 80 -vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+.+.+.++.+++++.....+=|++|++..
T Consensus 67 Dv~~~~~v~~~~~~~~~~~g~iDilVnnAg 96 (260)
T d1h5qa_ 67 DVSNTDIVTKTIQQIDADLGPISGLIANAG 96 (260)
T ss_dssp CTTCHHHHHHHHHHHHHHSCSEEEEEECCC
T ss_pred cCCCHHHHHHHHHHHHHHhCCCcEeccccc
Confidence 23445667777777766655677777654
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.14 E-value=0.029 Score=51.78 Aligned_cols=87 Identities=13% Similarity=0.262 Sum_probs=59.7
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCC
Q 010637 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
-|+++| |.+-+|.++|+.|++.|++|.+.+|+.++++++.++....+ . + . .++..+. +.+
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~------~-~------~---~~~~~~~~Dvt~ 68 (264)
T d1spxa_ 5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAG------V-S------E---QNVNSVVADVTT 68 (264)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------C-C------G---GGEEEEECCTTS
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------C-C------c---CceEEEEccCCC
Confidence 478888 56899999999999999999999999998887765432110 0 0 0 1233332 344
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
...++++++.+.....+=|++|++...
T Consensus 69 ~~~v~~~~~~~~~~~g~iDilvnnAG~ 95 (264)
T d1spxa_ 69 DAGQDEILSTTLGKFGKLDILVNNAGA 95 (264)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCC-
T ss_pred HHHHHHHHHHHHHHhCCCCEeeccccc
Confidence 456777777777666666888887554
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.12 E-value=0.014 Score=51.56 Aligned_cols=70 Identities=14% Similarity=0.087 Sum_probs=48.2
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEE--EeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEc
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISV--YNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G~~V~v--~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~v 80 (505)
|++|-|.| .|.+|+.++..|+++||+|.+ ..|++++...+.... .+.. ..+.+.+.+.++.+|.|+.+.
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~~~d~vi~~a 76 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEA------DVFIGDITDADSINPAFQGIDALVILT 76 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCT------TEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCc------EEEEeeeccccccccccccceeeEEEE
Confidence 57899998 699999999999999987554 568887765543211 1111 235555555556688888775
Q ss_pred C
Q 010637 81 K 81 (505)
Q Consensus 81 p 81 (505)
.
T Consensus 77 ~ 77 (252)
T d2q46a1 77 S 77 (252)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=95.10 E-value=0.032 Score=52.19 Aligned_cols=84 Identities=13% Similarity=0.209 Sum_probs=55.0
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCC
Q 010637 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
|+.|| |.|-+|.++|+.|++.|++|.+.+|+.++.++..++.... .. .++..+. +.+.
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~--------------~g----~~~~~~~~D~~~~ 87 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQ--------------TG----NKVHAIQCDVRDP 87 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--------------HS----SCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHh--------------cC----CceEEEEecccCh
Confidence 77777 6899999999999999999999999998877665432110 00 1222222 2333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..++..++.+......=+++|++...
T Consensus 88 ~~v~~~~~~~~~~~g~iDilvnnAg~ 113 (294)
T d1w6ua_ 88 DMVQNTVSELIKVAGHPNIVINNAAG 113 (294)
T ss_dssp HHHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred HHHHHHhhhhhhhccccchhhhhhhh
Confidence 44555556665555555777776543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.06 E-value=0.028 Score=51.62 Aligned_cols=84 Identities=19% Similarity=0.286 Sum_probs=55.5
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCC
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
|+.+| | .+-+|..+|+.|++.|++|.+.+|+.++.++..++... -. . .+++.+. +.+.
T Consensus 6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~--------------~~-g---~~~~~~~~Dv~~~ 67 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTE--------------KY-G---VETMAFRCDVSNY 67 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------------HH-C---CCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH--------------Hh-C---CcEEEEEccCCCH
Confidence 56666 4 57899999999999999999999999887765543111 00 0 2333332 2344
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..++.+++++...+.+=|++|++...
T Consensus 68 ~~v~~~~~~~~~~~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 68 EEVKKLLEAVKEKFGKLDTVVNAAGI 93 (251)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 56677777776655555788876543
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.03 E-value=0.091 Score=40.85 Aligned_cols=86 Identities=13% Similarity=0.033 Sum_probs=58.8
Q ss_pred chhhhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhh
Q 010637 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDK 262 (505)
Q Consensus 183 ~g~~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~ 262 (505)
.+.++|++.|.+.+..+.+++|.+.++++.| ++..++.+.+.. .....+ ..+.....|++. -+-||
T Consensus 3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g-~d~~~v~~~~~~--d~~~~~-------~~~~pg~g~GG~----ClpKD 68 (98)
T d1dlja1 3 EAEAVKLFANTYLALRVAYFNELDTYAESRK-LNSHMIIQGISY--DDRIGM-------HYNNPSFGYGGY----SLPKD 68 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHT--STTTCS-------SSCCCCSSCCSS----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHh--ccccCC-------ccccCCCCcccc----cCccc
Confidence 4789999999999999999999999999998 999988877631 111111 112221234443 23344
Q ss_pred hCCCchHHHHHHHHHHcCCCcchHHHHH
Q 010637 263 TGMKGTGKWTVQQAAELSVAAPTIAASL 290 (505)
Q Consensus 263 ~~~kgtg~~~~~~A~~~gvp~p~i~~av 290 (505)
. ++. .+.+.|++.+++.++.
T Consensus 69 ~-------~al-~~~~~~~~~~ll~~~~ 88 (98)
T d1dlja1 69 T-------KQL-LANYNNIPQTLIEAIV 88 (98)
T ss_dssp H-------HHH-HHHHTTSSCSHHHHHH
T ss_pred H-------HHH-HHHhcCCCcHHHHHHH
Confidence 3 234 4677899999888653
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=95.02 E-value=0.036 Score=47.88 Aligned_cols=36 Identities=14% Similarity=0.332 Sum_probs=28.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEE-EEeCChHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG-FPIS-VYNRTTSK 41 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G-~~V~-v~dr~~~~ 41 (505)
|.+|||-|.|++|+.+.+.+.+++ .+|. +.|+++..
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~ 38 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDF 38 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSH
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHH
Confidence 458999999999999999988776 5655 44666543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.02 E-value=0.083 Score=48.42 Aligned_cols=86 Identities=15% Similarity=0.219 Sum_probs=57.9
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCC
Q 010637 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
-|+.+| |.+-+|.++|+.|++.|++|.+.+|++++++++.++....+ . ..+++.+. +.+
T Consensus 10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~--------------~---~~~~~~~~~Dls~ 72 (257)
T d1xg5a_ 10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG--------------Y---PGTLIPYRCDLSN 72 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------C---SSEEEEEECCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------C---CceEEEEEccCCC
Confidence 366666 56899999999999999999999999999888766432110 0 02333322 344
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.+.++.+++.+...+.+=|++|++...
T Consensus 73 ~~~v~~~v~~~~~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 73 EEDILSMFSAIRSQHSGVDICINNAGL 99 (257)
T ss_dssp HHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEecccc
Confidence 456777777776655555677776543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.98 E-value=0.014 Score=50.43 Aligned_cols=73 Identities=12% Similarity=0.062 Sum_probs=48.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcE-EEEeCChHHHHHHHHhhcccCCCCeeee--CCHHHHHhhcC--CCcEEEEEcC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGH--YTPRDFVLSIQ--RPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~--~s~~e~v~~l~--~advIil~vp 81 (505)
.+|.|+|+|.+|...+..+...|..+ .+.++++++.+.+.+.+... +.-. .+..+.+.++. ..|+||.++.
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~----~i~~~~~~~~~~i~~~t~gg~D~vid~~G 105 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH----VINSKTQDPVAAIKEITDGGVNFALESTG 105 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSE----EEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeE----EEeCCCcCHHHHHHHHcCCCCcEEEEcCC
Confidence 36999999999999998888888754 57799999988877665421 1111 22333333221 3577887776
Q ss_pred CC
Q 010637 82 AG 83 (505)
Q Consensus 82 ~~ 83 (505)
..
T Consensus 106 ~~ 107 (174)
T d1f8fa2 106 SP 107 (174)
T ss_dssp CH
T ss_pred cH
Confidence 54
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=94.95 E-value=0.025 Score=51.83 Aligned_cols=113 Identities=8% Similarity=0.045 Sum_probs=70.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEe-CC----------hHHHHHHHHhh--------cccCCCCeeeeCCHHHHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYN-RT----------TSKVDETLDRA--------HREGQLPLTGHYTPRDFV 67 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~d-r~----------~~~~~~l~~~~--------~~~g~~~i~~~~s~~e~v 67 (505)
.+|.|-|+|.+|..+|+.|.+.|.+|..++ .+ .+.+.+..+.. ... .+.....+.+++.
T Consensus 32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~ 109 (242)
T d1v9la1 32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTK--DNAEFVKNPDAIF 109 (242)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHT--SCCCCCSSTTGGG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhc--cCceEeeCcchhc
Confidence 579999999999999999999999987554 22 12222111100 000 0123334455555
Q ss_pred hhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 68 ~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.. .||+++-|-..+.... +-.+.+ +-++|+...|... +.+..+.+.++|+.|+.
T Consensus 110 ~~--~~DIliPcA~~~~I~~----~~a~~i-~ak~IvegAN~p~--t~~a~~~L~~rgI~~~P 163 (242)
T d1v9la1 110 KL--DVDIFVPAAIENVIRG----DNAGLV-KARLVVEGANGPT--TPEAERILYERGVVVVP 163 (242)
T ss_dssp GC--CCSEEEECSCSSCBCT----TTTTTC-CCSEEECCSSSCB--CHHHHHHHHTTTCEEEC
T ss_pred cc--cccEEeecchhccccH----HHHHhc-ccCEEEecCCCCC--ChhHHHHHHhCCeEEeC
Confidence 42 4899988876553222 222344 3478998888764 44556788999998874
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=94.94 E-value=0.0099 Score=54.63 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=30.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
+|.|||.|.+|.+.|..|+++|++|+++|+++
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 59999999999999999999999999999874
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=94.90 E-value=0.041 Score=50.88 Aligned_cols=84 Identities=10% Similarity=0.087 Sum_probs=55.4
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
-|+.+| |.+-+|..+|+.|++.|++|.+.+|++++.+++.++....+ ++ ..+..=+.+.+
T Consensus 6 gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~--~~----------------~~~~~Dv~~~~ 67 (268)
T d2bgka1 6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPD--VI----------------SFVHCDVTKDE 67 (268)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTT--TE----------------EEEECCTTCHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCC--ce----------------EEEEccCCCHH
Confidence 467777 56889999999999999999999999998888776532110 01 11111123445
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st 108 (505)
.++.+++.+.....+=|++|++..
T Consensus 68 ~v~~~~~~~~~~~g~iD~lVnnAG 91 (268)
T d2bgka1 68 DVRNLVDTTIAKHGKLDIMFGNVG 91 (268)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCcceeccccc
Confidence 666667666665555567776543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=94.88 E-value=0.028 Score=51.26 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=52.5
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCC
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
|+.+| | .+-+|..+|+.|+++|++|.+.+|+.+++++..++.. .+++.+. +.+.
T Consensus 6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dls~~ 63 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE----------------------AEAIAVVADVSDP 63 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC----------------------SSEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC----------------------CceEEEEecCCCH
Confidence 45555 5 5779999999999999999999999998877665421 1122211 2333
Q ss_pred chHHHHHHHHHhcCCCCcEEEecC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~s 107 (505)
+.+++.++.+...+.+=+++|...
T Consensus 64 ~~i~~~~~~i~~~~g~iDiLinnA 87 (241)
T d2a4ka1 64 KAVEAVFAEALEEFGRLHGVAHFA 87 (241)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEGG
T ss_pred HHHHHHHHHHHHHhCCccEecccc
Confidence 456666666666555557777653
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.88 E-value=0.039 Score=51.12 Aligned_cols=85 Identities=15% Similarity=0.275 Sum_probs=57.3
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCC
Q 010637 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
|+.|| |.+-+|.++|+.|++.|++|.+.+|++++++++.++....+ . + . .++..+. +.+.
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~------~-~------~---~~~~~~~~Dvs~~ 69 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSG------V-S------E---KQVNSVVADVTTE 69 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------C-C------G---GGEEEEECCTTSH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------C-C------C---CceEEEEccCCCH
Confidence 56666 46889999999999999999999999998887766432110 0 0 0 1233333 2344
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+.++.+++.+.....+=|++|++..
T Consensus 70 ~~v~~~~~~~~~~~g~iDilvnnAG 94 (272)
T d1xkqa_ 70 DGQDQIINSTLKQFGKIDVLVNNAG 94 (272)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCceEEEeCCc
Confidence 5677777777666555577877644
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.87 E-value=0.068 Score=49.11 Aligned_cols=84 Identities=14% Similarity=0.176 Sum_probs=54.9
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCC
Q 010637 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 7 ~~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
-|+.+| |.+-+|..+|+.|++.|++|.+.+|+++++++..++.... . .++..+. +.+
T Consensus 8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~----------------~---~~~~~~~~Dv~~ 68 (259)
T d1xq1a_ 8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK----------------G---FQVTGSVCDASL 68 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CceEEEeccCCC
Confidence 356666 5688999999999999999999999999888776542211 0 2222222 233
Q ss_pred CchHHHHHHHHHhcC-CCCcEEEecCCC
Q 010637 83 GSPVDQTIAALSEHM-SPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l-~~g~iIId~st~ 109 (505)
...++.+++.+...+ .+=+++|++...
T Consensus 69 ~~~v~~~~~~~~~~~~g~idilvnnAG~ 96 (259)
T d1xq1a_ 69 RPEREKLMQTVSSMFGGKLDILINNLGA 96 (259)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCcccccccccc
Confidence 345666666665544 234677776543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.86 E-value=0.015 Score=50.27 Aligned_cols=92 Identities=10% Similarity=0.039 Sum_probs=61.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|.|.|. |.+|....+.+...|.+|.+.++++++.+.+.+.+... +.-..+..+.....+.+|+||-++.+ .
