Citrus Sinensis ID: 010702
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 503 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SH69 | 487 | 6-phosphogluconate dehydr | yes | no | 0.958 | 0.989 | 0.883 | 0.0 | |
| Q9FFR3 | 487 | 6-phosphogluconate dehydr | no | no | 0.958 | 0.989 | 0.883 | 0.0 | |
| Q94KU2 | 537 | 6-phosphogluconate dehydr | N/A | no | 0.962 | 0.901 | 0.847 | 0.0 | |
| Q94KU1 | 483 | 6-phosphogluconate dehydr | N/A | no | 0.942 | 0.981 | 0.771 | 0.0 | |
| Q9LI00 | 480 | 6-phosphogluconate dehydr | yes | no | 0.938 | 0.983 | 0.766 | 0.0 | |
| Q9FWA3 | 486 | 6-phosphogluconate dehydr | no | no | 0.942 | 0.975 | 0.756 | 0.0 | |
| Q2R480 | 508 | 6-phosphogluconate dehydr | no | no | 0.942 | 0.933 | 0.761 | 0.0 | |
| P21577 | 471 | 6-phosphogluconate dehydr | yes | no | 0.926 | 0.989 | 0.566 | 1e-154 | |
| P80859 | 469 | 6-phosphogluconate dehydr | yes | no | 0.924 | 0.991 | 0.525 | 1e-145 | |
| P52208 | 482 | 6-phosphogluconate dehydr | N/A | no | 0.918 | 0.958 | 0.536 | 1e-139 |
| >sp|Q9SH69|6PGD1_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic OS=Arabidopsis thaliana GN=At1g64190 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/482 (88%), Positives = 460/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDETLDRA EG LP++G
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRS+IILVKAG+PVDQTI A SE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A QKGLLYLGMGVSGGEEGAR+GPSLMPGGSF+AY+NI+DIL+KVAAQV+DGPCVTYIGE
Sbjct: 121 AEQKGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN ELAEIF EWN GELESFLVEIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELAEIFTEWNSGELESFLVEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+DIF+VKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK+
Sbjct: 241 SDIFRVKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKD 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AAKVL+EAGLK+E+ + +DKKRL+DDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 ERENAAKVLREAGLKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNP+LASLVVDPEFA+EMVQRQAAWRRV
Sbjct: 361 SWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLA+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER DRPG++HTEWT
Sbjct: 421 VGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 4 |
| >sp|Q9FFR3|6PGD2_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Arabidopsis thaliana GN=At5g41670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/482 (88%), Positives = 461/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME+ ALSRIGLAGLAVMGQNLALN+A+KGFPISVYNRTTSKVDETLDRA EG+LP+ G
Sbjct: 1 MESVALSRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLDRASNEGKLPVAGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRSVIILVKAG+PVDQTI+ALSE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A +KGLLYLGMGVSGGEEGAR+GPSLMPGGSF AYNN++DIL+KVAAQV+DGPCVTYIGE
Sbjct: 121 AEKKGLLYLGMGVSGGEEGARNGPSLMPGGSFTAYNNVKDILEKVAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN ELAEIF EWN+GELESFLVEIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNDELAEIFTEWNRGELESFLVEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+DIF+VKD+YG+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK+
Sbjct: 241 SDIFRVKDDYGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKD 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AAKVL+EAGLK+++ + VDKKRLIDDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 ERENAAKVLEEAGLKEDIGSASRGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSLEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GW+LN GE+ARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP+FA+EMVQRQAAWRRV
Sbjct: 361 GWDLNLGEMARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPDFAKEMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER DRPG++HTEWT
Sbjct: 421 VGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q94KU2|6PGD2_SPIOL 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Spinacia oleracea GN=pgdP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/484 (84%), Positives = 443/484 (91%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A S+IGL GLAVMGQNLALN+AEKGFPISVYNRT SKVDETLDRA EG LPL+GHYTPR
Sbjct: 47 AASQIGLVGLAVMGQNLALNIAEKGFPISVYNRTASKVDETLDRAKSEGDLPLSGHYTPR 106
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
DFVLSI+RPRS++ILVKAGSPVDQTIA+L+ M PGD IIDGGNEWY NTERR+ +A
Sbjct: 107 DFVLSIERPRSIVILVKAGSPVDQTIASLASFMEPGDTIIDGGNEWYQNTERRLSDAHSN 166
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 184
GLLYLGMGVSGGEEGAR GPSLMPGG F+AY+NI+ IL+KVAAQVDDGPCVTYIGEGGSG
Sbjct: 167 GLLYLGMGVSGGEEGARFGPSLMPGGDFQAYDNIQHILKKVAAQVDDGPCVTYIGEGGSG 226
Query: 185 NFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIF 244
NFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN EL +IFDEWNK ELESFLVEITADIF
Sbjct: 227 NFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELGQIFDEWNKSELESFLVEITADIF 286
Query: 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREK 304
KVKD+ +G LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE
Sbjct: 287 KVKDDLADGGLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREN 346
Query: 305 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNL 364
AAK+L+ AG+K+EV + VDKKRLIDDVRQALYASKICSYAQGMNLLR+KS E GW+L
Sbjct: 347 AAKILEAAGMKEEVNAIRGGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSAEMGWDL 406
Query: 365 NFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 424
N GELARIWKGGCIIRAVFLD IK+AYQRNPNLASLVVDPEFA+EMVQRQAAWRRVVGLA
Sbjct: 407 NLGELARIWKGGCIIRAVFLDSIKQAYQRNPNLASLVVDPEFAKEMVQRQAAWRRVVGLA 466
Query: 425 ISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKLPA 484
+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRD FGAHTYER+D PGS+HTEW+KL
Sbjct: 467 VSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDLPGSYHTEWSKLAR 526
Query: 485 RLVP 488
+ P
Sbjct: 527 KSDP 530
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q94KU1|6PGD1_SPIOL 6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Spinacia oleracea GN=pgdC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/476 (77%), Positives = 419/476 (88%), Gaps = 2/476 (0%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+RIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET++RA +EG LPL G + P F
Sbjct: 5 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 64
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
V SIQ+PR +I+LVKAG+PVD TI LS ++ GDCIIDGGNEWY NTERR +KGL
Sbjct: 65 VNSIQKPRVIIMLVKAGAPVDATIKTLSAYLEKGDCIIDGGNEWYENTERREKAMEEKGL 124
Query: 127 LYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 186
LYLGMGVSGGEEGAR+GPS+MPGGSF+AY NI DIL KVAAQVD GPCVTYIG+GGSGNF
Sbjct: 125 LYLGMGVSGGEEGARNGPSMMPGGSFDAYKNIEDILTKVAAQVDSGPCVTYIGKGGSGNF 184
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246
VKM+HNGIEYGDMQLI+EAYDVLK VG LSN EL E+F EWN+GEL SFL+EITADIF +
Sbjct: 185 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELKEVFAEWNRGELLSFLIEITADIFGI 244
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
KD+ GEG LVDK+LDKTGMKGTGKWTVQQAAELSVAAPTIA+SLD R+LSGLK+ER +AA
Sbjct: 245 KDDKGEGYLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIASSLDSRFLSGLKDERVEAA 304
Query: 307 KVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNF 366
KV K G++D + + VDKK+LIDDVRQALYA+KICSYAQGMNL+R+KS EK W+L
Sbjct: 305 KVFKAGGVEDTLSD--QVVDKKKLIDDVRQALYAAKICSYAQGMNLIRAKSVEKEWDLKL 362
Query: 367 GELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAIS 426
GELARIWKGGCIIRA+FLDRIKKAY RNPNL++L++DPEF++EM++RQ+AWRRVV LAI
Sbjct: 363 GELARIWKGGCIIRAMFLDRIKKAYDRNPNLSNLLIDPEFSKEMIERQSAWRRVVCLAIG 422
Query: 427 AGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
AGISTPGM +SL+YFD+YRR RLPANLVQAQRD FGAHTYERID PG+FHTEW KL
Sbjct: 423 AGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDIPGAFHTEWFKL 478
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9LI00|6PGD1_ORYSJ 6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Oryza sativa subsp. japonica GN=G6PGH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/479 (76%), Positives = 415/479 (86%), Gaps = 7/479 (1%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A++RIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET+ RA EG LP+ G + P
Sbjct: 2 AVTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDPA 61
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
FV SIQ+PR VI+LVKAG+PVDQTIA L+ H+ GDCIIDGGNEWY NTERR ++
Sbjct: 62 SFVNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEER 121
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPCVTYIGEGGS 183
GLLYLGMGVSGGEEGAR+GPSLMPGGSFEAY I DIL KVAAQV D GPCVTYIG+GGS
Sbjct: 122 GLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGS 181
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243
GNFVKMVHNGIEYGDMQLISEAYDVLK VG L+N+EL ++F EWNKGEL SFL+EITADI
Sbjct: 182 GNFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLSFLIEITADI 241
Query: 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE 303
F +KD+ G G LVDK+LDKTGMKGTGKWTVQQAAELSVAAPTI ASLD R+LSGLK+ER
Sbjct: 242 FSIKDDQGSGHLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIEASLDSRFLSGLKDERV 301
Query: 304 KAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 363
+AAKV + D N+ VDK +LI+DVRQALYASKICSYAQGMN++++KS EKGW+
Sbjct: 302 EAAKVFQ----GDFSSNL--PVDKAQLIEDVRQALYASKICSYAQGMNIIKAKSMEKGWS 355
Query: 364 LNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423
LN GELARIWKGGCIIRA+FLDRIKKAY RN +LA+L+VDPEFA+E++ RQAAWRRVV L
Sbjct: 356 LNLGELARIWKGGCIIRAIFLDRIKKAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVVCL 415
Query: 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
AI+ G+STPGM ASL+YFD+YRR RLPANLVQAQRD FGAHTYER+D PGSFHTEW K+
Sbjct: 416 AINNGVSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKI 474
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9FWA3|6GPD3_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 3 OS=Arabidopsis thaliana GN=At3g02360 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/477 (75%), Positives = 412/477 (86%), Gaps = 3/477 (0%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+RIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET++RA +EG LPL G + P F
Sbjct: 6 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFHDPESF 65
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
V SIQ+PR +I+LVKAGSPVDQTI LS ++ GDCI+DGGNEWY NTERR ++ G
Sbjct: 66 VKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAVAENGF 125
Query: 127 LYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPCVTYIGEGGSGN 185
LYLGMGVSGGEEGAR+GPS+MPGGS+EAY NI DI+ KVAAQV D GPCVTYIG+GGSGN
Sbjct: 126 LYLGMGVSGGEEGARNGPSMMPGGSYEAYKNIEDIVLKVAAQVRDSGPCVTYIGKGGSGN 185
Query: 186 FVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFK 245
FVKMVHNGIEYGDMQLI+EAYDVLK VG LSN EL +F +WNKGELESFLVEITADIF
Sbjct: 186 FVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELHSVFSDWNKGELESFLVEITADIFG 245
Query: 246 VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKA 305
+KD+ G+G LVDK+LDKTGMKGTGKWTVQQAAELSV APTI +SLD R+LSGLK+ER +A
Sbjct: 246 IKDDKGDGHLVDKVLDKTGMKGTGKWTVQQAAELSVPAPTIESSLDARFLSGLKDERVQA 305
Query: 306 AKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLN 365
AKV K G D + + VDKK+L+DDVR+ALYASKICSYAQGMNL+R+KS EKGW L
Sbjct: 306 AKVFKAGGFGDILTDQ--KVDKKQLVDDVRKALYASKICSYAQGMNLIRAKSIEKGWGLK 363
Query: 366 FGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAI 425
GELARIWKGGCIIRA+FLDRIK+AY RN LA+L+VDPEFA+E+++RQ+AWRRVV LAI
Sbjct: 364 LGELARIWKGGCIIRAIFLDRIKQAYDRNAELANLLVDPEFAKEIIERQSAWRRVVCLAI 423
Query: 426 SAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
++GISTPGM ASL+YFD+YRR RLPANLVQAQRD FGAHTYER D GSFHTEW K+
Sbjct: 424 NSGISTPGMSASLAYFDSYRRERLPANLVQAQRDYFGAHTYERTDVEGSFHTEWFKI 480
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q2R480|6PGD2_ORYSJ 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Oryza sativa subsp. japonica GN=G6PGH2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/478 (76%), Positives = 408/478 (85%), Gaps = 4/478 (0%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
RIGLAGLA MGQNLALN+AEKGFPISVYNRT +KVD T+ RA EG LP+ GH PR FV
Sbjct: 23 RIGLAGLATMGQNLALNIAEKGFPISVYNRTAAKVDATVSRAEAEGALPVLGHRDPRGFV 82
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
LS+ RPR+V++LV+AG VD TI AL ++ GD I+DGGNEWY NTERRI EA+ +G+L
Sbjct: 83 LSLSRPRTVVLLVQAGRAVDATIDALVPYLDAGDAIVDGGNEWYQNTERRIEEAAARGIL 142
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187
YLGMGVSGGEEGAR+GPSLMPGG +AYNNIRDIL+K AAQ +DG CVT++G GG+GNFV
Sbjct: 143 YLGMGVSGGEEGARNGPSLMPGGHIDAYNNIRDILEKAAAQTEDGACVTFVGPGGAGNFV 202
Query: 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVK 247
KMVHNGIEYGDMQLI+EAYDVL+ VGGLSN+E+A++F EWN+GELESFLVEITADIF V
Sbjct: 203 KMVHNGIEYGDMQLIAEAYDVLRRVGGLSNSEIADVFAEWNRGELESFLVEITADIFTVA 262
Query: 248 DEY---GEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREK 304
D G G LVDKILDKTGMKGTGKWTVQQAAEL++AAPTIAASLD RYLSGLK+ER
Sbjct: 263 DPLDGSGGGGLVDKILDKTGMKGTGKWTVQQAAELAIAAPTIAASLDGRYLSGLKDERVA 322
Query: 305 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNL 364
AA VL+ G+ + ++VDKK L+D VRQALYASKICSYAQGMNLLR+KS EKGWNL
Sbjct: 323 AAGVLEAEGMPSGLLET-INVDKKMLVDRVRQALYASKICSYAQGMNLLRAKSVEKGWNL 381
Query: 365 NFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 424
N ELARIWKGGCIIRA FLDRIKKAY RNP LA+L+VD EFAREMVQRQ AWR VV A
Sbjct: 382 NLAELARIWKGGCIIRAKFLDRIKKAYDRNPELANLIVDREFAREMVQRQNAWRWVVARA 441
Query: 425 ISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
+ AGISTPGM ASLSYFDTYR +RLPANL+QAQRDLFGAHTYERIDRPGSFHTEWTKL
Sbjct: 442 VEAGISTPGMSASLSYFDTYRCSRLPANLIQAQRDLFGAHTYERIDRPGSFHTEWTKL 499
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P21577|6PGD_SYNE7 6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4 | Back alignment and function description |
|---|
Score = 544 bits (1401), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/478 (56%), Positives = 343/478 (71%), Gaps = 12/478 (2%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL-DRAHREGQLPLTGHYTP 63
AL + GL GLAVMG+NLALN+ GF ++VYNRT K + + DRA + +P Y+
Sbjct: 2 ALQQFGLIGLAVMGENLALNIERNGFSLTVYNRTAEKTEAFMADRAQGKNIVP---AYSL 58
Query: 64 RDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ 123
DFV S++RPR ++++VKAG PVD + L + PGD IIDGGN + +TERR+ +
Sbjct: 59 EDFVASLERPRRILVMVKAGGPVDAVVEQLKPLLDPGDLIIDGGNSLFTDTERRVKDLEA 118
Query: 124 KGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGS 183
GL ++GMGVSGGEEGA +GPSLMPGG+ AY + I++ +AAQVDDGPCVTYIG GGS
Sbjct: 119 LGLGFMGMGVSGGEEGALNGPSLMPGGTQAAYEAVEPIVRSIAAQVDDGPCVTYIGPGGS 178
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKG-ELESFLVEITAD 242
G++VKMVHNGIEYGDMQLI+EAYD+LK V GL+ +EL ++F WNK EL+SFL+EITAD
Sbjct: 179 GHYVKMVHNGIEYGDMQLIAEAYDLLKSVAGLNASELHDVFAAWNKTPELDSFLIEITAD 238
Query: 243 IFKVKDEYGEGE-LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEE 301
IF D+ G G+ LV+ ILD G KGTG+WTV+ A E+ VA PTI A+++ R LS +K E
Sbjct: 239 IFTKVDDLGTGQPLVELILDAAGQKGTGRWTVETALEIGVAIPTIIAAVNARILSSIKAE 298
Query: 302 REKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKG 361
R+ A+++L +G E D++ ID VR ALY SKICSYAQGM LL S
Sbjct: 299 RQAASEIL--SGPITEP----FSGDRQAFIDSVRDALYCSKICSYAQGMALLAKASQVYN 352
Query: 362 WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVV 421
+ LN GELARIWKGGCIIRA FL++IK+AY +P LA+L++ PEF + ++ RQ AWRRV+
Sbjct: 353 YGLNLGELARIWKGGCIIRAGFLNKIKQAYDADPTLANLLLAPEFRQTILDRQLAWRRVI 412
Query: 422 GLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
+A GI P ASL YFD+YRR RLP NL QAQRD FGAHTYER DR GSFH +W
Sbjct: 413 AIAAERGIPVPAFSASLDYFDSYRRDRLPQNLTQAQRDYFGAHTYERTDRSGSFHAQW 470
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Synechococcus elongatus (strain PCC 7942) (taxid: 1140) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P80859|6PGD2_BACSU 6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis (strain 168) GN=yqjI PE=1 SV=4 | Back alignment and function description |
|---|
Score = 514 bits (1324), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/474 (52%), Positives = 336/474 (70%), Gaps = 9/474 (1%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG+ GLAVMG+NLALN+ +GF +SVYNR++SK +E L A + + G Y+ +FV
Sbjct: 5 QIGVIGLAVMGKNLALNIESRGFSVSVYNRSSSKTEEFLQEAKGKN---VVGTYSIEEFV 61
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
S++ PR ++++VKAG+ D TI +L H+ D +IDGGN +Y +T+RR E ++ G+
Sbjct: 62 QSLETPRKILLMVKAGTATDATIQSLLPHLEKDDILIDGGNTYYKDTQRRNKELAESGIH 121
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187
++G GVSGGEEGA GPS+MPGG EA+ ++ IL+ ++A+VD PC TYIG G+G++V
Sbjct: 122 FIGTGVSGGEEGALKGPSIMPGGQKEAHELVKPILEAISAKVDGEPCTTYIGPDGAGHYV 181
Query: 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVK 247
KMVHNGIEYGDMQLISE+Y +LK V GLS EL E+F EWNKGEL+S+L+EITADIF K
Sbjct: 182 KMVHNGIEYGDMQLISESYFILKQVLGLSADELHEVFAEWNKGELDSYLIEITADIFTKK 241
Query: 248 DEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAK 307
DE LVD ILDK G KGTGKWT Q A +L V P I S+ R++S +KEER KA+
Sbjct: 242 DEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLPIITESVFARFISAMKEERVKASG 301
Query: 308 VLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFG 367
+L +K +N K+ LI+ VR+AL+ SKICSYAQG +++ S E W+L +G
Sbjct: 302 LLSGPEVKPVTEN------KEELIEAVRKALFMSKICSYAQGFAQMKAASEEYNWDLKYG 355
Query: 368 ELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISA 427
E+A I++GGCIIRA FL +IK+AY R P L +L++D F + Q A R+V+ LA++
Sbjct: 356 EIAMIFRGGCIIRAAFLQKIKEAYDREPELDNLLLDSYFKNIVESYQGALRQVISLAVAQ 415
Query: 428 GISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481
G+ P ++L+Y+D+YR A LPANL+QAQRD FGAHTYER D+ G FHTEW K
Sbjct: 416 GVPVPSFSSALAYYDSYRTAVLPANLIQAQRDYFGAHTYERTDKEGIFHTEWMK 469
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P52208|6PGD_SYNY3 6-phosphogluconate dehydrogenase, decarboxylating OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gnd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 497 bits (1279), Expect = e-139, Method: Compositional matrix adjust.
Identities = 256/477 (53%), Positives = 325/477 (68%), Gaps = 15/477 (3%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
G+ GLAVMG+NLALNV +GFPI+V+NR+ +K ++ + A R + YT +FV
Sbjct: 13 FGVIGLAVMGENLALNVESRGFPIAVFNRSPNKTEKFM--AERAVGKDIKAAYTVEEFVQ 70
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
++RPR ++++VKAG PVD I L + GD IIDGGN Y +TERR + GL +
Sbjct: 71 LLERPRKILVMVKAGGPVDAVINELKPLLEEGDMIIDGGNSLYEDTERRTKDLEATGLGF 130
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG---PCVTYIGEGGSGN 185
+GMGVSGGEEGA GPSLMPGG+ AY + IL K+AAQV+D CVT+IG GG+G+
Sbjct: 131 VGMGVSGGEEGALLGPSLMPGGTPAAYKELEPILTKIAAQVEDPDNPACVTFIGPGGAGH 190
Query: 186 FVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNK-GELESFLVEITADIF 244
+VKMVHNGIEYGDMQLI+EAYD+LK+ GLSN +L E+F +WN+ EL SFL+EI+ DIF
Sbjct: 191 YVKMVHNGIEYGDMQLIAEAYDILKNGLGLSNEQLHEVFGQWNQTDELNSFLIEISTDIF 250
Query: 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREK 304
KD G L+D ILD G KGTG+WTV EL V PTI A+++ R +S LKEER
Sbjct: 251 AKKDPETGGHLIDYILDAAGQKGTGRWTVMSGLELGVPIPTIYAAVNARVMSSLKEERVA 310
Query: 305 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNL 364
A+ L +G D + I VR ALY SK+CSYAQGM L+ S E G+++
Sbjct: 311 ASGQL--SGPSKTFSG-----DVEAWIPKVRDALYCSKMCSYAQGMALIAKASQEFGYDV 363
Query: 365 NFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 424
N E+ARIWKGGCIIRA FLD+IKKA++ NP L +L++ PEF + ++ RQ WR V+ LA
Sbjct: 364 NLPEIARIWKGGCIIRAGFLDKIKKAFKDNPQLPNLLLAPEFKQSILDRQGPWREVLMLA 423
Query: 425 ISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGS--FHTEW 479
GI+ P +SL YFD+YRRA LP NL QAQRD FGAHTYER D+P FHTEW
Sbjct: 424 NEMGIAVPAFSSSLDYFDSYRRAVLPQNLTQAQRDYFGAHTYERTDKPRGEFFHTEW 480
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 503 | ||||||
| 255553267 | 495 | 6-phosphogluconate dehydrogenase, putati | 0.958 | 0.973 | 0.921 | 0.0 | |
| 225426063 | 494 | PREDICTED: 6-phosphogluconate dehydrogen | 0.958 | 0.975 | 0.912 | 0.0 | |
| 147798262 | 494 | hypothetical protein VITISV_008240 [Viti | 0.958 | 0.975 | 0.912 | 0.0 | |
| 255537671 | 495 | 6-phosphogluconate dehydrogenase, putati | 0.958 | 0.973 | 0.913 | 0.0 | |
| 356528974 | 495 | PREDICTED: 6-phosphogluconate dehydrogen | 0.958 | 0.973 | 0.888 | 0.0 | |
| 449522891 | 495 | PREDICTED: 6-phosphogluconate dehydrogen | 0.958 | 0.973 | 0.888 | 0.0 | |
| 15222639 | 487 | 6-phosphogluconate dehydrogenase [Arabid | 0.958 | 0.989 | 0.883 | 0.0 | |
| 297836953 | 487 | 6-phosphogluconate dehydrogenase family | 0.958 | 0.989 | 0.883 | 0.0 | |
| 356513305 | 495 | PREDICTED: 6-phosphogluconate dehydrogen | 0.958 | 0.973 | 0.888 | 0.0 | |
| 449464086 | 495 | PREDICTED: 6-phosphogluconate dehydrogen | 0.958 | 0.973 | 0.886 | 0.0 |
| >gi|255553267|ref|XP_002517676.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] gi|223543308|gb|EEF44840.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/483 (92%), Positives = 465/483 (96%), Gaps = 1/483 (0%)
Query: 1 MEAS-ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG 59
MEAS ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNR+TSKVDET+ RA EG PLTG
Sbjct: 1 MEASVALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRSTSKVDETIHRAQNEGPFPLTG 60
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH 119
HYTPRDFVLS+QRPRSVIILVKAG+PVDQTIAALSEHM GDCIIDGGNEWY NTERRI
Sbjct: 61 HYTPRDFVLSLQRPRSVIILVKAGAPVDQTIAALSEHMEAGDCIIDGGNEWYQNTERRID 120
Query: 120 EASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179
EA+QKGLLYLGMGVSGGEEGAR GPSLMPGGSFEAYNNI+DILQKVAAQV+DGPCVTYIG
Sbjct: 121 EANQKGLLYLGMGVSGGEEGARFGPSLMPGGSFEAYNNIKDILQKVAAQVEDGPCVTYIG 180
Query: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239
EGGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSNAELAEIF EWNKGELESFL+EI
Sbjct: 181 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNAELAEIFTEWNKGELESFLIEI 240
Query: 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
T+DIF+VKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK
Sbjct: 241 TSDIFRVKDEHGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 300
Query: 300 EEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
EERE AA+VLKEAGLK+EV+ V +DKKRLIDDVRQALYASKICSYAQGMNLLR+KS E
Sbjct: 301 EERESAAQVLKEAGLKEEVEAVKSGIDKKRLIDDVRQALYASKICSYAQGMNLLRAKSVE 360
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR
Sbjct: 361 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 420
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
VVGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW
Sbjct: 421 VVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 480
Query: 480 TKL 482
TKL
Sbjct: 481 TKL 483
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426063|ref|XP_002275970.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/482 (91%), Positives = 462/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
MEAS LSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDETLDRAHREG LPL+GH
Sbjct: 1 MEASTLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAHREGHLPLSGH 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRS++ILVKAG+PVDQTIAALSEHM GDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSIVILVKAGAPVDQTIAALSEHMEAGDCIIDGGNEWYENTERRIVE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
AS KG+LYLGMGVSGGEEGARHGPSLMPGGS++AY NI DI++KVAAQVDDGPCVTYIGE
Sbjct: 121 ASGKGILYLGMGVSGGEEGARHGPSLMPGGSYQAYQNIEDIVKKVAAQVDDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN+EL++IF EWN+GELESFL+EIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNSELSDIFGEWNRGELESFLIEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
ADIFKVKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE
Sbjct: 241 ADIFKVKDEHGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AA VL EAGLKDEV VDKKRLIDDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 EREAAAGVLSEAGLKDEVGFARSGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSVEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL+VDPEFAREMVQRQAAWRRV
Sbjct: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLIVDPEFAREMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT
Sbjct: 421 VGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147798262|emb|CAN63456.1| hypothetical protein VITISV_008240 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/482 (91%), Positives = 461/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
MEAS LSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDETLDRAHREG LPL+GH
Sbjct: 1 MEASTLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAHREGHLPLSGH 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y PRDFVLSIQRPRS++ILVKAG+PVDQTIAALSEHM GDCIIDGGNEWY NTERRI E
Sbjct: 61 YXPRDFVLSIQRPRSIVILVKAGAPVDQTIAALSEHMEAGDCIIDGGNEWYENTERRIVE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
AS KG+LYLGMGVSGGEEGARHGPSLMPGGS++AY NI DI++KVAAQVDDGPCVTYIGE
Sbjct: 121 ASGKGILYLGMGVSGGEEGARHGPSLMPGGSYQAYQNIEDIVKKVAAQVDDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN+EL++IF EWN+GELESFL+EIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNSELSDIFGEWNRGELESFLIEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
ADIFKVKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE
Sbjct: 241 ADIFKVKDEHGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AA VL EAGLKDEV VDKKRLIDDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 EREAAAGVLSEAGLKDEVGFARSGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSVEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL+VDPEFAREMVQRQAAWRRV
Sbjct: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLIVDPEFAREMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT
Sbjct: 421 VGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537671|ref|XP_002509902.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] gi|223549801|gb|EEF51289.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 912 bits (2357), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/483 (91%), Positives = 463/483 (95%), Gaps = 1/483 (0%)
Query: 1 MEAS-ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG 59
MEAS ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNR+TSKVD+T+ RA EG PLTG
Sbjct: 1 MEASVALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRSTSKVDDTIHRAQNEGPFPLTG 60
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH 119
HYTPRDFVLS+QRPRSVIILVKAG+PVDQTIAALSEHM GDCIIDGGNEWY NTERRI
Sbjct: 61 HYTPRDFVLSLQRPRSVIILVKAGAPVDQTIAALSEHMEAGDCIIDGGNEWYQNTERRID 120
Query: 120 EASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179
EA+QKG+LYLGMGVSGGEEGAR GPSLMPGGSFEAYNNI+DILQKVAAQV+DGPCVTYIG
Sbjct: 121 EANQKGILYLGMGVSGGEEGARFGPSLMPGGSFEAYNNIKDILQKVAAQVEDGPCVTYIG 180
Query: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239
EGGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSNAELA+IF EWNKGELESFL+EI
Sbjct: 181 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNAELADIFTEWNKGELESFLIEI 240
Query: 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
T+DIF+VKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK
Sbjct: 241 TSDIFRVKDEHGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 300
Query: 300 EEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
EERE AA+VLKEAGLK+EV V +DKKRLIDDVRQALYASKICSYAQGMNLLR+KS E
Sbjct: 301 EERESAAEVLKEAGLKEEVGTVKSGIDKKRLIDDVRQALYASKICSYAQGMNLLRAKSVE 360
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
K WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR
Sbjct: 361 KRWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 420
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
VVGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW
Sbjct: 421 VVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 480
Query: 480 TKL 482
TKL
Sbjct: 481 TKL 483
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528974|ref|XP_003533072.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/483 (88%), Positives = 458/483 (94%), Gaps = 1/483 (0%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRT SKVDET+DRA EG LPLTG
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTASKVDETVDRARNEGSLPLTGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
YTPRDFVLS+QRPRSVIILVKAG+PVDQTIAALS+H+ PGDCIIDGGNEWY NTERR+
Sbjct: 61 YTPRDFVLSLQRPRSVIILVKAGAPVDQTIAALSDHLDPGDCIIDGGNEWYENTERRMSL 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
+ KGLLYLGMGVSGGE+GARHGPSLMPGGS +AY+N++DIL K+AAQV+DGPCVTYIGE
Sbjct: 121 VADKGLLYLGMGVSGGEDGARHGPSLMPGGSHQAYSNVQDILHKIAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN+ELA+IF EWN+GELESFL+EIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNSELADIFAEWNRGELESFLIEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
ADIFKVKDE GEG LVDKILDKTGMKGTGKWTVQQAAELS+AAPTIAASLDCRYLSGLKE
Sbjct: 241 ADIFKVKDEDGEGFLVDKILDKTGMKGTGKWTVQQAAELSIAAPTIAASLDCRYLSGLKE 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVH-VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
ERE AA VLKEAGL DE+ V V VDKKRLIDDVRQALYASKICSYAQGMNLLR+KSNE
Sbjct: 301 ERESAAAVLKEAGLSDELGRVSVSGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSNE 360
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
KGWNLN GELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL+VDPEFAREMVQRQAAWRR
Sbjct: 361 KGWNLNLGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLIVDPEFAREMVQRQAAWRR 420
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
VVGLA+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER+DRPG+FHTEW
Sbjct: 421 VVGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRPGAFHTEW 480
Query: 480 TKL 482
TKL
Sbjct: 481 TKL 483
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522891|ref|XP_004168459.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/483 (88%), Positives = 462/483 (95%), Gaps = 1/483 (0%)
Query: 1 MEAS-ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG 59
MEAS ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET+DRAH EG LPL G
Sbjct: 1 MEASTALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVDRAHNEGNLPLFG 60
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH 119
Y PRDFVLSIQRPRSVIILVKAG PVDQTIAALS+H+ PGD IIDGGNEWY NTERRI
Sbjct: 61 QYNPRDFVLSIQRPRSVIILVKAGLPVDQTIAALSDHLEPGDAIIDGGNEWYENTERRIE 120
Query: 120 EASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179
+AS++GLLYLGMGVSGGE+GARHGPSLMPGGSF+AY+N++DIL+KVAAQVDDGPCVTYIG
Sbjct: 121 QASERGLLYLGMGVSGGEDGARHGPSLMPGGSFQAYSNVQDILKKVAAQVDDGPCVTYIG 180
Query: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239
EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN+ELA+IF EWN+GELESFL+EI
Sbjct: 181 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNSELADIFSEWNRGELESFLIEI 240
Query: 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
+ADIFKVKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELS+AAPTIAASLDCRYLSGLK
Sbjct: 241 SADIFKVKDEHGDGELVDKILDKTGMKGTGKWTVQQAAELSIAAPTIAASLDCRYLSGLK 300
Query: 300 EEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
+ERE AA+VLKEAG+ D V +V +DKK+LI+DVRQALYASKICSYAQGMNLLR+KS E
Sbjct: 301 DERESAAEVLKEAGMTDSVGSVRSGIDKKKLIEDVRQALYASKICSYAQGMNLLRAKSLE 360
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL+VDPEFAREMVQRQAAWRR
Sbjct: 361 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLLVDPEFAREMVQRQAAWRR 420
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
VVGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER+DR GS+HTEW
Sbjct: 421 VVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRQGSYHTEW 480
Query: 480 TKL 482
TKL
Sbjct: 481 TKL 483
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222639|ref|NP_176601.1| 6-phosphogluconate dehydrogenase [Arabidopsis thaliana] gi|75313449|sp|Q9SH69.1|6PGD1_ARATH RecName: Full=6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic gi|6692095|gb|AAF24560.1|AC007764_2 F22C12.5 [Arabidopsis thaliana] gi|28416567|gb|AAO42814.1| At1g64190 [Arabidopsis thaliana] gi|110743402|dbj|BAE99587.1| putative 6-phosphogluconate dehydrogenase [Arabidopsis thaliana] gi|332196086|gb|AEE34207.1| 6-phosphogluconate dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/482 (88%), Positives = 460/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDETLDRA EG LP++G
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRS+IILVKAG+PVDQTI A SE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A QKGLLYLGMGVSGGEEGAR+GPSLMPGGSF+AY+NI+DIL+KVAAQV+DGPCVTYIGE
Sbjct: 121 AEQKGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN ELAEIF EWN GELESFLVEIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELAEIFTEWNSGELESFLVEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+DIF+VKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK+
Sbjct: 241 SDIFRVKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKD 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AAKVL+EAGLK+E+ + +DKKRL+DDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 ERENAAKVLREAGLKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNP+LASLVVDPEFA+EMVQRQAAWRRV
Sbjct: 361 SWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLA+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER DRPG++HTEWT
Sbjct: 421 VGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297836953|ref|XP_002886358.1| 6-phosphogluconate dehydrogenase family protein [Arabidopsis lyrata subsp. lyrata] gi|297332199|gb|EFH62617.1| 6-phosphogluconate dehydrogenase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/482 (88%), Positives = 460/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDETLDRA EG LP++G
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRS+IILVKAG+PVDQTI A SE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A QKGLLYLGMGVSGGEEGAR+GPSLMPGGSF+AY+NI+DIL KVAAQV+DGPCVTYIGE
Sbjct: 121 AEQKGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILGKVAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGG SN ELAEIF EWN+GELESFLVEIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGFSNEELAEIFTEWNRGELESFLVEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+DIF+VKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK+
Sbjct: 241 SDIFRVKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKD 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AAKVL+EAGLK+E+ + +DKKRL+DDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 ERENAAKVLREAGLKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNP+LASLVVDPEFA+EMVQRQAAWRRV
Sbjct: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLA+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER DRPG++HTEWT
Sbjct: 421 VGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513305|ref|XP_003525354.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/483 (88%), Positives = 457/483 (94%), Gaps = 1/483 (0%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRT SKVD+T+DRA EG LPLTG
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTASKVDQTVDRARNEGSLPLTGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
YTPRDFVLS+QRPRSVIILVKAGSPVD TIAALS+H+ PGDCIIDGGNEWY NTERR++
Sbjct: 61 YTPRDFVLSLQRPRSVIILVKAGSPVDHTIAALSDHLDPGDCIIDGGNEWYENTERRMNL 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
+ KGLLYLGMGVSGGE+GARHGPSLMPGGS AY+N++DIL K+AAQV+DGPCVTYIGE
Sbjct: 121 VADKGLLYLGMGVSGGEDGARHGPSLMPGGSHHAYSNVQDILHKIAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN+ELAEIF EWN+GELESFL+EIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNSELAEIFVEWNRGELESFLIEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
ADIFKVKDE GEG LVDKILDKTGMKGTGKWTVQQAAELS+AAPTIAASLDCRYLSGLKE
Sbjct: 241 ADIFKVKDEDGEGFLVDKILDKTGMKGTGKWTVQQAAELSIAAPTIAASLDCRYLSGLKE 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVH-VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
ERE AA VLKEAGL DE+ V V VDKKRLIDDVRQALYASKICSYAQGMNLLR+KSNE
Sbjct: 301 ERESAAAVLKEAGLSDELGRVNVSGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSNE 360
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
KGWNLN GELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL+VDPEFAREMVQRQAAWRR
Sbjct: 361 KGWNLNLGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLIVDPEFAREMVQRQAAWRR 420
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
VVGLA+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER+DRPG+FHTEW
Sbjct: 421 VVGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRPGAFHTEW 480
Query: 480 TKL 482
TKL
Sbjct: 481 TKL 483
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464086|ref|XP_004149760.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2314), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/483 (88%), Positives = 462/483 (95%), Gaps = 1/483 (0%)
Query: 1 MEAS-ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG 59
MEAS ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET+DRAH EG LPL G
Sbjct: 1 MEASTALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVDRAHNEGNLPLFG 60
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH 119
Y PRDFVLSIQRPRSVIILVKAG PVDQTIAALS+H+ PGD IIDGGNEWY NTERRI
Sbjct: 61 QYNPRDFVLSIQRPRSVIILVKAGLPVDQTIAALSDHLEPGDAIIDGGNEWYENTERRIA 120
Query: 120 EASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179
+AS++G+LYLGMGVSGGE+GARHGPSLMPGGSF+AY+N++DIL+KVAAQVDDGPCVTYIG
Sbjct: 121 QASERGILYLGMGVSGGEDGARHGPSLMPGGSFQAYSNVQDILKKVAAQVDDGPCVTYIG 180
Query: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239
EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN+ELA+IF EWN+GELESFL+EI
Sbjct: 181 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNSELADIFSEWNRGELESFLIEI 240
Query: 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299
+ADIFKVKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELS+AAPTIAASLDCRYLSGLK
Sbjct: 241 SADIFKVKDEHGDGELVDKILDKTGMKGTGKWTVQQAAELSIAAPTIAASLDCRYLSGLK 300
Query: 300 EEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNE 359
+ERE AA+VLKEAG+ D V +V +DKK+LI+DVRQALYASKICSYAQGMNLLR+KS E
Sbjct: 301 DERESAAEVLKEAGMTDSVGSVRSGIDKKKLIEDVRQALYASKICSYAQGMNLLRAKSLE 360
Query: 360 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRR 419
KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL+VDPEFAREMVQRQAAWRR
Sbjct: 361 KGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLLVDPEFAREMVQRQAAWRR 420
Query: 420 VVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
VVGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER+DR GS+HTEW
Sbjct: 421 VVGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRQGSYHTEW 480
Query: 480 TKL 482
TKL
Sbjct: 481 TKL 483
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 503 | ||||||
| TAIR|locus:2024542 | 487 | AT1G64190 [Arabidopsis thalian | 0.958 | 0.989 | 0.883 | 6.6e-232 | |
| TAIR|locus:2160422 | 487 | AT5G41670 [Arabidopsis thalian | 0.958 | 0.989 | 0.883 | 1.1e-231 | |
| UNIPROTKB|Q94KU2 | 537 | pgdP "6-phosphogluconate dehyd | 0.962 | 0.901 | 0.847 | 6e-222 | |
| UNIPROTKB|Q9LI00 | 480 | G6PGH1 "6-phosphogluconate deh | 0.938 | 0.983 | 0.768 | 3.9e-195 | |
| TAIR|locus:2074577 | 486 | AT3G02360 [Arabidopsis thalian | 0.942 | 0.975 | 0.756 | 8.1e-195 | |
| UNIPROTKB|Q2R480 | 508 | G6PGH2 "6-phosphogluconate deh | 0.942 | 0.933 | 0.761 | 2.1e-194 | |
| TIGR_CMR|BA_0164 | 469 | BA_0164 "6-phosphogluconate de | 0.920 | 0.987 | 0.507 | 4.2e-127 | |
| GENEDB_PFALCIPARUM|PF14_0520 | 468 | PF14_0520 "6-phosphogluconate | 0.924 | 0.993 | 0.515 | 9.9e-126 | |
| UNIPROTKB|Q8IKT2 | 468 | PF14_0520 "6-phosphogluconate | 0.924 | 0.993 | 0.515 | 9.9e-126 | |
| UNIPROTKB|P37756 | 468 | gnd "6-phosphogluconate dehydr | 0.916 | 0.985 | 0.515 | 1.2e-122 |
| TAIR|locus:2024542 AT1G64190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2237 (792.5 bits), Expect = 6.6e-232, P = 6.6e-232
Identities = 426/482 (88%), Positives = 460/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDETLDRA EG LP++G
Sbjct: 1 MESAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRS+IILVKAG+PVDQTI A SE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A QKGLLYLGMGVSGGEEGAR+GPSLMPGGSF+AY+NI+DIL+KVAAQV+DGPCVTYIGE
Sbjct: 121 AEQKGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN ELAEIF EWN GELESFLVEIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELAEIFTEWNSGELESFLVEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+DIF+VKDE+G+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK+
Sbjct: 241 SDIFRVKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKD 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AAKVL+EAGLK+E+ + +DKKRL+DDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 ERENAAKVLREAGLKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNP+LASLVVDPEFA+EMVQRQAAWRRV
Sbjct: 361 SWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLA+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER DRPG++HTEWT
Sbjct: 421 VGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
|
| TAIR|locus:2160422 AT5G41670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2235 (791.8 bits), Expect = 1.1e-231, P = 1.1e-231
Identities = 426/482 (88%), Positives = 461/482 (95%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
ME+ ALSRIGLAGLAVMGQNLALN+A+KGFPISVYNRTTSKVDETLDRA EG+LP+ G
Sbjct: 1 MESVALSRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLDRASNEGKLPVAGQ 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
Y+PRDFVLSIQRPRSVIILVKAG+PVDQTI+ALSE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 YSPRDFVLSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A +KGLLYLGMGVSGGEEGAR+GPSLMPGGSF AYNN++DIL+KVAAQV+DGPCVTYIGE
Sbjct: 121 AEKKGLLYLGMGVSGGEEGARNGPSLMPGGSFTAYNNVKDILEKVAAQVEDGPCVTYIGE 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GGSGNFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN ELAEIF EWN+GELESFLVEIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNDELAEIFTEWNRGELESFLVEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+DIF+VKD+YG+GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK+
Sbjct: 241 SDIFRVKDDYGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKD 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ERE AAKVL+EAGLK+++ + VDKKRLIDDVRQALYASKICSYAQGMNLLR+KS EK
Sbjct: 301 ERENAAKVLEEAGLKEDIGSASRGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSLEK 360
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GW+LN GE+ARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP+FA+EMVQRQAAWRRV
Sbjct: 361 GWDLNLGEMARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPDFAKEMVQRQAAWRRV 420
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
VGLAISAGISTPGMCASL+YFDTYRRARLPANLVQAQRDLFGAHTYER DRPG++HTEWT
Sbjct: 421 VGLAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWT 480
Query: 481 KL 482
KL
Sbjct: 481 KL 482
|
|
| UNIPROTKB|Q94KU2 pgdP "6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 2143 (759.4 bits), Expect = 6.0e-222, P = 6.0e-222
Identities = 410/484 (84%), Positives = 443/484 (91%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A S+IGL GLAVMGQNLALN+AEKGFPISVYNRT SKVDETLDRA EG LPL+GHYTPR
Sbjct: 47 AASQIGLVGLAVMGQNLALNIAEKGFPISVYNRTASKVDETLDRAKSEGDLPLSGHYTPR 106
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
DFVLSI+RPRS++ILVKAGSPVDQTIA+L+ M PGD IIDGGNEWY NTERR+ +A
Sbjct: 107 DFVLSIERPRSIVILVKAGSPVDQTIASLASFMEPGDTIIDGGNEWYQNTERRLSDAHSN 166
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 184
GLLYLGMGVSGGEEGAR GPSLMPGG F+AY+NI+ IL+KVAAQVDDGPCVTYIGEGGSG
Sbjct: 167 GLLYLGMGVSGGEEGARFGPSLMPGGDFQAYDNIQHILKKVAAQVDDGPCVTYIGEGGSG 226
Query: 185 NFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIF 244
NFVKMVHNGIEYGDMQLISEAYDVLK+VGGLSN EL +IFDEWNK ELESFLVEITADIF
Sbjct: 227 NFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELGQIFDEWNKSELESFLVEITADIF 286
Query: 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREK 304
KVKD+ +G LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE
Sbjct: 287 KVKDDLADGGLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREN 346
Query: 305 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNL 364
AAK+L+ AG+K+EV + VDKKRLIDDVRQALYASKICSYAQGMNLLR+KS E GW+L
Sbjct: 347 AAKILEAAGMKEEVNAIRGGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSAEMGWDL 406
Query: 365 NFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 424
N GELARIWKGGCIIRAVFLD IK+AYQRNPNLASLVVDPEFA+EMVQRQAAWRRVVGLA
Sbjct: 407 NLGELARIWKGGCIIRAVFLDSIKQAYQRNPNLASLVVDPEFAKEMVQRQAAWRRVVGLA 466
Query: 425 ISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKLPA 484
+SAGISTPGMCASL+YFDTYRRARLPANLVQAQRD FGAHTYER+D PGS+HTEW+KL
Sbjct: 467 VSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDLPGSYHTEWSKLAR 526
Query: 485 RLVP 488
+ P
Sbjct: 527 KSDP 530
|
|
| UNIPROTKB|Q9LI00 G6PGH1 "6-phosphogluconate dehydrogenase, decarboxylating 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1890 (670.4 bits), Expect = 3.9e-195, P = 3.9e-195
Identities = 368/479 (76%), Positives = 416/479 (86%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A++RIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET+ RA EG LP+ G + P
Sbjct: 2 AVTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDPA 61
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
FV SIQ+PR VI+LVKAG+PVDQTIA L+ H+ GDCIIDGGNEWY NTERR ++
Sbjct: 62 SFVNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEER 121
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPCVTYIGEGGS 183
GLLYLGMGVSGGEEGAR+GPSLMPGGSFEAY I DIL KVAAQV D GPCVTYIG+GGS
Sbjct: 122 GLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGS 181
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243
GNFVKMVHNGIEYGDMQLISEAYDVLK VG L+N+EL ++F EWNKGEL SFL+EITADI
Sbjct: 182 GNFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLSFLIEITADI 241
Query: 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE 303
F +KD+ G G LVDK+LDKTGMKGTGKWTVQQAAELSVAAPTI ASLD R+LSGLK+ER
Sbjct: 242 FSIKDDQGSGHLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIEASLDSRFLSGLKDERV 301
Query: 304 KAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 363
+AAKV + G D N+ V DK +LI+DVRQALYASKICSYAQGMN++++KS EKGW+
Sbjct: 302 EAAKVFQ--G--DFSSNLPV--DKAQLIEDVRQALYASKICSYAQGMNIIKAKSMEKGWS 355
Query: 364 LNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423
LN GELARIWKGGCIIRA+FLDRIKKAY RN +LA+L+VDPEFA+E++ RQAAWRRVV L
Sbjct: 356 LNLGELARIWKGGCIIRAIFLDRIKKAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVVCL 415
Query: 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
AI+ G+STPGM ASL+YFD+YRR RLPANLVQAQRD FGAHTYER+D PGSFHTEW K+
Sbjct: 416 AINNGVSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKI 474
|
|
| TAIR|locus:2074577 AT3G02360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1887 (669.3 bits), Expect = 8.1e-195, P = 8.1e-195
Identities = 361/477 (75%), Positives = 412/477 (86%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+RIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET++RA +EG LPL G + P F
Sbjct: 6 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFHDPESF 65
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
V SIQ+PR +I+LVKAGSPVDQTI LS ++ GDCI+DGGNEWY NTERR ++ G
Sbjct: 66 VKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAVAENGF 125
Query: 127 LYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPCVTYIGEGGSGN 185
LYLGMGVSGGEEGAR+GPS+MPGGS+EAY NI DI+ KVAAQV D GPCVTYIG+GGSGN
Sbjct: 126 LYLGMGVSGGEEGARNGPSMMPGGSYEAYKNIEDIVLKVAAQVRDSGPCVTYIGKGGSGN 185
Query: 186 FVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFK 245
FVKMVHNGIEYGDMQLI+EAYDVLK VG LSN EL +F +WNKGELESFLVEITADIF
Sbjct: 186 FVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELHSVFSDWNKGELESFLVEITADIFG 245
Query: 246 VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKA 305
+KD+ G+G LVDK+LDKTGMKGTGKWTVQQAAELSV APTI +SLD R+LSGLK+ER +A
Sbjct: 246 IKDDKGDGHLVDKVLDKTGMKGTGKWTVQQAAELSVPAPTIESSLDARFLSGLKDERVQA 305
Query: 306 AKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLN 365
AKV K G D + + VDKK+L+DDVR+ALYASKICSYAQGMNL+R+KS EKGW L
Sbjct: 306 AKVFKAGGFGDILTDQ--KVDKKQLVDDVRKALYASKICSYAQGMNLIRAKSIEKGWGLK 363
Query: 366 FGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAI 425
GELARIWKGGCIIRA+FLDRIK+AY RN LA+L+VDPEFA+E+++RQ+AWRRVV LAI
Sbjct: 364 LGELARIWKGGCIIRAIFLDRIKQAYDRNAELANLLVDPEFAKEIIERQSAWRRVVCLAI 423
Query: 426 SAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
++GISTPGM ASL+YFD+YRR RLPANLVQAQRD FGAHTYER D GSFHTEW K+
Sbjct: 424 NSGISTPGMSASLAYFDSYRRERLPANLVQAQRDYFGAHTYERTDVEGSFHTEWFKI 480
|
|
| UNIPROTKB|Q2R480 G6PGH2 "6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1883 (667.9 bits), Expect = 2.1e-194, P = 2.1e-194
Identities = 364/478 (76%), Positives = 408/478 (85%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
RIGLAGLA MGQNLALN+AEKGFPISVYNRT +KVD T+ RA EG LP+ GH PR FV
Sbjct: 23 RIGLAGLATMGQNLALNIAEKGFPISVYNRTAAKVDATVSRAEAEGALPVLGHRDPRGFV 82
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
LS+ RPR+V++LV+AG VD TI AL ++ GD I+DGGNEWY NTERRI EA+ +G+L
Sbjct: 83 LSLSRPRTVVLLVQAGRAVDATIDALVPYLDAGDAIVDGGNEWYQNTERRIEEAAARGIL 142
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187
YLGMGVSGGEEGAR+GPSLMPGG +AYNNIRDIL+K AAQ +DG CVT++G GG+GNFV
Sbjct: 143 YLGMGVSGGEEGARNGPSLMPGGHIDAYNNIRDILEKAAAQTEDGACVTFVGPGGAGNFV 202
Query: 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVK 247
KMVHNGIEYGDMQLI+EAYDVL+ VGGLSN+E+A++F EWN+GELESFLVEITADIF V
Sbjct: 203 KMVHNGIEYGDMQLIAEAYDVLRRVGGLSNSEIADVFAEWNRGELESFLVEITADIFTVA 262
Query: 248 DEY---GEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREK 304
D G G LVDKILDKTGMKGTGKWTVQQAAEL++AAPTIAASLD RYLSGLK+ER
Sbjct: 263 DPLDGSGGGGLVDKILDKTGMKGTGKWTVQQAAELAIAAPTIAASLDGRYLSGLKDERVA 322
Query: 305 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNL 364
AA VL+ G+ + ++VDKK L+D VRQALYASKICSYAQGMNLLR+KS EKGWNL
Sbjct: 323 AAGVLEAEGMPSGLLET-INVDKKMLVDRVRQALYASKICSYAQGMNLLRAKSVEKGWNL 381
Query: 365 NFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 424
N ELARIWKGGCIIRA FLDRIKKAY RNP LA+L+VD EFAREMVQRQ AWR VV A
Sbjct: 382 NLAELARIWKGGCIIRAKFLDRIKKAYDRNPELANLIVDREFAREMVQRQNAWRWVVARA 441
Query: 425 ISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
+ AGISTPGM ASLSYFDTYR +RLPANL+QAQRDLFGAHTYERIDRPGSFHTEWTKL
Sbjct: 442 VEAGISTPGMSASLSYFDTYRCSRLPANLIQAQRDLFGAHTYERIDRPGSFHTEWTKL 499
|
|
| TIGR_CMR|BA_0164 BA_0164 "6-phosphogluconate dehydrogenase, decarboxylating" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1248 (444.4 bits), Expect = 4.2e-127, P = 4.2e-127
Identities = 240/473 (50%), Positives = 337/473 (71%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG+ G+ VMG++LALN KG+ +++Y+ + KVDET++ G+ L G + +FV
Sbjct: 5 QIGVVGVGVMGKSLALNFESKGYSVALYDISKEKVDETIEE--NRGK-NLVGTHIVEEFV 61
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
S++ PR ++++V AG D+ I +L H+ GD +IDGGN ++++T RR +++G+
Sbjct: 62 NSLESPRKILLMVNAGEITDKAIDSLVPHLDKGDILIDGGNTYFVDTIRRNKRLAEEGIN 121
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187
++G GVSGGEEGA GPS+MPGG +AY ++D+L+ ++A+V++ PC +YIG G+G++V
Sbjct: 122 FIGAGVSGGEEGALKGPSIMPGGQKDAYEKVKDMLENISAKVNNEPCCSYIGPNGAGHYV 181
Query: 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVK 247
KMVHNGIEYGDMQLI EAY LK L+ E EIF EWNKGEL S+L+EITADIFK K
Sbjct: 182 KMVHNGIEYGDMQLICEAYFFLKQTLDLTAEEFHEIFAEWNKGELNSYLIEITADIFKKK 241
Query: 248 DEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAK 307
DE LVD ILD G KGTGKWT Q A +L ++ P I S+ R +S LKEER A+K
Sbjct: 242 DEETGKPLVDVILDTAGQKGTGKWTSQSALDLGISLPIITESVFARCISALKEERVNASK 301
Query: 308 VLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFG 367
VL +G KD+ +GV +K LI+ VRQALY SKICSYAQG L++ S E WNL+FG
Sbjct: 302 VL--SGPKDKTA-IGV--EKAELIEAVRQALYMSKICSYAQGFTQLKAASEEYNWNLDFG 356
Query: 368 ELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQR-QAAWRRVVGLAIS 426
++ +W+GGCIIRA FL IK+AY+ N +L +L++DP F +E+V+ Q R+++ +A+
Sbjct: 357 SISMLWRGGCIIRAAFLQNIKEAYETNTDLPNLLLDPYF-KEIVESYQGGLRQIISMAVQ 415
Query: 427 AGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
GI P A++SY+D+YR A+LPANL+QAQRD FGAHTY+R+D+ G+FHT+W
Sbjct: 416 QGIPIPAFSAAISYYDSYRTAKLPANLLQAQRDYFGAHTYKRVDKEGTFHTKW 468
|
|
| GENEDB_PFALCIPARUM|PF14_0520 PF14_0520 "6-phosphogluconate dehydrogenase, decarboxylating, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 243/471 (51%), Positives = 320/471 (67%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
IGL GLAVMGQNL+LN++ KGF I VYNRT + +ET+ RA +E L + G+ T + +
Sbjct: 4 IGLIGLAVMGQNLSLNISSKGFKIGVYNRTYERTEETMKRA-KEENLVVYGYKTVEELIN 62
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
++++PR VI+L+KAG VD+ I+ + +H GD IIDGGNEWY+N+ERRI +K + Y
Sbjct: 63 NLKKPRKVILLIKAGPAVDENISNILKHFEKGDIIIDGGNEWYINSERRIKLCKEKDVEY 122
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK 188
L MGVSGGE GAR+G S MPGGS AY+ +++IL+K +AQV + PCVTYIG G SGN+VK
Sbjct: 123 LAMGVSGGEAGARYGCSFMPGGSKYAYDCVKEILEKCSAQVGNSPCVTYIGPGSSGNYVK 182
Query: 189 MVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKD 248
MVHNGIEYGDMQLISE+Y ++KH+ N +L+E+F++WN+G L S+L+EITA+I KD
Sbjct: 183 MVHNGIEYGDMQLISESYVIMKHILKYDNQKLSEVFNKWNEGILNSYLIEITANILAKKD 242
Query: 249 EYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKV 308
+ LVD ILD G KGTGKWT+ +A E + PT+ A+LD R +S KE R KA
Sbjct: 243 DLTNNYLVDMILDIAGAKGTGKWTMLEATERGIPCPTMCAALDARNISVFKELRTKAESN 302
Query: 309 LKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGE 368
KD + + + D +D+ ALY KI SY QG+ LL+ S E W LN GE
Sbjct: 303 FN----KDNIL-IDPNEDLNDFENDLLNALYCCKIISYTQGLFLLKQVSEEMNWKLNLGE 357
Query: 369 LARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAG 428
+ARIW+GGCIIRAVFLDRI AY+ N L L +D EF+ ++ + + R++V +A
Sbjct: 358 IARIWRGGCIIRAVFLDRIANAYKNNEKLELLFLDNEFSDDIKNKLPSLRKIVLMATKYS 417
Query: 429 ISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
I P ASL+YF LP NLVQAQRD FG+HTY R DR G++HT W
Sbjct: 418 IPIPAFSASLAYFQMVTSQNLPLNLVQAQRDYFGSHTYRRTDREGNYHTLW 468
|
|
| UNIPROTKB|Q8IKT2 PF14_0520 "6-phosphogluconate dehydrogenase, decarboxylating" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 243/471 (51%), Positives = 320/471 (67%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
IGL GLAVMGQNL+LN++ KGF I VYNRT + +ET+ RA +E L + G+ T + +
Sbjct: 4 IGLIGLAVMGQNLSLNISSKGFKIGVYNRTYERTEETMKRA-KEENLVVYGYKTVEELIN 62
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
++++PR VI+L+KAG VD+ I+ + +H GD IIDGGNEWY+N+ERRI +K + Y
Sbjct: 63 NLKKPRKVILLIKAGPAVDENISNILKHFEKGDIIIDGGNEWYINSERRIKLCKEKDVEY 122
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK 188
L MGVSGGE GAR+G S MPGGS AY+ +++IL+K +AQV + PCVTYIG G SGN+VK
Sbjct: 123 LAMGVSGGEAGARYGCSFMPGGSKYAYDCVKEILEKCSAQVGNSPCVTYIGPGSSGNYVK 182
Query: 189 MVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKD 248
MVHNGIEYGDMQLISE+Y ++KH+ N +L+E+F++WN+G L S+L+EITA+I KD
Sbjct: 183 MVHNGIEYGDMQLISESYVIMKHILKYDNQKLSEVFNKWNEGILNSYLIEITANILAKKD 242
Query: 249 EYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKV 308
+ LVD ILD G KGTGKWT+ +A E + PT+ A+LD R +S KE R KA
Sbjct: 243 DLTNNYLVDMILDIAGAKGTGKWTMLEATERGIPCPTMCAALDARNISVFKELRTKAESN 302
Query: 309 LKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGE 368
KD + + + D +D+ ALY KI SY QG+ LL+ S E W LN GE
Sbjct: 303 FN----KDNIL-IDPNEDLNDFENDLLNALYCCKIISYTQGLFLLKQVSEEMNWKLNLGE 357
Query: 369 LARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAG 428
+ARIW+GGCIIRAVFLDRI AY+ N L L +D EF+ ++ + + R++V +A
Sbjct: 358 IARIWRGGCIIRAVFLDRIANAYKNNEKLELLFLDNEFSDDIKNKLPSLRKIVLMATKYS 417
Query: 429 ISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
I P ASL+YF LP NLVQAQRD FG+HTY R DR G++HT W
Sbjct: 418 IPIPAFSASLAYFQMVTSQNLPLNLVQAQRDYFGSHTYRRTDREGNYHTLW 468
|
|
| UNIPROTKB|P37756 gnd "6-phosphogluconate dehydrogenase, decarboxylating" [Shigella flexneri (taxid:623)] | Back alignment and assigned GO terms |
|---|
Score = 1206 (429.6 bits), Expect = 1.2e-122, P = 1.2e-122
Identities = 244/473 (51%), Positives = 324/473 (68%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG+ G+AVMG+NLALN+ +G+ +S++NR+ K +E + A G+ L +YT ++FV
Sbjct: 5 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVI--AENPGK-KLAPYYTVKEFV 61
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
S++ PR ++++VKAG+ D I +L ++ GD IIDGGN ++ +T RR E S +G
Sbjct: 62 ESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 121
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 186
++G GVSGGEEGA GPS+MPGG EAY + IL K+AA +DG PCVTYIG G+G++
Sbjct: 122 FIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHY 181
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246
VKMVHNGIEYGDMQLI+EAY +LK LSN ELA+ F EWN GEL S+L++IT DIF
Sbjct: 182 VKMVHNGIEYGDMQLIAEAYSLLKGGLNLSNEELAQTFTEWNNGELSSYLIDITKDIFTK 241
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
KDE G LVD ILD+ KGTGKWT Q A +L I S+ RY+S LK++R A+
Sbjct: 242 KDEDGN-YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAAS 300
Query: 307 KVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNF 366
KVL +G + Q+ G DK I+ VR ALY KI SYAQG + LR+ S E W+LN+
Sbjct: 301 KVL--SG--PQAQSAG---DKAEFIEKVRSALYLGKIVSYAQGFSQLRAASEEYNWDLNY 353
Query: 367 GELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAIS 426
GE+A+I++ GCIIRA FL +I AY NP +A+L++ P F + Q A R VV A+
Sbjct: 354 GEIAKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQ 413
Query: 427 AGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
GI P A+++Y+D+YR A LPANL+QAQRD FGAHTY+RID+ G FHTEW
Sbjct: 414 NGIPVPTFAAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW 466
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q7VMX4 | 6PGD_HAEDU | 1, ., 1, ., 1, ., 4, 4 | 0.4821 | 0.9184 | 0.9545 | yes | no |
| P96789 | 6PGD_LACLM | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9244 | 0.9851 | yes | no |
| Q8TA03 | 6PGD_DICDI | 1, ., 1, ., 1, ., 4, 4 | 0.4905 | 0.9304 | 0.9492 | yes | no |
| P41580 | 6PGD_SHISO | 1, ., 1, ., 1, ., 4, 4 | 0.5109 | 0.8827 | 0.9977 | yes | no |
| Q6GGI7 | 6PGD_STAAR | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9165 | 0.9850 | yes | no |
| P41582 | 6PGD_CITDI | 1, ., 1, ., 1, ., 4, 4 | 0.5142 | 0.8807 | 0.9955 | yes | no |
| Q9LI00 | 6PGD1_ORYSJ | 1, ., 1, ., 1, ., 4, 4 | 0.7661 | 0.9383 | 0.9833 | yes | no |
| P53319 | 6PGD2_YEAST | 1, ., 1, ., 1, ., 4, 4 | 0.4873 | 0.9264 | 0.9471 | yes | no |
| P70718 | 6PGD_AGGAC | 1, ., 1, ., 1, ., 4, 4 | 0.4905 | 0.9184 | 0.9545 | yes | no |
| P57208 | 6PGD_BUCAI | 1, ., 1, ., 1, ., 4, 4 | 0.4556 | 0.9224 | 0.9914 | yes | no |
| P85968 | 6PGD_RAT | 1, ., 1, ., 1, ., 4, 4 | 0.5062 | 0.9284 | 0.9668 | yes | no |
| Q9FFR3 | 6PGD2_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.8838 | 0.9582 | 0.9897 | no | no |
| P00350 | 6PGD_ECOLI | 1, ., 1, ., 1, ., 4, 4 | 0.5116 | 0.9165 | 0.9850 | N/A | no |
| Q931R3 | 6PGD_STAAM | 1, ., 1, ., 1, ., 4, 4 | 0.4947 | 0.9204 | 0.9893 | yes | no |
| Q94KU1 | 6PGD1_SPIOL | 1, ., 1, ., 1, ., 4, 4 | 0.7710 | 0.9423 | 0.9813 | N/A | no |
| Q94KU2 | 6PGD2_SPIOL | 1, ., 1, ., 1, ., 4, 4 | 0.8471 | 0.9622 | 0.9013 | N/A | no |
| P63335 | 6PGD_STAAW | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9165 | 0.9850 | yes | no |
| P63334 | 6PGD_STAAN | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9165 | 0.9850 | yes | no |
| Q5HP42 | 6PGD_STAEQ | 1, ., 1, ., 1, ., 4, 4 | 0.5031 | 0.9204 | 0.9893 | yes | no |
| P41575 | 6PGD_RAOPL | 1, ., 1, ., 1, ., 4, 4 | 0.5032 | 0.8807 | 0.9955 | N/A | no |
| P52209 | 6PGD_HUMAN | 1, ., 1, ., 1, ., 4, 4 | 0.5041 | 0.9284 | 0.9668 | yes | no |
| P52208 | 6PGD_SYNY3 | 1, ., 1, ., 1, ., 4, 4 | 0.5366 | 0.9184 | 0.9585 | N/A | no |
| P37754 | 6PGD9_ECOLX | 1, ., 1, ., 1, ., 4, 4 | 0.5073 | 0.9165 | 0.9850 | yes | no |
| P37756 | 6PGD_SHIFL | 1, ., 1, ., 1, ., 4, 4 | 0.5137 | 0.9165 | 0.9850 | yes | no |
| P41574 | 6PGD_ESCVU | 1, ., 1, ., 1, ., 4, 4 | 0.5098 | 0.8807 | 0.9955 | N/A | no |
| Q9SH69 | 6PGD1_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.8838 | 0.9582 | 0.9897 | yes | no |
| P41581 | 6PGD_CITAM | 1, ., 1, ., 1, ., 4, 4 | 0.5098 | 0.8807 | 0.9955 | N/A | no |
| Q9DCD0 | 6PGD_MOUSE | 1, ., 1, ., 1, ., 4, 4 | 0.5104 | 0.9284 | 0.9668 | yes | no |
| P80859 | 6PGD2_BACSU | 1, ., 1, ., 1, ., 4, 4 | 0.5253 | 0.9244 | 0.9914 | yes | no |
| Q9FWA3 | 6GPD3_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.7568 | 0.9423 | 0.9753 | no | no |
| P41577 | 6PGD_RAOTE | 1, ., 1, ., 1, ., 4, 4 | 0.5054 | 0.8807 | 0.9955 | N/A | no |
| P41576 | 6PGD_KLEPN | 1, ., 1, ., 1, ., 4, 4 | 0.5095 | 0.9165 | 0.9850 | yes | no |
| P21577 | 6PGD_SYNE7 | 1, ., 1, ., 1, ., 4, 4 | 0.5669 | 0.9264 | 0.9893 | yes | no |
| P41573 | 6PGD_DROSI | 1, ., 1, ., 1, ., 4, 4 | 0.5020 | 0.9264 | 0.9688 | N/A | no |
| Q9ZHD9 | 6PGD_BUCAP | 1, ., 1, ., 1, ., 4, 4 | 0.4566 | 0.9184 | 0.9767 | yes | no |
| Q9CHU6 | 6PGD_LACLA | 1, ., 1, ., 1, ., 4, 4 | 0.5031 | 0.9244 | 0.9851 | yes | no |
| P41572 | 6PGD_DROME | 1, ., 1, ., 1, ., 4, 4 | 0.5020 | 0.9264 | 0.9688 | yes | no |
| P41579 | 6PGD_SHIDY | 1, ., 1, ., 1, ., 4, 4 | 0.5109 | 0.8827 | 0.9977 | yes | no |
| P41578 | 6PGD_SHIBO | 1, ., 1, ., 1, ., 4, 4 | 0.5087 | 0.8827 | 0.9977 | yes | no |
| P14062 | 6PGD_SALTY | 1, ., 1, ., 1, ., 4, 4 | 0.5137 | 0.9165 | 0.9850 | yes | no |
| Q6G954 | 6PGD_STAAS | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9165 | 0.9850 | yes | no |
| Q2R480 | 6PGD2_ORYSJ | 1, ., 1, ., 1, ., 4, 4 | 0.7615 | 0.9423 | 0.9330 | no | no |
| Q8CP47 | 6PGD_STAES | 1, ., 1, ., 1, ., 4, 4 | 0.5031 | 0.9204 | 0.9893 | yes | no |
| P00349 | 6PGD_SHEEP | 1, ., 1, ., 1, ., 4, 4 | 0.5104 | 0.9284 | 0.9668 | N/A | no |
| Q17761 | 6PGD_CAEEL | 1, ., 1, ., 1, ., 4, 4 | 0.4772 | 0.9463 | 0.9834 | yes | no |
| Q5HFR2 | 6PGD_STAAC | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9165 | 0.9850 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 503 | |||
| PLN02350 | 493 | PLN02350, PLN02350, phosphogluconate dehydrogenase | 0.0 | |
| PRK09287 | 459 | PRK09287, PRK09287, 6-phosphogluconate dehydrogena | 0.0 | |
| COG0362 | 473 | COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca | 0.0 | |
| PTZ00142 | 470 | PTZ00142, PTZ00142, 6-phosphogluconate dehydrogena | 0.0 | |
| TIGR00873 | 467 | TIGR00873, gnd, 6-phosphogluconate dehydrogenase ( | 0.0 | |
| pfam00393 | 290 | pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, | 0.0 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 8e-76 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 7e-61 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 2e-57 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 4e-57 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 3e-49 | |
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 2e-19 | |
| PRK11559 | 296 | PRK11559, garR, tartronate semialdehyde reductase; | 4e-11 | |
| TIGR01505 | 291 | TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona | 2e-10 | |
| PRK15059 | 292 | PRK15059, PRK15059, tartronate semialdehyde reduct | 2e-05 | |
| TIGR01692 | 288 | TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen | 8e-05 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 2e-04 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 0.001 | |
| PRK15461 | 296 | PRK15461, PRK15461, NADH-dependent gamma-hydroxybu | 0.001 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 0.002 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 0.002 |
| >gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 1029 bits (2662), Expect = 0.0
Identities = 414/482 (85%), Positives = 444/482 (92%), Gaps = 1/482 (0%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
M ++ALSRIGLAGLAVMGQNLALN+AEKGFPISVYNRTTSKVDET++RA +EG LPL G
Sbjct: 1 MASAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGF 60
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
P DFVLSIQ+PRSVIILVKAG+PVDQTI ALSE+M PGDCIIDGGNEWY NTERRI E
Sbjct: 61 KDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKE 120
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
A++KGLLYLGMGVSGGEEGAR+GPSLMPGGSFEAY NI DIL+KVAAQVDDGPCVTYIG
Sbjct: 121 AAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDILEKVAAQVDDGPCVTYIGP 180
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
GG+GNFVKMVHNGIEYGDMQLISEAYDVLK VGGLSN ELAE+F EWNKGELESFL+EIT
Sbjct: 181 GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEIT 240
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
ADIF VKD+ G+G LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLD RYLSGLKE
Sbjct: 241 ADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKE 300
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ER AAKV KEAGL+D + VDKK+LIDDVRQALYASKICSYAQGMNL+R+KS EK
Sbjct: 301 ERVAAAKVFKEAGLEDILSADSG-VDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEK 359
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GWNLN GELARIWKGGCIIRAVFLDRIKKAY RNP+LASL+VDPEFA+EMV+RQAAWRRV
Sbjct: 360 GWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLASLLVDPEFAKEMVERQAAWRRV 419
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
V LAI+AGISTPGM ASL+YFDTYRRARLPANLVQAQRD FGAHTYER+DRPGSFHTEWT
Sbjct: 420 VSLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEWT 479
Query: 481 KL 482
KL
Sbjct: 480 KL 481
|
Length = 493 |
| >gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 788 bits (2037), Expect = 0.0
Identities = 265/466 (56%), Positives = 335/466 (71%), Gaps = 10/466 (2%)
Query: 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76
MG+NLALN+A G+ ++VYNRT K DE L + ++ YT +FV S+++PR +
Sbjct: 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKI--VPAYTLEEFVASLEKPRKI 58
Query: 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136
+++VKAG+PVD I L + GD IIDGGN Y +T RR E ++KG+ ++GMGVSGG
Sbjct: 59 LLMVKAGAPVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGG 118
Query: 137 EEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNFVKMVHNGIE 195
EEGA HGPS+MPGG EAY + IL+K+AA+V+DG PCVTYIG G+G++VKMVHNGIE
Sbjct: 119 EEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIE 178
Query: 196 YGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGEL 255
YGDMQLI+EAYD+LK GLS E+A++F EWNKGEL S+L+EITADI + KDE L
Sbjct: 179 YGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGKPL 238
Query: 256 VDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLK 315
VD ILDK G KGTGKWT Q A +L V I ++ RYLS LK++R A+KVL K
Sbjct: 239 VDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPAAK 298
Query: 316 DEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKG 375
E DK I+DVRQALYASKI SYAQG LLR+ S E GW+L+ GE+ARIW+G
Sbjct: 299 FEG-------DKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRG 351
Query: 376 GCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMC 435
GCIIRA FL +I AY+ NP+LA+L++DP F + + Q A RRVV LA+ AGI P
Sbjct: 352 GCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFS 411
Query: 436 ASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481
++LSY+D+YR ARLPANL+QAQRD FGAHTYER D+ G FHTEW++
Sbjct: 412 SALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEWSE 457
|
Length = 459 |
| >gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 743 bits (1921), Expect = 0.0
Identities = 271/472 (57%), Positives = 340/472 (72%), Gaps = 9/472 (1%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
IG+ GLAVMG NLALN+A+ G+ ++VYNRTT K DE L + + Y+ +FV
Sbjct: 6 IGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNI--VPAYSIEEFVA 63
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
S+++PR ++++VKAG+PVD I L + GD IIDGGN Y +T RR E S+KG+L+
Sbjct: 64 SLEKPRKILLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILF 123
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK 188
+GMGVSGGEEGARHGPS+MPGG EAY + IL K+AA+VD PC T+IG G+G+FVK
Sbjct: 124 VGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVK 183
Query: 189 MVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKD 248
MVHNGIEYGDMQLI+EAYD+LK GLS E+AE+F+EWNKGEL+S+L+EITADI + KD
Sbjct: 184 MVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADILRKKD 243
Query: 249 EYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKV 308
E G LVDKILDK G KGTGKWTV A +L V I ++ RYLS LK+ER A+KV
Sbjct: 244 EEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASKV 303
Query: 309 LKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGE 368
L ++ G DK+ I+DVRQALYASKI SYAQG LLR+ S E GW+LN GE
Sbjct: 304 LA----GPKLGEPG---DKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGE 356
Query: 369 LARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAG 428
+A IW+GGCIIR+ FLD+I A+ NP LA+L++ P F + + Q + RRVV A+ AG
Sbjct: 357 IALIWRGGCIIRSKFLDKITDAFDENPELANLLLAPYFKSILEEYQQSLRRVVAYAVEAG 416
Query: 429 ISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
I P ++LSY+D+YR ARLPANL+QAQRD FGAHTYER D+ G FHT WT
Sbjct: 417 IPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWT 468
|
Length = 473 |
| >gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 697 bits (1800), Expect = 0.0
Identities = 283/474 (59%), Positives = 357/474 (75%), Gaps = 5/474 (1%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
S IGL GLAVMGQNLALN+A +GF ISVYNRT K +E + +A +EG + G++T +
Sbjct: 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKA-KEGNTRVKGYHTLEEL 60
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
V S+++PR VI+L+KAG VD+TI L + GD IIDGGNEWYLNTERRI +KG+
Sbjct: 61 VNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGI 120
Query: 127 LYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 186
LYLGMGVSGGEEGAR+GPSLMPGG+ EAY++++DIL+K +A+V D PCVTY+G G SG++
Sbjct: 121 LYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHY 180
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246
VKMVHNGIEYGDMQLISE+Y ++KH+ G+SN EL+E+F++WN+G L S+L+EITA I
Sbjct: 181 VKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKILAK 240
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
KD+ GE LVDKILD G KGTGKWTVQ+A E + PT+AAS+D R +S LKEER KA+
Sbjct: 241 KDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKAS 300
Query: 307 KVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNF 366
L ++ + DKK IDD++ ALY SKI SY QG L++ S E GWNLN
Sbjct: 301 SHLAGPNPANKTET----EDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNL 356
Query: 367 GELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAIS 426
GE+ARIW+GGCIIRAVFLDRIK A+++NP L L +DP+F E+ +Q +WR+VV +A
Sbjct: 357 GEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDFNDELKNKQPSWRKVVSMATK 416
Query: 427 AGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
GI TP ASL+Y+ YR LPANLVQAQRD FGAHTY+R+DRPG+FHT W
Sbjct: 417 NGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470
|
Length = 470 |
| >gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 681 bits (1760), Expect = 0.0
Identities = 277/474 (58%), Positives = 337/474 (71%), Gaps = 11/474 (2%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
IG+ GLAVMG NLALN+A+ GF +SVYNRT K DE L H +G+ + G Y+ +FV
Sbjct: 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFL-AEHAKGK-KIVGAYSIEEFVQ 59
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
S++RPR ++++VKAG+PVD I L + GD IIDGGN Y +TERR E KG+L+
Sbjct: 60 SLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILF 119
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK 188
+G GVSGGEEGAR GPS+MPGGS EA+ + I QK+AA+VD PC T+IG G+G++VK
Sbjct: 120 VGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVK 179
Query: 189 MVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKD 248
MVHNGIEYGDMQLI EAYD+LK GLSN E+AE+F EWN GEL+S+L+EITADI K KD
Sbjct: 180 MVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILKKKD 239
Query: 249 EYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKV 308
E G+ LVDKILD G KGTGKWT A +L V I S+ RYLS LKEER A+KV
Sbjct: 240 EDGK-PLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKV 298
Query: 309 LKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGE 368
L + VDK+ I+DVRQALYASKI SYAQG LLR S E GW+LN GE
Sbjct: 299 LSGPLAPEP------AVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGE 352
Query: 369 LARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAG 428
+A IW+GGCIIR+ FLD+I KA+ NP+LA+L++ P F + Q+ WRRVV LAI G
Sbjct: 353 IALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYG 412
Query: 429 ISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGS--FHTEWT 480
I P A+LS++D YR ARLPANL+QAQRD FGAHTYER D+P FHT WT
Sbjct: 413 IPVPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWT 466
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason [Energy metabolism, Pentose phosphate pathway]. Length = 467 |
| >gnl|CDD|215895 pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, C-terminal domain | Back alignment and domain information |
|---|
Score = 532 bits (1373), Expect = 0.0
Identities = 189/297 (63%), Positives = 228/297 (76%), Gaps = 7/297 (2%)
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243
G++VKMVHNGIEYGDMQLI+EAYD+LK V GLSN E+A++F+EWNKGEL+S+L+EITADI
Sbjct: 1 GHYVKMVHNGIEYGDMQLIAEAYDLLKTVLGLSNDEIADVFEEWNKGELDSYLIEITADI 60
Query: 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE 303
+ KDE G+ LVDKILDK G KGTGKWTVQ A EL V P I ++ RYLS LKEER
Sbjct: 61 LRKKDEDGKP-LVDKILDKAGQKGTGKWTVQSALELGVPVPLITEAVFARYLSSLKEERV 119
Query: 304 KAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 363
A+KVL G K DK I+DVRQALYASKI SYAQG LLR+ S E GWN
Sbjct: 120 AASKVLS--GPKAAKD----KGDKAEFIEDVRQALYASKIVSYAQGFMLLRAASKEYGWN 173
Query: 364 LNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423
LN GE+ARIW+GGCIIRA FLD+IK AY++NP+L +L++DP F +E+ + Q +WRRVV +
Sbjct: 174 LNLGEIARIWRGGCIIRAQFLDKIKDAYEKNPDLPNLLLDPYFKKEIKEYQQSWRRVVAI 233
Query: 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480
A+ AGI P ++LSY+D+YR RLPANL+QAQRD FGAHTYER D+ G FHT WT
Sbjct: 234 AVEAGIPVPAFSSALSYYDSYRTERLPANLIQAQRDYFGAHTYERTDKEGFFHTNWT 290
|
This family represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. Length = 290 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 8e-76
Identities = 108/303 (35%), Positives = 168/303 (55%), Gaps = 20/303 (6%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G+ GL MG N+A + G + Y+R V+ EG TG + + V
Sbjct: 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEA----LAEEG---ATGADSLEELV 54
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
+ PR V ++V AG D TI L+ +SPGD +IDGGN +Y + RR ++KG+
Sbjct: 55 AKLPAPRVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH 114
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187
++ +G SGG G G LM GG EA + I + +A + +DG + G G+G+FV
Sbjct: 115 FVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALAPRAEDG--YLHAGPVGAGHFV 172
Query: 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGE-LESFLVEITADIFKV 246
KMVHNGIEYG MQ +E +++L+ + +LA + + W +G + S+L+++TAD
Sbjct: 173 KMVHNGIEYGMMQAYAEGFELLEASR--FDLDLAAVAEVWRRGSVIRSWLLDLTADALA- 229
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
+D +L D+I G G+WTV++A +L+V AP IAA+L R+ S ++E A
Sbjct: 230 ED----PKL-DEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRS--RQEDSFAD 282
Query: 307 KVL 309
KV+
Sbjct: 283 KVV 285
|
Length = 301 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 7e-61
Identities = 118/321 (36%), Positives = 175/321 (54%), Gaps = 26/321 (8%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
IG+ GL MG NL + + G + Y+ + V+E D EG + + V
Sbjct: 3 IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD----EGATGAA---SLDELVA 55
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
+ PR V ++V AG D I L+ +S GD +IDGGN Y ++ RR ++KG+ +
Sbjct: 56 KLSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHF 115
Query: 129 LGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK 188
L +G SGG GA G LM GG EA + I + +A +DG Y G GSG+FVK
Sbjct: 116 LDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALAPG-EDG--YLYCGPSGSGHFVK 172
Query: 189 MVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGE-LESFLVEITADIFKVK 247
MVHNGIEYG MQ I+E +++LK+ + +L + + WN G + S+L+++TA+ FK
Sbjct: 173 MVHNGIEYGMMQAIAEGFELLKN--SPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFK-- 228
Query: 248 DEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAK 307
+ +L D+I + G G+WTV++A +L V AP IA +L R+ S +++ A K
Sbjct: 229 ---KDPDL-DQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRS--RQDDTFAGK 282
Query: 308 VLKEAGLKDEVQNVGVHVDKK 328
VL A L++E G H KK
Sbjct: 283 VL--AALRNE---FGGHAVKK 298
|
Length = 300 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 2e-57
Identities = 102/303 (33%), Positives = 161/303 (53%), Gaps = 21/303 (6%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++GL GL MG N+A + E G + Y+ VD G+L +T ++ + V
Sbjct: 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVA-------GKLGITARHSLEELV 54
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
++ PR++ ++V AG + I L +SPGD ++DGGN Y + RR E +++G+
Sbjct: 55 SKLEAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH 114
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187
Y+ G SGG G R+G LM GG E Y+ + + + +A +GP + G GSG+F+
Sbjct: 115 YVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALAP---EGPGYVHAGPVGSGHFL 171
Query: 188 KMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGE-LESFLVEITADIFKV 246
KMVHNGIEYG MQ +E ++L + ++ ++ W G + S+L+++T
Sbjct: 172 KMVHNGIEYGMMQAYAEGLELLDKSD--FDFDVEDVARLWRNGSVIRSWLLDLTVKALA- 228
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
E + I G G+WTV++A EL+VAAP IAASL R+ S +E+
Sbjct: 229 -----EDPKLAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFAS--QEDDSFHM 281
Query: 307 KVL 309
KV+
Sbjct: 282 KVV 284
|
Length = 299 |
| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Score = 186 bits (476), Expect = 4e-57
Identities = 68/178 (38%), Positives = 94/178 (52%), Gaps = 19/178 (10%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
++IG GL VMG +ALN+ + G+ ++VYNRT KV+E + G +P +F
Sbjct: 1 AKIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEG-------AVGAASPAEF 53
Query: 67 VLSIQRPRSVIILVKAGSPVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ 123
V S VI +V AG+ VD I L + PGD IIDG +T RR E ++
Sbjct: 54 VASA---DVVITMVPAGAAVDAVILGEDGLLPGLKPGDIIIDGSTSDPDDTRRRAKELAE 110
Query: 124 KGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
KG+ +L VSGGEEGA G S+M GG EA+ ++ IL+ + A YIG
Sbjct: 111 KGIHFLDAPVSGGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGAC-----VTHYIGP 163
|
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 3e-49
Identities = 108/324 (33%), Positives = 162/324 (50%), Gaps = 29/324 (8%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDE-TLDRAHREGQLPLTGHYTPRDF 66
++GL GL MG N+ +A++G Y+ V DR TG R+
Sbjct: 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRT--------TGVANLREL 53
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
+ PR V ++V G VD + L+ + GD +IDGGN +Y ++ RR +KG+
Sbjct: 54 SQRLSAPRVVWVMVPHGI-VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGI 112
Query: 127 LYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 186
L G SGG G G M GG EA+ + VA + + G Y G GSG+F
Sbjct: 113 HLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVAPE-EQG--YLYCGPCGSGHF 169
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGE-LESFLVEITADIFK 245
VKMVHNGIEYG M I+E +++L++ + ++ E+ W +G + S+L+++TA F+
Sbjct: 170 VKMVHNGIEYGMMAAIAEGFEILRN--SQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFR 227
Query: 246 VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKA 305
E + + + G G+WTV A +L V AP IA SL R+ S ++ + A
Sbjct: 228 ---ESPDLAEFSGRVSDS---GEGRWTVIAAIDLGVPAPVIATSLQSRFAS--RDLDDFA 279
Query: 306 AKVLKEAGLKDEVQNVGVHVDKKR 329
KVL A L+ E G H +KK+
Sbjct: 280 NKVL--AALRKE---FGGHAEKKK 298
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 2e-19
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+I GL +MG +A N+ + G ++VYNRT K E L T +P +
Sbjct: 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLA------AAGATVAASPAEA 54
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT-----ERRI 118
VI ++ + V + L E + PG +ID ++T R +
Sbjct: 55 A---AEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVID------MSTISPETAREL 105
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHG-PSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
+ KGL +L VSGG GA G ++M GG EA+ + +L+ + +
Sbjct: 106 AAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKN------IV 159
Query: 177 YIGEGGSGNFVKMVHNGIEYGDMQLISEAY 206
++G G+G K+ +N + G++ ++EA
Sbjct: 160 HVGPVGAGQAAKLANNILLAGNIAALAEAL 189
|
Length = 286 |
| >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 4e-11
Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 24/204 (11%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL +MG+ ++ N+ + G+ + VY+R V E + T +
Sbjct: 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-------AAGAETASTAKA-- 54
Query: 68 LSIQRPRSVIILVKAGSPVDQTIA----ALSEHMSPGDCIIDGGNEWYLNTERRIHEA-S 122
+ VII + SP + +A + E PG +ID + L R I A
Sbjct: 55 --VAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPL-ASREIAAALK 111
Query: 123 QKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181
KG+ L VSGGE A G S+M GG ++ D+++ +A V + G+
Sbjct: 112 AKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV------VHTGDI 165
Query: 182 GSGNFVKMVHNGIEYGDMQLISEA 205
G+GN K+ + I ++ +SEA
Sbjct: 166 GAGNVTKLANQVIVALNIAAMSEA 189
|
Length = 296 |
| >gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 2e-10
Identities = 53/242 (21%), Positives = 99/242 (40%), Gaps = 26/242 (10%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL +MG +++N+A+ G+ + V DE L + T R
Sbjct: 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAE-------TAR--- 50
Query: 68 LSIQRPRSVIILVKAGSPVDQTIA----ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ 123
+ VI + SP + +A + E PG ++D + + ++R +
Sbjct: 51 -QVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKE 109
Query: 124 KGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGG 182
KG+ YL VSGGE GA G S+M GG ++ ++ + + + G + +G G
Sbjct: 110 KGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEAL------GKNIVLVGGNG 163
Query: 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242
G K+ + I +++ +SEA G + + G S ++E+ +
Sbjct: 164 DGQTCKVANQIIVALNIEAVSEALVFASKAG----VDPVRVRQALRGGLAGSTVLEVKGE 219
Query: 243 IF 244
Sbjct: 220 RV 221
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291 |
| >gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 25/204 (12%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL +MG +A+N+A G + V + + D G + + T R
Sbjct: 2 KLGFIGLGIMGTPMAINLARAGHQLHV-----TTIGPVADELLSLGAVSVE---TARQVT 53
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEH-----MSPGDCIIDGGNEWYLNTERRIHEAS 122
+ + I+V V++ + E+ G I+D + + T+R + +
Sbjct: 54 ---EASDIIFIMVPDTPQVEEVL--FGENGCTKASLKGKTIVDMSSISPIETKRFARQVN 108
Query: 123 QKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181
+ G YL VSGGE GAR G S+M GG + ++ + + + G +T +G
Sbjct: 109 ELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELL------GKNITLVGGN 162
Query: 182 GSGNFVKMVHNGIEYGDMQLISEA 205
G G K+ + I +++ +SEA
Sbjct: 163 GDGQTCKVANQIIVALNIEAVSEA 186
|
Length = 292 |
| >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 8e-05
Identities = 55/222 (24%), Positives = 89/222 (40%), Gaps = 35/222 (15%)
Query: 13 GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQR 72
GL MG +A N+ + G P+ V++ V+E + +P + R
Sbjct: 3 GLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAG-------AQAAASPAEAAEGADR 55
Query: 73 PRSVIILVKAGSPVDQTIAALSEHMSPG--------DC-IIDGGNEWYLNTERRIHE-AS 122
VI ++ AG V + E + P DC ID ++ R++ E A+
Sbjct: 56 ---VITMLPAGQHVISVYSG-DEGILPKVAKGSLLIDCSTID------PDSARKLAELAA 105
Query: 123 QKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181
G +++ VSGG GAR G + M GG E + +L + + + G+
Sbjct: 106 AHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRN------IVHCGDH 159
Query: 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
G+G K+ +N + M +EA L GL L EI
Sbjct: 160 GAGQAAKICNNMLLGISMIGTAEAM-ALGEKLGLDPKVLFEI 200
|
3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 345 SYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404
+ A+G LL+ ++ + +A +W G +IR+ LD +A++++P+L +
Sbjct: 185 AIAEGFELLK----NSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQI---- 236
Query: 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSY-FDTYRRARLPANLVQAQRDLFGA 463
V R V A+ G+ P + +L F + + ++ A R+ FG
Sbjct: 237 ---SGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGG 293
Query: 464 HTYERID 470
H ++ +
Sbjct: 294 HAVKKKN 300
|
Length = 300 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 345 SYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404
+YA+G+ LL ++ + ++AR+W+ G +IR+ LD KA +P LA +
Sbjct: 185 AYAEGLELLDKSD----FDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLAGI---- 236
Query: 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPA-NLVQAQRDLFGA 463
+ V R V AI ++ P + ASL + +V A R+ FG
Sbjct: 237 ---KGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGG 293
Query: 464 HTYER 468
H +
Sbjct: 294 HAVKT 298
|
Length = 299 |
| >gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 49/215 (22%), Positives = 85/215 (39%), Gaps = 21/215 (9%)
Query: 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRD 65
++ I GL MG +A N+ ++G + V++ VD +D+ +P
Sbjct: 1 MAAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAA-------SPAQ 53
Query: 66 FVLSIQRPRSVIILVKAGSPVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS 122
+ VI ++ G V + + E +S +ID L T++ I +
Sbjct: 54 ---AAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQ 110
Query: 123 QKGLLYLGMGVSGGEEGARHGPSL-MPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181
KG + + V + A G L + GG+ E IL + ++ + G
Sbjct: 111 AKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA------GGP 164
Query: 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLS 216
G G VK+++N + L +EA VL GLS
Sbjct: 165 GMGIRVKLINNYMSIALNALSAEAA-VLCEALGLS 198
|
Length = 296 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 28/135 (20%)
Query: 345 SYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASL---V 401
+YA+G LL ++L+ +A +W+ G +IR+ LD A +P L + V
Sbjct: 186 AYAEGFELLE----ASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLDEISGYV 241
Query: 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRAR-----LPAN-LVQ 455
D R V+ AI + P + A+L + R R A+ +V
Sbjct: 242 EDSGEGRWTVE----------EAIDLAVPAPVIAAAL-----FMRFRSRQEDSFADKVVA 286
Query: 456 AQRDLFGAHTYERID 470
A R+ FG H ++ +
Sbjct: 287 ALRNGFGGHAVKKKE 301
|
Length = 301 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 345 SYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404
+ A+G +LR+ ++ + E+AR+W+ G +IR+ LD A++ +P+LA
Sbjct: 184 AIAEGFEILRNSQ----FDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEF---- 235
Query: 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASL-SYFDTYRRARLPANLVQAQRDLFGA 463
V R V AI G+ P + SL S F + ++ A R FG
Sbjct: 236 ---SGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGG 292
Query: 464 HTYER 468
H ++
Sbjct: 293 HAEKK 297
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 503 | |||
