Citrus Sinensis ID: 010675
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 504 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FYH7 | 631 | Vacuolar-sorting receptor | yes | no | 0.954 | 0.762 | 0.752 | 0.0 | |
| Q8L7E3 | 625 | Vacuolar-sorting receptor | no | no | 0.958 | 0.772 | 0.761 | 0.0 | |
| O64758 | 618 | Vacuolar-sorting receptor | no | no | 0.972 | 0.792 | 0.657 | 0.0 | |
| P93484 | 623 | Vacuolar-sorting receptor | N/A | no | 0.958 | 0.775 | 0.659 | 0.0 | |
| O80977 | 628 | Vacuolar-sorting receptor | no | no | 0.928 | 0.745 | 0.663 | 0.0 | |
| Q56ZQ3 | 628 | Vacuolar-sorting receptor | no | no | 0.928 | 0.745 | 0.661 | 0.0 | |
| P93026 | 623 | Vacuolar-sorting receptor | no | no | 0.948 | 0.767 | 0.653 | 0.0 | |
| O22925 | 625 | Vacuolar-sorting receptor | no | no | 0.956 | 0.771 | 0.603 | 0.0 | |
| Q90972 | 381 | E3 ubiquitin-protein liga | yes | no | 0.317 | 0.419 | 0.273 | 1e-05 | |
| O54965 | 381 | E3 ubiquitin-protein liga | yes | no | 0.317 | 0.419 | 0.257 | 9e-05 |
| >sp|Q9FYH7|VSR6_ARATH Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=3 | Back alignment and function desciption |
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Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/484 (75%), Positives = 435/484 (89%), Gaps = 3/484 (0%)
Query: 19 ALLLILTVVFSSSVSARFVVEKSSIRVLHPQSLRSKHDSAIGNFGIPDYGGFMVGSVIYP 78
AL L LT+V + V RF+VEKSS+ +L+P ++RSKHD+AI NFG+P+YGG+M+GSV+Y
Sbjct: 11 ALFLALTMVVNG-VFGRFIVEKSSVTILNPLAMRSKHDAAIANFGVPNYGGYMIGSVVYA 69
Query: 79 DKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPL 138
+GA GC F DK FK KFPRPT+L++DRGECYFALKVW+GQQ+G AAVLVAD+VDEPL
Sbjct: 70 GQGAYGCDSF--DKTFKPKFPRPTILIIDRGECYFALKVWNGQQSGVAAVLVADNVDEPL 127
Query: 139 ITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLDWTESMPHPDQR 198
ITMDSPEES +A+ ++EK+ IPSALID +F +LK+ALKKGEEVV+K+DW+ES+PHPD+R
Sbjct: 128 ITMDSPEESKEADDFIEKLNIPSALIDFSFANTLKQALKKGEEVVLKIDWSESLPHPDER 187
Query: 199 VEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQ 258
VEYELWTN+NDECG RCDEQMNFVKNFKGHAQILE+GGY+LFTPHYITW+CP+ ++ S+Q
Sbjct: 188 VEYELWTNTNDECGARCDEQMNFVKNFKGHAQILEKGGYSLFTPHYITWFCPKDYVSSNQ 247
Query: 259 CKSQCINHGRYCAPDPEQDFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFH 318
CKSQCIN GRYCAPDPEQDFG+GY GKD+VFENLRQLCVH+VA E+NRSWVWWDYVTDFH
Sbjct: 248 CKSQCINQGRYCAPDPEQDFGDGYDGKDIVFENLRQLCVHKVAKENNRSWVWWDYVTDFH 307
Query: 319 IRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGD 378
IRCSMKEK+YSKECAE V++SL LP++KI+KCIGDP+A+VENEVLK EQ QVG+G RGD
Sbjct: 308 IRCSMKEKKYSKECAERVVESLGLPLDKIKKCIGDPDANVENEVLKAEQALQVGQGDRGD 367
Query: 379 VTILPTLVINDVQYRGKLERTAVLRAICAGFKEATEPQICLTGDLETNECLERNGGCWQD 438
VTILPTL++N+ QYRGKLER AVL+AIC+GFKE TEP ICL+GD+ETNECLE NGGCW+D
Sbjct: 368 VTILPTLIVNNAQYRGKLERNAVLKAICSGFKERTEPGICLSGDIETNECLEANGGCWED 427
Query: 439 TQANITACKDTFRGRLCECPIVKGVQYRGDGYISCQAYGPARCSINNGGCWSDTKNGLTF 498
++N+TACKDTFRGR+CECP+V GVQY+GDGY SC+ YGPARCSIN GGCWS+TK GLTF
Sbjct: 428 KKSNVTACKDTFRGRVCECPVVNGVQYKGDGYTSCEPYGPARCSINQGGCWSETKKGLTF 487
Query: 499 SACS 502
SACS
Sbjct: 488 SACS 491
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Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L7E3|VSR7_ARATH Vacuolar-sorting receptor 7 OS=Arabidopsis thaliana GN=VSR7 PE=2 SV=2 | Back alignment and function description |
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| >sp|O64758|VSR5_ARATH Vacuolar-sorting receptor 5 OS=Arabidopsis thaliana GN=VSR5 PE=2 SV=1 | Back alignment and function description |
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| >sp|P93484|VSR1_PEA Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP80 PE=1 SV=1 | Back alignment and function description |
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| >sp|O80977|VSR3_ARATH Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana GN=VSR3 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q56ZQ3|VSR4_ARATH Vacuolar-sorting receptor 4 OS=Arabidopsis thaliana GN=VSR4 PE=2 SV=2 | Back alignment and function description |
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| >sp|P93026|VSR1_ARATH Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2 | Back alignment and function description |
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| >sp|O22925|VSR2_ARATH Vacuolar-sorting receptor 2 OS=Arabidopsis thaliana GN=VSR2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1 SV=1 | Back alignment and function description |
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| >sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 504 | ||||||
| 297738038 | 1197 | unnamed protein product [Vitis vinifera] | 0.982 | 0.413 | 0.804 | 0.0 | |
| 359472782 | 630 | PREDICTED: vacuolar-sorting receptor 7-l | 0.960 | 0.768 | 0.818 | 0.0 | |
| 224075371 | 630 | predicted protein [Populus trichocarpa] | 0.978 | 0.782 | 0.811 | 0.0 | |
| 356532605 | 624 | PREDICTED: vacuolar-sorting receptor 7-l | 0.966 | 0.780 | 0.793 | 0.0 | |
| 356556144 | 628 | PREDICTED: vacuolar-sorting receptor 7-l | 0.930 | 0.746 | 0.810 | 0.0 | |
| 224053657 | 642 | predicted protein [Populus trichocarpa] | 0.952 | 0.747 | 0.780 | 0.0 | |
| 297846064 | 631 | hypothetical protein ARALYDRAFT_313733 [ | 0.958 | 0.765 | 0.753 | 0.0 | |
| 15221538 | 631 | vacuolar sorting receptor 6 [Arabidopsis | 0.954 | 0.762 | 0.752 | 0.0 | |
| 15235296 | 625 | vacuolar-sorting receptor 7 [Arabidopsis | 0.958 | 0.772 | 0.761 | 0.0 | |
| 2827665 | 626 | vacuolar sorting receptor-like protein [ | 0.958 | 0.771 | 0.761 | 0.0 |