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~----~i~~~~~~~~~~~~~g~D~v~d~~G~--~ 102 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEE----AATYAEVPERAKAWGGLDLVLEVRGK--E 102 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSE----EEEGGGHHHHHHHTTSEEEEEECSCT--T
T ss_pred CEEEEEeccccchhhhhhhhcccccccccccccccccccccccccce----eeehhhhhhhhhccccccccccccch--h
Confidence 36888895 99999988888888999999999999888877766432 22223333334444568999987642 3
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (505)
+ +.....+.++-.++..+.
T Consensus 103 ~----~~~~~~l~~~G~~v~~G~ 121 (171)
T d1iz0a2 103 V----EESLGLLAHGGRLVYIGA 121 (171)
T ss_dssp H----HHHHTTEEEEEEEEEC--
T ss_pred H----HHHHHHHhcCCcEEEEeC
Confidence 3 334455666666666553
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.065 Score=49.03 Aligned_cols=87 Identities=14% Similarity=0.239 Sum_probs=58.3
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCC
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
|+.+| | .+-+|.++|+.|++.|++|.+.+|+.++.++..++.... ....++..+. +.+.
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~-----------------~~~~~~~~~~~Dv~~~ 66 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ-----------------FEPQKTLFIQCDVADQ 66 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT-----------------SCGGGEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh-----------------cCCCcEEEEEeecCCH
Confidence 56666 5 578999999999999999999999999887766542110 0002233332 3444
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
+.++++++.+...+.+=|++|+......
T Consensus 67 ~~v~~~~~~~~~~~G~iDilVnnAg~~~ 94 (254)
T d2gdza1 67 QQLRDTFRKVVDHFGRLDILVNNAGVNN 94 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHHHcCCcCeecccccccc
Confidence 5677777777665555578887765543
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.82 E-value=0.011 Score=52.30 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=30.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~ 39 (505)
++|.|||.|.-|...|..|+++|+ +|+++++++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 479999999999999999999996 799999875
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=94.81 E-value=0.07 Score=48.43 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=57.1
Q ss_pred cEEEE-cc-cHHHHHHHHHHHhCCCc-------EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEE
Q 010637 8 RIGLA-GL-AVMGQNLALNVAEKGFP-------ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 8 ~IgII-Gl-G~MG~~lA~~La~~G~~-------V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil 78 (505)
+|.+| |. +-+|..+|+.|++.|++ |.+++|++++++++.++....| .++..+
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g-------------------~~~~~~ 62 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG-------------------ALTDTI 62 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT-------------------CEEEEE
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC-------------------CcEEEE
Confidence 56655 54 77999999999999997 8999999998887765432110 222222
Q ss_pred E--cCCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 79 L--VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~--vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
. +.+.+.++++++.+.....+=|++|+....
T Consensus 63 ~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAg~ 95 (240)
T d2bd0a1 63 TADISDMADVRRLTTHIVERYGHIDCLVNNAGV 95 (240)
T ss_dssp ECCTTSHHHHHHHHHHHHHHTSCCSEEEECCCC
T ss_pred EecCCCHHHHHHHHHHHHHHcCCcceeeccccc
Confidence 2 344456777777777766666788876543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=94.80 E-value=0.039 Score=50.94 Aligned_cols=73 Identities=18% Similarity=0.133 Sum_probs=47.8
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHH-----HHHHHHhhcccCCCCeee----eCCHHHHHhhcCCCcE
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSK-----VDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRS 75 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~-----~~~l~~~~~~~g~~~i~~----~~s~~e~v~~l~~adv 75 (505)
++||-|+| +|.+|..++..|.++||+|++.+|++.. .+.+..... . ++.. ..+.+.+.+.+..++.
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~---~v~~v~~d~~d~~~~~~~~~~~~~ 78 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQ-L---GAKLIEASLDDHQRLVDALKQVDV 78 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHT-T---TCEEECCCSSCHHHHHHHHTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhcc-C---CcEEEEeecccchhhhhhccCcch
Confidence 56899998 5999999999999999999999987532 222111110 0 1221 1345555555556777
Q ss_pred EEEEcCC
Q 010637 76 VIILVKA 82 (505)
Q Consensus 76 Iil~vp~ 82 (505)
++.+++.
T Consensus 79 ~~~~~~~ 85 (312)
T d1qyda_ 79 VISALAG 85 (312)
T ss_dssp EEECCCC
T ss_pred hhhhhhh
Confidence 7777654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.73 E-value=0.011 Score=56.97 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=32.2
Q ss_pred CCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 4 SALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 4 ~~~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
++.|||-|.| .|.+|+.|+..|.++||+|+++|+...
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~ 50 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN 50 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCc
Confidence 4567999997 699999999999999999999987543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.69 E-value=0.09 Score=45.26 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=39.0
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcc
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR 51 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~ 51 (505)
.|.|+|+|-+|...++.+...|. +|.+.|+++++.+...+.++.
T Consensus 32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~ 76 (176)
T d1d1ta2 32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT 76 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred EEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc
Confidence 59999999999999999999995 799999999999887776653
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.68 E-value=0.011 Score=56.44 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=32.2
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChH
Q 010637 4 SALSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTS 40 (505)
Q Consensus 4 ~~~~~IgIIGlG~MG~~lA~~La~~G--~~V~v~dr~~~ 40 (505)
..++||+|||+|.-|...|..|++.| ++|.+++++..
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 44678999999999999999998876 69999999864
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.68 E-value=0.011 Score=53.89 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=31.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
+||.|||.|.-|..-|..|+++|++|.++++++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999999775
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.67 E-value=0.0038 Score=51.54 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=49.5
Q ss_pred cEEEEcccHHHHHHHHHHH-hCCCcEEE-EeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 8 RIGLAGLAVMGQNLALNVA-EKGFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La-~~G~~V~v-~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|.|+|+|.+|..++..+. +.||++.+ +|-++++...... | .++...+.+++++.. ..++.++++|. ..
T Consensus 5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~-----G-i~V~~~~~l~~~~~~--~i~iai~~i~~-~~ 75 (126)
T d2dt5a2 5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVR-----G-GVIEHVDLLPQRVPG--RIEIALLTVPR-EA 75 (126)
T ss_dssp EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEET-----T-EEEEEGGGHHHHSTT--TCCEEEECSCH-HH
T ss_pred eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEEC-----C-EEEecHHHHHHHHhh--cccEEEEeCCH-HH
Confidence 7999999999999998765 35787765 5888865322111 0 122333444444432 36777778776 35
Q ss_pred HHHHHHHHHh
Q 010637 86 VDQTIAALSE 95 (505)
Q Consensus 86 v~~vl~~l~~ 95 (505)
.+++++.+.+
T Consensus 76 ~~~I~d~l~~ 85 (126)
T d2dt5a2 76 AQKAADLLVA 85 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=94.67 E-value=0.021 Score=49.89 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=51.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCC-CcEEEEe-CCh-HH-HHHHHHhhcccCCCCee-eeCCHHHHHhhcCCCcEEEEE
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKG-FPISVYN-RTT-SK-VDETLDRAHREGQLPLT-GHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G-~~V~v~d-r~~-~~-~~~l~~~~~~~g~~~i~-~~~s~~e~v~~l~~advIil~ 79 (505)
+.||||||+ |..|.-|.+.|.+|- +++.... ++. .+ ........... ... .....++.... +|++|++
T Consensus 5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~Dvvf~a 78 (183)
T d2cvoa1 5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQ---DLPNLVAVKDADFSN---VDAVFCC 78 (183)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTS---CCCCCBCGGGCCGGG---CSEEEEC
T ss_pred ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCcccccccccccc---ccccchhhhhhhhcc---cceeeec
Confidence 468999996 999999999999874 4655443 222 11 22221111000 111 11122223334 8999999
Q ss_pred cCCCchHHHHHHHHHhcCCCCcEEEecCCCCc
Q 010637 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (505)
+|.+.. ... .+.+.+...+||.+....
T Consensus 79 lp~~~s-~~~----~~~l~~~~~~v~~~~~~~ 105 (183)
T d2cvoa1 79 LPHGTT-QEI----IKGLPQELKIVDLSADFR 105 (183)
T ss_dssp CSSSHH-HHH----HHTSCSSCEEEECSSTTT
T ss_pred cccchH-HHH----HHHHHhcCcccccchhhh
Confidence 999743 333 344444445555555443
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.62 E-value=0.013 Score=55.90 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=32.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
++||.|||+|.-|...|..|+++|++|.+++++..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 46899999999999999999999999999998853
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=94.61 E-value=0.012 Score=54.63 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=31.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.||.|||.|.-|...|..|+++|++|.++++++
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 479999999999999999999999999999875
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=94.60 E-value=0.067 Score=49.15 Aligned_cols=118 Identities=12% Similarity=-0.014 Sum_probs=78.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
.+|-=+|+|. | .++..+++.|.+|+++|.++..++..++.....+ .+. ....+..+.... ...|+|+..+.. ..
T Consensus 122 ~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~-~~~~~~~~d~~~~~~~-~~fD~V~ani~~-~~ 196 (254)
T d2nxca1 122 DKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNG-VRPRFLEGSLEAALPF-GPFDLLVANLYA-EL 196 (254)
T ss_dssp CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTT-CCCEEEESCHHHHGGG-CCEEEEEEECCH-HH
T ss_pred CEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcC-CceeEEeccccccccc-cccchhhhcccc-cc
Confidence 4688899986 4 3566788889999999999998877665433221 122 234566554432 347988876654 35
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
..+++..+...|+||-.++- |.........+.+.+.+.|...+.
T Consensus 197 l~~l~~~~~~~LkpGG~lil-Sgil~~~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 197 HAALAPRYREALVPGGRALL-TGILKDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp HHHHHHHHHHHEEEEEEEEE-EEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEE-EecchhhHHHHHHHHHHCCCEEEE
Confidence 67777888888888766553 223334556677778888876654
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.59 E-value=0.0023 Score=57.70 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=24.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPIS 33 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~ 33 (505)
|||.|||.|.+|...|..|+++|++|+
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~ 27 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVL 27 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTS
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCce
Confidence 689999999999999999999998643
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.54 E-value=0.048 Score=49.65 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=35.4
Q ss_pred cEEEE-cc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh
Q 010637 8 RIGLA-GL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA 49 (505)
Q Consensus 8 ~IgII-Gl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~ 49 (505)
|+.+| |. +-+|.++|+.|++.|++|.+.+|++++++++.++.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~ 49 (242)
T d1cyda_ 6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC 49 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc
Confidence 45555 64 77999999999999999999999999888877654
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.54 E-value=0.051 Score=50.39 Aligned_cols=85 Identities=15% Similarity=0.283 Sum_probs=54.9
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCCC
Q 010637 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (505)
Q Consensus 8 ~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~~ 83 (505)
|+.|| |.+-+|.++|+.|++.|++|.+.+|++++++++.++....+ . . . .++..+. +.+.
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~---~----~------~---~~~~~~~~Dv~~~ 68 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAG---V----P------A---EKINAVVADVTEA 68 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---C----C------G---GGEEEEECCTTSH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC---C----C------C---cceEEEEeeCCCH
Confidence 56666 45789999999999999999999999998887765432110 0 0 0 1122222 2344
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
..++++++.+...+.+=|++|+...
T Consensus 69 ~~v~~~~~~~~~~~G~iDilVnnAG 93 (274)
T d1xhla_ 69 SGQDDIINTTLAKFGKIDILVNNAG 93 (274)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHcCCceEEEeecc
Confidence 5666777666665555567776543
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.41 E-value=0.04 Score=51.02 Aligned_cols=86 Identities=13% Similarity=0.193 Sum_probs=59.0
Q ss_pred CcEEEE--cccHHHHHHHHHHHhC-CCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 7 SRIGLA--GLAVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgII--GlG~MG~~lA~~La~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
++|+|| |.+-+|..+|+.|++. |+.|.+++|+.++.++..++....+ . .+.++.+=+.+.
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--------------~---~~~~~~~Dvs~~ 65 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--------------L---SPRFHQLDIDDL 65 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--------------C---CCEEEECCTTCH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--------------C---cEEEEEEecCCH
Confidence 589999 6789999999999975 9999999999999887765432110 0 133333334555
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+.++++++.+.....+=|++|+....
T Consensus 66 ~sv~~~~~~~~~~~g~iDiLVnNAGi 91 (275)
T d1wmaa1 66 QSIRALRDFLRKEYGGLDVLVNNAGI 91 (275)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCc
Confidence 56777777776655444777776543
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.41 E-value=0.013 Score=49.84 Aligned_cols=91 Identities=11% Similarity=0.139 Sum_probs=52.4
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCc---EEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 8 RIGLAGL-AVMGQNLALNVAEKGFP---ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~G~~---V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
||||||+ |..|.-|.+.|.++.|. +.....+...-+.+..... ........++... ..|+++++.|.+
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~-----~~~~~~~~~~~~~---~~d~~f~~~~~~ 74 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQ-----DITIEETTETAFE---GVDIALFSAGSS 74 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTE-----EEEEEECCTTTTT---TCSEEEECSCHH
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCC-----cccccccchhhhh---hhhhhhhccCcc
Confidence 7999997 99999999999988763 3333322111000000000 1112222222223 389999999886
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
.. ......+ ..+|..|||.|+.+
T Consensus 75 ~s-~~~~~~~---~~~~~~VIDlSsdf 97 (154)
T d2gz1a1 75 TS-AKYAPYA---VKAGVVVVDNTSYF 97 (154)
T ss_dssp HH-HHHHHHH---HHTTCEEEECSSTT
T ss_pred ch-hhHHhhh---ccccceehhcChhh
Confidence 33 3333333 34789999999875
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.36 E-value=0.026 Score=47.90 Aligned_cols=44 Identities=9% Similarity=0.179 Sum_probs=38.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~ 50 (505)
.+|.|+|+|.+|...+..+...|.+|.+.++++++.+.+.+.+.
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga 72 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA 72 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCc
Confidence 47999999999999888888899999999999999887766543
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=94.34 E-value=0.11 Score=47.61 Aligned_cols=83 Identities=13% Similarity=0.241 Sum_probs=51.7
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChH-HHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cC
Q 010637 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VK 81 (505)
Q Consensus 7 ~~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp 81 (505)
-|+.|| |.+-+|..+|+.|++.|++|.+.+|+.+ ..+.+.++.... ..+++.+. +.