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 100.0 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 100.0 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 100.0 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 100.0 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 100.0 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 100.0 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 100.0 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 100.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 100.0 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 100.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 100.0 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 100.0 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 100.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.97 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.96 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.92 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.92 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.91 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.91 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 99.91 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.9 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.9 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.88 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.88 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.86 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.84 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.83 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.82 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.81 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.8 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.79 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.78 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.78 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.78 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.78 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.77 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.77 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.76 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.76 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.75 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.75 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.73 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.73 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.72 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.71 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.71 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.7 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.69 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.68 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.67 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.67 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.67 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.67 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.66 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.65 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.65 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.64 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.63 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.62 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.62 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.62 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.62 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.6 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.59 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.58 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.58 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.58 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.55 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.52 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.51 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.48 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.46 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.45 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.43 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.43 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.42 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.42 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.42 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.41 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.41 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.4 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.4 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.39 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.39 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 99.39 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.38 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.38 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.38 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.37 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.34 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.34 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.32 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.31 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.31 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.3 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.29 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.26 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.23 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.12 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.1 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.09 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.08 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.07 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.03 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 99.02 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.02 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.99 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.98 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.97 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.96 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.96 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.95 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.91 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.87 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.8 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.79 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.77 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.76 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.76 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.75 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.72 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.71 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.7 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.68 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.67 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.65 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.65 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.65 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.65 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.62 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 98.62 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.61 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.5 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.5 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.47 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.46 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 98.43 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.41 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.37 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.36 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.35 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 98.33 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.32 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.27 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.23 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.19 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.16 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 98.09 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.07 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 98.07 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 98.06 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.03 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.02 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.99 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.95 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.91 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.89 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.89 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.89 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.88 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.87 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.87 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.87 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.86 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.85 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.85 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.85 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.83 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.83 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.8 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 97.8 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.78 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.78 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 97.77 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.77 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.77 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.76 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.75 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.74 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.72 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.71 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.71 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.7 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.67 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.66 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.66 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.65 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.65 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.64 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.64 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.62 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.61 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.61 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.59 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.59 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 97.58 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.57 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 97.57 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.55 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.54 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.53 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 97.53 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.52 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.52 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.52 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 97.51 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 97.5 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 97.48 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.45 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.44 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.44 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.42 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.41 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 97.4 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.39 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 97.38 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 97.37 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.35 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.32 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 97.28 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 97.28 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.26 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 97.23 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.23 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.23 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.2 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.2 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.17 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 97.17 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.15 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.12 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.12 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.09 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.08 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 97.07 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.05 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.03 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 97.02 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.0 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.0 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.0 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.95 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 96.95 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 96.95 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 96.93 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.91 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 96.91 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.89 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.88 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.78 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.78 | |
| PLN02602 | 350 | lactate dehydrogenase | 96.77 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.73 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 96.72 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.71 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 96.68 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.67 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.66 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.66 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 96.65 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.63 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 96.63 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.6 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.6 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.59 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.58 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.56 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 96.55 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.54 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 96.54 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 96.53 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.5 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.47 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.47 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 96.46 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.46 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.45 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.45 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.45 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.43 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.41 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.41 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 96.37 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 96.35 | |
| PLN00106 | 323 | malate dehydrogenase | 96.32 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 96.29 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.26 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.25 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.22 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 96.21 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 96.18 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.16 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 96.16 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.15 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 96.15 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.15 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.13 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.12 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 96.1 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.09 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.08 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 96.06 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.06 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.06 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 96.04 | |
| PLN02477 | 410 | glutamate dehydrogenase | 95.98 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 95.97 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 95.97 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 95.96 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.94 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 95.93 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.93 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 95.92 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 95.91 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 95.91 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.91 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.86 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 95.85 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.81 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.76 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 95.74 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 95.74 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 95.74 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.73 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.71 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.69 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 95.63 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 95.62 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 95.6 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.59 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 95.55 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 95.55 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.52 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.52 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.52 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.51 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 95.49 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 95.48 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.46 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 95.4 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 95.4 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.4 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 95.33 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.32 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 95.32 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 95.31 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.26 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 95.25 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.25 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 95.25 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 95.24 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.22 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 95.21 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 95.2 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.19 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 95.19 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 95.13 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.13 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.13 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.12 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 95.12 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 95.11 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.1 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 95.1 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 95.1 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.1 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 95.09 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 95.07 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 95.04 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.02 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.01 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 95.0 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 94.99 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.98 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.98 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 94.95 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 94.94 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.94 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 94.93 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 94.93 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 94.93 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.93 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.92 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 94.91 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.89 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 94.88 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 94.87 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 94.86 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 94.86 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 94.86 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 94.86 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 94.84 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 94.8 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 94.8 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 94.76 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 94.76 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 94.74 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 94.72 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 94.71 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 94.71 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 94.7 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 94.7 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.69 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 94.69 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 94.69 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 94.68 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.67 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.67 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.66 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 94.65 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 94.64 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 94.62 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 94.61 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 94.61 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 94.58 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 94.55 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.55 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 94.53 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 94.52 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 94.52 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 94.47 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 94.45 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 94.43 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.42 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 94.41 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 94.41 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 94.39 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 94.38 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 94.38 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.36 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 94.36 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.35 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.34 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 94.34 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 94.33 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 94.31 | |
| PRK08643 | 256 | acetoin reductase; Validated | 94.28 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 94.27 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.26 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 94.24 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.24 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 94.21 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 94.19 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 94.19 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 94.18 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 94.12 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 94.12 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 94.11 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 94.09 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 94.05 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 94.04 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.03 | |
| PRK05868 | 372 | hypothetical protein; Validated | 94.02 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 93.94 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 93.92 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 93.91 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 93.9 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 93.89 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 93.89 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.89 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 93.87 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 93.85 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 93.84 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 93.83 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.83 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 93.82 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 93.77 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 93.76 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.76 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 93.7 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 93.7 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.68 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 93.66 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 93.64 | |
| PF00289 | 110 | CPSase_L_chain: Carbamoyl-phosphate synthase L cha | 93.62 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 93.6 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 93.57 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 93.55 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 93.54 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 93.5 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 93.5 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 93.46 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 93.46 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 93.43 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 93.4 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 93.39 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.38 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 93.37 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 93.36 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.34 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 93.33 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 93.28 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 93.26 |
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-132 Score=976.28 Aligned_cols=469 Identities=58% Similarity=0.955 Sum_probs=452.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.+.||+||+|+||++||+|++++||+|.+|||++++++++.++..... ++.++.|++|+++.|++|+.|+++|..+.+
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k--~i~~~~sieefV~~Le~PRkI~lMVkAG~~ 80 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGK--NIVPAYSIEEFVASLEKPRKILLMVKAGTP 80 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCC--CccccCcHHHHHHHhcCCceEEEEEecCCc
Confidence 468999999999999999999999999999999999999998755321 688999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~i 165 (503)
|+.++++|+|+|.+||||||.+|+.+.+|.|+.+.|.++|++|++++||||++||++||+||+||++++|+.++|+|++|
T Consensus 81 VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~~I 160 (473)
T COG0362 81 VDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKI 160 (473)
T ss_pred HHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhcc
Q 010702 166 AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFK 245 (503)
Q Consensus 166 g~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~ 245 (503)
++|.++++||.|+|+.|+|||||||||+|||+.||+|+|+|.+++...|++.+++.++|.+||++.++|||++|+.++|+
T Consensus 161 aAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL~ 240 (473)
T COG0362 161 AAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADILR 240 (473)
T ss_pred HhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999997779999999999999999999999999999999
Q ss_pred ccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCccccccccccc
Q 010702 246 VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHV 325 (503)
Q Consensus 246 ~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 325 (503)
.+|+.++.+++|.|+|.++|||||||+++.|.++|+|+|+|.+||++|++|+.|++|+++++.|++|... .++
T Consensus 241 ~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~Ask~l~~~~~~-------~~~ 313 (473)
T COG0362 241 KKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASKVLAGPKLG-------EPG 313 (473)
T ss_pred hcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCC-------CCC
Confidence 9887666699999999999999999999999999999999999999999999999999999999888642 367
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhh
Q 010702 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (503)
Q Consensus 326 ~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~ 405 (503)
++..|+++|++|+|+++|++|||||.+|+++|++|+|++++.+|++|||+||||||.||+.|+++|.++|++.|||++++
T Consensus 314 dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~py 393 (473)
T COG0362 314 DKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLAPY 393 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcCHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCCcccccccCCC
Q 010702 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKLP 483 (503)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~~~h~~w~~~~ 483 (503)
|...+++.+++||++|..|++.|||+|++|+||+|||+||++++|+|||||||||||||||+|+|++|.||++|++.+
T Consensus 394 F~~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~Dsyr~~~lpaNLiQAQRDyFGAHtyeR~D~~~~fHt~W~~~~ 471 (473)
T COG0362 394 FKSILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWTGGG 471 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhhccccHHHHHHHHHhhcccceeecCCCCccccCccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998643
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-124 Score=902.01 Aligned_cols=479 Identities=61% Similarity=0.998 Sum_probs=453.8
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|+....++||+|||++||.+|++|++++||.|++|||+..+++++.+..... +.+.++.|+++++..|++|++|++.|
T Consensus 1 m~q~~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~--~~i~ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 1 MSQTPKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKG--TKIIGAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred CCCccccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcC--CcccCCCCHHHHHHhcCCCcEEEEEe
Confidence 4444457899999999999999999999999999999999999998765431 35788999999999999999999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHH
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRD 160 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ 160 (503)
+.+.+|+..+++|.|+|.+||+|||.+|+.+.+|.++.+.+.++|+-|++++||||+++||.||++|+||++++|+.+++
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg~~~Awp~ik~ 158 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKD 158 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccc-CCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhh
Q 010702 161 ILQKVAAQV-DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239 (503)
Q Consensus 161 ll~~ig~~~-~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~ 239 (503)
+|+.+++++ ++++||.|+|+.|+|||||||||+|+|+.||+|+|+|.++++.+|++.+++.++|.+||.+.+.|||++|
T Consensus 159 ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieI 238 (487)
T KOG2653|consen 159 IFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEI 238 (487)
T ss_pred HHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHH
Confidence 999999997 7799999999999999999999999999999999999999997779999999999999999999999999
Q ss_pred hhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCccccc
Q 010702 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQ 319 (503)
Q Consensus 240 ~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~ 319 (503)
+.+|++-+|+. +.++++.|+|.++|||||+|+++.|.++|+|+|+|.+||++||+|++|++|+.+++.+++|..+.
T Consensus 239 T~dIlk~~d~~-G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ask~L~gp~~~~--- 314 (487)
T KOG2653|consen 239 TADILKFKDED-GKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKDERVRASKVLKGPGVKR--- 314 (487)
T ss_pred hHHHhheeccC-CChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch---
Confidence 99999987654 44899999999999999999999999999999999999999999999999999999999986532
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCC
Q 010702 320 NVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLAS 399 (503)
Q Consensus 320 ~~~~~~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ 399 (503)
....+...|++++++|+|+++|++|+|||+||++++++++|++|+.+|+.+||+||||||.||+.|.++|+++|+|.|
T Consensus 315 --~~~~~k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~p~l~n 392 (487)
T KOG2653|consen 315 --DMGDDKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRNPDLAN 392 (487)
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcCccHhh
Confidence 233357889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCC-ccccc
Q 010702 400 LVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPG-SFHTE 478 (503)
Q Consensus 400 ll~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~-~~h~~ 478 (503)
+|+|+.|.+++.+.+.+||++|..|+++|||+|++|+||.|||+||++++|+||+||||||||||||++++++| .+|++
T Consensus 393 ll~d~fF~~~v~~~q~~wr~vV~~a~~~gIptP~~st~Lafydgyr~e~lpaNllQAqRDYFGAHtye~l~~~~~~~Htn 472 (487)
T KOG2653|consen 393 LLLDPFFAKAVEEAQDSWRRVVALAVEAGIPTPAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTYELLGEPGKAIHTN 472 (487)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhhhhcCcHHHHHHHHHhhccceeeecCCCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 79999
Q ss_pred ccCCCCCcc
Q 010702 479 WTKLPARLV 487 (503)
Q Consensus 479 w~~~~~~~~ 487 (503)
|++.+.+.+
T Consensus 473 Wtg~gg~~s 481 (487)
T KOG2653|consen 473 WTGHGGNVS 481 (487)
T ss_pred ecccCCccc
Confidence 998655543
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-114 Score=909.52 Aligned_cols=469 Identities=60% Similarity=1.017 Sum_probs=439.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|++|||||+|.||.+||++|+++||+|++|||++++++++.+.+...| ..+..+.+++++++.++++|+||+|||++.+
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g-~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGN-TRVKGYHTLEELVNSLKKPRKVILLIKAGEA 79 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcC-CcceecCCHHHHHhcCCCCCEEEEEeCChHH
Confidence 358999999999999999999999999999999999999987532211 1255788999999987779999999999999
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~i 165 (503)
++++++++.+.+.+|++|||+||+.+.++.++.+.+.++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.+
T Consensus 80 v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~~i 159 (470)
T PTZ00142 80 VDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKC 159 (470)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhc
Q 010702 166 AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK-HVGGLSNAELAEIFDEWNKGELESFLVEITADIF 244 (503)
Q Consensus 166 g~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~-~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l 244 (503)
+++.++++|++|+|+.|+||++||+||+++|++|++++|++.|++ +.| ++++++.++|..|+.|.+.||+++++.+++
T Consensus 160 a~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~g-l~~~~l~~v~~~w~~g~~~S~l~ei~~~~~ 238 (470)
T PTZ00142 160 SAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILG-MSNEELSEVFNKWNEGILNSYLIEITAKIL 238 (470)
T ss_pred hhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 988777789999999999999999999999999999999999998 577 999999999999999999999999999999
Q ss_pred cccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccc
Q 010702 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVH 324 (503)
Q Consensus 245 ~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 324 (503)
.++|+.++++.+|.|.|.++|||||+|++++|.++|||+|+|.+||++|++|.+|++|..+++.|.+|..... ...
T Consensus 239 ~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~~~~~~~gp~~~~~----~~~ 314 (470)
T PTZ00142 239 AKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKASSHLAGPNPANK----TET 314 (470)
T ss_pred hcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHHhccccCCCccccc----ccc
Confidence 9876533258999999999999999999999999999999999999999999999999999999987641100 112
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchh
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~ 404 (503)
.+++||+||||||||||+|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|++.|||+++
T Consensus 315 ~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~ 394 (470)
T PTZ00142 315 EDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDP 394 (470)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCCccccccc
Q 010702 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480 (503)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~~~h~~w~ 480 (503)
.|...+++..++|||+|..|++.|+|+|+||+||+||++++++++|+|+|||||||||+|||+|+|++|.||++|+
T Consensus 395 ~~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~ 470 (470)
T PTZ00142 395 DFNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470 (470)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHHHhCCCCcccCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999994
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-113 Score=902.19 Aligned_cols=481 Identities=86% Similarity=1.312 Sum_probs=446.1
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|++..+++|||||+|.||.+||+||+++||+|++|||++++++++.+.+...|...+..+.|++|+++.|+.||+||+||
T Consensus 1 ~~~~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v 80 (493)
T PLN02350 1 MASAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILV 80 (493)
T ss_pred CCCCCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEEC
Confidence 67777789999999999999999999999999999999999999887421111002346889999999888899999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHH
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRD 160 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ 160 (503)
|++.++++|++++++.+.+|++|||+||+.|.+++++.+.++++|++|+++|||||+++|+.|+++|+||+++++++++|
T Consensus 81 ~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~p 160 (493)
T PLN02350 81 KAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIED 160 (493)
T ss_pred CCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHhccCCcchhHHhh
Q 010702 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV-GGLSNAELAEIFDEWNKGELESFLVEI 239 (503)
Q Consensus 161 ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~-g~~~~~~i~~~~~~~~~g~~~s~l~~~ 239 (503)
+|+.++++.++++|++|+|+.|+||++||+||++++++|++++|++.++++. | ++++++.++|..|+.+.+.||++++
T Consensus 161 vL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~G-ld~~~l~~vf~~~~~g~~~S~llei 239 (493)
T PLN02350 161 ILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGG-LSNEELAEVFAEWNKGELESFLIEI 239 (493)
T ss_pred HHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHcCCCccchHHHH
Confidence 9999998877778999999999999999999999999999999999999995 7 9999999999999999999999999
Q ss_pred hhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCccccc
Q 010702 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQ 319 (503)
Q Consensus 240 ~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~ 319 (503)
+.+++..+++|+++|.++.+.||++|||||+|++++|.++|+|+|+|.++|++|+.|+.|++|..+++.+++|..+.. .
T Consensus 240 ~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~~~~~~~~~~~~~-~ 318 (493)
T PLN02350 240 TADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAAAKVFKEAGLEDI-L 318 (493)
T ss_pred HHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHHHhhcCCCCcccc-c
Confidence 999987766688889999999999999999999999999999999999999999999999999999999986621100 0
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCC
Q 010702 320 NVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLAS 399 (503)
Q Consensus 320 ~~~~~~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ 399 (503)
......+...|+++|++|+|+++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|++.|
T Consensus 319 ~~~~~~~~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~ 398 (493)
T PLN02350 319 SADSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLAS 398 (493)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhh
Confidence 00012356789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCCcccccc
Q 010702 400 LVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479 (503)
Q Consensus 400 ll~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~~~h~~w 479 (503)
||+++.|.+.+.+..++|||+|..|++.|+|+|+||+||+||++++++++|+|+|||||||||+|+|+|+|++|.||++|
T Consensus 399 l~~~~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~~~~~~nliqaqRd~FGaH~~~r~d~~g~~h~~w 478 (493)
T PLN02350 399 LLVDPEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEW 478 (493)
T ss_pred hcCCHHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCccHHHHHHHHHHhCCCceeeCCCCCCCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 010702 480 TKLP 483 (503)
Q Consensus 480 ~~~~ 483 (503)
++.+
T Consensus 479 ~~~~ 482 (493)
T PLN02350 479 TKLA 482 (493)
T ss_pred hhhc
Confidence 8643
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-112 Score=890.88 Aligned_cols=454 Identities=58% Similarity=0.970 Sum_probs=431.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-hcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHHHHHHHHHh
Q 010702 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSE 95 (503)
Q Consensus 17 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~ 95 (503)
||.+||+||+++||+|++|||++++++++.+. +... +++.+.|++++++.++.||+||+|||++.++++|++++++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~---g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGK---KIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCC---CeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHh
Confidence 89999999999999999999999999999874 3211 3678999999999888899999999999999999999999
Q ss_pred cCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHHhccc-CCCCc
Q 010702 96 HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPC 174 (503)
Q Consensus 96 ~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~ig~~~-~~~~~ 174 (503)
.+.+|++|||+||+.|.+++++.+.++++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.+++++ ++++|
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g~~c 157 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPC 157 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987 78899
Q ss_pred EEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCc
Q 010702 175 VTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH-VGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEG 253 (503)
Q Consensus 175 v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~-~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~ 253 (503)
+.|+|+.|+||++|||||+|+|++|++++|++.|+++ .| ++++++.++|+.||.+.+.||+++++.+++..+|..++.
T Consensus 158 ~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~G-l~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 158 VTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLG-LSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999995 77 999999999999999999999999999999875522555
Q ss_pred hhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccchhhHHHH
Q 010702 254 ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDD 333 (503)
Q Consensus 254 ~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~ 333 (503)
+.+|.|+|.++|||||+|++++|.++|||+|+|..||++|+.|..+++|..+++.|.+|.. ....+.+||+||
T Consensus 237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~~~~~~~g~~~-------~~~~~~~~~i~~ 309 (459)
T PRK09287 237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPAA-------KFEGDKAEFIED 309 (459)
T ss_pred cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHHhhcccCCCCC-------cccccHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999987642 112356899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhhHhHHHHhh
Q 010702 334 VRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQR 413 (503)
Q Consensus 334 v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~~~~~~~~~ 413 (503)
||||||||+|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|++.|||+++.|...+++.
T Consensus 310 v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~ 389 (459)
T PRK09287 310 VRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEY 389 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCCcccccccC
Q 010702 414 QAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481 (503)
Q Consensus 414 ~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~~~h~~w~~ 481 (503)
.++|||+|..|++.|+|+|+||+||+||++++++++|+|||||||||||+|||+|+|++|.||++|++
T Consensus 390 ~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~~ 457 (459)
T PRK09287 390 QDALRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEWSE 457 (459)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHhHhCCCCcccCCCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999975
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-111 Score=887.99 Aligned_cols=463 Identities=59% Similarity=0.977 Sum_probs=435.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHH
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 87 (503)
+|||||+|.||.+||++|+++||+|++|||++++++++.+.+... .++..+.+++++++.++.||+||+|||++.+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g--~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKG--KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCC--CCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 599999999999999999999999999999999999988752110 025677899999988888999999999999999
Q ss_pred HHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHHhc
Q 010702 88 QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAA 167 (503)
Q Consensus 88 ~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~ig~ 167 (503)
++++++.+.+.+|++|||+||+.+.++.++.+.+.++|++|+++|||||+++|+.|+++|+||+++++++++|+|+.+++
T Consensus 79 ~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia~ 158 (467)
T TIGR00873 79 AVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAA 158 (467)
T ss_pred HHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccc
Q 010702 168 QVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK-HVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (503)
Q Consensus 168 ~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~-~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~ 246 (503)
++++++|++|+|+.|+||++|||||+++|++|++++|++.|++ +.| ++++++.++|+.|+.+.++||+++++.+++.+
T Consensus 159 ~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g-~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~~ 237 (467)
T TIGR00873 159 KVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLG-LSNEEIAEVFTEWNNGELDSYLIEITADILKK 237 (467)
T ss_pred hcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCcccchHHHhHHHHHhc
Confidence 8777789999999999999999999999999999999999996 577 99999999999999999999999999999988
Q ss_pred cccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccc
Q 010702 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (503)
Q Consensus 247 ~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (503)
+|+ .+.+++|.|.|.++|||||+|++++|.++|||+|+|.+|+++|+.|..|++|..+++.|.+|... ....+
T Consensus 238 ~d~-~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~~~~~~~gp~~~------~~~~~ 310 (467)
T TIGR00873 238 KDE-DGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKVLSGPLAP------EPAVD 310 (467)
T ss_pred cCC-CCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHHhhcccCCCCcc------ccccc
Confidence 664 34589999999999999999999999999999999999999999999999999999999776321 12235
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhhH
Q 010702 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (503)
Q Consensus 327 ~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (503)
.+||+||||||||||+|++|+|||+||+++|++|+|++|+.+|++|||+||||||+||+.|.++|+++|++.|||+|+.|
T Consensus 311 ~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~ 390 (467)
T TIGR00873 311 KEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYF 390 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCC--ccccccc
Q 010702 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPG--SFHTEWT 480 (503)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~--~~h~~w~ 480 (503)
...+++..++|||+|..|++.|+|+|+||+||+||++|+++++|+|||||||||||+|||+|+|++| .||++|+
T Consensus 391 ~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~~~nliqaqRd~FGaH~~~r~d~~g~~~~h~~w~ 466 (467)
T TIGR00873 391 KDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWT 466 (467)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHHHhccccccccCCCCCCccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 9999996
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-86 Score=644.39 Aligned_cols=291 Identities=62% Similarity=1.029 Sum_probs=248.7
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhc
Q 010702 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKT 263 (503)
Q Consensus 184 g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~ 263 (503)
|||||||||+|||++||+++|+|.++++..|++++++.++|+.||+|.++|||++++.++++++| .++++++|.|+|.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d-~~g~~lld~I~d~a 79 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKD-ETGGPLLDKILDKA 79 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B--TTSSBGGGGB-S--
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhcc-CccCcchhhhCCcc
Confidence 89999999999999999999999999976559999999999999999999999999999999866 56779999999999
Q ss_pred CCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccchhhHHHHHHHHHHHHHH
Q 010702 264 GMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKI 343 (503)
Q Consensus 264 ~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~v~~ai~~~~~ 343 (503)
+|||||+|++++|.++|||+|+|.+||++|++|+.+++|..+++.+++|.... ....+...|+++|++|+++|+|
T Consensus 80 ~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~~s~~~~~~~~~~-----~~~~~~~~~i~~l~~Aly~~~i 154 (291)
T PF00393_consen 80 GQKGTGKWTVQEALELGVPAPTIAAAVFARFLSAQKEERVAASKILPGPQKFD-----ESKEDKEEFIEDLRKALYAAKI 154 (291)
T ss_dssp --BSHHHHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHHHHHHSTT-S-ST-----TS-SSHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHHHHhhcccccccc-----cccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998864110 2345778899999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhhHhHHHHhhhhHHHHHHHH
Q 010702 344 CSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423 (503)
Q Consensus 344 ~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~r~~v~~ 423 (503)
++|+|||+||+++|++|+|++|+.+|++|||+||||||.||+.|.++|+++|++.|||+++.|.+.+++..++|||+|..
T Consensus 155 ~~yaQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~af~~~p~l~nLll~~~f~~~l~~~~~~lR~vV~~ 234 (291)
T PF00393_consen 155 ISYAQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAEAFKENPDLENLLLDPYFAEELKDNQPSLRRVVSL 234 (291)
T ss_dssp HHHHHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHHHHHH-TT-STGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHHHHHhCCChhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCCccccccc
Q 010702 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWT 480 (503)
Q Consensus 424 a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~~~h~~w~ 480 (503)
|++.|+|+|++++||+||++++++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 235 ai~~gipvPalsaaL~Y~ds~~~~~lpanlIQAqRDyFGaHtyeR~D~~g~fH~~W~ 291 (291)
T PF00393_consen 235 AIEAGIPVPALSAALSYFDSYRSERLPANLIQAQRDYFGAHTYERIDKEGSFHTEWS 291 (291)
T ss_dssp HHHHT---HHHHHHHHHHHHHTTSSHTHHHHHHHHHHHH---EEBSSSSSEE---TT
T ss_pred HHHcCCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCcceeecCCCCCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999995
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=441.78 Aligned_cols=298 Identities=28% Similarity=0.509 Sum_probs=269.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|+||+||||.||.+|+++|.+.||+|.+||+|++.++++.+.+ ++.++|++++++.|..+++|+++||.+..+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~g-------a~~a~sl~el~~~L~~pr~vWlMvPag~it 73 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEG-------ATGAASLDELVAKLSAPRIVWLMVPAGDIT 73 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcC-------CccccCHHHHHHhcCCCcEEEEEccCCCch
Confidence 5899999999999999999999999999999999999998875 467889999999999999999999999899
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHHh
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~ig 166 (503)
+.+++.+.+.|++|++|||.+|+.+.++.++.+.++++|+||+|++.|||..+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA 153 (300)
T COG1023 74 DAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALA 153 (300)
T ss_pred HHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccc
Q 010702 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (503)
Q Consensus 167 ~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~ 246 (503)
+. .
T Consensus 154 ------~g-----------------------------------------------------------------------e 156 (300)
T COG1023 154 ------PG-----------------------------------------------------------------------E 156 (300)
T ss_pred ------cC-----------------------------------------------------------------------c
Confidence 22 0
Q ss_pred cccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccc
Q 010702 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (503)
Q Consensus 247 ~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (503)
+.| .+-+| .+
T Consensus 157 -~Gy---------------------------------------------------------l~~Gp------------~G 166 (300)
T COG1023 157 -DGY---------------------------------------------------------LYCGP------------SG 166 (300)
T ss_pred -Ccc---------------------------------------------------------ccccC------------CC
Confidence 000 01122 27
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhhH
Q 010702 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (503)
Q Consensus 327 ~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (503)
+|||+|||||||||++|++|+|||+||+++ .+++|+++|+++||.|+.||||||+.+.++|+++++++.+- ..+
T Consensus 167 sGHfvKMVHNGIEYGmM~a~aEGfelL~~s----~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~~--g~v 240 (300)
T COG1023 167 SGHFVKMVHNGIEYGMMQAIAEGFELLKNS----PFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQIS--GRV 240 (300)
T ss_pred cchhHHHHhccHHHHHHHHHHHHHHHHHhC----CCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHhc--Cee
Confidence 899999999999999999999999999965 48899999999999999999999999999999988764422 223
Q ss_pred hHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH-HHHhhccCCcchhHHHhhhhhcCCcccccc
Q 010702 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLS-YFDTYRRARLPANLVQAQRDLFGAHTYERI 469 (503)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~-y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~ 469 (503)
.+ ++++ ||+|++|++.|+|+|+|+.||+ .|.|........+++.|+|+.||+|..++.
T Consensus 241 ~d---SGEG--rWTv~~aldlgvpaPVia~al~~Rf~S~~~d~f~~kvlaalR~~FGgH~vk~k 299 (300)
T COG1023 241 SD---SGEG--RWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGGHAVKKK 299 (300)
T ss_pred cc---CCCc--eeehHHHHhcCCCchHHHHHHHHHHhccchhhHHHHHHHHHHHHhCCcccccC
Confidence 33 7888 9999999999999999999999 688888888889999999999999998775
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-54 Score=434.42 Aligned_cols=295 Identities=28% Similarity=0.488 Sum_probs=257.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|+|||||+|.||.+||++|+++||+|.+|||++++++++.+.+ .....+++++++.+..+|+||+|||++ .+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~ 72 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR-------TTGVANLRELSQRLSAPRVVWVMVPHG-IV 72 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-------CcccCCHHHHHhhcCCCCEEEEEcCch-HH
Confidence 4899999999999999999999999999999999999888754 344578888887767799999999998 99
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHHh
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~ig 166 (503)
+++++++.+.+.+|++|||+||+.|.++.++.+.++++|++|+++|++||+.+++.|.++|+||+++++++++|+|+.++
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~ 152 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVA 152 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccc
Q 010702 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (503)
Q Consensus 167 ~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~ 246 (503)
.+. +.++|+|+.
T Consensus 153 ~~~---~~~~~~G~~----------------------------------------------------------------- 164 (298)
T TIGR00872 153 PEE---QGYLYCGPC----------------------------------------------------------------- 164 (298)
T ss_pred CcC---CCEEEECCc-----------------------------------------------------------------
Confidence 100 011111111
Q ss_pred cccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccc
Q 010702 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (503)
Q Consensus 247 ~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (503)
+
T Consensus 165 -------------------------------------------------------------------------------G 165 (298)
T TIGR00872 165 -------------------------------------------------------------------------------G 165 (298)
T ss_pred -------------------------------------------------------------------------------c
Confidence 3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhhH
Q 010702 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (503)
Q Consensus 327 ~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (503)
++|++|++||++++++|++|+|||.|++++ +|++|+++++++|++||+++|++|+.+.++|++++.+++ |
T Consensus 166 ~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~----g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~------~ 235 (298)
T TIGR00872 166 SGHFVKMVHNGIEYGMMAAIAEGFEILRNS----QFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAE------F 235 (298)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHH------H
Confidence 456778888888888888888888888864 799999999999999999999999999999998775432 4
Q ss_pred hHH-HHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccC-CcchhHHHhhhhhcCCccccc
Q 010702 407 ARE-MVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRA-RLPANLVQAQRDLFGAHTYER 468 (503)
Q Consensus 407 ~~~-~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~-~~~~~~iqa~rd~fG~H~~~r 468 (503)
... .+++++ ||+|.+|++.|+|+|++++||+|++.++++ ++|+|+|||||||||+|+|++
T Consensus 236 ~~~~~~~~~~--r~~v~~a~~~g~p~P~~~~al~~~~~~~~~~~~~~~~~~~~r~~fg~h~~~~ 297 (298)
T TIGR00872 236 SGRVSDSGEG--RWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGGHAEKK 297 (298)
T ss_pred HHHHHhhccH--HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhCCCCcCC
Confidence 444 355555 999999999999999999999999988888 999999999999999999987
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-47 Score=382.90 Aligned_cols=299 Identities=33% Similarity=0.571 Sum_probs=243.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|+|||||+|.||.+||++|+++|++|.+|||++++++++.+.+ +..+.+++++++.++.+|+||+++|++..+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~ 73 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEG-------ATGADSLEELVAKLPAPRVVWLMVPAGEIT 73 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC-------CeecCCHHHHHhhcCCCCEEEEEecCCcHH
Confidence 4899999999999999999999999999999999998887643 467889999988654579999999998789
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHHh
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~ig 166 (503)
+++++++.+.+.+|++|||+||+.|..++++.+.++++|++|+|+||+||+.+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (301)
T PRK09599 74 DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALA 153 (301)
T ss_pred HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccc
Q 010702 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKV 246 (503)
Q Consensus 167 ~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~ 246 (503)
.+.+ .+++|+|+.|+|+++|+++|.+.++.++.+
T Consensus 154 ~~~~--~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~-------------------------------------------- 187 (301)
T PRK09599 154 PRAE--DGYLHAGPVGAGHFVKMVHNGIEYGMMQAY-------------------------------------------- 187 (301)
T ss_pred cccc--CCeEeECCCcHHHHHHHHHHHHHHHHHHHH--------------------------------------------
Confidence 2100 168888887766665555555554444444
Q ss_pred cccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccc
Q 010702 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVD 326 (503)
Q Consensus 247 ~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (503)
T Consensus 188 -------------------------------------------------------------------------------- 187 (301)
T PRK09599 188 -------------------------------------------------------------------------------- 187 (301)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhhH
Q 010702 327 KKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEF 406 (503)
Q Consensus 327 ~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~~ 406 (503)
+|+|.|+++ ++|++|+++++++|+.||+++|++++....++.+++.. +.+
T Consensus 188 --------------------aEa~~l~~~----~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~------~~~ 237 (301)
T PRK09599 188 --------------------AEGFELLEA----SRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKL------DEI 237 (301)
T ss_pred --------------------HHHHHHHHH----cCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCH------HHH
Confidence 444444443 34556666667777777777777777777776554321 112
Q ss_pred hHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHH-HHhhccCCcchhHHHhhhhhcCCcccccc
Q 010702 407 AREMVQRQAAWRRVVGLAISAGISTPGMCASLSY-FDTYRRARLPANLVQAQRDLFGAHTYERI 469 (503)
Q Consensus 407 ~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y-~~~~~~~~~~~~~iqa~rd~fG~H~~~r~ 469 (503)
...++. ..++||++..|.+.|+|+|+++++++| +.++....+|.+.+|+||||||+|+|+|.
T Consensus 238 ~~~~kd-~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h~~~~~ 300 (301)
T PRK09599 238 SGYVED-SGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGHAVKKK 300 (301)
T ss_pred HHHHHh-hCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCccCC
Confidence 112222 333499999999999999999999997 99999999999999999999999999995
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-47 Score=369.44 Aligned_cols=256 Identities=26% Similarity=0.412 Sum_probs=239.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+||||||+|.||.+||.||.++||+|++|||++++ .+.+.+.| ...+.++.|+++. +|+||+|||++.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~G-------a~~a~s~~eaa~~---aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAG-------ATVAASPAEAAAE---ADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcC-------CcccCCHHHHHHh---CCEEEEecCCHHH
Confidence 48999999999999999999999999999999999 44444444 4678899999998 9999999999999
Q ss_pred HHHHH---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHH
Q 010702 86 VDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (503)
Q Consensus 86 v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~l 161 (503)
+++|+ +++.+.+++|.++||+||..|..++++.+.++++|++|+|+|||||+.++..|+ +||+||+++++++++|+
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pv 150 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPV 150 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHH
Confidence 99999 578899999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhh
Q 010702 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (503)
Q Consensus 162 l~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~ 241 (503)
|+.+| ++++|+|+.|+|+.+|++||.+..+.+++++|++.++++.| +|++.+.+++ +.+..+||.++.+.
T Consensus 151 l~~~g------~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G-ld~~~~~~vi---~~~~~~s~~~e~~~ 220 (286)
T COG2084 151 LEAMG------KNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAG-LDPDVVLEVI---SGGAAGSWILENYG 220 (286)
T ss_pred HHHhc------CceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hccccCChHHHhhc
Confidence 99999 89999999999999999999999999999999999999999 9999999998 56788999999998
Q ss_pred hhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 242 ~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
+.+.. ++|.|+|.++++.||++ ++.++|.++|+|+|+.+.+
T Consensus 221 ~~m~~-~~~~p~F~v~~~~KDl~------la~~~A~~~g~~lP~~~~~ 261 (286)
T COG2084 221 PRMLE-GDFSPGFAVDLMLKDLG------LALDAAKELGAPLPLTALA 261 (286)
T ss_pred chhhc-CCCCcchhHHHHHHHHH------HHHHHHHhcCCCCcHHHHH
Confidence 77765 45999999999999997 9999999999999998865
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=336.96 Aligned_cols=263 Identities=23% Similarity=0.350 Sum_probs=244.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++||+||+|.||.+|+.||.++||.|+||||+.+++++|.+.|. +.+++|.|+++. +|+||.|||++.+
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga-------~v~~sPaeVae~---sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGA-------RVANSPAEVAED---SDVVITMVPNPKD 104 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhch-------hhhCCHHHHHhh---cCEEEEEcCChHh
Confidence 468999999999999999999999999999999999999998864 578999999998 9999999999999
Q ss_pred HHHHH---HHHHhcCCCCCEE-EecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHH
Q 010702 86 VDQTI---AALSEHMSPGDCI-IDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (503)
Q Consensus 86 v~~vl---~~l~~~l~~g~iI-Id~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ 160 (503)
+++++ .+++..+++|... ||.||+.|..++++.+.+..++.+|+|+|||||..+|+.|+ +||+|||++.++++.+
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~ 184 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASP 184 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHH
Confidence 99999 4667777788877 99999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhh
Q 010702 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240 (503)
Q Consensus 161 ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~ 240 (503)
+|+.+| ++++|+|..|.|..+|+++|.+....|..++|++.|+.+.| +|+..+.+++ |.|...|+.+...
T Consensus 185 ~~~~mG------k~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~G-Ld~~~l~eil---n~G~~~S~~~~~~ 254 (327)
T KOG0409|consen 185 VFKLMG------KNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLG-LDAKKLLEIL---NTGRCWSSMFYNP 254 (327)
T ss_pred HHHHhc------ceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCcccHHHhCc
Confidence 999999 99999999999999999999999999999999999999999 9999999998 5688889999988
Q ss_pred hhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010702 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (503)
Q Consensus 241 ~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s 296 (503)
.+.+.+ ++|.|+|.++++.||++ ++..+|.+.++|+|+.+.| .+-|.+
T Consensus 255 ~p~m~k-~dy~p~f~~~~m~KDLg------la~~~a~~~~~~~P~~slA-~qly~~ 302 (327)
T KOG0409|consen 255 VPGMLK-GDYNPGFALKLMVKDLG------LALNAAESVKVPMPLGSLA-HQLYKS 302 (327)
T ss_pred Cchhhc-CCCCCcchHHHHHHHHH------HHHHhhhccCCCCchHHHH-HHHHHH
Confidence 887665 45999999999999997 9999999999999999877 344443
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=335.32 Aligned_cols=274 Identities=35% Similarity=0.603 Sum_probs=242.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|+|||||+|.||.+||.+|+++|++|.+|||++++.+.+.+.+ ...+.+++++++..+.+|+||+|+|++.++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~s~~~~~~~~~~advVi~~vp~~~~~ 73 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLG-------ITARHSLEELVSKLEAPRTIWVMVPAGEVT 73 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCC-------CeecCCHHHHHHhCCCCCEEEEEecCchHH
Confidence 4799999999999999999999999999999999988886543 466789999987644469999999998899
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHHh
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~ig 166 (503)
+++++++.+.+.+|++|||+||+.|..++++.+.+.++|++|+|+||+|++.+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (299)
T PRK12490 74 ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALA 153 (299)
T ss_pred HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhcc-CCcchhHHhhhhhhc
Q 010702 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG-GLSNAELAEIFDEWNK-GELESFLVEITADIF 244 (503)
Q Consensus 167 ~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g-~~~~~~i~~~~~~~~~-g~~~s~l~~~~~~~l 244 (503)
.+. ++++|+|+.|+|+++|+++|.+.++.+++++|++.++++.| ++|++++.++ |+. +.++|++++...+++
T Consensus 154 ~~~---~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~---~~~~~~~~s~~l~~~~~~~ 227 (299)
T PRK12490 154 PEG---PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARL---WRNGSVIRSWLLDLTVKAL 227 (299)
T ss_pred CcC---CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHH---HcCCcHHHHHHHHHHHHHH
Confidence 310 27999999999999999999999999999999999999975 4788888777 565 458999999998888
Q ss_pred cccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcch
Q 010702 245 KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299 (503)
Q Consensus 245 ~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~ 299 (503)
.. +++ .+.++.+.||+ ++++|++++|.+.|+|+|++..+++.|+.+..+
T Consensus 228 ~~-~~~--~~~l~~~~KD~---~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~ 276 (299)
T PRK12490 228 AE-DPK--LAGIKGYVNDS---GEGRWTVEEAIELAVAAPVIAASLFMRFASQED 276 (299)
T ss_pred hh-CCC--hhhhhHHHHhc---CcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcc
Confidence 64 322 25678888875 456799999999999999999987788888765
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=333.63 Aligned_cols=261 Identities=22% Similarity=0.337 Sum_probs=235.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|+|||||+|.||.+||++|.++||+|.+|||++. .+++.+.+ ...+.++.++++. +|+||+|||++.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g-------~~~~~s~~~~~~~---advVi~~v~~~~~v 69 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLG-------AVSVETARQVTEA---SDIIFIMVPDTPQV 69 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHH
Confidence 4799999999999999999999999999999975 56665433 4567889998887 99999999998889
Q ss_pred HHHHH---HHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010702 87 DQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (503)
Q Consensus 87 ~~vl~---~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll 162 (503)
++++. ++.+.+.+|++|||+||..|..++++.+.+.++|+.|+++||+|++.+++.|+ .+|+||+++++++++|+|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l 149 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLF 149 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHH
Confidence 99883 46777889999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhh
Q 010702 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (503)
Q Consensus 163 ~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (503)
+.++ ++++|+|+.|+|+.+|+++|.+..+.+++++|++.++++.| +|++++.+++ +.+.+.|++++.+.+
T Consensus 150 ~~~g------~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~G-ld~~~~~~~l---~~~~~~s~~~~~~~~ 219 (292)
T PRK15059 150 ELLG------KNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAG-ADPVRVRQAL---MGGFASSRILEVHGE 219 (292)
T ss_pred HHHc------CCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcCcccCHHHHhhch
Confidence 9999 88999999999999999999999999999999999999999 9999999998 567788999998887
Q ss_pred hccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010702 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (503)
Q Consensus 243 ~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s 296 (503)
.+.. ++|+++|.++.+.||+. ++++.|++.|+|+|+...+ .+.|..
T Consensus 220 ~~~~-~~~~~~f~l~~~~KDl~------l~~~~a~~~g~~~p~~~~~-~~~~~~ 265 (292)
T PRK15059 220 RMIK-RTFNPGFKIALHQKDLN------LALQSAKALALNLPNTATC-QELFNT 265 (292)
T ss_pred hhhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 6654 56889999999999996 9999999999999988754 444443
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=326.57 Aligned_cols=263 Identities=22% Similarity=0.275 Sum_probs=233.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||.+||.+|+++||+|++|||++++.+++.+.+ +..+.++.+++++ +|+||+|+|+...+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g-------~~~~~s~~~~~~~---aDvVi~~vp~~~~~ 71 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKG-------ATPAASPAQAAAG---AEFVITMLPNGDLV 71 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CcccCCHHHHHhc---CCEEEEecCCHHHH
Confidence 5899999999999999999999999999999999999887654 3457788888887 99999999998778
Q ss_pred HHHH---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010702 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (503)
Q Consensus 87 ~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll 162 (503)
+.++ +++.+.+++|.+|||+||..|..++++.+.+.++|+.|+|+||+|++..+..|. ++|+||+++++++++|+|
T Consensus 72 ~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l 151 (296)
T PRK15461 72 RSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPIL 151 (296)
T ss_pred HHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHH
Confidence 8887 357777889999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhh
Q 010702 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (503)
Q Consensus 163 ~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (503)
+.+| +.++|+|+.|+|+.+|+++|.+....+++++|++.++++.| +|++.+.+++. .+...++.+....+
T Consensus 152 ~~~g------~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-ld~~~~~~~l~---~~~~~~~~~~~~~~ 221 (296)
T PRK15461 152 MAMG------NELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALG-LSFDVALKVMS---GTAAGKGHFTTTWP 221 (296)
T ss_pred HHHc------CCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHh---cCcccChHHHcccc
Confidence 9999 78999999999999999999999999999999999999999 99999999984 44445555554433
Q ss_pred -hccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010702 243 -IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (503)
Q Consensus 243 -~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~ 297 (503)
.+.. ++|+++|.++.+.||+. ++.++|.+.|+|+|+...+ .++|..+
T Consensus 222 ~~~~~-~~~~~~f~~~~~~KD~~------l~~~~a~~~g~~~p~~~~~-~~~~~~a 269 (296)
T PRK15461 222 NKVLK-GDLSPAFMIDLAHKDLG------IALDVANQLHVPMPLGAAS-REVYSQA 269 (296)
T ss_pred chhcc-CCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 4443 56899999999999996 9999999999999998765 5555544
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=316.45 Aligned_cols=260 Identities=22% Similarity=0.288 Sum_probs=232.8
Q ss_pred EEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHHHHH
Q 010702 11 LAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTI 90 (503)
Q Consensus 11 IIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl 90 (503)
|||+|.||.+||++|+++||+|.+|||++++.+.+.+.+ +..+.++.+++++ +|+||+|||++.++++++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~---advVil~vp~~~~~~~v~ 70 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAG-------AQAAASPAEAAEG---ADRVITMLPAGQHVISVY 70 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHHHHHH
Confidence 689999999999999999999999999999998887654 4567789998887 999999999987889998
Q ss_pred ---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHHHHHh
Q 010702 91 ---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVA 166 (503)
Q Consensus 91 ---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll~~ig 166 (503)
+++.+.+.+|++|||+||..|..++++.+.+.++|++|+++||+||+.++..|+ .+|+||+++.+++++++|+.++
T Consensus 71 ~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g 150 (288)
T TIGR01692 71 SGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMG 150 (288)
T ss_pred cCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhc
Confidence 788888899999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhh---
Q 010702 167 AQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI--- 243 (503)
Q Consensus 167 ~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~--- 243 (503)
++++|+|+.|+|+.+|+++|.+.++.+++++|++.++++.| +|++++.+++ +.+.+.||..+.+.+.
T Consensus 151 ------~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~~---~~~~~~s~~~~~~~~~~~~ 220 (288)
T TIGR01692 151 ------RNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLG-LDPKVLFEIA---NTSSGRCWSSDTYNPVPGV 220 (288)
T ss_pred ------CCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCcHHHHhCCCccc
Confidence 88999999999999999999999999999999999999999 9999999998 5667778877765442
Q ss_pred ---ccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010702 244 ---FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (503)
Q Consensus 244 ---l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~ 297 (503)
....++|+++|.++.+.||++ ++.+.|.+.|+|+|+...+ .+.|..+
T Consensus 221 ~~~~~~~~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~a 270 (288)
T TIGR01692 221 MPQAPASNGYQGGFGTALMLKDLG------LAQDAAKSAGAPTPLGALA-RQLYSLF 270 (288)
T ss_pred cccccccCCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 112256889999999999996 9999999999999988765 4555443
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=360.39 Aligned_cols=262 Identities=17% Similarity=0.282 Sum_probs=241.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
.+|||||+|.||.+||.||+++||+|.+|||++++++++.+.| ...++|+.|++++ +|+||+|||++.++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~G-------a~~~~s~~e~a~~---advVi~~l~~~~~v 74 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELG-------GHRCDSPAEAAKD---AAALVVVLSHPDQV 74 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEEcCChHHH
Confidence 5799999999999999999999999999999999999998765 4678999999998 99999999999999
Q ss_pred HHHH---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcC--ccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHH
Q 010702 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG--LLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (503)
Q Consensus 87 ~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~g--i~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ 160 (503)
++|+ +++++.+.+|++|||+||..|..++++.+.++++| +.|+|+||+||+.+++.|. ++|+||+++++++++|
T Consensus 75 ~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p 154 (1378)
T PLN02858 75 DDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQP 154 (1378)
T ss_pred HHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHH
Confidence 9998 57888899999999999999999999999999999 9999999999999999999 9999999999999999
Q ss_pred HHHHHhcccCCCCcEEEe-CCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhh
Q 010702 161 ILQKVAAQVDDGPCVTYI-GEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239 (503)
Q Consensus 161 ll~~ig~~~~~~~~v~~~-G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~ 239 (503)
+|+.+| +.++++ |+.|+|+.+|+++|.+.++.+++++|++.++++.| ++++.+.+++ +.+.+.|++++.
T Consensus 155 ~l~~~g------~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~G-ld~~~l~~vl---~~s~g~s~~~~~ 224 (1378)
T PLN02858 155 FLSAMC------QKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAG-IHPWIIYDII---SNAAGSSWIFKN 224 (1378)
T ss_pred HHHHhc------CceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCHHHHh
Confidence 999999 778764 99999999999999999999999999999999999 9999999998 567788999998
Q ss_pred hhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010702 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (503)
Q Consensus 240 ~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s 296 (503)
+.+.+.. ++|.++|.++++.||++ +++++|.++|+|+|+...+ .++|..
T Consensus 225 ~~~~~~~-~d~~~~F~l~l~~KDl~------la~~~A~~~g~~lpl~~~a-~~~~~~ 273 (1378)
T PLN02858 225 HVPLLLK-DDYIEGRFLNVLVQNLG------IVLDMAKSLPFPLPLLAVA-HQQLIS 273 (1378)
T ss_pred hhhHhhc-CCCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 8876655 56899999999999997 9999999999999998765 455543
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=306.71 Aligned_cols=265 Identities=21% Similarity=0.308 Sum_probs=237.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
|+|+|||||+|.||..+|.+|+++|++|.+|||++++.+++.+.+ +..+.++++++++ +|+||+|+|+..
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~~~~e~~~~---~d~vi~~vp~~~ 70 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAG-------AETASTAKAVAEQ---CDVIITMLPNSP 70 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEeCCCHH
Confidence 357899999999999999999999999999999999988876643 4567788998877 999999999888
Q ss_pred hHHHHH---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHH
Q 010702 85 PVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (503)
Q Consensus 85 ~v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ 160 (503)
.++.++ +++.+.+.+|++|+|+||..|..++++.+.+.++|++|+++|++|++..+..|. .+|+||++++++++++
T Consensus 71 ~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ 150 (296)
T PRK11559 71 HVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYD 150 (296)
T ss_pred HHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHH
Confidence 888887 567888899999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhh
Q 010702 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240 (503)
Q Consensus 161 ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~ 240 (503)
+|+.++ ..++++|+.|+|+.+|+++|.+.++.+++++|++.++++.| ++++++.+++ ..+.+.|++++..
T Consensus 151 ~l~~~~------~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-i~~~~~~~~l---~~~~~~s~~~~~~ 220 (296)
T PRK11559 151 LMKAMA------GSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAG-VNPDLVYQAI---RGGLAGSTVLDAK 220 (296)
T ss_pred HHHHhc------CCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhh
Confidence 999999 78999999999999999999999999999999999999999 9999999887 5677788888887
Q ss_pred hhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010702 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (503)
Q Consensus 241 ~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~ 297 (503)
.+.+.. ++|.++|.++...||+. .+++.|++.|+|+|+...+ ..+|..+
T Consensus 221 ~~~~~~-~d~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~~ 269 (296)
T PRK11559 221 APMVMD-RNFKPGFRIDLHIKDLA------NALDTSHGVGAPLPLTAAV-MEMMQAL 269 (296)
T ss_pred chHhhc-CCCCCCcchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 766544 46888999999999986 8999999999999998865 4555443
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=304.16 Aligned_cols=262 Identities=21% Similarity=0.354 Sum_probs=235.7
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHH
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 87 (503)
+|||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ ...+.++.+++++ +|+||+|+|+..+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---aDivi~~vp~~~~~~ 70 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAG-------AVTAETARQVTEQ---ADVIFTMVPDSPQVE 70 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CcccCCHHHHHhc---CCEEEEecCCHHHHH
Confidence 599999999999999999999999999999999998887654 3456788888887 999999999988888
Q ss_pred HHH---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHHH
Q 010702 88 QTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQ 163 (503)
Q Consensus 88 ~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll~ 163 (503)
.++ .++.+.+.+|.+|||+||..|.+++++.+.++++|++|+++|++|++..+..|. .+|+||+++++++++++|+
T Consensus 71 ~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~ 150 (291)
T TIGR01505 71 EVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFE 150 (291)
T ss_pred HHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHH
Confidence 887 457777889999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred HHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhh
Q 010702 164 KVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243 (503)
Q Consensus 164 ~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~ 243 (503)
.++ ++++++|+.|.|+.+|+++|.+....+++++|++.++++.| ++++++.+++ ..+.+.|++++.+.+.
T Consensus 151 ~lg------~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-id~~~~~~~l---~~~~~~s~~~~~~~~~ 220 (291)
T TIGR01505 151 ALG------KNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-VDPVRVRQAL---RGGLAGSTVLEVKGER 220 (291)
T ss_pred Hhc------CCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhhChh
Confidence 999 78999999999999999999999999999999999999999 9999999998 4566789998888776
Q ss_pred ccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010702 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (503)
Q Consensus 244 l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~ 297 (503)
+.. ++|.++|.++.+.||+. ++++.|.+.|+|+|+...+ .++|..+
T Consensus 221 ~~~-~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~~~~~~~-~~~~~~a 266 (291)
T TIGR01505 221 VID-RTFKPGFRIDLHQKDLN------LALDSAKAVGANLPNTATV-QELFNTL 266 (291)
T ss_pred hhc-CCCCCCcchHHHHHHHH------HHHHHHHHcCCCChhHHHH-HHHHHHH
Confidence 654 56889999999999996 8999999999999998875 4555443
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=346.80 Aligned_cols=270 Identities=18% Similarity=0.254 Sum_probs=242.0
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|+..++++|||||+|.||.+||.+|+++||+|.+|||++++.+.+.+.+ ...+.++.+++++ +|+||+||
T Consensus 319 ~~~~~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------a~~~~s~~e~~~~---aDvVi~~V 388 (1378)
T PLN02858 319 MQAKPVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAG-------GLAGNSPAEVAKD---VDVLVIMV 388 (1378)
T ss_pred ccccCCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEec
Confidence 4444557899999999999999999999999999999999999887764 3457899999988 99999999
Q ss_pred CCChhHHHHH---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh--cCccEecccCCCChhhhhcCC-cccCCCCHHH
Q 010702 81 KAGSPVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLGMGVSGGEEGARHGP-SLMPGGSFEA 154 (503)
Q Consensus 81 p~~~~v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a 154 (503)
|++.++++++ .++++.+.+|++|||+||+.|..++++.+.+++ +|++|+++||+||+.++..|+ ++|+||++++
T Consensus 389 ~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~ 468 (1378)
T PLN02858 389 ANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEA 468 (1378)
T ss_pred CChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHH
Confidence 9988999998 467788889999999999999999999999998 899999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEe-CCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcc
Q 010702 155 YNNIRDILQKVAAQVDDGPCVTYI-GEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELE 233 (503)
Q Consensus 155 ~~~v~~ll~~ig~~~~~~~~v~~~-G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~ 233 (503)
+++++|+|+.++ +.++++ |+.|+|+.+|+++|.+.+..+++++|++.++++.| +|++.+.+++ +.+.+.
T Consensus 469 ~~~~~plL~~lg------~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~G-ld~~~l~evl---~~s~g~ 538 (1378)
T PLN02858 469 LKSAGSVLSALS------EKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLG-LNTRKLFDII---SNAGGT 538 (1378)
T ss_pred HHHHHHHHHHHh------CcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---Hhhccc
Confidence 999999999999 778875 67999999999999999999999999999999999 9999999998 456678
Q ss_pred hhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcc
Q 010702 234 SFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGL 298 (503)
Q Consensus 234 s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~ 298 (503)
||.++.+.+.+.. ++|+++|.++.+.||+. ++++.|.++|+|+|+...+ .++|..+.