| >gi|297738038|emb|CBI27239.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/497 (80%), Positives = 456/497 (91%), Gaps = 2/497 (0%)
Query: 8 CMASSLS--KKLTALLLILTVVFSSSVSARFVVEKSSIRVLHPQSLRSKHDSAIGNFGIP 65
CM SS++ + L L++ +V RFVVEK+SI VL P +RSKHD AIGNFGIP
Sbjct: 563 CMVSSMAGLRHQLGLFLVVGMVVMRCAWGRFVVEKNSISVLAPLDMRSKHDGAIGNFGIP 622
Query: 66 DYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGA 125
+YGG MVGSV+YP KG+ GC PFEGDKPFKS+ T+LLLDRGECYFALK W+ QQAGA
Sbjct: 623 EYGGSMVGSVVYPQKGSFGCVPFEGDKPFKSRSSPTTILLLDRGECYFALKAWNAQQAGA 682
Query: 126 AAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIK 185
AAVLVADS+DEPLITMDSPEESTD++GYVEK+ IPSALIDRAFG +LK+ALKKG++V++K
Sbjct: 683 AAVLVADSIDEPLITMDSPEESTDSDGYVEKLRIPSALIDRAFGENLKQALKKGQDVLVK 742
Query: 186 LDWTESMPHPDQRVEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYI 245
LDWTESMPHPD+RVEYELWTNSNDECG RCDEQMNFV+NFKGHAQILE+ GYT FTPHYI
Sbjct: 743 LDWTESMPHPDERVEYELWTNSNDECGTRCDEQMNFVQNFKGHAQILEKLGYTQFTPHYI 802
Query: 246 TWYCPRAFILSSQCKSQCINHGRYCAPDPEQDFGEGYQGKDVVFENLRQLCVHRVANESN 305
TWYCP+AF+LS+QCKSQCINHGRYCAPDPEQ+FGEGYQGKDVVFENLRQLCVHRVANESN
Sbjct: 803 TWYCPQAFVLSNQCKSQCINHGRYCAPDPEQNFGEGYQGKDVVFENLRQLCVHRVANESN 862
Query: 306 RSWVWWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKT 365
RSWVWWDYVTDFHIRCSMKEKRYSKECAE+VMKSLDLPI+KI+KC+G+PEADV+NEVLKT
Sbjct: 863 RSWVWWDYVTDFHIRCSMKEKRYSKECAEDVMKSLDLPIDKIKKCMGNPEADVDNEVLKT 922
Query: 366 EQEFQVGRGSRGDVTILPTLVINDVQYRGKLERTAVLRAICAGFKEATEPQICLTGDLET 425
EQE QVGRGSRGDVTILPTLV+N++QYRGKLERTAVL+AICAGFKE TEPQ+CL+GDLET
Sbjct: 923 EQELQVGRGSRGDVTILPTLVVNNIQYRGKLERTAVLKAICAGFKETTEPQVCLSGDLET 982
Query: 426 NECLERNGGCWQDTQANITACKDTFRGRLCECPIVKGVQYRGDGYISCQAYGPARCSINN 485
NECLER+GGCW D+++NITACKDT+RGR+C+CP+V GVQYRGDGY+SC+A+GPARC++NN
Sbjct: 983 NECLERHGGCWHDSRSNITACKDTYRGRVCKCPVVDGVQYRGDGYVSCEAFGPARCAMNN 1042
Query: 486 GGCWSDTKNGLTFSACS 502
GGCWSDTKNG TFSACS
Sbjct: 1043 GGCWSDTKNGKTFSACS 1059
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359472782|ref|XP_002275462.2| PREDICTED: vacuolar-sorting receptor 7-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224075371|ref|XP_002304606.1| predicted protein [Populus trichocarpa] gi|222842038|gb|EEE79585.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356532605|ref|XP_003534862.1| PREDICTED: vacuolar-sorting receptor 7-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356556144|ref|XP_003546387.1| PREDICTED: vacuolar-sorting receptor 7-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224053657|ref|XP_002297915.1| predicted protein [Populus trichocarpa] gi|222845173|gb|EEE82720.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297846064|ref|XP_002890913.1| hypothetical protein ARALYDRAFT_313733 [Arabidopsis lyrata subsp. lyrata] gi|297336755|gb|EFH67172.1| hypothetical protein ARALYDRAFT_313733 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|15221538|ref|NP_174375.1| vacuolar sorting receptor 6 [Arabidopsis thaliana] gi|374095475|sp|Q9FYH7.3|VSR6_ARATH RecName: Full=Vacuolar-sorting receptor 6; Short=AtVSR6; AltName: Full=BP80-like protein d; Short=AtBP80d; AltName: Full=Epidermal growth factor receptor-like protein 6; Short=AtELP6; Flags: Precursor gi|332193170|gb|AEE31291.1| vacuolar sorting receptor 6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|15235296|ref|NP_193744.1| vacuolar-sorting receptor 7 [Arabidopsis thaliana] gi|71153407|sp|Q8L7E3.2|VSR7_ARATH RecName: Full=Vacuolar-sorting receptor 7; Short=AtVSR7; AltName: Full=BP80-like protein f; Short=AtBP80f; AltName: Full=Epidermal growth factor receptor-like protein 3; Short=AtELP3; Flags: Precursor gi|332658876|gb|AEE84276.1| vacuolar-sorting receptor 7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|2827665|emb|CAA16619.1| vacuolar sorting receptor-like protein [Arabidopsis thaliana] gi|7268806|emb|CAB79011.1| vacuolar sorting receptor-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 504 | ||||||
| TAIR|locus:2015726 | 631 | VSR6 "VACUOLAR SORTING RECEPTO | 0.916 | 0.732 | 0.741 | 1.1e-208 | |
| TAIR|locus:2044782 | 618 | VSR5 "VACUOLAR SORTING RECEPTO | 0.912 | 0.744 | 0.655 | 1.4e-181 | |
| TAIR|locus:2046911 | 628 | VSR3 "vaculolar sorting recept | 0.916 | 0.735 | 0.641 | 4.6e-176 | |
| TAIR|locus:2046931 | 628 | VSR4 "vacuolar sorting recepto | 0.916 | 0.735 | 0.639 | 1.6e-175 | |
| TAIR|locus:2085136 | 623 | VSR1 "vacuolar sorting recepto | 0.918 | 0.743 | 0.643 | 5.3e-175 |
| TAIR|locus:2015726 VSR6 "VACUOLAR SORTING RECEPTOR 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2018 (715.4 bits), Expect = 1.1e-208, P = 1.1e-208
Identities = 344/464 (74%), Positives = 411/464 (88%)
Query: 39 EKSSIRVLHPQSLRSKHDSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKF 98
EKSS+ +L+P ++RSKHD+AI NFG+P+YGG+M+GSV+Y +GA GC F DK FK KF
Sbjct: 30 EKSSVTILNPLAMRSKHDAAIANFGVPNYGGYMIGSVVYAGQGAYGCDSF--DKTFKPKF 87
Query: 99 PRPTVLLLDRGECYFALKVWHXXXXXXXXXXXXDSVDEPLITMDSPEESTDANGYVEKIG 158
PRPT+L++DRGECYFALKVW+ D+VDEPLITMDSPEES +A+ ++EK+
Sbjct: 88 PRPTILIIDRGECYFALKVWNGQQSGVAAVLVADNVDEPLITMDSPEESKEADDFIEKLN 147
Query: 159 IPSALIDRAFGLSLKEALKKGEEVVIKLDWTESMPHPDQRVEYELWTNSNDECGIRCDEQ 218
IPSALID +F +LK+ALKKGEEVV+K+DW+ES+PHPD+RVEYELWTN+NDECG RCDEQ
Sbjct: 148 IPSALIDFSFANTLKQALKKGEEVVLKIDWSESLPHPDERVEYELWTNTNDECGARCDEQ 207
Query: 219 MNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHGRYCAPDPEQDF 278
MNFVKNFKGHAQILE+GGY+LFTPHYITW+CP+ ++ S+QCKSQCIN GRYCAPDPEQDF
Sbjct: 208 MNFVKNFKGHAQILEKGGYSLFTPHYITWFCPKDYVSSNQCKSQCINQGRYCAPDPEQDF 267
Query: 279 GEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKRYSKECAEEVMK 338