T Consensus 7 gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~-------------------g~~~~~~~~Dvt 67 (261)
T d1geea_ 7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV-------------------GGEAIAVKGDVT 67 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------------TCEEEEEECCTT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhc-------------------CCcEEEEEccCC
Confidence 467777 5688999999999999999999999864 444444321110 02333222 23
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
+.+.++++++.+...+.+=|++|+...
T Consensus 68 ~~~~v~~~~~~~~~~~G~iDiLVnnAG 94 (261)
T d1geea_ 68 VESDVINLVQSAIKEFGKLDVMINNAG 94 (261)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHhCCCCEeeccce
Confidence 334566666666655545567776543
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.30 E-value=0.052 Score=49.24 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=35.9
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh
Q 010637 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (505)
Q Consensus 7 ~~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~ 48 (505)
-|++|| |.+-+|.++|+.|+++|++|.+.+|+.++.++..++
T Consensus 5 GKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~ 48 (248)
T d2o23a1 5 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK 48 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH
Confidence 467777 568899999999999999999999999887776654
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=94.24 E-value=0.03 Score=50.70 Aligned_cols=66 Identities=8% Similarity=0.062 Sum_probs=42.8
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE
Q 010637 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (505)
Q Consensus 9 IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~ 79 (505)
+-|.| .+-+|..+|+.|++.|++|.+.+|+++.+++...+.. .....+..+++++.+.+-|++|-.
T Consensus 7 ~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~-----~~Dv~~~~~~~~~~~g~iD~lVnn 73 (234)
T d1o5ia_ 7 VLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYV-----VCDLRKDLDLLFEKVKEVDILVLN 73 (234)
T ss_dssp EEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEE-----ECCTTTCHHHHHHHSCCCSEEEEC
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEE-----EcchHHHHHHHHHHhCCCcEEEec
Confidence 44446 4789999999999999999999999877654321110 001123445555655566666654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.23 E-value=0.19 Score=43.02 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=37.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~ 50 (505)
.+|.|+|+|.+|...++.+...|. .|.+.|+++++.+...+.+.
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga 74 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA 74 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC
Confidence 369999999999999999999997 58889999999877666553
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.20 E-value=0.046 Score=51.23 Aligned_cols=113 Identities=8% Similarity=0.022 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEe-----------CChHHHHHHHHhhccc-CCCCeeeeCCHHHHHhhcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYN-----------RTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~d-----------r~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~v~~l~~ad 74 (505)
++|.|-|.|++|...|+.|.+.|..|..++ .+.+.+.+........ +..... -+..++... .||
T Consensus 37 ktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~D 112 (293)
T d1hwxa1 37 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAK--IYEGSILEV--DCD 112 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSC--BCCSCGGGC--CCS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccc--cCCcccccC--Ccc
Confidence 579999999999999999999999987553 3445555554432210 000001 122233331 489
Q ss_pred EEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+++-|-..+.... +-.+.+ .-++|+...|... |.+..+.|.++|+.|+.
T Consensus 113 IliPaA~~~~I~~----~~a~~l-~ak~I~EgAN~P~--t~eA~~~L~~~gI~viP 161 (293)
T d1hwxa1 113 ILIPAASEKQLTK----SNAPRV-KAKIIAEGANGPT--TPQADKIFLERNIMVIP 161 (293)
T ss_dssp EEEECSSSSCBCT----TTGGGC-CCSEEECCSSSCB--CHHHHHHHHHTTCEEEC
T ss_pred EEeeccccccccH----HHHHHH-hhCEEeccCCCCC--CcchHHHHHHCCCEEeC
Confidence 9888765543222 223334 3468998888763 44556788999998875
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=94.15 E-value=0.08 Score=48.31 Aligned_cols=78 Identities=9% Similarity=0.098 Sum_probs=51.0
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
|+.+| |.+-+|..+|+.|++.|++|.+.+|+++..+. .+... ...+-+=|.+...
T Consensus 6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~-~~~~~----------------------~~~~~~Dv~~~~~ 62 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEV-AEAIG----------------------GAFFQVDLEDERE 62 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHH-HHHHT----------------------CEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHcC----------------------CeEEEEeCCCHHH
Confidence 55666 46899999999999999999999999876432 22210 1112112334456
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC
Q 010637 86 VDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (505)
++++++++...+.+=|++|+...
T Consensus 63 v~~~~~~~~~~~G~iDiLVnnAG 85 (248)
T d2d1ya1 63 RVRFVEEAAYALGRVDVLVNNAA 85 (248)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHhcCCCCeEEEeCc
Confidence 67777776665555577777543
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.15 E-value=0.1 Score=47.28 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|.|||+|.+|+.+|.+|++.|. +++++|.+.=....+..+.. .....+-.-+....+.+..+ .+++-+..++...
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~-np~~~i~~~~~~~ 109 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRI-NPHIAITPVNALL 109 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEECSCC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHh-hcccchhhhhhhh
Confidence 579999999999999999999997 78899876532222221100 00000000111122222211 2677777776642
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
.-... .. .+...++++|++.. +.....+.+.+.+.++.|+.+.+.|
T Consensus 110 ~~~~~-~~---~~~~~divid~~d~-~~~~~~in~~~~~~~ip~i~g~~~~ 155 (247)
T d1jw9b_ 110 DDAEL-AA---LIAEHDLVLDCTDN-VAVRNQLNAGCFAAKVPLVSGAAIR 155 (247)
T ss_dssp CHHHH-HH---HHHTSSEEEECCSS-HHHHHHHHHHHHHHTCCEEEEEEEB
T ss_pred hhccc-cc---cccccceeeeccch-hhhhhhHHHHHHHhCCCcccccccc
Confidence 22222 22 23456899998754 3333345556666788888765544
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.11 E-value=0.038 Score=47.15 Aligned_cols=91 Identities=11% Similarity=0.054 Sum_probs=57.2
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCC---H-HHHHhhc--CCCcEEEEE
Q 010637 8 RIGLAGL-AVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYT---P-RDFVLSI--QRPRSVIIL 79 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s---~-~e~v~~l--~~advIil~ 79 (505)
+|.|+|+ |.+|...+..+...|. +|++.++++++.+.+.+.+.. .....+ + ++..+.. ...|+||.+
T Consensus 30 ~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~-----~~i~~~~~~~~~~~~~~~~~~~~d~vid~ 104 (170)
T d1jvba2 30 TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD-----YVINASMQDPLAEIRRITESKGVDAVIDL 104 (170)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS-----EEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred EEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc-----eeeccCCcCHHHHHHHHhhcccchhhhcc
Confidence 6999995 9999998888887884 899999999998887776542 122222 2 2222211 236788877
Q ss_pred cCCCchHHHHHHHHHhcCCCCcEEEecC
Q 010637 80 VKAGSPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~s 107 (505)
+.... .++.....+.++-.++..+
T Consensus 105 ~g~~~----~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 105 NNSEK----TLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp CCCHH----HHTTGGGGEEEEEEEEECC
T ss_pred cccch----HHHhhhhhcccCCEEEEec
Confidence 75532 2333444555555555443
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.11 E-value=0.024 Score=49.81 Aligned_cols=33 Identities=9% Similarity=0.047 Sum_probs=30.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
-+|.|||.|.-|...|..|+++|++|.|+++++
T Consensus 6 yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 6 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 368999999999999999999999999999885
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.07 E-value=0.061 Score=46.28 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=50.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeee--C-CHHHHHhhc--CCCcEEEEEc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGH--Y-TPRDFVLSI--QRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~--~-s~~e~v~~l--~~advIil~v 80 (505)
.+|.|+|+|.+|...++.+...|. +|.+.|+++++.+...+.+... -+... + ..++..... ...|++|.++
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~---~i~~~~~d~~~~~~~~~~~~~G~d~vid~~ 105 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE---CLNPKDYDKPIYEVICEKTNGGVDYAVECA 105 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE---EECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcE---EEcCCCchhHHHHHHHHhcCCCCcEEEEcC
Confidence 369999999999999999998886 6889999999998877765431 01001 1 123332221 2468888877
Q ss_pred CCC
Q 010637 81 KAG 83 (505)
Q Consensus 81 p~~ 83 (505)
...
T Consensus 106 g~~ 108 (174)
T d1p0fa2 106 GRI 108 (174)
T ss_dssp CCH
T ss_pred CCc
Confidence 553
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=94.01 E-value=0.02 Score=53.41 Aligned_cols=33 Identities=30% Similarity=0.581 Sum_probs=30.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~ 39 (505)
++|.|||.|.+|.+.|..|+++|. +|+++|+++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 479999999999999999999995 799999874
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.01 E-value=0.019 Score=52.25 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=31.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~ 40 (505)
++|.|||.|.-|..+|..|+++|. +|.+++++++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 589999999999999999999995 8999999864
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=94.00 E-value=0.081 Score=48.18 Aligned_cols=81 Identities=12% Similarity=0.217 Sum_probs=53.0
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHH-HHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cC
Q 010637 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VK 81 (505)
Q Consensus 7 ~~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp 81 (505)
-|+++| |.+-+|.++|+.|++.|++|.+.+|+++. .+...+... .+++.+. +.
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g----------------------~~~~~~~~Dvs 62 (247)
T d2ew8a1 5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLG----------------------RRVLTVKCDVS 62 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTT----------------------CCEEEEECCTT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcC----------------------CcEEEEEeeCC
Confidence 467777 45789999999999999999999998753 222221110 2233222 34
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+...++.+++++.....+=|++|+....
T Consensus 63 ~~~~v~~~~~~~~~~~G~iDilVnnAG~ 90 (247)
T d2ew8a1 63 QPGDVEAFGKQVISTFGRCDILVNNAGI 90 (247)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4456777777777666566788876554
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.97 E-value=0.026 Score=45.30 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=31.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||.|.+|.-+|..|++.|.+|+++.|.+.
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence 4799999999999999999999999999988764
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=93.91 E-value=0.083 Score=48.13 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=51.7
Q ss_pred cEEEE-cc-c--HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC
Q 010637 8 RIGLA-GL-A--VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (505)
Q Consensus 8 ~IgII-Gl-G--~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~ 83 (505)
|+.+| |. | -+|..+|+.|++.|++|.+.+|+++..+...+.. .....+..+-.-+.+.
T Consensus 9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~------------------~~~~~~~~~~~D~~~~ 70 (256)
T d1ulua_ 9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLA------------------EALGGALLFRADVTQD 70 (256)
T ss_dssp CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH------------------HHTTCCEEEECCTTCH
T ss_pred CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhh------------------hccCcccccccccCCH
Confidence 55555 75 4 4999999999999999999999865443332211 1100122222223444
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (505)
+.++.+++.+.....+=|++|++....
T Consensus 71 ~~v~~~~~~~~~~~g~iDilVnnag~~ 97 (256)
T d1ulua_ 71 EELDALFAGVKEAFGGLDYLVHAIAFA 97 (256)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECCCCC
T ss_pred HHHHHHHHHHHHhcCCceEEEeccccc
Confidence 566777777666555557888765543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.75 E-value=0.052 Score=46.51 Aligned_cols=94 Identities=15% Similarity=0.106 Sum_probs=58.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeee--CCHHHHHhhc---CCCcEEEEEc
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH--YTPRDFVLSI---QRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~--~s~~e~v~~l---~~advIil~v 80 (505)
.+|.|+|. |.+|....+.....|.+|++.++++++.+.+.+.+... +.-. .+..+-+..+ +..|+|+-++
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~----vi~~~~~~~~~~i~~~t~~~g~d~v~d~~ 105 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHE----VFNHREVNYIDKIKKYVGEKGIDIIIEML 105 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE----EEETTSTTHHHHHHHHHCTTCEEEEEESC
T ss_pred CEEEEEeccccccccccccccccCcccccccccccccccccccCccc----ccccccccHHHHhhhhhccCCceEEeecc
Confidence 36999995 99999888888889999999999998887777655421 1111 1222222211 2357777666
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.. . .++.....+.++-.++..+..
T Consensus 106 g~-~----~~~~~~~~l~~~G~iv~~G~~ 129 (174)
T d1yb5a2 106 AN-V----NLSKDLSLLSHGGRVIVVGSR 129 (174)
T ss_dssp HH-H----HHHHHHHHEEEEEEEEECCCC
T ss_pred cH-H----HHHHHHhccCCCCEEEEEecC
Confidence 42 2 334444555555555555443
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.66 E-value=0.029 Score=45.47 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=31.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.++.|||.|.+|.-+|..|++.|.+|+++++.+
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence 579999999999999999999999999999876
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=93.65 E-value=0.11 Score=47.28 Aligned_cols=83 Identities=12% Similarity=0.213 Sum_probs=54.4
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEE-eCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCC
Q 010637 8 RIGLA--GLAVMGQNLALNVAEKGFPISVY-NRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 8 ~IgII--GlG~MG~~lA~~La~~G~~V~v~-dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
.|.+| |.+-+|..+|+.|++.|++|.+. .|+++..+++.++.... . .+++.+. +.+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~----------------g---~~~~~~~~Dv~~ 62 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY----------------G---GQAITFGGDVSK 62 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH----------------T---CEEEEEECCTTS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc----------------C---CcEEEEeCCCCC
Confidence 46667 56889999999999999999875 56777766665432110 0 2333332 334
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.+.++.+++.+.....+=|++|+....
T Consensus 63 ~~~v~~~~~~~~~~~g~iDiLVnnAg~ 89 (244)
T d1edoa_ 63 EADVEAMMKTAIDAWGTIDVVVNNAGI 89 (244)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCCcccccccc
Confidence 456777777777766666788876543
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=93.64 E-value=0.15 Score=46.58 Aligned_cols=85 Identities=11% Similarity=0.153 Sum_probs=53.8
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCCh-HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cC
Q 010637 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VK 81 (505)
Q Consensus 7 ~~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp 81 (505)
-|+.+| |.+-+|..+|+.|++.|++|.+.+|+. +..+++.++... .- . .+++.+. +.