T Consensus 539 s~~~~~~~~~~l~-~d~~~~f~l~l~~KDl~------l~~~~a~~~g~~~pl~~~~-~~~~~~a~ 595 (1378)
T PLN02858 539 SWMFENRVPHMLD-NDYTPYSALDIFVKDLG------IVSREGSSRKIPLHLSTVA-HQLFLAGS 595 (1378)
T ss_pred Chhhhhccchhhc-CCCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHHH
Confidence 8988877766654 56889999999999996 9999999999999988764 55665543
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=244.62 Aligned_cols=159 Identities=27% Similarity=0.468 Sum_probs=142.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|++|||||+|.||.+||++|+++||+|++|||++++.+++.+.+ ++.++|++|++++ +|+||+|||++.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~s~~e~~~~---~dvvi~~v~~~~~ 70 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG-------AEVADSPAEAAEQ---ADVVILCVPDDDA 70 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT-------EEEESSHHHHHHH---BSEEEE-SSSHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh-------hhhhhhhhhHhhc---ccceEeecccchh
Confidence 57999999999999999999999999999999999999998864 5789999999998 9999999999999
Q ss_pred HHHHHHH--HHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010702 86 VDQTIAA--LSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (503)
Q Consensus 86 v~~vl~~--l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll 162 (503)
+++++.+ +.+.+.+|++|||+||..|..++++.+.+.++|++|+|+||+||+.+++.|+ ++|+||+++++++++|+|
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l 150 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLL 150 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHH
Confidence 9999988 9999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhcccCCCCcEEE-eCC
Q 010702 163 QKVAAQVDDGPCVTY-IGE 180 (503)
Q Consensus 163 ~~ig~~~~~~~~v~~-~G~ 180 (503)
+.++ .+++| +|+
T Consensus 151 ~~~~------~~v~~~~G~ 163 (163)
T PF03446_consen 151 EAMG------KNVYHYVGP 163 (163)
T ss_dssp HHHE------EEEEEE-ES
T ss_pred HHHh------CCceeeeCc
Confidence 9999 77884 475
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=251.45 Aligned_cols=251 Identities=18% Similarity=0.170 Sum_probs=206.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhccC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~i~~~~s~~e~~~~l~ 71 (503)
|+|+|||+|.||.++|.+|+++||+|++||+++++++.+.+.. ...| +++.+.++.++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g--~l~~~~~~~~~~~~-- 76 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAG--RLRATTDYEDAIRD-- 76 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcC--CeEEECCHHHHHhh--
Confidence 4899999999999999999999999999999999988776421 0011 35677788887776
Q ss_pred CCcEEEEecCCCh---------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc--Ccc-EecccCCCChhh
Q 010702 72 RPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLL-YLGMGVSGGEEG 139 (503)
Q Consensus 72 ~~dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~-~i~~pvsgg~~~ 139 (503)
+|+||+|||++. .+..+++++.+.+++|++||++||..|.+++++...+.++ |.. +.+.|++++|+.
T Consensus 77 -advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~ 155 (411)
T TIGR03026 77 -ADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEF 155 (411)
T ss_pred -CCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCc
Confidence 999999999874 3778888999999999999999999999999887666544 443 667888888888
Q ss_pred hhcCC---------cccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010702 140 ARHGP---------SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (503)
Q Consensus 140 a~~G~---------~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~ 210 (503)
+..|. .+++|+++++.++++++|+.++. ..++++++.+.|+.+|+++|.+.+..+++++|+..+++
T Consensus 156 ~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~ 230 (411)
T TIGR03026 156 LREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIE-----DGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICE 230 (411)
T ss_pred CCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcc-----CCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776 57899999999999999999971 25888999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCch--hHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHH
Q 010702 211 HVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGE--LVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (503)
Q Consensus 211 ~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~--~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~ 288 (503)
+.| +|.+++.+++. .+. .+.. ..|.|+| ....+.||+. +.+..|.++|+++|++.+
T Consensus 231 ~~G-iD~~~v~~~~~---~~~----------~i~~--~~~~pg~g~gg~c~~KD~~------~l~~~a~~~g~~~~l~~~ 288 (411)
T TIGR03026 231 ALG-IDVYEVIEAAG---TDP----------RIGF--NFLNPGPGVGGHCIPKDPL------ALIYKAKELGYNPELIEA 288 (411)
T ss_pred HhC-CCHHHHHHHhC---CCC----------CCCC--CcCCCCCCCCCCchhhhHH------HHHHHHHhcCCCcHHHHH
Confidence 999 99999999872 221 1111 2355554 4566888885 888999999999999887
Q ss_pred H
Q 010702 289 S 289 (503)
Q Consensus 289 A 289 (503)
+
T Consensus 289 ~ 289 (411)
T TIGR03026 289 A 289 (411)
T ss_pred H
Confidence 6
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-24 Score=222.10 Aligned_cols=206 Identities=13% Similarity=0.078 Sum_probs=169.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh------------ccCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL------------SIQRP 73 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~------------~l~~~ 73 (503)
+++|+|||+|.||.++|.+|+++||+|++||+++++++.+.... .. + ....+++++. .++.+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~-~~----~-~e~~l~~~l~~~~~~g~l~~~~~~~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGE-IH----I-VEPDLDMVVKTAVEGGYLRATTTPEPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCC-CC----c-CCCCHHHHHHHHhhcCceeeecccccC
Confidence 36899999999999999999999999999999999998754321 10 0 0112222211 02249
Q ss_pred cEEEEecCCC---------hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc--------------Eec
Q 010702 74 RSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL--------------YLG 130 (503)
Q Consensus 74 dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~--------------~i~ 130 (503)
|+||+|||++ ..+..+++++.+.+++|++||+.||+.|..++++...+.+++.. ++.
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~ 156 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAY 156 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEE
Confidence 9999999987 57888889999999999999999999999999998888765432 355
Q ss_pred cc--CCCChhhhhcCC-cccCCC-CHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHH
Q 010702 131 MG--VSGGEEGARHGP-SLMPGG-SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAY 206 (503)
Q Consensus 131 ~p--vsgg~~~a~~G~-~i~~gg-~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~ 206 (503)
+| +.+|...+..+. ..++|| +++++++++++|+.++ +.++++++.++|+.+|+++|.+.+..+++++|+.
T Consensus 157 ~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~------~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~ 230 (415)
T PRK11064 157 CPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFL------EGECVVTNSRTAEMCKLTENSFRDVNIAFANELS 230 (415)
T ss_pred CCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhc------CCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 666665555555 567788 9999999999999999 6778999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH
Q 010702 207 DVLKHVGGLSNAELAEIF 224 (503)
Q Consensus 207 ~l~~~~g~~~~~~i~~~~ 224 (503)
.++++.| +|..++.+.+
T Consensus 231 ~lae~~G-iD~~~v~~~~ 247 (415)
T PRK11064 231 LICADQG-INVWELIRLA 247 (415)
T ss_pred HHHHHhC-CCHHHHHHHh
Confidence 9999999 9999999886
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=219.81 Aligned_cols=284 Identities=13% Similarity=0.053 Sum_probs=205.0
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----C-CC--CeeeeCCHHHHHhccCCC
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----G-QL--PLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g-~~--~i~~~~s~~e~~~~l~~~ 73 (503)
|++ +|+|+|||+|.||..+|.+|+++||+|++|+|++++.+.+...+... + .+ ++..+++++++++. +
T Consensus 1 ~~~--~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~---a 75 (328)
T PRK14618 1 MHH--GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG---A 75 (328)
T ss_pred CCC--CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC---C
Confidence 555 35899999999999999999999999999999999888877542110 0 00 14567788887776 9
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCC-Chhh--HHHHHHHHHh---cCccEecccCCCChhhhhcCC-cc
Q 010702 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLN--TERRIHEASQ---KGLLYLGMGVSGGEEGARHGP-SL 146 (503)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~-~~~~--t~~~~~~l~~---~gi~~i~~pvsgg~~~a~~G~-~i 146 (503)
|+||+++|+. ++++++ +.+.++.++|+++++ .+.. .+.+.+.+.+ +++.+++.|......+...+. .+
T Consensus 76 D~Vi~~v~~~-~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~ 150 (328)
T PRK14618 76 DFAVVAVPSK-ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATV 150 (328)
T ss_pred CEEEEECchH-HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEE
Confidence 9999999996 566665 445678899999995 4443 5566666655 566666666554443333455 77
Q ss_pred cCCCCHHHHHHHHHHHHHHhcccCCCCcEE--------EeCC---------cchhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 010702 147 MPGGSFEAYNNIRDILQKVAAQVDDGPCVT--------YIGE---------GGSGNFVKMVHNGIEYGDMQLISEAYDVL 209 (503)
Q Consensus 147 ~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~--------~~G~---------~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~ 209 (503)
+.|++++.+++++++|+..+. .++ +++. .|.+..+|+.+|......++.++|++.++
T Consensus 151 ~~~~~~~~~~~v~~ll~~~~~------~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la 224 (328)
T PRK14618 151 VASPEPGLARRVQAAFSGPSF------RVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFG 224 (328)
T ss_pred EEeCCHHHHHHHHHHhCCCcE------EEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 899999999999999998883 343 3443 58999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHhcc-CCcchhHHhhhh--hhcccc---ccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCc
Q 010702 210 KHVGGLSNAELAEIFDEWNK-GELESFLVEITA--DIFKVK---DEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAA 283 (503)
Q Consensus 210 ~~~g~~~~~~i~~~~~~~~~-g~~~s~l~~~~~--~~l~~~---~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~ 283 (503)
++.| ++++++.++....+- ++..|+..+.+. ..+.+. +++.++|.+....||+. .+.+.+.++++++
T Consensus 225 ~~~G-~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~------~~~~la~~~~~~~ 297 (328)
T PRK14618 225 VALG-AEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVK------ALDAWAKAHGHDL 297 (328)
T ss_pred HHhC-CCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHH------HHHHHHHHhCCCC
Confidence 9999 999999887521000 233455555542 123322 12344566667777774 8999999999999
Q ss_pred chHHHHHHHHHHhcchHHHHHHHHHh
Q 010702 284 PTIAASLDCRYLSGLKEEREKAAKVL 309 (503)
Q Consensus 284 p~~~~Av~~r~~s~~~~~r~~~~~~~ 309 (503)
|++..+ .+.+...+++.......+
T Consensus 298 Pl~~~~--~~~~~~~~~~~~~~~~~~ 321 (328)
T PRK14618 298 PIVEAV--ARVARGGWDPLAGLRSLM 321 (328)
T ss_pred CHHHHH--HHHHhCCCCHHHHHHHHh
Confidence 998754 355555556666665555
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=217.74 Aligned_cols=249 Identities=12% Similarity=0.115 Sum_probs=185.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc------------CCCCeeeeCCHHHHHhccCC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE------------GQLPLTGHYTPRDFVLSIQR 72 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~------------g~~~i~~~~s~~e~~~~l~~ 72 (503)
..|||||||+|.||.++|.+|++ ||+|++||+++++++.+. .|... + ++...++. +.+++
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g--~l~~t~~~-~~~~~--- 76 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREAR--YLKFTSEI-EKIKE--- 76 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhC--CeeEEeCH-HHHcC---
Confidence 34799999999999999999887 699999999999999987 33210 0 12333333 45555
Q ss_pred CcEEEEecCCC---------hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh--cCccEec--------ccC
Q 010702 73 PRSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLG--------MGV 133 (503)
Q Consensus 73 ~dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~gi~~i~--------~pv 133 (503)
+|++|+|||++ ..+....+.+.+.+++|++||+.||+.|.+++++.+...+ .|..+.+ .++
T Consensus 77 advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v 156 (425)
T PRK15182 77 CNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERI 156 (425)
T ss_pred CCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcC
Confidence 99999999987 3445555788899999999999999999999976554433 3655544 356
Q ss_pred CCChhhhhcCC--cccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010702 134 SGGEEGARHGP--SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH 211 (503)
Q Consensus 134 sgg~~~a~~G~--~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~ 211 (503)
.+|......+. .++.|++++..+.++++++.+.. ..++++++.++|+++|+++|.+.+..+++++|+..++++
T Consensus 157 ~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~-----~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~ 231 (425)
T PRK15182 157 NPGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIIS-----AGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNR 231 (425)
T ss_pred CCCcccccccCCCeEEECCCHHHHHHHHHHHHHHhh-----cCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665554443 57778888888999999999872 246788999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 212 VGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 212 ~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
.| +|..++.+++ +.. |.+....+ +.+++ .-+-+|.. ..+..|.++|++.+++.+|
T Consensus 232 ~G-iD~~~v~~a~---~~~----~~~~~~~p-----G~vGG----~ClpkD~~------~L~~~a~~~g~~~~l~~~a 286 (425)
T PRK15182 232 LN-IDTEAVLRAA---GSK----WNFLPFRP-----GLVGG----HCIGVDPY------YLTHKSQGIGYYPEIILAG 286 (425)
T ss_pred hC-cCHHHHHHHh---cCC----CCcccCCC-----Ccccc----ccccccHH------HHHHHHHhcCCCcHHHHHH
Confidence 99 9999999885 111 21111100 11222 23444542 4456788999998888766
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=214.05 Aligned_cols=283 Identities=12% Similarity=0.068 Sum_probs=192.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC---C----CCeeeeCCHHHHHhccCCCcEEEE
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG---Q----LPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g---~----~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
||||+|||+|.||..+|.+|+++|++|++|+|++++++.+.+.+.... . .++....+++++++. +|+||+
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi~ 77 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD---ADLILV 77 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC---CCEEEE
Confidence 468999999999999999999999999999999999888876531100 0 024566788877776 999999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCC-ChhhHHHHHHHHHhc-----CccEecccCCCChhhhhcCC-cccCCCC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLNTERRIHEASQK-----GLLYLGMGVSGGEEGARHGP-SLMPGGS 151 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~-~~~~t~~~~~~l~~~-----gi~~i~~pvsgg~~~a~~G~-~i~~gg~ 151 (503)
|||+ ..++++++++.+.+.++++||+++++ .+...+++.+.+.+. ...++..|..+....+..+. .++.|++
T Consensus 78 ~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~ 156 (325)
T PRK00094 78 AVPS-QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTD 156 (325)
T ss_pred eCCH-HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCC
Confidence 9999 58999999999988899999999844 443344444555443 23345556554443333334 5667789
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcEEEeCC-----------------cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 010702 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGE-----------------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (503)
Q Consensus 152 ~~a~~~v~~ll~~ig~~~~~~~~v~~~G~-----------------~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~ 214 (503)
.+.++++.++|+..+ ..+.+..+ .|.+..+|+.+|.+....++.++|++.++++.|
T Consensus 157 ~~~~~~~~~~l~~~~------~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G- 229 (325)
T PRK00094 157 EELAERVQELFHSPY------FRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALG- 229 (325)
T ss_pred HHHHHHHHHHhCCCC------EEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-
Confidence 999999999999887 33433322 378888999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcc-CCcchhHHhhhh--hhccccccC-----CCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchH
Q 010702 215 LSNAELAEIFDEWNK-GELESFLVEITA--DIFKVKDEY-----GEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTI 286 (503)
Q Consensus 215 ~~~~~i~~~~~~~~~-g~~~s~l~~~~~--~~l~~~~~~-----~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~ 286 (503)
++++.+.++...-+. ....|+..+.+. ..+.....+ ..+ .+....||+. .++++|.++|+|+|+.
T Consensus 230 ~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~------~~~~~a~~~~~~~P~~ 302 (325)
T PRK00094 230 ANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAK------AVYELAKKLGVEMPIT 302 (325)
T ss_pred CChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHH------HHHHHHHHhCCCCCHH
Confidence 999998776421000 001111111111 111110100 000 1223345553 7889999999999998
Q ss_pred HHHHHHHHHhcchHHHHHHHHH
Q 010702 287 AASLDCRYLSGLKEEREKAAKV 308 (503)
Q Consensus 287 ~~Av~~r~~s~~~~~r~~~~~~ 308 (503)
.++ . +.+...++.+..+..+
T Consensus 303 ~~~-~-~~~~~~~~~~~~~~~~ 322 (325)
T PRK00094 303 EAV-Y-AVLYEGKDPREAVEDL 322 (325)
T ss_pred HHH-H-HHHcCCCCHHHHHHHH
Confidence 864 3 4455556566555444
|
|
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-24 Score=211.67 Aligned_cols=118 Identities=14% Similarity=0.290 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhhHh
Q 010702 328 KRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFA 407 (503)
Q Consensus 328 ~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~~~ 407 (503)
||||||||||||||+||.|+|+|++|+...+..+ .++.+|++.||.| .|+||||+++.++|++++..+..|+|.+.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~--~ei~~vf~~Wn~g-~l~S~Lieit~~il~~~d~~g~~lld~I~d 77 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSN--EEIADVFEEWNKG-ELRSYLIEITADILRKKDETGGPLLDKILD 77 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--H--HHHHHHHHHHHTT-TT-BHHHHHHHHHHT-B-TTSSBGGGGB-S
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccch--hHHHHHHHHHCcC-chhhHHHHHHHHHHhhccCccCcchhhhCC
Confidence 7999999999999999999999999997643222 4677778889988 699999999999999877666789999999
Q ss_pred HHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 408 REMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 408 ~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
...++|+| +|++++|++.|||+|+|++||+ ++++++.+|..
T Consensus 78 ~a~~kGtG--~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~ 120 (291)
T PF00393_consen 78 KAGQKGTG--KWTVQEALELGVPAPTIAAAVFARFLSAQKEERVA 120 (291)
T ss_dssp ----BSHH--HHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCCCCcc--chHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHH
Confidence 99999999 9999999999999999999999 78888888764
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=203.87 Aligned_cols=251 Identities=12% Similarity=0.080 Sum_probs=185.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH-----------HhhcccC------CCCeeeeCCHHHHHhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL-----------DRAHREG------QLPLTGHYTPRDFVLS 69 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~~~~~g------~~~i~~~~s~~e~~~~ 69 (503)
++|+|||+|.||.+||.+|+++|++|++||++++..+... +.+...+ .-++....++++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 5899999999999999999999999999999998776543 2211000 0024677888887776
Q ss_pred cCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccC
Q 010702 70 IQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMP 148 (503)
Q Consensus 70 l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~ 148 (503)
+|+|++|+|+..+++..+ ..+.+.. ++++++.+|++ .....++.+.+...+..+.++|+++.... ....++
T Consensus 83 ---ad~Vi~avpe~~~~k~~~~~~l~~~~-~~~~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~~---~lveiv 154 (308)
T PRK06129 83 ---ADYVQESAPENLELKRALFAELDALA-PPHAILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYLI---PVVEVV 154 (308)
T ss_pred ---CCEEEECCcCCHHHHHHHHHHHHHhC-CCcceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCcccC---ceEEEe
Confidence 999999999976666554 5555544 45566665554 44566777777767778888999763211 123455
Q ss_pred ---CCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010702 149 ---GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (503)
Q Consensus 149 ---gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 225 (503)
+++++++++++++++.+| +.++++++.+.|+ +.|.+ .+++++|++.++++.| +|++++++++.
T Consensus 155 ~~~~t~~~~~~~~~~~~~~lG------~~~v~v~~~~~G~----i~nrl---~~a~~~EA~~l~~~g~-~~~~~id~~~~ 220 (308)
T PRK06129 155 PAPWTAPATLARAEALYRAAG------QSPVRLRREIDGF----VLNRL---QGALLREAFRLVADGV-ASVDDIDAVIR 220 (308)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEEEEecCCCccH----HHHHH---HHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 489999999999999999 8899999888887 33444 4478899999999998 99999999973
Q ss_pred HhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHH
Q 010702 226 EWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLD 291 (503)
Q Consensus 226 ~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~ 291 (503)
.+.+.+|.+ ..+.... |.+++++....+.++.. +..+.+.+.+.|.|++..-+.
T Consensus 221 ---~~~g~~~~~--~gp~~~~-d~~~~~g~~~~~~k~~~------l~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK06129 221 ---DGLGLRWSF--MGPFETI-DLNAPGGVADYAQRYGP------MYRRMAAERGQPVPWDGELVA 274 (308)
T ss_pred ---hccCCCccC--cCHHHHH-hccccccHHHHHHHHHH------HHHhhccccCCCchhhHHHHH
Confidence 555566554 3343332 45667788888888875 777888889999998876543
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=208.60 Aligned_cols=200 Identities=16% Similarity=0.193 Sum_probs=162.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc-----------cCCCCeeeeCCHHHHHhccCCCcE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR-----------EGQLPLTGHYTPRDFVLSIQRPRS 75 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-----------~g~~~i~~~~s~~e~~~~l~~~dv 75 (503)
|||+|||+|.||.++|..|+. ||+|++||+++++++.+.+.... ....+++...++.+++.+ +|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~---ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD---ADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC---CCE
Confidence 489999999999999987775 99999999999999888752100 000134445557777766 999
Q ss_pred EEEecCCC----------hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-
Q 010702 76 VIILVKAG----------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP- 144 (503)
Q Consensus 76 Iil~vp~~----------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~- 144 (503)
||+|||++ ..++++++++.+ +++|++||+.||+.|.+++++.+.+.+.++.| +|+.++.|.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~-------~PE~l~~G~a 148 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF-------SPEFLREGKA 148 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE-------CcccccCCcc
Confidence 99999987 577888888887 68999999999999999999998887766555 344555553
Q ss_pred --------cccCCCCHHHHHHHHHHHHH--HhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 010702 145 --------SLMPGGSFEAYNNIRDILQK--VAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (503)
Q Consensus 145 --------~i~~gg~~~a~~~v~~ll~~--ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~ 214 (503)
.++.|++++..+++.++|.. ++. ...+++++.++|.++|+++|.+.+..+++++|+..++++.|
T Consensus 149 ~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~G- 222 (388)
T PRK15057 149 LYDNLHPSRIVIGERSERAERFAALLQEGAIKQ-----NIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLG- 222 (388)
T ss_pred cccccCCCEEEEEcCcHHHHHHHHHHHhhhhcC-----CCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 57889988888999898854 441 23347899999999999999999999999999999999999
Q ss_pred CCHHHHHHHH
Q 010702 215 LSNAELAEIF 224 (503)
Q Consensus 215 ~~~~~i~~~~ 224 (503)
+|.+++.+++
T Consensus 223 iD~~eV~~a~ 232 (388)
T PRK15057 223 LNTRQIIEGV 232 (388)
T ss_pred cCHHHHHHHh
Confidence 9999999987
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-23 Score=207.83 Aligned_cols=122 Identities=11% Similarity=0.197 Sum_probs=109.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCC-CCCCcc
Q 010702 324 HVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPN-LASLVV 402 (503)
Q Consensus 324 ~~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~-~~~ll~ 402 (503)
++++||||||||||||||+||.++|.|++||..-.... .++.+|+.-||.| .+.|||+++++++|+.+++ ..+.|+
T Consensus 175 ~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~--~ei~~vF~~WN~g-eL~SYLIeIT~~IL~~kD~~~~kplv 251 (473)
T COG0362 175 PDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSA--EEIAEVFEEWNKG-ELDSYLIEITADILRKKDEEGGKPLV 251 (473)
T ss_pred CCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHhccC-cchHHHHHHHHHHHhhcCcccCCchH
Confidence 46899999999999999999999999999997654443 5566667779999 9999999999999997654 456999
Q ss_pred hhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 403 DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 403 ~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
|.+++.+.||+|| ||+++.|+++|+|+|.|++|++ |+++++.+|..
T Consensus 252 d~ILD~AgQKGTG--kWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~ 299 (473)
T COG0362 252 DKILDKAGQKGTG--KWTVISALDLGVPLTLITEAVFARYLSSLKDERVA 299 (473)
T ss_pred HHHHHHhcCCCcc--hhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999 9999999999999999999999 89999988864
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-22 Score=201.86 Aligned_cols=260 Identities=15% Similarity=0.164 Sum_probs=185.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.|||+|||+|.||++||.+|+++||+|.+|+|++. .++++++++ +|+||+++|+ ..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------------------~~~~~~~~~---advvi~~vp~-~~ 59 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------------------LSLAAVLAD---ADVIVSAVSM-KG 59 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------------------CCHHHHHhc---CCEEEEECCh-HH
Confidence 36899999999999999999999999999999853 256677776 9999999999 48
Q ss_pred HHHHHHHHHhc-CCCCCEEEecCC-CChhhHHHHHHHHHhcCccEecccCC--CChhhhh---c--CC-cccCCCCHHHH
Q 010702 86 VDQTIAALSEH-MSPGDCIIDGGN-EWYLNTERRIHEASQKGLLYLGMGVS--GGEEGAR---H--GP-SLMPGGSFEAY 155 (503)
Q Consensus 86 v~~vl~~l~~~-l~~g~iIId~st-~~~~~t~~~~~~l~~~gi~~i~~pvs--gg~~~a~---~--G~-~i~~gg~~~a~ 155 (503)
++++++++.++ +.++.+||++++ ..|.......+.+.. +|.+.|+. +|+..+. . +. .+++|++.+++
T Consensus 60 ~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~---~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~ 136 (308)
T PRK14619 60 VRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQA---AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAA 136 (308)
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHH---HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHH
Confidence 99999888774 778999999987 444433334444433 35566763 4443332 2 23 78889999999
Q ss_pred HHHHHHHHHHhcccCCCCcEEEeCC-----------------cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 010702 156 NNIRDILQKVAAQVDDGPCVTYIGE-----------------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (503)
Q Consensus 156 ~~v~~ll~~ig~~~~~~~~v~~~G~-----------------~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 218 (503)
++++++|+..+ ..+++.++ .|.+...|+.+|......++++.|++.++++.| ++++
T Consensus 137 ~~v~~ll~~~~------~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G-~~~~ 209 (308)
T PRK14619 137 ETVQQIFSSER------FRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLG-AQTE 209 (308)
T ss_pred HHHHHHhCCCc------EEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-CCcc
Confidence 99999999888 45664444 233455669999999999999999999999999 9998
Q ss_pred HHHHHHHHhccCCcchhHHhhhhhhccccccCCCchh------HHHHHhhcCCcchH----HHHHHHHHHcCCCcchHHH
Q 010702 219 ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGEL------VDKILDKTGMKGTG----KWTVQQAAELSVAAPTIAA 288 (503)
Q Consensus 219 ~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~------ld~i~~~~~~kgtG----~~~~~~A~~~gvp~p~~~~ 288 (503)
.+.++ .|.+++++. ...... ++|..+|. ++.+.+.+.+..+| +.+.+.+.++|+++|++.+
T Consensus 210 t~~~~-----~g~gd~~~t---~~~~~~-rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~ 280 (308)
T PRK14619 210 TFYGL-----SGLGDLLAT---CTSPLS-RNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQ 280 (308)
T ss_pred ccccc-----cchhhhhee---ecCCCC-ccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88764 245554441 111111 22333333 33334444433333 3677899999999999986
Q ss_pred HHHHHHHhcchHHHHHHHHHhc
Q 010702 289 SLDCRYLSGLKEEREKAAKVLK 310 (503)
Q Consensus 289 Av~~r~~s~~~~~r~~~~~~~~ 310 (503)
+ .+.+...++.+.....++.
T Consensus 281 v--~~i~~~~~~~~~~~~~l~~ 300 (308)
T PRK14619 281 V--YRLLQGEITPQQALEELME 300 (308)
T ss_pred H--HHHHcCCCCHHHHHHHHHc
Confidence 4 4556666677777777664
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-22 Score=195.22 Aligned_cols=122 Identities=10% Similarity=0.147 Sum_probs=112.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcch
Q 010702 324 HVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVD 403 (503)
Q Consensus 324 ~~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~ 403 (503)
++++|||||||||||||++||.++|.|++|+.+.+..+ .++++++.-||.| ++.|+|+++++++|+-+++....|+|
T Consensus 179 ~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~--~eia~vF~~WN~g-eleSfLieIT~dIlk~~d~~G~~lv~ 255 (487)
T KOG2653|consen 179 EGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSN--DEIAEVFDDWNKG-ELESFLIEITADILKFKDEDGKPLVD 255 (487)
T ss_pred CCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcH--HHHHHHHHhhccc-chhHHHHHHhHHHhheeccCCChHHH
Confidence 56899999999999999999999999999998776665 7888888889999 99999999999999876666678999
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
.+.+.+.||++| +|+|+.|+++|+|+|+|.+|++ ++++.+.+|..
T Consensus 256 kI~D~aGqKGTG--kwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ 302 (487)
T KOG2653|consen 256 KILDKAGQKGTG--KWTVISALELGVPVTLIGEAVFARCLSALKDERVR 302 (487)
T ss_pred HHHhhhcCCCcc--HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999 89999988864
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=183.01 Aligned_cols=200 Identities=11% Similarity=0.059 Sum_probs=159.2
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChhHH-----HHHHHhhcccCCCCeeeeC
Q 010702 7 SRIGLAGLAVM--------------------GQNLALNVAEKGFPISVYNRTTSKV-----DETLDRAHREGQLPLTGHY 61 (503)
Q Consensus 7 ~~IgIIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~-----~~l~~~~~~~g~~~i~~~~ 61 (503)
|||.|+|+|+- |.+||.+|+++||+|++|||+++.. +.+.+. ++..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~-------Gi~~as 73 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDA-------GVKVVS 73 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHC-------CCEEeC
Confidence 57888888864 7889999999999999999998743 333332 356778
Q ss_pred CHHHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhH-HHHHHHHH----hcCccEec-ccCCC
Q 010702 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEAS----QKGLLYLG-MGVSG 135 (503)
Q Consensus 62 s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t-~~~~~~l~----~~gi~~i~-~pvsg 135 (503)
++.+++++ +|+||+|+|.+..+++++.++.+.++++.+|||+||+.+... +.+.+.+. ..|+++.+ +++.|
T Consensus 74 d~~eaa~~---ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~G 150 (342)
T PRK12557 74 DDAEAAKH---GEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPG 150 (342)
T ss_pred CHHHHHhC---CCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccc
Confidence 88888877 999999999976689999999999999999999999988876 45555554 33665653 45555
Q ss_pred Chhhhh----cCC-cccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010702 136 GEEGAR----HGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (503)
Q Consensus 136 g~~~a~----~G~-~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~ 210 (503)
++.+.. .|+ +...+++++.+++++++|+.+| .++++++ .|.++.+|+++|.+....++.++|++.+++
T Consensus 151 ae~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G------~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~ 223 (342)
T PRK12557 151 TPQHGHYVIAGKTTNGTELATEEQIEKCVELAESIG------KEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGT 223 (342)
T ss_pred cccchheEEeCCCcccccCCCHHHHHHHHHHHHHcC------CEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543322 112 2333459999999999999999 7787777 599999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHH
Q 010702 211 HVGGLSNAELAEIF 224 (503)
Q Consensus 211 ~~g~~~~~~i~~~~ 224 (503)
+.| .+++++.+-+
T Consensus 224 ~~~-~~p~~~~~~~ 236 (342)
T PRK12557 224 KII-KAPKEMIEKQ 236 (342)
T ss_pred HhC-CCHHHHHHHH
Confidence 999 8888876654
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-20 Score=171.69 Aligned_cols=197 Identities=32% Similarity=0.505 Sum_probs=144.2
Q ss_pred HHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcC
Q 010702 64 RDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHG 143 (503)
Q Consensus 64 ~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G 143 (503)
+++..-|+.-|+||---.+ .-++.+..-.....+|--++|++|+--..- .++|..| +.||++.+...
T Consensus 78 ~~la~~L~~GDivIDGGNS--~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G-------~~~G~~l----MiGG~~~a~~~ 144 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNS--NYKDSLRRAKLLAEKGIHFLDVGTSGGVWG-------AERGYCL----MIGGDEEAVER 144 (300)
T ss_pred HHHHhhcCCCCEEEECCcc--chHHHHHHHHHHHhcCCeEEeccCCCCchh-------hhcCceE----EecCcHHHHHH
Confidence 4455555667988876543 456666555555568889999998753221 2335443 45666554332
Q ss_pred CcccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCC--HHHHH
Q 010702 144 PSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLS--NAELA 221 (503)
Q Consensus 144 ~~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~--~~~i~ 221 (503)
- +..++.+.+ ..-| ..|+|+.|+|||+|||||+|+|++||+++|.+.++++.- .| .+++.
T Consensus 145 ~-------~pif~~lA~--ge~G--------yl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~-fD~D~~~VA 206 (300)
T COG1023 145 L-------EPIFKALAP--GEDG--------YLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSP-FDYDLEAVA 206 (300)
T ss_pred H-------HHHHHhhCc--CcCc--------cccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCC-CCCCHHHHH
Confidence 1 111221111 0334 789999999999999999999999999999999999865 54 55555
Q ss_pred HHHHHhccCC-cchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchH
Q 010702 222 EIFDEWNKGE-LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300 (503)
Q Consensus 222 ~~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~ 300 (503)
++ ||.|+ .+|||++.+...+++ + .-++.+.+.+...|+|||++++|.++|||+|+|+.|+..||.|...+
T Consensus 207 ~v---W~hGSVIrSWLldLt~~Af~~-d-----~~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~d 277 (300)
T COG1023 207 EV---WNHGSVIRSWLLDLTAEAFKK-D-----PDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDD 277 (300)
T ss_pred HH---HhCcchHHHHHHHHHHHHHhh-C-----CCHHHhcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccchh
Confidence 54 88865 689999999988874 2 26789999999999999999999999999999999999999997553
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-19 Score=190.10 Aligned_cols=195 Identities=14% Similarity=0.143 Sum_probs=151.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhc
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLS 69 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~i~~~~s~~e~~~~ 69 (503)
+.++|||||+|.||.+||.+|+++|++|++||+++++.+.+.+.. ...+ +++.++++++++++
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g--~i~~~~~~~ea~~~ 80 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEG--RLTFCASLAEAVAG 80 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhh--ceEeeCCHHHHhcC
Confidence 346899999999999999999999999999999999877653210 0000 36778889888877
Q ss_pred cCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-ccc
Q 010702 70 IQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLM 147 (503)
Q Consensus 70 l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~ 147 (503)
+|+|++++|+..++++.+ .++.+.++++ .||++||+.+..+ .+.+.+..++..++++|+... ..++ ..+
T Consensus 81 ---aD~Vieavpe~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvev 151 (495)
T PRK07531 81 ---ADWIQESVPERLDLKRRVLAEIDAAARPD-ALIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVEL 151 (495)
T ss_pred ---CCEEEEcCcCCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEE
Confidence 999999999988777754 6777766665 4667777766544 566667777778888887632 3445 667
Q ss_pred CCCC---HHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHH
Q 010702 148 PGGS---FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQL-ISEAYDVLKHVGGLSNAELAEI 223 (503)
Q Consensus 148 ~gg~---~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~-~~Ea~~l~~~~g~~~~~~i~~~ 223 (503)
++|+ ++++++++++|+.+| +.+++++. .++|.+...+++. ++|++.|+++.| +++++++++
T Consensus 152 v~g~~t~~e~~~~~~~~~~~lG------~~~v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~-~s~~~id~~ 216 (495)
T PRK07531 152 VGGGKTSPETIRRAKEILREIG------MKPVHIAK--------EIDAFVGDRLLEALWREALWLVKDGI-ATTEEIDDV 216 (495)
T ss_pred cCCCCCCHHHHHHHHHHHHHcC------CEEEeecC--------CCcchhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 7775 799999999999999 88999874 4555555555666 499999999998 999999999
Q ss_pred HH
Q 010702 224 FD 225 (503)
Q Consensus 224 ~~ 225 (503)
+.
T Consensus 217 ~~ 218 (495)
T PRK07531 217 IR 218 (495)
T ss_pred Hh
Confidence 84
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=175.09 Aligned_cols=193 Identities=15% Similarity=0.165 Sum_probs=146.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-------hcccCCC----------CeeeeCCHHHHHhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQL----------PLTGHYTPRDFVLS 69 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~~----------~i~~~~s~~e~~~~ 69 (503)
++|+|||+|.||.++|.+|+++|++|++||+++++++++.+. +...+.. +++.+.++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 479999999999999999999999999999999988776431 1110000 25567788887776
Q ss_pred cCCCcEEEEecCCChhHHHH-HHHHHhcCCCCCEE-EecCCCChhhHHHHHHHHH-hcCccEecccCCCChhhhhcCC-c
Q 010702 70 IQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCI-IDGGNEWYLNTERRIHEAS-QKGLLYLGMGVSGGEEGARHGP-S 145 (503)
Q Consensus 70 l~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iI-Id~st~~~~~t~~~~~~l~-~~gi~~i~~pvsgg~~~a~~G~-~ 145 (503)
+|+||+|+|++.+++.. +.++.+.++++.+| +++||..+....+...... ..|+||+ .|++++ + .
T Consensus 82 ---aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lv 150 (288)
T PRK09260 82 ---ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLV 150 (288)
T ss_pred ---CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceE
Confidence 99999999998777655 47788888888876 6888877654433322211 2488899 788764 4 6
Q ss_pred ccCCC---CHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010702 146 LMPGG---SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (503)
Q Consensus 146 i~~gg---~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 222 (503)
.|++| +++++++++++++.++ +.++++++ ..|. +.|.+.+ .+++|++.++++.. .++++++.
T Consensus 151 e~v~g~~t~~~~~~~~~~~l~~lg------~~~v~v~d-~~Gf----~~nRl~~---~~~~ea~~~~~~gv-~~~~~iD~ 215 (288)
T PRK09260 151 ELIRGLETSDETVQVAKEVAEQMG------KETVVVNE-FPGF----VTSRISA---LVGNEAFYMLQEGV-ATAEDIDK 215 (288)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcC------CeEEEecC-cccH----HHHHHHH---HHHHHHHHHHHcCC-CCHHHHHH
Confidence 67777 9999999999999999 88999985 3444 4466544 45699999999876 78999998
Q ss_pred HHH
Q 010702 223 IFD 225 (503)
Q Consensus 223 ~~~ 225 (503)
++.
T Consensus 216 ~~~ 218 (288)
T PRK09260 216 AIR 218 (288)
T ss_pred HHH
Confidence 863
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-18 Score=170.14 Aligned_cols=207 Identities=19% Similarity=0.211 Sum_probs=165.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhc
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLS 69 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~i~~~~s~~e~~~~ 69 (503)
+.++|||||||.+|.++|..++++|++|.++|.++.+++.+.... ...| +++.+++++++..
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g--~lraTtd~~~l~~- 84 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESG--KLRATTDPEELKE- 84 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcC--CceEecChhhccc-
Confidence 447899999999999999999999999999999999988765321 1111 4566667766553
Q ss_pred cCCCcEEEEecCCCh---------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc--CccE-ecccCCCCh
Q 010702 70 IQRPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLY-LGMGVSGGE 137 (503)
Q Consensus 70 l~~~dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~-i~~pvsgg~ 137 (503)
||++|+|||++. .+.+..+.+.+.|++|++||--||+.|.+|+++...+.+. |..| .|..+.-.|
T Consensus 85 ---~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysP 161 (436)
T COG0677 85 ---CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSP 161 (436)
T ss_pred ---CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCc
Confidence 999999998752 4667778999999999999999999999999999987664 3433 233233333
Q ss_pred hhhhcCC---------cccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHH
Q 010702 138 EGARHGP---------SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDV 208 (503)
Q Consensus 138 ~~a~~G~---------~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l 208 (503)
+....|. -++.|-++++.+.+..+++.+- ..+..+.+.-.+.++|+..|.+...++++++|..-+
T Consensus 162 ERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv------~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali 235 (436)
T COG0677 162 ERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIV------EGVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235 (436)
T ss_pred cccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHhe------EEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3333332 3445557888899999999998 668888889999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHH
Q 010702 209 LKHVGGLSNAELAEIF 224 (503)
Q Consensus 209 ~~~~g~~~~~~i~~~~ 224 (503)
+++.| ++..++.++.
T Consensus 236 ~~~~G-IdvwevIeaA 250 (436)
T COG0677 236 CNAMG-IDVWEVIEAA 250 (436)
T ss_pred HHHhC-CcHHHHHHHh
Confidence 99999 9999888875
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-17 Score=164.20 Aligned_cols=235 Identities=15% Similarity=0.120 Sum_probs=165.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEE-eCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVY-NRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~----~V~v~-dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|||||||+|.||.+|+++|.++|+ +|++| ||++++.+.+.+.+ +..+.++.+++++ +|+||+|+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g-------~~~~~~~~e~~~~---aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLG-------VKTAASNTEVVKS---SDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcC-------CEEeCChHHHHhc---CCEEEEEEC
Confidence 589999999999999999999998 89999 99999988776543 5667888888877 999999997
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChhhhhcCC-cccCCCCHHHHHHHH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPGGSFEAYNNIR 159 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~ 159 (503)
+ ..+++++.++.+.+.++++||+..++.... .+.+.+.. . +++. +|..+...+..... +...+++++.++.++
T Consensus 71 ~-~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~--~l~~~~~~-~-~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 145 (266)
T PLN02688 71 P-QVVKDVLTELRPLLSKDKLLVSVAAGITLA--DLQEWAGG-R-RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVA 145 (266)
T ss_pred c-HHHHHHHHHHHhhcCCCCEEEEecCCCcHH--HHHHHcCC-C-CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHH
Confidence 5 689999999988888899988875554332 22232222 1 5664 67666554433333 334556899999999
Q ss_pred HHHHHHhcccCCCCcEEEeC---------CcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccC
Q 010702 160 DILQKVAAQVDDGPCVTYIG---------EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKG 230 (503)
Q Consensus 160 ~ll~~ig~~~~~~~~v~~~G---------~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g 230 (503)
++|+.+| . +++++ ..|+|.. +.+.+++.+.|+ +.+.| +++++..+++.+ +
T Consensus 146 ~l~~~~G------~-~~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~G-l~~~~a~~~~~~---~ 204 (266)
T PLN02688 146 TLFGAVG------K-IWVVDEKLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAG-LPRDVALSLAAQ---T 204 (266)
T ss_pred HHHHhCC------C-EEEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH---H
Confidence 9999999 6 77764 3466554 356678888888 67788 999999998743 2
Q ss_pred CcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHH
Q 010702 231 ELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIA 287 (503)
Q Consensus 231 ~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~ 287 (503)
...++.+ +...+ ..+ -+.+......-||..-.+....+.|++-.++.
T Consensus 205 ~~gs~~l------~~~~~-~~~---~~l~~~v~spgG~t~~~l~~l~~~g~~~~~~~ 251 (266)
T PLN02688 205 VLGAAKM------VLETG-KHP---GQLKDMVTSPGGTTIAGVHELEKGGFRAALMN 251 (266)
T ss_pred HHHHHHH------HHhcC-CCH---HHHHHhCCCCchHHHHHHHHHHHCChHHHHHH
Confidence 2222221 22111 222 22333344455676667777778888866555
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-18 Score=180.38 Aligned_cols=188 Identities=14% Similarity=0.159 Sum_probs=145.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHH-----------HHhhcccC------CCCeeeeCCHHHHHhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDET-----------LDRAHREG------QLPLTGHYTPRDFVLS 69 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~~~~~g------~~~i~~~~s~~e~~~~ 69 (503)
.+|||||+|.||.+||.+|+.+||+|++||++++.+++. .+.+.-.. --+++.+.+++++. +
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~-~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLA-D 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhC-C
Confidence 579999999999999999999999999999999988774 22221000 00367788887654 4
Q ss_pred cCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEE-ecCCCChhhHHHHHHHHH--h--cCccEec-ccCCCChhhhhc
Q 010702 70 IQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCII-DGGNEWYLNTERRIHEAS--Q--KGLLYLG-MGVSGGEEGARH 142 (503)
Q Consensus 70 l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iII-d~st~~~~~t~~~~~~l~--~--~gi~~i~-~pvsgg~~~a~~ 142 (503)
||+||.|||++.++++.+ .++...++++.++. ++||..+. +++..+. + .|+||++ +|++.
T Consensus 87 ---aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~~------- 153 (507)
T PRK08268 87 ---CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLMK------- 153 (507)
T ss_pred ---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccCe-------
Confidence 999999999999999887 56666677888884 77777664 3444433 2 3899999 77772
Q ss_pred CCcccCC---CCHHHHHHHHHHHHHHhcccCCCCcEEEeCC-cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 010702 143 GPSLMPG---GSFEAYNNIRDILQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (503)
Q Consensus 143 G~~i~~g---g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~-~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 218 (503)
-..+++ +++++++++.++++.++ +.++++++ .| ++.|.+.. ..++|++.++++.+ ++++
T Consensus 154 -LvEvv~g~~Ts~~~~~~~~~l~~~lg------k~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~-~~~~ 216 (507)
T PRK08268 154 -LVEVVSGLATDPAVADALYALARAWG------KTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGV-ADPA 216 (507)
T ss_pred -eEEEeCCCCCCHHHHHHHHHHHHHcC------CceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCC-CCHH
Confidence 234454 59999999999999999 88999986 45 46676654 47799999999988 9999
Q ss_pred HHHHHHH
Q 010702 219 ELAEIFD 225 (503)
Q Consensus 219 ~i~~~~~ 225 (503)
++++++.
T Consensus 217 ~iD~al~ 223 (507)
T PRK08268 217 TIDAILR 223 (507)
T ss_pred HHHHHHH
Confidence 9999984
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=170.66 Aligned_cols=262 Identities=19% Similarity=0.168 Sum_probs=165.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCC---C-------CeeeeCCHHHHHhccCCCc
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ---L-------PLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~---~-------~i~~~~s~~e~~~~l~~~d 74 (503)
|||||+|||+|.||..+|..|+++||+|++|+|++. .+.+.+.+..... . ++....+. +.+. .+|
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~D 75 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA---TAD 75 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhcc---CCC
Confidence 567999999999999999999999999999999754 4555543321000 0 11223344 3334 399
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc--c---CCCChhhhh---cCCcc
Q 010702 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM--G---VSGGEEGAR---HGPSL 146 (503)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~--p---vsgg~~~a~---~G~~i 146 (503)
+||++||.. .+.++++.+.+.+.++++|++++|+.. ..+.+.+.+.+. +++++ + +++++..+. .|+ +
T Consensus 76 ~vil~vk~~-~~~~~~~~l~~~~~~~~iii~~~nG~~-~~~~l~~~~~~~--~~~~g~~~~~~~~~~pg~~~~~~~g~-l 150 (341)
T PRK08229 76 LVLVTVKSA-ATADAAAALAGHARPGAVVVSFQNGVR-NADVLRAALPGA--TVLAGMVPFNVISRGPGAFHQGTSGA-L 150 (341)
T ss_pred EEEEEecCc-chHHHHHHHHhhCCCCCEEEEeCCCCC-cHHHHHHhCCCC--cEEEEEEEEEEEecCCceEEecCCCc-e
Confidence 999999986 678899999999999999999987653 344455554432 23332 2 233332222 333 2
Q ss_pred cCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHH--------------------HHHHHHHH
Q 010702 147 MPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGD--------------------MQLISEAY 206 (503)
Q Consensus 147 ~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~--------------------~~~~~Ea~ 206 (503)
..+ +.+.++++.++|+..+ ..+.+.++.+.+.+.|++.|.+.... ..++.|++
T Consensus 151 ~~~-~~~~~~~~~~~l~~~g------~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~ 223 (341)
T PRK08229 151 AIE-ASPALRPFAAAFARAG------LPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREAL 223 (341)
T ss_pred Eec-CCchHHHHHHHHHhcC------CCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHH
Confidence 222 2355688999999888 67889999999999999999643333 37899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHhccC--CcchhHHhhhhhhccccccCCCchhHHHHHhhcCCc-------chHHHHHHHHH
Q 010702 207 DVLKHVGGLSNAELAEIFDEWNKG--ELESFLVEITADIFKVKDEYGEGELVDKILDKTGMK-------GTGKWTVQQAA 277 (503)
Q Consensus 207 ~l~~~~g~~~~~~i~~~~~~~~~g--~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~k-------gtG~~~~~~A~ 277 (503)
.++++.| ++++.+.++..++... .+.+++++.....+...+ +... ..+.+|.... =.| +.++.|+
T Consensus 224 ~va~a~G-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~Sm~~D~~~~r~tEi~~i~G-~i~~~a~ 297 (341)
T PRK08229 224 RVLKAAG-IRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAID-PLAR---SSMSDDLAAGRATEIDWING-EIVRLAG 297 (341)
T ss_pred HHHHHcC-CCccccCCCChhhhhhhhcCChHHHHHHHHHhhccC-CccC---chHHHHHHcCCcchHHHHhh-HHHHHHH
Confidence 9999999 9876543332211100 122333333222221111 1110 1122222100 012 6889999
Q ss_pred HcCCCcchHHHH
Q 010702 278 ELSVAAPTIAAS 289 (503)
Q Consensus 278 ~~gvp~p~~~~A 289 (503)
++|+|+|+...+
T Consensus 298 ~~gv~~P~~~~~ 309 (341)
T PRK08229 298 RLGAPAPVNARL 309 (341)
T ss_pred HcCCCCcHHHHH
Confidence 999999998865
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=166.58 Aligned_cols=200 Identities=16% Similarity=0.153 Sum_probs=149.6
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHH-----------HHHhhcccCC------CCeeeeCCH
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDE-----------TLDRAHREGQ------LPLTGHYTP 63 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~-----------l~~~~~~~g~------~~i~~~~s~ 63 (503)
|+..+ .+|||||+|.||.+||..|+.+|++|++||++++.++. +.+.+..... -+++.++++
T Consensus 1 ~~~~~-~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~ 79 (286)
T PRK07819 1 MSDAI-QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL 79 (286)
T ss_pred CCCCc-cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH
Confidence 44443 48999999999999999999999999999999998776 2222211000 045577787
Q ss_pred HHHHhccCCCcEEEEecCCChhHHHHH-HHHHhcC-CCCCEEEecCCCChhhHHHHHHHHHhc--CccEec-ccCCCChh
Q 010702 64 RDFVLSIQRPRSVIILVKAGSPVDQTI-AALSEHM-SPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLG-MGVSGGEE 138 (503)
Q Consensus 64 ~e~~~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l-~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~i~-~pvsgg~~ 138 (503)
++ +++ +|+||.|+|++.+++..+ ..+...+ +++.++++.|++.+..........+++ |+||++ +|+++..+
T Consensus 80 ~~-~~~---~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvE 155 (286)
T PRK07819 80 GD-FAD---RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVE 155 (286)
T ss_pred HH-hCC---CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEE
Confidence 54 455 999999999999999887 4455555 789999998888877666554444555 889998 56776553
Q ss_pred hhhcCCcccCCCCHHHHHHHHHHHH-HHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 010702 139 GARHGPSLMPGGSFEAYNNIRDILQ-KVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (503)
Q Consensus 139 ~a~~G~~i~~gg~~~a~~~v~~ll~-~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~ 217 (503)
- ....++++++++++.+++. .++ +.++.+++ ..|.. -|.+ ....++|++.++++.. .++
T Consensus 156 l-----v~~~~T~~~~~~~~~~~~~~~lg------k~pv~v~d-~pGfi----~nRi---~~~~~~Ea~~ll~eGv-~~~ 215 (286)
T PRK07819 156 L-----VPTLVTSEATVARAEEFASDVLG------KQVVRAQD-RSGFV----VNAL---LVPYLLSAIRMVESGF-ATA 215 (286)
T ss_pred E-----eCCCCCCHHHHHHHHHHHHHhCC------CCceEecC-CCChH----HHHH---HHHHHHHHHHHHHhCC-CCH
Confidence 2 3446789999999999988 599 78888865 44544 4555 4455699999999876 789
Q ss_pred HHHHHHHH
Q 010702 218 AELAEIFD 225 (503)
Q Consensus 218 ~~i~~~~~ 225 (503)
++++.++.
T Consensus 216 ~dID~~~~ 223 (286)
T PRK07819 216 EDIDKAMV 223 (286)
T ss_pred HHHHHHHH
Confidence 99999873
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=166.73 Aligned_cols=184 Identities=14% Similarity=0.190 Sum_probs=132.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChh-HHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|||+|||+|.||.+|+.+|.++| ++|.+|||+++ +.+.+.... ++....++.++++. +|+||+|||
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDvVilav~ 74 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY------GVKGTHNKKELLTD---ANILFLAMK 74 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc------CceEeCCHHHHHhc---CCEEEEEeC
Confidence 58999999999999999999998 78999999864 556665431 24567788888776 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEec-CCCChhhHHHHHHHHHhcCccEecccCCCC---hhhhhcC-CcccCCCC---HH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLYLGMGVSGG---EEGARHG-PSLMPGGS---FE 153 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~-st~~~~~t~~~~~~l~~~gi~~i~~pvsgg---~~~a~~G-~~i~~gg~---~~ 153 (503)
+. .+.+++.++.+.+.++++||++ ++..+...++ .+ ..+ +|++++ ...+..+ .+++++++ ++
T Consensus 75 p~-~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~-~~~-----~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~ 144 (279)
T PRK07679 75 PK-DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LL-QKD-----VPIIRAMPNTSAAILKSATAISPSKHATAE 144 (279)
T ss_pred HH-HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---Hc-CCC-----CeEEEECCCHHHHHhcccEEEeeCCCCCHH
Confidence 85 7888899998888889999997 5554443333 22 222 344444 2344433 47776765 67
Q ss_pred HHHHHHHHHHHHhcccCCCCcEE------E--eCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010702 154 AYNNIRDILQKVAAQVDDGPCVT------Y--IGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (503)
Q Consensus 154 a~~~v~~ll~~ig~~~~~~~~v~------~--~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 225 (503)
.++.++++|+.+| .++. + ++..|+|... .+..+..+.|+ +.+.| ++.++..+++.
T Consensus 145 ~~~~v~~l~~~~G------~~~~v~e~~~~~~~a~~Gsgpa~-------~~~~~eal~e~---~~~~G-l~~~~a~~~~~ 207 (279)
T PRK07679 145 HIQTAKALFETIG------LVSVVEEEDMHAVTALSGSGPAY-------IYYVVEAMEKA---AKKIG-LKEDVAKSLIL 207 (279)
T ss_pred HHHHHHHHHHhCC------cEEEeCHHHhhhHHHhhcCHHHH-------HHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 8899999999999 5444 4 5666666552 23334444444 77888 99999999985
Q ss_pred H
Q 010702 226 E 226 (503)
Q Consensus 226 ~ 226 (503)
+
T Consensus 208 ~ 208 (279)
T PRK07679 208 Q 208 (279)
T ss_pred H
Confidence 4
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=169.56 Aligned_cols=254 Identities=12% Similarity=0.072 Sum_probs=181.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhcc---cC---------CCCeeeeCCHHHHHhccC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHR---EG---------QLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~---~g---------~~~i~~~~s~~e~~~~l~ 71 (503)
||+|+|||+|.+|..+|..|+++| ++|+++|+++++++.+.+.... .+ ..++..+++..+.+..
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~-- 78 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE-- 78 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc--
Confidence 479999999999999999999885 7899999999999887643210 00 0025667777777766
Q ss_pred CCcEEEEecCCCh--------------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc--C--ccEecccC
Q 010702 72 RPRSVIILVKAGS--------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--G--LLYLGMGV 133 (503)
Q Consensus 72 ~~dvIil~vp~~~--------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--g--i~~i~~pv 133 (503)
+|++|+|||++. .++++++.+.+.++++++||..||..+.+++++...+.+. | ++..-+|-
T Consensus 79 -advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 79 -ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred -CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 999999997543 5778889999999999999999999999999998877753 3 33444553
Q ss_pred CCChhhhh----cCCcccCCCC-----HHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHH
Q 010702 134 SGGEEGAR----HGPSLMPGGS-----FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISE 204 (503)
Q Consensus 134 sgg~~~a~----~G~~i~~gg~-----~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~E 204 (503)
.=.+-.+. +-+.+++||. +++.+++++++..+.. ..++.+.+.-.+.++|++.|.+.+..+++++|
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~-----~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NE 232 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVP-----EERIITTNLWSAELSKLAANAFLAQRISSVNA 232 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhc-----CCCEEecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32221111 2225666873 3467888889888861 13555667789999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhccCC--cchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCC
Q 010702 205 AYDVLKHVGGLSNAELAEIFDEWNKGE--LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVA 282 (503)
Q Consensus 205 a~~l~~~~g~~~~~~i~~~~~~~~~g~--~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp 282 (503)
...+|++.| +|..++.+.+. ... +..|+ ...-.+++. -+-+|.. ..+..|.++|++
T Consensus 233 la~lce~~g-iD~~eV~~~~~---~d~rig~~~l--------~PG~G~GG~----ClpkD~~------~L~~~a~~~g~~ 290 (473)
T PLN02353 233 MSALCEATG-ADVSQVSHAVG---KDSRIGPKFL--------NASVGFGGS----CFQKDIL------NLVYICECNGLP 290 (473)
T ss_pred HHHHHHHhC-CCHHHHHHHhC---CCCcCCCCCC--------CCCCCCCCc----chhhhHH------HHHHHHHHcCCc
Confidence 999999999 99999888862 211 11222 111113232 3345542 455678889988
Q ss_pred --cchHHHH
Q 010702 283 --APTIAAS 289 (503)
Q Consensus 283 --~p~~~~A 289 (503)
.+++.++
T Consensus 291 ~~~~l~~~~ 299 (473)
T PLN02353 291 EVAEYWKQV 299 (473)
T ss_pred hHHHHHHHH
Confidence 6666654
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-16 Score=159.17 Aligned_cols=254 Identities=17% Similarity=0.153 Sum_probs=187.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh---------------hcccCCCCeeeeCCHHHHHhccC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR---------------AHREGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~---------------~~~~g~~~i~~~~s~~e~~~~l~ 71 (503)
|||+|||+|++|...+..|++.||+|..+|.++++++.+.+. ....| +++.+++.++++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~g--Rl~fTtd~~~a~~~-- 76 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASG--RLRFTTDYEEAVKD-- 76 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccC--cEEEEcCHHHHHhc--
Confidence 689999999999999999999999999999999998776532 11111 48888999998887
Q ss_pred CCcEEEEecCCCh---------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhc
Q 010702 72 RPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARH 142 (503)
Q Consensus 72 ~~dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~ 142 (503)
+|++|+|||++. .++.+++.+.+.++...+||.-||+.+.+++++.+.+.+....- +..|...|+-.|+
T Consensus 77 -adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLRE 154 (414)
T COG1004 77 -ADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLRE 154 (414)
T ss_pred -CCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcC
Confidence 999999998763 47788899999998879999999999999999988776542110 3334445555555
Q ss_pred C--------C-cccCCCCH-HHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 010702 143 G--------P-SLMPGGSF-EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV 212 (503)
Q Consensus 143 G--------~-~i~~gg~~-~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~ 212 (503)
| | .+++|... ++.+.+++++..+..+ ...+..-..-.+.++|+..|++.+.-+..++|.-.+|++.
T Consensus 155 G~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~----~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~ 230 (414)
T COG1004 155 GSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQ----DVPILFTDLREAELIKYAANAFLATKISFINEIANICEKV 230 (414)
T ss_pred cchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhc----CCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 3 56778755 4678888888776431 3344444558899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHH
Q 010702 213 GGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASL 290 (503)
Q Consensus 213 g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av 290 (503)
| +|.+++.+.+. ....-+..| +...-.|++... -||.. ..+..|.++|.+.+++.+.+
T Consensus 231 g-~D~~~V~~gIG-lD~RIG~~f--------l~aG~GyGGsCf----PKD~~------AL~~~a~~~~~~~~ll~avv 288 (414)
T COG1004 231 G-ADVKQVAEGIG-LDPRIGNHF--------LNAGFGYGGSCF----PKDTK------ALIANAEELGYDPNLLEAVV 288 (414)
T ss_pred C-CCHHHHHHHcC-CCchhhHhh--------CCCCCCCCCcCC----cHhHH------HHHHHHHhcCCchHHHHHHH
Confidence 9 99999988862 111111222 222112443322 23332 45678899999988888654
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=5e-18 Score=171.09 Aligned_cols=133 Identities=26% Similarity=0.437 Sum_probs=113.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchh
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~ 404 (503)
.+.++++|+++|.+.++.+++++|++.|.+++. |++|+++++++|+.||+++|++++...+.+.+++...
T Consensus 165 ~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g----~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~------ 234 (299)
T PRK12490 165 VGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSD----FDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLA------ 234 (299)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----cCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCChh------
Confidence 378999999999999999999999999999764 9999999999999999999999999888886543211
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcc-hhHHHhhhhhcCCccccc
Q 010702 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLP-ANLVQAQRDLFGAHTYER 468 (503)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~-~~~iqa~rd~fG~H~~~r 468 (503)
.+ +...|-.+..+|++..|.+.|+|+|.++++++|+.....+++| .+.+|+||||||+|+|+.
T Consensus 235 ~l-~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~~~~~~~ 298 (299)
T PRK12490 235 GI-KGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGGHAVKT 298 (299)
T ss_pred hh-hHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhCCCCCCC
Confidence 12 2222333334889999999999999999999998889999999 999999999999999974
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-17 Score=175.40 Aligned_cols=190 Identities=16% Similarity=0.163 Sum_probs=142.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-------hcccCCC----------CeeeeCCHHHHHh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQL----------PLTGHYTPRDFVL 68 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~~----------~i~~~~s~~e~~~ 68 (503)
.++|||||+|.||.+||.+|+.+||+|++||++++.+++..+. ....|.+ +++.+.+++++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~- 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA- 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC-
Confidence 3589999999999999999999999999999999987653211 0111100 366788887653
Q ss_pred ccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHH----hcCccEec-ccCCCChhhhhc
Q 010702 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS----QKGLLYLG-MGVSGGEEGARH 142 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~----~~gi~~i~-~pvsgg~~~a~~ 142 (503)
+ ||+||.|||++.++++.+ .++...++++.+|. ++|+....+ ++++.+. ..|.||++ +|++.
T Consensus 84 ~---aDlVIEav~E~~~vK~~vf~~l~~~~~~~~Ila-snTStl~i~-~iA~~~~~p~r~~G~HFf~Papv~~------- 151 (503)
T TIGR02279 84 D---AGLVIEAIVENLEVKKALFAQLEELCPADTIIA-SNTSSLSIT-AIAAGLARPERVAGLHFFNPAPVMA------- 151 (503)
T ss_pred C---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE-ECCCCCCHH-HHHHhcCcccceEEEeccCccccCc-------
Confidence 4 999999999999998886 55666666665554 333333333 3444443 35899999 67773
Q ss_pred CCcccCCC---CHHHHHHHHHHHHHHhcccCCCCcEEEeCC-cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 010702 143 GPSLMPGG---SFEAYNNIRDILQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (503)
Q Consensus 143 G~~i~~gg---~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~-~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 218 (503)
-..+++| ++++++.+.++++.+| +.++++|+ +| ++.|.+. ...++|++.++++.+ ++++
T Consensus 152 -LvEvv~g~~Ts~e~~~~~~~l~~~lg------k~pv~v~d~pG------fi~Nrl~---~~~~~EA~~l~e~g~-a~~~ 214 (503)
T TIGR02279 152 -LVEVVSGLATAAEVAEQLYETALAWG------KQPVHCHSTPG------FIVNRVA---RPYYAEALRALEEQV-AAPA 214 (503)
T ss_pred -eEEEeCCCCCCHHHHHHHHHHHHHcC------CeeeEeCCCCC------cHHHHHH---HHHHHHHHHHHHcCC-CCHH
Confidence 2456777 9999999999999999 88999986 44 2556665 357899999999988 9999
Q ss_pred HHHHHHH
Q 010702 219 ELAEIFD 225 (503)
Q Consensus 219 ~i~~~~~ 225 (503)
++++++.
T Consensus 215 ~ID~al~ 221 (503)
T TIGR02279 215 VLDAALR 221 (503)
T ss_pred HHHHHHH
Confidence 9999985
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-17 Score=163.06 Aligned_cols=288 Identities=16% Similarity=0.188 Sum_probs=195.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCC-------CeeeeCCHHHHHhccCCCcEEEE
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL-------PLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~-------~i~~~~s~~e~~~~l~~~dvIil 78 (503)
+++|+|||.|.+|++||..|+++||+|.+|.|+++.++++.....+..++ ++...++++++++. +|+|++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~---ad~iv~ 77 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG---ADIIVI 77 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc---CCEEEE
Confidence 36899999999999999999999999999999999998887653222112 46678889999887 999999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHH-HHHhc-C---ccEecccCCCChhhhhcCC--cccCCCC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH-EASQK-G---LLYLGMGVSGGEEGARHGP--SLMPGGS 151 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~-~l~~~-g---i~~i~~pvsgg~~~a~~G~--~i~~gg~ 151 (503)
+||. ..+++++.++.+.+.++.+|+.++.+.-..+.++.. .+++. + +.++..|-. ..+-+..-| ..+.+-|
T Consensus 78 avPs-~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~-A~EVa~g~pta~~vas~d 155 (329)
T COG0240 78 AVPS-QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF-AKEVAQGLPTAVVVASND 155 (329)
T ss_pred ECCh-HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH-HHHHhcCCCcEEEEecCC
Confidence 9999 589999999988999999999999987665554433 33332 3 223333322 234444445 3445568
Q ss_pred HHHHHHHHHHHHHHhccc-----------CC-CCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010702 152 FEAYNNIRDILQKVAAQV-----------DD-GPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (503)
Q Consensus 152 ~~a~~~v~~ll~~ig~~~-----------~~-~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 219 (503)
++..++++.+|..=.-++ .+ -|+++.++. |....+.+..|+-...+...++|+.++....| -.+++
T Consensus 156 ~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~-Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG-~~~~T 233 (329)
T COG0240 156 QEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAA-GIADGLGLGDNAKAALITRGLAEMTRLGVALG-AKPET 233 (329)
T ss_pred HHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHH-HHHHHhhcChhHHHHHHHhHHHHHHHHHHHhC-CCcch
Confidence 888888888886522110 00 044444433 66666788899999999999999999999999 66775
Q ss_pred HHHHHHHhccCCcchhHHhhhhhhccccccC----CCchhHHHHHhhcCCcchHHHHH----HHHHHcCCCcchHHHHHH
Q 010702 220 LAEIFDEWNKGELESFLVEITADIFKVKDEY----GEGELVDKILDKTGMKGTGKWTV----QQAAELSVAAPTIAASLD 291 (503)
Q Consensus 220 i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~----~~~~~ld~i~~~~~~kgtG~~~~----~~A~~~gvp~p~~~~Av~ 291 (503)
+..+ .|.++ |+-++.....++..| ..+..++..+...+|..+|..++ +.|.++++++|++.+ |.
T Consensus 234 ~~gL-----sGlGD--LilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~-Vy 305 (329)
T COG0240 234 FMGL-----SGLGD--LILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEA-VY 305 (329)
T ss_pred hccc-----ccccc--eeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHH-HH
Confidence 5433 23323 222222221211111 22345667777778888886655 578889999999875 55
Q ss_pred HHHHhcchHHHHHHHHHh
Q 010702 292 CRYLSGLKEEREKAAKVL 309 (503)
Q Consensus 292 ~r~~s~~~~~r~~~~~~~ 309 (503)
|.+-..++.......++
T Consensus 306 -~vl~~~~~~~~~~~~L~ 322 (329)
T COG0240 306 -RVLYEGLDPKEAIEELM 322 (329)
T ss_pred -HHHhCCCCHHHHHHHHh
Confidence 44444455555554444
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=164.48 Aligned_cols=175 Identities=16% Similarity=0.223 Sum_probs=135.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|+|+|||+|.||.++|..|.++|++|.+||++++..+.+.+.+. +....+..+.+.+ +|+||+|+|.. .+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~------~~~~~~~~~~~~~---aDlVilavp~~-~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL------VDEASTDLSLLKD---CDLVILALPIG-LL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC------cccccCCHhHhcC---CCEEEEcCCHH-HH
Confidence 48999999999999999999999999999999998888776542 1222233344555 99999999985 67
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCCh-hhhhcCC-cccC----------CCCHH
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGE-EGARHGP-SLMP----------GGSFE 153 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~-~~a~~G~-~i~~----------gg~~~ 153 (503)
.++++++.+.+.++.+|+|+++......+... +....|++ .|+.|++ .+...+. .++. +++++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~----~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~ 146 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWE----KLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLN 146 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHH----HhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHH
Confidence 78889999999899999999988765443332 22345887 6999876 4444333 2222 36889
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHH
Q 010702 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQL 201 (503)
Q Consensus 154 a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~ 201 (503)
.++.++++++.+| .+++++++.+....++++.+...+....+
T Consensus 147 ~~~~v~~l~~~lG------~~~v~~~~~~hD~~~a~~shlp~~~a~~l 188 (279)
T PRK07417 147 ALAIVEELAVSLG------SKIYTADPEEHDRAVALISHLPVMVSAAL 188 (279)
T ss_pred HHHHHHHHHHHcC------CEEEEcCHHHHHHHHHHHcchHHHHHHHH
Confidence 9999999999999 78999999999999999988876555433
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-16 Score=159.96 Aligned_cols=193 Identities=11% Similarity=0.061 Sum_probs=141.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-----------hhcccCC--CCeeeeCCHHHHHhccCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-----------RAHREGQ--LPLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~~~~~g~--~~i~~~~s~~e~~~~l~~~ 73 (503)
.+|||||+|.||.+||.+|+.+|++|.+||++++..+.+.+ .+...+. -+++..+++++++++ |
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~---a 84 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD---A 84 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC---C
Confidence 57999999999999999999999999999999987655432 1100000 045677888888777 9
Q ss_pred cEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccC-CCChhhhhcCCccc
Q 010702 74 RSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGV-SGGEEGARHGPSLM 147 (503)
Q Consensus 74 dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pv-sgg~~~a~~G~~i~ 147 (503)
|+|+.++|+..+++..+ .++.+.++++. ||.+||+.. ...++.+.+... |.||+..|- ..-. -++
T Consensus 85 DlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l-~~s~la~~~~~p~R~~g~HffnP~~~~pLV-------EVv 155 (321)
T PRK07066 85 DFIQESAPEREALKLELHERISRAAKPDA-IIASSTSGL-LPTDFYARATHPERCVVGHPFNPVYLLPLV-------EVL 155 (321)
T ss_pred CEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCcc-CHHHHHHhcCCcccEEEEecCCccccCceE-------EEe
Confidence 99999999998888776 77878887776 666666643 444555555432 567776542 2111 133
Q ss_pred CC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010702 148 PG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (503)
Q Consensus 148 ~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 225 (503)
+| .++++++.+..+++.+| +.++.+..+-.|+. .|.+.+. ++.|++.++++.. .++++|+.++.
T Consensus 156 ~g~~T~~e~~~~~~~f~~~lG------k~pV~v~kd~pGFi----~NRl~~a---~~~EA~~lv~eGv-as~edID~a~~ 221 (321)
T PRK07066 156 GGERTAPEAVDAAMGIYRALG------MRPLHVRKEVPGFI----ADRLLEA---LWREALHLVNEGV-ATTGEIDDAIR 221 (321)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEeEecCCCCccHH----HHHHHHH---HHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 33 48999999999999999 88888865555654 4666544 5599999999987 89999999974
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=157.63 Aligned_cols=190 Identities=13% Similarity=0.185 Sum_probs=142.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
|+|+|||+|.||.+||.+|.++|+ +|++|||++++.+.+.+.+. +..+.+++++. + +|+||+|+|+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~------~~~~~~~~~~~-~---aD~Vilavp~~- 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGL------VDEIVSFEELK-K---CDVIFLAIPVD- 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCC------CcccCCHHHHh-c---CCEEEEeCcHH-
Confidence 479999999999999999999996 78999999998887765442 12345666654 3 99999999995
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCC----hhhhh----cCC-cccCC---CC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGG----EEGAR----HGP-SLMPG---GS 151 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg----~~~a~----~G~-~i~~g---g~ 151 (503)
.+.+++.++.+ +.++++|+|++++.....+.+.+. .+..|+++ |++|+ +..+. .|. .++++ ++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~ 145 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSG 145 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCC
Confidence 67888899999 889999999988765544433322 23568886 99875 44332 455 45553 57
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010702 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223 (503)
Q Consensus 152 ~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~ 223 (503)
++.++.++++|+.+| .+++++++.+....++++++.- +....+++++.. .+ .+.+++.++
T Consensus 146 ~~~~~~v~~l~~~~G------~~~~~~~~~~hD~~~a~vs~lp-h~~a~~l~~~~~----~~-~~~~~~~~~ 205 (275)
T PRK08507 146 EKHQERAKEIFSGLG------MRIVYMDAKEHDLHAAYISHLP-HIISFALANTVL----KE-EDERNIFDL 205 (275)
T ss_pred HHHHHHHHHHHHHhC------CEEEEeCHHHHHHHHHHHhHHH-HHHHHHHHHHHH----hc-CChHHHHhh
Confidence 788999999999999 7899999999999999998875 455555555541 24 566655444
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.7e-16 Score=157.67 Aligned_cols=195 Identities=13% Similarity=0.102 Sum_probs=139.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-----hcc-cCC------CCeeeeCCHHHHHhccCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-----AHR-EGQ------LPLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----~~~-~g~------~~i~~~~s~~e~~~~l~~~ 73 (503)
+++|+|||+|.||.+||..|+++|++|++||+++++++.+.+. +.. ... .++..+.++++++++ +
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---a 80 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG---A 80 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc---C
Confidence 4689999999999999999999999999999999988776542 100 000 024556777777766 9
Q ss_pred cEEEEecCCChh-HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh----cCccEecccCCCChhhhhcCCcccC
Q 010702 74 RSVIILVKAGSP-VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGVSGGEEGARHGPSLMP 148 (503)
Q Consensus 74 dvIil~vp~~~~-v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~pvsgg~~~a~~G~~i~~ 148 (503)
|+||+|||+..+ ...++.++.+.++++.+|+..+++. . ..++.+.+.. .++||.++|..+. ...+++
T Consensus 81 DlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~-~-~~~l~~~~~~~~~~ig~h~~~p~~~~~------l~~i~~ 152 (311)
T PRK06130 81 DLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGL-P-ITAIAQAVTRPERFVGTHFFTPADVIP------LVEVVR 152 (311)
T ss_pred CEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCC-C-HHHHHhhcCCcccEEEEccCCCCccCc------eEEEeC
Confidence 999999999754 4566777877776666665444433 2 3355555533 1455555443221 113444
Q ss_pred CC--CHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010702 149 GG--SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (503)
Q Consensus 149 gg--~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 225 (503)
|. ++++++.+.++|+.+| ++++++++...|. +++|. ....++|++.++++.| ++++++.+++.
T Consensus 153 g~~t~~~~~~~v~~l~~~~G------~~~v~~~~d~~G~---i~nr~----~~~~~~Ea~~l~~~g~-~~~~~id~~~~ 217 (311)
T PRK06130 153 GDKTSPQTVATTMALLRSIG------KRPVLVKKDIPGF---IANRI----QHALAREAISLLEKGV-ASAEDIDEVVK 217 (311)
T ss_pred CCCCCHHHHHHHHHHHHHcC------CEEEEEcCCCCCc---HHHHH----HHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 43 7899999999999999 7889998765666 55555 3467899999999988 99999999973
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.5e-16 Score=154.84 Aligned_cols=191 Identities=16% Similarity=0.202 Sum_probs=136.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-------ccCCC----------CeeeeCCHHHHHhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REGQL----------PLTGHYTPRDFVLS 69 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~~----------~i~~~~s~~e~~~~ 69 (503)
++|+|||+|.||.+||.+|+.+|++|.+||++++.++.+.+... ..|.+ +++..+++++ +++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED-LAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-hcC
Confidence 58999999999999999999999999999999998776442100 00000 2556667654 444
Q ss_pred cCCCcEEEEecCCChhHHH-HHHHHHhcCCCCCEEE-ecCCCChhhHHHHHHHHHh----cCccEec-ccCCCChhhhhc
Q 010702 70 IQRPRSVIILVKAGSPVDQ-TIAALSEHMSPGDCII-DGGNEWYLNTERRIHEASQ----KGLLYLG-MGVSGGEEGARH 142 (503)
Q Consensus 70 l~~~dvIil~vp~~~~v~~-vl~~l~~~l~~g~iII-d~st~~~~~t~~~~~~l~~----~gi~~i~-~pvsgg~~~a~~ 142 (503)
+|+||+|+|+..+++. ++.++.+.++++.+|+ ++|+..+ + .+++.+.. .|+||++ +|++++.+-
T Consensus 84 ---aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--s-~la~~~~~~~r~~g~h~~~p~~~~~~vei--- 154 (292)
T PRK07530 84 ---CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI--T-RLASATDRPERFIGIHFMNPVPVMKLVEL--- 154 (292)
T ss_pred ---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH--H-HHHhhcCCcccEEEeeccCCcccCceEEE---
Confidence 9999999999866654 4578888888999887 4444432 2 45554432 2788888 455544321
Q ss_pred CCcccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010702 143 GPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (503)
Q Consensus 143 G~~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 222 (503)
....+++++.++++.++++.+| +.++++++.+ |. ++ |.+ ...+++|++.++.+.- .++++++.