G+GY GKD+VFENLRQLCVH+VA E+NRSWVWWDYVTDFHIRCSMKEK+YSKECAE V++
Sbjct: 268 GDGYDGKDIVFENLRQLCVHKVAKENNRSWVWWDYVTDFHIRCSMKEKKYSKECAERVVE 327
Query: 339 SLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGKLER 398
SL LP++KI+KCIGDP+A+VENEVLK EQ QVG+G RGDVTILPTL++N+ QYRGKLER
Sbjct: 328 SLGLPLDKIKKCIGDPDANVENEVLKAEQALQVGQGDRGDVTILPTLIVNNAQYRGKLER 387
Query: 399 TAVLRAICAGFKEATEPQICLTGDLETNECLERNGGCWQDTQANITACKDTFRGRLCECP 458
AVL+AIC+GFKE TEP ICL+GD+ETNECLE NGGCW+D ++N+TACKDTFRGR+CECP
Sbjct: 388 NAVLKAICSGFKERTEPGICLSGDIETNECLEANGGCWEDKKSNVTACKDTFRGRVCECP 447
Query: 459 IVKGVQYRGDGYISCQAYGPARCSINNGGCWSDTKNGLTFSACS 502
+V GVQY+GDGY SC+ YGPARCSIN GGCWS+TK GLTFSACS
Sbjct: 448 VVNGVQYKGDGYTSCEPYGPARCSINQGGCWSETKKGLTFSACS 491
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| TAIR|locus:2044782 VSR5 "VACUOLAR SORTING RECEPTOR 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2046911 VSR3 "vaculolar sorting receptor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2046931 VSR4 "vacuolar sorting receptor 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2085136 VSR1 "vacuolar sorting receptor homolog 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FYH7 | VSR6_ARATH | No assigned EC number | 0.7520 | 0.9543 | 0.7622 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 504 | |||
| cd02125 | 127 | cd02125, PA_VSR, PA_VSR: Protease-associated (PA) | 2e-62 | |
| cd00538 | 126 | cd00538, PA, PA: Protease-associated (PA) domain | 2e-17 | |
| cd04818 | 118 | cd04818, PA_subtilisin_1, PA_subtilisin_1: Proteas | 5e-15 | |
| cd02123 | 153 | cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-a | 1e-14 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 1e-10 | |
| cd02127 | 118 | cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease- | 4e-08 | |
| cd04816 | 122 | cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease- | 6e-08 | |
| cd02132 | 139 | cd02132, PA_GO-like, PA_GO-like: Protease-associat | 8e-08 | |
| cd02133 | 143 | cd02133, PA_C5a_like, PA_C5a_like: Protease-associ | 1e-07 | |
| cd04813 | 117 | cd04813, PA_1, PA_1: Protease-associated (PA) doma | 9e-07 | |
| cd02126 | 126 | cd02126, PA_EDEM3_like, PA_EDEM3_like: protease as | 2e-06 | |
| cd02130 | 122 | cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-as | 4e-06 | |
| cd02124 | 129 | cd02124, PA_PoS1_like, PA_PoS1_like: Protease-asso | 1e-05 | |
| cd02129 | 120 | cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-as | 1e-04 |
| >gnl|CDD|239040 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 2e-62
Identities = 78/128 (60%), Positives = 97/128 (75%), Gaps = 3/128 (2%)
Query: 61 NFGIPDYGGFMVGSVIYPDKGASGCQPFEG-DKPFKSK-FPRPTVLLLDRGECYFALKVW 118
NFG+P YGG + G V+YP + +GC+ F+ KP KS+ RP +LLLDRG C+F LK W
Sbjct: 1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAW 60
Query: 119 HGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKK 178
+ QQAGAAAVLVAD+VDEPL+TMD+PEES + Y+EKI IPSALI +AFG LK+A+
Sbjct: 61 NAQQAGAAAVLVADNVDEPLLTMDTPEES-GSADYIEKITIPSALITKAFGEKLKKAISN 119
Query: 179 GEEVVIKL 186
GE VVIKL
Sbjct: 120 GEMVVIKL 127
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This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 127 |
| >gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain | Back alignment and domain information |
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| >gnl|CDD|240122 cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
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| >gnl|CDD|239038 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
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| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
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| >gnl|CDD|239042 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
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| >gnl|CDD|240120 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
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| >gnl|CDD|239047 cd02132, PA_GO-like, PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
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| >gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
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| >gnl|CDD|240117 cd04813, PA_1, PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
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| >gnl|CDD|239041 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
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| >gnl|CDD|239045 cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
| >gnl|CDD|239039 cd02124, PA_PoS1_like, PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
| >gnl|CDD|239044 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 504 | |||
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 99.94 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 99.88 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 99.87 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 99.87 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 99.87 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 99.86 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 99.79 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 99.76 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 99.75 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 99.74 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 99.74 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 99.64 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 99.62 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 99.61 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 99.5 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 99.46 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.4 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 99.38 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 99.34 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 99.26 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.03 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 98.98 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 98.45 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 98.28 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 98.15 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 98.11 | |