T Consensus 4 gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~--------------~~-g---~~~~~~~~Dv~ 65 (260)
T d1x1ta1 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAA--------------QH-G---VKVLYDGADLS 65 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHH--------------HH-T---SCEEEECCCTT
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHH--------------hc-C---CcEEEEECCCC
Confidence 367777 567899999999999999999999974 555554432110 00 1 2333332 23
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+.+.++++++.+.....+=|++|+....
T Consensus 66 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 93 (260)
T d1x1ta1 66 KGEAVRGLVDNAVRQMGRIDILVNNAGI 93 (260)
T ss_dssp SHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEeeccc
Confidence 4445667777666655555777776543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.63 E-value=0.2 Score=46.00 Aligned_cols=82 Identities=10% Similarity=0.205 Sum_probs=51.9
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCCh-HHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCC
Q 010637 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 8 ~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
|+.+| |.+-+|..+|+.|+++|++|.+.+|+. +.++++.+..... ..++..+. +.+
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~-------------------g~~~~~~~~D~~~ 79 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN-------------------GSDAACVKANVGV 79 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------------TCCEEEEECCTTC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhh-------------------CCceeeEeCCCCC
Confidence 67777 579999999999999999999988774 4444444322111 02333332 233
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
.+.+++.++.+.....+=+++|....
T Consensus 80 ~~~v~~~~~~~~~~~g~idilV~nag 105 (272)
T d1g0oa_ 80 VEDIVRMFEEAVKIFGKLDIVCSNSG 105 (272)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCCccccccc
Confidence 34566666666665555577776554
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=93.63 E-value=0.031 Score=44.88 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=31.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.+|.|||.|..|.-+|..|++.|.+|++++|.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence 479999999999999999999999999999876
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=93.57 E-value=0.034 Score=45.08 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=31.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||.|.+|.-+|..|++.|.+|+++++++.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence 5799999999999999999999999999998864
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=93.52 E-value=0.12 Score=47.36 Aligned_cols=84 Identities=10% Similarity=0.083 Sum_probs=51.1
Q ss_pred cEEEEcc-c--HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 8 RIGLAGL-A--VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 8 ~IgIIGl-G--~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
++-|.|. | -+|.++|+.|++.|++|++.+|+++..+.+.+ +.+....+.++..-+....
T Consensus 7 ~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~------------------l~~~~~~~~~~~~d~~~~~ 68 (274)
T d2pd4a1 7 KGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRP------------------IAQELNSPYVYELDVSKEE 68 (274)
T ss_dssp EEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHH------------------HHHHTTCCCEEECCTTCHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH------------------HHhhCCceeEeeecccchh
Confidence 3555575 5 49999999999999999999999643222221 1111112344444444445
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
.++++++.+...+.+-+++|.+...
T Consensus 69 ~~~~~~~~~~~~~g~id~lV~nag~ 93 (274)
T d2pd4a1 69 HFKSLYNSVKKDLGSLDFIVHSVAF 93 (274)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECCCC
T ss_pred hHHHHHHHHHHHcCCCCeEEeeccc
Confidence 5666666666666555666655443
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.48 E-value=0.032 Score=45.16 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=31.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||.|..|.-+|..|++.|++|+++++++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence 4799999999999999999999999999998763
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=93.47 E-value=0.08 Score=50.08 Aligned_cols=31 Identities=13% Similarity=0.392 Sum_probs=28.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNR 37 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr 37 (505)
|||-|+| .|.+|+.|+..|+++||+|.+.||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 6899997 599999999999999999999986
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.032 Score=51.24 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=31.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
+..||.|||.|.=|..-|..|+++|++|.|+..+.
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34579999999999999999999999999998764
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.42 E-value=0.023 Score=50.77 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=30.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~~ 40 (505)
+||+|||.|.-|..-|..|+++ ||+|++|++.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 5899999999999999999765 789999998864
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.37 E-value=0.04 Score=44.63 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=30.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.++.|||.|.+|.-+|..|++.|.+|+++.|++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~ 53 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI 53 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEech
Confidence 479999999999999999999999999998773
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.36 E-value=0.091 Score=44.80 Aligned_cols=94 Identities=6% Similarity=0.017 Sum_probs=57.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeeeCC-HHHHHhhc--CCCcEEEEEcCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYT-PRDFVLSI--QRPRSVIILVKA 82 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s-~~e~v~~l--~~advIil~vp~ 82 (505)
..|.|+|+|.+|...+..+...|. .|.+.++++++.+.+.+.+... -+...++ .++..+.. ...|+||.++..
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~---~i~~~~~~~~~~~~~~~~~g~d~vid~~g~ 110 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH---VVDARRDPVKQVMELTRGRGVNVAMDFVGS 110 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSE---EEETTSCHHHHHHHHTTTCCEEEEEESSCC
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccce---eecCcccHHHHHHHhhCCCCceEEEEecCc
Confidence 359999999999998888777674 6788899999988877765421 0111112 22222221 236888888765
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGG 107 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~s 107 (505)
... ++.....+.++-.++-.+
T Consensus 111 ~~~----~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 111 QAT----VDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp HHH----HHHGGGGEEEEEEEEECC
T ss_pred chH----HHHHHHHHhCCCEEEEEe
Confidence 432 344444555554444443
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=93.27 E-value=0.036 Score=44.65 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=30.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.+|.|||.|..|.-+|..|++.|.+|+++.|.+
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence 579999999999999999999999999999864
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.26 E-value=0.2 Score=40.70 Aligned_cols=113 Identities=13% Similarity=0.037 Sum_probs=80.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
..||-|-|. |.-|+--+..+.+.|-+|..- .+|.+- +... .++-++++.+|+++.. .+|.-++.||+..
T Consensus 15 ~TrVivQGiTG~~G~~ht~~m~~YGT~iVaG-VtPgKg------G~~~--~giPVf~tV~eA~~~~-~~daSvIfVPp~~ 84 (130)
T d1euca1 15 NTKVICQGFTGKQGTFHSQQALEYGTNLVGG-TTPGKG------GKTH--LGLPVFNTVKEAKEQT-GATASVIYVPPPF 84 (130)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEE-ECTTCT------TCEE--TTEEEESSHHHHHHHH-CCCEEEECCCHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEe-eccCCC------Cccc--cCccchhhHHHHHHhc-CCcEEEEecCHHH
Confidence 468999997 999999999999999886532 334321 1110 1588999999999864 3899999999987
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHC-CCeEEe
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK-GLLYLG 130 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~-gi~~i~ 130 (505)
+.+.+++.+...++ .+|+-+-.....|..++.+.+.+. +.++++
T Consensus 85 a~dAi~EAi~agI~--liV~ITEgIPv~Dm~~i~~~~~~~~~~~liG 129 (130)
T d1euca1 85 AAAAINEAIDAEVP--LVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 129 (130)
T ss_dssp HHHHHHHHHHTTCS--EEEECCCCCCHHHHHHHHHHHTTCSSCEEEC
T ss_pred HHHHHHHHHhCCCC--EEEEecCCCCHHHHHHHHHHHHhCCCcEEeC
Confidence 78888888876653 456655566667777776666444 466654
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.19 E-value=0.022 Score=53.53 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=31.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||+|.-|...|..|+++|++|.+++++..
T Consensus 2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4799999999999999999999999999998753
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=93.17 E-value=0.039 Score=49.67 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=32.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK 41 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~ 41 (505)
-+|.|||.|..|...|..|+++|++|.++++++.-
T Consensus 3 yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 3 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 47999999999999999999999999999988653
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=93.09 E-value=0.044 Score=44.38 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=31.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
..+|.|||.|.+|.-+|..|++.|.+|+++++.+
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence 3579999999999999999999999999998765
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.078 Score=48.24 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=35.4
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
-|+.+| |.+-+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~ 48 (245)
T d2ag5a1 6 GKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK 48 (245)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 367777 67999999999999999999999999988766544
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=93.02 E-value=0.034 Score=51.04 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=29.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
+|.|||.|.+|.+.|..|+++|++|.++++..
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 58999999999999999999999999999753
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.00 E-value=0.1 Score=44.59 Aligned_cols=72 Identities=10% Similarity=0.076 Sum_probs=49.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhcccCCCCeeee----CCHHHHHhhc--CCCcEEEEEc
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGH----YTPRDFVLSI--QRPRSVIILV 80 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~----~s~~e~v~~l--~~advIil~v 80 (505)
+|.|+|+|-+|...+..++..|. .|.+.++++++.+...+.+... .... +...+..... ...|++|.++
T Consensus 31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~----~i~~~~~~~~~~~~~~~~~~~G~D~vid~~ 106 (176)
T d2jhfa2 31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE----CVNPQDYKKPIQEVLTEMSNGGVDFSFEVI 106 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE----EECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred EEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCee----EEecCCchhHHHHHHHHHhcCCCCEEEecC
Confidence 59999999999999999999985 7889999999988777665431 1111 1222332221 2468888887
Q ss_pred CCC
Q 010637 81 KAG 83 (505)
Q Consensus 81 p~~ 83 (505)
...
T Consensus 107 G~~ 109 (176)
T d2jhfa2 107 GRL 109 (176)
T ss_dssp CCH
T ss_pred Cch
Confidence 664
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.94 E-value=0.11 Score=47.85 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=34.7
Q ss_pred cEEEE-cc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHh
Q 010637 8 RIGLA-GL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (505)
Q Consensus 8 ~IgII-Gl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~ 48 (505)
|+.+| |. +-+|.++|+.|++.|++|.+.+|+.++++++.++
T Consensus 15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~ 57 (269)
T d1xu9a_ 15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSH 57 (269)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 45555 54 6799999999999999999999999998877654
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=92.89 E-value=0.14 Score=48.43 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=33.0
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHH
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKV 42 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~ 42 (505)
+++|.|+| .|.+|+.++..|.++||+|.+..|++++.
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~ 40 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL 40 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence 46899998 59999999999999999999999987654
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.87 E-value=0.046 Score=44.39 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=31.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.+|.|||.|..|.-+|..|++.|.+|+++.|++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence 479999999999999999999999999999874
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.82 E-value=0.21 Score=45.16 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=70.0
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEEE-EeCC----------hHHHHHHHHhhcc-cCCCCeeeeCCHHHHHhhcCCC
Q 010637 7 SRIGLAGLAVMGQNLALNVAE-KGFPISV-YNRT----------TSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRP 73 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~-~G~~V~v-~dr~----------~~~~~~l~~~~~~-~g~~~i~~~~s~~e~v~~l~~a 73 (505)
++|.|-|.|.+|..+|+.|.+ .|..|.. .|.+ .+.+.+....... .+..+... -+.+++... +|
T Consensus 33 ~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~--~~ 109 (239)
T d1gtma1 33 KTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATN-ITNEELLEL--EV 109 (239)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEE-ECHHHHHHS--CC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCee-ecccccccc--cc
Confidence 579999999999999999975 5887664 3543 2333333322211 00001222 255666653 49
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
|+++-|-..+....+ -.+.+ .-++|+...|... +.+..+.|.++|+.|+.
T Consensus 110 DIl~PcA~~~~I~~~----~a~~i-~ak~I~e~AN~p~--t~ea~~~L~~rgI~~iP 159 (239)
T d1gtma1 110 DVLAPAAIEEVITKK----NADNI-KAKIVAEVANGPV--TPEADEILFEKGILQIP 159 (239)
T ss_dssp SEEEECSCSCCBCTT----GGGGC-CCSEEECCSSSCB--CHHHHHHHHHTTCEEEC
T ss_pred cEEeeccccccccHH----HHHhc-cccEEEecCCCCC--CHHHHHHHHHCCCEEec
Confidence 998888766532222 23334 3478888888764 33556788999998875
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.73 E-value=0.2 Score=45.56 Aligned_cols=83 Identities=17% Similarity=0.331 Sum_probs=51.0
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEE-EeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--cCC
Q 010637 8 RIGLA--GLAVMGQNLALNVAEKGFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (505)
Q Consensus 8 ~IgII--GlG~MG~~lA~~La~~G~~V~v-~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--vp~ 82 (505)
|+.+| |.+-+|..+|+.|++.|++|.+ ++++.+..+++.++....| .+++.+. +.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g-------------------~~~~~~~~D~~~ 67 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG-------------------AQGVAIQADISK 67 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------------CCEEEEECCTTS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC-------------------CCceEecCCCCC
Confidence 56666 5688999999999999999997 5667666666554321110 2333332 223
Q ss_pred CchHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
...++..++.+......=+++|+....
T Consensus 68 ~~~v~~~~~~~~~~~g~idilinnag~ 94 (259)
T d1ja9a_ 68 PSEVVALFDKAVSHFGGLDFVMSNSGM 94 (259)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHcCCCcEEEecccc
Confidence 345666666665554444667665543
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=92.64 E-value=0.056 Score=43.49 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=30.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.+|.|||.|.+|.-+|..|++.|.+|+++.+..
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD 55 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence 479999999999999999999999999998765
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=92.53 E-value=0.041 Score=50.04 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=35.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~ 46 (505)
..+|-|||.|.-|...|..|+++|++|.++++++.--..+.
T Consensus 4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~ 44 (253)
T d2gqfa1 4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKIL 44 (253)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceE
Confidence 45799999999999999999999999999999876544444
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=92.52 E-value=0.055 Score=44.47 Aligned_cols=34 Identities=12% Similarity=0.296 Sum_probs=31.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||.|.+|.-+|..|++.|.+|+++++.+.
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence 5799999999999999999999999999998753
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.29 E-value=0.13 Score=45.06 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=35.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~ 50 (505)
.+|.|+|+|.+|...+..+...|. .|.+.|+++++++...+.+.
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga 71 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF 71 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc
Confidence 369999999999777777766676 78899999999887776543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.27 E-value=0.1 Score=44.69 Aligned_cols=43 Identities=12% Similarity=0.001 Sum_probs=35.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhh
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA 49 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~ 49 (505)
.+|-|.| .|.+|...++.+...|.+|.+..+++++.+.+.+.+
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~G 70 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLG 70 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTC
T ss_pred CEEEEECCCCCcccccchhhccccccceeeeccccccccccccc
Confidence 3588878 599999999888888999999999998877666544
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.27 E-value=0.088 Score=45.31 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=56.9
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccC--CCCe--eee---CCHHHHHhhcCCCcEEEE
Q 010637 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG--QLPL--TGH---YTPRDFVLSIQRPRSVII 78 (505)
Q Consensus 7 ~~IgIIGlG-~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g--~~~i--~~~---~s~~e~v~~l~~advIil 78 (505)
+++.|||-+ .+|.+||..|+++|..|+.++.+.... +.. ....- ..+. ... +.+++.... +|++|.