T Consensus 155 --~~g~~t~~~~~~~~~~~~~~~g------k~~v~~~d~p-g~---i~-nRl---~~~~~~ea~~~~~~g~-~~~~~iD~ 217 (292)
T PRK07530 155 --IRGIATDEATFEAAKEFVTKLG------KTITVAEDFP-AF---IV-NRI---LLPMINEAIYTLYEGV-GSVEAIDT 217 (292)
T ss_pred --eCCCCCCHHHHHHHHHHHHHcC------CeEEEecCcC-Ch---HH-HHH---HHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 1225689999999999999999 8888887633 32 33 443 3455699999999865 68999998
Q ss_pred HH
Q 010702 223 IF 224 (503)
Q Consensus 223 ~~ 224 (503)
++
T Consensus 218 ~~ 219 (292)
T PRK07530 218 AM 219 (292)
T ss_pred HH
Confidence 86
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-16 Score=156.22 Aligned_cols=191 Identities=12% Similarity=0.179 Sum_probs=136.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHH-----------HHhhc--------ccCCCCeeeeCCHHHHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDET-----------LDRAH--------REGQLPLTGHYTPRDFV 67 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~~~--------~~g~~~i~~~~s~~e~~ 67 (503)
++|+|||+|.||.+||.+|+.+|++|.+||+++++++.. .+.+. ..+ .+...++. +.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~-~~~ 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLG--RIRCTTNL-EEL 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh--ceEeeCCH-HHh
Confidence 579999999999999999999999999999999887542 22110 000 13344444 445
Q ss_pred hccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEE-ecCCCChhhHHHHHHH-HHhcCccEecccCCCChhhhhcCC
Q 010702 68 LSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCII-DGGNEWYLNTERRIHE-ASQKGLLYLGMGVSGGEEGARHGP 144 (503)
Q Consensus 68 ~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iII-d~st~~~~~t~~~~~~-l~~~gi~~i~~pvsgg~~~a~~G~ 144 (503)
+. ||+||+|||++.+++..+ .++.+.++++.+|+ ++|+..+....+.... .+-.|+||+++|..+.. .
T Consensus 82 ~~---aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~l------v 152 (295)
T PLN02545 82 RD---ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKL------V 152 (295)
T ss_pred CC---CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCce------E
Confidence 55 999999999888877665 67888888888886 6666654433222111 11247888888876422 1
Q ss_pred cccC--CCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010702 145 SLMP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (503)
Q Consensus 145 ~i~~--gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 222 (503)
.++. +++++++++++++|+.+| ++++++++ ..|. +.|.+.. ..++|++.++++.. .++++++.
T Consensus 153 eiv~g~~t~~e~~~~~~~ll~~lG------~~~~~~~d-~~g~----i~nri~~---~~~~ea~~~~~~gv-~~~~~iD~ 217 (295)
T PLN02545 153 EIIRGADTSDEVFDATKALAERFG------KTVVCSQD-YPGF----IVNRILM---PMINEAFYALYTGV-ASKEDIDT 217 (295)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcC------CeeEEecC-cccH----HHHHHHH---HHHHHHHHHHHcCC-CCHHHHHH
Confidence 2222 468999999999999999 78888876 2333 4566544 45699999999977 88999998
Q ss_pred HH
Q 010702 223 IF 224 (503)
Q Consensus 223 ~~ 224 (503)
++
T Consensus 218 ~~ 219 (295)
T PLN02545 218 GM 219 (295)
T ss_pred HH
Confidence 76
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-17 Score=173.90 Aligned_cols=118 Identities=17% Similarity=0.290 Sum_probs=102.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCH---HHHHHHHhCCCcchhhhHHHHHHHHhcCCCCC-CC
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNF---GELARIWKGGCIIRAVFLDRIKKAYQRNPNLA-SL 400 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l---~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~-~l 400 (503)
.++|||+||+||+|+|++|++++|+|.|+++.. + +|. .++++.|+.| .++|+++++..++|+++++.+ ..
T Consensus 175 ~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~---g--l~~~~l~~v~~~w~~g-~~~S~l~ei~~~~~~~~d~~~~~~ 248 (470)
T PTZ00142 175 GSSGHYVKMVHNGIEYGDMQLISESYKLMKHIL---G--MSNEELSEVFNKWNEG-ILNSYLIEITAKILAKKDDLGEEH 248 (470)
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---C--CCHHHHHHHHHHHcCC-CccCHHHHHHHHHhhcccccCCCc
Confidence 489999999999999999999999999998432 2 555 4556669998 589999999999999865433 57
Q ss_pred cchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 401 VVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 401 l~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
++|.+.+...++++| ||+|++|+++|||+|+|++||+ ++++++.+|..
T Consensus 249 ~l~~i~d~~~~~gtg--~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~ 298 (470)
T PTZ00142 249 LVDKILDIAGSKGTG--KWTVQEALERGIPVPTMAASVDARNISALKEERTK 298 (470)
T ss_pred chhhhcCcccCCchH--HhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHH
Confidence 888899999999999 9999999999999999999999 77888887765
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.3e-16 Score=154.40 Aligned_cols=193 Identities=15% Similarity=0.187 Sum_probs=139.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh----------cccCCC----------CeeeeCCHHHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA----------HREGQL----------PLTGHYTPRDF 66 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~----------~~~g~~----------~i~~~~s~~e~ 66 (503)
.+|+|||+|.||.++|..|+.+|++|++||++++.++...+.. ...+.. ++...++. +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 5899999999999999999999999999999999876533210 000000 13344455 34
Q ss_pred HhccCCCcEEEEecCCChhHH-HHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEec-ccCCCChhhh
Q 010702 67 VLSIQRPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLG-MGVSGGEEGA 140 (503)
Q Consensus 67 ~~~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~-~pvsgg~~~a 140 (503)
+++ +|+||+|+|+...++ .++.++.+.++++.+|+..+++. ...++.+.+... |.||++ ++++++.+.
T Consensus 83 ~~~---aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv- 156 (291)
T PRK06035 83 LSD---ADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIEV- 156 (291)
T ss_pred hCC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEEE-
Confidence 454 999999999976544 45577888888888887655543 444555555432 788888 677776553
Q ss_pred hcCCcccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010702 141 RHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (503)
Q Consensus 141 ~~G~~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 220 (503)
..|+ ..++++++++.++++.+| +.++++++.+.....|+++| +++|++.++++.. .++++|
T Consensus 157 ~~g~----~T~~e~~~~~~~~~~~lg------k~~v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~-a~~~~i 217 (291)
T PRK06035 157 VRAA----LTSEETFNTTVELSKKIG------KIPIEVADVPGFFTTRFIEG--------WLLEAIRSFEIGI-ATIKDI 217 (291)
T ss_pred eCCC----CCCHHHHHHHHHHHHHcC------CeEEEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCC-CCHHHH
Confidence 3443 138999999999999999 88999987555555555543 4599999998865 789999
Q ss_pred HHHHH
Q 010702 221 AEIFD 225 (503)
Q Consensus 221 ~~~~~ 225 (503)
+.++.
T Consensus 218 D~~~~ 222 (291)
T PRK06035 218 DEMCK 222 (291)
T ss_pred HHHHh
Confidence 99863
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.9e-15 Score=151.97 Aligned_cols=290 Identities=14% Similarity=0.117 Sum_probs=185.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC----CC----CeeeeCCHHHHHhccCCCcEE
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG----QL----PLTGHYTPRDFVLSIQRPRSV 76 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g----~~----~i~~~~s~~e~~~~l~~~dvI 76 (503)
.+|||+|||+|.||+.+|..|+++| +|.+|.|+++..+.+.+.+.... .. ++...++++++++. +|+|
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~---aDlV 81 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC---ADVV 81 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc---CCEE
Confidence 3579999999999999999999999 78999999999888876532110 00 24566777777766 9999
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHH-HHHHHh----cCccEecccCCCChhhhhcCC--cc-cC
Q 010702 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR-IHEASQ----KGLLYLGMGVSGGEEGARHGP--SL-MP 148 (503)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~-~~~l~~----~gi~~i~~pvsgg~~~a~~G~--~i-~~ 148 (503)
|++||. ..++++++++.+.+.++.+||.++++....+.++ .+.+++ ..+..+..|-.- .+. ..|. .+ +.
T Consensus 82 ilavps-~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a-~ev-~~g~~t~~via 158 (341)
T PRK12439 82 VMGVPS-HGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIA-REV-AEGYAAAAVLA 158 (341)
T ss_pred EEEeCH-HHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHH-HHH-HcCCCeEEEEE
Confidence 999998 5899999999999988888998888776532222 222222 111122223111 111 1243 23 33
Q ss_pred CCCHHHHHHHHHHHHHHhccc---CCC---------CcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 010702 149 GGSFEAYNNIRDILQKVAAQV---DDG---------PCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLS 216 (503)
Q Consensus 149 gg~~~a~~~v~~ll~~ig~~~---~~~---------~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~ 216 (503)
+.+++..+.++.+|..-+-++ ++- ++++.++ .|...-+++..|.....+.+.+.|+..+++..| .+
T Consensus 159 ~~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia-~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G-~~ 236 (341)
T PRK12439 159 MPDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIA-VGMGYSLGIGENTRAMVIARALREMTKLGVAMG-GN 236 (341)
T ss_pred eCCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHH-HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 446677778888886544221 000 2222222 233334456667766777899999999999998 78
Q ss_pred HHHHHHHHHHhccCCcchhHHhhhhhhccccc----cCCCchhHHHHHhhcCCcchHHHHH----HHHHHcCCCcchHHH
Q 010702 217 NAELAEIFDEWNKGELESFLVEITADIFKVKD----EYGEGELVDKILDKTGMKGTGKWTV----QQAAELSVAAPTIAA 288 (503)
Q Consensus 217 ~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~----~~~~~~~ld~i~~~~~~kgtG~~~~----~~A~~~gvp~p~~~~ 288 (503)
++.+... .|.++ |+-++.....++. .+..+..++.+.+.++|.-+|..++ +.++++++.+|++.+
T Consensus 237 ~~t~~gl-----~G~GD--l~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~ 309 (341)
T PRK12439 237 PETFAGL-----AGMGD--LIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIARE 309 (341)
T ss_pred ccccccc-----chhhh--hhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHH
Confidence 8876543 22222 1111111111111 1123356777777778888886655 578889999999985
Q ss_pred HHHHHHHhcchHHHHHHHHHhccC
Q 010702 289 SLDCRYLSGLKEEREKAAKVLKEA 312 (503)
Q Consensus 289 Av~~r~~s~~~~~r~~~~~~~~~~ 312 (503)
+ .+.+...++....+..++..+
T Consensus 310 -~-~~il~~~~~~~~~~~~l~~~~ 331 (341)
T PRK12439 310 -V-DAVINHGSTVEQAYRGLIAEV 331 (341)
T ss_pred -H-HHHHhCCCCHHHHHHHHhcCC
Confidence 3 466777778888888877543
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-15 Score=147.90 Aligned_cols=195 Identities=13% Similarity=0.221 Sum_probs=137.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccCC-----------CCeeeeCCHHHHHh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQ-----------LPLTGHYTPRDFVL 68 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~-----------~~i~~~~s~~e~~~ 68 (503)
++|+|||+|.||.++|..|+.+|++|++||++++.+++..+.. ...+. -+++.+++++++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 5899999999999999999999999999999998776654320 00000 03567788888777
Q ss_pred ccCCCcEEEEecCCChhH-HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC--c
Q 010702 69 SIQRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP--S 145 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~--~ 145 (503)
. +|+||+|+|+..++ ..++.++.+.++++.+|++.+++.+. .++.+.+.. .-+|++...+..+ ...+ -
T Consensus 84 ~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~--~~~~~~~~~-~~r~vg~Hf~~p~---~~~~lve 154 (287)
T PRK08293 84 D---ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLP--SQFAEATGR-PEKFLALHFANEI---WKNNTAE 154 (287)
T ss_pred C---CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCH--HHHHhhcCC-cccEEEEcCCCCC---CcCCeEE
Confidence 6 99999999987544 45568888888888888665555433 233333322 2234443222111 1222 3
Q ss_pred cc--CCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010702 146 LM--PGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223 (503)
Q Consensus 146 i~--~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~ 223 (503)
++ .+.++++++.+.++++.+| +.++.+.+...|..+ |.+ ...+++|++.++++.. .++++|+.+
T Consensus 155 vv~~~~t~~~~~~~~~~~~~~~G------k~pv~v~~d~pgfi~----nRi---~~~~~~ea~~l~~~g~-a~~~~iD~a 220 (287)
T PRK08293 155 IMGHPGTDPEVFDTVVAFAKAIG------MVPIVLKKEQPGYIL----NSL---LVPFLSAALALWAKGV-ADPETIDKT 220 (287)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcC------CeEEEecCCCCCHhH----HHH---HHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 33 4578999999999999999 788888765666655 444 3445699999999876 899999988
Q ss_pred H
Q 010702 224 F 224 (503)
Q Consensus 224 ~ 224 (503)
+
T Consensus 221 ~ 221 (287)
T PRK08293 221 W 221 (287)
T ss_pred H
Confidence 6
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=156.91 Aligned_cols=178 Identities=14% Similarity=0.150 Sum_probs=142.2
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
+++|+||| +|.||.++|+.|.++||+|.+|||++. .++++++.+ +|+||+|+|..
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--------------------~~~~~~~~~---aDlVilavP~~- 153 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--------------------DRAEDILAD---AGMVIVSVPIH- 153 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc--------------------hhHHHHHhc---CCEEEEeCcHH-
Confidence 46899998 999999999999999999999998631 134556665 99999999996
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe-cccCCCChhhhhcCC-cccCCC-CHHHHHHHHHH
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP-SLMPGG-SFEAYNNIRDI 161 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~~a~~G~-~i~~gg-~~~a~~~v~~l 161 (503)
.+.+++.++.+ +++|.+|+|+|++.......+.+.+. ..|+ ..|++|.+.....|. .+++++ ++++++.+.++
T Consensus 154 ~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l 229 (374)
T PRK11199 154 LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQ 229 (374)
T ss_pred HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHH
Confidence 57888888888 89999999999988766665554332 2588 579999877666666 555555 67889999999
Q ss_pred HHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010702 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (503)
Q Consensus 162 l~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 222 (503)
++.+| .+++++++.+....+++++ .+ ..+..++++..+++ .+ .+.+++.+
T Consensus 230 ~~~lG------~~v~~~~~~~HD~~~a~vs-hL--pH~~a~al~~~l~~-~~-~~~~~~~~ 279 (374)
T PRK11199 230 IQVWG------ARLHRISAVEHDQNMAFIQ-AL--RHFATFAYGLHLAK-EN-VDLEQLLA 279 (374)
T ss_pred HHHCC------CEEEECCHHHHHHHHHHHH-HH--HHHHHHHHHHHHHH-cC-CCHHHHHH
Confidence 99999 7899999999999999997 44 56667788888766 56 77766543
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.8e-15 Score=155.40 Aligned_cols=194 Identities=19% Similarity=0.198 Sum_probs=144.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+|+||| +|.||.++|..|.++|++|.+|+|++++..++.... ++....++.+++.. +|+||+|+|.. .
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~------gv~~~~~~~e~~~~---aDvVIlavp~~-~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL------GVEYANDNIDAAKD---ADIVIISVPIN-V 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc------CCeeccCHHHHhcc---CCEEEEecCHH-H
Confidence 5899997 899999999999999999999999988765554432 24556677777776 99999999985 7
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCChhhhhcCC-cccCC---CCHHHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGP-SLMPG---GSFEAYNNIRD 160 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~~~a~~G~-~i~~g---g~~~a~~~v~~ 160 (503)
+.+++.++.+.++++.+|+|++++.....+.+.+.+. .+..|+++ |++|.......|. .+++. .+++.++.+++
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ 149 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKN 149 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHH
Confidence 7899999999999999999999988777766665543 47889986 8887655555666 44443 36788999999
Q ss_pred HHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010702 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (503)
Q Consensus 161 ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 222 (503)
+|+.+| ..++++++... -+++.+......+..++.+..+ .+.| ++.++...
T Consensus 150 ll~~~G------~~v~~~~~e~H---D~~~a~vs~lph~~a~al~~~l-~~~g-~~~~~~~~ 200 (437)
T PRK08655 150 FLEKEG------ARVIVTSPEEH---DRIMSVVQGLTHFAYISIASTL-KRLG-VDIKESRK 200 (437)
T ss_pred HHHHcC------CEEEECCHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHh
Confidence 999999 67888876533 3344333333344444555444 4556 88776543
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-15 Score=148.68 Aligned_cols=193 Identities=19% Similarity=0.228 Sum_probs=136.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHH-----------HHHhhcccC------CCCeeeeCCHHHHHhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDE-----------TLDRAHREG------QLPLTGHYTPRDFVLS 69 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~-----------l~~~~~~~g------~~~i~~~~s~~e~~~~ 69 (503)
+||+|||+|.||.++|..|+.+|++|++||+++++++. +.+.+.... .-+++.+++.++ +++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hcc
Confidence 58999999999999999999999999999999998753 222221000 003455666654 444
Q ss_pred cCCCcEEEEecCCChhHH-HHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh----cCccEec-ccCCCChhhhhcC
Q 010702 70 IQRPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLG-MGVSGGEEGARHG 143 (503)
Q Consensus 70 l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~-~pvsgg~~~a~~G 143 (503)
||+||+|+|+...++ +++.++.+.++++++|+..+++.+ .+ .+.+.+.. .+.||.. +++.++.+ ...|
T Consensus 83 ---aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~-~~-~la~~~~~~~r~ig~h~~~P~~~~~~ve-v~~g 156 (282)
T PRK05808 83 ---ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLS-IT-ELAAATKRPDKVIGMHFFNPVPVMKLVE-IIRG 156 (282)
T ss_pred ---CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCC-HH-HHHHhhCCCcceEEeeccCCcccCccEE-EeCC
Confidence 999999999876666 677889898988888854444432 22 55555532 2566666 34544443 1111
Q ss_pred CcccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010702 144 PSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223 (503)
Q Consensus 144 ~~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~ 223 (503)
.+++++.++.+.++++.+| +.++++++ ..|. +.|.+. ..+++|++.++++.- .++++++.+
T Consensus 157 ----~~t~~e~~~~~~~l~~~lG------k~pv~~~d-~~g~----i~~Ri~---~~~~~ea~~~~~~gv-~~~~diD~~ 217 (282)
T PRK05808 157 ----LATSDATHEAVEALAKKIG------KTPVEVKN-APGF----VVNRIL---IPMINEAIFVLAEGV-ATAEDIDEG 217 (282)
T ss_pred ----CCCCHHHHHHHHHHHHHcC------CeeEEecC-ccCh----HHHHHH---HHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 4578999999999999999 88999964 4454 445554 455599999999876 789999988
Q ss_pred HH
Q 010702 224 FD 225 (503)
Q Consensus 224 ~~ 225 (503)
+.
T Consensus 218 ~~ 219 (282)
T PRK05808 218 MK 219 (282)
T ss_pred HH
Confidence 73
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-16 Score=169.61 Aligned_cols=120 Identities=12% Similarity=0.219 Sum_probs=100.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcch
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGW-NLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVD 403 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w-~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~ 403 (503)
.++|||+||+||+|+|++|++++|+|.|+++.. +. ..++.++++.|+.| .++|++++....+|+++++....|+|
T Consensus 172 ~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~---g~~~~~l~~v~~~w~~~-~~~S~l~~~~~~~~~~~d~~~~~~l~ 247 (467)
T TIGR00873 172 DGAGHYVKMVHNGIEYGDMQLICEAYDILKDGL---GLSNEEIAEVFTEWNNG-ELDSYLIEITADILKKKDEDGKPLVD 247 (467)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHhcCC-cccchHHHhHHHHHhccCCCCCccHH
Confidence 489999999999999999999999999998433 31 12445566678997 78999999999999985544568889
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
.+.+...++++| ||+|++|+++|||+|+|+++++ +.+.++.+|..
T Consensus 248 ~i~~~~~~~gtg--~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~ 294 (467)
T TIGR00873 248 KILDTAGQKGTG--KWTAISALDLGVPVTLITESVFARYLSSLKEERVA 294 (467)
T ss_pred hhcCcccCccHH--HHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHH
Confidence 999999999999 9999999999999999999999 55566666654
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-16 Score=167.52 Aligned_cols=118 Identities=12% Similarity=0.233 Sum_probs=100.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCH---HHHHHHHhCCCcchhhhHHHHHHHHhcCCC-CCCC
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNF---GELARIWKGGCIIRAVFLDRIKKAYQRNPN-LASL 400 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l---~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~-~~~l 400 (503)
.++|||+||+||+|+|++|+.++|+|.|+++.. + +|. .+|++.|+.| .++|+++++..+++.+++. ....
T Consensus 164 ~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~---G--l~~~~l~~v~~~wn~g-~~~S~l~ei~~~~l~~~d~~~~~~ 237 (459)
T PRK09287 164 DGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGL---G--LSAEEIADVFAEWNKG-ELNSYLIEITADILRQKDEETGKP 237 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-CccChHHHhHhHHHhcCCCCCCCc
Confidence 489999999999999999999999999999422 3 555 4556668998 5899999999999987543 4458
Q ss_pred cchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 401 VVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 401 l~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
++|.+.+...+|++| ||++++|+++|||+|+|++|++ +.+.++.+|..
T Consensus 238 ~~d~i~d~~~~~gtg--~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~ 287 (459)
T PRK09287 238 LVDVILDKAGQKGTG--KWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVA 287 (459)
T ss_pred chHHhcCcccCCcHH--HHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHH
Confidence 889999999999999 9999999999999999999999 56667776654
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.5e-14 Score=139.41 Aligned_cols=195 Identities=17% Similarity=0.158 Sum_probs=133.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|+|+|||+|.||..++..|.++|+ +|.+|+|++++.+.+.+... ++....+..+++.. +|+||+|+|+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~-----g~~~~~~~~~~~~~---aDiVilav~p 72 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP-----GIHVAKTIEEVISQ---SDLIFICVKP 72 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC-----CeEEECCHHHHHHh---CCEEEEecCH
Confidence 479999999999999999999994 79999999998877765321 25567788888776 9999999987
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCC--CCHHHHHHHH
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPG--GSFEAYNNIR 159 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~g--g~~~a~~~v~ 159 (503)
..+.++++++.+.+.++++||+++++. ....+...+..+.++++.. .+..+..|. .++.| .+++.++.++
T Consensus 73 -~~~~~vl~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~ 145 (273)
T PRK07680 73 -LDIYPLLQKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLE 145 (273)
T ss_pred -HHHHHHHHHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHH
Confidence 478999999999898899999999865 3445555444333444432 234456777 44555 4677889999
Q ss_pred HHHHHHhcccCCCCcEEEeCCc-chh-HHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010702 160 DILQKVAAQVDDGPCVTYIGEG-GSG-NFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDE 226 (503)
Q Consensus 160 ~ll~~ig~~~~~~~~v~~~G~~-G~g-~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~ 226 (503)
++|+.+| .++++.+. -.. ..+=-+.-++.+..+..+.++. .++.| ++.++..+++.+
T Consensus 146 ~ll~~~G-------~~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~G-l~~~~a~~~~~~ 204 (273)
T PRK07680 146 RLFSNIS-------TPLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETN-ISKEEATTLASE 204 (273)
T ss_pred HHHHcCC-------CEEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcC-CCHHHHHHHHHH
Confidence 9999999 24445432 000 0000011123333334344432 24467 999998888754
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.9e-15 Score=147.75 Aligned_cols=169 Identities=17% Similarity=0.223 Sum_probs=127.9
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
|+..+.++|+|||+|.||..+|..|.+.|+ +|.+|||++++.+.+.+.+.. .....++++++++ +|+||+
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~-----~~~~~~~~~~~~~---aDvVii 72 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLG-----DRVTTSAAEAVKG---ADLVIL 72 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCC-----ceecCCHHHHhcC---CCEEEE
Confidence 677666799999999999999999999995 899999999988776654321 2345567777666 999999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCChh-hhhc-------CC-c---
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEE-GARH-------GP-S--- 145 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~~-~a~~-------G~-~--- 145 (503)
|+|.. ...+++.++.+.++++.+|+|.++......+.....+ ..+++|+++ |+.|++. +... |. .
T Consensus 73 avp~~-~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~ 150 (307)
T PRK07502 73 CVPVG-ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHL-PEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILT 150 (307)
T ss_pred CCCHH-HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhC-CCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEe
Confidence 99985 6788888888889999999999888765554444433 346789986 8887642 2222 22 2
Q ss_pred ccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhH
Q 010702 146 LMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGN 185 (503)
Q Consensus 146 i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~ 185 (503)
.+.+++++.++.++++++.+| .+++++++.....
T Consensus 151 ~~~~~~~~~~~~~~~l~~~lG------~~~~~~~~~~hD~ 184 (307)
T PRK07502 151 PPEGTDPAAVARLTAFWRALG------ARVEEMDPEHHDL 184 (307)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEEEEcCHHHHhH
Confidence 224678899999999999999 6788887644443
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.5e-15 Score=150.64 Aligned_cols=288 Identities=9% Similarity=0.005 Sum_probs=185.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-------CcEEEEeCChh-----HHHHHHHhhcccCCC-------CeeeeCCHHHH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-------FPISVYNRTTS-----KVDETLDRAHREGQL-------PLTGHYTPRDF 66 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~~~~~g~~-------~i~~~~s~~e~ 66 (503)
.+||+|||.|.||++||..|+++| ++|.+|.|+++ .++.+.+.+.+..++ ++...++++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 368999999999999999999998 89999999986 356555443221111 46778888888
Q ss_pred HhccCCCcEEEEecCCChhHHHHHHHHHh--cCCCCCEEEecCCCChhhHH---HHHHHHHhc---CccEecccCCCChh
Q 010702 67 VLSIQRPRSVIILVKAGSPVDQTIAALSE--HMSPGDCIIDGGNEWYLNTE---RRIHEASQK---GLLYLGMGVSGGEE 138 (503)
Q Consensus 67 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~--~l~~g~iIId~st~~~~~t~---~~~~~l~~~---gi~~i~~pvsgg~~ 138 (503)
+++ +|+|+++||+ ..++++++++.+ .+.++.+||.++.+....+. .+.+.+++. .+..+..|-. ..+
T Consensus 91 v~~---aDiIvlAVPs-q~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~-A~E 165 (365)
T PTZ00345 91 VED---ADLLIFVIPH-QFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANV-AND 165 (365)
T ss_pred Hhc---CCEEEEEcCh-HHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCH-HHH
Confidence 887 9999999999 589999999998 78777789988777654332 223333321 2222333322 123
Q ss_pred hhhcCC--cccCCCCHHHHHHHHHHHHHHhccc---CC---------CCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHH
Q 010702 139 GARHGP--SLMPGGSFEAYNNIRDILQKVAAQV---DD---------GPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISE 204 (503)
Q Consensus 139 ~a~~G~--~i~~gg~~~a~~~v~~ll~~ig~~~---~~---------~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~E 204 (503)
-++.-+ ..+++-+.+..+.++.+|..=.-++ ++ -|+++.++. |....+++-.|.-.+.+...+.|
T Consensus 166 va~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~-Gi~dGl~~G~N~kaalitrgl~E 244 (365)
T PTZ00345 166 VAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAA-GFCDGLGLGTNTKSAIIRIGLEE 244 (365)
T ss_pred HHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCChhHHHHHHHHHHHH
Confidence 344445 4445568888888888886322111 00 033333332 44455667889999999999999
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccC----C---CchhHHHHHhhc--CCcchHHHHH-
Q 010702 205 AYDVLKHVG-GLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEY----G---EGELVDKILDKT--GMKGTGKWTV- 273 (503)
Q Consensus 205 a~~l~~~~g-~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~----~---~~~~ld~i~~~~--~~kgtG~~~~- 273 (503)
+.++++..| +.+++++... .|.++ |+-++.. .++..| . ++..++.+.+.+ +|..+|..++
T Consensus 245 m~~l~~a~g~~~~~~T~~gl-----aG~GD--Li~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~ 315 (365)
T PTZ00345 245 MKLFGKIFFPNVMDETFFES-----CGLAD--LITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLK 315 (365)
T ss_pred HHHHHHHhCCCCCccchhcc-----chHhH--hhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHH
Confidence 999999997 2477766543 12222 1111111 111111 1 113566676665 7888887777
Q ss_pred ---HHHHHcCC--CcchHHHHHHHHHHhcchHHHHHHHHHhc
Q 010702 274 ---QQAAELSV--AAPTIAASLDCRYLSGLKEEREKAAKVLK 310 (503)
Q Consensus 274 ---~~A~~~gv--p~p~~~~Av~~r~~s~~~~~r~~~~~~~~ 310 (503)
+.++++++ ++|++.+ + .|.+...++.......++.
T Consensus 316 ~v~~l~~~~~i~~~~Pi~~~-v-y~il~~~~~~~~~~~~l~~ 355 (365)
T PTZ00345 316 EVYEVLESHDLKKEFPLFTV-T-YKIAFEGADPSSLIDVLST 355 (365)
T ss_pred HHHHHHHHcCCCCCCCHHHH-H-HHHHhCCCCHHHHHHHHHc
Confidence 68889999 8999985 4 4566555666666666653
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-13 Score=135.87 Aligned_cols=243 Identities=15% Similarity=0.134 Sum_probs=153.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC---CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKG---FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|||+|+|||+|.||..++..|.++| ++|.+|+|++++.+.+.+.. ++....+..+++.. +|+||+|+|
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~------g~~~~~~~~~~~~~---advVil~v~ 71 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY------GVRAATDNQEAAQE---ADVVVLAVK 71 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc------CCeecCChHHHHhc---CCEEEEEcC
Confidence 4679999999999999999999999 78999999999888776642 24456778887766 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCChhhhhcCC-cccCC--CCHHHHHH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~~~a~~G~-~i~~g--g~~~a~~~ 157 (503)
+. .++++++.+.+.+ +++||.++++.+.. .+...+. .+.+++.+ | ..+.....|. .++++ +++++++.
T Consensus 72 ~~-~~~~v~~~l~~~~--~~~vvs~~~gi~~~--~l~~~~~-~~~~iv~~~P--~~p~~~~~~~~~i~~~~~~~~~~~~~ 143 (267)
T PRK11880 72 PQ-VMEEVLSELKGQL--DKLVVSIAAGVTLA--RLERLLG-ADLPVVRAMP--NTPALVGAGMTALTANALVSAEDREL 143 (267)
T ss_pred HH-HHHHHHHHHHhhc--CCEEEEecCCCCHH--HHHHhcC-CCCcEEEecC--CchHHHcCceEEEecCCCCCHHHHHH
Confidence 85 7999999998876 57888888876433 3333332 24444442 3 2222333444 44555 48899999
Q ss_pred HHHHHHHHhcccCCCCcEEEeCCcchhHHHH-hHHHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHHHHHhccCCcchh
Q 010702 158 IRDILQKVAAQVDDGPCVTYIGEGGSGNFVK-MVHNGIEYGDMQLISEAYDV-LKHVGGLSNAELAEIFDEWNKGELESF 235 (503)
Q Consensus 158 v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK-~v~N~i~~~~~~~~~Ea~~l-~~~~g~~~~~~i~~~~~~~~~g~~~s~ 235 (503)
++.+|+.+| . ++++.++..=+.+- +..++- +.+..+.|++.- +.+.| +++++..+++.++-.|.
T Consensus 144 v~~l~~~lG------~-~~~~~~e~~~d~~~a~~~~~p--a~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~~~~g~---- 209 (267)
T PRK11880 144 VENLLSAFG------K-VVWVDDEKQMDAVTAVSGSGP--AYVFLFIEALADAGVKLG-LPREQARKLAAQTVLGA---- 209 (267)
T ss_pred HHHHHHhCC------e-EEEECChHhcchHHHHhcChH--HHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH----
Confidence 999999999 4 55665322112211 111111 122223333333 45677 99999888875433332
Q ss_pred HHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHH
Q 010702 236 LVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIA 287 (503)
Q Consensus 236 l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~ 287 (503)
.+.+...+ ..+. +.+.+....-||..-.++...+.|++-.++.
T Consensus 210 -----~~~~~~~~-~~~~---~l~~~v~tpgG~t~~gl~~l~~~g~~~~~~~ 252 (267)
T PRK11880 210 -----AKLLLESG-EHPA---ELRDNVTSPGGTTIAALRVLEEKGLRAAVIE 252 (267)
T ss_pred -----HHHHHhcC-CCHH---HHHHhCCCCcHHHHHHHHHHHHCCHHHHHHH
Confidence 22332211 1222 2223333445666666677777888755544
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-13 Score=135.60 Aligned_cols=234 Identities=11% Similarity=0.085 Sum_probs=150.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc---EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFP---ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~---V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
|+|||||+|.||.+|++.|.+.|+. +.+|+|++++.+++.+... ++..+.+..+++++ +|+||+|+|+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~-----~~~~~~~~~~~~~~---aDvVilav~p- 71 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP-----KVRIAKDNQAVVDR---SDVVFLAVRP- 71 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC-----CceEeCCHHHHHHh---CCEEEEEeCH-
Confidence 4799999999999999999999865 5799999999888776431 14567788888877 9999999996
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHH
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQ 163 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~ 163 (503)
..+.+++.++ . +.++++||++..+. ....+...+......+..+|..... ...|.+.+++++ +.++++|+
T Consensus 72 ~~~~~vl~~l-~-~~~~~~vis~~ag~--~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~t~~~~~~----~~~~~l~~ 141 (258)
T PRK06476 72 QIAEEVLRAL-R-FRPGQTVISVIAAT--DRAALLEWIGHDVKLVRAIPLPFVA--ERKGVTAIYPPD----PFVAALFD 141 (258)
T ss_pred HHHHHHHHHh-c-cCCCCEEEEECCCC--CHHHHHHHhCCCCCEEEECCCChhh--hCCCCeEecCCH----HHHHHHHH
Confidence 5788888876 2 56789999877554 4445555554333445567763322 233555555553 57899999
Q ss_pred HHhcccCCCCcEEEeCCcchhHHHHhHHHH-----HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHh
Q 010702 164 KVAAQVDDGPCVTYIGEGGSGNFVKMVHNG-----IEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVE 238 (503)
Q Consensus 164 ~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~-----i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~ 238 (503)
.+| .++. ++++ |...+. .....+.++.++..++.+.| +++++..+++.+.-.|
T Consensus 142 ~lG------~~~~-~~~e------~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~~~~G-------- 199 (258)
T PRK06476 142 ALG------TAVE-CDSE------EEYDLLAAASALMATYFGILETATGWLEEQG-LKRQKARAYLAPLFAS-------- 199 (258)
T ss_pred hcC------CcEE-ECCh------HhccceeehhccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHH--------
Confidence 999 3333 4322 111111 22223346788888999999 9999998887433222
Q ss_pred hhhhh-ccccccCCCchhHHHHHhh-cCCcchHHHHHHHHHHcCCCcchHH
Q 010702 239 ITADI-FKVKDEYGEGELVDKILDK-TGMKGTGKWTVQQAAELSVAAPTIA 287 (503)
Q Consensus 239 ~~~~~-l~~~~~~~~~~~ld~i~~~-~~~kgtG~~~~~~A~~~gvp~p~~~ 287 (503)
+... +.. .+.++ +.+.|. ...-||..-.+..-.+.|+.-.++.
T Consensus 200 -~~~l~~~~-~~~~~----~~l~~~v~spgGtT~~gl~~le~~~~~~~~~~ 244 (258)
T PRK06476 200 -LAQDAVRS-TKTDF----SALSREFSTKGGLNEQVLNDFSRQGGYAALTD 244 (258)
T ss_pred -HHHHHHhc-CCCCH----HHHHHhCCCCCchHHHHHHHHHHCChHHHHHH
Confidence 2233 222 22222 333333 3445666555566666777644433
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.7e-15 Score=148.82 Aligned_cols=278 Identities=13% Similarity=0.047 Sum_probs=175.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCC--------CcEEEEeC-----ChhHHHHHHHhhcccCCC-------CeeeeCCHHHHH
Q 010702 8 RIGLAGLAVMGQNLALNVAEKG--------FPISVYNR-----TTSKVDETLDRAHREGQL-------PLTGHYTPRDFV 67 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G--------~~V~v~dr-----~~~~~~~l~~~~~~~g~~-------~i~~~~s~~e~~ 67 (503)
||+|||.|.||.+||..|+++| ++|.+|.| +++..+.+.+...+..++ +++..+++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999999 555555544332211001 356778888888
Q ss_pred hccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhh--HHH-HHHHHHhc-C--ccEecccCCCChhhhh
Q 010702 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN--TER-RIHEASQK-G--LLYLGMGVSGGEEGAR 141 (503)
Q Consensus 68 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~--t~~-~~~~l~~~-g--i~~i~~pvsgg~~~a~ 141 (503)
++ +|+||++||+ ..+++++.++.+++.++.++|.++.+.... +.. +.+.+++. + +.++..|-.. .+-++
T Consensus 81 ~~---ADiIIlAVPs-~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A-~Eva~ 155 (342)
T TIGR03376 81 KG---ADILVFVIPH-QFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLA-NEVAK 155 (342)
T ss_pred hc---CCEEEEECCh-HHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchH-HHHHc
Confidence 87 9999999999 589999999999998889999998876554 322 22333321 2 2223333221 23344
Q ss_pred cCC-cc-cCCCC----HHHHHHHHHHHHHHhccc---CC---------CCcEEEeCCcchhHHHHhHHHHHHHHHHHHHH
Q 010702 142 HGP-SL-MPGGS----FEAYNNIRDILQKVAAQV---DD---------GPCVTYIGEGGSGNFVKMVHNGIEYGDMQLIS 203 (503)
Q Consensus 142 ~G~-~i-~~gg~----~~a~~~v~~ll~~ig~~~---~~---------~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~ 203 (503)
.-| .+ +.+.+ .+..+.++.+|..=--++ ++ -|+++.++. |....+.+-.|.-.+.+.+.+.
T Consensus 156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~-Gi~~Gl~~g~N~~aalitrgl~ 234 (342)
T TIGR03376 156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAA-GFVDGLGWGDNAKAAVMRRGLL 234 (342)
T ss_pred CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHH
Confidence 444 33 34456 688888888885322110 00 033333332 4445556778999999999999
Q ss_pred HHHHHHHHhCCCCHH--HHHHHHHHhccCCcchhHHhhhhhhcccccc----CCC-chhHHHHHhh--cCCcchHHHHHH
Q 010702 204 EAYDVLKHVGGLSNA--ELAEIFDEWNKGELESFLVEITADIFKVKDE----YGE-GELVDKILDK--TGMKGTGKWTVQ 274 (503)
Q Consensus 204 Ea~~l~~~~g~~~~~--~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~----~~~-~~~ld~i~~~--~~~kgtG~~~~~ 274 (503)
|+..+++..| -+++ .+... .|.++ |+-+... .++.. +.. +..++.+.+. .+++.+|..++.
T Consensus 235 Em~~l~~~~g-~~~~~~T~~gl-----~G~GD--L~~Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~ 304 (342)
T TIGR03376 235 EMIKFARMFF-PTGEVTFTFES-----CGVAD--LITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAK 304 (342)
T ss_pred HHHHHHHHhC-CCCCCCccccc-----chhhh--hhheeec--CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHH
Confidence 9999999998 5555 44332 12222 1111111 00011 122 3566777777 678888877764
Q ss_pred ----HHHHcCCC--cchHHHHHHHHHHhcchHHHH
Q 010702 275 ----QAAELSVA--APTIAASLDCRYLSGLKEERE 303 (503)
Q Consensus 275 ----~A~~~gvp--~p~~~~Av~~r~~s~~~~~r~ 303 (503)
.+.++++. +|++.+ ++ +.+...++.+.
T Consensus 305 ~~~~l~~~~~i~~~~Pi~~~-vy-~il~~~~~~~~ 337 (342)
T TIGR03376 305 EVHELLKNKNKDDEFPLFEA-VY-QILYEGLPPKK 337 (342)
T ss_pred HHHHHHHHcCCCcCCCHHHH-HH-HHHhCCCCHHH
Confidence 57889999 999985 44 44444344433
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-14 Score=142.15 Aligned_cols=255 Identities=18% Similarity=0.202 Sum_probs=163.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----CC--CCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----GQ--LPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g~--~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|||+|||+|.||..+|..|+++|++|++|+| +++.+.+.+.+... +. ......++.++.... +|+||+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP---FDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC---CCEEEEEe
Confidence 5899999999999999999999999999999 77777776543210 00 001123445554444 99999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccCCCChhhhhcCC-cccCCC----C
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGG----S 151 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsgg~~~a~~G~-~i~~gg----~ 151 (503)
|.. +++++++.+.+.+.++++||...|+.. ..+.+.+.+.+. ++.++++...++..-...+. .+..|. .
T Consensus 77 k~~-~~~~~~~~l~~~~~~~~~ii~~~nG~~-~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 77 KAY-QLDAAIPDLKPLVGEDTVIIPLQNGIG-QLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred ccc-CHHHHHHHHHhhcCCCCEEEEeeCCCC-hHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 985 789999999998888899988888752 233444444332 34455554433211111233 344432 3
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHH---------------------HHHHHHHHHHHHHHH
Q 010702 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIE---------------------YGDMQLISEAYDVLK 210 (503)
Q Consensus 152 ~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~---------------------~~~~~~~~Ea~~l~~ 210 (503)
.+..+.+..+|...+ ..+....+.-...+.|++.|... .....++.|+..+++
T Consensus 155 ~~~~~~l~~~l~~~g------~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~ 228 (305)
T PRK12921 155 SERTRAVRDALAGAR------LEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVAR 228 (305)
T ss_pred CHHHHHHHHHHHhCC------CCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 455566777777766 34445455666778888877543 335567899999999
Q ss_pred HhCCCC--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHH
Q 010702 211 HVGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (503)
Q Consensus 211 ~~g~~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~ 288 (503)
+.| ++ .+.+.+.+....... ......+..+..+.+. ..+|.+.. ..++.|+++|+|+|....
T Consensus 229 a~G-~~~~~~~~~~~~~~~~~~~-~~~~sSm~~D~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P~~~~ 292 (305)
T PRK12921 229 AEG-APLRDDVVEEIVKIFAGAP-GDMKTSMLRDMEKGRP-----LEIDHLQG---------VLLRRARAHGIPTPILDT 292 (305)
T ss_pred HcC-CCCChhHHHHHHHHHhccC-CCCCcHHHHHHHcCCc-----ccHHHHHH---------HHHHHHHHhCCCCcHHHH
Confidence 988 76 334444433221111 1122334456554322 47777775 468999999999999885
Q ss_pred H
Q 010702 289 S 289 (503)
Q Consensus 289 A 289 (503)
.
T Consensus 293 l 293 (305)
T PRK12921 293 V 293 (305)
T ss_pred H
Confidence 4
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=136.08 Aligned_cols=192 Identities=10% Similarity=0.113 Sum_probs=134.8
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChhHHH-----HHHHhhcccCCCCeeeeC
Q 010702 7 SRIGLAGLAVM--------------------GQNLALNVAEKGFPISVYNRTTSKVD-----ETLDRAHREGQLPLTGHY 61 (503)
Q Consensus 7 ~~IgIIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~~-----~l~~~~~~~g~~~i~~~~ 61 (503)
|||.|.|+|+- |.+||++|+++||+|++|||++++.+ .+.+.| +..++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaG-------A~~Aa 73 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAG-------VKVVS 73 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCC-------CeecC
Confidence 57889998864 78999999999999999999987653 355443 56788
Q ss_pred CHHHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHH-H--Hhc--Ccc-EecccCCC
Q 010702 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE-A--SQK--GLL-YLGMGVSG 135 (503)
Q Consensus 62 s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~-l--~~~--gi~-~i~~pvsg 135 (503)
++.+++++ +|+||+|+|++.+++++++++.+.+.+|++|||+||+.|....+..+. + ..+ |+. |..+.|-|
T Consensus 74 S~aEAAa~---ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 74 DDKEAAKH---GEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred CHHHHHhC---CCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 99999988 999999999999999999999999999999999999999988876654 2 223 322 22223333
Q ss_pred ChhhhhcCCcccCC--------CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHH
Q 010702 136 GEEGARHGPSLMPG--------GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYD 207 (503)
Q Consensus 136 g~~~a~~G~~i~~g--------g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~ 207 (503)
.+. ++-.++.| .+++..+++.++.+..+ +..+.+...=.+...-|+ -.+.+...+.+.+-+.
T Consensus 151 ~~~---~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~------~~~~~~pa~l~~~v~Dm~-s~vta~~~~gil~y~~ 220 (341)
T TIGR01724 151 TPQ---HGHYVIGGKPTAGKEMATEEQISKCVELAKSTG------KKAYVVPADVTSAVADMG-SLVTAVALAGVLDYYY 220 (341)
T ss_pred CCC---CceeeeccccccccccCCHHHHHHHHHHHHHhC------CCeeecchhhcchhhhHH-HHHHHHHHHHHHHHHH
Confidence 221 11122222 27888999999999998 666666443333333343 2333445566667777
Q ss_pred HHHHhCCCCHH
Q 010702 208 VLKHVGGLSNA 218 (503)
Q Consensus 208 l~~~~g~~~~~ 218 (503)
.+.+..|.+.+
T Consensus 221 ~~t~i~~ap~~ 231 (341)
T TIGR01724 221 VGTQIINAPKE 231 (341)
T ss_pred HHHHHhcCcHH
Confidence 77665545443
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-13 Score=138.94 Aligned_cols=276 Identities=12% Similarity=0.102 Sum_probs=156.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----C-C--CCeeeeCCHHHHH-hccCCCcEEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----G-Q--LPLTGHYTPRDFV-LSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g-~--~~i~~~~s~~e~~-~~l~~~dvIil 78 (503)
|||+|||+|.||..+|..|+++|++|++|+|+++.++.+.+.+... + . .++....++.+.+ .. +|+||+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~Dliii 77 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDN---ATCIIL 77 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCC---CCEEEE
Confidence 4799999999999999999999999999999998888777642110 0 0 0244556676665 34 899999
Q ss_pred ecCCChhHHHHHHHHHh-cCCCCCEEEecCCCChhh-----HHHHHHHHHhcCccEecccCCCChhhhhcCC-cc-cCCC
Q 010702 79 LVKAGSPVDQTIAALSE-HMSPGDCIIDGGNEWYLN-----TERRIHEASQKGLLYLGMGVSGGEEGARHGP-SL-MPGG 150 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~-~l~~g~iIId~st~~~~~-----t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i-~~gg 150 (503)
+||+ ..++++++++.+ .+.++..|+.++++.... .+.+.+.+....+..+..|-.. .+.+...+ .+ +.|.
T Consensus 78 avks-~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a-~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 78 AVPT-QQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFA-KEIAEKLPCSIVLAGQ 155 (326)
T ss_pred EeCH-HHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHH-HHHHcCCCcEEEEecC
Confidence 9999 489999999998 888777777777776332 2222222222222222222110 12333334 33 3444
Q ss_pred CHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHH-----------------HHHHHHHHHHHHHHHHHHHHhC
Q 010702 151 SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVH-----------------NGIEYGDMQLISEAYDVLKHVG 213 (503)
Q Consensus 151 ~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~-----------------N~i~~~~~~~~~Ea~~l~~~~g 213 (503)
+.+..+++..+|..-+ ..+....+.-.-.+.|.+- |.....+.+++.|+..+++..|
T Consensus 156 ~~~~~~~l~~~l~~~~------~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G 229 (326)
T PRK14620 156 NETLGSSLISKLSNEN------LKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKN 229 (326)
T ss_pred CHHHHHHHHHHHCCCC------eEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhC
Confidence 5554455555554433 2222222222223334333 3444556788999999999988
Q ss_pred CC--CHHHHH------HHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchH----HHHHHHHHHcCC
Q 010702 214 GL--SNAELA------EIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTG----KWTVQQAAELSV 281 (503)
Q Consensus 214 ~~--~~~~i~------~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG----~~~~~~A~~~gv 281 (503)
. +++++. +.+..-.....+++-+... + ..+..++.+.+...+.-+| +.+.+.++++|+
T Consensus 230 -~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~---l------~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i 299 (326)
T PRK14620 230 -GSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFK---I------GNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNI 299 (326)
T ss_pred -CCCCcchhhccchhhhhhheecCCCCCcHHHHHH---H------HCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCC
Confidence 5 777774 3331111011222221111 0 0112233333222211122 367789999999
Q ss_pred CcchHHHHHHHHHHhcchHHHHHH
Q 010702 282 AAPTIAASLDCRYLSGLKEEREKA 305 (503)
Q Consensus 282 p~p~~~~Av~~r~~s~~~~~r~~~ 305 (503)
++|++.. +. +.+...++.....
T Consensus 300 ~~P~~~~-l~-~~~~~~~~~~~~~ 321 (326)
T PRK14620 300 ELPICES-IY-NLLYENISLEKTI 321 (326)
T ss_pred CCCHHHH-HH-HHHhCCCCHHHHH
Confidence 9999885 33 4444333344333
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=9e-14 Score=140.23 Aligned_cols=255 Identities=16% Similarity=0.200 Sum_probs=151.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc--cCCC--CeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR--EGQL--PLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~--~g~~--~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|+|+|||+|.||+.+|..|+++|++|++++|+++..+.+.+.+.. .+.. .+....+++++ . .+|+||+++|.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~---~~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G---PQDLVILAVKA 76 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C---CCCEEEEeccc
Confidence 589999999999999999999999999999998888877665421 0100 01223444443 3 49999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccCCCChhhhhcCC-cccCCC---CHHH
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGG---SFEA 154 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsgg~~~a~~G~-~i~~gg---~~~a 154 (503)
. ++++++..+.+.+.++++||...|+.. ..+.+.+.+... |+.++++-..+.......+. .+..|. +.+.
T Consensus 77 ~-~~~~~~~~l~~~l~~~~~iv~~~nG~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 77 Y-QLPAALPSLAPLLGPDTPVLFLQNGVG-HLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred c-cHHHHHHHHhhhcCCCCEEEEecCCCC-cHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 5 789999999999888888998888753 223333433322 11222221211111111122 222332 2233
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHHhC
Q 010702 155 YNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN---------------------GIEYGDMQLISEAYDVLKHVG 213 (503)
Q Consensus 155 ~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N---------------------~i~~~~~~~~~Ea~~l~~~~g 213 (503)
.+.+.++|...+ ..+....+.-...+.|++.| ........++.|+..++++.|
T Consensus 155 ~~~l~~~l~~~~------~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G 228 (304)
T PRK06522 155 AEALADLLNAAG------LDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEG 228 (304)
T ss_pred HHHHHHHHHhcC------CCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcC
Confidence 566777777666 23322223344444454444 233445677899999999987
Q ss_pred CCC--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 214 GLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 214 ~~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
++ .+.+.+.+......... ...++..++...+. ..+|.+.. +.++.|+++|+|+|.....
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~-~~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~l 290 (304)
T PRK06522 229 -VHLSVEEVREYVRQVIQKTAA-NTSSMLQDLEAGRP-----TEIDAIVG---------YVLRRGRKHGIPTPLNDAL 290 (304)
T ss_pred -CCCChHHHHHHHHHHhhccCC-CCchHHHHHHcCCC-----cccchhcc---------HHHHHHHHcCCCCcHHHHH
Confidence 65 34444443322211111 12334445544322 35666554 5789999999999987643
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-14 Score=142.44 Aligned_cols=178 Identities=14% Similarity=0.133 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhH-------HHHHHH-------hhcccCCC----------CeeeeCC--HHHHHhcc
Q 010702 17 MGQNLALNVAEKGFPISVYNRTTSK-------VDETLD-------RAHREGQL----------PLTGHYT--PRDFVLSI 70 (503)
Q Consensus 17 mG~~lA~~L~~~G~~V~v~dr~~~~-------~~~l~~-------~~~~~g~~----------~i~~~~s--~~e~~~~l 70 (503)
||.+||..++.+|++|.+||++++. ++...+ .....|.+ +++...+ +.+++++
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~- 79 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD- 79 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc-
Confidence 8999999999999999999999842 111110 00000100 4555544 5566666
Q ss_pred CCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHH----hcCccEeccc-------CCCChh
Q 010702 71 QRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS----QKGLLYLGMG-------VSGGEE 138 (503)
Q Consensus 71 ~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~----~~gi~~i~~p-------vsgg~~ 138 (503)
+|+||.|||++.+++..+ .++.+.++++.|| +||++.....++++.+. ..|+||+++| |++|+
T Consensus 80 --aD~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~- 154 (314)
T PRK08269 80 --ADLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD- 154 (314)
T ss_pred --CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC-
Confidence 999999999999998877 6787888888888 45555556667777663 3489999988 66554
Q ss_pred hhhcCCcccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 010702 139 GARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (503)
Q Consensus 139 ~a~~G~~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 218 (503)
++++++++++.++++.+| +.++++++.+ |+. -|.+ ...+++|++.++++.+ ++++
T Consensus 155 ----------~t~~e~~~~~~~ll~~lG------k~~v~v~d~~-Gfi----~nri---~~~~l~EAl~l~e~g~-~~~e 209 (314)
T PRK08269 155 ----------ATDPAVVDRLAALLERIG------KVPVVCGPSP-GYI----VPRI---QALAMNEAARMVEEGV-ASAE 209 (314)
T ss_pred ----------CCCHHHHHHHHHHHHHcC------CcEEEecCCC-Ccc----hHHH---HHHHHHHHHHHHHhCC-CCHH
Confidence 579999999999999999 8899998754 542 3443 5667799999999988 9999
Q ss_pred HHHHHHH
Q 010702 219 ELAEIFD 225 (503)
Q Consensus 219 ~i~~~~~ 225 (503)
++++++.
T Consensus 210 ~iD~a~~ 216 (314)
T PRK08269 210 DIDKAIR 216 (314)
T ss_pred HHHHHHH
Confidence 9999873
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.5e-13 Score=131.46 Aligned_cols=194 Identities=13% Similarity=0.111 Sum_probs=130.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.++|||||+|.||.+|+.+|.++|+ +|++|||++++.+.+.+.. ++..+.+..+++.+ +|+||+|||
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLavk 72 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY------GITITTNNNEVANS---ADILILSIK 72 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc------CcEEeCCcHHHHhh---CCEEEEEeC
Confidence 4689999999999999999999885 6999999999988876532 24567788888877 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe-cccCCCChhhhhcCC-cccCC--CCHHHHHH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~~a~~G~-~i~~g--g~~~a~~~ 157 (503)
+ ..+.++++++.+.+.++.+||+.-.+.. ...+.+.+... .+.+ -+|-. +.....|. .+.++ .+++..+.
T Consensus 73 P-~~~~~vl~~l~~~~~~~~lvISi~AGi~--i~~l~~~l~~~-~~vvR~MPN~--~~~vg~g~t~~~~~~~~~~~~~~~ 146 (272)
T PRK12491 73 P-DLYSSVINQIKDQIKNDVIVVTIAAGKS--IKSTENEFDRK-LKVIRVMPNT--PVLVGEGMSALCFNEMVTEKDIKE 146 (272)
T ss_pred h-HHHHHHHHHHHHhhcCCcEEEEeCCCCc--HHHHHHhcCCC-CcEEEECCCh--HHHHcCceEEEEeCCCCCHHHHHH
Confidence 7 6899999999998888899999877763 33444444321 1222 23422 22334555 33333 35667788
Q ss_pred HHHHHHHHhcccCCCCcEEEeCCc--chhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010702 158 IRDILQKVAAQVDDGPCVTYIGEG--GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (503)
Q Consensus 158 v~~ll~~ig~~~~~~~~v~~~G~~--G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 225 (503)
++.+|+.+| . ++.+.+. -....+-=+--++.+.++..+.++ +.+.| ++.++..++..
T Consensus 147 v~~lf~~~G------~-~~~~~E~~~d~~talsgsgPAf~~~~~eal~~a---~v~~G-l~~~~A~~l~~ 205 (272)
T PRK12491 147 VLNIFNIFG------Q-TEVVNEKLMDVVTSISGSSPAYVYMFIEAMADA---AVLGG-MPRKQAYKFAA 205 (272)
T ss_pred HHHHHHcCC------C-EEEEcHHHhhhHHHhccCcHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 999999999 3 3455431 111111011112333444444544 45667 99999888864
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-13 Score=140.74 Aligned_cols=170 Identities=14% Similarity=0.158 Sum_probs=124.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
.+|+|||+|.||.+||+.|.++|++|.+|+++++..+.....+... .-....++++++++ +|+||+|+|.. .+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~---aDlVilavP~~-~~ 73 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGV---IDELAADLQRAAAE---ADLIVLAVPVD-AT 73 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCC---CcccccCHHHHhcC---CCEEEEeCCHH-HH
Confidence 3799999999999999999999999999999887654433322110 01234566777766 99999999995 78
Q ss_pred HHHHHHHHh-cCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChh-hh-------hcCC-cccC---CCCH
Q 010702 87 DQTIAALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEE-GA-------RHGP-SLMP---GGSF 152 (503)
Q Consensus 87 ~~vl~~l~~-~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~-~a-------~~G~-~i~~---gg~~ 152 (503)
.+++.++.+ .+.++.+|+|.+++.........+. ...+.+|++ .|+.|++. |. ..|. .+++ ++++
T Consensus 74 ~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~ 152 (359)
T PRK06545 74 AALLAELADLELKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDP 152 (359)
T ss_pred HHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCH
Confidence 899999987 4888999999999887666555443 334678998 68888642 22 2343 3333 2588
Q ss_pred HHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhH
Q 010702 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMV 190 (503)
Q Consensus 153 ~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v 190 (503)
+.++.++++++.+| .+++++.+......+-++
T Consensus 153 ~~~~~v~~l~~~lG------a~~v~~~~~~HD~~~A~v 184 (359)
T PRK06545 153 DAVAELKDLLSGTG------AKFVVLDAEEHDRAVALV 184 (359)
T ss_pred HHHHHHHHHHHHcC------CEEEECCHHHHhHHHhHh
Confidence 99999999999999 678888776555555444
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-12 Score=133.37 Aligned_cols=254 Identities=13% Similarity=0.135 Sum_probs=155.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc----cCCC---CeeeeCCHHHHHhccCCCcEEE
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR----EGQL---PLTGHYTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~----~g~~---~i~~~~s~~e~~~~l~~~dvIi 77 (503)
.+|+|+|||+|.||+.+|..|+++|++|+++.|++. +.+.+.+.. .+.. .+....++++ . ..+|+||
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~---~~~D~vi 77 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAED-M---PPCDWVL 77 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhh-c---CCCCEEE
Confidence 346999999999999999999999999999999863 344443321 0000 0112223322 2 3489999
Q ss_pred EecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccCCCCh-hh-hhcCC-cc--cC
Q 010702 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGE-EG-ARHGP-SL--MP 148 (503)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsgg~-~~-a~~G~-~i--~~ 148 (503)
+|||.. ++.+++..+.+.+.++.+|+...|+.. ..+.+.+.+.+. |+.++++...+.. .. ...|. .+ ..
T Consensus 78 lavK~~-~~~~~~~~l~~~~~~~~~iv~lqNG~~-~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~ 155 (313)
T PRK06249 78 VGLKTT-ANALLAPLIPQVAAPDAKVLLLQNGLG-VEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHS 155 (313)
T ss_pred EEecCC-ChHhHHHHHhhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCC
Confidence 999986 678888999998888889998888753 333444444332 3344444333211 11 11222 11 12
Q ss_pred CCC-----HHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHH---------------------HHHHHHHHH
Q 010702 149 GGS-----FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG---------------------IEYGDMQLI 202 (503)
Q Consensus 149 gg~-----~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~---------------------i~~~~~~~~ 202 (503)
+.+ .+..+.+..+|+..+ ..+....+.-..-+.|++.|. .......++
T Consensus 156 ~~~~~~~~~~~~~~l~~~l~~ag------~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~ 229 (313)
T PRK06249 156 GPAADDGITARVEEGAALFRAAG------IDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALM 229 (313)
T ss_pred CCcccchHHHHHHHHHHHHHhCC------CCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHH
Confidence 223 456667778888777 334344444445555555442 234456778
Q ss_pred HHHHHHHHHhCCCC--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcC
Q 010702 203 SEAYDVLKHVGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELS 280 (503)
Q Consensus 203 ~Ea~~l~~~~g~~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~g 280 (503)
.|++.++++.| ++ .+.+.+++.. ...... ...++..++.+.+. ..+|.+.. +.++.|+++|
T Consensus 230 ~E~~~va~a~G-i~~~~~~~~~~~~~-~~~~~~-~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~G 292 (313)
T PRK06249 230 AEVIQGAAACG-HTLPEGYADHMLAV-TERMPD-YRPSMYHDFEEGRP-----LELEAIYA---------NPLAAARAAG 292 (313)
T ss_pred HHHHHHHHhcC-CCCChhHHHHHHHH-hhcCCC-CCChHHHHHHCCCc-----ccHHHHhh---------HHHHHHHHhC
Confidence 99999999988 76 2333333322 222111 22344456654332 47888775 5799999999
Q ss_pred CCcchHHHH
Q 010702 281 VAAPTIAAS 289 (503)
Q Consensus 281 vp~p~~~~A 289 (503)
+|+|.....
T Consensus 293 i~~P~~~~l 301 (313)
T PRK06249 293 CAMPRVEML 301 (313)
T ss_pred CCCcHHHHH
Confidence 999987754
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.1e-13 Score=133.66 Aligned_cols=192 Identities=17% Similarity=0.240 Sum_probs=130.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccCCC----------CeeeeCCHHHHHh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQL----------PLTGHYTPRDFVL 68 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~i~~~~s~~e~~~ 68 (503)
.++|||||+|.||.++|..++..||+|.++|++++.+++..... ...|.+ +++...++.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~--- 79 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAA--- 79 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhH---
Confidence 46899999999999999999998899999999987654433211 111101 3444444442
Q ss_pred ccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHH--hc--CccEecccC-CCChhhhhc
Q 010702 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QK--GLLYLGMGV-SGGEEGARH 142 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~--~~--gi~~i~~pv-sgg~~~a~~ 142 (503)
+++||+||.+|+++..++.-+ .++-..++++.|+-..+++.+.+ ++++.+. ++ |.||++.|. +.-.+
T Consensus 80 -l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it--~ia~~~~rper~iG~HFfNP~~~m~LVE---- 152 (307)
T COG1250 80 -LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSIT--ELAEALKRPERFIGLHFFNPVPLMPLVE---- 152 (307)
T ss_pred -hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHH--HHHHHhCCchhEEEEeccCCCCcceeEE----
Confidence 334999999999998887655 66767776766666555444333 3444442 22 778887642 22111
Q ss_pred CCcccCC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010702 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (503)
Q Consensus 143 G~~i~~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 220 (503)
++.| .++++++++.++.+.++ +.+. +...-.|+++ |.+ ....+.|++.++.+.. .+++++
T Consensus 153 ---vI~g~~T~~e~~~~~~~~~~~ig------K~~v-v~~D~pGFi~----NRi---l~~~~~eA~~l~~eGv-a~~e~I 214 (307)
T COG1250 153 ---VIRGEKTSDETVERVVEFAKKIG------KTPV-VVKDVPGFIV----NRL---LAALLNEAIRLLEEGV-ATPEEI 214 (307)
T ss_pred ---EecCCCCCHHHHHHHHHHHHHcC------CCCE-eecCCCceeh----HhH---HHHHHHHHHHHHHhCC-CCHHHH
Confidence 2233 37899999999999999 5553 3334555554 554 4556699999999987 999999
Q ss_pred HHHHH
Q 010702 221 AEIFD 225 (503)
Q Consensus 221 ~~~~~ 225 (503)
+.++.
T Consensus 215 D~~~~ 219 (307)
T COG1250 215 DAAMR 219 (307)
T ss_pred HHHHH
Confidence 99974
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-13 Score=126.31 Aligned_cols=149 Identities=21% Similarity=0.252 Sum_probs=98.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh---------------cccCCCCeeeeCCHHHHHhccC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA---------------HREGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~i~~~~s~~e~~~~l~ 71 (503)
|||+|||+|.+|..+|..|+++||+|++||.++++++.+.+.. ...+ ++..+.+.++.+.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~--~l~~t~~~~~ai~~-- 76 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAG--RLRATTDIEEAIKD-- 76 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTT--SEEEESEHHHHHHH--
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccc--cchhhhhhhhhhhc--
Confidence 6899999999999999999999999999999999988766321 1111 57888899988887
Q ss_pred CCcEEEEecCCC---------hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHH-HHhcC-----ccEecccCCC-
Q 010702 72 RPRSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE-ASQKG-----LLYLGMGVSG- 135 (503)
Q Consensus 72 ~~dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~-l~~~g-----i~~i~~pvsg- 135 (503)
+|++|+|||++ ..++++++.+.+.++++++||--||..|.+++++... +++.+ ++..-+|-.=
T Consensus 77 -adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~ 155 (185)
T PF03721_consen 77 -ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLR 155 (185)
T ss_dssp --SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------
T ss_pred -cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccC
Confidence 99999999854 3478888999999999999999999999999966554 44332 3444455221
Q ss_pred -C-h-hhhhcCCcccCCCCHHHHH-HHHH
Q 010702 136 -G-E-EGARHGPSLMPGGSFEAYN-NIRD 160 (503)
Q Consensus 136 -g-~-~~a~~G~~i~~gg~~~a~~-~v~~ 160 (503)
| . ...++-+.++.|.+++..+ ++++
T Consensus 156 ~G~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 156 EGRAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp TTSHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred CCCcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 1 1 1122223556665544333 5544
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-12 Score=127.64 Aligned_cols=161 Identities=18% Similarity=0.243 Sum_probs=116.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHhhcccCCCCeeeeCCH-HHHHhccCCCcEEEEecC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK--VDETLDRAHREGQLPLTGHYTP-RDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~~~s~-~e~~~~l~~~dvIil~vp 81 (503)
++++|+|+|+|.||+++|+.|.++|+.|.+++++... .+...+.+.. -....+. .+.+. .+|+||++||
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~-----d~~~~~~~~~~~~---~aD~VivavP 73 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVI-----DELTVAGLAEAAA---EADLVIVAVP 73 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcc-----cccccchhhhhcc---cCCEEEEecc
Confidence 3578999999999999999999999998777666544 3332222211 0111222 33333 3899999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCCh--hhhhcCC--cccCCC--CHHH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGE--EGARHGP--SLMPGG--SFEA 154 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~--~~a~~G~--~i~~gg--~~~a 154 (503)
-. .+.++++++.+.+++|.+|+|.+++.-...+.+.+...+.. +|++. |+.|.+ ..-..+. .++++. +.+.
T Consensus 74 i~-~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~ 151 (279)
T COG0287 74 IE-ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEW 151 (279)
T ss_pred HH-HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHH
Confidence 95 89999999999999999999999998877776666655544 89885 888873 3334455 334443 5678
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEeCCc
Q 010702 155 YNNIRDILQKVAAQVDDGPCVTYIGEG 181 (503)
Q Consensus 155 ~~~v~~ll~~ig~~~~~~~~v~~~G~~ 181 (503)
++++..+++.+| ..++++.+.
T Consensus 152 ~~~~~~~~~~~g------a~~v~~~~e 172 (279)
T COG0287 152 VEEVKRLWEALG------ARLVEMDAE 172 (279)
T ss_pred HHHHHHHHHHcC------CEEEEcChH
Confidence 999999999999 467777664
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.3e-12 Score=125.35 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=116.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++|+|||+|.||..+|..|.+.|++|.+||+++.. +...+. ++....+.++++. ..+|+||+|+|.. .
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~-------gv~~~~~~~e~~~--~~aDvVilavp~~-~ 104 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAEL-------GVSFFRDPDDFCE--EHPDVVLLCTSIL-S 104 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHc-------CCeeeCCHHHHhh--CCCCEEEEecCHH-H
Confidence 468999999999999999999999999999999642 222222 2445677887753 1289999999985 7
Q ss_pred HHHHHHHH-HhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChhh--hhcCC-cccC-------CCCHH
Q 010702 86 VDQTIAAL-SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEG--ARHGP-SLMP-------GGSFE 153 (503)
Q Consensus 86 v~~vl~~l-~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~~--a~~G~-~i~~-------gg~~~ 153 (503)
+.+++.++ .+.+.++.+|+|.+++.-...+.+.+.+.. +..|+. .|+.|.+.+ ...+. .+.. +.+++
T Consensus 105 ~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~-~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~ 183 (304)
T PLN02256 105 TEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE-EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREA 183 (304)
T ss_pred HHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC-CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHH
Confidence 89999888 677889999999999775555555544433 567887 488776543 22333 2221 33778
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEeCCcc
Q 010702 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGG 182 (503)
Q Consensus 154 a~~~v~~ll~~ig~~~~~~~~v~~~G~~G 182 (503)
+++.++++++.+| .+++.+.+..
T Consensus 184 ~~~~l~~l~~~lG------a~v~~~~~ee 206 (304)
T PLN02256 184 RCERFLDIFEEEG------CRMVEMSCEE 206 (304)
T ss_pred HHHHHHHHHHHCC------CEEEEeCHHH
Confidence 8999999999999 5677776643
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=124.68 Aligned_cols=165 Identities=18% Similarity=0.166 Sum_probs=112.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc-C--CCCee-eeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE-G--QLPLT-GHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-g--~~~i~-~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|||+||| +|.||+.||..|+++|++|.+++|++++.+.+.+..... + +.... ...+..+.++. +|+||+++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~---aDvVilavp 77 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKR---ADVVILAVP 77 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhc---CCEEEEECC
Confidence 5899997 899999999999999999999999999887776532110 0 00011 22355666666 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhh---------------HHHHHHHHHhcCccEec------ccCCCChhhh
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN---------------TERRIHEASQKGLLYLG------MGVSGGEEGA 140 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~---------------t~~~~~~l~~~gi~~i~------~pvsgg~~~a 140 (503)
.. .+.+++.++.+.+. +++|||+++....+ ++.+++.+.. +.+.+- +.+..+. ..
T Consensus 78 ~~-~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~-~~ 153 (219)
T TIGR01915 78 WD-HVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDV-DD 153 (219)
T ss_pred HH-HHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCC-CC
Confidence 84 78888888877664 58999999886531 1334444432 122332 2222221 11
Q ss_pred hcCC-cccCCCCHHHHHHHHHHHHHH-hcccCCCCcEEEeCCcchh
Q 010702 141 RHGP-SLMPGGSFEAYNNIRDILQKV-AAQVDDGPCVTYIGEGGSG 184 (503)
Q Consensus 141 ~~G~-~i~~gg~~~a~~~v~~ll~~i-g~~~~~~~~v~~~G~~G~g 184 (503)
..+. .+++|-++++.+.+..|.+.+ | ..++++|+.-.+
T Consensus 154 ~~~~~~~v~Gdd~~ak~~v~~L~~~~~G------~~~vd~G~l~~a 193 (219)
T TIGR01915 154 EVDCDVLVCGDDEEAKEVVAELAGRIDG------LRALDAGPLENA 193 (219)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHhcCC------CCcccCCchhhH
Confidence 2234 667777788899999999999 8 678888874433
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=120.90 Aligned_cols=166 Identities=16% Similarity=0.145 Sum_probs=113.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
||+|+|+|.|.||.+||++|+++||+|.+-+|+.++..+........ .+ ...+++++++. +|+||++||-. .
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~---~i-~~~~~~dA~~~---aDVVvLAVP~~-a 72 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGP---LI-TGGSNEDAAAL---ADVVVLAVPFE-A 72 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhcc---cc-ccCChHHHHhc---CCEEEEeccHH-H
Confidence 57899999999999999999999999999966655443333332211 23 34577777877 99999999985 7
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCCh---------------hhHHHHHHHHHhc----CccEecccCCCChhhhhcCC-c
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWY---------------LNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-S 145 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~---------------~~t~~~~~~l~~~----gi~~i~~pvsgg~~~a~~G~-~ 145 (503)
+.+++.++...+. |+||||.+|..+ +.++.+++.++.. .++-+.+...-......... .
T Consensus 73 ~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v 151 (211)
T COG2085 73 IPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDV 151 (211)
T ss_pred HHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeE
Confidence 8889999988775 999999999621 1233333333321 22333322221111111223 6
Q ss_pred ccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHH
Q 010702 146 LMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 186 (503)
Q Consensus 146 i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~ 186 (503)
+++|-|.++.+.+.++.+.+| -..+.+|+...++.
T Consensus 152 ~vagDD~~Ak~~v~~L~~~iG------~~~ld~G~L~~a~~ 186 (211)
T COG2085 152 LVAGDDAEAKAVVAELAEDIG------FRPLDAGPLENARI 186 (211)
T ss_pred EEecCcHHHHHHHHHHHHhcC------cceeeccccccccc
Confidence 778888899999999999999 67788888554443
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-12 Score=141.87 Aligned_cols=191 Identities=13% Similarity=0.226 Sum_probs=135.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-------hcccCCC----------CeeeeCCHHHHHh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQL----------PLTGHYTPRDFVL 68 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~~----------~i~~~~s~~e~~~ 68 (503)
..+|+|||+|.||..||..++.+|++|++||++++.++...+. ....|.+ ++++..+++++ +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 391 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF-E 391 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-c
Confidence 3579999999999999999999999999999999876543211 0011100 46777777543 4
Q ss_pred ccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEeccc-CCCChhhhhc
Q 010702 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMG-VSGGEEGARH 142 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~p-vsgg~~~a~~ 142 (503)
+ ||+||.++|++..++.-+ .++.+.++++.||...|++.+.+ ++++.+... |.||+..| .+.-.
T Consensus 392 ~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~~g~Hff~P~~~~~lV----- 461 (715)
T PRK11730 392 R---VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV----- 461 (715)
T ss_pred C---CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCCccEEEEecCCcccccceE-----
Confidence 4 999999999998887655 78888888888777666655433 344444332 66777643 22211
Q ss_pred CCcccCC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010702 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (503)
Q Consensus 143 G~~i~~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 220 (503)
-++.| .++++++.+..+++.+| +.++.+.+ ..|.. .|.+.+. .++|++.+.++ | .++++|
T Consensus 462 --Evv~g~~T~~~~~~~~~~~~~~lg------k~pv~v~d-~pGfv----~nRi~~~---~~~ea~~lv~~-G-a~~e~I 523 (715)
T PRK11730 462 --EVIRGEKTSDETIATVVAYASKMG------KTPIVVND-CPGFF----VNRVLFP---YFAGFSQLLRD-G-ADFRQI 523 (715)
T ss_pred --EeeCCCCCCHHHHHHHHHHHHHhC------CceEEecC-cCchh----HHHHHHH---HHHHHHHHHHc-C-CCHHHH
Confidence 23333 48899999999999999 88888854 55554 4666444 45899999875 5 899999
Q ss_pred HHHHH
Q 010702 221 AEIFD 225 (503)
Q Consensus 221 ~~~~~ 225 (503)
+.++.