| PF14670 | 36 | FXa_inhibition: Coagulation Factor Xa inhibitory s | 98.09 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 98.01 | |
| PF12947 | 36 | EGF_3: EGF domain; InterPro: IPR024731 This entry | 97.78 | |
| PF12662 | 24 | cEGF: Complement Clr-like EGF-like | 97.58 | |
| PF07645 | 42 | EGF_CA: Calcium-binding EGF domain; InterPro: IPR0 | 96.95 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 96.88 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 96.06 | |
| smart00179 | 39 | EGF_CA Calcium-binding EGF-like domain. | 95.07 | |
| KOG1219 | 4289 | consensus Uncharacterized conserved protein, conta | 95.07 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 94.64 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 94.18 | |
| KOG2195 | 702 | consensus Transferrin receptor and related protein | 93.8 | |
| KOG4289 | 2531 | consensus Cadherin EGF LAG seven-pass G-type recep | 92.95 | |
| cd03024 | 201 | DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D | 91.96 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 91.66 | |
| KOG1219 | 4289 | consensus Uncharacterized conserved protein, conta | 91.21 | |
| PF07645 | 42 | EGF_CA: Calcium-binding EGF domain; InterPro: IPR0 | 91.06 | |
| smart00181 | 35 | EGF Epidermal growth factor-like domain. | 90.74 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 89.86 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 89.69 | |
| cd03022 | 192 | DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car | 88.67 | |
| cd00053 | 36 | EGF Epidermal growth factor domain, found in epide | 88.62 | |
| KOG4260 | 350 | consensus Uncharacterized conserved protein [Funct | 88.08 | |
| PF01323 | 193 | DSBA: DSBA-like thioredoxin domain; InterPro: IPR0 | 86.46 | |
| cd00054 | 38 | EGF_CA Calcium-binding EGF-like domain, present in | 83.26 | |
| PF00008 | 32 | EGF: EGF-like domain This is a sub-family of the P | 81.13 |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=209.19 Aligned_cols=125 Identities=62% Similarity=1.037 Sum_probs=104.3
Q ss_pred ccCCCCCCCceEEEEEecCCCCCCCCCCCCCC-CCCC-CCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeCCCCCc
Q 010675 61 NFGIPDYGGFMVGSVIYPDKGASGCQPFEGDK-PFKS-KFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPL 138 (504)
Q Consensus 61 ~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~-~~~~-~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~~e~l 138 (504)
|||.|+||++++|.|+|++++.+||+++.... +.+. .+..++||||+||+|+|.+|++|||++||+||||||+.++++
T Consensus 1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~ 80 (127)
T cd02125 1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPL 80 (127)
T ss_pred CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence 79999999999999999988999999997311 1110 134589999999999999999999999999999999988878
Q ss_pred eecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCEEEEEE
Q 010675 139 ITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL 186 (504)
Q Consensus 139 ~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l 186 (504)
++|..++++. ..++..+++||+++|++++|+.|++.|++|..|++++
T Consensus 81 ~~m~~~~~~~-~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~ 127 (127)
T cd02125 81 LTMDTPEESG-SADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL 127 (127)
T ss_pred ccccCccccc-ccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence 8887654321 1134567899999999999999999999999998864
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
| >PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A | Back alignment and domain information |
|---|
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
| >PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins | Back alignment and domain information |
|---|
| >PF12662 cEGF: Complement Clr-like EGF-like | Back alignment and domain information |
|---|
| >PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins | Back alignment and domain information |
|---|
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
| >smart00179 EGF_CA Calcium-binding EGF-like domain | Back alignment and domain information |
|---|
| >KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
| >KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
| >KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif | Back alignment and domain information |
|---|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
| >KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins | Back alignment and domain information |
|---|
| >smart00181 EGF Epidermal growth factor-like domain | Back alignment and domain information |
|---|
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
| >cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway | Back alignment and domain information |
|---|
| >cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium | Back alignment and domain information |