T Consensus 30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~lk~~~~~---aDIvIs 103 (171)
T d1edza1 30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQK--FTR-GESLKLNKHHVEDLGEYSEDLLKKCSLD---SDVVIT 103 (171)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEE--EES-CCCSSCCCCEEEEEEECCHHHHHHHHHH---CSEEEE
T ss_pred CEEEEECCccccHHHHHHHHHHCCCEEEEeccccccc--ccc-ccceeeeeeccccccccchhHHhhcccc---CCEEEE
Confidence 579999976 569999999999999999998663210 000 00000 0000 001 124444545 999999
Q ss_pred EcCCCch-HHHHHHHHHhcCCCCcEEEecCCC
Q 010637 79 LVKAGSP-VDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 79 ~vp~~~~-v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
+++.... +. ...+++|.++||.+..
T Consensus 104 avG~p~~~i~------~d~ik~GavvIDvGi~ 129 (171)
T d1edza1 104 GVPSENYKFP------TEYIKEGAVCINFACT 129 (171)
T ss_dssp CCCCTTCCBC------TTTSCTTEEEEECSSS
T ss_pred ccCCCccccC------hhhcccCceEeecccc
Confidence 9987531 11 1357899999998865
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.059 Score=50.17 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=30.0
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
+|.|||.|.-|..-|..|+++|++|+|++++.
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 48999999999999999999999999999775
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=92.06 E-value=0.05 Score=51.21 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=31.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||+|.-|..+|..|.++|++|.+++++++
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 3699999999999999999999999999999865
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=91.92 E-value=0.2 Score=47.14 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=33.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHH
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDET 45 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l 45 (505)
+||-|.| .|.+|+.++..|.++||+|.+++|+..+...+
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~ 48 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSL 48 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHH
Confidence 6899998 69999999999999999999999987654333
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=91.89 E-value=0.057 Score=43.03 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=31.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.++.|||.|..|.-+|..|++.|++|+++++.+.
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence 4799999999999999999999999999988753
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.61 E-value=0.08 Score=47.45 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=32.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
..+|.|||.|.-|...|..|++.|++|++++++++
T Consensus 49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence 35799999999999999999999999999998864
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.45 E-value=0.098 Score=53.25 Aligned_cols=125 Identities=7% Similarity=0.054 Sum_probs=72.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc-ccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.+|.|||+|..|..+++||+..|. +++++|.+.=....+...-. .....+-.-+....+.+..|. +++-+..+...
T Consensus 26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lN-p~v~i~~~~~~- 103 (529)
T d1yova1 26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELN-SDVSGSFVEES- 103 (529)
T ss_dssp CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTC-TTSBCCEESSC-
T ss_pred CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhC-CCCcEEEEcCC-
Confidence 589999999999999999999996 78999876544444433210 000000001111122222221 45544444432
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeCCCCC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsG 135 (505)
..+.++.....+..-++||++. ..+.....+...+.++++-|+.+.+.|
T Consensus 104 -~~~~~~~~~~~~~~~dvVv~~~-~~~~~~~~l~~~c~~~~ip~i~~~~~G 152 (529)
T d1yova1 104 -PENLLDNDPSFFCRFTVVVATQ-LPESTSLRLADVLWNSQIPLLICRTYG 152 (529)
T ss_dssp -HHHHHHSCGGGGGGCSEEEEES-CCHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred -chhhhhhHHHHhcCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 3444433334455567888764 344555567777778888888776544
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.42 E-value=0.43 Score=40.89 Aligned_cols=114 Identities=13% Similarity=0.136 Sum_probs=71.8
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCC-CCeee-eCCHHHHHhhcCCCcEEEEEcCCCch
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ-LPLTG-HYTPRDFVLSIQRPRSVIILVKAGSP 85 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~-~~i~~-~~s~~e~v~~l~~advIil~vp~~~~ 85 (505)
+|-=||+|.=..+ ..|++.+.+|+.+|++++.++...+.....|- .+++. ..+..+........|.|++..+.. .
T Consensus 36 ~VLDiGcGsG~~s--~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~~-~ 112 (186)
T d1l3ia_ 36 VAVDVGCGTGGVT--LELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGG-E 112 (186)
T ss_dssp EEEEESCTTSHHH--HHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCTT-C
T ss_pred EEEEEECCeEccc--ccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCccc-c
Confidence 4666777653333 34566777999999999988777654332210 14433 356667766667789998776654 5
Q ss_pred HHHHHHHHHhcCCCCcE-EEecCCCCchhHHHHHHHHHHCCC
Q 010637 86 VDQTIAALSEHMSPGDC-IIDGGNEWYLNTERRIHEASQKGL 126 (505)
Q Consensus 86 v~~vl~~l~~~l~~g~i-IId~st~~~~~t~~~~~~l~~~gi 126 (505)
...+++.+...|++|.. ++.. ..........+.+...+.
T Consensus 113 ~~~~~~~~~~~LkpgG~lvi~~--~~~e~~~~~~~~l~~~~~ 152 (186)
T d1l3ia_ 113 LQEILRIIKDKLKPGGRIIVTA--ILLETKFEAMECLRDLGF 152 (186)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEE--CBHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHhCcCCEEEEEe--eccccHHHHHHHHHHcCC
Confidence 78888888888877664 4443 223344445555665543
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=91.30 E-value=0.07 Score=48.61 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=32.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHH
Q 010637 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSK 41 (505)
Q Consensus 6 ~~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~ 41 (505)
++||-|+|. |.+|+.++..|.++||+|.+.+|++..
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~ 39 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA 39 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence 468999985 999999999999999999999997653
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.24 E-value=0.77 Score=38.52 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=37.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~ 50 (505)
.+|.|+|+|.+|...+..++..|- .|++.|+++++.+...+.++
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA 74 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA 74 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC
Confidence 369999999999999988888775 68899999999888777654
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.11 E-value=0.046 Score=48.61 Aligned_cols=34 Identities=9% Similarity=0.038 Sum_probs=30.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-------cEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-------PISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-------~V~v~dr~~~ 40 (505)
.||+|||.|.-|.+-|..|+++|| +|++|++.+.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 389999999999999999999984 7999998864
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.03 E-value=0.16 Score=46.15 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=37.6
Q ss_pred CCCCcEEEE-c-ccHHHHHHHHHHHh---CCCcEEEEeCChHHHHHHHHh
Q 010637 4 SALSRIGLA-G-LAVMGQNLALNVAE---KGFPISVYNRTTSKVDETLDR 48 (505)
Q Consensus 4 ~~~~~IgII-G-lG~MG~~lA~~La~---~G~~V~v~dr~~~~~~~l~~~ 48 (505)
...-||+|| | .+-+|..+|+.|++ +|++|.+.+|++++++++.++
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~ 52 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEE 52 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHH
Confidence 345589999 5 47899999999996 799999999999988877654
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=90.94 E-value=0.1 Score=41.59 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=31.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.+|.|||.|.+|.-+|..|++.|.+|+++.+.+.
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence 5799999999999999999999999999998764
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.89 E-value=0.092 Score=47.47 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=29.3
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
|||.|| | .+-+|.++|+.|++.|++|.+.||+.+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 577766 5 578999999999999999999998754
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.78 E-value=0.22 Score=44.94 Aligned_cols=82 Identities=13% Similarity=0.155 Sum_probs=51.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~ 84 (505)
.|-|.| .+-+|..+|+.|++.|+ .|.+..|+.++++++.+.... . ..++.+=+.+.+
T Consensus 5 tilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~-----------------~---~~~~~~Dvs~~~ 64 (250)
T d1yo6a1 5 SVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDS-----------------R---VHVLPLTVTCDK 64 (250)
T ss_dssp EEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCT-----------------T---EEEEECCTTCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCC-----------------c---eEEEEEecCCHH
Confidence 344445 58899999999999996 577789999887776542110 0 222322344545
Q ss_pred hHHHHHHHHHhcCCC--CcEEEecCCC
Q 010637 85 PVDQTIAALSEHMSP--GDCIIDGGNE 109 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~--g~iIId~st~ 109 (505)
.++++++.+...+.. =+++|++...
T Consensus 65 ~v~~~~~~i~~~~~~~~idilinnAG~ 91 (250)
T d1yo6a1 65 SLDTFVSKVGEIVGSDGLSLLINNAGV 91 (250)
T ss_dssp HHHHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEcCcc
Confidence 667777666554322 3677776543
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=90.68 E-value=0.072 Score=43.07 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=31.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
.++.|||.|.+|.-+|..|++.|.+|++..|++.
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence 4799999999999999999999999999988763
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.58 E-value=0.06 Score=49.02 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=30.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
|||-|.|. |.+|+.|+..|.++||+|...||+.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 68999996 9999999999999999999999864
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=90.51 E-value=0.43 Score=43.44 Aligned_cols=41 Identities=12% Similarity=0.332 Sum_probs=31.7
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEe-CChHHHHHHHH
Q 010637 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYN-RTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgII--GlG~MG~~lA~~La~~G~~V~v~d-r~~~~~~~l~~ 47 (505)
+-|+|| |.+-+|..+|+.|+++|++|.+.+ |+.+..+++.+
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~ 45 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSA 45 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHH
Confidence 358888 557899999999999999999864 55555555544
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=90.48 E-value=0.087 Score=49.69 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=32.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHH
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTTSKVDET 45 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l 45 (505)
|||-|.| +|.+|+.++..|+++|+ +|.+.|+.......+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~ 41 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF 41 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGG
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhh
Confidence 5899997 59999999999999995 899998876654443
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=90.32 E-value=0.084 Score=49.55 Aligned_cols=33 Identities=9% Similarity=0.227 Sum_probs=30.0
Q ss_pred cEEEEcccHHHHHHHHHHH-----hCCCcEEEEeCChH
Q 010637 8 RIGLAGLAVMGQNLALNVA-----EKGFPISVYNRTTS 40 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La-----~~G~~V~v~dr~~~ 40 (505)
.|.|||.|..|..+|..|+ ++|++|.++++.+.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 6999999999999999996 57999999998764
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.07 E-value=1.2 Score=41.19 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=52.4
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcC-CCcEEEEEcCCC
Q 010637 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQ-RPRSVIILVKAG 83 (505)
Q Consensus 7 ~~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~-~advIil~vp~~ 83 (505)
-|+.|| |.+-+|..+|+.|+++|++|.+.||+.+..... ......+++++.+. ....+..-+.+.
T Consensus 7 gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~d~~~~ 74 (302)
T d1gz6a_ 7 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVG------------KGSSAADKVVEEIRRRGGKAVANYDSV 74 (302)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCB------------CCSHHHHHHHHHHHHTTCEEEEECCCG
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhh------------hhHHHHHHHHHHHhhcccccccccchH
Confidence 467777 457899999999999999999998875421000 00001111111110 123333444444
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCC
Q 010637 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
..++++++.+.....+=|++|+...
T Consensus 75 ~~~~~~v~~~~~~~G~iDiLVnNAG 99 (302)
T d1gz6a_ 75 EAGEKLVKTALDTFGRIDVVVNNAG 99 (302)
T ss_dssp GGHHHHHHHHHHHTSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCc
Confidence 5667777776666655577777644
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.03 E-value=0.19 Score=42.88 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=21.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKG 29 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G 29 (505)
+.+|+++|+|.+|+.++..|.++.
T Consensus 4 ~i~I~l~G~G~VG~~l~~~l~~~~ 27 (168)
T d1ebfa1 4 VVNVAVIGAGVVGSAFLDQLLAMK 27 (168)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCC
T ss_pred EEEEEEEeCCHHHHHHHHHHHHhH
Confidence 458999999999999999998754
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=89.87 E-value=0.44 Score=43.01 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=30.1
Q ss_pred cEEEEcc-cH--HHHHHHHHHHhCCCcEEEEeCChHHHH
Q 010637 8 RIGLAGL-AV--MGQNLALNVAEKGFPISVYNRTTSKVD 43 (505)
Q Consensus 8 ~IgIIGl-G~--MG~~lA~~La~~G~~V~v~dr~~~~~~ 43 (505)
++-|.|. |. +|.++|+.|+++|.+|.+.+|+.++..
T Consensus 8 ~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~ 46 (268)
T d2h7ma1 8 RILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI 46 (268)
T ss_dssp EEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH
Confidence 4555685 65 999999999999999999999987653
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=89.81 E-value=0.37 Score=43.93 Aligned_cols=118 Identities=10% Similarity=-0.015 Sum_probs=65.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEE-eCC----------hHHHHHHHHhh-ccc-CCC-------CeeeeCCHHHH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVY-NRT----------TSKVDETLDRA-HRE-GQL-------PLTGHYTPRDF 66 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~-dr~----------~~~~~~l~~~~-~~~-g~~-------~i~~~~s~~e~ 66 (505)
.+|.|-|.|++|...|+.|.+.|..|... |.+ .+.+.++..+. ... +.. +.... +.+++
T Consensus 37 ~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 115 (255)
T d1bgva1 37 KTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF-PGEKP 115 (255)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE-ETCCG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee-chhhc
Confidence 57999999999999999999999987643 432 23322222111 000 000 01111 12222
Q ss_pred HhhcCCCcEEEEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 67 v~~l~~advIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
... .||+++-|-..+....+.++.|... .=++|+...|... +.+.....+.++|+.++.