T Consensus 524 D~a~~ 528 (715)
T PRK11730 524 DKVME 528 (715)
T ss_pred HHHHH
Confidence 99974
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.7e-12 Score=140.72 Aligned_cols=158 Identities=15% Similarity=0.208 Sum_probs=114.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
+.++|||||+|.||..+|+.|.+.|++|.+|||+... +...+. ++....++++++.. .+|+||+|||. .
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~-------Gv~~~~~~~el~~~--~aDvVILavP~-~ 436 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKL-------GVSYFSDADDLCEE--HPEVILLCTSI-L 436 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHc-------CCeEeCCHHHHHhc--CCCEEEECCCh-H
Confidence 3578999999999999999999999999999999653 333332 24556788887652 28999999997 5
Q ss_pred hHHHHHHHHHh-cCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe-cccCCCChhhhhcC---Cc-----ccCCCCHHH
Q 010702 85 PVDQTIAALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHG---PS-----LMPGGSFEA 154 (503)
Q Consensus 85 ~v~~vl~~l~~-~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~~a~~G---~~-----i~~gg~~~a 154 (503)
.+.++++++.. .+++|.+|+|++++..... +....+...++.|+ .+|+.|.+.+ ..| .. .+++++.+.
T Consensus 437 ~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~-~~~~~~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~ 514 (667)
T PLN02712 437 STEKVLKSLPFQRLKRSTLFVDVLSVKEFPR-NLFLQHLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRR 514 (667)
T ss_pred HHHHHHHHHHHhcCCCCcEEEECCCccHHHH-HHHHHhccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcch
Confidence 88999988875 5788999999999874333 33344444577888 5799988754 233 11 334555544
Q ss_pred HH---HHHHHHHHHhcccCCCCcEEEeCCc
Q 010702 155 YN---NIRDILQKVAAQVDDGPCVTYIGEG 181 (503)
Q Consensus 155 ~~---~v~~ll~~ig~~~~~~~~v~~~G~~ 181 (503)
.+ .+..+++.+| .+++.+.+.
T Consensus 515 ~~~~~~l~~l~~~lG------a~vv~ms~e 538 (667)
T PLN02712 515 VSRCDSFLDIFAREG------CRMVEMSCA 538 (667)
T ss_pred HHHHHHHHHHHHHcC------CEEEEeCHH
Confidence 44 4558888898 567777663
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.2e-12 Score=140.89 Aligned_cols=191 Identities=16% Similarity=0.248 Sum_probs=136.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccCCC----------CeeeeCCHHHHHh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQL----------PLTGHYTPRDFVL 68 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~i~~~~s~~e~~~ 68 (503)
..+|+|||+|.||..||..++.+|++|+++|++++.+++..+.. ...|.+ +++...+.+++ +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 391 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGF-D 391 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-c
Confidence 35799999999999999999999999999999998765433210 111100 46667777543 4
Q ss_pred ccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh----cCccEeccc-CCCChhhhhc
Q 010702 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMG-VSGGEEGARH 142 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~p-vsgg~~~a~~ 142 (503)
+ ||+||.+||++..++.-+ .++.+.++++.|+...|++.+.+ +++..+.. -|.||+..| ++.-.+
T Consensus 392 ~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~--~ia~~~~~p~r~ig~Hff~P~~~~~lvE---- 462 (714)
T TIGR02437 392 N---VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLVE---- 462 (714)
T ss_pred C---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCcccEEEEecCCCcccCceEe----
Confidence 4 999999999998887555 78888888888887666655433 34444432 267777643 222111
Q ss_pred CCcccCC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010702 143 GPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (503)
Q Consensus 143 G~~i~~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 220 (503)
++.| .++++++.+..++..++ +.++.+++ ..|.. .|.+.. ..+.|++.++++ | .++++|
T Consensus 463 ---vv~g~~Ts~~~~~~~~~~~~~lg------k~pv~v~d-~pGfi----~NRl~~---~~~~ea~~l~~e-G-~~~~~I 523 (714)
T TIGR02437 463 ---VIRGEKSSDETIATVVAYASKMG------KTPIVVND-CPGFF----VNRVLF---PYFGGFSKLLRD-G-ADFVRI 523 (714)
T ss_pred ---ecCCCCCCHHHHHHHHHHHHHcC------CEEEEeCC-cccch----HHHHHH---HHHHHHHHHHHC-C-CCHHHH
Confidence 2333 47899999999999999 88888864 55654 466644 445999999875 6 899999
Q ss_pred HHHHH
Q 010702 221 AEIFD 225 (503)
Q Consensus 221 ~~~~~ 225 (503)
+.++.
T Consensus 524 D~a~~ 528 (714)
T TIGR02437 524 DKVME 528 (714)
T ss_pred HHHHH
Confidence 99974
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.3e-12 Score=141.93 Aligned_cols=191 Identities=16% Similarity=0.224 Sum_probs=136.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccCCC----------CeeeeCCHHHHHhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQL----------PLTGHYTPRDFVLS 69 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~i~~~~s~~e~~~~ 69 (503)
.+|+|||+|.||..||..++.+|++|.++|++++.+++..+.. ...|.+ +++.+.+++++ ++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGF-KN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-cc
Confidence 5799999999999999999999999999999998766533210 011100 46677777643 44
Q ss_pred cCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh----cCccEeccc-CCCChhhhhcC
Q 010702 70 IQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMG-VSGGEEGARHG 143 (503)
Q Consensus 70 l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~p-vsgg~~~a~~G 143 (503)
||+||.+||++..++.-+ .++.+.++++.|+...|++.+.+ +++..+.. -|.||+..+ ++.-.+
T Consensus 415 ---aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~ig~Hff~P~~~m~LvE----- 484 (737)
T TIGR02441 415 ---ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIK--DIAAVSSRPEKVIGMHYFSPVDKMQLLE----- 484 (737)
T ss_pred ---CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCccceEEEeccCCcccCceEE-----
Confidence 999999999998887655 78888888888887655554433 44444432 267777643 221111
Q ss_pred CcccC--CCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 010702 144 PSLMP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELA 221 (503)
Q Consensus 144 ~~i~~--gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~ 221 (503)
++. ..++++++.+..+++.++ +.++.+++ ..|.. -|.+. ...+.|++.++++ | +++++|+
T Consensus 485 --vv~g~~Ts~~~~~~~~~~~~~lg------k~pv~v~d-~pGFi----~NRi~---~~~~~ea~~lv~e-G-v~~~~ID 546 (737)
T TIGR02441 485 --IITHDGTSKDTLASAVAVGLKQG------KVVIVVKD-GPGFY----TTRCL---GPMLAEVIRLLQE-G-VDPKKLD 546 (737)
T ss_pred --EeCCCCCCHHHHHHHHHHHHHCC------CeEEEECC-cCCch----HHHHH---HHHHHHHHHHHHc-C-CCHHHHH
Confidence 233 358899999999999999 88888864 55554 45554 4566999999876 6 8999999
Q ss_pred HHHHH
Q 010702 222 EIFDE 226 (503)
Q Consensus 222 ~~~~~ 226 (503)
.++..
T Consensus 547 ~a~~~ 551 (737)
T TIGR02441 547 KLTTK 551 (737)
T ss_pred HHHHH
Confidence 98643
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.8e-12 Score=139.43 Aligned_cols=191 Identities=17% Similarity=0.243 Sum_probs=134.3
Q ss_pred CCcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHhh-------cccCC----------CCeeeeCCHHHHH
Q 010702 6 LSRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRA-------HREGQ----------LPLTGHYTPRDFV 67 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~----------~~i~~~~s~~e~~ 67 (503)
.++|+|||+|.||..||..++ .+|++|++||++++.++...+.. ...+. -+++..+++++ +
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 382 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRG-F 382 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHH-h
Confidence 357999999999999999998 58999999999998655432110 00000 04667777754 3
Q ss_pred hccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccC-CCChhhhh
Q 010702 68 LSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGV-SGGEEGAR 141 (503)
Q Consensus 68 ~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pv-sgg~~~a~ 141 (503)
++ ||+||.++|++.+++.-+ .++.+.+++++|+...|++.+.+ ++++.+... |.||+..|- +.-.
T Consensus 383 ~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~~g~HffnP~~~~~lV---- 453 (699)
T TIGR02440 383 KD---VDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIG--QIAAAASRPENVIGLHYFSPVEKMPLV---- 453 (699)
T ss_pred cc---CCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--HHHHhcCCcccEEEEecCCccccCceE----
Confidence 44 999999999998887654 78888888887777655554433 344444322 667776542 2111
Q ss_pred cCCcccC--CCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010702 142 HGPSLMP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (503)
Q Consensus 142 ~G~~i~~--gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 219 (503)
-++. ..++++++.+..+++.+| +.++.+.+ ..|..+ |.+. ...++|++.++++ | +++++
T Consensus 454 ---Evv~g~~T~~~~~~~~~~~~~~~g------k~pv~v~d-~pGfi~----nRl~---~~~~~Ea~~l~~~-G-~~~~d 514 (699)
T TIGR02440 454 ---EVIPHAGTSEQTIATTVALAKKQG------KTPIVVAD-KAGFYV----NRIL---APYMNEAARLLLE-G-EPVEH 514 (699)
T ss_pred ---EEeCCCCCCHHHHHHHHHHHHHcC------CeEEEEcc-ccchHH----HHHH---HHHHHHHHHHHHC-C-CCHHH
Confidence 1333 358899999999999999 88888854 556554 5554 4556999999884 6 79999
Q ss_pred HHHHHH
Q 010702 220 LAEIFD 225 (503)
Q Consensus 220 i~~~~~ 225 (503)
|+.++.
T Consensus 515 ID~a~~ 520 (699)
T TIGR02440 515 IDKALV 520 (699)
T ss_pred HHHHHH
Confidence 999974
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.8e-13 Score=139.72 Aligned_cols=118 Identities=16% Similarity=0.313 Sum_probs=100.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HhCCCcchhhhHHHHHHHHhcCC-CCCCC
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARI---WKGGCIIRAVFLDRIKKAYQRNP-NLASL 400 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~i---W~~Gcii~s~lL~~i~~~~~~~~-~~~~l 400 (503)
.++||++||+||+|+|+.|++++|+|.+++++. ++|.+++.++ |+.| .++|+++++...++..++ ..+..
T Consensus 181 ~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~-----Gld~~~l~~vf~~~~~g-~~~S~llei~~~~l~~~d~~~~~f 254 (493)
T PLN02350 181 GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVG-----GLSNEELAEVFAEWNKG-ELESFLIEITADIFSVKDDKGDGY 254 (493)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHcCC-CccchHHHHHHHHHhhcCCCCCCc
Confidence 489999999999999999999999999999542 3898787777 9988 789999999888876553 22356
Q ss_pred cchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 401 VVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 401 l~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
++|...++..+|+|| ||+++.|.+.|+|+|.|++++. |.++++.+|..
T Consensus 255 ~l~~i~Kd~~~kGTg--~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~ 304 (493)
T PLN02350 255 LVDKILDKTGMKGTG--KWTVQQAAELSVAAPTIAASLDARYLSGLKEERVA 304 (493)
T ss_pred hHHHHHhhhcccchH--HHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHH
Confidence 777777788889999 9999999999999999999998 88888888765
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-12 Score=120.03 Aligned_cols=153 Identities=18% Similarity=0.318 Sum_probs=101.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-------ccCCC----------CeeeeCCHHHHHhcc
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REGQL----------PLTGHYTPRDFVLSI 70 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~~----------~i~~~~s~~e~~~~l 70 (503)
||+|||+|.||.++|..++.+|++|.+||++++.++...+.-. ..+.+ ++...+++++++ +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~- 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D- 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h-
Confidence 6999999999999999999999999999999987654432210 01111 578888998887 5
Q ss_pred CCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh--c--CccEecccCC-CChhhhhcCC
Q 010702 71 QRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--K--GLLYLGMGVS-GGEEGARHGP 144 (503)
Q Consensus 71 ~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~--gi~~i~~pvs-gg~~~a~~G~ 144 (503)
+|+||.++|+...++.-+ .+|.+.++++.+|...|++.+.. +++..+.. + |+||+..|-. .-.
T Consensus 79 --adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~--~la~~~~~p~R~ig~Hf~~P~~~~~lV------- 147 (180)
T PF02737_consen 79 --ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSIS--ELAAALSRPERFIGMHFFNPPHLMPLV------- 147 (180)
T ss_dssp --ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HH--HHHTTSSTGGGEEEEEE-SSTTT--EE-------
T ss_pred --hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHH--HHHhccCcCceEEEEecccccccCceE-------
Confidence 999999999998887655 78888888888887776665433 34443322 2 6677764421 111
Q ss_pred cccC--CCCHHHHHHHHHHHHHHhcccCCCCcEEEeC
Q 010702 145 SLMP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179 (503)
Q Consensus 145 ~i~~--gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G 179 (503)
-++. ..++++++.+..+++.+| +.++.+.
T Consensus 148 Evv~~~~T~~~~~~~~~~~~~~~g------k~pv~v~ 178 (180)
T PF02737_consen 148 EVVPGPKTSPETVDRVRALLRSLG------KTPVVVK 178 (180)
T ss_dssp EEEE-TTS-HHHHHHHHHHHHHTT-------EEEEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHHCC------CEEEEec
Confidence 1233 358899999999999999 7777663
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-11 Score=117.64 Aligned_cols=193 Identities=15% Similarity=0.091 Sum_probs=126.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC---c-EEEEeC-ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF---P-ISVYNR-TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~---~-V~v~dr-~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
+||+|||+|.||.+++..|+++|+ + +.+++| ++++.+.+.+.. ++..+.+.++++++ +|+||+++|
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~DiViiavp 75 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------NVSTTTDWKQHVTS---VDTIVLAMP 75 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------CcEEeCChHHHHhc---CCEEEEecC
Confidence 589999999999999999998873 3 777887 467777766542 24566788888876 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe-cccCCCChhhhhcCC-c--ccCCCCHHHHHH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGARHGP-S--LMPGGSFEAYNN 157 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~~a~~G~-~--i~~gg~~~a~~~ 157 (503)
+. ..+++++++.+.++ +++||+++.+..... +.+.+.. +...+ -+|-.. .....|. . .-..++++..+.
T Consensus 76 ~~-~~~~v~~~l~~~~~-~~~vis~~~gi~~~~--l~~~~~~-~~~v~r~~Pn~a--~~v~~g~~~~~~~~~~~~~~~~~ 148 (245)
T PRK07634 76 PS-AHEELLAELSPLLS-NQLVVTVAAGIGPSY--LEERLPK-GTPVAWIMPNTA--AEIGKSISLYTMGQSVNETHKET 148 (245)
T ss_pred HH-HHHHHHHHHHhhcc-CCEEEEECCCCCHHH--HHHHcCC-CCeEEEECCcHH--HHHhcCCeEEeeCCCCCHHHHHH
Confidence 85 78999999888775 679999888764443 3333322 22222 234222 2333443 2 223568899999
Q ss_pred HHHHHHHHhcccCCCCcEEEeCCc--chhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010702 158 IRDILQKVAAQVDDGPCVTYIGEG--GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDE 226 (503)
Q Consensus 158 v~~ll~~ig~~~~~~~~v~~~G~~--G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~ 226 (503)
++.+|+.+| .++ ++.+. -..+.+--..-++.+..+..+.++ +.+.| ++.++..+++.+
T Consensus 149 v~~lf~~~G------~~~-~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~G-l~~~~a~~~~~~ 208 (245)
T PRK07634 149 LQLILKGIG------TSQ-LCTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYG-VDEETAKHLVIQ 208 (245)
T ss_pred HHHHHHhCC------CEE-EECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 999999999 333 45431 111111112222333344444444 56778 999998888743
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-10 Score=112.95 Aligned_cols=184 Identities=21% Similarity=0.216 Sum_probs=130.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
+++|||||.|+||.+|+..|.++| .+|++.||++++.+.+.+.. ++..+.+..+++.. +|+||++|+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~------g~~~~~~~~~~~~~---advv~LavK 71 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY------GVVTTTDNQEAVEE---ADVVFLAVK 71 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc------CCcccCcHHHHHhh---CCEEEEEeC
Confidence 468999999999999999999999 68999999999988676653 22336777788887 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChhhhhcCC-cccCC--CCHHHHHH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~~a~~G~-~i~~g--g~~~a~~~ 157 (503)
+ ..+++++.++.+ ..++++||....+.+ ...+...+. +.+.+- +|-. +.....|. .+..+ .+++..+.
T Consensus 72 P-q~~~~vl~~l~~-~~~~~lvISiaAGv~--~~~l~~~l~--~~~vvR~MPNt--~a~vg~g~t~i~~~~~~~~~~~~~ 143 (266)
T COG0345 72 P-QDLEEVLSKLKP-LTKDKLVISIAAGVS--IETLERLLG--GLRVVRVMPNT--PALVGAGVTAISANANVSEEDKAF 143 (266)
T ss_pred h-HhHHHHHHHhhc-ccCCCEEEEEeCCCC--HHHHHHHcC--CCceEEeCCCh--HHHHcCcceeeecCccCCHHHHHH
Confidence 8 589999999998 778999998877653 334444443 333333 3422 22334555 33333 37788889
Q ss_pred HHHHHHHHhcccCCCCcEEEeCCc---------chhHHHHhHHHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHHHH
Q 010702 158 IRDILQKVAAQVDDGPCVTYIGEG---------GSGNFVKMVHNGIEYGDMQLISEAYDVL-KHVGGLSNAELAEIFD 225 (503)
Q Consensus 158 v~~ll~~ig~~~~~~~~v~~~G~~---------G~g~~vK~v~N~i~~~~~~~~~Ea~~l~-~~~g~~~~~~i~~~~~ 225 (503)
+..+|+.+| .++++.+. |+|-. .+..+.|++.-+ .+.| ++.++..++..
T Consensus 144 v~~l~~~~G-------~v~~v~E~~~da~TaisGSgPA-----------yv~~~iEal~~agv~~G-l~~~~A~~l~~ 202 (266)
T COG0345 144 VEALLSAVG-------KVVEVEESLMDAVTALSGSGPA-----------YVFLFIEALADAGVRLG-LPREEARELAA 202 (266)
T ss_pred HHHHHHhcC-------CeEEechHHhhHHHHHhcCCHH-----------HHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 999999999 46666532 33322 233444554443 4667 99999888764
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-12 Score=112.94 Aligned_cols=103 Identities=20% Similarity=0.296 Sum_probs=87.3
Q ss_pred chhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhh-ccccccCCCchhHHHHH
Q 010702 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI-FKVKDEYGEGELVDKIL 260 (503)
Q Consensus 182 G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~-l~~~~~~~~~~~ld~i~ 260 (503)
|+|+.+|+++|.+..+.+.+++|++.++++.| +|++++.+++ +.+.+.|+.++.+.+. +.. ++|.++|.++.+.
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~G-ld~~~~~~vl---~~~~~~s~~~~~~~~~~~~~-~~~~~~f~l~~~~ 75 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAG-LDPEQLLDVL---SAGSGGSWMLKNRAPRMILN-GDFDPGFSLDLAR 75 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHH---HTSTTHBHHHHHHHHHHHHT-TTTCSSSBHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH---ccCCcCchHHHhhhhhhhhc-ccCCccchhHhhc
Confidence 78999999999999999999999999999999 9999999998 5788899999988763 443 6688999999999
Q ss_pred hhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010702 261 DKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (503)
Q Consensus 261 ~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s 296 (503)
||+. ++++.|.+.|+|+|+...+ .+.|..
T Consensus 76 KDl~------l~~~~a~~~g~~~p~~~~~-~~~~~~ 104 (122)
T PF14833_consen 76 KDLR------LALDLAKEAGVPLPLGSAA-RQLYQA 104 (122)
T ss_dssp HHHH------HHHHHHHHTT---HHHHHH-HHHHHH
T ss_pred cHHH------HHHHHHHHcCCCCHHHHHH-HHHHHH
Confidence 9996 9999999999999999876 444443
|
... |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=137.39 Aligned_cols=191 Identities=19% Similarity=0.273 Sum_probs=134.5
Q ss_pred CCcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHh-------hcccCCC----------CeeeeCCHHHHH
Q 010702 6 LSRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDR-------AHREGQL----------PLTGHYTPRDFV 67 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~~----------~i~~~~s~~e~~ 67 (503)
..+|+|||+|.||.+||..++ .+|++|++||++++.++...+. ....+.+ +++.+++.++ +
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 387 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRG-F 387 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHH-h
Confidence 357999999999999999999 8899999999999865543211 0000000 4666777643 3
Q ss_pred hccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccC-CCChhhhh
Q 010702 68 LSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGV-SGGEEGAR 141 (503)
Q Consensus 68 ~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pv-sgg~~~a~ 141 (503)
++ ||+||.++|++..++.-+ .++.+.++++.|+...|++.+.+ ++++.+... |.||+..|- +.-.
T Consensus 388 ~~---aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~ig~Hff~P~~~~~lV---- 458 (708)
T PRK11154 388 KH---ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIG--QIAAAAARPEQVIGLHYFSPVEKMPLV---- 458 (708)
T ss_pred cc---CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHHhcCcccceEEEecCCccccCceE----
Confidence 44 999999999998887655 78888888888887666665433 344444322 566665431 1111
Q ss_pred cCCcccC--CCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010702 142 HGPSLMP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (503)
Q Consensus 142 ~G~~i~~--gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 219 (503)
-+++ ..++++++.+..+++.++ +.++.+.+ ..|..+ |.+. ..+++|++.++++ | +++++
T Consensus 459 ---Evv~g~~Ts~~~~~~~~~~~~~~g------k~pv~v~d-~pGfi~----nRl~---~~~~~EA~~lv~e-G-v~~~d 519 (708)
T PRK11154 459 ---EVIPHAKTSAETIATTVALAKKQG------KTPIVVRD-GAGFYV----NRIL---APYINEAARLLLE-G-EPIEH 519 (708)
T ss_pred ---EEECCCCCCHHHHHHHHHHHHHcC------CceEEEec-cCcHHH----HHHH---HHHHHHHHHHHHc-C-CCHHH
Confidence 2333 358999999999999999 77888854 556554 5554 4555999999986 6 89999
Q ss_pred HHHHHH
Q 010702 220 LAEIFD 225 (503)
Q Consensus 220 i~~~~~ 225 (503)
|+.++.
T Consensus 520 ID~a~~ 525 (708)
T PRK11154 520 IDAALV 525 (708)
T ss_pred HHHHHH
Confidence 999874
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-12 Score=107.33 Aligned_cols=90 Identities=20% Similarity=0.337 Sum_probs=76.5
Q ss_pred cEEEEcccHHHHHHHHHHHhCC---CcEEEE-eCChhHHHHHHHhhcccCCCCeeeeC-CHHHHHhccCCCcEEEEecCC
Q 010702 8 RIGLAGLAVMGQNLALNVAEKG---FPISVY-NRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G---~~V~v~-dr~~~~~~~l~~~~~~~g~~~i~~~~-s~~e~~~~l~~~dvIil~vp~ 82 (503)
||||||.|.||.+|++.|.++| ++|.++ +|++++.+++.++.. +.... +..++++. +|+||+|||+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~------~~~~~~~~~~~~~~---advvilav~p 71 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG------VQATADDNEEAAQE---ADVVILAVKP 71 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT------TEEESEEHHHHHHH---TSEEEE-S-G
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc------cccccCChHHhhcc---CCEEEEEECH
Confidence 6999999999999999999999 999955 999999999887642 34445 78999998 9999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
..+.+++.++ +...++++|||..+
T Consensus 72 -~~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 72 -QQLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp -GGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred -HHHHHHHHHH-hhccCCCEEEEeCC
Confidence 4899999999 77779999999875
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=124.30 Aligned_cols=255 Identities=14% Similarity=0.112 Sum_probs=150.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-cc---cCCC-Ceee-eCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-HR---EGQL-PLTG-HYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-~~---~g~~-~i~~-~~s~~e~~~~l~~~dvIil~ 79 (503)
.|||+|||+|.||+-+|..|++.|++|++++|+.+.++.+.+.+ .. .+.. .... ..+. +.++..|+||+|
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~----~~~~~~D~viv~ 77 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETA----DAAEPIHRLLLA 77 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCc----ccccccCEEEEE
Confidence 47999999999999999999999999999999988888776542 11 0100 0000 1111 112348999999
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccCCC-ChhhhhcCC-cccCCC-CH
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSG-GEEGARHGP-SLMPGG-SF 152 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsg-g~~~a~~G~-~i~~gg-~~ 152 (503)
++.. ++++++..+.+.+.++++|+-+-|+... .+.+.+.+... |+.++++...+ |.. ...|. .+..|. +.
T Consensus 78 vK~~-~~~~al~~l~~~l~~~t~vv~lQNGv~~-~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v-~~~~~g~~~~G~~~~ 154 (305)
T PRK05708 78 CKAY-DAEPAVASLAHRLAPGAELLLLQNGLGS-QDAVAARVPHARCIFASSTEGAFRDGDWRV-VFAGHGFTWLGDPRN 154 (305)
T ss_pred CCHH-hHHHHHHHHHhhCCCCCEEEEEeCCCCC-HHHHHHhCCCCcEEEEEeeeceecCCCCEE-EEeceEEEEEcCCCC
Confidence 9995 7889999999999999999999888642 22344444321 22233222111 111 11122 122332 22
Q ss_pred HHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHH------------------HHHHHHHHHHHHHHHHhCC
Q 010702 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIE------------------YGDMQLISEAYDVLKHVGG 214 (503)
Q Consensus 153 ~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~------------------~~~~~~~~Ea~~l~~~~g~ 214 (503)
+..+++.++|...+. .+.+..+.-...+-|++-|... ....+++.|++.++++.|
T Consensus 155 ~~~~~l~~~l~~ag~------~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G- 227 (305)
T PRK05708 155 PTAPAWLDDLREAGI------PHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCG- 227 (305)
T ss_pred cchHHHHHHHHhcCC------CCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcC-
Confidence 334556666665552 2222223334445555544310 134577899999999988
Q ss_pred CC--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 215 LS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 215 ~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
++ .+.+.+.+.......... -.++..++.+.+. ..+|.+.. ..++.|+++|+|+|.....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~-~sSM~qD~~~gR~-----tEid~i~G---------~vvr~a~~~Gv~~P~~~~l 289 (305)
T PRK05708 228 QPAAAANLHEEVQRVIQATAAN-YSSMYQDVRAGRR-----TEISYLLG---------YACRAADRHGLPLPRLQHL 289 (305)
T ss_pred CCccHHHHHHHHHHHHHhccCC-CcHHHHHHHcCCc-----eeehhhhh---------HHHHHHHHcCCCCchHHHH
Confidence 75 233433332211111111 2344455554332 46777765 5789999999999988764
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-10 Score=115.17 Aligned_cols=147 Identities=12% Similarity=0.136 Sum_probs=104.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G----~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|++|+|||+|.||.+++..|.++| ++|.+|+|++ ++.+.+..... .+....+..+++.. +|+||+|+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~-----~~~~~~~~~e~~~~---aDvVilav 72 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYP-----TVELADNEAEIFTK---CDHSFICV 72 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcC-----CeEEeCCHHHHHhh---CCEEEEec
Confidence 368999999999999999999998 7899999875 44444443221 13456778887776 99999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChhhhhcCC-cccCC--CCHHHHH
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPG--GSFEAYN 156 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~~a~~G~-~i~~g--g~~~a~~ 156 (503)
|+ ..+.+++.++.+.+.++.+||...++.... ++.+.+.. ...+- +|-. +.....|. .+..+ -+++..+
T Consensus 73 pp-~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~--~l~~~~~~--~~vvR~MPN~--~~~~g~g~t~~~~~~~~~~~~~~ 145 (277)
T PRK06928 73 PP-LAVLPLLKDCAPVLTPDRHVVSIAAGVSLD--DLLEITPG--LQVSRLIPSL--TSAVGVGTSLVAHAETVNEANKS 145 (277)
T ss_pred CH-HHHHHHHHHHHhhcCCCCEEEEECCCCCHH--HHHHHcCC--CCEEEEeCcc--HHHHhhhcEEEecCCCCCHHHHH
Confidence 97 579999999999888888999988876433 44444432 12222 3322 23345566 33333 3567788
Q ss_pred HHHHHHHHHhc
Q 010702 157 NIRDILQKVAA 167 (503)
Q Consensus 157 ~v~~ll~~ig~ 167 (503)
.++.+|+.+|.
T Consensus 146 ~v~~l~~~~G~ 156 (277)
T PRK06928 146 RLEETLSHFSH 156 (277)
T ss_pred HHHHHHHhCCC
Confidence 99999999994
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-11 Score=135.80 Aligned_cols=160 Identities=14% Similarity=0.170 Sum_probs=121.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|+|||+|.||.++++.|.++| ++|.+||+++++.+.+.+.+.. .....+..+++++ +|+||+|+|..
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~-----~~~~~~~~~~~~~---aDvVilavp~~- 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVI-----DRGEEDLAEAVSG---ADVIVLAVPVL- 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCC-----CcccCCHHHHhcC---CCEEEECCCHH-
Confidence 58999999999999999999999 4799999999987776654321 1134466676665 99999999984
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChh-hh-------hcCC--ccc--CCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEE-GA-------RHGP--SLM--PGGS 151 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~-~a-------~~G~--~i~--~gg~ 151 (503)
.+.++++.+.+.++++.+|+|++++.......+.+.+....++|+. .|++|++. +. ..+. .+. .+++
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~ 154 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETD 154 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCC
Confidence 7899999999988899999999998876666666655444567764 68887653 11 1222 223 3467
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcEEEeCCc
Q 010702 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181 (503)
Q Consensus 152 ~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~ 181 (503)
++.++.++++|+.+| ..++++.+.
T Consensus 155 ~~~~~~~~~l~~~~G------~~~~~~~~~ 178 (735)
T PRK14806 155 PAALARVDRLWRAVG------ADVLHMDVA 178 (735)
T ss_pred HHHHHHHHHHHHHcC------CEEEEcCHH
Confidence 888999999999999 567777653
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.5e-12 Score=114.56 Aligned_cols=99 Identities=17% Similarity=0.323 Sum_probs=81.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCC-------CeeeeCCHHHHHhccCCCcEEEEec
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL-------PLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~-------~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
||+|||.|.||.++|..|+++|++|++|.|+++.++.+.+.+.+...+ ++...+++++++++ +|+|+++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~---ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED---ADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT----SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc---ccEEEecc
Confidence 699999999999999999999999999999999999888765421111 56788899999887 99999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
|. ...+++++++.++++++.+||.++.+.
T Consensus 78 Ps-~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PS-QAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -G-GGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cH-HHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 99 478999999999999999999988775
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.3e-11 Score=119.15 Aligned_cols=194 Identities=13% Similarity=0.086 Sum_probs=126.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.++|||||+|.||.++|++|.+.|++|.+++++.++........ ++.. .+++++++. +|+|+++||+. .
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~------G~~~-~s~~eaa~~---ADVVvLaVPd~-~ 85 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEAD------GFEV-LTVAEAAKW---ADVIMILLPDE-V 85 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHC------CCee-CCHHHHHhc---CCEEEEcCCHH-H
Confidence 36899999999999999999999999999988765544443321 2333 388888887 99999999986 5
Q ss_pred HHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChhh-----hhcCC-ccc-CCCC--HHH
Q 010702 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEG-----ARHGP-SLM-PGGS--FEA 154 (503)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~~-----a~~G~-~i~-~gg~--~~a 154 (503)
...++ +++.+.+++|.+|+.+....... . ......++..+- +|-..+... ...|. .++ +..+ .++
T Consensus 86 ~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~---~-~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a 161 (330)
T PRK05479 86 QAEVYEEEIEPNLKEGAALAFAHGFNIHF---G-QIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNA 161 (330)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCChhh---c-eeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHH
Confidence 58888 78999999999986665533211 1 111222343333 354444311 12344 444 5555 889
Q ss_pred HHHHHHHHHHHhcccCCCCcEE--EeCCcc-hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010702 155 YNNIRDILQKVAAQVDDGPCVT--YIGEGG-SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (503)
Q Consensus 155 ~~~v~~ll~~ig~~~~~~~~v~--~~G~~G-~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 220 (503)
.+.+..++..+|+..-+ ++ .+.++- .--|=- +..+..+...++..++.++...| ++|+..
T Consensus 162 ~~~a~~l~~aiG~~~~g---~~~ttf~~e~~~dl~ge--q~vl~gg~~~l~~~~~e~l~eaG-~~pe~A 224 (330)
T PRK05479 162 KDLALAYAKGIGGTRAG---VIETTFKEETETDLFGE--QAVLCGGLTELIKAGFETLVEAG-YQPEMA 224 (330)
T ss_pred HHHHHHHHHHcCCCccc---eeeeeecccccccchhh--HHHHhhHHHHHHHHHHHHHHHcC-CCHHHH
Confidence 99999999999953110 11 111110 000000 12233456778888999999999 999864
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6e-10 Score=110.12 Aligned_cols=231 Identities=12% Similarity=0.084 Sum_probs=136.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|||+|||+|.||.+|+..|.++|. ++++++|++++. ......++.++++. +|+||+|+|+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~---~D~Vilavkp 67 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-------------PFVYLQSNEELAKT---CDIIVLAVKP 67 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-------------CeEEeCChHHHHHh---CCEEEEEeCH
Confidence 689999999999999999999872 499999986541 12345677887776 9999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh--cCccEecccCCCChhhhhcCC-cccCC--CCHHHHHH
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLGMGVSGGEEGARHGP-SLMPG--GSFEAYNN 157 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~gi~~i~~pvsgg~~~a~~G~-~i~~g--g~~~a~~~ 157 (503)
..+++++.++.+.+.++.+|.++++......+ +.+.. +-++++. +.+.....|. .+.++ .+++..+.
T Consensus 68 -~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~---~~~~~~~~vvr~mP----n~p~~~g~g~t~i~~~~~~~~~~~~~ 139 (260)
T PTZ00431 68 -DLAGKVLLEIKPYLGSKLLISICGGLNLKTLE---EMVGVEAKIVRVMP----NTPSLVGQGSLVFCANNNVDSTDKKK 139 (260)
T ss_pred -HHHHHHHHHHHhhccCCEEEEEeCCccHHHHH---HHcCCCCeEEEECC----CchhHhcceeEEEEeCCCCCHHHHHH
Confidence 58999999999888766666666666533332 22221 1123222 1123334455 33332 35677889
Q ss_pred HHHHHHHHhcccCCCCcEEEeCCc--chhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchh
Q 010702 158 IRDILQKVAAQVDDGPCVTYIGEG--GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESF 235 (503)
Q Consensus 158 v~~ll~~ig~~~~~~~~v~~~G~~--G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~ 235 (503)
++.+|+.+| .++.+.+. -....+-=+--++.+.++..+.++ +.+.| ++.++..++..+.-.|
T Consensus 140 v~~l~~~~G-------~~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~G-l~~~~a~~l~~~~~~G----- 203 (260)
T PTZ00431 140 VIDIFSACG-------IIQEIKEKDMDIATAISGCGPAYVFLFIESLIDA---GVKNG-LNRDVSKNLVLQTILG----- 203 (260)
T ss_pred HHHHHHhCC-------cEEEEChHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHHHHHH-----
Confidence 999999999 34444331 000000001123334444555554 45667 9999988886432222
Q ss_pred HHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcch
Q 010702 236 LVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPT 285 (503)
Q Consensus 236 l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~ 285 (503)
+...+.+ .+.+|. +...+....-||..-.+..-.+.|+.--+
T Consensus 204 ----~a~ll~~-~~~~~~---~l~~~v~spgG~T~~gl~~le~~g~~~~~ 245 (260)
T PTZ00431 204 ----SVHMVKA-SDQPVQ---QLKDDVCSPGGITIVGLYTLEKHAFKYTV 245 (260)
T ss_pred ----HHHHHHh-cCCCHH---HHHHhCCCCChHHHHHHHHHHHCChHHHH
Confidence 2233332 112222 22222333445655555555667776433
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-10 Score=128.75 Aligned_cols=158 Identities=10% Similarity=0.144 Sum_probs=111.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++|||||+|.||..+|..|.+.|++|.+|||+... +...+. ++..+.++++++.. .+|+||+|||. ..
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~-------Gv~~~~d~~e~~~~--~aDvViLavP~-~~ 120 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSL-------GVSFFLDPHDLCER--HPDVILLCTSI-IS 120 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHc-------CCEEeCCHHHHhhc--CCCEEEEcCCH-HH
Confidence 468999999999999999999999999999998553 332222 24557788886531 28999999998 47
Q ss_pred HHHHHHHHH-hcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChhh--hhcCC-cccC----CCCH---H
Q 010702 86 VDQTIAALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEG--ARHGP-SLMP----GGSF---E 153 (503)
Q Consensus 86 v~~vl~~l~-~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~~--a~~G~-~i~~----gg~~---~ 153 (503)
+.++++++. +.++++.+|+|++++.....+.+...+ ..+..|+. .|+.|.+.. ...+. .++. +.++ +
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l-~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~ 199 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYL-PEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVS 199 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhc-CCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHH
Confidence 899998885 678899999999988754444444433 33667887 488876631 12222 3333 2222 3
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEeCCc
Q 010702 154 AYNNIRDILQKVAAQVDDGPCVTYIGEG 181 (503)
Q Consensus 154 a~~~v~~ll~~ig~~~~~~~~v~~~G~~ 181 (503)
.++.++++++.+| .+++.+.+.
T Consensus 200 ~~~~l~~l~~~lG------a~v~~ms~e 221 (667)
T PLN02712 200 RCKSFLEVFEREG------CKMVEMSCT 221 (667)
T ss_pred HHHHHHHHHHHcC------CEEEEeCHH
Confidence 4566779999999 456666553
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.4e-11 Score=120.88 Aligned_cols=145 Identities=10% Similarity=0.083 Sum_probs=110.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
.++|+|||+ |.||.++|+.|.+. |++|++||++.+ ...++++++.+ +|+||+|+|..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------------------~~~~~~~~v~~---aDlVilavPv~ 62 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------------------GSLDPATLLQR---ADVLIFSAPIR 62 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------------------ccCCHHHHhcC---CCEEEEeCCHH
Confidence 368999999 99999999999964 899999998511 13466777776 99999999995
Q ss_pred hhHHHHHHHHHhc---CCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCChh-hhhcCC-ccc-CCCCHHHHH
Q 010702 84 SPVDQTIAALSEH---MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEE-GARHGP-SLM-PGGSFEAYN 156 (503)
Q Consensus 84 ~~v~~vl~~l~~~---l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~~-~a~~G~-~i~-~gg~~~a~~ 156 (503)
.+.+++.++.+. ++++.+|+|.++++....+.. ...+..|++. |+.|.+. +...|. .++ ++...+..+
T Consensus 63 -~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~ 137 (370)
T PRK08818 63 -HTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM----LASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSP 137 (370)
T ss_pred -HHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH----HhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHH
Confidence 788999998875 789999999999885444433 2345679985 8888753 334555 444 455556678
Q ss_pred HHHHHHHHHhcccCCCCcEEEeCCcc
Q 010702 157 NIRDILQKVAAQVDDGPCVTYIGEGG 182 (503)
Q Consensus 157 ~v~~ll~~ig~~~~~~~~v~~~G~~G 182 (503)
.++.+++.+| ..++.+.+.-
T Consensus 138 ~v~~l~~~~G------a~v~~~~aee 157 (370)
T PRK08818 138 WVQSLCSALQ------AECVYATPEH 157 (370)
T ss_pred HHHHHHHHcC------CEEEEcCHHH
Confidence 8999999999 5677776643
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-10 Score=114.45 Aligned_cols=254 Identities=16% Similarity=0.167 Sum_probs=158.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC-CCC----eeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG-QLP----LTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g-~~~----i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|||.|+|+|.||+-++..|+++|++|+++.|++. ++++.+.|..-- ..+ .....+..+ .+..+|+||++|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~---~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAE---ALGPADLVIVTVK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChh---hcCCCCEEEEEec
Confidence 6899999999999999999999999999999876 788887653210 001 011111112 2234999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccCCC--ChhhhhcCC---cccCCCCH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSG--GEEGARHGP---SLMPGGSF 152 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsg--g~~~a~~G~---~i~~gg~~ 152 (503)
+. ++++++..+.+.+.+.+.|+-.-|+.... +.+.+.+... |+.+.++--.| ...-...|. ..+.|+.+
T Consensus 77 a~-q~~~al~~l~~~~~~~t~vl~lqNG~g~~-e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 77 AY-QLEEALPSLAPLLGPNTVVLFLQNGLGHE-EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred cc-cHHHHHHHhhhcCCCCcEEEEEeCCCcHH-HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 96 89999999999999999999888886433 3444444433 22222222111 111111233 23445566
Q ss_pred HHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHH
Q 010702 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN---------------------GIEYGDMQLISEAYDVLKH 211 (503)
Q Consensus 153 ~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N---------------------~i~~~~~~~~~Ea~~l~~~ 211 (503)
+.++.+.++|+.-+. .+.+..+.-...+.|++-| .......+++.|+...+.+
T Consensus 155 ~~~~~i~~~~~~a~~------~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~ 228 (307)
T COG1893 155 ELVKALAELFKEAGL------EVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARA 228 (307)
T ss_pred HHHHHHHHHHHhCCC------CeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHh
Confidence 778888888877663 3333334444555555544 2344566788999999998
Q ss_pred hCCCC--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHH
Q 010702 212 VGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (503)
Q Consensus 212 ~g~~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~ 288 (503)
.| +. .+.+.+++........ ....++..+..+.+ .-.+|.|.. ..++.|+++|+++|+...
T Consensus 229 ~g-~~~~~~~~~~v~~~~~~~~~-~~~sSM~qDl~~gr-----~tEid~i~G---------~vv~~a~~~gi~~P~~~~ 291 (307)
T COG1893 229 EG-VELPEEVVERVLAVIRATDA-ENYSSMLQDLEKGR-----PTEIDAING---------AVVRLAKKHGLATPVNDT 291 (307)
T ss_pred cc-CCCCHHHHHHHHHHHHhccc-ccCchHHHHHHcCC-----cccHHHHhh---------HHHHHHHHhCCCCcHHHH
Confidence 87 54 4334444332222211 11223334444332 147788776 478999999999998875
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.3e-12 Score=109.79 Aligned_cols=109 Identities=17% Similarity=0.271 Sum_probs=74.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEE-EeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+||+|||.|++|..|++.|.++||+|.. |+|+++..+++..... -....++.++++. +|++|++||++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~------~~~~~~~~~~~~~---aDlv~iavpDd- 79 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG------AGAILDLEEILRD---ADLVFIAVPDD- 79 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T------T-----TTGGGCC----SEEEE-S-CC-
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc------ccccccccccccc---CCEEEEEechH-
Confidence 46899999999999999999999999875 5899888777765421 1234566676665 99999999997
Q ss_pred hHHHHHHHHHhc--CCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 85 PVDQTIAALSEH--MSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 85 ~v~~vl~~l~~~--l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
.+.++.++|... ..+|++|+++|.....+.. +-++++|..
T Consensus 80 aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL---~p~~~~Ga~ 121 (127)
T PF10727_consen 80 AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVL---APARERGAI 121 (127)
T ss_dssp HHHHHHHHHHCC--S-TT-EEEES-SS--GGGG---HHHHHTT-E
T ss_pred HHHHHHHHHHHhccCCCCcEEEECCCCChHHhh---hhHHHCCCe
Confidence 899999999987 7899999999998765544 334555653
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.2e-11 Score=110.81 Aligned_cols=195 Identities=13% Similarity=0.165 Sum_probs=133.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-------ccC------C---C------CeeeeCCH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REG------Q---L------PLTGHYTP 63 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g------~---~------~i~~~~s~ 63 (503)
++.|+|||.|.||++||+..+..|++|+++|++.+.+.+..+... .++ . + ++..+++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv 90 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNV 90 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCH
Confidence 457999999999999999999999999999999987655432110 000 0 0 34455666
Q ss_pred HHHHhccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh----cCccEecc-cCCCCh
Q 010702 64 RDFVLSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGM-GVSGGE 137 (503)
Q Consensus 64 ~e~~~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~-pvsgg~ 137 (503)
.+++.+ +|+||.++-+...++.-+ ..+-...++..+++..++ +...+ ++...++. .|.||+.. ||+.-.
T Consensus 91 ~~~v~d---adliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTS-Sl~lt-~ia~~~~~~srf~GlHFfNPvPvMKLv 165 (298)
T KOG2304|consen 91 SDAVSD---ADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTS-SLSLT-DIASATQRPSRFAGLHFFNPVPVMKLV 165 (298)
T ss_pred HHhhhh---hHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeeccc-ceeHH-HHHhhccChhhhceeeccCCchhHHHh
Confidence 677766 899998887766666544 555555555555554443 33322 33333332 28899885 777655
Q ss_pred hhhhcCCcccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 010702 138 EGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (503)
Q Consensus 138 ~~a~~G~~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~ 217 (503)
+..+. .-.+++.+..+..+-+.+| +..+.+.+ -.|.. .|.+ .+-.+.|+.++.+++- .+.
T Consensus 166 EVir~-----~~TS~eTf~~l~~f~k~~g------KttVackD-tpGFI----VNRl---LiPyl~ea~r~yerGd-Ask 225 (298)
T KOG2304|consen 166 EVIRT-----DDTSDETFNALVDFGKAVG------KTTVACKD-TPGFI----VNRL---LIPYLMEAIRMYERGD-ASK 225 (298)
T ss_pred hhhcC-----CCCCHHHHHHHHHHHHHhC------CCceeecC-CCchh----hhHH---HHHHHHHHHHHHHhcC-CcH
Confidence 54443 2347899999999999999 77777755 44444 4554 5666799999999987 999
Q ss_pred HHHHHHHH
Q 010702 218 AELAEIFD 225 (503)
Q Consensus 218 ~~i~~~~~ 225 (503)
++|+..++
T Consensus 226 eDIDtaMk 233 (298)
T KOG2304|consen 226 EDIDTAMK 233 (298)
T ss_pred hhHHHHHh
Confidence 99999874
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-09 Score=112.38 Aligned_cols=111 Identities=13% Similarity=0.147 Sum_probs=93.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+|||++...+..... ++....+++++++. +|+|++++|...++
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 262 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL-------GLTYHVSFDSLVSV---CDVVTIHCPLHPET 262 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc-------CceecCCHHHHhhc---CCEEEEcCCCCHHH
Confidence 579999999999999999999999999999986432222221 24456789999887 99999999999999
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+.++ ++.+..+++|.++|+++.+..-+...+.+.+++..+.
T Consensus 263 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 263 EHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred HHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence 9999 5788889999999999999999999999999876554
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-09 Score=101.62 Aligned_cols=203 Identities=15% Similarity=0.237 Sum_probs=135.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH-----------HhhcccCCC-------CeeeeCCHHHHHh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL-----------DRAHREGQL-------PLTGHYTPRDFVL 68 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~~~~~g~~-------~i~~~~s~~e~~~ 68 (503)
-||||+|.|.+|+++|..|+..||+|.+||..++.+.... +.|.-.|++ .+..++++.|+++
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk 83 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVK 83 (313)
T ss_pred cceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHh
Confidence 4899999999999999999999999999999998654332 222222222 3567889999998
Q ss_pred ccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC--c
Q 010702 69 SIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP--S 145 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~--~ 145 (503)
. +=.|-.|+|++-.++.-+ .+|-..+ ...+|+..||+.+..+.- .+-+..+.-..+..|+-... .-| -
T Consensus 84 ~---Ai~iQEcvpE~L~lkk~ly~qlD~i~-d~~tIlaSSTSt~mpS~~-s~gL~~k~q~lvaHPvNPPy----fiPLvE 154 (313)
T KOG2305|consen 84 G---AIHIQECVPEDLNLKKQLYKQLDEIA-DPTTILASSTSTFMPSKF-SAGLINKEQCLVAHPVNPPY----FIPLVE 154 (313)
T ss_pred h---hhhHHhhchHhhHHHHHHHHHHHHhc-CCceEEeccccccChHHH-hhhhhhhhheeEecCCCCCc----ccchhe
Confidence 7 878889999987777665 4444444 445666666665544432 33333332234444543211 011 1
Q ss_pred cc--CCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010702 146 LM--PGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223 (503)
Q Consensus 146 i~--~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~ 223 (503)
++ +=.+++.+++.+.+++.+| ..++....+--|.. .|.+.|++. +|.++|+..++ ++..+++.+
T Consensus 155 lVPaPwTsp~tVdrt~~lM~sig------q~pV~l~rei~Gf~----lnriq~Ail---ne~wrLvasGi-l~v~dvD~V 220 (313)
T KOG2305|consen 155 LVPAPWTSPDTVDRTRALMRSIG------QEPVTLKREILGFA----LNRIQYAIL---NETWRLVASGI-LNVNDVDAV 220 (313)
T ss_pred eccCCCCChhHHHHHHHHHHHhC------CCCcccccccccce----eccccHHHH---HHHHHHHHccC-cchhhHHHH
Confidence 22 2357889999999999999 44544444333443 467766665 99999999887 999999888
Q ss_pred HHHhccCCcchh
Q 010702 224 FDEWNKGELESF 235 (503)
Q Consensus 224 ~~~~~~g~~~s~ 235 (503)
+ +.|-+..|
T Consensus 221 m---S~GLG~RY 229 (313)
T KOG2305|consen 221 M---SAGLGPRY 229 (313)
T ss_pred H---hcCCCcch
Confidence 7 34544433
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-09 Score=111.95 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=94.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+++|+.|...|++|.+||++++..... +....+++++++. +|+|++++|...++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~-----------~~~~~~l~ell~~---aDiVil~lP~t~~t 212 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF-----------LTYKDSVKEAIKD---ADIISLHVPANKES 212 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh-----------hhccCCHHHHHhc---CCEEEEeCCCcHHH
Confidence 589999999999999999999999999999998653321 1234588888887 99999999998777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
..++ .++++.+++|.++|+++.+..-+...+.+.+.+..+.....-|.-
T Consensus 213 ~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~ 262 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYE 262 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccC
Confidence 7777 678888999999999999999999999999987655444333443
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.6e-09 Score=110.54 Aligned_cols=111 Identities=11% Similarity=0.056 Sum_probs=93.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|.+|.+||+++...+...+. ++....++++++.. +|+|++++|....+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~-------g~~~~~~l~ell~~---sDvV~l~lPlt~~T 269 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKET-------GAKFEEDLDAMLPK---CDVVVINTPLTEKT 269 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhc-------CceecCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 579999999999999999999999999999986433322222 23455689999987 99999999999999
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+.++ .+++..+++|.++|+++.+..-+...+.+.+++..+.
T Consensus 270 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~ 311 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIG 311 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCce
Confidence 9999 5788889999999999999999999999999876554
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-08 Score=102.81 Aligned_cols=244 Identities=17% Similarity=0.172 Sum_probs=141.2
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc-C-CCCe-----eeeCCHHHHHhccCCCcEEEEecCCChhHHHH
Q 010702 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE-G-QLPL-----TGHYTPRDFVLSIQRPRSVIILVKAGSPVDQT 89 (503)
Q Consensus 17 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-g-~~~i-----~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~v 89 (503)
||+.+|..|+++|++|++++|+ +..+.+.+.|..- + ..+. ....++++ +..+|+||++|+.. +++++
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~----~~~~D~iiv~vKs~-~~~~~ 75 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE----LPPADLVIITVKAY-QTEEA 75 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh----cCCCCEEEEeccch-hHHHH
Confidence 7999999999999999999997 6666766554210 0 0011 11223333 23489999999996 78999
Q ss_pred HHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccCCCChhhhhcCC-cccCCC---CHHHHHHHHHH
Q 010702 90 IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGG---SFEAYNNIRDI 161 (503)
Q Consensus 90 l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsgg~~~a~~G~-~i~~gg---~~~a~~~v~~l 161 (503)
++.+.+.+.++.+|+...|+.-. .+.+.+.+... |+.++++-..+...-...+. .+..|. ..+..+.+.++
T Consensus 76 l~~l~~~l~~~~~iv~~qNG~g~-~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~ 154 (293)
T TIGR00745 76 AALLLPLIGKNTKVLFLQNGLGH-EERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAEL 154 (293)
T ss_pred HHHhHhhcCCCCEEEEccCCCCC-HHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHH
Confidence 99999999998999998887632 33344444322 12222222221101111122 233332 22445566667
Q ss_pred HHHHhcccCCCCcEEEeCCcchhHHHHhHHHH---------------------HHHHHHHHHHHHHHHHHHhCCCC--HH
Q 010702 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG---------------------IEYGDMQLISEAYDVLKHVGGLS--NA 218 (503)
Q Consensus 162 l~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~---------------------i~~~~~~~~~Ea~~l~~~~g~~~--~~ 218 (503)
|+..+ ..+....+.-...+.|++.|. .......++.|++.++++.| ++ .+
T Consensus 155 l~~~~------~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G-~~~~~~ 227 (293)
T TIGR00745 155 LNEAG------IPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEG-VDLPDD 227 (293)
T ss_pred HHhCC------CCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCC-CCCCHH
Confidence 76655 223333333334444444332 33445677899999999988 75 34
Q ss_pred HHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 219 ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 219 ~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
.+.+.+.........+ ..++..++.+.+. ..+|.+.. +.++.|+++|+|+|.....
T Consensus 228 ~~~~~~~~~~~~~~~~-~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~l 283 (293)
T TIGR00745 228 EVEELVRAVIRMTAEN-TSSMLQDLLRGRR-----TEIDAING---------AVVRLAEKLGIDAPVNRTL 283 (293)
T ss_pred HHHHHHHHHHhcCCCC-CChHHHHHHcCCc-----chHHHhcc---------HHHHHHHHcCCCCChHHHH
Confidence 4444443332211111 1233345543321 36777665 5789999999999988753
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.8e-09 Score=102.06 Aligned_cols=143 Identities=17% Similarity=0.283 Sum_probs=99.0
Q ss_pred HHHHHHhCC--CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCC
Q 010702 21 LALNVAEKG--FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMS 98 (503)
Q Consensus 21 lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~ 98 (503)
+|+.|.++| ++|++||++++..+...+.|... ....+ .+.+.+ +|+||+|+|.. .+.+++.++.+.++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~-----~~~~~-~~~~~~---~DlvvlavP~~-~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIID-----EASTD-IEAVED---ADLVVLAVPVS-AIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSS-----EEESH-HHHGGC---CSEEEE-S-HH-HHHHHHHHHHCGS-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCee-----eccCC-HhHhcC---CCEEEEcCCHH-HHHHHHHHhhhhcC
Confidence 688899999 68999999999888776665432 23333 556666 99999999995 78999999999999
Q ss_pred CCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCCh--------hhhhcCC-cc-cCCC--CHHHHHHHHHHHHHH
Q 010702 99 PGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGE--------EGARHGP-SL-MPGG--SFEAYNNIRDILQKV 165 (503)
Q Consensus 99 ~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~--------~~a~~G~-~i-~~gg--~~~a~~~v~~ll~~i 165 (503)
+|.+|+|.+++.......+.+.+. .++.|++. |+.|.+ .....|. .+ .++. +++.++.++.+++.+
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~ 149 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEAL 149 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHC
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHC
Confidence 999999999998777766666555 57888885 777762 1222455 33 3333 568899999999999
Q ss_pred hcccCCCCcEEEeCC
Q 010702 166 AAQVDDGPCVTYIGE 180 (503)
Q Consensus 166 g~~~~~~~~v~~~G~ 180 (503)
| .+++.+.+
T Consensus 150 G------a~~~~~~~ 158 (258)
T PF02153_consen 150 G------ARVVEMDA 158 (258)
T ss_dssp T-------EEEE--H
T ss_pred C------CEEEEcCH
Confidence 9 56777754
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.6e-09 Score=99.65 Aligned_cols=137 Identities=20% Similarity=0.246 Sum_probs=93.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|+|+|+|.||..+|+.|.+.|++|.++|+++++.+++.+.. +....+ .+++... ++|+++.|...+...
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~------g~~~v~-~~~l~~~--~~Dv~vp~A~~~~I~ 99 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELF------GATVVA-PEEIYSV--DADVFAPCALGGVIN 99 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc------CCEEEc-chhhccc--cCCEEEecccccccC
Confidence 5799999999999999999999999999999999888876642 123333 3444431 399998776554333
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccC-CCChhhhhcCCcccCCCCH-HHHHHHHHH
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGV-SGGEEGARHGPSLMPGGSF-EAYNNIRDI 161 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pv-sgg~~~a~~G~~i~~gg~~-~a~~~v~~l 161 (503)
++.++ .+ +.++|++.+|....+ .+..+.|+++|+.|++ ... +||. ..+...|.++.+ ++.++++++
T Consensus 100 ~~~~~----~l-~~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~Pd~~~NaGGv---~~~~~e~~~~~~~~~~~~~~~~ 168 (200)
T cd01075 100 DDTIP----QL-KAKAIAGAANNQLAD-PRHGQMLHERGILYAPDYVVNAGGL---INVADELYGGNEARVLAKVEAI 168 (200)
T ss_pred HHHHH----Hc-CCCEEEECCcCccCC-HhHHHHHHHCCCEEeCceeeeCcCc---eeehhHHhCCcHHHHHHHHHHH
Confidence 33333 34 468999999987654 5778889999999987 555 4432 333345556553 344444333
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-09 Score=109.56 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=91.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|+.|...|++|.+|||++.... .... +.. ..++++++++ +|+|++++|....+
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~-------~~~-~~~l~ell~~---aDiV~l~lP~t~~T 218 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKEL-------GAE-YRPLEELLRE---SDFVSLHVPLTKET 218 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHc-------CCE-ecCHHHHHhh---CCEEEEeCCCChHH
Confidence 5899999999999999999999999999999875432 1111 122 4588998887 99999999998888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+.++ .+.+..+++|.++|+++.+...+...+.+.+.+..+.
T Consensus 219 ~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 260 (333)
T PRK13243 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIA 260 (333)
T ss_pred hhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeE
Confidence 8888 6788889999999999999999999999998876443
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=102.56 Aligned_cols=146 Identities=12% Similarity=0.101 Sum_probs=96.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC-hhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRT-TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|||||+|.||.++|++|.+.|++|.++++. +++.+.+.+.+ +.. .+..++++. +|+|++++|+..+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~G-------v~~-~s~~ea~~~---ADiVvLaVpp~~~ 72 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDG-------FKV-GTVEEAIPQ---ADLIMNLLPDEVQ 72 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCC-------CEE-CCHHHHHhc---CCEEEEeCCcHhH
Confidence 58999999999999999999999998876554 44455554432 343 467788777 9999999998646
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe-cccCCCChhh-----hhcCC-ccc-CC--CCHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEG-----ARHGP-SLM-PG--GSFEAY 155 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~~-----a~~G~-~i~-~g--g~~~a~ 155 (503)
...+++++.+.+.++. +|..+.+... ......+. .++..+ -+|=..+... ...|. +++ ++ -+.+..
T Consensus 73 ~~~v~~ei~~~l~~g~-iVs~aaG~~i--~~~~~~~~-~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~ 148 (314)
T TIGR00465 73 HEVYEAEIQPLLKEGK-TLGFSHGFNI--HFVQIVPP-KDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAM 148 (314)
T ss_pred HHHHHHHHHhhCCCCc-EEEEeCCccH--hhccccCC-CCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHH
Confidence 6767778988888776 4454444322 22222232 233333 3454433210 02444 443 33 366788
Q ss_pred HHHHHHHHHHhc
Q 010702 156 NNIRDILQKVAA 167 (503)
Q Consensus 156 ~~v~~ll~~ig~ 167 (503)
+.+..++..+|.
T Consensus 149 ~~~~~~~~~iG~ 160 (314)
T TIGR00465 149 AIALAYAKAIGG 160 (314)
T ss_pred HHHHHHHHHcCC
Confidence 999999999993
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-09 Score=98.95 Aligned_cols=110 Identities=12% Similarity=0.230 Sum_probs=89.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|+.|..-|.+|.+|||+..........+ + ...+++++++. +|+|++++|.....
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~-------~-~~~~l~ell~~---aDiv~~~~plt~~T 105 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG-------V-EYVSLDELLAQ---ADIVSLHLPLTPET 105 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT-------E-EESSHHHHHHH----SEEEE-SSSSTTT
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc-------c-eeeehhhhcch---hhhhhhhhcccccc
Confidence 5899999999999999999999999999999988655333322 2 46699999998 99999999987777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+++..+.
T Consensus 106 ~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 106 RGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp TTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred ceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence 7777 6778889999999999999888888898888876444
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-09 Score=97.86 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=85.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.++|+|||+|.||..++..|++.| ++|.++||++++.+++.+...... ......+..+++++ +|+||+++|.+.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~Dvvi~~~~~~~ 93 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG--IAIAYLDLEELLAE---ADLIINTTPVGM 93 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc--cceeecchhhcccc---CCEEEeCcCCCC
Confidence 368999999999999999999996 789999999998888766532100 00134466666555 999999999975
Q ss_pred h-HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 85 P-VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 85 ~-v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
. ++.+... ...++++.+++|+++... .+ .+.+.+++.|++|++.
T Consensus 94 ~~~~~~~~~-~~~~~~~~~v~D~~~~~~-~~-~l~~~~~~~g~~~v~g 138 (155)
T cd01065 94 KPGDELPLP-PSLLKPGGVVYDVVYNPL-ET-PLLKEARALGAKTIDG 138 (155)
T ss_pred CCCCCCCCC-HHHcCCCCEEEEcCcCCC-CC-HHHHHHHHCCCceeCC
Confidence 3 2322211 123578999999998754 34 7778888888887764
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.3e-09 Score=107.30 Aligned_cols=111 Identities=17% Similarity=0.266 Sum_probs=90.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+||++++....+. ......+++++++. +|+|++++|...++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~---------~~~~~~~l~e~l~~---aDvvv~~lPlt~~T 204 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQ---------SFAGREELSAFLSQ---TRVLINLLPNTPET 204 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCce---------eecccccHHHHHhc---CCEEEECCCCCHHH
Confidence 5899999999999999999999999999999765421111 01123577888877 99999999999999
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
+.++ .+.+..+++|.++|+++-+..-+...+.+.|.+..+...
T Consensus 205 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~ga 248 (312)
T PRK15469 205 VGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGA 248 (312)
T ss_pred HHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeE
Confidence 9998 467888999999999999998899999999988655433
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.2e-09 Score=107.00 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=88.5
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|||||+|.||+.+|++|+ ..|.+|.+||+++.... ... +....+++++++. +|+|++++|....
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~-------~~~~~~l~ell~~---aDvIvl~lP~t~~ 213 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATY-------VDYKDTIEEAVEG---ADIVTLHMPATKY 213 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---Hhh-------ccccCCHHHHHHh---CCEEEEeCCCCcc
Confidence 58999999999999999994 56889999999875421 111 2345689999887 9999999999877
Q ss_pred HHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
.+.++ .++.+.+++|.++|++|.+...++..+.+.+.+..+.
T Consensus 214 t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ 256 (332)
T PRK08605 214 NHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK 256 (332)
T ss_pred hhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence 77665 5677889999999999999999999999999876544
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.4e-09 Score=105.89 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=89.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|+.+...|++|.+|||+... .+. .....+++++++. +|+|++++|...++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~------~~~~~~l~ell~~---aDiv~~~lp~t~~T 187 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGI------SSIYMEPEDIMKK---SDFVLISLPLTDET 187 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCc------ccccCCHHHHHhh---CCEEEECCCCCchh
Confidence 57999999999999999998889999999998432 111 0124689999887 99999999999888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
+.++ .+.+..+++|.++|++|.+...+...+.+.+++..+..
T Consensus 188 ~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~ 230 (303)
T PRK06436 188 RGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKY 230 (303)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceE
Confidence 8888 56778899999999999999999999999998764443
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=101.72 Aligned_cols=125 Identities=19% Similarity=0.185 Sum_probs=90.3
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEE
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIi 77 (503)
|++..++||||||+|.||..++.+|.+. +++|. +|||++++.+++.+.... ...+.+++++.++ +|+|+
T Consensus 1 ~~~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~-----~~~~~~~eell~~---~D~Vv 72 (271)
T PRK13302 1 MSSRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR-----PPPVVPLDQLATH---ADIVV 72 (271)
T ss_pred CCCCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC-----CcccCCHHHHhcC---CCEEE
Confidence 5654457899999999999999999874 77765 889999988877654211 2356789999776 99999
Q ss_pred EecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccE-ecccCCCCh
Q 010702 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY-LGMGVSGGE 137 (503)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~-i~~pvsgg~ 137 (503)
+|+|.. ...++....+ ..|+.|+..+.......+++.+.+++.|..+ +..+..+|-
T Consensus 73 i~tp~~-~h~e~~~~aL---~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g~ 129 (271)
T PRK13302 73 EAAPAS-VLRAIVEPVL---AAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLGL 129 (271)
T ss_pred ECCCcH-HHHHHHHHHH---HcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHhH
Confidence 999986 4455554443 4666666666655556777888888888765 544555443
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=101.64 Aligned_cols=191 Identities=13% Similarity=0.099 Sum_probs=114.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||.++|++|...|++|.+|+|.....+.....+ +.. .+++++++. +|+|++++|+. ..
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G-------~~v-~sl~Eaak~---ADVV~llLPd~-~t 84 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADG-------FEV-MSVSEAVRT---AQVVQMLLPDE-QQ 84 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcC-------CEE-CCHHHHHhc---CCEEEEeCCCh-HH
Confidence 5799999999999999999999999999987644433333322 333 489999988 99999999985 55
Q ss_pred HHHH-HHHHhcCCCCCEEEecCC--CChhhHHHHHHHHHhcCccEe-cccCCCChhhhh---c--CC-cccC---CCCHH
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGN--EWYLNTERRIHEASQKGLLYL-GMGVSGGEEGAR---H--GP-SLMP---GGSFE 153 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st--~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~~a~---~--G~-~i~~---gg~~~ 153 (503)
+.++ +++++.+++|.+++-.-. ..+. .....+++..+ -+|=..|....+ . |. ++++ -.+-.
T Consensus 85 ~~V~~~eil~~MK~GaiL~f~hgfni~~~------~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~ 158 (335)
T PRK13403 85 AHVYKAEVEENLREGQMLLFSHGFNIHFG------QINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGT 158 (335)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCcceecC------ceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCc
Confidence 7787 579999999998765432 2221 11223344332 345444432211 2 22 3321 12333
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHh-H-HHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010702 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKM-V-HNGIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (503)
Q Consensus 154 a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~-v-~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 220 (503)
+.+.+......||+-- .-++...- -.-...-+ - +..+-.+..+++--.+..+.+.| .+|+..
T Consensus 159 a~~~ala~a~~iG~~r---agv~~ttf-~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaG-y~pe~A 222 (335)
T PRK13403 159 ALHVALAYAKGVGCTR---AGVIETTF-QEETETDLFGEQAVLCGGVTALVKAGFETLTEGG-YRPEIA 222 (335)
T ss_pred HHHHHHHHHHHcCCCc---eeEEecch-HHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcC-CCHHHH
Confidence 6677777778887421 01111100 00000000 0 11234556667777777788888 888754
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.9e-08 Score=107.53 Aligned_cols=111 Identities=12% Similarity=0.117 Sum_probs=91.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+||+.... +...+. ++...++++++++. +|+|++++|...++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 207 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQL-------GVELVDDLDELLAR---ADFITVHTPLTPET 207 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEcCCHHHHHhh---CCEEEEccCCChhh
Confidence 57999999999999999999999999999986322 112221 23445689999887 99999999998888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+++..+..
T Consensus 208 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 250 (525)
T TIGR01327 208 RGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRA 250 (525)
T ss_pred ccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeE
Confidence 8888 56777899999999999999999999999998865543
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.9e-08 Score=99.24 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=89.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH--------HhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL--------DRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~--------~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
++|||||+|.||+.+|+.|...|.+|.+|||+........ ...... .....++++++.. +|+|++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~ell~~---aDiVvl 232 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDE----KGGHEDIYEFAGE---ADIVVL 232 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccc----cCcccCHHHHHhh---CCEEEE
Confidence 5899999999999999999999999999999743211110 000000 0134588888887 999999
Q ss_pred ecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 79 LVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 79 ~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
++|.....+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+.
T Consensus 233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~ 282 (347)
T PLN02928 233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLG 282 (347)
T ss_pred CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 999888888888 6778889999999999999888998999988876443
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.1e-08 Score=106.42 Aligned_cols=108 Identities=14% Similarity=0.187 Sum_probs=90.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+||++... +..... ++... +++++++. +|+|++++|...++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~-~l~ell~~---aDiV~l~lP~t~~t 208 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQL-------GVELV-SLDELLAR---ADFITLHTPLTPET 208 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEE-cHHHHHhh---CCEEEEccCCChHh
Confidence 57999999999999999999999999999986432 122222 23444 89999887 99999999998888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+++..+
T Consensus 209 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 249 (526)
T PRK13581 209 RGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKV 249 (526)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCe
Confidence 9888 678888999999999999999999999999887544
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.5e-08 Score=99.32 Aligned_cols=109 Identities=13% Similarity=0.245 Sum_probs=90.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|..+..-|++|.+||+...+..... . ......+++++++. +|+|.+.+|-...+
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~-~-------~~~~~~~Ld~lL~~---sDiv~lh~PlT~eT 211 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV-D-------GVVGVDSLDELLAE---ADILTLHLPLTPET 211 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc-c-------cceecccHHHHHhh---CCEEEEcCCCCcch
Confidence 5899999999999999999999999999999433211111 1 24556889999998 99999999998889
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
+.++ .+.+..+++|.++|+++-+..-+...+.+.+++..+
T Consensus 212 ~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i 252 (324)
T COG0111 212 RGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI 252 (324)
T ss_pred hcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCc
Confidence 9888 567778999999999999999899999998887533
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.1e-08 Score=87.65 Aligned_cols=89 Identities=17% Similarity=0.264 Sum_probs=65.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|+|||.|..|.+.|+||.+.|++|.+..|..+ ..+...+.| +. ..+.+|+++. +|+|++.+|+. .
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~G-------f~-v~~~~eAv~~---aDvV~~L~PD~-~ 72 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADG-------FE-VMSVAEAVKK---ADVVMLLLPDE-V 72 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT--------E-CCEHHHHHHC----SEEEE-S-HH-H
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCC-------Ce-eccHHHHHhh---CCEEEEeCChH-H
Confidence 5899999999999999999999999999988877 455555443 33 4588898887 99999999984 5
Q ss_pred HHHHH-HHHHhcCCCCCEEEecC
Q 010702 86 VDQTI-AALSEHMSPGDCIIDGG 107 (503)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~s 107 (503)
..+++ +++.|.|++|++++-..
T Consensus 73 q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 73 QPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp HHHHHHHHHHHHS-TT-EEEESS
T ss_pred HHHHHHHHHHhhCCCCCEEEeCC
Confidence 66777 89999999999887654
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-07 Score=94.02 Aligned_cols=149 Identities=14% Similarity=0.121 Sum_probs=108.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
.+|||||.|.||+-+|.-|.++||.|...||+. .+.+++.. +...++.+.++++. .+|+|++|+.. ..+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y------g~~~ft~lhdlcer--hpDvvLlctsi-lsi 121 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY------GSAKFTLLHDLCER--HPDVVLLCTSI-LSI 121 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh------cccccccHHHHHhc--CCCEEEEEehh-hhH
Confidence 369999999999999999999999999999986 44444432 23457788888875 59999999987 478
Q ss_pred HHHHHHHHhc-CCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCChhhhhcCC--cccC----CC----CHHH
Q 010702 87 DQTIAALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGP--SLMP----GG----SFEA 154 (503)
Q Consensus 87 ~~vl~~l~~~-l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~~~a~~G~--~i~~----gg----~~~a 154 (503)
+.++...-+. ++.|++++|..+..........+.+.+ .+..+-+ |+.|....-..+. .++. .| .++.
T Consensus 122 ekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPk-dfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~er 200 (480)
T KOG2380|consen 122 EKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK-DFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPER 200 (480)
T ss_pred HHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCcc-ccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHH
Confidence 8888777665 889999999998886666666666654 4666654 5555442322222 2221 23 3678
Q ss_pred HHHHHHHHHHHhc
Q 010702 155 YNNIRDILQKVAA 167 (503)
Q Consensus 155 ~~~v~~ll~~ig~ 167 (503)
++.+.++|...+.
T Consensus 201 cE~fleIf~cegc 213 (480)
T KOG2380|consen 201 CEFFLEIFACEGC 213 (480)
T ss_pred HHHHHHHHHhcCC
Confidence 8888889988883
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.5e-08 Score=101.32 Aligned_cols=115 Identities=12% Similarity=0.154 Sum_probs=89.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh--
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~-- 84 (503)
++|||||+|.||+.+|+.+...|++|.+||+..... .+ .....+++++++. ||+|++++|-..
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~-------~~~~~~l~ell~~---aDiV~lh~Plt~~g 181 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EG-------DGDFVSLERILEE---CDVISLHTPLTKEG 181 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----cc-------CccccCHHHHHhh---CCEEEEeCcCCCCc
Confidence 579999999999999999999999999999854321 11 1234689999887 999999999754
Q ss_pred --hHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC
Q 010702 85 --PVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (503)
Q Consensus 85 --~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg 136 (503)
....++ ++.+..+++|.++|+++.+..-+...+.+.+.+..+.....-|.-.
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~ 236 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEG 236 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCC
Confidence 356666 5677889999999999999999999999988775443333334433
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.3e-08 Score=97.23 Aligned_cols=106 Identities=13% Similarity=0.215 Sum_probs=89.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|+.+..-|.+|.+|||..... .. .+ ...+++++++. +|+|++++|-....
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~-------~~-~~~~l~ell~~---sDvv~lh~Plt~~T 210 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NE-------EY-ERVSLEELLKT---SDIISIHAPLNEKT 210 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----cc-------Cc-eeecHHHHhhc---CCEEEEeCCCCchh
Confidence 579999999999999999999999999999964321 11 12 24589999887 99999999988888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+..+ ++.+..+++|.++|+++.+..-+...+.+.|++..+.
T Consensus 211 ~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 211 KNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE
Confidence 8888 6777889999999999999999999999999876554
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-07 Score=95.52 Aligned_cols=116 Identities=16% Similarity=0.233 Sum_probs=93.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
+++||||+|.+|+.+|+++..-|.+|..|||++. .+..+.. +.... ++++++++ +|+|.+.+|...+.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~------~~~y~-~l~ell~~---sDii~l~~Plt~~T 214 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKEL------GARYV-DLDELLAE---SDIISLHCPLTPET 214 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhc------Cceec-cHHHHHHh---CCEEEEeCCCChHH
Confidence 6899999999999999999977889999999975 2222221 12333 49999988 99999999999999
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCC
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (503)
...+ .+.+..+++|.++|+++-+..-+...+.+.+++..+.-.+.-|.
T Consensus 215 ~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~ 263 (324)
T COG1052 215 RHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVF 263 (324)
T ss_pred hhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeec
Confidence 9988 67788899999999999999999999999998865543333333
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=99.79 Aligned_cols=108 Identities=14% Similarity=0.188 Sum_probs=91.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|+.+..-|.+|.+||+++... .+ .+....+++++++. ||+|++.+|.....