|---|
| >KOG4260 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family [] | Back alignment and domain information |
|---|
| >cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins | Back alignment and domain information |
|---|
| >PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194 | Back alignment and structure |
|---|
Score = 81.0 bits (199), Expect = 6e-18
Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 16/146 (10%)
Query: 56 DSAIGNFGIPDYGGFMVGSVIYPD--KGASGCQP---FEGDKPFKSKFPRPTVLLLDRGE 110
S G +G + G ++ PD + C P F + S + L+ RG
Sbjct: 55 LSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGG 114
Query: 111 -CYFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFG 169
C FA K+ + GA+ ++ + + + + I + +I G
Sbjct: 115 GCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMS--------HPGAVDIVAIMIGNLKG 166
Query: 170 LSLKEALKKGEEVVIKLDWTESMPHP 195
+ +++++G +V + + H
Sbjct: 167 TKILQSIQRGIQVTMVI--EVGKKHG 190
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Length = 421 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 504 | |||
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 99.89 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 99.22 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 99.05 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 98.9 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 98.83 | |
| 2w2n_E | 107 | LDL receptor, low-density lipoprotein receptor; hy | 98.79 | |
| 1kli_L | 69 | Factor VIIA; extrinsic coagulation pathway, serine | 98.6 | |
| 1lmj_A | 86 | Fibrillin 1; EGF, calcium, microfibril, neonatal, | 98.55 | |
| 1emn_A | 82 | Fibrillin; extracellular matrix, calcium-binding, | 98.54 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.51 | |
| 2jkh_L | 55 | Factor X light chain; plasma, calcium, zymogen, se | 98.49 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.39 | |
| 1z6c_A | 87 | Vitamin K-dependent protein S; EGF module, blood c | 98.39 | |
| 1kig_L | 51 | Factor XA; glycoprotein, serine protease, plasma, | 98.38 | |
| 2bz6_L | 53 | Blood coagulation factor VIIA; serine protease, en | 98.36 | |
| 2bou_A | 143 | EGF-like module containing mucin-like hormone rece | 98.04 | |
| 2wph_E | 59 | Coagulation factor IXA light chain; serine proteas | 98.02 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.01 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.0 | |
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 97.99 | |
| 1yo8_A | 634 | Thrombospondin-2; EGF, Ca(2+)-binding domains, lec | 97.76 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 97.75 | |
| 1yo8_A | 634 | Thrombospondin-2; EGF, Ca(2+)-binding domains, lec | 97.71 | |
| 1dx5_I | 118 | Thrombomodulin; serine proteinase, EGF-like domain | 97.66 | |
| 2w86_A | 147 | Fibrillin-1, fibrillin1; phosphoprotein, EGF-like | 97.65 | |
| 1x7a_L | 146 | Coagulation factor IX, light chain; inhibition, bl | 97.63 | |
| 1nfu_B | 195 | Coagulation factor XA, light chain; hydrolase; HET | 97.62 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 97.57 | |
| 2vj3_A | 135 | Neurogenic locus notch homolog protein 1; transcri | 97.53 | |
| 1aut_L | 114 | Activated protein C; serine proteinase, plasma cal | 97.44 | |
| 1z1y_A | 186 | Ookinete surface protein PVS25; four EGF-like doma | 97.35 | |
| 1gl4_A | 285 | Nidogen-1, entactin; immunoglobulin-like domain, e | 97.32 | |
| 1uzk_A | 162 | Fibrillin-1; glycoprotein, extra-cellular matrix, | 97.24 | |
| 2vh0_B | 134 | Activated factor XA light chain; serine protease, | 97.23 | |
| 3h5c_B | 317 | Vitamin K-dependent protein Z; protein Z-protein Z | 97.21 | |
| 2c4f_L | 142 | Coagulation factor VII precursor; blood coagulatio | 97.2 | |
| 1apq_A | 53 | Complement protease C1R; EGF, calcium binding, ser | 97.2 | |
| 3f1s_B | 283 | Vitamin K-dependent protein Z; PZ, ZPI, complex, s | 97.16 | |
| 3gha_A | 202 | Disulfide bond formation protein D; BDBD, DSBA-lik | 97.13 | |
| 1aut_L | 114 | Activated protein C; serine proteinase, plasma cal | 97.07 | |
| 3bci_A | 186 | Disulfide bond protein A; thiol-disulfide oxidored | 97.02 | |
| 1z1y_A | 186 | Ookinete surface protein PVS25; four EGF-like doma | 97.0 | |
| 1x7a_L | 146 | Coagulation factor IX, light chain; inhibition, bl | 96.95 | |
| 4d90_A | 143 | EGF-like repeat and discoidin I-like domain-conta | 96.81 | |
| 2bou_A | 143 | EGF-like module containing mucin-like hormone rece | 96.78 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.67 | |
| 2vh0_B | 134 | Activated factor XA light chain; serine protease, | 96.54 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 96.46 | |
| 1nfu_B | 195 | Coagulation factor XA, light chain; hydrolase; HET | 96.46 | |
| 2vj3_A | 135 | Neurogenic locus notch homolog protein 1; transcri | 96.45 | |
| 1dx5_I | 118 | Thrombomodulin; serine proteinase, EGF-like domain | 96.37 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.23 | |
| 1szb_A | 170 | Mannose binding lectin-associated serine protease- | 96.17 | |
| 2kl7_A | 71 | Fibulin-4; secreted, calcium, disease mutation, di | 96.15 | |
| 2c4f_L | 142 | Coagulation factor VII precursor; blood coagulatio | 96.01 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 95.95 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 95.88 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 95.69 | |
| 1ob1_C | 99 | Major merozoite surface protein; immune system, im | 95.47 | |
| 1lmj_A | 86 | Fibrillin 1; EGF, calcium, microfibril, neonatal, | 95.42 | |