T Consensus 116 ~~~--~~DiliPcA~~~~I~~~~a~~l~a~--~ck~I~EgAN~p~-t~ea~~~ll~~~gI~vvP 174 (255)
T d1bgva1 116 WGQ--KVDIIMPCATQNDVDLEQAKKIVAN--NVKYYIEVANMPT-TNEALRFLMQQPNMVVAP 174 (255)
T ss_dssp GGS--CCSEEECCSCTTCBCHHHHHHHHHT--TCCEEECCSSSCB-CHHHHHHHHHCTTCEEEC
T ss_pred ccc--cccEEeeccccccccHHHHHhhhhc--CceEEecCCCCCc-chHHHHHHHHhcCCEEeh
Confidence 221 4898876655544334444555431 1158888888754 333334456778988763
|
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=89.79 E-value=0.25 Score=41.77 Aligned_cols=117 Identities=18% Similarity=0.114 Sum_probs=75.8
Q ss_pred hhhhHhhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccc----cCCCchhHHHHHh
Q 010637 186 FVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKD----EYGEGELVDKILD 261 (505)
Q Consensus 186 ~vK~v~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~----~~~~~~~l~~i~~ 261 (505)
..++-.|...+.+...+.|+..+++..| -+++.+... .|-++-++ +......++. .+..+..++.+.+
T Consensus 25 gl~~g~N~~aali~~g~~Em~~~~~~~g-~~~~t~~~l-----aGlGDli~--Tc~s~~sRN~~~G~~l~~g~~~~e~~~ 96 (160)
T d1n1ea1 25 GLGMGLNARAALIMRGLLEIRDLTAALG-GDGSAVFGL-----AGLGDLQL--TCSSELSRNFTVGKKLGKGLPIEEIQR 96 (160)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSTTTTST-----TTHHHHHH--HTTCTTSHHHHHHHHHHHTCCHHHHHH
T ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHhC-CCccceecc-----ccchhhee--eeecchhHHHHHHHHHhccccHHHHHH
Confidence 3455678989999999999999999998 555543221 12222111 0000000000 0112346677778
Q ss_pred hhCCCchHHHHHH----HHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccC
Q 010637 262 KTGMKGTGKWTVQ----QAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEA 312 (505)
Q Consensus 262 ~~~~kgtg~~~~~----~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~~~~ 312 (505)
..+++-+|..++. .+.++++.+|++.+ ..+.+...++.+..+..++..|
T Consensus 97 ~~~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~--vy~Il~~~~~p~~~i~~Lm~r~ 149 (160)
T d1n1ea1 97 TSKAVAEGVATADPLMRLAKQLKVKMPLCHQ--IYEIVYKKKNPRDALADLLSCG 149 (160)
T ss_dssp SCCSCCHHHHHHHHHHHHHHHHTCCCHHHHH--HHHHHHSCCCHHHHHHHHTTSC
T ss_pred hccchHHHHHHHHHHHHHHHHcCCCCcHHHH--HHHHHhCcCCHHHHHHHHHCCC
Confidence 8888999977774 46788999999985 3677888888888888887654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.67 E-value=0.21 Score=42.23 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=35.3
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHhhc
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~ 50 (505)
+|.|+|+|-+|...++.+...|. .|.+.++++++.+...+.+.
T Consensus 31 tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa 74 (176)
T d2fzwa2 31 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA 74 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC
T ss_pred EEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC
Confidence 69999999999988888888886 57778899988877766554
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=89.50 E-value=0.13 Score=41.76 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=30.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.++.|||.|.+|.-+|..|++.|.+|+++++.+
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence 479999999999999999999999999998876
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.32 E-value=0.075 Score=47.62 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=46.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCC--cEEEEeCChHHHHHHHHhhcccCCCCeee--eCCHHHHHhhcCCCcEEEEEcC
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~v~~l~~advIil~vp 81 (505)
++|-|.| +|.+|+.++..|.++|. +|.+++|++.+...-..... .... ..+++++.+.++.+|+++.++.
T Consensus 15 k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i-----~~~~~D~~~~~~~~~~~~~~d~vi~~~~ 89 (232)
T d2bkaa1 15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNV-----NQEVVDFEKLDDYASAFQGHDVGFCCLG 89 (232)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGC-----EEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccccccee-----eeeeeccccccccccccccccccccccc
Confidence 5799997 59999999999999994 89999998654221111110 1111 2244455555667888888765
Q ss_pred C
Q 010637 82 A 82 (505)
Q Consensus 82 ~ 82 (505)
.
T Consensus 90 ~ 90 (232)
T d2bkaa1 90 T 90 (232)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=89.28 E-value=0.61 Score=41.79 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=28.9
Q ss_pred cEEEE-cc-c--HHHHHHHHHHHhCCCcEEEEeCChHHHHHH
Q 010637 8 RIGLA-GL-A--VMGQNLALNVAEKGFPISVYNRTTSKVDET 45 (505)
Q Consensus 8 ~IgII-Gl-G--~MG~~lA~~La~~G~~V~v~dr~~~~~~~l 45 (505)
|+.+| |. | -+|.++|+.|++.|++|.+.+|+++..+.+
T Consensus 6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~ 47 (258)
T d1qsga_ 6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV 47 (258)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 44455 65 4 378999999999999999999996654443
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=89.09 E-value=1.1 Score=40.06 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=28.9
Q ss_pred EEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHHH
Q 010637 9 IGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKV 42 (505)
Q Consensus 9 IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~~ 42 (505)
++|| |.+-+|.++|+.|+++|++|.+.+|+.++.
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~ 38 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA 38 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence 5666 457799999999999999999999986653
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=88.66 E-value=0.15 Score=44.15 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=29.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~--G~~V~v~dr~~ 39 (505)
|||.|||.|..|..+|..|.+. +.+|++++|++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 6899999999999999999886 45799998764
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=88.25 E-value=0.59 Score=37.39 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=59.8
Q ss_pred CCcEEEEccc-----------HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCc
Q 010637 6 LSRIGLAGLA-----------VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPR 74 (505)
Q Consensus 6 ~~~IgIIGlG-----------~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~ad 74 (505)
..||-|||.| ..+...++.|.+.|+++.+.|-||+.+ .++++ + +|
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV-----------------std~d-~------aD 59 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV-----------------STDYD-T------SD 59 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS-----------------TTSTT-S------SS
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh-----------------hcChh-h------cC
Confidence 4589999997 678888999999999999999998642 22322 1 44
Q ss_pred EE-EEEcCCCchHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEe
Q 010637 75 SV-IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 75 vI-il~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
.+ |..+.. +.+.++++ .-+|..+++-.+.- +...+...|.+.|+..++
T Consensus 60 ~lYfeplt~-e~v~~Ii~----~E~p~~ii~~~GGQ---talnla~~L~~~gv~iLG 108 (121)
T d1a9xa4 60 RLYFEPVTL-EDVLEIVR----IEKPKGVIVQYGGQ---TPLKLARALEAAGVPVIG 108 (121)
T ss_dssp EEECCCCSH-HHHHHHHH----HHCCSEEECSSSTH---HHHTTHHHHHHTTCCBCS
T ss_pred ceEEccCCH-HHHHHHHH----HhCCCEEEeehhhh---hHHHHHHHHHHcCCcEEC
Confidence 44 445433 23343332 23466777776653 445566677777765443
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=88.10 E-value=0.31 Score=45.87 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=35.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
++|.|.| .|.+|+.++..|.++||+|.+..|+.++.+.+..
T Consensus 12 k~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~ 53 (342)
T d1y1pa1 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQK 53 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHH
Confidence 4799997 5999999999999999999999999887766543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=87.96 E-value=0.43 Score=40.35 Aligned_cols=43 Identities=12% Similarity=-0.001 Sum_probs=35.7
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH 50 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~ 50 (505)
+|.|+| .|.+|....+.....|.+|++.++++++.+.+.+.+.
T Consensus 31 ~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa 74 (179)
T d1qora2 31 QFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA 74 (179)
T ss_dssp EEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred EEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC
Confidence 688885 5668888888878889999999999999888877654
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.87 E-value=0.34 Score=43.51 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=29.9
Q ss_pred CCcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHH
Q 010637 6 LSRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSK 41 (505)
Q Consensus 6 ~~~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~ 41 (505)
+-|+.+| | .+-+|..+|+.|++.|++|.+.+|+.+.
T Consensus 6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~ 43 (237)
T d1uzma1 6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA 43 (237)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence 3466666 4 5789999999999999999999998654
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.85 E-value=0.22 Score=46.79 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=28.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNR 37 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr 37 (505)
.||-|.| .|.+|+.|+..|+++||+|++.|+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 4798887 599999999999999999999975
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=87.70 E-value=1.4 Score=39.54 Aligned_cols=84 Identities=7% Similarity=0.072 Sum_probs=50.7
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCC--C
Q 010637 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA--G 83 (505)
Q Consensus 8 ~IgII-G-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~--~ 83 (505)
|+.+| | .+-+|..+|+.|++.|.+|.+..|+.++.+.+.+... ......+.+..+-. +
T Consensus 6 K~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~------------------~~~~~~~~~~~~d~~~~ 67 (254)
T d1sbya1 6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKA------------------INPKVNITFHTYDVTVP 67 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHH------------------HCTTSEEEEEECCTTSC
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHh------------------hCCCCCEEEEEeecCCC
Confidence 45555 5 5679999999999999999888776665444332110 00012333333321 2
Q ss_pred -chHHHHHHHHHhcCCCCcEEEecCCC
Q 010637 84 -SPVDQTIAALSEHMSPGDCIIDGGNE 109 (505)
Q Consensus 84 -~~v~~vl~~l~~~l~~g~iIId~st~ 109 (505)
..++++++.+.....+=|++|.+...
T Consensus 68 ~~~~~~~~~~~~~~~g~iDilvnnAG~ 94 (254)
T d1sbya1 68 VAESKKLLKKIFDQLKTVDILINGAGI 94 (254)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEeCCCC
Confidence 34667777776665555788876553
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=87.43 E-value=0.2 Score=41.77 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=29.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~--~V~v~dr~~ 39 (505)
+||-|||.|..|..+|..|.+.|+ +|+++++++
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 489999999999999999999885 788888776
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=87.16 E-value=0.16 Score=46.25 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=31.1
Q ss_pred EEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHH
Q 010637 11 LAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (505)
Q Consensus 11 IIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~ 47 (505)
|-|. +-+|..+|+.|++.|++|.+.+|+.++.+++.+
T Consensus 5 VTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~ 42 (252)
T d1zmta1 5 VTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA 42 (252)
T ss_dssp ESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh
Confidence 3354 569999999999999999999999888777654
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=87.12 E-value=0.22 Score=45.50 Aligned_cols=34 Identities=12% Similarity=0.324 Sum_probs=30.6
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAE-KGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~-~G~~V~v~dr~~~ 40 (505)
.+|.|||.|.-|...|..|++ .|++|.++++.+.
T Consensus 34 ~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 34 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 359999999999999999997 4999999998864
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=87.03 E-value=0.33 Score=44.16 Aligned_cols=97 Identities=18% Similarity=0.074 Sum_probs=65.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCCchH
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~~~v 86 (505)
.||++||. + ++...+.+.|.++.+++|++.. ...+....++++.. ||+||+.-.+ -+
T Consensus 123 ~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~~--------------gd~p~~~~~~lLp~---aD~viiTGsT--lv 179 (251)
T d2h1qa1 123 KKVGVVGH--F--PHLESLLEPICDLSILEWSPEE--------------GDYPLPASEFILPE---CDYVYITCAS--VV 179 (251)
T ss_dssp SEEEEESC--C--TTHHHHHTTTSEEEEEESSCCT--------------TCEEGGGHHHHGGG---CSEEEEETHH--HH
T ss_pred CEEEEEec--c--hhHHHHHhcCCcEEEEeCCCCC--------------CCCCchHHHHhhhc---CCEEEEEech--hh
Confidence 57999986 4 6777888999999999999731 12334455666666 9999988543 56
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHHHHHCCCeEEeC
Q 010637 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (505)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (505)
...++.|+.+.++...|+-.+-+.|-.-. +-+.|+.+++.
T Consensus 180 N~Tl~~LL~~~~~a~~vvl~GPS~p~~P~-----lf~~Gv~~lag 219 (251)
T d2h1qa1 180 DKTLPRLLELSRNARRITLVGPGTPLAPV-----LFEHGLQELSG 219 (251)
T ss_dssp HTCHHHHHHHTTTSSEEEEESTTCCCCGG-----GGGTTCSEEEE
T ss_pred cCCHHHHHHhCCcCCEEEEECCCcccCHH-----HHhcCCceEeE
Confidence 77788999988777655544444332211 22467777653
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.03 E-value=0.26 Score=46.12 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=29.0
Q ss_pred CcEE-EEc-ccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 7 SRIG-LAG-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~Ig-IIG-lG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
+||+ |.| .|.+|+.++..|.++||+|.+.||.+.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~ 36 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS 36 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 3786 555 699999999999999999999999653
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.53 E-value=0.28 Score=41.30 Aligned_cols=111 Identities=12% Similarity=0.063 Sum_probs=62.9
Q ss_pred hhhHHHhHhhHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhC----CC
Q 010637 191 HNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTG----MK 266 (505)
Q Consensus 191 ~N~i~~~~~~~i~Ea~~l~~~~g~l~~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~----~k 266 (505)
.|...+.+...+.|+..+++..| -+++.+... .|-++-++.-..++..+-...+..+..++.+.+... +.