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~-----~~------~~~~~~~l~ell~~---sDiVslh~Plt~~T 217 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP-----LG------NARQVGSLEELLAQ---SDVVSLHVPETPST 217 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc-----cC------CceecCCHHHHHhh---CCEEEEcCCCChHH
Confidence 579999999999999999999999999999874311 11 13445689999988 99999999998888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+++..+..
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 260 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAG 260 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceE
Confidence 8888 67788899999999999999999999999998765543
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.6e-07 Score=93.02 Aligned_cols=108 Identities=15% Similarity=0.167 Sum_probs=88.5
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|||||+|.+|+.+|+.+. .-|.+|..||+...... .... ++. ..+++++++. ||+|++++|-...
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~-------~~~-~~~l~ell~~---sDvv~lh~plt~~ 213 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA-EERF-------NAR-YCDLDTLLQE---SDFVCIILPLTDE 213 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh-HHhc-------CcE-ecCHHHHHHh---CCEEEEeCCCChH
Confidence 57999999999999999997 77889999998743211 1111 123 3589999887 9999999999888
Q ss_pred HHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
.+.++ .+.+..+++|.++|+++-+..-+...+.+.+++..+
T Consensus 214 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i 255 (323)
T PRK15409 214 THHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEI 255 (323)
T ss_pred HhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 88888 577888999999999999999899999999887644
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.1e-07 Score=93.35 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=87.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|+.+..-|.+|.+|||.... .. . ...+++++++. +|+|++++|-....
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~-------~-~~~~l~ell~~---sDiv~l~lPlt~~T 211 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------AR-------P-DRLPLDELLPQ---VDALTLHCPLTEHT 211 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------cc-------c-cccCHHHHHHh---CCEEEECCCCChHH
Confidence 57999999999999999999999999999986321 00 1 13478999887 99999999988888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+..+ .+.+..+++|.++|+++-+..-+...+.+.+++..+.
T Consensus 212 ~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 253 (317)
T PRK06487 212 RHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLG 253 (317)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 8888 6778889999999999999988999999999876443
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-07 Score=91.45 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=82.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK--GFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~--G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
||||||||+|.||..++..+.+. +++ +.++|+++++.+.+.+.. +...+.++++++.+ +|+|++|+|+
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------~~~~~~~~~ell~~---~DvVvi~a~~ 71 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------GAKACLSIDELVED---VDLVVECASV 71 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------CCeeECCHHHHhcC---CCEEEEcCCh
Confidence 36999999999999999999876 355 558999999888876632 24567889998755 9999999987
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCC---ChhhHHHHHHHHHhcCcc-EecccCCCCh
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNE---WYLNTERRIHEASQKGLL-YLGMGVSGGE 137 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~---~~~~t~~~~~~l~~~gi~-~i~~pvsgg~ 137 (503)
. ...+.+..++. .|.-++..|.. .....+++.+.+++.|.. |+..+..+|.
T Consensus 72 ~-~~~~~~~~al~---~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~ 126 (265)
T PRK13304 72 N-AVEEVVPKSLE---NGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGL 126 (265)
T ss_pred H-HHHHHHHHHHH---cCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhH
Confidence 4 55666555544 45545555552 334455666666776754 4444444443
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.4e-07 Score=93.95 Aligned_cols=105 Identities=12% Similarity=0.166 Sum_probs=88.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|+.+..-|.+|..||+.... .. . ....+++++++. +|+|++++|-....
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~-~----------~~~~~l~ell~~---sDiv~l~~Plt~~T 211 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC-R----------EGYTPFEEVLKQ---ADIVTLHCPLTETT 211 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc-c----------cccCCHHHHHHh---CCEEEEcCCCChHH
Confidence 58999999999999999999999999999986421 10 0 124588999887 99999999988888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+..+ .+.+..+++|.++|+++-+..-+...+.+.+++..+.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 212 QNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence 8888 6777889999999999999988999999999876554
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.2e-07 Score=91.82 Aligned_cols=111 Identities=16% Similarity=0.066 Sum_probs=79.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|+|||+|.||..+|+.|...|.+|++++|++++.+.+.+.+.. .....++.+++.+ +|+||.++|.. .+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~-----~~~~~~l~~~l~~---aDiVint~P~~-ii 222 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLI-----PFPLNKLEEKVAE---IDIVINTIPAL-VL 222 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCe-----eecHHHHHHHhcc---CCEEEECCChH-Hh
Confidence 579999999999999999999999999999999876665543311 1112234455554 99999999874 11
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
. .+.++.++++.+|||.++..-.+.. +..++.|++.+-+|
T Consensus 223 ~---~~~l~~~k~~aliIDlas~Pg~tdf---~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 223 T---ADVLSKLPKHAVIIDLASKPGGTDF---EYAKKRGIKALLAP 262 (287)
T ss_pred C---HHHHhcCCCCeEEEEeCcCCCCCCH---HHHHHCCCEEEEeC
Confidence 1 4456678899999999886543322 45567787776554
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3e-06 Score=80.78 Aligned_cols=201 Identities=14% Similarity=0.153 Sum_probs=133.7
Q ss_pred CCcEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChhHHHHH-HHhhcccCCCCeeeeCCHH
Q 010702 6 LSRIGLAGLAVM--------------------GQNLALNVAEKGFPISVYNRTTSKVDET-LDRAHREGQLPLTGHYTPR 64 (503)
Q Consensus 6 ~~~IgIIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~~~l-~~~~~~~g~~~i~~~~s~~ 64 (503)
+|||+|.|+|+- |..||..++++||+|.+.+.+.+-.+.- .+.-... +++..++-.
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedA---GV~vv~dD~ 77 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDA---GVEVVSDDA 77 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhc---CcEEecCch
Confidence 468999999864 6779999999999999998776543221 2221112 367788888
Q ss_pred HHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHH-HHHHHhc----CccE-ecccCCCChh
Q 010702 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR-IHEASQK----GLLY-LGMGVSGGEE 138 (503)
Q Consensus 65 e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~-~~~l~~~----gi~~-i~~pvsgg~~ 138 (503)
+.++. +++.++.+|-+...-.+..+|+++++.|.+|.++.|++|...... ...|+-+ |+.- ..++|-|.+.
T Consensus 78 eaa~~---~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~ 154 (340)
T COG4007 78 EAAEH---GEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ 154 (340)
T ss_pred hhhhc---ceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC
Confidence 88887 999999999998888899999999999999999999887655432 2333221 4322 2234444332
Q ss_pred hhhcCCcccCC--------CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010702 139 GARHGPSLMPG--------GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (503)
Q Consensus 139 ~a~~G~~i~~g--------g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~ 210 (503)
+|-.++.| .+++..+++.++.++.| +.++.+...-.....-| .-.+....++.+.+-|....
T Consensus 155 ---h~~yviagr~t~g~elATeEQi~r~velaes~G------k~~yv~padv~s~VaDm-g~lvtav~l~gvldyy~Vg~ 224 (340)
T COG4007 155 ---HGHYVIAGRSTEGKELATEEQIERCVELAESTG------KEVYVLPADVVSAVADM-GVLVTAVALSGVLDYYYVGT 224 (340)
T ss_pred ---CceEEEeccCCCceeeccHHHHHHHHHHHHhcC------CceEecCHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 22222222 25777899999999999 66666643222222222 23344556778888888888
Q ss_pred HhCCCCHHHHHH
Q 010702 211 HVGGLSNAELAE 222 (503)
Q Consensus 211 ~~g~~~~~~i~~ 222 (503)
+.-|.+.+-|.+
T Consensus 225 qIi~AP~eMIek 236 (340)
T COG4007 225 QIIGAPKEMIEK 236 (340)
T ss_pred HHhCCcHHHHHH
Confidence 655466554443
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.7e-06 Score=80.13 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=112.0
Q ss_pred CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 29 GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 29 G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
.++|.+|+|++++.+.+.+.. ++....+..++++. +|+||+||++ ..+++++.++.+.+.++++||+..+
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLaVkP-~~i~~vl~~l~~~~~~~~~ivS~~a 78 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKEL------GIVASSDAQEAVKE---ADVVFLAVKP-QDLEEVLSELKSEKGKDKLLISIAA 78 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHc------CcEEeCChHHHHhh---CCEEEEEeCH-HHHHHHHHHHhhhccCCCEEEEecC
Confidence 368999999999988876642 24567888888887 9999999995 6899999999887777889999988
Q ss_pred CChhhHHHHHHHHHhcCccEec-ccCCCChhhhhcCC-cccCC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCc--c
Q 010702 109 EWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG--G 182 (503)
Q Consensus 109 ~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~~a~~G~-~i~~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~--G 182 (503)
+.+.. .+.+.+.. +...+- +|-. +.....|. .+..+ -+++..+.++.+|+.+| .++++.+. -
T Consensus 79 gi~~~--~l~~~~~~-~~~ivR~mPn~--~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G-------~~~~v~E~~~~ 146 (245)
T TIGR00112 79 GVTLE--KLSQLLGG-TRRVVRVMPNT--PAKVGAGVTAIAANANVSEEDRALVLALFKAVG-------EVVELPEALMD 146 (245)
T ss_pred CCCHH--HHHHHcCC-CCeEEEECCCh--HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCC-------CEEEECHHHcc
Confidence 87543 34444432 112222 3322 23344566 33343 25566788999999999 34445431 1
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010702 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (503)
Q Consensus 183 ~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 225 (503)
....+--.-.++.+.++..+.++ +.+.| +++++..++..
T Consensus 147 ~~talsgsgPA~~~~~~~al~~~---~v~~G-l~~~~A~~lv~ 185 (245)
T TIGR00112 147 AVTALSGSGPAYVFLFIEALADA---GVKQG-LPRELALELAA 185 (245)
T ss_pred hHHhhccCcHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 11111112334445555555555 45667 99999888864
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-07 Score=97.04 Aligned_cols=105 Identities=10% Similarity=0.160 Sum_probs=84.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh-
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~- 85 (503)
++|||||+|.||+.+|+.|...|.+|.+||+.... .+. .....++++++++ ||+|++.+|-...
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~------~~~------~~~~~~L~ell~~---sDiI~lh~PLt~~g 181 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD------RGD------EGDFRSLDELVQE---ADILTFHTPLFKDG 181 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc------ccc------ccccCCHHHHHhh---CCEEEEeCCCCCCc
Confidence 58999999999999999999999999999975321 110 0124689999887 9999999986542
Q ss_pred ---HHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 86 ---VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 86 ---v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
....+ ++.+..+++|.++|+++-+..-+...+.+.+++..+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~ 226 (378)
T PRK15438 182 PYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQK 226 (378)
T ss_pred ccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCC
Confidence 55666 577788999999999999999999999888877544
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.4e-07 Score=93.03 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=83.9
Q ss_pred CcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|+|||+|.||..++..+.. ...+|.+|||++++.+++.+.....+ ..+..+.++++++.+ +|+|+.+++...
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g-~~~~~~~~~~~av~~---aDIVi~aT~s~~ 201 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQG-FDAEVVTDLEAAVRQ---ADIISCATLSTE 201 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcC-CceEEeCCHHHHHhc---CCEEEEeeCCCC
Confidence 579999999999999986554 44789999999999999887632110 125677899988877 999988888753
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
.++.. ..+++|. +|++.++.+...+++...+.+++..|+|-
T Consensus 202 ---pvl~~--~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 202 ---PLVRG--EWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred ---CEecH--HHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 33321 3567887 66777676667777766666666667774
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=91.46 Aligned_cols=127 Identities=9% Similarity=0.139 Sum_probs=92.6
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhH-HHHHHHh-hc---ccC--CCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSK-VDETLDR-AH---REG--QLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~-~~~l~~~-~~---~~g--~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
++|||||+|.+|+.+|+.|. .-|.+|.+||+.+.. .+.+... +. ..+ ...+....+++++++. +|+|++
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~---sDiV~l 242 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE---ADVISL 242 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh---CCEEEE
Confidence 57999999999999999986 779999999988642 1111111 00 000 0011223588999887 999999
Q ss_pred ecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC
Q 010702 79 LVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (503)
Q Consensus 79 ~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg 136 (503)
++|-....+.++ .+.+..+++|.++|+++-+..-+...+.+.+++..+.....-|+-.
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~ 301 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFED 301 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCC
Confidence 999888888888 6777889999999999999888888898988875444333334433
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.8e-07 Score=90.88 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=62.4
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|+|||.| .||.+||.+|.++|++|++|++.. .++++++++ +|+||++++.+..
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------------------~~l~e~~~~---ADIVIsavg~~~~ 215 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------------------TDAKALCRQ---ADIVVAAVGRPRL 215 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------------------CCHHHHHhc---CCEEEEecCChhc
Confidence 579999996 999999999999999999998653 256777777 9999999998766
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++.+. +++|.+|||+|...
T Consensus 216 v~~~~------ik~GaiVIDvgin~ 234 (301)
T PRK14194 216 IDADW------LKPGAVVIDVGINR 234 (301)
T ss_pred ccHhh------ccCCcEEEEecccc
Confidence 66544 78999999998654
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-06 Score=87.98 Aligned_cols=108 Identities=14% Similarity=0.216 Sum_probs=90.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
-++|||+|+|.+|+.+|++|..-|..+.-++|++...+...+... -..+.++++.+ +|+|++++|..+.
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~--------~~~d~~~~~~~---sD~ivv~~pLt~~ 230 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA--------EFVDIEELLAN---SDVIVVNCPLTKE 230 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc--------cccCHHHHHhh---CCEEEEecCCCHH
Confidence 468999999999999999999998445555777776666554432 15688888888 9999999999999
Q ss_pred HHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc
Q 010702 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (503)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~ 124 (503)
+..++ .++...+.+|.+||+++-+..-+-+.+.+.+++-
T Consensus 231 T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 231 TRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred HHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence 99999 6788999999999999999988888888888764
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-05 Score=77.55 Aligned_cols=210 Identities=13% Similarity=0.112 Sum_probs=142.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhc---ccC---------CCCeeeeCCHHHHHhccC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAH---REG---------QLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~---~~g---------~~~i~~~~s~~e~~~~l~ 71 (503)
|+||+-||+|.+|.+-..-++-+. .+|++.|.+..++.+...... ..| +.++-..++.+..+.+
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~e-- 78 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKE-- 78 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhh--
Confidence 468999999999998776666554 468899999888755432110 000 0146677788888887
Q ss_pred CCcEEEEecCCCh--------------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHH--hcCccE--ecccC
Q 010702 72 RPRSVIILVKAGS--------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QKGLLY--LGMGV 133 (503)
Q Consensus 72 ~~dvIil~vp~~~--------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~--~~gi~~--i~~pv 133 (503)
+|+|+++|.++. -++++...+.......+||+.-||+.....+.+...+. .+|++| +.-|-
T Consensus 79 -adlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpe 157 (481)
T KOG2666|consen 79 -ADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPE 157 (481)
T ss_pred -cceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChH
Confidence 999999985432 24455556666666789999999999999988888775 346655 33332
Q ss_pred CCCh---hhhhcCC-cccCCCC--HHHHHHHHH---HHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHH
Q 010702 134 SGGE---EGARHGP-SLMPGGS--FEAYNNIRD---ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISE 204 (503)
Q Consensus 134 sgg~---~~a~~G~-~i~~gg~--~~a~~~v~~---ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~E 204 (503)
+-.+ -.-...| .++.||. ++-++.++. +++..-. ..-+.....=++...|++.|++.+--+..++-
T Consensus 158 flaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp-----~~~iittntwsselsklaanaflaqrissins 232 (481)
T KOG2666|consen 158 FLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVP-----REQIITTNTWSSELSKLAANAFLAQRISSINS 232 (481)
T ss_pred HhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCc-----ccceeeccccHHHHHHHHHHHHHHHHHhhhHH
Confidence 2111 1112223 5677874 454554444 4433331 11223334577889999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHH
Q 010702 205 AYDVLKHVGGLSNAELAEIF 224 (503)
Q Consensus 205 a~~l~~~~g~~~~~~i~~~~ 224 (503)
.-++++..| .+..++..++
T Consensus 233 ~salceatg-adv~eva~av 251 (481)
T KOG2666|consen 233 MSALCEATG-ADVSEVAYAV 251 (481)
T ss_pred HHHHHHhcC-CCHHHHHHHh
Confidence 999999999 9988887775
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-06 Score=79.32 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=72.8
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC-CC---Cee---eeCCHHHHHhccCCCcEEEEecC
Q 010702 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG-QL---PLT---GHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 9 IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g-~~---~i~---~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|.|+|+|.||.-+|..|++.|++|+++.|++ ..+.+.+.+..-. .. .+. ...+..+... .+|+||+|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAG---PYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHS---TESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccC---CCcEEEEEec
Confidence 7899999999999999999999999999998 7777766543100 00 011 1112212233 3899999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
.. +++++++.+.+.+.+++.|+-..|+..
T Consensus 77 a~-~~~~~l~~l~~~~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 77 AY-QLEQALQSLKPYLDPNTTIVSLQNGMG 105 (151)
T ss_dssp GG-GHHHHHHHHCTGEETTEEEEEESSSSS
T ss_pred cc-chHHHHHHHhhccCCCcEEEEEeCCCC
Confidence 95 789999999999999888888888863
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.37 E-value=9e-06 Score=70.10 Aligned_cols=112 Identities=14% Similarity=0.217 Sum_probs=81.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+||||||+|.+|......+.+. +++| .++|+++++.+.+.+.. ++..++|.+++++. ++.|+|++++|+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY------GIPVYTDLEELLAD-EDVDAVIIATPPS 73 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------TSEEESSHHHHHHH-TTESEEEEESSGG
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh------cccchhHHHHHHHh-hcCCEEEEecCCc
Confidence 3799999999999999888877 4554 47899999988876653 35689999999984 2489999999997
Q ss_pred hhHHHHHHHHHhcCCCCCEEEec-CCCChhhHHHHHHHHHhcCccE
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (503)
...+-+...+.... .++++- -.....+.+++.+..+++|..+
T Consensus 74 ~h~~~~~~~l~~g~---~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 74 SHAEIAKKALEAGK---HVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp GHHHHHHHHHHTTS---EEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred chHHHHHHHHHcCC---EEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 65544433333221 566662 2235567778888877777653
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-06 Score=86.46 Aligned_cols=110 Identities=17% Similarity=0.087 Sum_probs=78.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++++|||.|.+|..++..|...|.+|+++||++++.+...+.+.. .....++.+.+.+ +|+||.++|.. .
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~-----~~~~~~l~~~l~~---aDiVI~t~p~~-~- 222 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLS-----PFHLSELAEEVGK---IDIIFNTIPAL-V- 222 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCe-----eecHHHHHHHhCC---CCEEEECCChh-h-
Confidence 589999999999999999999999999999998876655543321 1112244455444 99999999864 1
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
+-++....++++.+|||.++..-. +. . +..+++|+..+.+
T Consensus 223 --i~~~~l~~~~~g~vIIDla~~pgg-td-~-~~a~~~Gv~~~~~ 262 (296)
T PRK08306 223 --LTKEVLSKMPPEALIIDLASKPGG-TD-F-EYAEKRGIKALLA 262 (296)
T ss_pred --hhHHHHHcCCCCcEEEEEccCCCC-cC-e-eehhhCCeEEEEE
Confidence 224566678899999999876544 32 1 3456678777654
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.8e-05 Score=73.36 Aligned_cols=116 Identities=9% Similarity=0.075 Sum_probs=82.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+|+|||. |.||+.++..|.++||.|++ .+ +|+||+|+|.. .
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~---------------------------------~~---~DlVilavPv~-~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI---------------------------------KK---ADHAFLSVPID-A 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE---------------------------------CC---CCEEEEeCCHH-H
Confidence 58999987 99999999999999999851 12 89999999985 6
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCChhhhhcC---CcccC--CCCHHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHG---PSLMP--GGSFEAYNNIR 159 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~~~a~~G---~~i~~--gg~~~a~~~v~ 159 (503)
+.++++++. .+|+|.++++.... + .+..|++. |+.| +..+..+ ..+++ ..++++.+.++
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~----~----~~~~~vg~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~ 108 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFK----K----YSGKIVSIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEIN 108 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHH----H----hcCCEEecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHH
Confidence 677776654 37999999875321 1 24568885 7776 4444432 33222 34667778888
Q ss_pred HHHHHHhcccCCCCcEEEeCCcc
Q 010702 160 DILQKVAAQVDDGPCVTYIGEGG 182 (503)
Q Consensus 160 ~ll~~ig~~~~~~~~v~~~G~~G 182 (503)
.+++ | ..++.+.+..
T Consensus 109 ~l~~--G------~~~~~~t~ee 123 (197)
T PRK06444 109 EMFR--G------YHFVEMTADE 123 (197)
T ss_pred HHHc--C------CEEEEeCHHH
Confidence 8887 6 4677776643
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-06 Score=85.97 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=81.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh--
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~-- 84 (503)
+++.|+|+|.+|.+++..|++.|++|+++||++++.+++.+.....+ .+. ..+..+.. +..+|+||.|+|.+.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~--~~~-~~~~~~~~--~~~~DivInatp~gm~~ 192 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYG--EIQ-AFSMDELP--LHRVDLIINATSAGMSG 192 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcC--ceE-Eechhhhc--ccCccEEEECCCCCCCC
Confidence 57999999999999999999999999999999998888776532111 112 22333322 224899999999752
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
.++++.- ....+.++.+++|++...+.+ .+.+..+++|+++++.
T Consensus 193 ~~~~~~~-~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vdG 236 (270)
T TIGR00507 193 NIDEPPV-PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTIDG 236 (270)
T ss_pred CCCCCCC-CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeCC
Confidence 1211100 023467899999998876544 5777778888877753
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.8e-06 Score=84.28 Aligned_cols=127 Identities=17% Similarity=0.113 Sum_probs=91.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCe-ee-eCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPL-TG-HYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~-~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
||+|-|||+|.+|+..|..|+++| ++|++-||++++++++......+ ... .. ..+.+++.+-|++.|+||.++|.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~--v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGK--VEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcccc--ceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 478999999999999999999999 99999999999999887653110 011 11 23444444445558999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe-cccCCCChhh
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEG 139 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~~ 139 (503)
.. -..+++.. ++.|.-++|+|...+.. .++...+.+.|+..+ ++++..|...
T Consensus 79 ~~-~~~i~ka~---i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~n 131 (389)
T COG1748 79 FV-DLTILKAC---IKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGITN 131 (389)
T ss_pred hh-hHHHHHHH---HHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchHH
Confidence 63 33444433 45789999999887665 677777777786554 5777766543
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.7e-06 Score=84.59 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=68.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.++|+|||+|.||..++..|...| .+|+++||++++.+++.+.... .+...++..+.+.. +|+||.+++.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~~---aDvVi~at~~~~ 250 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG----NAVPLDELLELLNE---ADVVISATGAPH 250 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC----eEEeHHHHHHHHhc---CCEEEECCCCCc
Confidence 368999999999999999999866 6799999999988888765321 11222334444444 999999999875
Q ss_pred hHHHHHHHHHhcC-CCCCEEEecCC
Q 010702 85 PVDQTIAALSEHM-SPGDCIIDGGN 108 (503)
Q Consensus 85 ~v~~vl~~l~~~l-~~g~iIId~st 108 (503)
. ...+..+.... .++.+|||.+.
T Consensus 251 ~-~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 251 Y-AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred h-HHHHHHHHhhCCCCCeEEEEeCC
Confidence 4 44455444333 36789999985
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.2e-06 Score=84.43 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=60.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEe-CChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYN-RTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~d-r~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
++|+||| .|.||.+||.+|.++|++|++|+ |++ ++++++++ +|+||+|++.+.
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------------------~l~e~~~~---ADIVIsavg~~~ 213 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------------------DLPAVCRR---ADILVAAVGRPE 213 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------------------CHHHHHhc---CCEEEEecCChh
Confidence 5899999 99999999999999999999995 553 34556666 999999999876
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.++.++ +.+|.+|||++...
T Consensus 214 ~v~~~~------lk~GavVIDvGin~ 233 (296)
T PRK14188 214 MVKGDW------IKPGATVIDVGINR 233 (296)
T ss_pred hcchhe------ecCCCEEEEcCCcc
Confidence 555443 78999999998754
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.4e-06 Score=74.16 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=66.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
..++.|||+|.||+.++..|++.|.+ |+++||+.++.+++.+...... ..+...++..+.... +|+||.++|.+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~-~~~~~~~~~~~~~~~---~DivI~aT~~~~ 87 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVN-IEAIPLEDLEEALQE---ADIVINATPSGM 87 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCS-EEEEEGGGHCHHHHT---ESEEEE-SSTTS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccc-cceeeHHHHHHHHhh---CCeEEEecCCCC
Confidence 36899999999999999999999987 9999999999999887652110 012334445555555 999999999874
Q ss_pred hHHHHHHHHHhcCCCC-CEEEecCC
Q 010702 85 PVDQTIAALSEHMSPG-DCIIDGGN 108 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g-~iIId~st 108 (503)
. .+-.+..+...+. .+++|.+.
T Consensus 88 ~--~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 88 P--IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp T--SSTHHHHTTTCHHCSEEEES-S
T ss_pred c--ccCHHHHHHHHhhhhceecccc
Confidence 4 1113333322222 49999973
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-05 Score=81.31 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=67.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHh----hcccC-CCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDR----AHREG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~----~~~~g-~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|+||+|||+|.||..+|..++..|+ +|.++|+++++.+..... ....+ ..+++...+.++ +.+ +|+||++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~~---aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IAG---SDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HCC---CCEEEEC
Confidence 4699999999999999999999876 999999988765432211 11000 013444455544 344 9999998
Q ss_pred cCCC---------------hhHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
+..+ ..+++++..+.+.. +..++|..+|.....+
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d~~~ 126 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVDAMT 126 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHH
Confidence 7321 12445556666665 5567777777543333
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.5e-05 Score=80.53 Aligned_cols=110 Identities=39% Similarity=0.710 Sum_probs=96.6
Q ss_pred eCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhccCC-cchhHHhhhhhhccccccCCCchh
Q 010702 178 IGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG-GLSNAELAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGEL 255 (503)
Q Consensus 178 ~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g-~~~~~~i~~~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~ 255 (503)
.|.. +++|+++|++.++.++.++|++.++++.| |+|++++.++ |+.|. ++||+++.+.+++.+++ .
T Consensus 164 ~G~~---~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i---~~~g~~~~s~~l~~~~~~~~~~~------~ 231 (298)
T TIGR00872 164 CGSG---HFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARV---WRRGSVIRSWLLDLTAIAFRESP------D 231 (298)
T ss_pred ccHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHH---HcCCchhHhHHHHHHHHHHhcCC------c
Confidence 4555 68999999999999999999999999974 3799999887 78876 69999999999987632 4
Q ss_pred HHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcch
Q 010702 256 VDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLK 299 (503)
Q Consensus 256 ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~ 299 (503)
++.+.+.+.++++|+|++.+|.+.|+|+|++++|++.|+.|..+
T Consensus 232 ~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al~~~~~~~~~ 275 (298)
T TIGR00872 232 LAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDL 275 (298)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 56688787889999999999999999999999999999999876
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.6e-05 Score=81.20 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=72.6
Q ss_pred CcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.++||||+|.||...++.|.. ...+|.+|||++++.+.+.+.-...+ ..+..+.++++++++ +|+|++|+|+..
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g-~~v~~~~~~~eav~~---aDiVitaT~s~~ 204 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYE-VPVRAATDPREAVEG---CDILVTTTPSRK 204 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhC-CcEEEeCCHHHHhcc---CCEEEEecCCCC
Confidence 579999999999997666654 44689999999999988876432111 135678999999987 999999998864
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
+ ++. ...+++|..|...++..|.
T Consensus 205 P---~~~--~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 205 P---VVK--ADWVSEGTHINAIGADAPG 227 (325)
T ss_pred c---Eec--HHHcCCCCEEEecCCCCcc
Confidence 3 221 1346899999888876653
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.8e-05 Score=71.65 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=78.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
++|||||+|.+|..+...+.+. +++ |.+|||+.+++.++.+.- +....++++|+++. +|+++.|...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~------~~~~~s~ide~~~~---~DlvVEaAS~- 70 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV------GRRCVSDIDELIAE---VDLVVEAASP- 70 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc------CCCccccHHHHhhc---cceeeeeCCH-
Confidence 4799999999999998877654 354 779999999998877643 23445889999876 9999999876
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccE--ecccCCCCh
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY--LGMGVSGGE 137 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~--i~~pvsgg~ 137 (503)
+++++...+++.. ..+-+|+..+.-..+...++...+.+.+-+. +..+-.||-
T Consensus 71 ~Av~e~~~~~L~~-g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGl 125 (255)
T COG1712 71 EAVREYVPKILKA-GIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGL 125 (255)
T ss_pred HHHHHHhHHHHhc-CCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhH
Confidence 4677766555542 1234455444444334444444455544333 333444543
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.8e-05 Score=77.64 Aligned_cols=87 Identities=16% Similarity=0.281 Sum_probs=69.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|+|||.|.-|.+-|+||.++|.+|++--|.... .+...+.| +. ..+++|++.. +|+|++.+|+. .
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dG-------f~-V~~v~ea~k~---ADvim~L~PDe-~ 86 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDG-------FK-VYTVEEAAKR---ADVVMILLPDE-Q 86 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcC-------CE-eecHHHHhhc---CCEEEEeCchh-h
Confidence 58999999999999999999999999987776555 33333333 33 5689999987 99999999995 5
Q ss_pred HHHHHH-HHHhcCCCCCEEEe
Q 010702 86 VDQTIA-ALSEHMSPGDCIID 105 (503)
Q Consensus 86 v~~vl~-~l~~~l~~g~iIId 105 (503)
-.++++ ++.|.|.+|+.+.-
T Consensus 87 q~~vy~~~I~p~Lk~G~aL~F 107 (338)
T COG0059 87 QKEVYEKEIAPNLKEGAALGF 107 (338)
T ss_pred HHHHHHHHhhhhhcCCceEEe
Confidence 677775 99999999986543
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.7e-05 Score=77.75 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHH----HHhhcccC-CCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDET----LDRAHREG-QLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l----~~~~~~~g-~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|||+|||+|.||..+|..|+.+|+ +|.++|++++..+.. .+...... ..+++.+.+.++ +++ +|+||+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~---aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TAN---SDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCC---CCEEEEcC
Confidence 589999999999999999999887 899999976643311 11111000 014556677776 444 99999999
Q ss_pred CCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCChhhHH
Q 010702 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (503)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~ 115 (503)
+.+. .++++++.+.++. ++.+||..||-....+.
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~t~ 126 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAMTY 126 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHH
Confidence 7321 2344456666665 56788888885544443
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.2e-05 Score=79.70 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=61.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|+|||. |.||.+||.+|.++|++|++|... +.++++.+++ +|+||.+++.+..
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------------------t~~l~~~~~~---ADIVI~avg~~~~ 214 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------------------TRNLAEVARK---ADILVVAIGRGHF 214 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEecCcccc
Confidence 57999999 999999999999999999999311 2367777777 9999999998766
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++... +++|.+|||+|...
T Consensus 215 v~~~~------ik~GavVIDvgin~ 233 (284)
T PRK14179 215 VTKEF------VKEGAVVIDVGMNR 233 (284)
T ss_pred CCHHH------ccCCcEEEEeccee
Confidence 55543 78999999998654
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.2e-05 Score=68.27 Aligned_cols=98 Identities=17% Similarity=0.220 Sum_probs=62.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHhC-CCcEEEE-eCChhHHHHHHHhhcccCCCCee-eeCCHHHHHhccCCCcEEEEecCCC
Q 010702 8 RIGLAG-LAVMGQNLALNVAEK-GFPISVY-NRTTSKVDETLDRAHREGQLPLT-GHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~-G~~V~v~-dr~~~~~~~l~~~~~~~g~~~i~-~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
||+||| .|.+|..++..|.++ ++++... +++.++.+.+...+.... .+. ...+..++.. .++|+||+|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~DvV~~~~~~~ 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLK--GEVVLELEPEDFEE--LAVDIVFLALPHG 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccc--cccccccccCChhh--cCCCEEEEcCCcH
Confidence 689999 599999999999985 7887655 665443333332221100 010 0111122221 2389999999997
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
...+++..+.+.+.+|.+|||+|+..
T Consensus 77 -~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 77 -VSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred -HHHHHHHHHHhhhcCCCEEEECCccc
Confidence 55556555666678999999999874
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.9e-05 Score=71.34 Aligned_cols=99 Identities=20% Similarity=0.312 Sum_probs=71.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-hcccCCCCeeeeCCHHHHHhc--cCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTGHYTPRDFVLS--IQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~g~~~i~~~~s~~e~~~~--l~~~dvIil~vp~~ 83 (503)
|+|.|||+|.+|..+|+.|.+.||+|.+.|+++++++++... .... .+....+-.+++++ +.++|+++.++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~---~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTH---VVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceE---EEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 589999999999999999999999999999999998885542 1110 13344444555443 45699999998886
Q ss_pred hhHHHHHHHHHhc-CCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEH-MSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~-l~~g~iIId~st~ 109 (503)
.+..++-.+... +....+|.-..+.
T Consensus 78 -~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 78 -EVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 566666555533 5555666665554
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00012 Score=74.69 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=65.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHH--H--HHhhcccC-CCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDE--T--LDRAHREG-QLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~--l--~~~~~~~g-~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
..+||+|||+|.||..+|..++..|+ +|.++|+++++... + .......+ ..++....+.+++ ++ +|+||+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l-~~---aDiVI~ 80 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDI-AG---SDVVIV 80 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHh-CC---CCEEEE
Confidence 34689999999999999999999996 89999999985421 1 11100000 0135545666543 44 999999
Q ss_pred ecCCC----h----------------hHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 79 LVKAG----S----------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 79 ~vp~~----~----------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
+.-.+ . .+++++..+.+.. +..++|..||.....+
T Consensus 81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~di~t 135 (321)
T PTZ00082 81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPLDVMV 135 (321)
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHH
Confidence 76221 1 1334445665655 4457777777543333
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.6e-05 Score=68.05 Aligned_cols=91 Identities=11% Similarity=0.121 Sum_probs=62.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
+++.|+|.|..|+++|+.|...|-+|++++++|-+.-+....| ++. .+.++++.. +|++|.++-....+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dG-------f~v-~~~~~a~~~---adi~vtaTG~~~vi 92 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDG-------FEV-MTLEEALRD---ADIFVTATGNKDVI 92 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT--------EE-E-HHHHTTT----SEEEE-SSSSSSB
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcC-------cEe-cCHHHHHhh---CCEEEECCCCcccc
Confidence 4799999999999999999999999999999998765555544 333 467888776 99999887654321
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
. .+..+.+++|.++.+.+....
T Consensus 93 ~---~e~~~~mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 93 T---GEHFRQMKDGAILANAGHFDV 114 (162)
T ss_dssp ----HHHHHHS-TTEEEEESSSSTT
T ss_pred C---HHHHHHhcCCeEEeccCcCce
Confidence 1 344556889999998887643
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.2e-05 Score=81.74 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=67.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
..+|+|||+|.||..++..|...|. +|+++||++++.+.+.+...... ..+....+..+++.. +|+||.|++.+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~-i~~~~~~dl~~al~~---aDVVIsAT~s~~ 341 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVE-IIYKPLDEMLACAAE---ADVVFTSTSSET 341 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCc-eEeecHhhHHHHHhc---CCEEEEccCCCC
Confidence 3579999999999999999999997 69999999999988876531100 011223455555555 999999987664
Q ss_pred h--HHHHHHHHHhcC---CCCCEEEecCC
Q 010702 85 P--VDQTIAALSEHM---SPGDCIIDGGN 108 (503)
Q Consensus 85 ~--v~~vl~~l~~~l---~~g~iIId~st 108 (503)
. .++.++.+.+.- .+..++||.+-
T Consensus 342 pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 342 PLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred CeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 4 334444443211 12247888764
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.4e-05 Score=81.40 Aligned_cols=195 Identities=17% Similarity=0.132 Sum_probs=110.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC------hhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRT------TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~------~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
++|+|||+|.+|.+.|.+|...|++|++--|. .+..+.+.+.+ +. ..+++|++.. +|+|++.+
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dG-------F~-v~~~~Ea~~~---ADvVviLl 105 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG-------FK-VGTYEELIPQ---ADLVINLT 105 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcC-------Cc-cCCHHHHHHh---CCEEEEcC
Confidence 68999999999999999999999999944433 33444443332 33 3678888887 99999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe-cccCCCChhhhh-----cCC-ccc-CC---
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEGAR-----HGP-SLM-PG--- 149 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~~a~-----~G~-~i~-~g--- 149 (503)
|+. .-..+.+++.+.+++|.++.-. -+.-.. .......+++..+ -+|=..|....+ .|. +++ +-
T Consensus 106 PDt-~q~~v~~~i~p~LK~Ga~L~fs-HGFni~---~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~q 180 (487)
T PRK05225 106 PDK-QHSDVVRAVQPLMKQGAALGYS-HGFNIV---EVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPEN 180 (487)
T ss_pred ChH-HHHHHHHHHHhhCCCCCEEEec-CCceee---eCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecC
Confidence 997 4556668999999999887643 222100 0011122344433 345444433221 232 222 22
Q ss_pred -CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHH-hHHHHHHHHHHHHHHH-HHHHHHHhCCCCHHHHHH
Q 010702 150 -GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVK-MVHNGIEYGDMQLISE-AYDVLKHVGGLSNAELAE 222 (503)
Q Consensus 150 -g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK-~v~N~i~~~~~~~~~E-a~~l~~~~g~~~~~~i~~ 222 (503)
.+..+++.+...-..+|+.- .-++...- ..-...- +-.+++.-+.++.+.| .+..+.+.| ++|+....
T Consensus 181 D~~g~a~~~ala~a~~iG~~r---agv~~ttf-~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G-~~pe~A~k 251 (487)
T PRK05225 181 DPKGEGMAIAKAWAAATGGHR---AGVLESSF-VAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEG-TDPAYAEK 251 (487)
T ss_pred CCCchHHHHHHHHHHHhCCCc---cceeecch-HHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcC-CCHHHHHH
Confidence 23346777777778888421 11222110 0000000 1223344444443333 345556667 99887653
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.9e-05 Score=76.14 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=73.7
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE-KGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~-~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+++|||+|.+|...+..++. .+. +|.+|||++++.+++.+.........+..+.+.++++.+ +|+|+.|+|...
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDiVi~aT~s~~ 204 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEE---ADIIVTVTNAKT 204 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEccCCCC
Confidence 479999999999998877753 454 699999999999888764321100134567888888877 999999999874
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
. ++. ..+++|..|+..++..|...
T Consensus 205 p---~i~---~~l~~G~hV~~iGs~~p~~~ 228 (325)
T PRK08618 205 P---VFS---EKLKKGVHINAVGSFMPDMQ 228 (325)
T ss_pred c---chH---HhcCCCcEEEecCCCCcccc
Confidence 3 333 45789999999888766443
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.6e-05 Score=75.33 Aligned_cols=117 Identities=9% Similarity=0.103 Sum_probs=81.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-C-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK-G-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.++||||+|.+|...++.+..- . -+|.+|||++++.++|.++.....+..+..++++++++.+ +|+|+.+++...
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~---aDIV~taT~s~~ 194 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD---ADTITSITNSDT 194 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEecCCCC
Confidence 4799999999999998888753 2 3699999999999988765432101246778999999988 999999998764
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
+ +++ ..++++|..|.-.++..|...+--.+.+.....-|+|.
T Consensus 195 P---~~~--~~~l~pg~hV~aiGs~~p~~~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 195 P---IFN--RKYLGDEYHVNLAGSNYPNRREAEHSVLNDADIVVTEH 236 (301)
T ss_pred c---Eec--HHHcCCCceEEecCCCCCCcccCCHHHHHhCCEEEECC
Confidence 3 331 13567898888887766543322223333322345663
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.2e-05 Score=79.52 Aligned_cols=89 Identities=12% Similarity=0.040 Sum_probs=69.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|+|||.|.+|+.+|..+...|.+|+++++++.+.......+ +. ..+++++++. +|+|++++..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G-------~~-~~~leell~~---ADIVI~atGt---- 319 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEG-------YQ-VVTLEDVVET---ADIFVTATGN---- 319 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcC-------ce-eccHHHHHhc---CCEEEECCCc----
Confidence 5799999999999999999999999999999987754433332 22 3467888776 9999998643
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCC
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~ 110 (503)
+.++ .+....+++|.+|++.+...
T Consensus 320 ~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 320 KDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred ccccCHHHHhccCCCcEEEEcCCCc
Confidence 3455 46677789999999998873
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.4e-05 Score=81.29 Aligned_cols=105 Identities=13% Similarity=0.244 Sum_probs=74.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++++|+|+|.+|.+++..|++.|++|.++||++++.+.+.+.... . ..+.+++ ..+..+|+||.|+|.+..+
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~------~-~~~~~~~-~~l~~~DiVInatP~g~~~ 404 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQG------K-AFPLESL-PELHRIDIIINCLPPSVTI 404 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc------c-eechhHh-cccCCCCEEEEcCCCCCcc
Confidence 579999999999999999999999999999999988877654211 1 1122222 1234599999999998643
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
... +. .+|+|+....+.+. +.+.++++|+..++
T Consensus 405 ~~~-------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~ 437 (477)
T PRK09310 405 PKA-------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIY 437 (477)
T ss_pred hhH-------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence 321 11 38999988755433 55667777776554
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00018 Score=73.01 Aligned_cols=97 Identities=16% Similarity=0.196 Sum_probs=60.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHH-HHHhhcccCCC-C-eeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDE-TLDRAHREGQL-P-LTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~-l~~~~~~~g~~-~-i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|||+|||+|.+|.++|..|+.+| .+|.++|+++++.+. ..+........ . ...+.+.++ +++ +|+||++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l~~---aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-CKG---ADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH-hCC---CCEEEEccC
Confidence 48999999999999999999999 589999999877653 21111000000 0 112334443 343 999999997
Q ss_pred CCh---------------hHHHHHHHHHhcCCCCCEEEecCC
Q 010702 82 AGS---------------PVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 82 ~~~---------------~v~~vl~~l~~~l~~g~iIId~st 108 (503)
.+. .++++.+.+..+-+. .+++..+|
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~-giiiv~tN 117 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPD-AILLVVTN 117 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEecC
Confidence 531 134445566665544 44554554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00011 Score=74.18 Aligned_cols=86 Identities=10% Similarity=0.232 Sum_probs=59.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
.||+|||+|.||..++..+.++ ++++. +|++++ ++.. +. . ++....+.+++.. ++|+|++|+|+.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~---~~-~-----~v~~~~d~~e~l~---~iDVViIctPs~ 71 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD---TE-T-----PVYAVADDEKHLD---DVDVLILCMGSA 71 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh---hc-C-----CccccCCHHHhcc---CCCEEEEcCCCc
Confidence 6999999999999999999876 67866 689985 3322 11 1 2233445555544 499999999987
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
...+. +.+.|..|.-+||+.-
T Consensus 72 th~~~----~~~~L~aG~NVV~s~~ 92 (324)
T TIGR01921 72 TDIPE----QAPYFAQFANTVDSFD 92 (324)
T ss_pred cCHHH----HHHHHHcCCCEEECCC
Confidence 65443 3444567777888754
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.6e-05 Score=65.57 Aligned_cols=107 Identities=20% Similarity=0.266 Sum_probs=69.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHh-CCCcEE-EEeCChhH-----HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGL-AVMGQNLALNVAE-KGFPIS-VYNRTTSK-----VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~-~G~~V~-v~dr~~~~-----~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
|||+|+|+ |.||+.++..+.+ .|+++. +++|+++. +.++.... . .++...++++++.+. +|+||-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~---~~~~v~~~l~~~~~~---~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-P---LGVPVTDDLEELLEE---ADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T----SSBEBS-HHHHTTH----SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-C---cccccchhHHHhccc---CCEEEE
Confidence 58999999 9999999999998 788854 67888721 11122111 1 146778899999888 999988
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~ 124 (503)
...+ ..+.+.++..+. .|.-+|-++|+......+..+.+.++
T Consensus 74 fT~p-~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 74 FTNP-DAVYDNLEYALK---HGVPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp ES-H-HHHHHHHHHHHH---HT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred cCCh-HHhHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 8733 455655555544 47788888888865554555555444
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00015 Score=75.64 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=73.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
.+|+|+|.|.+|..+|+.+...|.+|.++|+++.+.......+ +. ..+.++++.. +|+||.++..
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G-------~~-v~~leeal~~---aDVVItaTG~---- 260 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDG-------FR-VMTMEEAAKI---GDIFITATGN---- 260 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcC-------CE-eCCHHHHHhc---CCEEEECCCC----
Confidence 5799999999999999999999999999999998765544433 22 2356777665 9999987654
Q ss_pred HHHHH-HHHhcCCCCCEEEecCCCCh-hhHHHHHHHH
Q 010702 87 DQTIA-ALSEHMSPGDCIIDGGNEWY-LNTERRIHEA 121 (503)
Q Consensus 87 ~~vl~-~l~~~l~~g~iIId~st~~~-~~t~~~~~~l 121 (503)
..+++ +....+++|.++++.+.... -+...+.+.+
T Consensus 261 ~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 261 KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELA 297 (406)
T ss_pred HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence 34453 46677899999999888654 3444444433
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.3e-05 Score=78.15 Aligned_cols=98 Identities=16% Similarity=0.226 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCee-eeCCHHHHHhccCCCcEEEEecCC-Ch
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLT-GHYTPRDFVLSIQRPRSVIILVKA-GS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~-~~~s~~e~~~~l~~~dvIil~vp~-~~ 84 (503)
.+|.|||+|.+|...++.+...|.+|.++||++++.+.+...... .+. ...+.+++.+.++.+|+||.+++. +.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----RIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----eeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 469999999999999999999999999999999988776654321 011 123344444445559999999743 11
Q ss_pred hHHHHH-HHHHhcCCCCCEEEecCC
Q 010702 85 PVDQTI-AALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 85 ~v~~vl-~~l~~~l~~g~iIId~st 108 (503)
....++ .+.+..++++.+|||.+.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEec
Confidence 111222 555566789999999774
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.1e-05 Score=78.66 Aligned_cols=95 Identities=19% Similarity=0.184 Sum_probs=64.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.+|+|||+|.||..++..|...| .+|+++||++++.+.+.+.... ......++.+.+.. +|+||.|++.+..
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~----~~i~~~~l~~~l~~---aDvVi~aT~s~~~ 253 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG----EAVKFEDLEEYLAE---ADIVISSTGAPHP 253 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----eEeeHHHHHHHHhh---CCEEEECCCCCCc
Confidence 57999999999999999999999 7899999999988777664211 11222344555555 9999999877644
Q ss_pred H--HHHHHHHHhcCCCCCEEEecCC
Q 010702 86 V--DQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v--~~vl~~l~~~l~~g~iIId~st 108 (503)
+ .+.+......-..+.+++|.+.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 2 1222222211112348888863
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00011 Score=74.22 Aligned_cols=96 Identities=14% Similarity=0.048 Sum_probs=73.3
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE-KGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~-~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|+|||+|.+|...+..+.. .+. +|.+|||++++.+++.++....+ ..+. +.+.++++++ +|+|+.|+|...
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~-~~~~-~~~~~~av~~---aDiVitaT~s~~ 200 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG-PTAE-PLDGEAIPEA---VDLVVTATTSRT 200 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC-CeeE-ECCHHHHhhc---CCEEEEccCCCC
Confidence 579999999999999999975 554 69999999999998887643211 1222 5788888887 999999999875
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhh
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLN 113 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~ 113 (503)
+ ++.. .+++|..|...++..|..
T Consensus 201 P---l~~~---~~~~g~hi~~iGs~~p~~ 223 (304)
T PRK07340 201 P---VYPE---AARAGRLVVAVGAFTPDM 223 (304)
T ss_pred c---eeCc---cCCCCCEEEecCCCCCCc
Confidence 4 3332 368999999988776643
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00029 Score=70.36 Aligned_cols=101 Identities=14% Similarity=0.133 Sum_probs=73.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--C-----CcEEEEeCChh------HHHHHHH-hhcccCCC-------CeeeeCCHHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--G-----FPISVYNRTTS------KVDETLD-RAHREGQL-------PLTGHYTPRD 65 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G-----~~V~v~dr~~~------~~~~l~~-~~~~~g~~-------~i~~~~s~~e 65 (503)
.||+|||.|++|+++|+.+.++ + .+|..|-+..+ ++.+... ...+..++ ++...+++.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 4799999999999999998864 2 25777754432 2222221 11110011 5777888888
Q ss_pred HHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 66 FVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 66 ~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
++.+ +|++|..+|. +.+.+++++|..+++++...|.++.+..
T Consensus 102 a~~d---ADilvf~vPh-Qf~~~ic~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 102 AAKD---ADILVFVVPH-QFIPRICEQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred Hhcc---CCEEEEeCCh-hhHHHHHHHHhcccCCCCeEEEeeccee
Confidence 8877 9999999999 5899999999999999999999877653
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00024 Score=69.47 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=77.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC---Cc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG---FP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G---~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.+||||||+|.||..++..|.+.+ ++ +.+++|++++.+++.+. ...+.++++++.. ++|+|+.|-.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------~~~~~~l~~ll~~--~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------VALLDGLPGLLAW--RPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------CcccCCHHHHhhc--CCCEEEECCC
Confidence 368999999999999999987642 54 45789998888777653 3567899997432 3999999987
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhh--HH-HHHHHHHhcC-ccEecccCCCChh
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN--TE-RRIHEASQKG-LLYLGMGVSGGEE 138 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~--t~-~~~~~l~~~g-i~~i~~pvsgg~~ 138 (503)
. .++++....++. .|.-++-.|.+-..+ .. ++.+..++.| --|+..+-.||-.
T Consensus 72 ~-~av~e~~~~iL~---~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD 128 (267)
T PRK13301 72 Q-QAIAEHAEGCLT---AGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLD 128 (267)
T ss_pred H-HHHHHHHHHHHh---cCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHH
Confidence 7 467777666654 454444455443332 22 2333333333 3356666556644
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00013 Score=73.74 Aligned_cols=101 Identities=19% Similarity=0.185 Sum_probs=63.3
Q ss_pred EEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHH----HHhhcccC-CCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 9 IGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDET----LDRAHREG-QLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 9 IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l----~~~~~~~g-~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|+|||+|.||..+|..|+.+|+ +|+++|+++++.+.. .......+ ..+++...+.++ +++ +|+||+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~-l~d---ADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYED-IAG---SDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHH-hCC---CCEEEEecCC
Confidence 6899999999999999998887 999999998754321 11110000 013444455544 344 9999998732
Q ss_pred C---------------hhHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 83 G---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 83 ~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
+ ..+++++..+.+.. +..++|..||.....+
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~di~t 122 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLDVMT 122 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHH
Confidence 1 11334556666655 5567677776543333
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00012 Score=77.43 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=53.8
Q ss_pred CcEEEEcccHHHHHHHH--HH----HhCCCcEEEEeCChhHHHHHHHhhcc----cC-CCCeeeeCCHHHHHhccCCCcE
Q 010702 7 SRIGLAGLAVMGQNLAL--NV----AEKGFPISVYNRTTSKVDETLDRAHR----EG-QLPLTGHYTPRDFVLSIQRPRS 75 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~--~L----~~~G~~V~v~dr~~~~~~~l~~~~~~----~g-~~~i~~~~s~~e~~~~l~~~dv 75 (503)
+||+|||.|.||.+++. .+ ..+|++|.+||+++++.+........ .+ ..++..++++++++++ +|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~---AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG---ADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC---CCE
Confidence 47999999999998666 34 45688999999999887665432110 00 1146677888888777 999
Q ss_pred EEEecCC
Q 010702 76 VIILVKA 82 (503)
Q Consensus 76 Iil~vp~ 82 (503)
||++++.
T Consensus 78 Vi~ai~~ 84 (423)
T cd05297 78 VINTIQV 84 (423)
T ss_pred EEEeeEe
Confidence 9999985
|
linked to 3D####ucture |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00024 Score=72.67 Aligned_cols=112 Identities=14% Similarity=0.191 Sum_probs=78.3
Q ss_pred CCCcEEEEcccHH-HHHHHHHHHhCCC---cEEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhccCCCcEEEEe
Q 010702 5 ALSRIGLAGLAVM-GQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 5 ~~~~IgIIGlG~m-G~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~~~~l~~~dvIil~ 79 (503)
+++||||||+|.+ +...+..+.+.+. -|.++|+++++.+++.++.. + ..++|++++++. ++.|+|+++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~------~~~~~~~~~~ll~~-~~iD~V~Ia 74 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG------IAKAYTDLEELLAD-PDIDAVYIA 74 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEEc
Confidence 3579999999854 4668888888763 36688999999988887642 3 478899999986 236999999
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEec--CCCChhhHHHHHHHHHhcCcc
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDG--GNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~--st~~~~~t~~~~~~l~~~gi~ 127 (503)
+|+....+-++.. |..|+-|+.- =+....+.+++.+..+++|..
T Consensus 75 tp~~~H~e~~~~A----L~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~ 120 (342)
T COG0673 75 TPNALHAELALAA----LEAGKHVLCEKPLALTLEEAEELVELARKAGVK 120 (342)
T ss_pred CCChhhHHHHHHH----HhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCc
Confidence 9998776655444 3455555442 122345666676766666554
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00034 Score=80.73 Aligned_cols=122 Identities=13% Similarity=0.091 Sum_probs=85.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-Cc-------------EEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhcc
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-FP-------------ISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSI 70 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~~-------------V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~~~~l 70 (503)
+++|+|||+|.||...|..|++.. ++ |++.|++++.++++.+..... ..+.. +.+.+++.+.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~--~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA--EAVQLDVSDSESLLKYV 646 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCC--ceEEeecCCHHHHHHhh
Confidence 568999999999999999998753 33 899999999888877643110 01334 56778887755
Q ss_pred CCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCC
Q 010702 71 QRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVS 134 (503)
Q Consensus 71 ~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvs 134 (503)
+.+|+||+|+|.... ..++.. .+..|.-+++.+ .....+.++.+..++.|+.++. ++..
T Consensus 647 ~~~DaVIsalP~~~H-~~VAka---AieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~e~GlD 706 (1042)
T PLN02819 647 SQVDVVISLLPASCH-AVVAKA---CIELKKHLVTAS-YVSEEMSALDSKAKEAGITILCEMGLD 706 (1042)
T ss_pred cCCCEEEECCCchhh-HHHHHH---HHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEECCccC
Confidence 679999999998643 223332 345677788887 4455666777777788876653 4433
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.3e-05 Score=79.17 Aligned_cols=95 Identities=20% Similarity=0.191 Sum_probs=64.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.+|+|||+|.||..++..|...|. +|+++||++++.+.+.+.... .+....+..+.+. .+|+||.|++.+..
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~---~aDvVI~aT~s~~~ 255 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG----EAIPLDELPEALA---EADIVISSTGAPHP 255 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC----cEeeHHHHHHHhc---cCCEEEECCCCCCc
Confidence 579999999999999999999997 799999999998877765311 1222233444444 49999999987644
Q ss_pred H--HHHHHHHHh-cCCCCCEEEecCC
Q 010702 86 V--DQTIAALSE-HMSPGDCIIDGGN 108 (503)
Q Consensus 86 v--~~vl~~l~~-~l~~g~iIId~st 108 (503)
+ .+.+..... .-..+.++||.+.
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 3 222222211 1124578899874
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00017 Score=73.31 Aligned_cols=97 Identities=15% Similarity=0.263 Sum_probs=74.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+++|||+|.++...++.+..- --+|.+|||++++.+.+.+.....+ ..+..+++.++++++ +|+|+.+++...
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~-~~v~~~~~~~~av~~---ADIV~taT~s~~ 204 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALG-FAVNTTLDAAEVAHA---ANLIVTTTPSRE 204 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcC-CcEEEECCHHHHhcC---CCEEEEecCCCC
Confidence 5799999999999998887753 2479999999999998876432211 256778899999987 999999998764
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
+ +++ ...+++|..|+-.++..|.
T Consensus 205 P---~~~--~~~l~~G~hi~~iGs~~p~ 227 (315)
T PRK06823 205 P---LLQ--AEDIQPGTHITAVGADSPG 227 (315)
T ss_pred c---eeC--HHHcCCCcEEEecCCCCcc
Confidence 3 332 1357799999988876653
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00028 Score=70.02 Aligned_cols=119 Identities=15% Similarity=0.161 Sum_probs=73.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCCh--hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTT--SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~--~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|+||||||+|.||+.++..+.+. +.++. +++++. ++....... ++..+++++++ . .++|+|+.|.|
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~-------~~~~~~d~~~l-~--~~~DvVve~t~ 70 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGE-------AVRVVSSVDAL-P--QRPDLVVECAG 70 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhcc-------CCeeeCCHHHh-c--cCCCEEEECCC
Confidence 46999999999999999999876 45543 444432 222221111 24567888887 3 34899999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCC---ChhhHHHHHHHHHhcCcc-EecccCCCChh
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNE---WYLNTERRIHEASQKGLL-YLGMGVSGGEE 138 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~---~~~~t~~~~~~l~~~gi~-~i~~pvsgg~~ 138 (503)
.. ...+..... |..|.-++..+.. ......++.+..++.|.. |+..+..|+..
T Consensus 71 ~~-~~~e~~~~a---L~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d 127 (265)
T PRK13303 71 HA-ALKEHVVPI---LKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGID 127 (265)
T ss_pred HH-HHHHHHHHH---HHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHH
Confidence 85 444444444 4456666655554 222334556666666654 44555555543
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00063 Score=58.20 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=70.2
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCCChhH
Q 010702 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 9 IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~~~~v 86 (503)
|-|+|.|.+|..++..|.+.+.+|.+.|++++.++.+.+.+..- +.+..+-.+..+ .+++++.|+++.+++...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~----i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEV----IYGDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEE----EES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccc----ccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 56899999999999999997779999999999999988776321 222222233333 345689999999886433
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
..++..+....+...+++-..+. +..+.++..|+..+
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~~~------~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVNDP------ENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEESSH------HHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHCCCCeEEEEECCH------HHHHHHHHCCcCEE
Confidence 33334444434344566554432 22344555566544
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00018 Score=73.59 Aligned_cols=96 Identities=13% Similarity=0.229 Sum_probs=70.6
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVA-EKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~-~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+++|||+|.+|...+..|+ ..+. +|.+|+|++++.+++.+.....-+..+...+++++++.+ +|+|+.|+|...
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~---aDiVvtaT~s~~ 206 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSG---ADIIVTTTPSET 206 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhcc---CCEEEEecCCCC
Confidence 47999999999999999997 3664 699999999999988765321100134557888888877 999999998864
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+ ++. ...+++|..|...+.-.
T Consensus 207 p---~i~--~~~l~~g~~i~~vg~~~ 227 (326)
T TIGR02992 207 P---ILH--AEWLEPGQHVTAMGSDA 227 (326)
T ss_pred c---Eec--HHHcCCCcEEEeeCCCC
Confidence 3 332 12467888888776543
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0002 Score=75.28 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=70.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
.+|+|+|.|.+|..+|..+...|.+|+++|+++.+.......+ +. ..+.+++++. +|+||.++..
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G-------~~-v~~l~eal~~---aDVVI~aTG~---- 277 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDG-------FR-VMTMEEAAEL---GDIFVTATGN---- 277 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcC-------CE-ecCHHHHHhC---CCEEEECCCC----
Confidence 4799999999999999999999999999999998765544432 23 2467777766 9999988744
Q ss_pred HHHHH-HHHhcCCCCCEEEecCCCCh
Q 010702 87 DQTIA-ALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 87 ~~vl~-~l~~~l~~g~iIId~st~~~ 111 (503)
..+++ .....+++|.++++.+....
T Consensus 278 ~~vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 278 KDVITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 33453 56677899999999887643
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=9.2e-05 Score=73.97 Aligned_cols=117 Identities=18% Similarity=0.118 Sum_probs=75.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.++.|+|+|.+|++++..|+..| .+|++++|+.++.+++.+.....+ .+....+..+.+ ..+|+||.++|.+..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~--~~~~~~~~~~~~---~~~DivInaTp~g~~ 198 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG--KAELDLELQEEL---ADFDLIINATSAGMS 198 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ceeecccchhcc---ccCCEEEECCcCCCC
Confidence 57999999999999999999999 689999999999888876532110 011111222333 349999999997632
Q ss_pred HHH-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 86 VDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 86 v~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
-.. ...-....++++.+|+|..- .|..| .+.+..+++|+..++
T Consensus 199 ~~~~~~~~~~~~l~~~~~v~DivY-~P~~T-~ll~~A~~~G~~~~~ 242 (278)
T PRK00258 199 GELPLPPLPLSLLRPGTIVYDMIY-GPLPT-PFLAWAKAQGARTID 242 (278)
T ss_pred CCCCCCCCCHHHcCCCCEEEEeec-CCCCC-HHHHHHHHCcCeecC
Confidence 100 00001134677899999976 34444 455556677765443
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00025 Score=63.40 Aligned_cols=122 Identities=18% Similarity=0.252 Sum_probs=75.8
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+|.|||+|.+|+.++.+|+..|+ +++++|.+.-....+..+... ....+-..+....+.+..+. +++-+.+.+....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCcEEEEEeeecC
Confidence 58999999999999999999998 699999875444333322100 00000011222233333322 4555655554311
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
-.. . ...+.+-++||+++.. +.....+.+.+.+.++.|++++..|
T Consensus 80 ~~~-~---~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 80 EDN-L---DDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hhh-H---HHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 111 1 3345678999999887 4556667778888899999988776
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00029 Score=72.13 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=69.6
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
++|+|||+|.+|...+..+.. .+ .+|.+|+|++++.+++.+......+..+....++++++.+ +|+|+.++|...
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~---aDiVi~aT~s~~ 209 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAG---ADIIVTTTPSEE 209 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHcc---CCEEEEeeCCCC
Confidence 579999999999998888875 45 4799999999999998875321100134567888888877 999999998864
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+ ++.. ..+.+|..|...++..
T Consensus 210 p---~i~~--~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 210 P---ILKA--EWLHPGLHVTAMGSDA 230 (330)
T ss_pred c---EecH--HHcCCCceEEeeCCCC
Confidence 3 3322 1356787777765543
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00043 Score=70.49 Aligned_cols=104 Identities=14% Similarity=0.186 Sum_probs=67.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~---~~~~-~g-~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
.+||+|||+|.||.++|..++..| .+|.++|+++++.+...- .... .+ ..+++...++++ +++ +|+||++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~-l~~---ADiVVit 80 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYED-IKD---SDVVVIT 80 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHH-hCC---CCEEEEC
Confidence 368999999999999999999999 689999999865432111 1000 00 013444456664 354 9999999
Q ss_pred c--CCC-------------hhHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 80 V--KAG-------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 80 v--p~~-------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
. |.. ..++++...+.+.. +..++|..||.....+
T Consensus 81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~di~t 129 (319)
T PTZ00117 81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPLDCMV 129 (319)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHHHHH
Confidence 8 321 22445556666654 5667777777543333
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00032 Score=74.00 Aligned_cols=88 Identities=14% Similarity=0.081 Sum_probs=68.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|+|+|.|.+|+.+|+.+...|.+|.++++++.+.......+ +.. .+.++++.. +|+|+.+....
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G-------~~v-v~leEal~~---ADVVI~tTGt~--- 320 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG-------YQV-LTLEDVVSE---ADIFVTTTGNK--- 320 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC-------Cee-ccHHHHHhh---CCEEEECCCCc---
Confidence 5799999999999999999999999999999987754444433 222 367777776 99999865442
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCC
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~ 109 (503)
.++ .+.+..+++|.++++.+..
T Consensus 321 -~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 321 -DIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred -cchHHHHHhcCCCCCEEEEcCCC
Confidence 333 5566778999999999884
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00027 Score=73.46 Aligned_cols=96 Identities=20% Similarity=0.233 Sum_probs=67.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
..++.|||+|.||.-.|.+|+++| .+|++.||+.+++.+++++... -+.+++++...|..+|+||.++..+.
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~-------~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA-------EAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC-------eeecHHHHHHhhhhCCEEEEecCCCc
Confidence 357999999999999999999999 5799999999999999876421 13355555555555999999976543
Q ss_pred hH--HHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PV--DQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v--~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.+ +..+...... ++.-++||.+..
T Consensus 251 ~ii~~~~ve~a~~~-r~~~livDiavP 276 (414)
T COG0373 251 PIITREMVERALKI-RKRLLIVDIAVP 276 (414)
T ss_pred cccCHHHHHHHHhc-ccCeEEEEecCC
Confidence 32 2222322221 122588888753
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00047 Score=69.03 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=76.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|||+|-+|++++..|++.|. +|+++||++++.+++.+...... .+......+++...+..+|+||-|+|.+..
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~--~~~~~~~~~~~~~~~~~~DiVInaTp~g~~ 203 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVG--VITRLEGDSGGLAIEKAAEVLVSTVPADVP 203 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcC--cceeccchhhhhhcccCCCEEEECCCCCCC
Confidence 479999999999999999999997 69999999999998876532110 122222223333333459999999998754
Q ss_pred HHHH-HHHHH-----hcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 86 VDQT-IAALS-----EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 86 v~~v-l~~l~-----~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
.+.. +.... ..++++.+++|.--. |..| .+.+..+++|...+
T Consensus 204 ~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~ 251 (282)
T TIGR01809 204 ADYVDLFATVPFLLLKRKSSEGIFLDAAYD-PWPT-PLVAIVSAAGWRVI 251 (282)
T ss_pred CCHHHhhhhhhhhccccCCCCcEEEEEeeC-CCCC-HHHHHHHHCCCEEE
Confidence 3321 11111 123467889998643 3333 34455566665444
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00037 Score=65.67 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=67.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+++.|+|. |.+|..++..|++.|++|.+++|+.++.+.+.+.........+.. ..+.+++.+.+.++|+||.+.|.+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 57999995 999999999999999999999999998887765321000001222 234444444444599999999987
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.. ..........++.+++|..-..
T Consensus 109 ~~---~~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 109 VE---LLEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred ce---echhhhcccCceeEEEEccCCC
Confidence 53 1111222344578999986544
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00038 Score=68.71 Aligned_cols=100 Identities=12% Similarity=0.144 Sum_probs=65.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
++||+|||+ |.||+.++..+.+. ++++. ++|+++++.... .. .++..+.+++++++. +|+|+.+.|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-~~------~~i~~~~dl~~ll~~---~DvVid~t~p 70 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-GA------LGVAITDDLEAVLAD---ADVLIDFTTP 70 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-CC------CCccccCCHHHhccC---CCEEEECCCH
Confidence 369999998 99999999988864 67755 689988765443 11 134566788888765 9999988876
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCC-hhhHHHHHH
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIH 119 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~-~~~t~~~~~ 119 (503)
. ...+++... +..|.-++..+|.. .....++.+
T Consensus 71 ~-~~~~~~~~a---l~~G~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 71 E-ATLENLEFA---LEHGKPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred H-HHHHHHHHH---HHcCCCEEEECCCCCHHHHHHHHH
Confidence 4 344444443 34565555555553 333333443
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00034 Score=71.07 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=83.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
..++|||+|.++....+.+..- .-+|.+|+|+++..+++.......+...+..+.|.+++++. +|+|+.|+|+..
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~---aDiIvt~T~s~~ 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG---ADIVVTATPSTE 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc---CCEEEEecCCCC
Confidence 4699999999999998888753 34799999999999988865333221136788999999998 999999999875
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
.++. ..++++|..|.-.++-.|...+--.+.+...+.-|+|.+
T Consensus 208 ---Pil~--~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 208 ---PVLK--AEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL 250 (330)
T ss_pred ---Ceec--HhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence 2331 235779998888887654433322333333335566653
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00063 Score=68.94 Aligned_cols=99 Identities=11% Similarity=0.116 Sum_probs=64.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhcccC---CCCee-eeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHREG---QLPLT-GHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g---~~~i~-~~~s~~e~~~~l~~~dvIil~v 80 (503)
+||+|||+|.+|.++|..|+..| ++|.++|+++++++.+...-...- ..... ...+.++ +.+ +|+||+++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l~~---aDIVIita 76 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD-CKD---ADIVVITA 76 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH-hCC---CCEEEEcc
Confidence 37999999999999999999999 589999999988766554311000 00112 2234444 344 99999998
Q ss_pred CCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
..+. .++++...+.++- +..+||..||-.
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP~ 120 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNPV 120 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecChH
Confidence 6421 1344445666654 456777777643
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00018 Score=72.05 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=76.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
++|.|||+|.+|++++..|+..|. +|+++||+.++.+.+.+.-... ....+....+..+.+. .+|+||.++|.+-
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~---~aDiVInaTp~Gm 204 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALA---AADGLVHATPTGM 204 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhC---CCCEEEECCcCCC
Confidence 479999999999999999999997 7999999999998887642110 0001222233333334 4999999998762
Q ss_pred hHH-H-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 85 PVD-Q-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 85 ~v~-~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
.-. . .+. ...++++.+++|..-.. ..| .+.+..+++|...++
T Consensus 205 ~~~~~~~~~--~~~l~~~~~v~DivY~P-~~T-~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 205 AKHPGLPLP--AELLRPGLWVADIVYFP-LET-ELLRAARALGCRTLD 248 (284)
T ss_pred CCCCCCCCC--HHHcCCCcEEEEeeeCC-CCC-HHHHHHHHCCCeEec
Confidence 100 0 011 12367788999987644 334 455556677765443
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00076 Score=70.56 Aligned_cols=123 Identities=19% Similarity=0.194 Sum_probs=77.4
Q ss_pred EEEEcccHHHHHHHHHHHhCC-C-cEEEEeCChhHHHHHHHhhcccCCCCeee----eCCHHHHHhccCCCcEEEEecCC
Q 010702 9 IGLAGLAVMGQNLALNVAEKG-F-PISVYNRTTSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 9 IgIIGlG~mG~~lA~~L~~~G-~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~----~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|.|+|.|.+|+.++..|++.+ + +|++.||+.++.+++.+..... ++.. ..+.+++.+-++++|+||.|+|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGD---RVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTT---TEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcccc---ceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999999999999999987 4 8999999999998887531000 1111 23444444444559999999987
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe-cccCCCChhh
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEEG 139 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~~ 139 (503)
. .-..+++..+ ..|.-+||.+. ......++.+..+++|+.++ +++...|...
T Consensus 78 ~-~~~~v~~~~i---~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~ 130 (386)
T PF03435_consen 78 F-FGEPVARACI---EAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPGLSN 130 (386)
T ss_dssp G-GHHHHHHHHH---HHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHH
T ss_pred c-hhHHHHHHHH---HhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccchHH
Confidence 5 4455554443 35788999332 23444555566666777655 4677766543
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00075 Score=74.14 Aligned_cols=116 Identities=18% Similarity=0.311 Sum_probs=77.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~~~ 84 (503)
.+|-|+|+|.+|+.+|+.|.++|++|.+.|.|+++++++.+.+.. -+....+-+++.+ .++++|.++++++++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~----~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~ 493 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIR----AVLGNAANEEIMQLAHLDCARWLLLTIPNGY 493 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCe----EEEcCCCCHHHHHhcCccccCEEEEEcCChH
Confidence 468999999999999999999999999999999999988865432 1333334444443 3557999999999875
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
....++..+....+.-.+|.-.. .+ +..+.+++.|++++=.|
T Consensus 494 ~~~~iv~~~~~~~~~~~iiar~~--~~----~~~~~l~~~Gad~vv~p 535 (558)
T PRK10669 494 EAGEIVASAREKRPDIEIIARAH--YD----DEVAYITERGANQVVMG 535 (558)
T ss_pred HHHHHHHHHHHHCCCCeEEEEEC--CH----HHHHHHHHcCCCEEECh
Confidence 54445554444433334444332 22 23334455677766544
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0016 Score=67.08 Aligned_cols=131 Identities=14% Similarity=0.185 Sum_probs=73.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC----------CCcE-EEEeCC----------hhHHHHHHHhhcccCCC-CeeeeCCH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK----------GFPI-SVYNRT----------TSKVDETLDRAHREGQL-PLTGHYTP 63 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~----------G~~V-~v~dr~----------~~~~~~l~~~~~~~g~~-~i~~~~s~ 63 (503)
..+|+|+|+|.||+.++..|.++ +.+| .++|++ .+....+.+.......+ ......++
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 36899999999999999998865 3454 466853 33333333321100000 00123478
Q ss_pred HHHHhccCCCcEEEEecCCChhH-HHHHHHHHhcCCCCCEEEecCCCCh-hhHHHHHHHHHhcCccEe-cccCCCCh
Q 010702 64 RDFVLSIQRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWY-LNTERRIHEASQKGLLYL-GMGVSGGE 137 (503)
Q Consensus 64 ~e~~~~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iIId~st~~~-~~t~~~~~~l~~~gi~~i-~~pvsgg~ 137 (503)
+++++. ..+|+|+.|+|+.... +...+-+...+..|..||..+.... ....++.+..++.|..|. .+.+.+|-
T Consensus 82 ~ell~~-~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~gl 157 (341)
T PRK06270 82 LEVIRS-VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGAM 157 (341)
T ss_pred HHHhhc-cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeech
Confidence 888764 2489999999974331 1122333445667887876543221 123445555566677654 45555443
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00077 Score=69.13 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=77.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC-
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA- 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~- 82 (503)
.||||||+ .||...+..+.+. ++++ .++|+++++.+++.++. ++..+++.++++++ .|++++++|+
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~------gi~~y~~~eell~d---~Di~~V~ipt~ 73 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL------GVPLYCEVEELPDD---IDIACVVVRSA 73 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh------CCCccCCHHHHhcC---CCEEEEEeCCC
Confidence 58999999 6899999999875 4665 47899999999888754 34568899999876 7888888754
Q ss_pred ---ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 83 ---GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 83 ---~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
+...+-+. ..+..|.-|+----....+.+++.+..+++|+.+.
T Consensus 74 ~P~~~H~e~a~----~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 74 IVGGQGSALAR----ALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CCCccHHHHHH----HHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 23333222 23456666655444445677777777778777655
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00048 Score=72.17 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=68.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
.+|+|+|+|.+|..+|+.+...|.+|.++|+++.+.+.....| +.. .+.++++.. +|+||.++...
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G-------~~~-~~~~e~v~~---aDVVI~atG~~--- 268 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG-------YEV-MTMEEAVKE---GDIFVTTTGNK--- 268 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC-------CEE-ccHHHHHcC---CCEEEECCCCH---
Confidence 4799999999999999999999999999999999877666544 222 245666655 99999987543
Q ss_pred HHHHH-HHHhcCCCCCEEEecCCC
Q 010702 87 DQTIA-ALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 87 ~~vl~-~l~~~l~~g~iIId~st~ 109 (503)
.++. .....+++|.++++.+..
T Consensus 269 -~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 269 -DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred -HHHHHHHHhcCCCCcEEEEeCCC
Confidence 3443 456778899999998854
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00043 Score=70.75 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=71.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK-GF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~-G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|||||+|.+|...+..|... +. .|.+|||++++.+++.+.....-+..+..+++.+++++ +|+|++|+|...