| 1uzk_A | 162 | Fibrillin-1; glycoprotein, extra-cellular matrix, | 95.35 | |
| 1tpg_A | 91 | T-plasminogen activator F1-G; plasminogen activati | 95.12 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 95.01 | |
| 1emn_A | 82 | Fibrillin; extracellular matrix, calcium-binding, | 94.88 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 94.83 | |
| 2w86_A | 147 | Fibrillin-1, fibrillin1; phosphoprotein, EGF-like | 94.73 | |
| 1z6c_A | 87 | Vitamin K-dependent protein S; EGF module, blood c | 94.7 | |
| 3h5c_B | 317 | Vitamin K-dependent protein Z; protein Z-protein Z | 94.69 | |
| 1n1i_A | 105 | Merozoite surface protein-1; MSP1, malaria, surfac | 94.07 | |
| 3gmf_A | 205 | Protein-disulfide isomerase; oxidoreductase, PSI-2 | 94.02 | |
| 4d90_A | 143 | EGF-like repeat and discoidin I-like domain-conta | 94.01 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 93.83 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 93.06 | |
| 1g1s_A | 162 | P-selectin; selectin, lectin, EGF, sulphated, SLEX | 93.02 | |
| 1nzi_A | 159 | Complement C1S component; calcium, innate immunity | 92.94 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 92.9 | |
| 2w2n_E | 107 | LDL receptor, low-density lipoprotein receptor; hy | 92.65 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 92.65 | |
| 3fz5_A | 202 | Possible 2-hydroxychromene-2-carboxylate isomeras; | 92.23 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 92.13 | |
| 2k2s_B | 61 | Micronemal protein 6; microneme protein complex, c | 91.74 | |
| 1edm_B | 39 | Factor IX; epidermal growth factor, EGF, calcium- | 91.41 | |
| 2imf_A | 203 | HCCA isomerase, 2-hydroxychromene-2-carboxylate is | 91.14 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 90.75 | |
| 3f4s_A | 226 | Alpha-DSBA1, putative uncharacterized protein; thi | 90.53 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 90.29 | |
| 4dvc_A | 184 | Thiol:disulfide interchange protein DSBA; pilus as | 90.23 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 90.0 | |
| 1tpg_A | 91 | T-plasminogen activator F1-G; plasminogen activati | 89.79 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 89.59 | |
| 3gl5_A | 239 | Putative DSBA oxidoreductase SCO1869; probable DSB | 89.54 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 89.11 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 87.49 | |
| 3u7u_G | 55 | Neuregulin 1; signaling protein, transferase-trans | 87.44 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 87.25 | |
| 2in3_A | 216 | Hypothetical protein; DSBA family, FRNE-like subfa | 86.24 | |
| 2vj2_A | 169 | Jagged-1; signalling, polymorphism, glycoprotein, | 85.31 | |
| 3c7m_A | 195 | Thiol:disulfide interchange protein DSBA-like; red | 83.68 | |
| 1r4w_A | 226 | Glutathione S-transferase, mitochondrial; glutathi | 82.96 | |
| 1hae_A | 63 | Heregulin-alpha; growth factor; NMR {Homo sapiens} | 81.8 | |
| 1apq_A | 53 | Complement protease C1R; EGF, calcium binding, ser | 80.68 |
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-22 Score=191.64 Aligned_cols=142 Identities=21% Similarity=0.334 Sum_probs=112.1
Q ss_pred eecCeEEEE--cCCC---cceeeeccccccCCCCCCCceEEEEEecC--CCCCCCCCCCCCC-CC--CCCCCCCeEEEEe
Q 010675 38 VEKSSIRVL--HPQS---LRSKHDSAIGNFGIPDYGGFMVGSVIYPD--KGASGCQPFEGDK-PF--KSKFPRPTVLLLD 107 (504)
Q Consensus 38 ve~~~l~V~--~P~~---l~~~~~~~~A~FG~~~yg~~l~G~lv~~~--~~~~gC~~~~~~~-~~--~~~~~~~~IvLV~ 107 (504)
.....+.|. .|.. ....+...+|+||.+.|.+.++|.|+++. ++.+||+++++.. +. .++...++||||+
T Consensus 32 ~~~A~vn~sy~d~~~~~n~t~~~~~e~a~FG~~~p~~~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~ 111 (194)
T 3icu_A 32 VWTAYLNVSWRVPHTGVNRTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQ 111 (194)
T ss_dssp EEEEEEEEEEECCSSCTTCEEEEEEEEEEECTTSCCSCEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEE
T ss_pred EEEEEEEEEEECCCCCccceeeecccccccCCCCCCCCcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEE
Confidence 344555554 4543 23357899999999999999999999976 4789999987321 11 1122358999999
Q ss_pred cCC-CChHHHHHHHHHcCCcEEEEEeCCC--CCceecCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHHcCCEEEE
Q 010675 108 RGE-CYFALKVWHGQQAGAAAVLVADSVD--EPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVI 184 (504)
Q Consensus 108 RG~-CsF~~Kv~nAQ~aGA~aVII~d~~~--e~l~tM~~p~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v 184 (504)
||+ |+|.+|++|||++||+||||||+.. +.+++|+.++ ...||++||++++|+.|+++|++|.+|++
T Consensus 112 RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~----------~~~IPsv~Is~~~G~~L~~~L~~G~~Vtv 181 (194)
T 3icu_A 112 RGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPG----------AVDIVAIMIGNLKGTKILQSIQRGIQVTM 181 (194)
T ss_dssp SCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTT----------CCSSEEEEECHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCC----------CCceeEEEECHHHHHHHHHHHHCCCeEEE
Confidence 999 9999999999999999999999852 3557886432 35799999999999999999999999999
Q ss_pred EEEec
Q 010675 185 KLDWT 189 (504)
Q Consensus 185 ~l~~~ 189 (504)
+|.+.
T Consensus 182 ti~vg 186 (194)
T 3icu_A 182 VIEVG 186 (194)
T ss_dssp EEEEE
T ss_pred EEECC
Confidence 88884
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A | Back alignment and structure |
|---|
| >1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* | Back alignment and structure |
|---|
| >1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 | Back alignment and structure |
|---|
| >1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A | Back alignment and structure |