T Consensus 34 ~N~~aali~~g~~Em~~~~~~~g-~~~~t~~~~-----aGiGDLi~Tc~~sRN~~~G~~l~~G~~~~e~~~~~~~~~~~~ 107 (155)
T d1txga1 34 SNAKGVIATRAINEMAELIEILG-GDRETAFGL-----SGFGDLIATFRGGRNGMLGELLGKGLSIDEAMEELERRGVGV 107 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SCGGGGGST-----TTHHHHHHTTTCHHHHHHHHHHHTTCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhhHhhHHHhhc-ccchhhccc-----chhhhHHhhcCCCCccHHHHHHhhhhhHHHHHHHhccccccc
Confidence 58888889999999999999998 677755322 122221110000000000000112234555555543 24
Q ss_pred chHHHHHH----HHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHh
Q 010637 267 GTGKWTVQ----QAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVL 309 (505)
Q Consensus 267 gtg~~~~~----~A~~~gvp~p~i~~av~~r~~s~~~~~r~~~~~~~ 309 (505)
-+|..++. .+.++++.+|++.. | .+.+...++....+..++
T Consensus 108 vEG~~t~~~v~~l~~~~~i~~Pi~~~-v-y~Il~~~~~~~~~i~~L~ 152 (155)
T d1txga1 108 VEGYKTAEKAYRLSSKINADTKLLDS-I-YRVLYEGLKVEEVLFELA 152 (155)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHH-H-HHHHHSCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCcHHHH-H-HHHHhCcCCHHHHHHHHH
Confidence 56866665 57778999999985 3 456655555665555554
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Probab=86.45 E-value=2.9 Score=33.74 Aligned_cols=122 Identities=12% Similarity=0.028 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC-----chHHHHH
Q 010637 16 VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG-----SPVDQTI 90 (505)
Q Consensus 16 ~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~-----~~v~~vl 90 (505)
.|...++..+.+.|++|.+++.+.... .++...+..+|.||+..|.. ..++..+
T Consensus 18 ~vA~~Ia~~l~~~g~~v~~~~~~~~~~---------------------~~~~~~~~~~d~ii~Gspt~~g~~~~~~~~~l 76 (149)
T d1ycga1 18 KMAHALMDGLVAGGCEVKLFKLSVSDR---------------------NDVIKEILDARAVLVGSPTINNDILPVVSPLL 76 (149)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEGGGSCH---------------------HHHHHHHHHCSEEEEECCCBTTBCCGGGHHHH
T ss_pred HHHHHHHHHHHhcCCeeEEEEccccch---------------------HHHhhhhhhCCeEEEEeecccCCCCHHHHHHH
Confidence 477778888888999999987654322 22222222289999999853 3577788
Q ss_pred HHHHhcCCCCcEEEecCC-C-CchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHHhcc
Q 010637 91 AALSEHMSPGDCIIDGGN-E-WYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQ 168 (505)
Q Consensus 91 ~~l~~~l~~g~iIId~st-~-~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~iga~ 168 (505)
+.+...-.++..+.-.+| + .....+.+.+.+...|...+..|..-. . ..-+++.+++++++=+.++.+
T Consensus 77 ~~l~~~~~~~k~~~~fgs~g~~g~a~~~l~~~l~~~g~~~v~~~~~~~-----~-----~~P~~~dl~~~~e~g~~ia~k 146 (149)
T d1ycga1 77 DDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAEPGPTV-----Q-----WVPRGEDLQRCYELGRKIAAR 146 (149)
T ss_dssp HHHHHHCCSSCEEEEEEEESSSCCHHHHHHHHHHHTTCEESCSSCCEE-----E-----SSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCCEEEEEecccCCchhHHHHHHHHHHCCCEEeccceEEE-----c-----ccCCHHHHHHHHHHHHHHHHH
Confidence 777654334544333222 1 234456677888889988876441100 0 011456667777776766643
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=86.27 E-value=0.58 Score=43.09 Aligned_cols=30 Identities=23% Similarity=0.493 Sum_probs=26.8
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNR 37 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr 37 (505)
||-|.| +|.+|+.++..|.++||+|.++|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~ 32 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 687776 699999999999999999999974
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=86.20 E-value=0.26 Score=44.04 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=61.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee-eCCHHHHHhhcCCCcEEEEE------
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIIL------ 79 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~v~~l~~advIil~------ 79 (505)
.+|-=||+|. ..++..|++.|++|+++|.+++-++.+.+.....+ .++.. ..+..++-- -+.-|+|+++
T Consensus 39 ~~vLDiGCG~--G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~-~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 39 DDYLDLACGT--GNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQG-LKPRLACQDISNLNI-NRKFDLITCCLDSTNY 114 (246)
T ss_dssp TEEEEETCTT--STTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTT-CCCEEECCCGGGCCC-SCCEEEEEECTTGGGG
T ss_pred CeEEEEeCcC--CHHHHHHHHhCCccEeeccchhhhhhccccccccC-ccceeeccchhhhcc-cccccccceeeeeeec
Confidence 3688888883 34677888999999999999998776654332221 13332 344544321 1235888864
Q ss_pred cCCCchHHHHHHHHHhcCCCCc-EEEecC
Q 010637 80 VKAGSPVDQTIAALSEHMSPGD-CIIDGG 107 (505)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~-iIId~s 107 (505)
+++......++..+...|++|- +|+|..
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 2344456778888888888764 565553
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.97 E-value=0.59 Score=39.97 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=66.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhc--CCCcEEEEEcCCCc
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSI--QRPRSVIILVKAGS 84 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l--~~advIil~vp~~~ 84 (505)
+|-|.| .|-+|....+-....|.+|+...+++++.+.+.+.+... -+.......+.+..+ ++.|+||-++...
T Consensus 34 ~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~---vi~~~~~~~~~~~~~~~~gvD~vid~vgg~- 109 (176)
T d1xa0a2 34 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE---VLAREDVMAERIRPLDKQRWAAAVDPVGGR- 109 (176)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE---EEECC---------CCSCCEEEEEECSTTT-
T ss_pred EEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccce---eeecchhHHHHHHHhhccCcCEEEEcCCch-
Confidence 588888 599998888888889999999999999988887766532 111112223333322 2468888888653
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCCchh-HHHHHHHHHHCCCeEEeC
Q 010637 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLN-TERRIHEASQKGLLYLGM 131 (505)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~-t~~~~~~l~~~gi~~i~~ 131 (505)
.. +..+..+.++-.++.++...... ...... +--+++.+++.
T Consensus 110 ~~----~~~l~~l~~~Griv~~G~~~g~~~~~~~~~-~~~k~~~i~Gv 152 (176)
T d1xa0a2 110 TL----ATVLSRMRYGGAVAVSGLTGGAEVPTTVHP-FILRGVSLLGI 152 (176)
T ss_dssp TH----HHHHHTEEEEEEEEECSCCSSSCCCCCSHH-HHHTTCEEEEC
T ss_pred hH----HHHHHHhCCCceEEEeecccCcccCCCHHH-HHHCCcEEEEE
Confidence 33 34444555666666665542222 111222 22345666664
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=85.84 E-value=0.31 Score=42.45 Aligned_cols=32 Identities=13% Similarity=-0.073 Sum_probs=29.8
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
+|.|||.|.-|...|..+++.|.+|.++++++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~ 35 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE 35 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence 58999999999999999999999999999863
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.70 E-value=0.24 Score=43.49 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=30.1
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
+|.|||.|.-|..-|..+++.|.+|.++++.+
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~ 38 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG 38 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 69999999999999999999999999999764
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=85.27 E-value=1.5 Score=39.03 Aligned_cols=82 Identities=13% Similarity=0.121 Sum_probs=52.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHH---hCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEE--c
Q 010637 7 SRIGLAGL-AVMGQNLALNVA---EKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--V 80 (505)
Q Consensus 7 ~~IgIIGl-G~MG~~lA~~La---~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~--v 80 (505)
++|-|.|. .-+|..+|+.|+ +.|+.|.+.+|++++.+++.+.. +. ..++.++. +
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~------------------~~--~~~~~~~~~Dv 62 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLA------------------KN--HSNIHILEIDL 62 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHH------------------HH--CTTEEEEECCT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH------------------hc--CCcEEEEEEEe
Confidence 45877776 779999999886 57999999999998766554321 11 03344333 3
Q ss_pred CCCchHHHHHHHHHhc--CCCCcEEEecCC
Q 010637 81 KAGSPVDQTIAALSEH--MSPGDCIIDGGN 108 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~--l~~g~iIId~st 108 (505)
.+.+.++++++.+... ..+=|++|+...
T Consensus 63 s~~~~v~~~~~~i~~~~~~~~iDiLvnNAg 92 (248)
T d1snya_ 63 RNFDAYDKLVADIEGVTKDQGLNVLFNNAG 92 (248)
T ss_dssp TCGGGHHHHHHHHHHHHGGGCCSEEEECCC
T ss_pred ccHHHHHHHHhhhHHHhhcCCcceEEeecc
Confidence 4445677777766432 223367776644
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=85.12 E-value=5.7 Score=31.93 Aligned_cols=105 Identities=11% Similarity=0.008 Sum_probs=64.3
Q ss_pred CcEEEE-c--c---cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLA-G--L---AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgII-G--l---G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~v 80 (505)
.||.|| + . -.|...++..|.+.|++|.+++.+... .++....+..+|.|++..
T Consensus 3 ~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~~---------------------~~~~~~~l~~~d~vi~Gs 61 (152)
T d1e5da1 3 NKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACH---------------------HSQIMSEISDAGAVIVGS 61 (152)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSC---------------------HHHHHHHHHTCSEEEEEC
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccCC---------------------hhhhccchhhCCEEEEec
Confidence 356666 2 2 346677888888899999998866432 222222222389999999
Q ss_pred CCC-----chHHHHHHHHHhcCCCCcEEEecCC--CCchhHHHHHHHHHHCCCeEEeCC
Q 010637 81 KAG-----SPVDQTIAALSEHMSPGDCIIDGGN--EWYLNTERRIHEASQKGLLYLGMG 132 (505)
Q Consensus 81 p~~-----~~v~~vl~~l~~~l~~g~iIId~st--~~~~~t~~~~~~l~~~gi~~i~~p 132 (505)
|.. ..+...++.+...-.++..+.-.++ ........+.+.+.+.|...++.|
T Consensus 62 pt~~~~~~~~~~~~l~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~g~~~v~~~ 120 (152)
T d1e5da1 62 PTHNNGILPYVAGTLQYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPATP 120 (152)
T ss_dssp CCBTTBCCHHHHHHHHHHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCSCC
T ss_pred cccCCccCchhHHHHHHhhccCCCCCEEEEEEeeCCCCccHHHHHHHHHHCCCEEecCc
Confidence 873 3466777666543334554332222 234456677788888888776544
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=85.11 E-value=0.45 Score=43.62 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=31.5
Q ss_pred CCcCCCCcEEEE-ccc---HHHHHHHHHHHhCCCcEEEEeCChHHH
Q 010637 1 MEASALSRIGLA-GLA---VMGQNLALNVAEKGFPISVYNRTTSKV 42 (505)
Q Consensus 1 m~~~~~~~IgII-GlG---~MG~~lA~~La~~G~~V~v~dr~~~~~ 42 (505)
|.+...-|+++| |.+ -+|..+|+.|+++|.+|.+.+|+++..
T Consensus 2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~ 47 (297)
T d1d7oa_ 2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALN 47 (297)
T ss_dssp CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHH
T ss_pred CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhh
Confidence 334333355555 875 499999999999999999999987643
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.01 E-value=0.29 Score=48.19 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=30.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~-~V~v~dr~~ 39 (505)
+||.|||+|.+|..++.+|+..|+ +++++|.+.
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 589999999999999999999998 899998765
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=84.94 E-value=0.35 Score=44.51 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=30.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
-+|.|||.|.-|...|..|+++|.+|.++++.+
T Consensus 17 ~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 369999999999999999999999999999875
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=84.93 E-value=0.28 Score=43.49 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=29.2
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChHH
Q 010637 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSK 41 (505)
Q Consensus 8 ~IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~~ 41 (505)
|++|| |.+-+|..+|+.|+++|++|.+.+|+++.
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~ 37 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG 37 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence 46666 55899999999999999999999998653
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=84.90 E-value=0.3 Score=40.55 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=27.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.||.|||.|..|.-+|..|++ +++|+++++.+
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~ 32 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP 32 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence 379999999999999999965 78999998754
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=84.77 E-value=0.2 Score=47.28 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=28.4
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCC
Q 010637 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRT 38 (505)
Q Consensus 6 ~~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~ 38 (505)
||||-|.| .|.+|+.|+..|.++||+|.+++++
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d 35 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD 35 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEe
Confidence 57999998 6999999999999999987766543
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.73 E-value=0.36 Score=46.25 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=28.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNR 37 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr 37 (505)
|||-|.| .|.+|+.++..|++.||+|+++|.
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDn 33 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDN 33 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEec
Confidence 5898987 599999999999999999999984
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=84.67 E-value=0.55 Score=41.68 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=60.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCee-eeCCHHHHHhhcCCCcEEEEEc-----
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLT-GHYTPRDFVLSIQRPRSVIILV----- 80 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~-~~~s~~e~v~~l~~advIil~v----- 80 (505)
.+|-=||+|. | .++..|+++|++|+++|.+++-++.+.+.....+ .++. ...+..++--. +.-|+|+++-
T Consensus 43 ~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~-~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~ 118 (251)
T d1wzna1 43 RRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAKERN-LKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (251)
T ss_dssp CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CEEEEeCCCC-C-ccchhhcccceEEEEEeecccccccccccccccc-ccchheehhhhhcccc-cccchHhhhhhhhhc
Confidence 3688899996 4 4567899999999999999988776665433221 1232 23344433211 1247777642
Q ss_pred CCCchHHHHHHHHHhcCCCCc-EEEecCC
Q 010637 81 KAGSPVDQTIAALSEHMSPGD-CIIDGGN 108 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~-iIId~st 108 (505)
.+......++..+...|+||- +|+|..+
T Consensus 119 ~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 119 FDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 222345677788888887664 5665543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=84.34 E-value=2.8 Score=37.03 Aligned_cols=121 Identities=8% Similarity=-0.013 Sum_probs=70.2
Q ss_pred CcEEEEcccH--HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeee-e---CCHHHHHhhcCCCcEEEEEc
Q 010637 7 SRIGLAGLAV--MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-H---YTPRDFVLSIQRPRSVIILV 80 (505)
Q Consensus 7 ~~IgIIGlG~--MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~---~s~~e~v~~l~~advIil~v 80 (505)
++|-=+|+|. .-..||...- .+-.|+.+|.++..++.+.+.....+ ++.. . ..+..........|+|+..+
T Consensus 75 ~~VLDlGaGsG~~t~~la~~VG-~~G~V~aVD~s~~~l~~a~~~a~~~~--~~~~i~~d~~~~~~~~~~~~~vD~i~~d~ 151 (227)
T d1g8aa_ 75 KSVLYLGIASGTTASHVSDIVG-WEGKIFGIEFSPRVLRELVPIVEERR--NIVPILGDATKPEEYRALVPKVDVIFEDV 151 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHSSCT--TEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CEEEEeccCCCHHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHHhcC--CceEEEEECCCcccccccccceEEEEEEc
Confidence 4677787754 4344443222 23479999999999888776543221 2222 1 22222222223368888888
Q ss_pred CCCchHHHHHHHHHhcCCCCcEEEec-------CCCCchhHHHHHHHHHHCCCeEEe
Q 010637 81 KAGSPVDQTIAALSEHMSPGDCIIDG-------GNEWYLNTERRIHEASQKGLLYLG 130 (505)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~-------st~~~~~t~~~~~~l~~~gi~~i~ 130 (505)
+.....+.++..+...|++|-.++-+ ++..+....+-.+.+.+.|...++
T Consensus 152 ~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie 208 (227)
T d1g8aa_ 152 AQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIE 208 (227)
T ss_dssp CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 77667788888888888887654431 233444444434445556776654
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.19 E-value=0.44 Score=44.19 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=28.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCC
Q 010637 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRT 38 (505)
Q Consensus 7 ~~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~ 38 (505)
+||-|.| .|.+|+.++..|.++||+|.++|+.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~ 34 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF 34 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 5799997 5999999999999999999999863
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=84.14 E-value=0.41 Score=45.33 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=27.1
Q ss_pred cEE-EEc-ccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 8 RIG-LAG-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 8 ~Ig-IIG-lG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
||. |.| +|.+|+.++..|.++||+|++.||...