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~----aDiVv~aTps~~ 205 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD----CDILVTTTPSRK 205 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh----CCEEEEecCCCC
Confidence 4799999999999999998843 33 68899999999988876532110012556788888874 899999999864
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
+ +++ ...+++|..|...++..|.
T Consensus 206 P---~~~--~~~l~~g~hV~~iGs~~p~ 228 (326)
T PRK06046 206 P---VVK--AEWIKEGTHINAIGADAPG 228 (326)
T ss_pred c---Eec--HHHcCCCCEEEecCCCCCc
Confidence 3 231 1346789998888876653
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00095 Score=66.23 Aligned_cols=115 Identities=14% Similarity=0.187 Sum_probs=67.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHh-CCCcEE-EEeCC-hhHHH-HHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAE-KGFPIS-VYNRT-TSKVD-ETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~-~G~~V~-v~dr~-~~~~~-~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
+||+|+| +|.||+.+++.+.+ .++++. ++||. ++... .+.+..... ..++..+++++++.. .+|+||.+.|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l~~---~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAVET---DPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHhcC---CCCEEEECCC
Confidence 6999999 69999999999986 477755 67854 32211 111110000 013556788888733 3899999997
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCC-hhhHHHHHHHHHhcCccEe
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~-~~~t~~~~~~l~~~gi~~i 129 (503)
+. ...+.+... +..|.-++..++.. +...+++.+..++.|+.++
T Consensus 78 p~-~~~~~~~~a---l~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~ 122 (266)
T TIGR00036 78 PE-GVLNHLKFA---LEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAV 122 (266)
T ss_pred hH-HHHHHHHHH---HHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEE
Confidence 74 444444443 44565555555543 3334444444455455443
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0014 Score=72.85 Aligned_cols=116 Identities=15% Similarity=0.176 Sum_probs=79.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~~~ 84 (503)
.+|-|+|.|.+|+.+++.|.++|+++++.|.|+++++.+.+.+.. -+....+-.++.+ .++++|.+++++++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~----v~~GDat~~~~L~~agi~~A~~vvv~~~d~~ 476 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMK----VFYGDATRMDLLESAGAAKAEVLINAIDDPQ 476 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCe----EEEEeCCCHHHHHhcCCCcCCEEEEEeCCHH
Confidence 579999999999999999999999999999999999988776532 1334444455553 4667999999998875
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
....++..+....+.-.+++-..+ .+....+.+.|+.++...
T Consensus 477 ~n~~i~~~ar~~~p~~~iiaRa~d------~~~~~~L~~~Gad~v~~e 518 (621)
T PRK03562 477 TSLQLVELVKEHFPHLQIIARARD------VDHYIRLRQAGVEKPERE 518 (621)
T ss_pred HHHHHHHHHHHhCCCCeEEEEECC------HHHHHHHHHCCCCEEehh
Confidence 555555444443333344443322 133445666787776543
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00031 Score=71.37 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=65.2
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+++|||+|..+...+..++. .+ -+|.+|+|++++.++|.+..... ...+..++++++++++ +|+|+.|+|...
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~v~~~~~~~~av~~---aDii~taT~s~~ 204 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDL-GVPVVAVDSAEEAVRG---ADIIVTATPSTT 204 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCC-CTCEEEESSHHHHHTT---SSEEEE----SS
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccc-cccceeccchhhhccc---CCEEEEccCCCC
Confidence 479999999999998888765 33 37999999999999988765432 2357889999999988 999999998875
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
.. .+++ ...+++|..|+..++..|.
T Consensus 205 ~~-P~~~--~~~l~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 205 PA-PVFD--AEWLKPGTHINAIGSYTPG 229 (313)
T ss_dssp EE-ESB---GGGS-TT-EEEE-S-SSTT
T ss_pred CC-cccc--HHHcCCCcEEEEecCCCCc
Confidence 10 1222 2367899999988876654
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0004 Score=60.28 Aligned_cols=95 Identities=17% Similarity=0.245 Sum_probs=60.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCC-c-EEEEeCChhHHHHHHHhhcc-cCCCCeeeeC-CHHHHHhccCCCcEEEEecCC
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGF-P-ISVYNRTTSKVDETLDRAHR-EGQLPLTGHY-TPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~-~-V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~-s~~e~~~~l~~~dvIil~vp~ 82 (503)
||+||| .|.+|..|.+.|.++-+ + +.++.++.+.-..+...... .+...+...+ +.+++ .+ +|+||+|+|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-SD---VDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-TT---ESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-hc---CCEEEecCch
Confidence 699999 99999999999998643 4 55677776332223222110 0000122333 34444 44 9999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+ ...+....+ +.+|..|||.|+..
T Consensus 77 ~-~~~~~~~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 G-ASKELAPKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp H-HHHHHHHHH---HHTTSEEEESSSTT
T ss_pred h-HHHHHHHHH---hhCCcEEEeCCHHH
Confidence 5 556666665 45788999999875
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0009 Score=59.80 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=61.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhc---ccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAH---REGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~---~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|||+|||+ |.+|..+|..|...+. ++.++|+++++++....... ..-..+........+.+++ +|+|+++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~---aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKD---ADIVVITA 77 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTT---ESEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccccccc---ccEEEEec
Confidence 58999999 9999999999999875 79999999876554432110 0000012222233333333 99999987
Q ss_pred CCC----h-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 81 KAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 81 p~~----~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
-.. . .++++...+.++- +..+++-.||-
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNP 120 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNP 120 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSS
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCc
Confidence 321 1 1334445666655 55677777664
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0017 Score=62.63 Aligned_cols=190 Identities=17% Similarity=0.206 Sum_probs=112.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHH-HHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDE-TLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~-l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|+||+||.|.|...+++.+.+.|. ++..+-.+...... +... ++..+.+..+.++. +|+++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~-------g~~~~~~n~~~~~~---s~v~~~svK 70 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEAL-------GVKTVFTNLEVLQA---SDVVFLSVK 70 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcC-------CceeeechHHHHhh---ccceeEeec
Confidence 589999999999999999999985 46666553222222 2322 23444444777776 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCC---CHHHHHHH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGG---SFEAYNNI 158 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg---~~~a~~~v 158 (503)
+ ..+..++.++.+.+..+++|+.+--+....+ +...+. ...+.+-. +.-.+.....|.+++.-| ..+..+.+
T Consensus 71 p-~~i~~vls~~~~~~~~~~iivS~aaG~tl~~--l~~~l~-~~~rviRv-mpNtp~~v~eg~sv~~~g~~~~~~D~~l~ 145 (267)
T KOG3124|consen 71 P-QVIESVLSEIKPKVSKGKIIVSVAAGKTLSS--LESKLS-PPTRVIRV-MPNTPSVVGEGASVYAIGCHATNEDLELV 145 (267)
T ss_pred c-hhHHHHhhcCccccccceEEEEEeecccHHH--HHHhcC-CCCceEEe-cCCChhhhhcCcEEEeeCCCcchhhHHHH
Confidence 8 4789999888887888999998876654333 233333 11222221 111223344555433322 45566888
Q ss_pred HHHHHHHhcccC-CCCcEE-EeCCcchhHHHHhHHHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHH
Q 010702 159 RDILQKVAAQVD-DGPCVT-YIGEGGSGNFVKMVHNGIEYGDMQLISEAYDV-LKHVGGLSNAELAEI 223 (503)
Q Consensus 159 ~~ll~~ig~~~~-~~~~v~-~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l-~~~~g~~~~~~i~~~ 223 (503)
++++..+|-..+ .++++- +.|=.|+|-. ..-.+.|++.= .-+.| ++.+...+.
T Consensus 146 ~~ll~~vG~~~evpE~~iDavTgLsGSgPA-----------y~f~~ieaLadGgVkmG-lPr~lA~~l 201 (267)
T KOG3124|consen 146 EELLSAVGLCEEVPEKCIDAVTGLSGSGPA-----------YVFVAIEALADGGVKMG-LPRQLAYRL 201 (267)
T ss_pred HHHHHhcCcceeCcHHhhhHHhhccCCcHH-----------HHHHHHHHHhccccccC-CCHHHHHHH
Confidence 999999983221 112221 2233455543 11223344322 33566 887766665
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0014 Score=72.57 Aligned_cols=113 Identities=14% Similarity=0.210 Sum_probs=78.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~~~ 84 (503)
++|-|+|.|.+|+.+++.|.++|+++++.|.|+++++.+.+.+.. -+.+..+-.++.+ .++++|.++++++++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~----v~~GDat~~~~L~~agi~~A~~vv~~~~d~~ 476 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYK----VYYGDATQLELLRAAGAEKAEAIVITCNEPE 476 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCe----EEEeeCCCHHHHHhcCCccCCEEEEEeCCHH
Confidence 579999999999999999999999999999999999988775432 1334444455553 3567999999999976
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
....++..+....+.-.+++-..+ +...+.+.+.|+..+
T Consensus 477 ~n~~i~~~~r~~~p~~~IiaRa~~------~~~~~~L~~~Ga~~v 515 (601)
T PRK03659 477 DTMKIVELCQQHFPHLHILARARG------RVEAHELLQAGVTQF 515 (601)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCC------HHHHHHHHhCCCCEE
Confidence 555555555554433355543332 133445566676655
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0017 Score=65.29 Aligned_cols=123 Identities=14% Similarity=0.176 Sum_probs=88.7
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHh---CCCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEE
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAE---KGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~---~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvI 76 (503)
|++++.-|+||+|+|.|++-+++.|.- .+|.| .+++|+.+++.++++...-. +.+.+.|.++++++ +..|+|
T Consensus 1 ~~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~---~~k~y~syEeLakd-~~vDvV 76 (351)
T KOG2741|consen 1 VSDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP---NPKAYGSYEELAKD-PEVDVV 76 (351)
T ss_pred CCCCceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC---CCccccCHHHHhcC-CCcCEE
Confidence 566666789999999999999998863 35664 57899999999998765321 34678999999987 335999
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEecc
Q 010702 77 IILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
.+..|.....+-+...+ ..|+ ++++- -.......+++.+.++.+|+.|++.
T Consensus 77 yi~~~~~qH~evv~l~l----~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 77 YISTPNPQHYEVVMLAL----NKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred EeCCCCccHHHHHHHHH----HcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 99999986655443332 2333 44442 2234567788888889999888765
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00084 Score=68.92 Aligned_cols=99 Identities=12% Similarity=0.091 Sum_probs=72.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+++|||+|..+...++.+..- --+|.+|+|++++.+++.+..... +..+..++++++++++ +|+|+.+++...
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~~~av~~---ADIIvtaT~S~~ 205 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP-GLRIVACRSVAEAVEG---ADIITTVTADKT 205 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc-CCcEEEeCCHHHHHhc---CCEEEEecCCCC
Confidence 4699999999998887766642 247999999999998887654321 1246778999999998 999999997642
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
-..+++. ..+++|..|.-.++-.|.
T Consensus 206 -~~Pvl~~--~~lkpG~hV~aIGs~~p~ 230 (346)
T PRK07589 206 -NATILTD--DMVEPGMHINAVGGDCPG 230 (346)
T ss_pred -CCceecH--HHcCCCcEEEecCCCCCC
Confidence 1122321 356889988877766553
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00097 Score=58.70 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=73.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|.+||+| -|..+|..|++.|++|++.|.++..++.+.+.+... ..-..++..-++-++ +|+|..+=|+. .+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~--v~dDlf~p~~~~y~~---a~liysirpp~-el 90 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNA--FVDDLFNPNLEIYKN---AKLIYSIRPPR-DL 90 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeE--EECcCCCCCHHHHhc---CCEEEEeCCCH-HH
Confidence 579999999 999999999999999999999999988777654210 000112233355565 89999888875 67
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
..-+-++...+...-+|...|+..|.
T Consensus 91 ~~~~~~la~~~~~~~~i~~l~~e~~~ 116 (134)
T PRK04148 91 QPFILELAKKINVPLIIKPLSGEEPI 116 (134)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCC
Confidence 77777788878777788888877643
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00066 Score=67.20 Aligned_cols=102 Identities=19% Similarity=0.214 Sum_probs=67.6
Q ss_pred EEEEcc-cHHHHHHHHHHHhCC----CcEEEEeCChhHHHHHHHhhc---ccC-CCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 9 IGLAGL-AVMGQNLALNVAEKG----FPISVYNRTTSKVDETLDRAH---REG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 9 IgIIGl-G~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~~~---~~g-~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|+|||+ |.||..+|..|+..| .+|.+||+++++++....... ... ..+++.++++.+.+++ +|+||++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~---aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD---ADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC---CCEEEEC
Confidence 689999 999999999999999 789999999876554432210 000 0145666676666666 9999996
Q ss_pred cCCC---------------hhHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
.-.+ ..++++.+.+.... +..++|..||-....+
T Consensus 78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~~t 126 (263)
T cd00650 78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVDIIT 126 (263)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHH
Confidence 5221 12444455666655 6677877776543333
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0019 Score=65.69 Aligned_cols=101 Identities=12% Similarity=0.094 Sum_probs=62.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccC-C-CCeee-eCCHHHHHhccCCCcEEEEe
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREG-Q-LPLTG-HYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g-~-~~i~~-~~s~~e~~~~l~~~dvIil~ 79 (503)
..+||+|||+|.+|.++|..|+..|. ++.++|++.++++.....-.... . .++.. ..+.++ +++ +|+||++
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~-~~~---adivIit 80 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD-CKD---ADLVVIT 80 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH-hCC---CCEEEEe
Confidence 34689999999999999999999997 79999998876544432211000 0 01222 234444 344 9999997
Q ss_pred cCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.-.+. .++++++.+..+- +..+++..||-.
T Consensus 81 ag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP~ 125 (315)
T PRK00066 81 AGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNPV 125 (315)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCcH
Confidence 63211 1333444555544 456677777643
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00055 Score=62.99 Aligned_cols=74 Identities=19% Similarity=0.333 Sum_probs=56.5
Q ss_pred CcEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVM-GQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||.|.| |..+|..|.+.|.+|++.+|+.+ ++.+.+.+ +|+||.+++.+.
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~---------------------~l~~~l~~---aDiVIsat~~~~- 99 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK---------------------NLKEHTKQ---ADIVIVAVGKPG- 99 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch---------------------hHHHHHhh---CCEEEEcCCCCc-
Confidence 58999999997 88899999999999999998742 22334444 999999998863
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++.. ..++++.+|||.+...
T Consensus 100 ---ii~~--~~~~~~~viIDla~pr 119 (168)
T cd01080 100 ---LVKG--DMVKPGAVVIDVGINR 119 (168)
T ss_pred ---eecH--HHccCCeEEEEccCCC
Confidence 2311 1356789999998754
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0023 Score=65.96 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
.||||||+|.||.. .+..+... +.++. ++|+++++.. +... ....++++++++++ ++.|+|++|+|+.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~ell~~-~~vD~V~I~tp~~ 75 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK---ADWP-----TVTVVSEPQHLFND-PNIDLIVIPTPND 75 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH---hhCC-----CCceeCCHHHHhcC-CCCCEEEEcCCcH
Confidence 58999999999984 56666553 67765 7899987643 1110 23567899999874 3479999999997
Q ss_pred hhHHHHHHHHHhcCCCCCEEE-ec-CCCChhhHHHHHHHHHhcCccE
Q 010702 84 SPVDQTIAALSEHMSPGDCII-DG-GNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iII-d~-st~~~~~t~~~~~~l~~~gi~~ 128 (503)
...+.++.. +..|+-|+ +- -.....+.+++.+..++.|+.+
T Consensus 76 ~H~~~~~~a----l~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 76 THFPLAKAA----LEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred HHHHHHHHH----HHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 665544443 34455554 31 1123345666666666666544
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00059 Score=70.26 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=60.3
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 5 ALSRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 5 ~~~~IgIIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
||+||+|||+ |.+|..+++.|.++ ++++. +.++. +..+.+.+..............+.++. ..+++|+|++|+|
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~vD~Vf~alP 77 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPE--ILAGADVVFLALP 77 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHH--HhcCCCEEEECCC
Confidence 4579999996 99999999999987 56765 45543 222222221110000000012333332 1234999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
++ ...+++..+. ..|..|||.|+..--
T Consensus 78 ~~-~~~~~v~~a~---~aG~~VID~S~~fR~ 104 (343)
T PRK00436 78 HG-VSMDLAPQLL---EAGVKVIDLSADFRL 104 (343)
T ss_pred cH-HHHHHHHHHH---hCCCEEEECCcccCC
Confidence 96 4454554443 368999999987643
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00032 Score=60.56 Aligned_cols=104 Identities=13% Similarity=0.196 Sum_probs=71.8
Q ss_pred cEEEEc----ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 8 RIGLAG----LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 8 ~IgIIG----lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+|+||| -+..|.-+..+|.++|++|+..|.....+ . +...+.+++|.-.. .|++++++|.
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i---------~---G~~~y~sl~e~p~~---iDlavv~~~~- 65 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI---------L---GIKCYPSLAEIPEP---IDLAVVCVPP- 65 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE---------T---TEE-BSSGGGCSST----SEEEE-S-H-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE---------C---cEEeeccccCCCCC---CCEEEEEcCH-
Confidence 699999 68999999999999999999887665321 1 36778888883233 8999999998
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
..+.++++++... ..+.+++..+ ...+++.+.+++.|+.+++..
T Consensus 66 ~~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 66 DKVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp HHHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEEESS
T ss_pred HHHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEEeCC
Confidence 4788888888764 4566777666 345567777788899888643
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00087 Score=66.81 Aligned_cols=105 Identities=12% Similarity=0.176 Sum_probs=83.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
+++||+|+|.+|+.+|.++..-|.+|..||.-... +...+. +++ ..+++|+... +|+|-+-+|-..+.
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~-~~~~a~-------gvq-~vsl~Eil~~---ADFitlH~PLtP~T 214 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPM-ALAEAF-------GVQ-LVSLEEILPK---ADFITLHVPLTPST 214 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCch-HHHHhc-------cce-eeeHHHHHhh---cCEEEEccCCCcch
Confidence 46999999999999999999999999999754321 122222 233 4588888887 99999999988888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ 123 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~ 123 (503)
+.++ ++.+..+++|..||+++.+..-+...+.+.+..
T Consensus 215 ~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 215 EKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred hhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 8888 566677899999999999988888888777664
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0019 Score=68.85 Aligned_cols=98 Identities=14% Similarity=0.234 Sum_probs=64.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHhc-cCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLS-IQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~~~~-l~~~dvIil~vp~~~ 84 (503)
|+|.|+|+|.+|..++..|.+.|++|.++|+++++++.+.+..... -+... .+...+.+. ++.+|.||++++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~---~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~- 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVR---TVVGNGSSPDVLREAGAEDADLLIAVTDSD- 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEE---EEEeCCCCHHHHHHcCCCcCCEEEEecCCh-
Confidence 5899999999999999999999999999999999988876521110 01111 223333222 45699999999885
Q ss_pred hHHHHHHHHHhcC-CCCCEEEecCC
Q 010702 85 PVDQTIAALSEHM-SPGDCIIDGGN 108 (503)
Q Consensus 85 ~v~~vl~~l~~~l-~~g~iIId~st 108 (503)
.....+......+ +...+|+...+
T Consensus 77 ~~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 77 ETNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3444443333333 44456665443
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00047 Score=72.59 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=55.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||+|.||..++..|+..|. +++++||++++.+.+.+..... .+...+++.+.+. .+|+||.|++.+..
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~---~~~~~~~l~~~l~---~aDiVI~aT~a~~~ 255 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNA---SAHYLSELPQLIK---KADIIIAAVNVLEY 255 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCC---eEecHHHHHHHhc---cCCEEEECcCCCCe
Confidence 579999999999999999999996 6999999999998887753100 1222333344444 49999999987644
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0099 Score=57.09 Aligned_cols=176 Identities=11% Similarity=0.147 Sum_probs=101.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCCh----------hHHHHHHHhhcccCCCCeee--eCCHHHHHhccCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTT----------SKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQR 72 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~-V~v~dr~~----------~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~ 72 (503)
.++|+|.|+|++|+.+|+.|.+.|.. |.+.|.+. +.++...+.+... .... ..+.+++.. + +
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~-~-~ 97 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSA---RVKVQDYFPGEAILG-L-D 97 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCcc---ccCcccccCccccee-c-c
Confidence 36899999999999999999999885 56789887 6555444432111 0100 112234433 2 5
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCH
Q 010702 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSF 152 (503)
Q Consensus 73 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~ 152 (503)
||+++.|.+.+....+.... + +=++|+...|.... .+..+.|.++|+.|+.--+.. .|..+.
T Consensus 98 ~DVlipaA~~~~i~~~~a~~----l-~a~~V~e~AN~p~t--~~a~~~L~~~Gi~v~Pd~~~N------aGGvi~----- 159 (217)
T cd05211 98 VDIFAPCALGNVIDLENAKK----L-KAKVVAEGANNPTT--DEALRILHERGIVVAPDIVAN------AGGVIV----- 159 (217)
T ss_pred ccEEeeccccCccChhhHhh----c-CccEEEeCCCCCCC--HHHHHHHHHCCcEEEChHHhc------CCCeEe-----
Confidence 99999998876332333333 3 24678877776533 366778899998776432211 111110
Q ss_pred HHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010702 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIF 224 (503)
Q Consensus 153 ~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~ 224 (503)
..++.. +.. ...++- -.-+.+.+...+...+.+.+..+++.+ +++.+...++
T Consensus 160 s~~E~~----q~~-------~~~~w~--------~~~v~~~l~~~m~~~~~~v~~~a~~~~-~~~r~aA~~~ 211 (217)
T cd05211 160 SYFEWV----QNL-------QRLSWD--------AEEVRSKLEQVMTDIHNGVFAISERDG-VTMRAAANIL 211 (217)
T ss_pred EHHHhc----CCc-------cccCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 111111 100 111221 122344455556677788889999988 8887766554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0011 Score=62.82 Aligned_cols=189 Identities=12% Similarity=0.125 Sum_probs=108.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+.+|+||.|..|.....+....++... +..|+++..+.+.+.. ...+.++....+..+++|..+|+. .
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~----------~a~p~d~~~~ael~~~vfv~vpd~-~ 79 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETY----------VAPPLDVAKSAELLLLVFVDVPDA-L 79 (289)
T ss_pred eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhcc----------CCCccchhhChhhhceEEecchHH-H
Confidence 579999999999997766666666654 4478888877765532 223333333322257788888774 3
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec----ccCCCChhhhh--cCCccc-CCCCHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG----MGVSGGEEGAR--HGPSLM-PGGSFEAYNNI 158 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~----~pvsgg~~~a~--~G~~i~-~gg~~~a~~~v 158 (503)
+-.+...- .-.+|++|++||...-. .+.+.+...|.--.. +-.+|.++... .++.+. ..+|+--+..+
T Consensus 80 ~s~vaa~~--~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~ 154 (289)
T COG5495 80 YSGVAATS--LNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIV 154 (289)
T ss_pred HHHHHHhc--ccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHH
Confidence 33333222 24589999999886533 334444444432211 13455555443 333332 35677778888
Q ss_pred HHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010702 159 RDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (503)
Q Consensus 159 ~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 219 (503)
+.+...+|.+ .+-+-+ +.=-.--...|--..-...++.|+..+.+..| .|..+
T Consensus 155 q~la~emgg~------~f~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag-~Dq~e 207 (289)
T COG5495 155 QSLALEMGGE------PFCVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAG-DDQPE 207 (289)
T ss_pred HHHHHHhCCC------ceeech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhc-CCCcc
Confidence 9999999954 222222 11100011111222224677889999999998 87444
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0032 Score=63.95 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=63.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcc----cCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHR----EGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~----~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
+||+|||+|.+|.++|..|+..|. ++.++|+++++++........ .....+..+.+++++ ++ +|+||++.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-~~---adivvita 79 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-AN---SKVVIVTA 79 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-CC---CCEEEECC
Confidence 589999999999999999998885 699999988765433221100 000024444677763 44 99999975
Q ss_pred CC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
-. +. .++++.+.+..+ .+..++|..||-.
T Consensus 80 G~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~ 123 (312)
T cd05293 80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPV 123 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChH
Confidence 32 11 133344555555 4667777777643
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0014 Score=68.27 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--C-CcEEEEeCChhHHHHHHHhhccc-CCC-CeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--G-FPISVYNRTTSKVDETLDRAHRE-GQL-PLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G-~~V~v~dr~~~~~~~l~~~~~~~-g~~-~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.+++|||+|.++......++.- . -+|.+|||++++.+++.++.... ++. .+..++++++++++ +|+|+.|++
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~---ADIVvtaT~ 232 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG---SDIVTYCNS 232 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC---CCEEEEccC
Confidence 4799999999999999888763 2 37999999999998887654321 001 26778999999988 999999987
Q ss_pred CChh---HHHHHHHHHhcCCCCCEEEecCC
Q 010702 82 AGSP---VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 82 ~~~~---v~~vl~~l~~~l~~g~iIId~st 108 (503)
.... ...+++ ..++++|..|+..+.
T Consensus 233 s~~~~~s~~Pv~~--~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 233 GETGDPSTYPYVK--REWVKPGAFLLMPAA 260 (379)
T ss_pred CCCCCCCcCcEec--HHHcCCCcEEecCCc
Confidence 5320 112332 135678888865443
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0012 Score=65.24 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=74.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhccCCCcEEEEec--CCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILV--KAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~~~~l~~~dvIil~v--p~~ 83 (503)
.||.|||-|.+|..-|+-..-.|-+|++.|+|.+++..+-..... ++ ...+++..+.+.++++|+||-+| |..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----RVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----eeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 479999999999999999999999999999999988777654321 22 34567777767777799999876 433
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGG 107 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~s 107 (503)
++=+-+.+++...+.||.+|||..
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEE
Confidence 333344578888899999999863
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0031 Score=63.72 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=62.7
Q ss_pred EEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhccc----CCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 9 IGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHRE----GQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 9 IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~----g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|+|||+|.+|.++|..|+..| .++.++|+++++++.....-... ...++....+.+ .+++ +|+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~-~l~~---aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYA-DAAD---ADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHH-HhCC---CCEEEEcCCC
Confidence 689999999999999999998 57999999988766554321110 000233334444 3333 9999999854
Q ss_pred Ch---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 83 GS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 83 ~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. .++++...+.++. +..+||..||-.
T Consensus 77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~ 118 (300)
T cd00300 77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPV 118 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChH
Confidence 21 1334445555555 666777777643
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0027 Score=60.20 Aligned_cols=33 Identities=24% Similarity=0.507 Sum_probs=30.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT 38 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~ 38 (503)
..+|+|||+|.||+.+|.+|++.|+ +++++|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3589999999999999999999999 69999999
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00073 Score=62.24 Aligned_cols=98 Identities=16% Similarity=0.151 Sum_probs=64.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--------------------eCCHHHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--------------------HYTPRDF 66 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--------------------~~s~~e~ 66 (503)
.+|.|+|.|+.|.+-+..|...|++|+++|.++++.+++....... +.. ......+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYF----IEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEE----SEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCce----EEEcccccccccccchhhhhHHHHHhHHHH
Confidence 5799999999999999999999999999999998887766543321 111 1111122
Q ss_pred HhccCCCcEEEEecC-CChhHHHHH-HHHHhcCCCCCEEEecCC
Q 010702 67 VLSIQRPRSVIILVK-AGSPVDQTI-AALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 67 ~~~l~~~dvIil~vp-~~~~v~~vl-~~l~~~l~~g~iIId~st 108 (503)
.+.++.+|+||.++- .+.....++ ++.+..+.++.+|+|.|-
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence 233334899997542 222333333 666677889999999875
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0017 Score=59.62 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=52.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
|||+|||+ |..|+.|+.-..+.||+|+.+-||++++..+....... -. .-+++.+.+.|..-|+||.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q----~D-ifd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQ----KD-IFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeec----cc-ccChhhhHhhhcCCceEEEeccCC
Confidence 68999996 99999999999999999999999999876542111000 01 124555555566689999998544
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.01 Score=51.47 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=74.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHH--HHhcCCCCCCCcch
Q 010702 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKK--AYQRNPNLASLVVD 403 (503)
Q Consensus 326 ~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~--~~~~~~~~~~ll~~ 403 (503)
|+++-.|.++|-+.++.++.++|++.+-++. ++|.+++.++-+.| --.|+.++.... ++.++.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~------Gld~~~~~~vl~~~-~~~s~~~~~~~~~~~~~~~~~------- 66 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKA------GLDPEQLLDVLSAG-SGGSWMLKNRAPRMILNGDFD------- 66 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TS-HHHHHHHHHTS-TTHBHHHHHHHHHHHHTTTTC-------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHccC-CcCchHHHhhhhhhhhcccCC-------
Confidence 4577899999999999999999999998853 39999999999877 457888776544 3333222
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010702 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (503)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~ 443 (503)
+.|. ++-...+++-++..|-+.|+|+|..+.+.++|..
T Consensus 67 ~~f~--l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~ 104 (122)
T PF14833_consen 67 PGFS--LDLARKDLRLALDLAKEAGVPLPLGSAARQLYQA 104 (122)
T ss_dssp SSSB--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred ccch--hHhhccHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 1221 2234456788999999999999999999987753
|
... |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0016 Score=67.04 Aligned_cols=97 Identities=13% Similarity=0.181 Sum_probs=60.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcc-cCCCCeee-eCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHR-EGQLPLTG-HYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~-~g~~~i~~-~~s~~e~~~~l~~~dvIil~vp 81 (503)
+||+|||+ |.+|..+++.|.++ ++++. +++++...-+.+.+.... .+...... ..+.+++.++ +|+||+|+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAED---ADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcC---CCEEEECCC
Confidence 48999998 99999999999987 56777 556554222222211110 00000111 1245555544 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++ ...+.+..+. ..|..|||.|+..
T Consensus 78 ~~-~s~~~~~~~~---~~G~~VIDlS~~f 102 (346)
T TIGR01850 78 HG-VSAELAPELL---AAGVKVIDLSADF 102 (346)
T ss_pred ch-HHHHHHHHHH---hCCCEEEeCChhh
Confidence 96 4455555554 3689999999865
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0034 Score=60.72 Aligned_cols=115 Identities=12% Similarity=0.098 Sum_probs=76.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChhHHHHHHHhhcccCCC-CeeeeCCHHHHHhccCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPIS-VYNR----------TTSKVDETLDRAHREGQL-PLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~~~~~g~~-~i~~~~s~~e~~~~l~~~ 73 (503)
.++|+|.|.|.+|+.+|+.|.+.|.+|+ +.|. +.+.+.+..+.......+ ... .-+.+++... +|
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~-~~~~~~i~~~--~~ 107 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAE-RITNEELLEL--DC 107 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCce-ecCCccceee--cc
Confidence 4689999999999999999999999988 6677 666655554432110000 001 1133444332 48
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
|+++-|.+.+....+.+..+. =.+|+...|... +.+..+.|.++|+.|+.
T Consensus 108 Dvlip~a~~~~i~~~~~~~l~-----a~~I~egAN~~~--t~~a~~~L~~rGi~~~P 157 (227)
T cd01076 108 DILIPAALENQITADNADRIK-----AKIIVEAANGPT--TPEADEILHERGVLVVP 157 (227)
T ss_pred cEEEecCccCccCHHHHhhce-----eeEEEeCCCCCC--CHHHHHHHHHCCCEEEC
Confidence 999999887654444444442 467888888764 36677889999998874
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0028 Score=67.19 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=51.3
Q ss_pred CCcEEEEcccHHHHHHHH--HHH----hCCCcEEEEeCChhHHHHHH---Hhhcc-cC-CCCeeeeCCHHHHHhccCCCc
Q 010702 6 LSRIGLAGLAVMGQNLAL--NVA----EKGFPISVYNRTTSKVDETL---DRAHR-EG-QLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~--~L~----~~G~~V~v~dr~~~~~~~l~---~~~~~-~g-~~~i~~~~s~~e~~~~l~~~d 74 (503)
|+||+|||.|.||.+.+. .++ -.|.+|.++|+++++.+... +.... .+ ..++..+++..+++++ +|
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~d---AD 77 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQG---AD 77 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCC---CC
Confidence 368999999999977665 554 23568999999998765322 11110 00 1246667787777776 99
Q ss_pred EEEEecCCC
Q 010702 75 SVIILVKAG 83 (503)
Q Consensus 75 vIil~vp~~ 83 (503)
+||+++..+
T Consensus 78 fVv~ti~vg 86 (431)
T PRK15076 78 YVINAIQVG 86 (431)
T ss_pred EEeEeeeeC
Confidence 999998654
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0045 Score=61.81 Aligned_cols=93 Identities=10% Similarity=0.068 Sum_probs=63.8
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEE-EEeCChhHHH-HHHHhhcccCCCCe-eeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAE-KGFPIS-VYNRTTSKVD-ETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~-~G~~V~-v~dr~~~~~~-~l~~~~~~~g~~~i-~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
.+|||||+|.||..++..+.+ .++++. ++|+++++.. ++.+.. ++ ..+.+.+++++. ++.|+|++++|+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~------Gi~~~~~~~e~ll~~-~dIDaV~iaTp~ 74 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARAREL------GVKTSAEGVDGLLAN-PDIDIVFDATSA 74 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHC------CCCEEECCHHHHhcC-CCCCEEEECCCc
Confidence 589999999999999888775 356655 6899887633 233221 22 345678888864 347999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
..+.+. .. ..+..|..|+|.+...
T Consensus 75 ~~H~e~-a~---~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 75 KAHARH-AR---LLAELGKIVIDLTPAA 98 (285)
T ss_pred HHHHHH-HH---HHHHcCCEEEECCccc
Confidence 744332 22 2345789999987654
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0028 Score=64.27 Aligned_cols=103 Identities=19% Similarity=0.186 Sum_probs=61.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCc--EEEEeCCh--hHHHHHH----HhhcccC-CCCeeeeCCHHHHHhccCCCcEE
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFP--ISVYNRTT--SKVDETL----DRAHREG-QLPLTGHYTPRDFVLSIQRPRSV 76 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~--V~v~dr~~--~~~~~l~----~~~~~~g-~~~i~~~~s~~e~~~~l~~~dvI 76 (503)
|||+|||+ |.+|..++..|+..|+. |.++||++ ++++... +.....+ ..++....+.++ +.+ +|+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~---aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAG---SDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH-hCC---CCEE
Confidence 58999997 99999999999999874 99999965 3332111 1000000 002333445444 444 9999
Q ss_pred EEecCCC---------------hhHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 77 IILVKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 77 il~vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
|+++..+ ..++++...+.+..+ ..+||..+|..+..+
T Consensus 77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t 128 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMT 128 (309)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHH
Confidence 9998521 113344455666554 445555555444344
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.03 Score=54.54 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=99.3
Q ss_pred CeeeeCCHHHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc---Eeccc
Q 010702 56 PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL---YLGMG 132 (503)
Q Consensus 56 ~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~---~i~~p 132 (503)
++...++-.|+++. +|++|+-+|-+...-.+++.+++++++|.||.+..|.++....+..+.+..+.+. |-.+.
T Consensus 128 GvkVtsDD~EAvk~---aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVAD---ADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcC---CCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 56677777788877 9999999999987788999999999999999999999887766666665544332 22223
Q ss_pred CCCChhhhhcCCcccCC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010702 133 VSGGEEGARHGPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (503)
Q Consensus 133 vsgg~~~a~~G~~i~~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~ 210 (503)
|-|.+ |.++..- .+++..+++.++.+..+ +..+.+-..=.+...-|. ..+.+...+.+.+-+....
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~------k~ay~~PA~lvspV~DMg-S~VTAv~~aGiL~Y~~~~t 272 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKAR------GNAFKMPANLIGPVCDMC-SAVTAIVYAGILAYRDAVT 272 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhC------CCeeecchhhcchhhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 33332 4433322 38889999999999998 666665443333333343 2334445566666666666
Q ss_pred HhCCCCH
Q 010702 211 HVGGLSN 217 (503)
Q Consensus 211 ~~g~~~~ 217 (503)
+..|.+.
T Consensus 273 qIlgAP~ 279 (342)
T PRK00961 273 QILGAPA 279 (342)
T ss_pred HHhcCcH
Confidence 6654443
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0056 Score=61.44 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=64.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHH-HHHHhhcccCCCCeee-eCCHHHHHhc--cCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVD-ETLDRAHREGQLPLTG-HYTPRDFVLS--IQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~-~l~~~~~~~g~~~i~~-~~s~~e~~~~--l~~~dvIil~ 79 (503)
+.||||||+|.+|..+...+.+. +.++. ++|+++++.. ...++. ++.. +.+.+++++. +++.|+|+.+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~------Gi~~~~~~ie~LL~~~~~~dIDiVf~A 77 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRL------GVATSAEGIDGLLAMPEFDDIDIVFDA 77 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHc------CCCcccCCHHHHHhCcCCCCCCEEEEC
Confidence 35899999999999988888764 45654 7899886432 222221 2333 4688888863 3558999999
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+|... -.+....+ +..|..|||.+...
T Consensus 78 T~a~~-H~e~a~~a---~eaGk~VID~sPA~ 104 (302)
T PRK08300 78 TSAGA-HVRHAAKL---REAGIRAIDLTPAA 104 (302)
T ss_pred CCHHH-HHHHHHHH---HHcCCeEEECCccc
Confidence 98853 33333333 45789999988754
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0089 Score=63.75 Aligned_cols=114 Identities=14% Similarity=0.212 Sum_probs=73.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-eee-CCHHHHH-hccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGH-YTPRDFV-LSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~-~s~~e~~-~~l~~~dvIil~vp~ 82 (503)
+++|-|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+.+... .+ ... .+.+.+. ..++++|.|+++.++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~---~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNT---LVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCC---eEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 46799999999999999999999999999999999988887653110 11 111 2333331 245569999988887
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
+ ...-.+..+...+....+|+-..+... ...+...|+.++
T Consensus 308 ~-~~n~~~~~~~~~~~~~~ii~~~~~~~~------~~~~~~~g~~~v 347 (453)
T PRK09496 308 D-EANILSSLLAKRLGAKKVIALVNRPAY------VDLVEGLGIDIA 347 (453)
T ss_pred c-HHHHHHHHHHHHhCCCeEEEEECCcch------HHHHHhcCCCEE
Confidence 5 333333334444555566665554322 233455576655
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.031 Score=54.60 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=98.4
Q ss_pred CeeeeCCHHHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 56 PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 56 ~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
++...++-.|+++. +|++|+-+|-+...-.+++.+++++++|.||.+..|..+....+..+.+..+.+...... -+
T Consensus 126 GvkVtsDD~EAv~~---aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~H-Pa 201 (340)
T TIGR01723 126 GLKVTTDDREAVED---ADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYH-PG 201 (340)
T ss_pred CceEecCcHHHhcC---CCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccC-CC
Confidence 56677777788887 999999999998778899999999999999999999988766666665544433222211 12
Q ss_pred ChhhhhcCC-cccCC-CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhC
Q 010702 136 GEEGARHGP-SLMPG-GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVG 213 (503)
Q Consensus 136 g~~~a~~G~-~i~~g-g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g 213 (503)
+.++.. |. .+.-| .+++..+++.++.+..+ +..+.+...=.+...-|. ..+.+...+.+.+-+....+..
T Consensus 202 aVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~------k~ay~~PA~LvspV~DMg-S~VTAv~~aGiL~Y~~~~t~Il 273 (340)
T TIGR01723 202 CVPEMK-GQVYIAEGYASEEAVNKLYELGKKAR------GKAFKMPANLLGPVCDMC-SAVTAIVYAGLLAYRDAVTKIL 273 (340)
T ss_pred CCCCCC-CceEeecccCCHHHHHHHHHHHHHhC------CCeeecchhhccchhhHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 223333 33 33222 38889999999999998 566655433333333333 2333445566666666666655
Q ss_pred CCCH
Q 010702 214 GLSN 217 (503)
Q Consensus 214 ~~~~ 217 (503)
|.+.
T Consensus 274 gAP~ 277 (340)
T TIGR01723 274 GAPA 277 (340)
T ss_pred cCcH
Confidence 4443
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0031 Score=67.67 Aligned_cols=100 Identities=13% Similarity=0.145 Sum_probs=66.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc--------C--CCCeeeeCCHH-------HHHhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE--------G--QLPLTGHYTPR-------DFVLS 69 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~--------g--~~~i~~~~s~~-------e~~~~ 69 (503)
.++.|+|+|.+|...+..+...|..|.++|+++++.+.+...+... | ..+.....+.+ .+.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~ 244 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ 244 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999877666543211 0 00000000101 02333
Q ss_pred cCCCcEEEEec-----CCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 70 IQRPRSVIILV-----KAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 70 l~~~dvIil~v-----p~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++++|+||.++ |.+ +-+.++....+++|.+|||.+..
T Consensus 245 ~~~~DIVI~TalipG~~aP---~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 245 AKEVDIIITTALIPGKPAP---KLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred hCCCCEEEECcccCCCCCC---eeehHHHHhhCCCCCEEEEeeeC
Confidence 45689998887 332 11235566778889999998763
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0032 Score=66.75 Aligned_cols=119 Identities=19% Similarity=0.275 Sum_probs=72.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--------C--Cc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--------G--FP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS 75 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--------G--~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dv 75 (503)
.+|||||+|.||+.++..|.++ | .+ +.++||++++...+. . . ....++++++++++ .+.|+
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-~---~---~~~~~~d~~~ll~d-~~iDv 75 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-L---P---GILLTTDPEELVND-PDIDI 75 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-C---c---ccceeCCHHHHhhC-CCCCE
Confidence 5899999999999999887654 3 34 447799877643211 0 0 23467889999864 23799
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCCEEEecCCC-ChhhHHHHHHHHHhcCccE-ecccCCCC
Q 010702 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLNTERRIHEASQKGLLY-LGMGVSGG 136 (503)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~-~~~~t~~~~~~l~~~gi~~-i~~pvsgg 136 (503)
|+.+++......+.+ ...|..|.-|+..... ......++.+..+++|+.| +++.+.||
T Consensus 76 Vve~tg~~~~~~~~~---~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~gg 135 (426)
T PRK06349 76 VVELMGGIEPARELI---LKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGG 135 (426)
T ss_pred EEECCCCchHHHHHH---HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeecc
Confidence 999987643333333 3445678777754321 1122334455555667754 34555554
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0048 Score=59.68 Aligned_cols=106 Identities=18% Similarity=0.161 Sum_probs=68.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc---EEEEeCC----hhHH-------HHHHHhhcccCCCCeeeeCCHHHHHhccCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFP---ISVYNRT----TSKV-------DETLDRAHREGQLPLTGHYTPRDFVLSIQR 72 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~---V~v~dr~----~~~~-------~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~ 72 (503)
++|-|+|+|.+|.++|..|.+.|.. |+++||+ .++. .++.+..... ....++.+.+..
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~-----~~~~~l~~~l~~--- 97 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPE-----KTGGTLKEALKG--- 97 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccC-----cccCCHHHHHhc---
Confidence 5899999999999999999999974 9999999 4432 2233221000 111256566655
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 73 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+|+||-++|.+....++++ .+.++.+|++.+|-.+ +...+...+.|..
T Consensus 98 ~dvlIgaT~~G~~~~~~l~----~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~ 145 (226)
T cd05311 98 ADVFIGVSRPGVVKKEMIK----KMAKDPIVFALANPVP---EIWPEEAKEAGAD 145 (226)
T ss_pred CCEEEeCCCCCCCCHHHHH----hhCCCCEEEEeCCCCC---cCCHHHHHHcCCc
Confidence 9999999986543333333 3446788889885443 2344444445554
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0027 Score=64.12 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=61.3
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeee-eCCHHHHHhccCCCcEEEEec
Q 010702 5 ALSRIGLAGL-AVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTG-HYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 5 ~~~~IgIIGl-G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~-~~s~~e~~~~l~~~dvIil~v 80 (503)
+|+||+|||. |.-|..|.+.|+.+.. ++..+..+..+-+.+.+...+. |...... ..+++++ ....||+||+|+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~--~~~~~DvvFlal 78 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI--ELDECDVVFLAL 78 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhh--hcccCCEEEEec
Confidence 4679999995 9999999999998753 6666654442222333322111 0000111 1133333 223489999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
|++ ...+.+..+. .+|..|||+|+.+--
T Consensus 79 Phg-~s~~~v~~l~---~~g~~VIDLSadfR~ 106 (349)
T COG0002 79 PHG-VSAELVPELL---EAGCKVIDLSADFRL 106 (349)
T ss_pred Cch-hHHHHHHHHH---hCCCeEEECCccccc
Confidence 997 4444544443 367779999987543
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0081 Score=61.91 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=71.0
Q ss_pred CcEEEEcccHHHH-HHHHHHHh--CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQ-NLALNVAE--KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~-~lA~~L~~--~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
.||||||+|.++. ..+..+.. .+++|. ++|+++++. ++.+... .+..+++.++++++ .+.|+|++++|+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~-----~~~~~~~~~ell~~-~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYS-----HIHFTSDLDEVLND-PDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcC-----CCcccCCHHHHhcC-CCCCEEEEeCCc
Confidence 5899999999775 34454533 356764 789997654 4443321 24567899999874 347999999999
Q ss_pred ChhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEe
Q 010702 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (503)
....+-++..+ ..|+ ++++- -.....+.+++.+..+++|+.+.
T Consensus 75 ~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 75 DSHFEYAKRAL----EAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVT 119 (344)
T ss_pred hHHHHHHHHHH----HcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 86655554443 3444 45441 11234566777777777776543
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0074 Score=62.06 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=60.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhh-cc-----------cCCCCeeeeCCHHHHHhccC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRA-HR-----------EGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~-~~-----------~g~~~i~~~~s~~e~~~~l~ 71 (503)
|+||||+|+|.||+.+++.+.++ +++|. ++|++++....+.+.. .. .+..++....+++++...
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~-- 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEK-- 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhcc--
Confidence 46899999999999999988864 56655 5677766555544421 00 000024445566666654
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 72 RPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 72 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+|+|+.|.|.. ...+.... ++..|..+|+.+..
T Consensus 79 -vDVVIdaT~~~-~~~e~a~~---~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 -ADIVVDATPGG-VGAKNKEL---YEKAGVKAIFQGGE 111 (341)
T ss_pred -CCEEEECCCch-hhHHHHHH---HHHCCCEEEEcCCC
Confidence 88888888775 33333332 33456777777664
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0043 Score=50.35 Aligned_cols=62 Identities=21% Similarity=0.381 Sum_probs=46.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++++|+|.|.+|..++..|.+. +.+|.+||| |++|.+++.+..
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------di~i~~~~~~~~ 67 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------------------DILVTATPAGVP 67 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------------------CEEEEcCCCCCC
Confidence 5799999999999999999998 567888876 577777766544
Q ss_pred HHHHHHHHHhcCCCCCEEEecC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGG 107 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~s 107 (503)
+.+ +....+.++.+|+|++
T Consensus 68 ~~~---~~~~~~~~~~~v~~~a 86 (86)
T cd05191 68 VLE---EATAKINEGAVVIDLA 86 (86)
T ss_pred chH---HHHHhcCCCCEEEecC
Confidence 332 2233456778888763
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0055 Score=56.56 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=52.2
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEEEecCCC
Q 010702 9 IGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 9 IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
|.|+|. |.+|..+++.|.+.|++|++..|++++.+. ..+. .+.. ..+++.+.+.++.+|.||.+++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~-----~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGV-----EIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTE-----EEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--cccc-----ccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 679995 999999999999999999999999998876 2211 1111 235555666667799999999754
|
... |
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0029 Score=66.14 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHH-HHHHHhCCCcEEEEeCChhHHHHHHHhhcc----cC-C--C----Ceeee--CCHHHHHhccCC
Q 010702 7 SRIGLAGLAVMGQNL-ALNVAEKGFPISVYNRTTSKVDETLDRAHR----EG-Q--L----PLTGH--YTPRDFVLSIQR 72 (503)
Q Consensus 7 ~~IgIIGlG~mG~~l-A~~L~~~G~~V~v~dr~~~~~~~l~~~~~~----~g-~--~----~i~~~--~s~~e~~~~l~~ 72 (503)
|||.++|+|.||+++ ...|.+.|++|++.|++++.++.+.+++.- .+ . . .+... .+.+++.+.+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 589999999999855 888899999999999999999998877531 01 0 0 11112 133455554455
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcC--------CCCCEEEecCCCC
Q 010702 73 PRSVIILVKAGSPVDQTIAALSEHM--------SPGDCIIDGGNEW 110 (503)
Q Consensus 73 ~dvIil~vp~~~~v~~vl~~l~~~l--------~~g~iIId~st~~ 110 (503)
+|+|.++|... ..+.++..|.+.| .++-+|+.|=|..
T Consensus 81 ~dlvt~~v~~~-~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~ 125 (381)
T PRK02318 81 ADLVTTAVGPN-ILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMI 125 (381)
T ss_pred CCEEEeCCCcc-cchhHHHHHHHHHHHHHHcCCCCCCEEEecCChh
Confidence 89999888764 4555655554443 2333777887764
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0029 Score=63.04 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=78.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.+|.|+|+|-++++++..|++.|. +|+++||+.++.+++.+.....+ .........++.. +..+|+||-++|.+-.
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~--~~~~~~~~~~~~~-~~~~dliINaTp~Gm~ 203 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELG--AAVEAAALADLEG-LEEADLLINATPVGMA 203 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ccccccccccccc-ccccCEEEECCCCCCC
Confidence 569999999999999999999995 79999999999999887643221 0001112221111 1138999999997744
Q ss_pred HHH---HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 86 VDQ---TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 86 v~~---vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
-.. .+. ...++++.++.|.--... .| .+.+..+++|...++
T Consensus 204 ~~~~~~~~~--~~~l~~~~~v~D~vY~P~-~T-plL~~A~~~G~~~id 247 (283)
T COG0169 204 GPEGDSPVP--AELLPKGAIVYDVVYNPL-ET-PLLREARAQGAKTID 247 (283)
T ss_pred CCCCCCCCc--HHhcCcCCEEEEeccCCC-CC-HHHHHHHHcCCeEEC
Confidence 321 222 345778999999855432 33 455666777766554
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0039 Score=62.13 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=57.7
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||.|. +|.++|..|...|.+|+++++... ++.+.+.+ +|+||.+++....
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~---------------------~l~~~~~~---ADIVIsAvg~p~~ 214 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK---------------------DMASYLKD---ADVIVSAVGKPGL 214 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------hHHHHHhh---CCEEEECCCCCcc
Confidence 5899999987 999999999999999999986421 34445555 9999999987643
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. . ..+++|.+|||.+...
T Consensus 215 i~---~---~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 215 VT---K---DVVKEGAVIIDVGNTP 233 (286)
T ss_pred cC---H---HHcCCCcEEEEcCCCc
Confidence 22 1 2467899999998753
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.019 Score=61.52 Aligned_cols=114 Identities=9% Similarity=0.030 Sum_probs=67.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-----HHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec-
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-----KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV- 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v- 80 (503)
++|+|+|+|.-|.++|+.|.+.|++|+++|+++. ..+++.+.+. .+.......+.+.. +|+||.+.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi-----~~~~~~~~~~~~~~---~dlVV~Spg 86 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGV-----KLVLGENYLDKLDG---FDVIFKTPS 86 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCC-----EEEeCCCChHHhcc---CCEEEECCC
Confidence 5899999999999999999999999999998753 1233443331 12222222333344 89988873
Q ss_pred -CC-ChhHHHHHH---------HHH-hcCCCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 81 -KA-GSPVDQTIA---------ALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 81 -p~-~~~v~~vl~---------~l~-~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
|. ...+....+ +++ .......|-|..|++...++.-+...+...|...
T Consensus 87 i~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~ 146 (458)
T PRK01710 87 MRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKT 146 (458)
T ss_pred CCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCE
Confidence 11 112222211 111 2222234566667776666655666777666543
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0037 Score=62.18 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=58.3
Q ss_pred CcEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVM-GQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||.|.. |.++|..|.+.|.+|+++... ..++.+.+.+ +|+||.+++...-
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------------------t~~l~~~~~~---ADIVV~avG~~~~ 214 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------------------TRDLAAHTRQ---ADIVVAAVGKRNV 214 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------------------CCCHHHHhhh---CCEEEEcCCCcCc
Confidence 57999999877 999999999999999997532 1355566666 9999999997643
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~ik~gavVIDVGin~ 233 (285)
T PRK14189 215 LTA------DMVKPGATVIDVGMNR 233 (285)
T ss_pred cCH------HHcCCCCEEEEccccc
Confidence 222 5688999999998754
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.016 Score=59.71 Aligned_cols=99 Identities=12% Similarity=0.177 Sum_probs=61.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhc----ccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAH----REGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~----~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
+||+|||+|.+|.++|..|+..|. ++.++|+++++++.....-. ..+...+....+.++ +++ ||+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~d---aDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAG---SDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCC---CCEEEECC
Confidence 589999999999999999998886 69999999876543332110 000002333345555 333 99999985
Q ss_pred CC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
-. +. .++++...+..+ .+..++|..||-.
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPv 157 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPV 157 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCch
Confidence 32 11 122333455554 3566777777643
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.002 Score=53.52 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=59.2
Q ss_pred CcEEEEcccHHHHHHHHHH-HhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNV-AEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L-~~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|.|+|+|.+|..++.++ ...|+. +.++|.++++..+-. . ++....+.+++.+.+ +.|+.+++||..
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-----~---gipV~~~~~~l~~~~-~i~iaii~VP~~- 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-----G---GIPVYGSMDELEEFI-EIDIAIITVPAE- 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-----T---TEEEESSHHHHHHHC-TTSEEEEES-HH-
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-----C---CEEeeccHHHhhhhh-CCCEEEEEcCHH-
Confidence 4799999999999988654 456776 557899998543111 1 467777999998877 599999999984
Q ss_pred hHHHHHHHHHh
Q 010702 85 PVDQTIAALSE 95 (503)
Q Consensus 85 ~v~~vl~~l~~ 95 (503)
.+.+++.++..
T Consensus 74 ~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 AAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67778877766
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.013 Score=61.86 Aligned_cols=124 Identities=18% Similarity=0.075 Sum_probs=76.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHH----HHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe-
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKV----DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL- 79 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~----~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~- 79 (503)
.++||.|+|+|.-|.+.|+.|.+.|++|+++|.++... ..+...+. .+..-....+... .+|+|+..
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i-----~~~~g~~~~~~~~---~~d~vV~SP 77 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGI-----EVELGSHDDEDLA---EFDLVVKSP 77 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCc-----eeecCccchhccc---cCCEEEECC
Confidence 36789999999999999999999999999999776651 11111211 1111111112233 38999886
Q ss_pred -cCCChh-HHHHHH---------HHHhcC--CCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC
Q 010702 80 -VKAGSP-VDQTIA---------ALSEHM--SPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (503)
Q Consensus 80 -vp~~~~-v~~vl~---------~l~~~l--~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg 136 (503)
+|.... ++.... +|.... ...-+-|..||+...+|.-+...++..|....-++=.|.
T Consensus 78 Gi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~ 147 (448)
T COG0771 78 GIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGT 147 (448)
T ss_pred CCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCc
Confidence 333222 333321 222222 233667778888888887788888888876555544444
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0034 Score=65.40 Aligned_cols=97 Identities=18% Similarity=0.148 Sum_probs=60.6
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeC--CHHHHHhccCCCcEEEEec
Q 010702 5 ALSRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHY--TPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 5 ~~~~IgIIGl-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~--s~~e~~~~l~~~dvIil~v 80 (503)
+++||+|+|+ |..|..|.+.|.++ +++|..+.++...-+.+................ +.+++ + ++|+||+++
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~-~---~~DvVf~Al 112 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADF-S---DVDAVFCCL 112 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHh-c---CCCEEEEcC
Confidence 4568999996 99999999999998 678888876544322222111000000011111 22222 3 399999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
|++ ...+++.. +..|..|||.|+..
T Consensus 113 p~~-~s~~i~~~----~~~g~~VIDlSs~f 137 (381)
T PLN02968 113 PHG-TTQEIIKA----LPKDLKIVDLSADF 137 (381)
T ss_pred CHH-HHHHHHHH----HhCCCEEEEcCchh
Confidence 985 44555544 34689999999865
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.008 Score=64.17 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=72.8
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCc--EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGL----AVMGQNLALNVAEKGFP--ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGl----G~mG~~lA~~L~~~G~~--V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
.+|+|||+ |.+|..+.++|.+.||. |+..|...+. .. ++..+.+++++-+. +|++++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~---i~---------G~~~~~sl~~lp~~---~Dlavi~v 72 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE---IL---------GVKAYPSVLEIPDP---VDLAVIVV 72 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc---cC---------CccccCCHHHCCCC---CCEEEEec
Confidence 46999999 88999999999999994 5555544321 11 35677889887665 89999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCChh-------hHHHHHHHHHhcCccEecc
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL-------NTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~-------~t~~~~~~l~~~gi~~i~~ 131 (503)
|.. .+.++++++...- -..+||- +.+... ..+++.+..++.|+++++.
T Consensus 73 p~~-~~~~~l~e~~~~g-v~~~vi~-s~gf~e~g~~g~~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 73 PAK-YVPQVVEECGEKG-VKGAVVI-TAGFKEVGEEGAELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred CHH-HHHHHHHHHHhcC-CCEEEEE-CCCccccCcchHHHHHHHHHHHHHcCCEEEec
Confidence 985 7888888877632 3344442 332222 2245555666778877764
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.024 Score=60.52 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=65.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.++|.|+|.|.+|..+|..|++.|++|+++|++. +.+++..++-...+ ..+.......+.... +|+||.+.-...
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~---~d~vv~~~g~~~ 80 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELG-IELVLGEYPEEFLEG---VDLVVVSPGVPL 80 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC-CEEEeCCcchhHhhc---CCEEEECCCCCC
Confidence 3689999999999999999999999999999985 33322222111100 122223333344444 899998763221
Q ss_pred hHHHH--H-----------HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcC
Q 010702 85 PVDQT--I-----------AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG 125 (503)
Q Consensus 85 ~v~~v--l-----------~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~g 125 (503)
....+ . +.+........|-|..|++...++.-+...|+..|
T Consensus 81 ~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g 134 (450)
T PRK14106 81 DSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAG 134 (450)
T ss_pred CCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 11111 1 11112223234555556666555555556666655
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.011 Score=63.61 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=39.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH 50 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~ 50 (503)
.+|.|+|+|.+|...+..+...|.+|.++|+++++.+...+.|.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA 209 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA 209 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 47999999999999999999999999999999999887776553
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.011 Score=59.28 Aligned_cols=120 Identities=12% Similarity=0.155 Sum_probs=71.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCCh---hHHHHHHHhhcccC-CCCeeee--CCHHHHHhccCCCcEEEEe
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTT---SKVDETLDRAHREG-QLPLTGH--YTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~-V~v~dr~~---~~~~~l~~~~~~~g-~~~i~~~--~s~~e~~~~l~~~dvIil~ 79 (503)
+++.|+|+|-+|++++..|++.|.+ |+++||++ ++.+++.+.-...+ ...+... .+.+++.+.++.+|+||-+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINa 206 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNA 206 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEe
Confidence 4688999999999999999999996 99999997 66666554321110 0011111 1222332223348999999
Q ss_pred cCCChh--HHH-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 80 VKAGSP--VDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 80 vp~~~~--v~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
+|.+-. .+. .+.. ...+.++.+|+|.--... .| .+.+..+++|...+
T Consensus 207 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~ 256 (289)
T PRK12548 207 TLVGMKPNDGETNIKD-TSVFRKDLVVADTVYNPK-KT-KLLEDAEAAGCKTV 256 (289)
T ss_pred CCCCCCCCCCCCCCCc-HHhcCCCCEEEEecCCCC-CC-HHHHHHHHCCCeee
Confidence 987631 010 0100 134677889999865433 33 34455566665444
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0091 Score=60.46 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=59.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhH--HHHHHHhhcccCCCCeeee-C--CHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSK--VDETLDRAHREGQLPLTGH-Y--TPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~~-~--s~~e~~~~l~~~dvIil 78 (503)
|||+|||+ |.+|.++|..|+..|. ++.++|++... .-++.. .... ..+..+ . ++.+..+ ++|+||+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~-~~~~--~~i~~~~~~~~~y~~~~---daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSH-INTP--AKVTGYLGPEELKKALK---GADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHh-CCCc--ceEEEecCCCchHHhcC---CCCEEEE
Confidence 58999999 9999999999998885 79999988111 111111 1000 124432 2 2233333 4999999
Q ss_pred ecCCC----h-----------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 79 LVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 79 ~vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+.-.+ . .++++.+.+.++ .+..+||..||-.
T Consensus 75 taG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPv 120 (310)
T cd01337 75 PAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPV 120 (310)
T ss_pred eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 86331 1 233344555555 4677888888854
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.017 Score=59.28 Aligned_cols=124 Identities=12% Similarity=0.161 Sum_probs=69.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc---cCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR---EGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~---~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
..+|.|||+|.+|+.+|.+|++.|+ +++++|++.-....+..+... ..+.+...+....+.+..+ .+++-+.++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i-np~v~i~~~~ 102 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI-NSEVEIVPVV 102 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH-CCCcEEEEEe
Confidence 3589999999999999999999998 799999986322222111000 0000000011111222222 1566666665
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
... ..+.++++ +..-++|||++.. +.....+.+.+.+.++-++.+.+.|
T Consensus 103 ~~~-~~~~~~~~---~~~~DlVid~~D~-~~~r~~in~~~~~~~ip~i~~~~~g 151 (338)
T PRK12475 103 TDV-TVEELEEL---VKEVDLIIDATDN-FDTRLLINDLSQKYNIPWIYGGCVG 151 (338)
T ss_pred ccC-CHHHHHHH---hcCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 432 22233443 4456899999754 3333344556667788777665544
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0096 Score=60.74 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=71.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--------CCc-EEEEeCChhH-------HHHHHHhhcccCCCCeeeeC--CHHHHHh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--------GFP-ISVYNRTTSK-------VDETLDRAHREGQLPLTGHY--TPRDFVL 68 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--------G~~-V~v~dr~~~~-------~~~l~~~~~~~g~~~i~~~~--s~~e~~~ 68 (503)
|+|+|||+|.+|+.+++.|.++ +++ |.++|++... .+++.+.... +.+...... +++++..
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCCCcCCHHHHhc
Confidence 4899999999999999999873 344 3466766432 1222211100 000001112 5666654
Q ss_pred ccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhh-HHHHHHHHHhcCccE-ecccCCCChh
Q 010702 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN-TERRIHEASQKGLLY-LGMGVSGGEE 138 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~-t~~~~~~l~~~gi~~-i~~pvsgg~~ 138 (503)
.++|+||.|.|....-.....-+.+.|..|.-||..+...... -.++.+..+++|.+| +++.|.||.+
T Consensus 80 --~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~P 149 (326)
T PRK06392 80 --IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVP 149 (326)
T ss_pred --CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccc
Confidence 2589999999753221223444455677888888766543221 223333444556654 4566666543
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.01 Score=59.40 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=73.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
+++.|+|+|-.|++++..|++.|. +|+++||++++.+++.+..... +...+.. .+..+....+..+|+||-++|-+-
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~-~~~~~~~~~~~~~divINaTp~Gm 206 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVG-VDARGIEDVIAAADGVVNATPMGM 206 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEe-cCHhHHHHHHhhcCEEEEcCCCCC
Confidence 479999999999999999999997 6999999999998887642110 0000111 222211111223899999998653
Q ss_pred hHH-H-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 85 PVD-Q-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 85 ~v~-~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
.-. . .+. ...+.++.++.|.--.. ..| .+.+..+++|...++
T Consensus 207 ~~~~~~~~~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~~ 250 (283)
T PRK14027 207 PAHPGTAFD--VSCLTKDHWVGDVVYMP-IET-ELLKAARALGCETLD 250 (283)
T ss_pred CCCCCCCCC--HHHcCCCcEEEEcccCC-CCC-HHHHHHHHCCCEEEc
Confidence 100 0 011 12356778999986543 333 344555666765443
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.024 Score=53.85 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=52.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeeeC-CHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~-s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
++|-|||.|.||...+..|.+.|++|++++++.. .+..+.+.+ .+.... .+.+ ..+..+|+||.++.++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~------~i~~~~~~~~~--~~l~~adlViaaT~d~- 81 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEG------KIRWKQKEFEP--SDIVDAFLVIAATNDP- 81 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCC------CEEEEecCCCh--hhcCCceEEEEcCCCH-
Confidence 5899999999999999999999999999987653 334444332 122221 1111 1233489999888775
Q ss_pred hHHHHHHHHH
Q 010702 85 PVDQTIAALS 94 (503)
Q Consensus 85 ~v~~vl~~l~ 94 (503)
.+...+....
T Consensus 82 elN~~i~~~a 91 (202)
T PRK06718 82 RVNEQVKEDL 91 (202)
T ss_pred HHHHHHHHHH
Confidence 5666664443
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.041 Score=59.51 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=68.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec--CCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v--p~~~ 84 (503)
++|.|+|+|..|.+.++.|...|++|+++|+++...+.+.+.+. .+.......+.+.+ +|+||.+- |...
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~-----~~~~~~~~~~~l~~---~D~VV~SpGi~~~~ 84 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGV-----ATVSTSDAVQQIAD---YALVVTSPGFRPTA 84 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCC-----EEEcCcchHhHhhc---CCEEEECCCCCCCC
Confidence 57999999999999999999999999999988776655444321 11111222333344 89888874 3332
Q ss_pred h-HHHHHH---------HHHhcC--------CCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 85 P-VDQTIA---------ALSEHM--------SPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 85 ~-v~~vl~---------~l~~~l--------~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+ +...-+ ++.-.+ +...|-|..|++...++.-+...++..|..
T Consensus 85 p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~ 145 (488)
T PRK03369 85 PVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRR 145 (488)
T ss_pred HHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCc
Confidence 2 221110 121111 112455677777766666667777776643
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.026 Score=53.54 Aligned_cols=123 Identities=12% Similarity=0.138 Sum_probs=69.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|.|||+|.+|+.+|.+|+..|. +++++|.+.-....+..+.. .....+-.-+....+.+..+ .+++-+.+.+..-
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~i 100 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLREL-NSDIQVTALKERV 100 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHh-CCCCEEEEehhcC
Confidence 589999999999999999999997 79999988533333322110 00000000111122222221 1455555554321
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
..+.+. ..+..-++||+++.. +..-..+.+.+.+.++-|+.+.+.|
T Consensus 101 -~~~~~~---~~~~~~D~Vi~~~d~-~~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 101 -TAENLE---LLINNVDLVLDCTDN-FATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred -CHHHHH---HHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 111222 234456899988654 3444445566677788888776543
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.026 Score=57.19 Aligned_cols=98 Identities=10% Similarity=0.069 Sum_probs=59.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHh----hcccCCCCeee-eCCHHHHHhccCCCcEEEEec
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR----AHREGQLPLTG-HYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~----~~~~g~~~i~~-~~s~~e~~~~l~~~dvIil~v 80 (503)
||+|||+|.+|.++|..|+..|. ++.++|+++++++..... ....+..+++. ..+.+++ ++ +|+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~-~~---aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDC-AD---ADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHh-CC---CCEEEECC
Confidence 69999999999999999998886 699999987654332211 11000001222 3444443 33 99999986
Q ss_pred CC----Chh-------------HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KA----GSP-------------VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~----~~~-------------v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
-. +.. ++++...+..+- +..+++..||-.
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPv 122 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPL 122 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcH
Confidence 32 211 122224444444 566788777753
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.02 Score=49.13 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=60.2
Q ss_pred cccHHHHHHHHHHHhC----CCcEE-EEeCC--hhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 13 GLAVMGQNLALNVAEK----GFPIS-VYNRT--TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 13 GlG~mG~~lA~~L~~~----G~~V~-v~dr~--~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+|.||+.++..|.+. +++|. +++|+ .... ...... +.....+++++++.. ++|+||-|.+. ..
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~-~~dvvVE~t~~-~~ 71 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKD-WAASFP------DEAFTTDLEELIDDP-DIDVVVECTSS-EA 71 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETT-HHHHHT------HSCEESSHHHHHTHT-T-SEEEE-SSC-HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhh-hhhhcc------cccccCCHHHHhcCc-CCCEEEECCCc-hH
Confidence 8999999999999987 56654 67888 1111 111111 135678999998833 39999999554 45
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChh---hHHHHHHHHHhcCccE
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYL---NTERRIHEASQKGLLY 128 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~---~t~~~~~~l~~~gi~~ 128 (503)
+.+.+.. .|..|.-||..+..... .-.++.+..++.|.+|
T Consensus 72 ~~~~~~~---~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 72 VAEYYEK---ALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp HHHHHHH---HHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred HHHHHHH---HHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 5554444 45578888887766544 2223333444456554
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.038 Score=59.54 Aligned_cols=113 Identities=18% Similarity=0.177 Sum_probs=67.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeC--CHHHHHhccCCCcEEEEe--cC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY--TPRDFVLSIQRPRSVIIL--VK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~--s~~e~~~~l~~~dvIil~--vp 81 (503)
+++|.|+|+|..|.++|+.|.+.|++|+++|+++....++.+.. ++.... ...+.+.+ +|+||.+ +|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~------gi~~~~~~~~~~~~~~---~d~vV~Spgi~ 85 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVT------GVADISTAEASDQLDS---FSLVVTSPGWR 85 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhc------CcEEEeCCCchhHhcC---CCEEEeCCCCC
Confidence 35799999999999999999999999999998876554433321 122221 22333344 8888876 34
Q ss_pred CChh-HHHHHH---------HHHhc------C-CC-CCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 82 AGSP-VDQTIA---------ALSEH------M-SP-GDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 82 ~~~~-v~~vl~---------~l~~~------l-~~-g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
.+.+ +...-+ ++.-. . .+ ..|-|..|+++..++.-+...++..|..
T Consensus 86 ~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~ 149 (473)
T PRK00141 86 PDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFA 149 (473)
T ss_pred CCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCc
Confidence 3322 222110 12111 1 12 2455666777666666666777766644
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0091 Score=60.56 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=59.6
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHH--HHHHHhhcccCCCCeeeeC---CHHHHHhccCCCcEEEEe
Q 010702 8 RIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKV--DETLDRAHREGQLPLTGHY---TPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 8 ~IgIIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~--~~l~~~~~~~g~~~i~~~~---s~~e~~~~l~~~dvIil~ 79 (503)
||+|||+ |.+|.++|..|+..|+ ++.++|+++... -++.. .... .++..+. ++.+.+++ +|+||++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~-~~~~--~~i~~~~~~~~~~~~~~d---aDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSH-IPTA--ASVKGFSGEEGLENALKG---ADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhc-CCcC--ceEEEecCCCchHHHcCC---CCEEEEe
Confidence 6999999 9999999999998886 799999987211 11111 1100 1233321 22334444 9999998
Q ss_pred cCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.-.+. .++++...+..+ .++.+||..||-.
T Consensus 75 aG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPv 119 (312)
T TIGR01772 75 AGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPV 119 (312)
T ss_pred CCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 74321 233444555555 4777888888854
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.027 Score=56.34 Aligned_cols=116 Identities=14% Similarity=0.046 Sum_probs=80.6
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|.| .|.+|..+-.+|...|++ .++..+|.+ .++.. ++..+.|++|+-+.. .+|++++++|..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v~---------G~~~y~sv~dlp~~~-~~Dlavi~vpa~ 74 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTVL---------GLPVFDSVKEAVEET-GANASVIFVPAP 74 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcceec---------CeeccCCHHHHhhcc-CCCEEEEecCHH
Confidence 45899999 599999999999999999 777777762 11111 367788999987742 269999999985
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhh-HHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLN-TERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~-t~~~~~~l~~~gi~~i~~pvsg 135 (503)
.+.+++++....--+ .+||-. ...... .+++.+..++.|+++++.-..|
T Consensus 75 -~v~~~l~e~~~~Gvk-~avIis-~Gf~e~~~~~l~~~a~~~girilGPNc~G 124 (286)
T TIGR01019 75 -FAADAIFEAIDAGIE-LIVCIT-EGIPVHDMLKVKRYMEESGTRLIGPNCPG 124 (286)
T ss_pred -HHHHHHHHHHHCCCC-EEEEEC-CCCCHHHHHHHHHHHHHcCCEEECCCCce
Confidence 677788777653222 344433 333333 3466667778899999865544
|
ATP citrate lyases appear to form an outgroup. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.017 Score=58.87 Aligned_cols=93 Identities=12% Similarity=0.172 Sum_probs=58.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccC-CCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQ-RPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~-~~dvIil~vp~~~~ 85 (503)
.+|+|+|+|-+|..-.+.....|.+|+++||++++.+.+.+.|+.. ....+.++..+.++ ..|+||.+++ ...
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~-----~i~~~~~~~~~~~~~~~d~ii~tv~-~~~ 241 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH-----VINSSDSDALEAVKEIADAIIDTVG-PAT 241 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE-----EEEcCCchhhHHhHhhCcEEEECCC-hhh
Confidence 4799999997776555555568999999999999998888776542 22211122222211 1789999988 555
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+...++. |+++-.++-.+..
T Consensus 242 ~~~~l~~----l~~~G~~v~vG~~ 261 (339)
T COG1064 242 LEPSLKA----LRRGGTLVLVGLP 261 (339)
T ss_pred HHHHHHH----HhcCCEEEEECCC
Confidence 5544443 4444444444443
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.016 Score=58.25 Aligned_cols=120 Identities=17% Similarity=0.179 Sum_probs=73.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh---hHHHHHHHhhcccCCCCeeeeCCHHH---HHhccCCCcEEEEe
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT---SKVDETLDRAHREGQLPLTGHYTPRD---FVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~---~~~~~l~~~~~~~g~~~i~~~~s~~e---~~~~l~~~dvIil~ 79 (503)
+++.|||+|-.+++++..|+..|. +|+++||++ ++.+.+.+.........+. ..++++ +.+.+.++|+||-+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~-~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVT-VTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEE-EechhhhhhhhhhcccCCEEEEC
Confidence 479999999999999999999896 799999995 4777776542110000012 222321 22233458999999
Q ss_pred cCCChh--HHH-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 80 VKAGSP--VDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 80 vp~~~~--v~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+|.+-. .+. .... ...++++.++.|.--. |..| .+.+..+++|...++
T Consensus 204 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 204 TKVGMKPLENESLVND-ISLLHPGLLVTECVYN-PHMT-KLLQQAQQAGCKTID 254 (288)
T ss_pred CCCCCCCCCCCCCCCc-HHHCCCCCEEEEecCC-CccC-HHHHHHHHCCCeEEC
Confidence 987531 111 1100 1235678899998643 3334 455556677765544
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0091 Score=55.31 Aligned_cols=121 Identities=11% Similarity=0.078 Sum_probs=62.3
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
||.|||+|.+|+.++.+|++.|. +++++|.+.-....+..+.......+-..+....+.++.+ .+++=+.+.+... .
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~l-np~v~i~~~~~~~-~ 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREI-NPFVKIEAINIKI-D 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHH-CCCCEEEEEEeec-C
Confidence 58999999999999999999998 5999998862222222110000000000011111122221 1344444443321 1
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc-CccEecccCC
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK-GLLYLGMGVS 134 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~-gi~~i~~pvs 134 (503)
.+-+++ .+..-++||+++- .+..-..+.+.+.++ ++-|+.+...