|---|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... | Back alignment and structure |
|---|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
| >1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 | Back alignment and structure |
|---|
| >2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* | Back alignment and structure |
|---|
| >2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A | Back alignment and structure |
|---|
| >2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
| >1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* | Back alignment and structure |
|---|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
| >1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* | Back alignment and structure |
|---|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A | Back alignment and structure |
|---|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* | Back alignment and structure |
|---|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* | Back alignment and structure |
|---|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
| >2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* | Back alignment and structure |
|---|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* | Back alignment and structure |
|---|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A | Back alignment and structure |
|---|
| >1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A | Back alignment and structure |
|---|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A | Back alignment and structure |
|---|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... | Back alignment and structure |
|---|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} | Back alignment and structure |
|---|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... | Back alignment and structure |
|---|
| >1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 | Back alignment and structure |
|---|
| >3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A | Back alignment and structure |
|---|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* | Back alignment and structure |
|---|
| >3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A | Back alignment and structure |
|---|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A | Back alignment and structure |
|---|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* | Back alignment and structure |
|---|
| >4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A | Back alignment and structure |
|---|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... | Back alignment and structure |
|---|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* | Back alignment and structure |
|---|
| >2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* | Back alignment and structure |
|---|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A | Back alignment and structure |
|---|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
| >1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
| >2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... | Back alignment and structure |
|---|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
| >1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A | Back alignment and structure |
|---|
| >1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 | Back alignment and structure |
|---|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A | Back alignment and structure |
|---|
| >1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A | Back alignment and structure |
|---|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
| >1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A | Back alignment and structure |
|---|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} | Back alignment and structure |
|---|
| >1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4 | Back alignment and structure |
|---|
| >3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
| >4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
| >1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A | Back alignment and structure |
|---|
| >1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A | Back alignment and structure |
|---|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
| >3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
| >2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A | Back alignment and structure |
|---|
| >1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A | Back alignment and structure |
|---|
| >2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A* | Back alignment and structure |
|---|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
| >3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A* | Back alignment and structure |
|---|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
| >4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
| >1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A | Back alignment and structure |
|---|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
| >3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
| >3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens} | Back alignment and structure |
|---|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
| >2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea} | Back alignment and structure |
|---|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A | Back alignment and structure |
|---|
| >3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A | Back alignment and structure |
|---|