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~ 36 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS 36 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 566 556 799999999999999999999998543
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=83.89 E-value=0.18 Score=42.88 Aligned_cols=32 Identities=6% Similarity=0.130 Sum_probs=27.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEe
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYN 36 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~d 36 (505)
|..+|.|||.|..|..+|..|.+.|++|.+..
T Consensus 2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~ 33 (183)
T d1d7ya1 2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITV 33 (183)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCCCEEEECccHHHHHHHHHHHhcCCceEEEE
Confidence 44579999999999999999999998766554
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=83.79 E-value=0.36 Score=45.28 Aligned_cols=31 Identities=13% Similarity=0.372 Sum_probs=28.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeC
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNR 37 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr 37 (505)
-+|-|||.|.=|..+|.+|+++|++|.|.++
T Consensus 5 yDviIVGsG~aG~v~A~~La~~G~kVlvLEa 35 (379)
T d2f5va1 5 YDVVIVGSGPIGCTYARELVGAGYKVAMFDI 35 (379)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred ccEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence 3699999999999999999999999999975
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=82.99 E-value=0.85 Score=39.40 Aligned_cols=99 Identities=10% Similarity=0.096 Sum_probs=59.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCe-eeeCCHHHHHhhcCCCcEEEEEcC----
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVK---- 81 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~v~~l~~advIil~vp---- 81 (505)
.+|-=||+|. ..++..|++.|++|++.|.+++.++...+.....+ ..+ ....+..++...-..-|+|+..-.
T Consensus 39 ~~ILDiGcG~--G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~ 115 (226)
T d1ve3a1 39 GKVLDLACGV--GGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 115 (226)
T ss_dssp CEEEEETCTT--SHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CEEEEECCCc--chhhhhHhhhhcccccccccccchhhhhhhhcccc-ccccccccccccccccCcCceEEEEecchhhC
Confidence 4688899986 34667888999999999999988776654322211 112 233344433211122577776431
Q ss_pred CCchHHHHHHHHHhcCCCCc-EEEecCC
Q 010637 82 AGSPVDQTIAALSEHMSPGD-CIIDGGN 108 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~-iIId~st 108 (505)
+......++.++...|+||- ++++..+
T Consensus 116 ~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 116 EPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 11245567788888888765 5565443
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=82.97 E-value=0.51 Score=41.44 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=30.1
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.|.|||.|.-|...|..+++.|++|.++++.+
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999999999999765
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.79 E-value=0.45 Score=45.80 Aligned_cols=34 Identities=12% Similarity=0.286 Sum_probs=31.0
Q ss_pred CcEEEEcccHHHHHHHHHHHh------CCCcEEEEeCChH
Q 010637 7 SRIGLAGLAVMGQNLALNVAE------KGFPISVYNRTTS 40 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~------~G~~V~v~dr~~~ 40 (505)
-.|.|||.|.-|...|..|++ +|++|.++++...
T Consensus 33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~ 72 (380)
T d2gmha1 33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72 (380)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence 479999999999999999997 8999999998853
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=82.79 E-value=0.45 Score=41.26 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=30.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
-.|.|||.|.-|...|..+++.|.+|.++++..
T Consensus 4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~ 36 (221)
T d1dxla1 4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36 (221)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 369999999999999999999999999998764
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=82.55 E-value=0.42 Score=41.69 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=31.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC
Q 010637 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRT 38 (505)
Q Consensus 5 ~~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~ 38 (505)
+..+|-|||.|..|...|..+++.|.+|.+++++
T Consensus 4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 3457999999999999999999999999999876
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=82.18 E-value=0.53 Score=43.70 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=30.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.+|.|||.|.-|...|..|+++|++|.++++.+
T Consensus 24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~ 56 (322)
T d1d4ca2 24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP 56 (322)
T ss_dssp CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 469999999999999999999999999999875
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=82.01 E-value=0.91 Score=38.50 Aligned_cols=92 Identities=9% Similarity=-0.036 Sum_probs=59.1
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeC--C-HHHHHhh--cCCCcEEEEEcC
Q 010637 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY--T-PRDFVLS--IQRPRSVIILVK 81 (505)
Q Consensus 8 ~IgIIGl-G~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~--s-~~e~v~~--l~~advIil~vp 81 (505)
+|-|.|. |.+|...++.....|.+|+...+++++.+.+.+.+... +.... + .+.+.+. -...|+|+-++.
T Consensus 32 ~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~----vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG 107 (182)
T d1v3va2 32 TVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDA----AFNYKTVNSLEEALKKASPDGYDCYFDNVG 107 (182)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE----EEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred EEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhh----hcccccccHHHHHHHHhhcCCCceeEEecC
Confidence 5777787 77888888888888999999999999988887765431 11111 1 1222221 134788888874
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCC
Q 010637 82 AGSPVDQTIAALSEHMSPGDCIIDGGN 108 (505)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st 108 (505)
. + .++...+.+.++-.++..+.
T Consensus 108 ~-~----~~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 108 G-E----FLNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp H-H----HHHHHGGGEEEEEEEEECCC
T ss_pred c-h----hhhhhhhhccCCCeEEeecc
Confidence 2 2 34556666666666666554
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.79 E-value=0.58 Score=40.42 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=30.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 6 ~~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
..+|-|||.|..|...|..+++.|.+|.++++..
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~ 36 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence 3468999999999999999999999999998764
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=81.78 E-value=0.41 Score=40.20 Aligned_cols=33 Identities=12% Similarity=0.260 Sum_probs=29.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.+|.|||.|..|.-+|..|++.|.+|++..+.+
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~ 36 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD 36 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence 579999999999999999999999988775554
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.36 E-value=0.66 Score=42.97 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=26.7
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 9 IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
+-|.| +|.+|..|+..|.++||+|.++||..
T Consensus 4 ~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~ 35 (339)
T d1n7ha_ 4 ALITGITGQDGSYLTEFLLGKGYEVHGLIRRS 35 (339)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred EEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence 44455 69999999999999999999999854
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.78 E-value=0.57 Score=40.08 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=30.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.+|.|||.|.-|..-|..+++.|.+|.++++..
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~ 38 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM 38 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence 589999999999999999999999999998654
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=80.70 E-value=0.57 Score=36.94 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=27.2
Q ss_pred CcEEEEcccHHHHHHHHHHH---hCCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVA---EKGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La---~~G~~V~v~dr~~ 39 (505)
.+|.|||.|.+|.-+|..|. .+|.+|+++.+.+
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~ 56 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE 56 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence 47999999999999996555 4567899998765
|
| >d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Ketopantoate reductase PanE domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=80.59 E-value=1.4 Score=34.96 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=46.5
Q ss_pred hHhhHHHHHHHHHHHhCCCC--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhhCCCchHHHHHH
Q 010637 197 GDMQLISEAYDVLKHVGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQ 274 (505)
Q Consensus 197 ~~~~~i~Ea~~l~~~~g~l~--~~~i~~v~~~~~~g~~~s~l~~~~~~il~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~ 274 (505)
...+++.|+..+++..| ++ .++..+.+......... .-.++..++...+. ..+|.+.. +.++
T Consensus 36 ~~~~l~~E~~~va~a~g-~~~~~~~~~~~~~~~~~~~~~-~~sSM~qD~~~gr~-----tEid~i~G---------~vv~ 99 (124)
T d1ks9a1 36 EIMQICEEVAAVIEREG-HHTSAEDLRDYVMQVIDATAE-NISSMLQDIRALRH-----TEIDYING---------FLLR 99 (124)
T ss_dssp HHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHHHTTT-CCCHHHHHHHTTCC-----CSGGGTHH---------HHHH
T ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhccCC-CCChHHHHHHcCCc-----chHHHHHH---------HHHH
Confidence 35678899999999988 65 45555544332221111 11233345444321 35566654 5789
Q ss_pred HHHHcCCCcchHHH
Q 010637 275 QAAELSVAAPTIAA 288 (505)
Q Consensus 275 ~A~~~gvp~p~i~~ 288 (505)
.|.++|+|+|+...
T Consensus 100 ~a~~~gi~tP~~~~ 113 (124)
T d1ks9a1 100 RARAHGIAVPENTR 113 (124)
T ss_dssp HHHHHTCCCHHHHH
T ss_pred HHHHhCCCCcHHHH
Confidence 99999999999875
|
| >d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Clostridium beijerinckii [TaxId: 1520]
Probab=80.57 E-value=8.5 Score=30.18 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHhhcccCCCCeeeeCCHHHHHhhcCCCcEEEEEcCCC-------chHHH
Q 010637 16 VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG-------SPVDQ 88 (505)
Q Consensus 16 ~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~v~~l~~advIil~vp~~-------~~v~~ 88 (505)
.+...+|..|.+.|++|.+++.+.. ++.++.+ +|.+|+.+|.. ..++.
T Consensus 14 ~vA~~ia~~l~~~g~~v~~~~~~~~---------------------~~~~l~~----~~~~i~g~pt~~~g~~p~~~~~~ 68 (138)
T d5nula_ 14 KMAELIAKGIIESGKDVNTINVSDV---------------------NIDELLN----EDILILGCSAMTDEVLEESEFEP 68 (138)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEGGGC---------------------CHHHHTT----CSEEEEEECCBTTTBCCTTTHHH
T ss_pred HHHHHHHHHHHhcCCcceecccccc---------------------ccccccc----CCeEEEEEeccCCCCCChHHHHH
Confidence 3556677777778888887765421 3444433 78999888652 23566
Q ss_pred HHHHHHhcCCCCcEEE---ecCCCCchhHHHHHHHHHHCCCeEEeCCCCCCHHHhhcCCccccCCCHHHHHHHHHHHHHH
Q 010637 89 TIAALSEHMSPGDCII---DGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (505)
Q Consensus 89 vl~~l~~~l~~g~iII---d~st~~~~~t~~~~~~l~~~gi~~i~~pvsGg~~~a~~G~~im~gg~~ea~~~v~~ll~~i 165 (505)
.++.+.+.+ +|+.+. ..+.+.......+.+.+..+|...+..++. .-+.+.+..++++++-+.|
T Consensus 69 ~~~~~~~~~-~gk~~~~f~s~g~~~~~~~~~~~~~l~~~G~~~v~~~~~------------~~~~p~e~~~~~~~~g~~l 135 (138)
T d5nula_ 69 FIEEISTKI-SGKKVALFGSYGWGDGKWMRDFEERMNGYGCVVVETPLI------------VQNEPDEAEQDCIEFGKKI 135 (138)
T ss_dssp HHHHHGGGC-TTCEEEEEEEESSSCSHHHHHHHHHHHHTTCEECSCCEE------------EESSCGGGHHHHHHHHHHH
T ss_pred HHHHhCccC-CCCcEEEEEEecCCCCHHHHHHHHHHHHCCCEEecCcEE------------ECCCCcHHHHHHHHHHHHH
Confidence 666665554 343322 223333344566777888888876654421 1122345566776766666
Q ss_pred h
Q 010637 166 A 166 (505)
Q Consensus 166 g 166 (505)
+
T Consensus 136 A 136 (138)
T d5nula_ 136 A 136 (138)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=80.35 E-value=0.7 Score=38.11 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=28.2
Q ss_pred EEEE--cccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 9 IGLA--GLAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 9 IgII--GlG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
+-|+ |.|.+|..+|..|++.|.+|++..+.+.
T Consensus 42 vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 42 VVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp EEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred eEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 4444 9999999999999999999999998864
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.15 E-value=0.78 Score=42.13 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=28.8
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChH
Q 010637 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (505)
Q Consensus 8 ~IgIIG-lG~MG~~lA~~La~~G~~V~v~dr~~~ 40 (505)
+|-|.| +|.+|+.++..|.++||+|++.+|...
T Consensus 2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~ 35 (321)
T d1rpna_ 2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS 35 (321)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence 577776 599999999999999999999998653
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.11 E-value=0.57 Score=41.08 Aligned_cols=32 Identities=19% Similarity=0.066 Sum_probs=29.5
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010637 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (505)
Q Consensus 8 ~IgIIGlG~MG~~lA~~La~~G~~V~v~dr~~ 39 (505)
.|.|||.|.-|...|..+++.|.+|.+++..+
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~ 36 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT 36 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58899999999999999999999999998653
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=80.08 E-value=0.66 Score=39.42 Aligned_cols=30 Identities=17% Similarity=0.507 Sum_probs=27.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEe
Q 010637 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYN 36 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~~G~~V~v~d 36 (505)
|||||=|+|++|+.+.+.|.+.+++|...|
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~i~iv~IN 30 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRGVEVALIN 30 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEC
Confidence 589999999999999999999999988775
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=80.02 E-value=0.71 Score=36.20 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=28.2
Q ss_pred CcEEEEcccHHHHHHHHHHHh---CCCcEEEEeCCh
Q 010637 7 SRIGLAGLAVMGQNLALNVAE---KGFPISVYNRTT 39 (505)
Q Consensus 7 ~~IgIIGlG~MG~~lA~~La~---~G~~V~v~dr~~ 39 (505)
.+|.|||.|..|.-+|..|++ .|.+|+++.|.+
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~ 54 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD 54 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence 479999999999999977654 488999998875
|