| >1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13 | Back alignment and structure |
|---|
| >1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A | Back alignment and structure |
|---|
| >1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 504 | |||
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 98.84 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 98.49 | |
| d3bpse1 | 40 | Low density lipoprotein (LDL) receptor, different | 98.4 | |
| d1autl2 | 50 | Activated protein c (autoprothrombin IIa) {Human ( | 98.37 | |
| d1kigl_ | 51 | Factor X, N-terminal module {Cow (Bos taurus) [Tax | 98.32 | |
| d2p3ua1 | 51 | Factor X, N-terminal module {Human (Homo sapiens) | 98.32 | |
| d1emoa1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.3 | |
| d1uzka1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.24 | |
| d1i0ua2 | 41 | Low density lipoprotein (LDL) receptor, different | 98.22 | |
| d1nt0a3 | 45 | Mannose-binding protein associated serine protease | 98.22 | |
| d1szba2 | 45 | Mannose-binding protein associated serine protease | 98.11 | |
| d1apqa_ | 53 | Complement protease C1R {Human (Homo sapiens) [Tax | 98.08 | |
| d1rfnb_ | 57 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 98.06 | |
| d1ijqa2 | 50 | Low density lipoprotein (LDL) receptor, different | 98.0 | |
| d1nzia2 | 42 | Complement C1S component {Human (Homo sapiens) [Ta | 97.96 | |
| d1uzka2 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.94 | |
| d1lmja1 | 44 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.87 | |
| d2bz6l1 | 53 | Coagulation factor VIIa {Human (Homo sapiens) [Tax | 97.82 | |
| d1lmja2 | 42 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.82 | |
| d1dx5i3 | 40 | Thrombomodulin, different EGF-like domains {Human | 97.46 | |
| d1gl4a2 | 40 | EGF-like domain of nidogen-1 {Mouse (Mus musculus) | 97.39 | |
| d2vj3a1 | 42 | Neurogenic locus notch homolog protein 1, Notch1 { | 96.12 | |
| d1emoa1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 96.06 | |
| d1uzka2 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 94.91 | |
| d1apqa_ | 53 | Complement protease C1R {Human (Homo sapiens) [Tax | 94.91 | |
| d1edmb_ | 39 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 93.91 | |
| d1lmja2 | 42 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 93.78 | |
| d1uzka1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 93.44 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 93.43 | |
| d2c4fl1 | 37 | Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | 93.22 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 93.11 | |
| d2vj3a2 | 39 | Neurogenic locus notch homolog protein 1, Notch1 { | 92.38 | |
| d1lmja1 | 44 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 91.92 | |
| d1dx5i3 | 40 | Thrombomodulin, different EGF-like domains {Human | 91.24 | |
| d1i0ua2 | 41 | Low density lipoprotein (LDL) receptor, different | 90.28 | |
| d1haea_ | 63 | Heregulin-alpha, EGF-like domain {Human (Homo sapi | 90.05 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 88.75 | |
| d2vj3a3 | 35 | Neurogenic locus notch homolog protein 1, Notch1 { | 88.62 | |
| d1g1sa2 | 40 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 88.6 | |
| d2vj3a1 | 42 | Neurogenic locus notch homolog protein 1, Notch1 { | 87.83 | |
| d1g1ta2 | 39 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 86.36 | |
| d1nt0a3 | 45 | Mannose-binding protein associated serine protease | 85.86 | |
| d1xkba1 | 39 | Factor X, N-terminal module {Human (Homo sapiens) | 84.72 | |
| d1szba2 | 45 | Mannose-binding protein associated serine protease | 84.72 | |
| d1autl1 | 48 | Activated protein c (autoprothrombin IIa) {Human ( | 83.83 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 83.36 | |
| d1nzia2 | 42 | Complement C1S component {Human (Homo sapiens) [Ta | 82.81 |
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=3.2e-09 Score=98.36 Aligned_cols=105 Identities=16% Similarity=0.145 Sum_probs=68.5
Q ss_pred CCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCChHHHHHHHHHcCCcEEEEEeCCCCC-c-------
Q 010675 67 YGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEP-L------- 138 (504)
Q Consensus 67 yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVII~d~~~e~-l------- 138 (504)
+.+.++|.|||+- .| ...++. .+. ....++|||++||.++|.+|++|||++||+|||||.|..+. .
T Consensus 35 ~~G~v~g~lVy~n---~G-~~~Df~-~L~-~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~ 108 (193)
T d1de4c2 35 KAATVTGKLVHAN---FG-TKKDFE-DLY-TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSF 108 (193)
T ss_dssp CCEEEEECEEECS---TT-CHHHHH-TCS-SCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCC
T ss_pred CCCceeEEEEEcc---CC-CHHHHH-Hhc-cccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCccccc
Confidence 3478999999952 22 221110 111 12349999999999999999999999999999999864221 0
Q ss_pred -eec-CCCCCC-c----c-------cCCCccccCceEEEEeHHHHHHHHHHHH
Q 010675 139 -ITM-DSPEES-T----D-------ANGYVEKIGIPSALIDRAFGLSLKEALK 177 (504)
Q Consensus 139 -~tM-~~p~d~-~----~-------~~~~~~~i~IPsv~Is~~dG~~L~~~l~ 177 (504)
-.+ ..++|- | + ......-..||+.=|+..|++.|++.|.
T Consensus 109 ~g~~~~~~GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 109 FGHAHLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp CEECCSSSSCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred ccccccCCCCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence 001 001110 0 0 0011123579999999999999999995
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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