T Consensus 79 ~~~~~~---~l~~~DlVi~~~d-~~~~r~~i~~~~~~~~~ip~i~~~~~ 123 (174)
T cd01487 79 ENNLEG---LFGDCDIVVEAFD-NAETKAMLAESLLGNKNKPVVCASGM 123 (174)
T ss_pred hhhHHH---HhcCCCEEEECCC-CHHHHHHHHHHHHHHCCCCEEEEehh
Confidence 112222 3445689999844 333333355555554 7777765433
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.026 Score=57.41 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=60.5
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCC--CcEEEEeCChhHHH--HHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 5 ALSRIGLAGL-AVMGQNLALNVAEKG--FPISVYNRTTSKVD--ETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 5 ~~~~IgIIGl-G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~--~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
+|.||+|||+ |.+|..+|..|+..+ .++.++|++....+ ++...... ..+...+++.+..+.++.+|+||++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~---~~v~~~td~~~~~~~l~gaDvVVit 83 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTP---AKVTGYADGELWEKALRGADLVLIC 83 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcC---ceEEEecCCCchHHHhCCCCEEEEC
Confidence 4679999999 999999999999665 58999999432211 22211111 1233333322212233349999998
Q ss_pred cCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
.-... .++++++.+.++ .+..+|+..||.....+
T Consensus 84 aG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv~~ 132 (321)
T PTZ00325 84 AGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNSTV 132 (321)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHH
Confidence 74321 122233444443 45567777777544333
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0076 Score=61.83 Aligned_cols=92 Identities=15% Similarity=0.242 Sum_probs=58.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcE---EEEeCChhHHHHHHHhhcccCCCCeeeeC-CHHHHHhccCCCcEEEEec
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPI---SVYNRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V---~v~dr~~~~~~~l~~~~~~~g~~~i~~~~-s~~e~~~~l~~~dvIil~v 80 (503)
++||+|||+ |..|..+.+.|.++||.+ ....++.+.-+.+.-.+ . .+...+ +..++ +. +|+||+|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g-~----~i~v~d~~~~~~-~~---vDvVf~A~ 71 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG-K----ELKVEDLTTFDF-SG---VDIALFSA 71 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC-c----eeEEeeCCHHHH-cC---CCEEEECC
Confidence 368999995 999999999999988864 55544433222221111 1 122221 22222 34 99999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
|.+ ...++...+. ..|..|||.|+.+
T Consensus 72 g~g-~s~~~~~~~~---~~G~~VIDlS~~~ 97 (334)
T PRK14874 72 GGS-VSKKYAPKAA---AAGAVVIDNSSAF 97 (334)
T ss_pred ChH-HHHHHHHHHH---hCCCEEEECCchh
Confidence 986 4555555543 4678999999753
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.01 Score=59.10 Aligned_cols=74 Identities=22% Similarity=0.321 Sum_probs=58.3
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||-|. +|.++|..|...|..|+++++.. .++++.+.+ +|+||.++..+..
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---------------------~~l~~~~~~---ADIvi~avG~p~~ 215 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---------------------KNLRHHVRN---ADLLVVAVGKPGF 215 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---------------------CCHHHHHhh---CCEEEEcCCCccc
Confidence 5799999888 99999999999999999997542 245566666 9999999965543
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+.. ..+++|.+|||.+...
T Consensus 216 v~~------~~vk~gavVIDvGin~ 234 (285)
T PRK10792 216 IPG------EWIKPGAIVIDVGINR 234 (285)
T ss_pred ccH------HHcCCCcEEEEccccc
Confidence 332 4578999999998653
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.025 Score=57.41 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=59.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHh---CCCcEEEEeCChhHH---HHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEE
Q 010702 7 SRIGLAGL-AVMGQNLALNVAE---KGFPISVYNRTTSKV---DETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~---~G~~V~v~dr~~~~~---~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIi 77 (503)
|||+|||+ |.+|..++..|.. .++++.++|+++... -++.... .. ..+.. .+++.+.++ .+|+||
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~-~~--~~i~~~~~~d~~~~l~---~~DiVI 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIP-TA--VKIKGFSGEDPTPALE---GADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCC-CC--ceEEEeCCCCHHHHcC---CCCEEE
Confidence 58999999 9999999988854 346899999986431 1221111 00 02332 234344444 499999
Q ss_pred EecCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 78 ILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 78 l~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
+|.-... .++++++.+.++ .+..+|+..||-..
T Consensus 75 itaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D 122 (312)
T PRK05086 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVN 122 (312)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchH
Confidence 9974311 233444555554 46678888887543
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.029 Score=59.43 Aligned_cols=110 Identities=17% Similarity=0.099 Sum_probs=66.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh--
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~-- 84 (503)
.+|.|||+|.+|.++|+.|.+.|++|+++|+++.......... . ....+.+.+..+ +|+||.+.+...
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~--~-----~~~~~~~~~~~~---~dlvV~s~gi~~~~ 73 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIH--E-----RYLENAEEFPEQ---VDLVVRSPGIKKEH 73 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHh--h-----hhcCCcHHHhcC---CCEEEECCCCCCCc
Confidence 4799999999999999999999999999998876433211000 0 011233333344 888888764432
Q ss_pred -hHHHHH--------H-HH-Hhc--C-CCCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 85 -PVDQTI--------A-AL-SEH--M-SPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 85 -~v~~vl--------~-~l-~~~--l-~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
.++... + .+ ... . ....|-|..|++...++.-+...++..|.
T Consensus 74 ~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~ 129 (418)
T PRK00683 74 PWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGI 129 (418)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 222222 1 11 111 1 22346677777776666667777776654
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.004 Score=55.02 Aligned_cols=123 Identities=16% Similarity=0.206 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|.|+|+|.+|+.+|.+|+..|. +++++|.+.=..+.+..+.. .....+..-+....+.+..+ .|++=+.+.+..
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~-np~~~v~~~~~~- 80 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEI-NPDVEVEAIPEK- 80 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHH-STTSEEEEEESH-
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHh-cCceeeeeeecc-
Confidence 589999999999999999999998 69999987543332222100 00000011111222333322 134445555543
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
..+..+.++. ..-++||+++.. +.....+.+.+.+.++.|+.+.+.|
T Consensus 81 ~~~~~~~~~~---~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 81 IDEENIEELL---KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp CSHHHHHHHH---HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred cccccccccc---cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 2233344444 345799998765 4455567777888899898887664
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.027 Score=51.25 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=50.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.+|.|||.|.+|...++.|.+.|++|++++ ++..+++.+.. .+... ..+++ .++..+|+||.++.++ .
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~------~i~~~~~~~~~--~dl~~a~lViaaT~d~-e 82 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELP------YITWKQKTFSN--DDIKDAHLIYAATNQH-A 82 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhcc------CcEEEecccCh--hcCCCceEEEECCCCH-H
Confidence 579999999999999999999999999995 34444444321 12221 12221 1244589888887664 6
Q ss_pred HHHHHHHHH
Q 010702 86 VDQTIAALS 94 (503)
Q Consensus 86 v~~vl~~l~ 94 (503)
+...+....
T Consensus 83 ~N~~i~~~a 91 (157)
T PRK06719 83 VNMMVKQAA 91 (157)
T ss_pred HHHHHHHHH
Confidence 666665444
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.022 Score=55.28 Aligned_cols=121 Identities=14% Similarity=0.117 Sum_probs=71.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeC-CHHHH----HhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHY-TPRDF----VLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~-s~~e~----~~~l~~~dvIil~ 79 (503)
..+|.|||+|-.|+.++.+|+..|. +++++|.+.-....+..+.... .-..-. .-.++ +..+ .+++.+.+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~---~~dvG~~~k~~~a~~~l~~~-np~v~v~~ 102 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHW---EEDLGKNPKPLSAKWKLERF-NSDIKIET 102 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccC---hhhcCchHHHHHHHHHHHHh-CCCCEEEE
Confidence 3589999999999999999999997 6889988765544443321000 000001 11111 1211 26777776
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
.+.. ..++-++++ +..-++|||+.-. +..-..+.+.+.+.++-++.+.+.|
T Consensus 103 ~~~~-~~~~~~~~~---l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 103 FVGR-LSEENIDEV---LKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred Eecc-CCHHHHHHH---HhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence 5542 112223333 4456899998765 3333344555677788888776654
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.044 Score=58.80 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=70.0
Q ss_pred CCCcEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeee-CCHHHHHhccCCCcEEEEec-
Q 010702 5 ALSRIGLAGLAVMGQN-LALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILV- 80 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~-~s~~e~~~~l~~~dvIil~v- 80 (503)
..++|.|||+|..|.+ +|+.|.+.|++|+++|.++. ..+++.+.+ +... ....+.+.. +|+||.+-
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~g-------i~~~~~~~~~~~~~---~d~vv~spg 75 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELG-------AIIFIGHDAENIKD---ADVVVYSSA 75 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHCCC---CCEEEECCC
Confidence 3468999999999999 89999999999999997653 233443332 2332 122233333 89888763
Q ss_pred -CCC-hhHHHHH---------HHHHhc-CC-CCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 81 -KAG-SPVDQTI---------AALSEH-MS-PGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 81 -p~~-~~v~~vl---------~~l~~~-l~-~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
|.+ ..++... -+++.. +. ...|-|..|++...++.-+...++..|.
T Consensus 76 i~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 76 IPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred CCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 332 2233221 123222 22 2356777788887777777777877764
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.062 Score=55.19 Aligned_cols=128 Identities=16% Similarity=0.272 Sum_probs=70.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHh--------CCCc--E-EEEeCChhH-------HHHHHHhhcccCCC-Cee-----eeC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAE--------KGFP--I-SVYNRTTSK-------VDETLDRAHREGQL-PLT-----GHY 61 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~--------~G~~--V-~v~dr~~~~-------~~~l~~~~~~~g~~-~i~-----~~~ 61 (503)
..+|+|+|+|.+|+.+++.|.+ .|.+ | .+.|++... .+++.+.....+.. .+. ...
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 4689999999999999998877 5643 3 345654221 12222211110000 010 011
Q ss_pred CHHHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChh-hHHHHHHHHHhcCccEe-cccCCCChh
Q 010702 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYL-GMGVSGGEE 138 (503)
Q Consensus 62 s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~-~t~~~~~~l~~~gi~~i-~~pvsgg~~ 138 (503)
++++++... ++|+||-+++. ....+.+.. .+..|.-||..++.... .-+++.+..+++|..+. .+.+++|.+
T Consensus 82 ~~~ell~~~-~~DVvVd~t~~-~~a~~~~~~---al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 82 SPEEIVEEI-DADIVVDVTND-KNAHEWHLE---ALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred CHHHHHhcC-CCCEEEECCCc-HHHHHHHHH---HHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence 667777532 38999998865 344444443 34577778776664211 22234444455666554 455776654
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.02 Score=58.42 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=58.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHH--HHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKV--DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~--~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.||+|||+ |.+|..+|..|+..+. ++.++|+++... .++...... ..+....+..+..+.++.+|+||++.-
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~---~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTP---AQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcC---ceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 58999999 9999999999997765 799999987211 112111110 123321223222333444999999863
Q ss_pred CC----hh-----------HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AG----SP-----------VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~----~~-----------v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.+ .. ++++++.+.++- +..+|+..||-.
T Consensus 96 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPv 138 (323)
T PLN00106 96 VPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPV 138 (323)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCc
Confidence 21 11 222333444433 566777777754
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.041 Score=55.20 Aligned_cols=117 Identities=15% Similarity=0.017 Sum_probs=78.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+.||.|.|. |.+|..+..+|.+.||+ .+|=.+|.. .+++. ++..+.+++|+-+.. .+|+.++++|..
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v~---------G~~~y~sv~dlp~~~-~~DlAvi~vp~~ 76 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTVL---------GLPVFNTVAEAVEAT-GANASVIYVPPP 76 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeEe---------CeeccCCHHHHhhcc-CCCEEEEEcCHH
Confidence 468999996 88999999999999998 666555541 11111 366788998887621 269999999985
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
.+.+++++....--+ ..||-.+.-...+.+++.+..++.|+++++...+|
T Consensus 77 -~v~~~l~e~~~~gvk-~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~G 126 (291)
T PRK05678 77 -FAADAILEAIDAGID-LIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPG 126 (291)
T ss_pred -HHHHHHHHHHHCCCC-EEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCc
Confidence 677777776653222 33443333332333466777788899999865554
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.012 Score=58.83 Aligned_cols=73 Identities=12% Similarity=0.273 Sum_probs=55.0
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||.|. .|+++|..|.+.|.+|++++|... ++.+.+.+ +|+||.+++.+..
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~---------------------~L~~~~~~---aDIvI~AtG~~~~ 215 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ---------------------NLPELVKQ---ADIIVGAVGKPEL 215 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch---------------------hHHHHhcc---CCEEEEccCCCCc
Confidence 5799999997 999999999999999999997321 22333344 9999999965432
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+. . +.+++|.+|+|.+..
T Consensus 216 v~---~---~~lk~gavViDvg~n 233 (283)
T PRK14192 216 IK---K---DWIKQGAVVVDAGFH 233 (283)
T ss_pred CC---H---HHcCCCCEEEEEEEe
Confidence 22 1 347899999998754
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.06 Score=57.67 Aligned_cols=113 Identities=15% Similarity=0.043 Sum_probs=67.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~~ 84 (503)
++|.|||+|..|.+.|..|.+.|++|+++|+.+.....+.+.+ +.......+.+. .+|+||.+ +|...
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g-------~~~~~~~~~~~~---~~d~vv~sp~i~~~~ 79 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAG-------ITTADLRTADWS---GFAALVLSPGVPLTH 79 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcC-------ccccCCChhHHc---CCCEEEECCCCCccC
Confidence 5799999999999999999999999999998765444444332 222211112223 38988864 23221
Q ss_pred -----hHHHHHH---------HHHhcC------CCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 85 -----PVDQTIA---------ALSEHM------SPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 85 -----~v~~vl~---------~l~~~l------~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
.+....+ ++.... ....|-|..|++...++.-+...++..|....
T Consensus 80 ~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~ 144 (460)
T PRK01390 80 PKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQ 144 (460)
T ss_pred CcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeE
Confidence 2333221 122111 22345566677776666666677777665443
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.058 Score=51.37 Aligned_cols=73 Identities=10% Similarity=0.059 Sum_probs=49.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeee---CCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGH---YTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~---~s~~e~~~~l~~~dvIil~vp~ 82 (503)
.+|.|||.|.+|..-++.|.+.|.+|++++.+.. .+..+.+.+ ++... ....+ +. .+++||.++.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~------~i~~~~~~~~~~d-l~---~~~lVi~at~d 79 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQG------GITWLARCFDADI-LE---GAFLVIAATDD 79 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcC------CEEEEeCCCCHHH-hC---CcEEEEECCCC
Confidence 5899999999999999999999999999987654 344454433 23221 12233 33 38888888666
Q ss_pred ChhHHHHH
Q 010702 83 GSPVDQTI 90 (503)
Q Consensus 83 ~~~v~~vl 90 (503)
. .+..-+
T Consensus 80 ~-~ln~~i 86 (205)
T TIGR01470 80 E-ELNRRV 86 (205)
T ss_pred H-HHHHHH
Confidence 4 344333
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.029 Score=57.25 Aligned_cols=98 Identities=15% Similarity=0.146 Sum_probs=59.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChhH--HH----HHHHhh-cccCCCCeeeeCCHHHHHhccC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VD----ETLDRA-HREGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~~----~l~~~~-~~~g~~~i~~~~s~~e~~~~l~ 71 (503)
+||+|||+ |.+|.++|..|+..|. ++.++|++++. ++ ++.... .... ++....+..+.+++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~--~~~i~~~~~~~~~d-- 78 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLA--EIVITDDPNVAFKD-- 78 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccC--ceEEecCcHHHhCC--
Confidence 58999999 9999999999998886 69999995432 22 111110 0000 12233333333343
Q ss_pred CCcEEEEecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 72 RPRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 72 ~~dvIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+|+||++.-. +. .++++...+..+.++..++|..||-
T Consensus 79 -aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (322)
T cd01338 79 -ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNP 130 (322)
T ss_pred -CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCc
Confidence 9999998632 11 1344445666665446677777753
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.034 Score=46.21 Aligned_cols=88 Identities=13% Similarity=0.175 Sum_probs=60.1
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhh
Q 010702 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDK 262 (503)
Q Consensus 183 ~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~ 262 (503)
.+.++|++.|.+.+..+++++|...++++.| +|..++.+.+. ...--+ ...+...-.+++. -+-||
T Consensus 3 ~AEl~K~~~N~~~a~~iaf~Nel~~lce~~g-iD~~~V~~~~~---~d~ri~------~~~~~pg~g~GG~----ClpkD 68 (96)
T PF00984_consen 3 EAELIKYAENAFRATKIAFANELARLCEKLG-IDVYEVIEAAN---TDPRIG------PHYLRPGPGFGGS----CLPKD 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHHHHH---TSTTTT------SSS-S-SSS--SS----CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHc---cCcccc------cccCCCCCCCCCc----chhhh
Confidence 5789999999999999999999999999999 99999998873 211000 0111211112222 34445
Q ss_pred cCCcchHHHHHHHHHHcCCCcchHHHHH
Q 010702 263 TGMKGTGKWTVQQAAELSVAAPTIAASL 290 (503)
Q Consensus 263 ~~~kgtG~~~~~~A~~~gvp~p~~~~Av 290 (503)
.. .....+.++|.+.+++.+++
T Consensus 69 ~~------~L~~~~~~~g~~~~ll~~~~ 90 (96)
T PF00984_consen 69 PY------ALIYLAKELGYPPQLLEAVI 90 (96)
T ss_dssp HH------HHHHHHHHTTSHHHHHHHHH
T ss_pred HH------HHHHHHHHcCCCHHHHHHHH
Confidence 42 56678999999988777553
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.02 Score=54.75 Aligned_cols=120 Identities=14% Similarity=0.197 Sum_probs=63.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.+|.|||+|.+|+.+|.+|++.|.. ++++|.+.=....+..+.......+-.-+....+-+..+ .+++-+..++.. .
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~l-np~v~v~~~~~~-i 106 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEI-NPFVEIEAHNEK-I 106 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHH-CCCCEEEEEeee-c
Confidence 5899999999999999999999985 999998842222222110000000000011111111211 144445444432 1
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc-CccEeccc
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK-GLLYLGMG 132 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~-gi~~i~~p 132 (503)
..+.+.++ +..-++|||++-. +.....+.+.+.+. ++-++.+.
T Consensus 107 ~~~~~~~~---~~~~DvVI~a~D~-~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 107 DEDNIEEL---FKDCDIVVEAFDN-AETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred CHHHHHHH---HcCCCEEEECCCC-HHHHHHHHHHHHHhCCCCEEEee
Confidence 12222233 3456899998543 33444455666666 77777553
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.038 Score=62.20 Aligned_cols=99 Identities=9% Similarity=0.111 Sum_probs=74.0
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCChhhh--------hcCC-c
Q 010702 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGA--------RHGP-S 145 (503)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~~~a--------~~G~-~ 145 (503)
||+|+|.. .+.+++.++.+.++++.+|.|.++++....+...+.+......|++. |+.|.+..- ..|. .
T Consensus 1 vila~Pv~-~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVA-QTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHH-HHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 68999984 78999999999999999999999998766665555444323568885 888876432 2444 3
Q ss_pred ccC---CCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCc
Q 010702 146 LMP---GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG 181 (503)
Q Consensus 146 i~~---gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~ 181 (503)
+++ ..++++++.++++++.+| ..++.+.+.
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~G------a~~~~~~~~ 112 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAAR------ADVRAMSAE 112 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcC------CEEEECCHH
Confidence 333 347789999999999999 567777664
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.017 Score=52.60 Aligned_cols=75 Identities=19% Similarity=0.387 Sum_probs=51.2
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||-+ .+|.+++..|.++|..|++++... .++++.++. +|+||.++....-
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------------------~~l~~~~~~---ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------------------KNLQEITRR---ADIVVSAVGKPNL 92 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------------------SSHHHHHTT---SSEEEE-SSSTT-
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------------------Ccccceeee---ccEEeeeeccccc
Confidence 579999986 699999999999999999987553 244555555 9999999977543
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
++ ...+++|.+|||++....
T Consensus 93 i~------~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 93 IK------ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp B-------GGGS-TTEEEEE--CEEE
T ss_pred cc------cccccCCcEEEecCCccc
Confidence 22 235889999999988654
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.052 Score=54.59 Aligned_cols=105 Identities=12% Similarity=0.167 Sum_probs=78.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhh
Q 010702 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (503)
Q Consensus 326 ~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~ 405 (503)
++++.+|.++|.+..+.++.++|++.+-++ .++|.+++.++.+.| -.+|+.++.....+... +. ++.
T Consensus 163 G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~------~Gld~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-~~-----~~~ 229 (292)
T PRK15059 163 GDGQTCKVANQIIVALNIEAVSEALLFASK------AGADPVRVRQALMGG-FASSRILEVHGERMIKR-TF-----NPG 229 (292)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHcC-cccCHHHHhhchhhhcC-CC-----CCC
Confidence 788999999999999999999999988774 349999999999877 46788776554333222 11 122
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010702 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (503)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (503)
|. +.-...+++-++..|-+.|+|+|....+..+|+...
T Consensus 230 f~--l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~ 267 (292)
T PRK15059 230 FK--IALHQKDLNLALQSAKALALNLPNTATCQELFNTCA 267 (292)
T ss_pred Cc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 32 223345678899999999999999998888776543
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.027 Score=57.89 Aligned_cols=124 Identities=11% Similarity=0.138 Sum_probs=70.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCC--CeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQL--PLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~--~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
..+|.|||+|.+|+.+|.+|++.|. +++++|.+.-....+..+.... ... +...+....+.+..+ .+++-+....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i-np~v~v~~~~ 102 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI-NSDVRVEAIV 102 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH-CCCcEEEEEe
Confidence 3589999999999999999999998 8999999864443333221000 000 000011112222222 1555555554
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
... ..+.+.+ .+..-++|||++.. +.....+.+.+.+.++-++.+.+.|
T Consensus 103 ~~~-~~~~~~~---~~~~~DlVid~~Dn-~~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 103 QDV-TAEELEE---LVTGVDLIIDATDN-FETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred ccC-CHHHHHH---HHcCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEeeee
Confidence 321 1222223 34456999999764 3444445566667788777665443
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.018 Score=58.37 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=49.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIil~vp 81 (503)
|+|.|+| .|.+|+.++..|.++||+|.+.+|++++...+...+.. +.. ..+++.+.+.++.+|+||.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~-----~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAE-----LVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCE-----EEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4899998 59999999999999999999999998765444332211 111 1244445455556899888754
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.014 Score=59.87 Aligned_cols=93 Identities=16% Similarity=0.239 Sum_probs=56.0
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEE---EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPIS---VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~---v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|++|+|+|+ |..|..|.+.|.+++|.+. .. ++.++..+........ +.+... +..++ ++ +|++|+++|
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~~--l~~~~~-~~~~~-~~---vD~vFla~p 75 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGKN--LRVREV-DSFDF-SQ---VQLAFFAAG 75 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCcc--eEEeeC-ChHHh-cC---CCEEEEcCC
Confidence 469999996 9999999999998777532 23 2222221111110010 012212 22333 44 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.+ .....+..+. ..|..|||.|+.+
T Consensus 76 ~~-~s~~~v~~~~---~~G~~VIDlS~~f 100 (336)
T PRK05671 76 AA-VSRSFAEKAR---AAGCSVIDLSGAL 100 (336)
T ss_pred HH-HHHHHHHHHH---HCCCeEEECchhh
Confidence 75 4455555543 3688999999765
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.036 Score=53.42 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=58.3
Q ss_pred CCcCCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 1 M~~~~~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|+...++++-|.| .|.+|..++..|+++|++|.+.+|++++.+++.+... +.-.. ..++..=
T Consensus 1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------~~~~~---~~~~~~D 63 (241)
T PRK07454 1 MSLNSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELR--------------STGVK---AAAYSID 63 (241)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------hCCCc---EEEEEcc
Confidence 5555566788887 4999999999999999999999999877665543210 00001 2222222
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.+...+...++.+.....+=+++|++...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 64 LSNPEAIAPGIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 334445555666665544445677776543
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0083 Score=57.44 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=51.2
Q ss_pred CcEEEEcccHHHHHHHHHH--HhCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQNLALNV--AEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L--~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
.+|+|||+|.+|..++..+ ...|+++. ++|+++++...... + ..+....++.++++. ..+|.|++|+|..
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~-g-----~~v~~~~~l~~li~~-~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIG-G-----IPVYHIDELEEVVKE-NDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeC-C-----eEEcCHHHHHHHHHH-CCCCEEEEeCCch
Confidence 4799999999999999863 35688766 57988765432111 1 012223455666543 2489999999986
Q ss_pred hhHHHHHHHHH
Q 010702 84 SPVDQTIAALS 94 (503)
Q Consensus 84 ~~v~~vl~~l~ 94 (503)
...++.+.+.
T Consensus 158 -~~~~i~~~l~ 167 (213)
T PRK05472 158 -AAQEVADRLV 167 (213)
T ss_pred -hHHHHHHHHH
Confidence 3445554443
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.076 Score=56.71 Aligned_cols=120 Identities=17% Similarity=0.143 Sum_probs=71.5
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh--HHHHHHHhhcccCCCCeeee---CCHHHHHhccCCCcEEEEec--
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS--KVDETLDRAHREGQLPLTGH---YTPRDFVLSIQRPRSVIILV-- 80 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~~~~~g~~~i~~~---~s~~e~~~~l~~~dvIil~v-- 80 (503)
.|.|||+|..|.++|+.|.+.|++|+++|..+. ..+++.+... ++... .+. +.+.+ +|+||.+-
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~-----g~~~~~~~~~~-~~~~~---~d~vV~sp~i 78 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFP-----DVELRCGGFDC-ELLVQ---ASEIIISPGL 78 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcC-----CcEEEeCCCCh-HHhcC---CCEEEECCCC
Confidence 599999999999999999999999999997643 2233433100 12221 233 33344 88887753
Q ss_pred CCChh-HHHHH---------HHHHhc-CCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC
Q 010702 81 KAGSP-VDQTI---------AALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (503)
Q Consensus 81 p~~~~-v~~vl---------~~l~~~-l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg 136 (503)
|.+.+ +.... -+++.. +....|-|..|++...++.-+...|...|..+.-++..|.
T Consensus 79 ~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~ 145 (448)
T PRK03803 79 ALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGT 145 (448)
T ss_pred CCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCH
Confidence 33322 22221 133322 2333466667777766666677777777765554444443
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.092 Score=53.56 Aligned_cols=99 Identities=13% Similarity=0.161 Sum_probs=60.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--hHHHHH----HHhhcccCCCCeeeeCCHHHHHhccCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTT--SKVDET----LDRAHREGQLPLTGHYTPRDFVLSIQR 72 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l----~~~~~~~g~~~i~~~~s~~e~~~~l~~ 72 (503)
.||+|||+ |.+|.++|..|...|. ++.++|+++ ++++.. ........ .++....+..+.+++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~-~~~~i~~~~~~~~~d--- 79 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLL-AGVVATTDPEEAFKD--- 79 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcccccc-CCcEEecChHHHhCC---
Confidence 58999998 9999999999998885 799999964 222221 11110000 012222333333344
Q ss_pred CcEEEEecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 73 PRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 73 ~dvIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
||+||++.-. +. .++++...+.++.++..+|+..||-
T Consensus 80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 131 (323)
T TIGR01759 80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNP 131 (323)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 9999998632 11 1444556666666547777777764
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.018 Score=58.97 Aligned_cols=110 Identities=16% Similarity=0.227 Sum_probs=71.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-C-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEK-G-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
++|.|+|+ |.||+.+++.|+.+ | .++++++|+.++...+..+... .. ..++++.... +|+|+.+....
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~-----~~-i~~l~~~l~~---aDiVv~~ts~~ 226 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG-----GK-ILSLEEALPE---ADIVVWVASMP 226 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc-----cc-HHhHHHHHcc---CCEEEECCcCC
Confidence 57999998 89999999999864 5 5899999999888877654311 01 1245555554 99999887553
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (503)
..+ +++. ..+.++.+++|.+-- .+.... +...|++.++.++.
T Consensus 227 ~~~--~I~~--~~l~~~~~viDiAvP--RDVd~~---v~~~~V~v~~gG~V 268 (340)
T PRK14982 227 KGV--EIDP--ETLKKPCLMIDGGYP--KNLDTK---VQGPGIHVLKGGIV 268 (340)
T ss_pred cCC--cCCH--HHhCCCeEEEEecCC--CCCCcc---cCCCCEEEEeCCcc
Confidence 221 1211 124688999998743 333321 12367888876654
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.029 Score=53.15 Aligned_cols=125 Identities=13% Similarity=0.237 Sum_probs=70.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-cc--CCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-RE--GQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~--g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
..+|.|||+|.+|..++.+|+..|. +++++|.+.-....+..+.. .. ...+...+....+.++.+ .+++-+..+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~l-Np~v~i~~~~ 97 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQEL-NPNVKLSIVE 97 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHH-CCCCEEEEEe
Confidence 3689999999999999999999997 59999877533222221100 00 000000011112222222 2666666654
Q ss_pred CChh-HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 82 AGSP-VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 82 ~~~~-v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
.... ..+-..++ +.+-++||++... +.....+.+.+.++++-|+.+.+.|
T Consensus 98 ~~~~~~~~~~~~~---~~~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 98 EDSLSNDSNIEEY---LQKFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred cccccchhhHHHH---HhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 4211 01122223 3455899988543 4555566777888888888776544
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.072 Score=54.40 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=59.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChh--HHH----HHHHhh-cccCCCCeeeeCCHHHHHhcc
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTS--KVD----ETLDRA-HREGQLPLTGHYTPRDFVLSI 70 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~--~~~----~l~~~~-~~~g~~~i~~~~s~~e~~~~l 70 (503)
..||+|||+ |.+|.++|..|+..|. ++.++|+++. +++ ++.... .... ++....+..+.+++
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~--~~~i~~~~y~~~~d- 80 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLA--GVVITDDPNVAFKD- 80 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcC--CcEEecChHHHhCC-
Confidence 358999998 9999999999988764 6999999543 221 122111 0000 12333333333444
Q ss_pred CCCcEEEEecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 71 QRPRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 71 ~~~dvIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+|+||++.-. +. .++++...+.++.++..++|..||-
T Consensus 81 --aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 132 (326)
T PRK05442 81 --ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNP 132 (326)
T ss_pred --CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 9999997632 21 1344445666666567788877764
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.048 Score=57.24 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=72.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCC----------hhHHHHHHHhhcccCCC-CeeeeCCHHHHHhccCCCc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRT----------TSKVDETLDRAHREGQL-PLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~~~~~g~~-~i~~~~s~~e~~~~l~~~d 74 (503)
++|+|.|.|++|+.+|+.|.+.|.+|+ +.|.+ .+.+.+..+.......+ +... -+.+++... +||
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~-i~~~e~l~~--~~D 283 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDP-IDPDDILVE--PCD 283 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceE-ecCccceec--ccc
Confidence 589999999999999999999999988 77876 55443333221100000 0111 133444432 489
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+++-|--.+.-..+.+.. + +=++|+...|... +.+..+.|.++|+.|+.
T Consensus 284 vliP~Al~~~I~~~na~~----i-~ak~I~egAN~p~--t~ea~~~L~~rGI~~~P 332 (410)
T PLN02477 284 VLIPAALGGVINKENAAD----V-KAKFIVEAANHPT--DPEADEILRKKGVVVLP 332 (410)
T ss_pred EEeeccccccCCHhHHHH----c-CCcEEEeCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 888775544222233333 3 4478888888764 55677889999998874
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.018 Score=53.13 Aligned_cols=84 Identities=18% Similarity=0.294 Sum_probs=57.7
Q ss_pred CCCcEEEEcccHHHHHHHH-HHH-hCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 5 ALSRIGLAGLAVMGQNLAL-NVA-EKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~-~L~-~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.+.++.|||.|++|++++- ++. ++|+++. +||.+++++-..... +.+.-.++++..++. .+.|+.|+|||
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~------v~V~~~d~le~~v~~-~dv~iaiLtVP 155 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD------VPVYDLDDLEKFVKK-NDVEIAILTVP 155 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCC------eeeechHHHHHHHHh-cCccEEEEEcc
Confidence 3468999999999999984 344 6788754 799999865432221 123444566666663 13799999999
Q ss_pred CChhHHHHHHHHHhc
Q 010702 82 AGSPVDQTIAALSEH 96 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~ 96 (503)
.. ...++.+.|...
T Consensus 156 a~-~AQ~vad~Lv~a 169 (211)
T COG2344 156 AE-HAQEVADRLVKA 169 (211)
T ss_pred HH-HHHHHHHHHHHc
Confidence 84 667777776653
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.058 Score=54.72 Aligned_cols=125 Identities=20% Similarity=0.237 Sum_probs=73.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--------CCcE--E-EEeCChhHHHHHHHhhcccCCCCeeeeCCH-----HHHHhc
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK--------GFPI--S-VYNRTTSKVDETLDRAHREGQLPLTGHYTP-----RDFVLS 69 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~--------G~~V--~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~-----~e~~~~ 69 (503)
..+|+|+|+|.+|+++++.|.++ |.++ + +.+|+......+.-... .....++ .+++..
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 76 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNA------EVWTTDGALSLGDEVLLD 76 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccch------hhheecccccccHhhhcc
Confidence 46899999999999999999875 3343 2 45776654431100000 0122233 344432
Q ss_pred cCCCcEEEEecCC-ChhHHHHHHHHHhcCCCCCEEEecCCCChhhH-HHHHHHHHhcCcc-EecccCCCChh
Q 010702 70 IQRPRSVIILVKA-GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEASQKGLL-YLGMGVSGGEE 138 (503)
Q Consensus 70 l~~~dvIil~vp~-~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t-~~~~~~l~~~gi~-~i~~pvsgg~~ 138 (503)
+..|+|+.+++. -...+. ++.+...+..|..||.......... .++.+..++.|.. +.++.|.||-+
T Consensus 77 -~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiP 146 (333)
T COG0460 77 -EDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIP 146 (333)
T ss_pred -ccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence 346899998876 444555 6677777888999886544322111 1344444555654 56777877754
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.034 Score=47.00 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHHH-HHHHHHh
Q 010702 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQ-TIAALSE 95 (503)
Q Consensus 17 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~-vl~~l~~ 95 (503)
-+..|+..|.+.|.+|.+||..-.......... .. ++...+++++.++. +|.||++++.. ..+. -.+++..
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~-~~---~~~~~~~~~~~~~~---~D~vvl~t~h~-~f~~l~~~~~~~ 89 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGK-LE---GVEVCDDLEEALKG---ADAVVLATDHD-EFRELDWEEIAK 89 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCH-HH---CEEEESSHHHHHTT---ESEEEESS--G-GGGCCGHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCC-cc---ceEEecCHHHHhcC---CCEEEEEecCH-HHhccCHHHHHH
Confidence 456789999999999999998866544333110 01 36778899998887 99999999986 4444 3467777
Q ss_pred cCCCCCEEEecCCCC
Q 010702 96 HMSPGDCIIDGGNEW 110 (503)
Q Consensus 96 ~l~~g~iIId~st~~ 110 (503)
.+.++.+|+|+-+..
T Consensus 90 ~~~~~~~iiD~~~~~ 104 (106)
T PF03720_consen 90 LMRKPPVIIDGRNIL 104 (106)
T ss_dssp HSCSSEEEEESSSTS
T ss_pred hcCCCCEEEECcccc
Confidence 778899999997754
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.031 Score=55.67 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=56.8
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||-| .+|.++|..|.++|..|+++.... .++.+.++. +|+||.++....-
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t---------------------~~l~~~~~~---ADIvV~AvG~p~~ 213 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT---------------------KDLSFYTQN---ADIVCVGVGKPDL 213 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc---------------------HHHHHHHHh---CCEEEEecCCCCc
Confidence 579999998 999999999999999999985322 133455555 9999999977543
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 214 IK------ASMVKKGAVVVDIGINR 232 (285)
T ss_pred CC------HHHcCCCcEEEEeeccc
Confidence 22 12468999999998654
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.093 Score=55.72 Aligned_cols=120 Identities=19% Similarity=0.130 Sum_probs=71.2
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHH---HHHhhcccCCCCeeee--CCHHHHHhccCCCcEEEEec-
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDE---TLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIILV- 80 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~---l~~~~~~~g~~~i~~~--~s~~e~~~~l~~~dvIil~v- 80 (503)
||.|||+|..|.++|+.|.+.|++|+++|..+.. ... +.+.. . ++... .+ .+.+.. +|+||.+-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~--~---gi~~~~g~~-~~~~~~---~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLN--E---GSVLHTGLH-LEDLNN---ADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhc--c---CcEEEecCc-hHHhcc---CCEEEECCC
Confidence 5899999999999999999999999999976542 211 22110 0 12222 23 333343 89888763
Q ss_pred -CCCh-hHHHHH---------HHHH-hcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC
Q 010702 81 -KAGS-PVDQTI---------AALS-EHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (503)
Q Consensus 81 -p~~~-~v~~vl---------~~l~-~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg 136 (503)
|.+. .+.... .+++ ..+....|-|..|++...++.-+...|+..|..+.-++-.|.
T Consensus 72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~ 139 (433)
T TIGR01087 72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGT 139 (433)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCH
Confidence 3332 222221 1222 223334566777777776776677788877766544443333
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.026 Score=54.38 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=52.0
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHhhcccCCCCeee-eCCHHHHHhccCCCcEEEEecCC
Q 010702 9 IGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSK--VDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 9 IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~-~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|.|+|+ |.+|+.++..|.+.+++|.+.-|++.+ .+.+.+.+... +.. ..+.+.+.+.|+.+|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~v----v~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEV----VEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEE----EES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceE----eecccCCHHHHHHHHcCCceEEeecCc
Confidence 789995 999999999999999999999998743 55555554321 111 33566777777779999999884
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.015 Score=58.67 Aligned_cols=77 Identities=35% Similarity=0.633 Sum_probs=59.0
Q ss_pred hCCCCHHHHHHHHHHhccCC-cchhHHhhhhhhccccccCCCchh-HHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 212 VGGLSNAELAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGEL-VDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 212 ~g~~~~~~i~~~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~-ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
.| +|++++.++ |+.+. ++|++++...+++..+ +.+. +..+.++ +.+.+|++++|.+.|+|+|+++++
T Consensus 199 ~g-ld~~~~~~~---~~~~~~~~s~~l~~~~~~~~~~----~~~~~~~~~~kd---~~~~~~~~~~A~~~~~~~P~~~~a 267 (301)
T PRK09599 199 FD-LDLAAVAEV---WRRGSVIRSWLLDLTADALAED----PKLDEISGYVED---SGEGRWTVEEAIDLAVPAPVIAAA 267 (301)
T ss_pred CC-CCHHHHHHH---HhCCcHHHHHHHHHHHHHHhcC----CCHHHHHHHHHh---hCcHHHHHHHHHHcCCCHHHHHHH
Confidence 77 999988887 56664 6999999999988643 2222 4444555 345589999999999999999998
Q ss_pred HHHHHHhcch
Q 010702 290 LDCRYLSGLK 299 (503)
Q Consensus 290 v~~r~~s~~~ 299 (503)
+..|+.+...
T Consensus 268 ~~~~~~~~~~ 277 (301)
T PRK09599 268 LFMRFRSRQE 277 (301)
T ss_pred HHHHHHhccC
Confidence 8888887654
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.05 Score=57.67 Aligned_cols=117 Identities=10% Similarity=0.032 Sum_probs=76.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEE-e----------CChhHHHHHHHhh--cccCC---CCeeeeCCHHHHHhcc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVY-N----------RTTSKVDETLDRA--HREGQ---LPLTGHYTPRDFVLSI 70 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~-d----------r~~~~~~~l~~~~--~~~g~---~~i~~~~s~~e~~~~l 70 (503)
++|+|.|.|++|+.+|+.|.+.|.+|+.. | .+.+.+.+..+.. ...+. .+.. ..+.+++...
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~-~i~~~~i~~~- 310 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE-YLEGGSPWSV- 310 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe-ecCCcccccc-
Confidence 58999999999999999999999998866 7 6666554443321 00000 0001 1133333331
Q ss_pred CCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 71 QRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 71 ~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+||+++-|...+....+....+.. .+=++|+...|... +.+..+.|.++|+.++.
T Consensus 311 -d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~--t~~A~~~L~~rGI~~vP 365 (445)
T PRK09414 311 -PCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPS--TPEAIEVFLEAGVLFAP 365 (445)
T ss_pred -CCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 499999998876544555555543 13368888888754 56677888999998774
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.074 Score=53.42 Aligned_cols=106 Identities=14% Similarity=0.213 Sum_probs=77.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchh
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~ 404 (503)
.++++.+|.++|.+.++.+..++|++.+..+. ++|.+++.++++.+ ..+|.+++.....+.+. +.. +
T Consensus 165 ~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------Gi~~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-d~~-----~ 231 (296)
T PRK11559 165 IGAGNVTKLANQVIVALNIAAMSEALVLATKA------GVNPDLVYQAIRGG-LAGSTVLDAKAPMVMDR-NFK-----P 231 (296)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcC-cccCHHHHhhchHhhcC-CCC-----C
Confidence 36788999999999999999999999998743 39999999999976 55677666543322221 111 1
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010702 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (503)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (503)
.|. +.-...+++-++..|-+.|+|+|.+.++...|+...
T Consensus 232 ~f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 270 (296)
T PRK11559 232 GFR--IDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALK 270 (296)
T ss_pred Ccc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 121 222334567888999999999999999998766543
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.098 Score=56.70 Aligned_cols=117 Identities=15% Similarity=0.054 Sum_probs=69.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh--HHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS--KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp 81 (503)
.++|.|+|+|..|.++|+.|.+.|++|+++|.... ..+.+.+.+... .+.......+.+.. +|+||.. +|
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~---~~~~g~~~~~~~~~---~d~vv~sp~I~ 80 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDA---EFVGGPFDPALLDG---VDLVALSPGLS 80 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCc---EEEeCCCchhHhcC---CCEEEECCCCC
Confidence 35799999999999999999999999999997542 233444332100 12222222344444 8998886 44
Q ss_pred CC-----hhHHHH-------------HHHHHhcC-----CCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 82 AG-----SPVDQT-------------IAALSEHM-----SPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 82 ~~-----~~v~~v-------------l~~l~~~l-----~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
.. ..+... +..++..+ .+..|-|..|++.-.++.-+...|...|...
T Consensus 81 ~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~ 150 (498)
T PRK02006 81 PLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKV 150 (498)
T ss_pred CcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCE
Confidence 42 122111 11222111 1235667777777777766777777776543
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.03 Score=56.68 Aligned_cols=82 Identities=12% Similarity=0.224 Sum_probs=54.4
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 5 ALSRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 5 ~~~~IgIIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|+.+|+||| .|..|..|.+.|.++.+ ++.....+..+ .+ .+.++..++ +|++|+|+|.
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--------------~~---~~~~~~~~~---~DvvFlalp~ 60 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--------------DA---AARRELLNA---ADVAILCLPD 60 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--------------cc---cCchhhhcC---CCEEEECCCH
Confidence 467999999 59999999999998863 33322222111 01 122333344 8999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+ ...+...++. ..|..|||.|+..
T Consensus 61 ~-~s~~~~~~~~---~~g~~VIDlSadf 84 (313)
T PRK11863 61 D-AAREAVALID---NPATRVIDASTAH 84 (313)
T ss_pred H-HHHHHHHHHH---hCCCEEEECChhh
Confidence 6 4455555553 3689999999753
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.083 Score=56.01 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=62.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-------CC--cEEEEeCChhHHHHHHHhhcccC--C-CCeeeeCCHHHHHhccCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEK-------GF--PISVYNRTTSKVDETLDRAHREG--Q-LPLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~-------G~--~V~v~dr~~~~~~~l~~~~~~~g--~-~~i~~~~s~~e~~~~l~~~ 73 (503)
-||+|||+ |.+|.++|..|+.. |. ++.++|++.++++...-...... . .++....+..+..++ +
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd---a 177 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD---A 177 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc---C
Confidence 47999999 99999999999988 65 68899999887654332111000 0 023333333333444 9
Q ss_pred cEEEEecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 74 RSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 74 dvIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
|+||++.-. +. .++++...|.++..+..+||..||-
T Consensus 178 DiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNP 228 (444)
T PLN00112 178 EWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNP 228 (444)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence 999998633 11 1334445565644567778878764
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.14 Score=54.50 Aligned_cols=115 Identities=16% Similarity=0.092 Sum_probs=67.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH----HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec--
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK----VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV-- 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~----~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v-- 80 (503)
++|.|+|.|.+|.+.|+.|++.|++|+++|++... .+.+.+.+. .+.......++... .+|+||.+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~-----~~~~~~~~~~~~~~--~~d~vV~s~gi 78 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGI-----KVICGSHPLELLDE--DFDLMVKNPGI 78 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCC-----EEEeCCCCHHHhcC--cCCEEEECCCC
Confidence 57999999999999999999999999999987532 233333221 12211233443321 278887754
Q ss_pred CCChh-HHHHH---------HHHHhcC-CCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 81 KAGSP-VDQTI---------AALSEHM-SPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 81 p~~~~-v~~vl---------~~l~~~l-~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
|.+.. ++... .++...+ ....|-|..|++...++.-+...|+..|...
T Consensus 79 ~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~ 137 (447)
T PRK02472 79 PYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHA 137 (447)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCe
Confidence 33222 22221 1222222 3345666677777666666667777666433
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.028 Score=57.80 Aligned_cols=91 Identities=14% Similarity=0.244 Sum_probs=57.0
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCc---EEEE--eCChhHHHHHHHhhcccCCCCeeeeC-CHHHHHhccCCCcEEE
Q 010702 5 ALSRIGLAGL-AVMGQNLALNVAEKGFP---ISVY--NRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVI 77 (503)
Q Consensus 5 ~~~~IgIIGl-G~mG~~lA~~L~~~G~~---V~v~--dr~~~~~~~l~~~~~~~g~~~i~~~~-s~~e~~~~l~~~dvIi 77 (503)
+.+||+|||+ |..|..|.+.|.+.+|. +... .|+..+.-.. .+ . .+.... +.+++ +. +|+||
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~-~----~~~v~~~~~~~~-~~---~D~vf 74 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EG-R----DYTVEELTEDSF-DG---VDIAL 74 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cC-c----eeEEEeCCHHHH-cC---CCEEE
Confidence 3468999995 99999999999998874 3222 3333322111 11 1 122222 33333 44 99999
Q ss_pred EecCCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+++|.+ ...+....+. ..|..|||.|+.+
T Consensus 75 ~a~p~~-~s~~~~~~~~---~~g~~VIDlS~~f 103 (344)
T PLN02383 75 FSAGGS-ISKKFGPIAV---DKGAVVVDNSSAF 103 (344)
T ss_pred ECCCcH-HHHHHHHHHH---hCCCEEEECCchh
Confidence 999996 4455555443 3689999999754
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.057 Score=53.72 Aligned_cols=109 Identities=13% Similarity=0.108 Sum_probs=71.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.++.|+|+|-.+++++..|++.|. +|+++||++++.+.+.+... ... ..++ . ...+|+||-|+|.+-.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~------~~~---~~~~-~-~~~~dlvINaTp~Gm~ 191 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYG------YEW---RPDL-G-GIEADILVNVTPIGMA 191 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhC------Ccc---hhhc-c-cccCCEEEECCccccC
Confidence 369999999999999999999997 59999999999988876421 111 1111 1 1238999999986521
Q ss_pred --HH--H-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 86 --VD--Q-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 86 --v~--~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
.+ . .++ ...++++.+++|.--.. ..| .+.+..+++|...++
T Consensus 192 ~~~~~~~~pi~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 192 GGPEADKLAFP--EAEIDAASVVFDVVALP-AET-PLIRYARARGKTVIT 237 (272)
T ss_pred CCCccccCCCC--HHHcCCCCEEEEeecCC-ccC-HHHHHHHHCcCeEeC
Confidence 00 0 111 12367788999986543 333 345556666765543
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.045 Score=51.79 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=70.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|||+|.+|+.++++|+..|. +++++|.+.-....+..+.... ...+-..+....+.++.+ .+++-+.+.+..
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~l-Np~v~i~~~~~~ 99 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRAL-NPRVKVSVDTDD 99 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHH-CCCCEEEEEecC
Confidence 3689999999999999999999997 5999987753332222110000 000000111122222222 266666665432
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
+.+...++ +..-++||+++. .+..-..+.+.+.++++-|+.+.+.|
T Consensus 100 --~~~~~~~~---~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 100 --ISEKPEEF---FSQFDVVVATEL-SRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred --ccccHHHH---HhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 22222222 234478888754 34555566777788888888877654
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.054 Score=54.62 Aligned_cols=98 Identities=15% Similarity=0.187 Sum_probs=58.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHH----HhhcccCCCCeeeeC--CHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETL----DRAHREGQLPLTGHY--TPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~----~~~~~~g~~~i~~~~--s~~e~~~~l~~~dvIil 78 (503)
+||+|||+|.+|+++|..|...+. ++.++|++.++.+-.. ...... ........ +.++ ++.+|+|++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~-~~~~~i~~~~~y~~----~~~aDiVvi 75 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPL-GSDVKITGDGDYED----LKGADIVVI 75 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhc-cCceEEecCCChhh----hcCCCEEEE
Confidence 589999999999999999987764 7999999965433221 110000 00122222 2333 334999999
Q ss_pred ec--C--CCh-----------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 79 LV--K--AGS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 79 ~v--p--~~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. | ++. .++++..++.... ++.+++-.||-.
T Consensus 76 tAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNPv 121 (313)
T COG0039 76 TAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNPV 121 (313)
T ss_pred eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCcH
Confidence 87 2 221 2334445566655 466777777643
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.054 Score=48.27 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=51.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|+|- ...|.++|..|.+.|.+|++++++. .++++.+++ +|+|+.++.....
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------------------~~l~~~v~~---ADIVvsAtg~~~~ 84 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------------------IQLQSKVHD---ADVVVVGSPKPEK 84 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCCCCc
Confidence 45777763 6667777777777777777766432 155666666 9999999987532
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++ ..++++|.+|+|.+...
T Consensus 85 i~------~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 85 VP------TEWIKPGATVINCSPTK 103 (140)
T ss_pred cC------HHHcCCCCEEEEcCCCc
Confidence 22 23578999999988765
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.13 Score=55.42 Aligned_cols=112 Identities=16% Similarity=0.096 Sum_probs=65.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HH----HHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec-
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KV----DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV- 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~----~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v- 80 (503)
++|.|||.|..|..+|..|++.|++|+++|+++. .. +.+.+.+. .+....... .. ..+|+||++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv-----~~~~~~~~~-~~---~~~D~Vv~s~G 87 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGA-----TVRLGPGPT-LP---EDTDLVVTSPG 87 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCC-----EEEECCCcc-cc---CCCCEEEECCC
Confidence 4799999999999999999999999999996653 22 22333221 121112222 22 2389999875
Q ss_pred --CCChhHHHHH---------HHHH-hcCCC----CCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 81 --KAGSPVDQTI---------AALS-EHMSP----GDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 81 --p~~~~v~~vl---------~~l~-~~l~~----g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
|+...+...- -+++ ..+.+ ..|-|..|++...++.-+...++..|..
T Consensus 88 i~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~ 150 (480)
T PRK01438 88 WRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLR 150 (480)
T ss_pred cCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCC
Confidence 2222222111 1222 22222 2466677777766666666777766544
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.037 Score=55.10 Aligned_cols=73 Identities=15% Similarity=0.254 Sum_probs=56.4
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|||-+. +|.++|..|...|..|++++... .++.+...+ +|+||.++.-+..
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T---------------------~~l~~~~~~---ADIvv~AvG~p~~ 220 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT---------------------DDLKKYTLD---ADILVVATGVKHL 220 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC---------------------CCHHHHHhh---CCEEEEccCCccc
Confidence 5799999888 99999999999999999998421 245555665 9999998865432
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+. ...+++|.+|||.+..
T Consensus 221 i~------~~~vk~gavVIDvGin 238 (287)
T PRK14176 221 IK------ADMVKEGAVIFDVGIT 238 (287)
T ss_pred cC------HHHcCCCcEEEEeccc
Confidence 22 1257899999999875
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.032 Score=52.20 Aligned_cols=89 Identities=19% Similarity=0.123 Sum_probs=60.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee--CC----HHHHHhccCCCcEEEEe
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH--YT----PRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~--~s----~~e~~~~l~~~dvIil~ 79 (503)
++|.|||- ..+|.+||..|.++|..|+++|.+.-.. +...+.. +-..+ .+ +.+.+.+ +|+||.+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~----~hs~t~~~~~~~~l~~~~~~---ADIVIsA 133 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESI----RHEKHHVTDEEAMTLDCLSQ---SDVVITG 133 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--ccccccc----ccccccccchhhHHHHHhhh---CCEEEEc
Confidence 57999995 6789999999999999999998654322 1111000 00011 12 4555555 9999999
Q ss_pred cCCChh-HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 VKAGSP-VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 vp~~~~-v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++.... +. ...+++|.+|||.+...
T Consensus 134 vG~~~~~i~------~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 134 VPSPNYKVP------TELLKDGAICINFASIK 159 (197)
T ss_pred cCCCCCccC------HHHcCCCcEEEEcCCCc
Confidence 987643 22 13477999999998764
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.15 Score=54.53 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=67.3
Q ss_pred cEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeC-CHHHHHhccCCCcEEEEec--CC
Q 010702 8 RIGLAGLAVMGQN-LALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILV--KA 82 (503)
Q Consensus 8 ~IgIIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~-s~~e~~~~l~~~dvIil~v--p~ 82 (503)
+|-|||.|..|.+ +|+.|++.|++|+++|.+... .+.+.+.+ +.... ...+.+. .+|+||.+- |.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~g-------i~~~~g~~~~~~~---~~d~vV~spgi~~ 70 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALG-------IPIYIGHSAENLD---DADVVVVSAAIKD 70 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCc-------CEEeCCCCHHHCC---CCCEEEECCCCCC
Confidence 4789999999998 999999999999999976542 23343322 33322 1122333 389888753 33
Q ss_pred C-hhHHHHH---------HHHH-hcC-CCCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 83 G-SPVDQTI---------AALS-EHM-SPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 83 ~-~~v~~vl---------~~l~-~~l-~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
+ ..+.... -+++ ..+ ....|-|..|++...++.-+...++..|.
T Consensus 71 ~~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 71 DNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred CCHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 2 2233221 1232 222 23356777788887777777777887774
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.066 Score=54.62 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=58.2
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--hHHHHHHHhhccc--CCC-CeeeeCCHHHHHhccCCCc
Q 010702 8 RIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTT--SKVDETLDRAHRE--GQL-PLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 8 ~IgIIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~~~~~~~--g~~-~i~~~~s~~e~~~~l~~~d 74 (503)
||+|||+ |.+|..+|..|+..|. ++.++|+++ +..+.....-... ... ......+..+.+++ +|
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~---aD 78 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD---VD 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC---CC
Confidence 7999999 9999999999998663 499999987 4322111000000 000 12222344444554 99
Q ss_pred EEEEecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 75 SVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 75 vIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+||++.-. +. .++++...+.++..++.++|-.||-
T Consensus 79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 128 (323)
T cd00704 79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNP 128 (323)
T ss_pred EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 99988632 11 1344445666664456666667653
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.055 Score=53.98 Aligned_cols=125 Identities=19% Similarity=0.206 Sum_probs=70.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|||+|-+|+.+|.+|+..|. ++.++|.+.=....+..+-.. ....+-.-+....+.+.++. +++=|.+.+..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iN-P~v~V~~~~~~ 105 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDIN-PELEIRAFPEG 105 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 3589999999999999999999997 688998875444333322100 00000011122223333221 44444444432
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCC-hhhHHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~-~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
- ..+-+.++ +..-|+|||++... ...-..+.+.+...++-++.+.+.|
T Consensus 106 l-~~~n~~~l---l~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 106 I-GKENADAF---LDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred c-CccCHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 1 12222333 33458999987653 2333445566777888888775554
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.082 Score=50.66 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=35.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 47 (503)
.++|-|+|. |.+|..+++.|+++|++|.+.+|++++.+++.+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAA 48 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHH
Confidence 356888884 999999999999999999999999887665543
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.082 Score=54.04 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=58.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCC-------CcEEEEeCChh--HHHHH----HHhh-cccCCCCeeeeCCHHHHHhccC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKG-------FPISVYNRTTS--KVDET----LDRA-HREGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G-------~~V~v~dr~~~--~~~~l----~~~~-~~~g~~~i~~~~s~~e~~~~l~ 71 (503)
.||+|+|+ |.+|..++..|+..+ .+|.++|+++. +.+.. .... ...+ ++....++.+.+++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~--~~~~~~~~~~~l~~-- 78 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLK--SVVATTDPEEAFKD-- 78 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccC--CceecCCHHHHhCC--
Confidence 47999999 999999999999854 48999999653 12111 1000 0000 12233454444454
Q ss_pred CCcEEEEecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCC
Q 010702 72 RPRSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 72 ~~dvIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st 108 (503)
+|+||++.-. +. .++++...+.++..++.++|-.||
T Consensus 79 -aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 79 -VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred -CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 9999988522 11 123344566666556777777776
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.048 Score=53.25 Aligned_cols=123 Identities=14% Similarity=0.167 Sum_probs=71.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|.|+|+|.+|+.+|.+|++.|. +++++|.+.-....+..+.... ...+-.-+....+.+.++ .+++-+..++..-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~i-np~v~i~~~~~~i 103 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQI-NPHIAINPINAKL 103 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHH-CCCcEEEEEeccC
Confidence 589999999999999999999996 6889998865444333221000 000000011112222221 2566666665421
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
. .+.+. ..+..-++|||++-. +.....+.+.+.+.++-|+.+.+.|
T Consensus 104 ~-~~~~~---~~~~~~DlVvd~~D~-~~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 104 D-DAELA---ALIAEHDIVVDCTDN-VEVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred C-HHHHH---HHhhcCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 1 12222 334566899998765 3444445666777788888765554
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.043 Score=54.47 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=57.0
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||-+ .+|.++|..|.++|..|+++.... .++.+.++. +|+||.++....-
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T---------------------~~l~~~~~~---ADIvV~AvGkp~~ 213 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFT---------------------KDLKAHTKK---ADIVIVGVGKPNL 213 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCcccc
Confidence 579999987 999999999999999999885321 245556666 9999999976542
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 214 IT------EDMVKEGAIVIDIGINR 232 (281)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 22 13578999999998754
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.076 Score=51.67 Aligned_cols=84 Identities=14% Similarity=0.291 Sum_probs=56.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEE--EEecCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV--IILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvI--il~vp~~ 83 (503)
++|-|.|. |.+|..++..|+++|++|.+.+|+++..+++.+.... . . +++. ..-+.+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~--~---~~~~~~~~Dl~~~ 68 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK--------------A--G---GKAIGVAMDVTNE 68 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh--------------c--C---ceEEEEECCCCCH
Confidence 45778876 9999999999999999999999998776665543110 0 0 2222 2223344
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++++++++.....+-++||++...
T Consensus 69 ~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 69 DAVNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 45666666666555556788887654
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.048 Score=52.76 Aligned_cols=124 Identities=12% Similarity=0.123 Sum_probs=69.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|||+|.+|+.+|.+|+..|. +++++|.+.=....+..+.... ...+-..+....+.+..+ .+++-+...+..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~i~~~~~~ 99 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAI-NPDVEIEAYNER 99 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHh-CCCCEEEEecce
Confidence 3589999999999999999999997 6889987754333332211000 000000111122222221 145555555443
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
- ..+-+.++ +..-++||++.-. +..-..+.+.+.+.++-|+.+++.|
T Consensus 100 i-~~~~~~~~---~~~~DvVi~~~d~-~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 100 L-DAENAEEL---IAGYDLVLDCTDN-FATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred e-CHHHHHHH---HhCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 1 12222223 3445889988653 4444445666777788888877655
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.21 Score=49.07 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=71.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEe----------CChhHHHHHHHhhcccCC--------C-CeeeeCCHHHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYN----------RTTSKVDETLDRAHREGQ--------L-PLTGHYTPRDF 66 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~-v~d----------r~~~~~~~l~~~~~~~g~--------~-~i~~~~s~~e~ 66 (503)
.+|.|.|.|++|+..|+.|.+.|.+|+ +.| .+.+.+..+.+.....+. . +.+. -+.+++
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~-~~~~~~ 117 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKY-FEGKKP 117 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEE-eCCcch
Confidence 589999999999999999999999987 556 223333332211100000 0 0122 244455
Q ss_pred HhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 67 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
... +||+++-|--.+.-..+.+..|.. .+=++|+...|... +.+..+.|.++|+.|+.
T Consensus 118 ~~~--~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~--t~~a~~~L~~rGI~vvP 175 (254)
T cd05313 118 WEV--PCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPC--TAEAIEVFRQAGVLFAP 175 (254)
T ss_pred hcC--CCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 442 489988886554333333344432 13368888888764 33677789999998874
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.16 Score=48.63 Aligned_cols=42 Identities=10% Similarity=0.240 Sum_probs=36.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 48 (503)
||+-|.|. |.+|..+++.|++.|++|.+.+|++++.+++.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~ 43 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKE 43 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence 36888875 9999999999999999999999999887766543
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.06 Score=55.60 Aligned_cols=97 Identities=9% Similarity=0.181 Sum_probs=59.4
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHh-hcc------cCC-CCeee-eCCHHHHHhccCCCc
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDR-AHR------EGQ-LPLTG-HYTPRDFVLSIQRPR 74 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-~~~------~g~-~~i~~-~~s~~e~~~~l~~~d 74 (503)
++||+|+| .|.+|..+.+.|.++.. ++..+.+++....+.... ... .+. ..+.. ..+++++ .+ +|
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~---~D 78 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-DD---VD 78 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-cC---CC
Confidence 47999998 89999999999998764 777775665432211110 000 000 01112 1244443 44 99
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+|+.++|.+ ...+..+.+. ..|..+||.|...
T Consensus 79 vVf~a~p~~-~s~~~~~~~~---~~G~~vIDls~~f 110 (349)
T PRK08664 79 IVFSALPSD-VAGEVEEEFA---KAGKPVFSNASAH 110 (349)
T ss_pred EEEEeCChh-HHHHHHHHHH---HCCCEEEECCchh
Confidence 999999996 4444544443 3678899998754
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.13 Score=50.43 Aligned_cols=88 Identities=10% Similarity=0.129 Sum_probs=56.0
Q ss_pred CCcCCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 1 MEASALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 1 M~~~~~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|.+-..+++-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.+... .. ..++..=
T Consensus 1 m~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D 60 (261)
T PRK08265 1 MIGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLG-----------------ER---ARFIATD 60 (261)
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Ce---eEEEEec
Confidence 54433356777775 999999999999999999999999877665543210 00 2222223
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
+.+...++.+++.+.....+=+++|++..
T Consensus 61 l~~~~~~~~~~~~~~~~~g~id~lv~~ag 89 (261)
T PRK08265 61 ITDDAAIERAVATVVARFGRVDILVNLAC 89 (261)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 34444566666666554444467776654
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.21 Score=52.35 Aligned_cols=113 Identities=12% Similarity=0.158 Sum_probs=69.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~~~ 84 (503)
..|-|+|.|.+|..+++.|.+.|++|.+.+.+. .++..+.+.. -+.+..+-++..+ .+++++.|+++.+++.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~----vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~ 314 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDAD----LIPGDSSDSAVLKKAGAARARAILALRDNDA 314 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhhhccCCCc----EEEeCCCCHHHHHhcCcccCCEEEEcCCChH
Confidence 358899999999999999999999999998763 2333322211 1333334444443 4567999998888764
Q ss_pred hHHHHHHHHHhcCCC-CCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 85 PVDQTIAALSEHMSP-GDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~-g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
....++..... +.+ ..+|+-..+. +..+.++..|+..+=.|
T Consensus 315 ~Nl~ivL~ar~-l~p~~kIIa~v~~~------~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 315 DNAFVVLAAKE-MSSDVKTVAAVNDS------KNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHHHHHHHHH-hCCCCcEEEEECCH------HHHHHHHhcCCCEEECH
Confidence 43333333333 334 4566655442 23445566677665444
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.26 Score=52.51 Aligned_cols=114 Identities=14% Similarity=0.036 Sum_probs=68.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHhhcccCCCCeeee--CCHHHHHhccCCCcEEEEec--
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK--VDETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIILV-- 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~~--~s~~e~~~~l~~~dvIil~v-- 80 (503)
++|.|+|.|..|.+.|+.|++.|++|+++|.++.. .+++.+.. . ++... ...++.... +|+||.+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~--~---gi~~~~g~~~~~~~~~---~d~vv~spgi 77 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMF--D---GLVFYTGRLKDALDNG---FDILALSPGI 77 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhcc--C---CcEEEeCCCCHHHHhC---CCEEEECCCC
Confidence 57999999999999999999999999999976543 33333210 0 12221 212333334 89998864
Q ss_pred CCC-hhHHHHH---------HHHH-hcCC---CCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 81 KAG-SPVDQTI---------AALS-EHMS---PGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 81 p~~-~~v~~vl---------~~l~-~~l~---~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
|++ ..+.... -+++ ..+. ...|-|..|++...++.-+...|...|...
T Consensus 78 ~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~ 139 (445)
T PRK04308 78 SERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDT 139 (445)
T ss_pred CCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCe
Confidence 322 2232221 1222 2221 235667777777766766777777777653
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.16 Score=52.91 Aligned_cols=100 Identities=13% Similarity=0.161 Sum_probs=60.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-c----EE--EE--eCChhHHHHHHHhhccc--CCC-CeeeeCCHHHHHhccCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF-P----IS--VY--NRTTSKVDETLDRAHRE--GQL-PLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~-~----V~--v~--dr~~~~~~~l~~~~~~~--g~~-~i~~~~s~~e~~~~l~~~ 73 (503)
-||+|||+ |.+|.++|..|+..|. + |. ++ |++.++++...-.-... ..+ ++....+..+.+++ +
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kd---a 121 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFED---A 121 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCC---C
Confidence 48999999 9999999999998774 2 33 44 88887755433211000 000 23333333333444 9
Q ss_pred cEEEEecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 74 RSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 74 dvIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
|+||++.-. +. .++++...+.++..+..+||..||-
T Consensus 122 DIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNP 172 (387)
T TIGR01757 122 DWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNP 172 (387)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 999997532 11 1344445666666577788888764
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.061 Score=53.60 Aligned_cols=74 Identities=15% Similarity=0.254 Sum_probs=57.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|+++.... .++++...+ +|+||.++....-
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------------------~~l~~~~~~---ADIvIsAvGkp~~ 211 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------------------QDLPAVTRR---ADVLVVAVGRPHL 211 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEecCCcCc
Confidence 57999995 7899999999999999999886331 245666666 9999999977543
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 212 i~------~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 212 IT------PEMVRPGAVVVDVGINR 230 (287)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 22 23578999999998764
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.089 Score=48.99 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=46.3
Q ss_pred cEEEEcccHHHHHHH--HHHHhC----CCcEEEEeCChhHHHHHH---Hhhcc-cC-CCCeeeeCCHHHHHhccCCCcEE
Q 010702 8 RIGLAGLAVMGQNLA--LNVAEK----GFPISVYNRTTSKVDETL---DRAHR-EG-QLPLTGHYTPRDFVLSIQRPRSV 76 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA--~~L~~~----G~~V~v~dr~~~~~~~l~---~~~~~-~g-~~~i~~~~s~~e~~~~l~~~dvI 76 (503)
||+|||.|..-.+.- ..+... +-++.++|+|+++++... +.... .+ .+++..+++.+++++. +|+|
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~g---ADfV 77 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEG---ADFV 77 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTT---ESEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCC---CCEE
Confidence 699999998776632 233322 237899999999876432 21111 00 2367888999999988 9999
Q ss_pred EEecCCC
Q 010702 77 IILVKAG 83 (503)
Q Consensus 77 il~vp~~ 83 (503)
|.++..+
T Consensus 78 i~~irvG 84 (183)
T PF02056_consen 78 INQIRVG 84 (183)
T ss_dssp EE---TT
T ss_pred EEEeeec
Confidence 9998554
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.12 Score=52.26 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=57.8
Q ss_pred EEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhccc---CCCCeeeeCCHHHHHhccCCCcEEEEecCCC--
Q 010702 11 LAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE---GQLPLTGHYTPRDFVLSIQRPRSVIILVKAG-- 83 (503)
Q Consensus 11 IIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~---g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~-- 83 (503)
|||+|.+|.++|..|+..+. ++.++|++.++++......... -..+.+...+..+..++ +|+||++.-.+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d---aDivVitag~~rk 77 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD---ADLVVITAGAPQK 77 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC---CCEEEECCCCCCC
Confidence 69999999999999998886 6999999887654333211100 00022333232333343 99999976331
Q ss_pred --h-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 --S-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 --~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
. .++++.+.+..+ .+..+||..||-
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 115 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNP 115 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 1 134444566665 466778777764
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.064 Score=53.75 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=57.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|+++... +.++++.+.+ +|+||.++.-+.-
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------------------TQDLASITRE---ADILVAAAGRPNL 214 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 57999995 789999999999999999998532 1355666666 9999999986542
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 215 IG------AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 22 13578999999998764
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.12 Score=49.95 Aligned_cols=87 Identities=13% Similarity=0.086 Sum_probs=56.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.++|-|.|. |.+|..+++.|+++|++|.+.+|+++..+.+.+..... -.. ...+..-+.+..
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~ 68 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--------------GGT---AIAVQVDVSDPD 68 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEcCCCCHH
Confidence 356888886 99999999999999999999999987655544321000 000 122223334445
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++.+.....+=++||++...
T Consensus 69 ~~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 69 SAKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 5666666666555555788887764
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.068 Score=53.15 Aligned_cols=74 Identities=14% Similarity=0.234 Sum_probs=57.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|+++... +.++++.+.+ +|+||.++....-
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~---------------------T~~l~~~~~~---ADIvI~AvG~~~~ 213 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---------------------TKDLPQVAKE---ADILVVATGLAKF 213 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 57999995 678999999999999999998532 1355666666 9999999987643
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 214 VK------KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 22 13478999999998764
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.071 Score=54.88 Aligned_cols=97 Identities=11% Similarity=0.097 Sum_probs=55.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCC-CcEEEE-eCChhHHHHHHHhhc------ccCCC-CeeeeCCHHHHHhccCCCcEE
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKG-FPISVY-NRTTSKVDETLDRAH------REGQL-PLTGHYTPRDFVLSIQRPRSV 76 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G-~~V~v~-dr~~~~~~~l~~~~~------~~g~~-~i~~~~s~~e~~~~l~~~dvI 76 (503)
+||+|+|+ |.||..+++.|.++. ++|... +++...-+.+.+... ..+.+ .+.......+... ++|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASK---DVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhc---cCCEE
Confidence 48999995 999999999998877 576655 554332122211100 00000 0111111122223 49999
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++++|.+ ...++...+. ..|..|||.|...
T Consensus 78 f~a~p~~-~s~~~~~~~~---~~G~~VIDlsg~f 107 (341)
T TIGR00978 78 FSALPSE-VAEEVEPKLA---EAGKPVFSNASNH 107 (341)
T ss_pred EEeCCHH-HHHHHHHHHH---HCCCEEEECChhh
Confidence 9999986 3444444443 3688899998763
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.13 Score=56.25 Aligned_cols=113 Identities=20% Similarity=0.201 Sum_probs=70.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh-
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~- 85 (503)
+++-|+|.|-+|++++..|++.|.+|+++||+.++.+.+.+.... ......+..+... ..+|+|+-++|.+-.
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~----~~~~~~~~~~~~~--~~~diiINtT~vGm~~ 453 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGG----QALTLADLENFHP--EEGMILANTTSVGMQP 453 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC----ceeeHhHhhhhcc--ccCeEEEecccCCCCC
Confidence 468899999999999999999999999999999998888754211 1111222222111 126788877776521
Q ss_pred -HHH-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 86 -VDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 86 -v~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
.+. -+. ...+++..+++|..-... .| .+.+..+++|...+
T Consensus 454 ~~~~~pl~--~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~ 495 (529)
T PLN02520 454 NVDETPIS--KHALKHYSLVFDAVYTPK-IT-RLLREAEESGAIIV 495 (529)
T ss_pred CCCCCccc--HhhCCCCCEEEEeccCCC-cC-HHHHHHHHCCCeEe
Confidence 010 111 123667889999865443 33 34445556665443
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.071 Score=53.06 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=57.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|++++... .++++...+ +|+||.++.-..-
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~~l~~~~~~---ADIvIsAvGk~~~ 215 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT---------------------QNLPSIVRQ---ADIIVGAVGKPEF 215 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEeCCCcCc
Confidence 57999995 7899999999999999999997331 245556666 9999999977543
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ...+++|.+|||.+...
T Consensus 216 i~------~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 216 IK------ADWISEGAVLLDAGYNP 234 (284)
T ss_pred cC------HHHcCCCCEEEEecCcc
Confidence 22 23578999999998754
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.075 Score=52.79 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=31.7
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHH
Q 010702 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKV 42 (503)
Q Consensus 8 ~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~ 42 (503)
+|.|+|. |.+|+.++..|.+.|++|.+..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence 4789986 9999999999999999999999998754
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.14 Score=49.58 Aligned_cols=82 Identities=13% Similarity=0.214 Sum_probs=54.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+|-|+|. |.+|..+|..|++.|++|.+.+|++++.+.+..... .. ..++-.-+.+...
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dl~~~~~ 60 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG-----------------DN---LYIAQLDVRNRAA 60 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----------------cc---eEEEEecCCCHHH
Confidence 46889984 999999999999999999999999887665543210 01 2223233444455
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
++++++++.....+=+++|.+..
T Consensus 61 i~~~~~~~~~~~~~id~vi~~ag 83 (248)
T PRK10538 61 IEEMLASLPAEWRNIDVLVNNAG 83 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666555544567776654
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.066 Score=53.11 Aligned_cols=74 Identities=12% Similarity=0.249 Sum_probs=57.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|||- ..+|.++|..|.++|..|++++.. +.++.+.+.+ +|+||.++.-..-
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---------------------TKNLKEVCKK---ADILVVAIGRPKF 214 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999995 789999999999999999999742 1255666666 9999999987643
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (278)
T PRK14172 215 ID------EEYVKEGAIVIDVGTSS 233 (278)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 22 13478999999997654
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.054 Score=55.31 Aligned_cols=35 Identities=14% Similarity=0.336 Sum_probs=31.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTS 40 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~ 40 (503)
.++|-|||+|.||.-.+++|.++|. +|++.||+..
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 3589999999999999999999996 5999999975
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.23 Score=49.59 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=80.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHH-HHHhcCCCCCCCcch
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIK-KAYQRNPNLASLVVD 403 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~-~~~~~~~~~~~ll~~ 403 (503)
.+.|+.+|+++|=+-.+.++.++|++.+-+++ ++|.+.+.++-++| --+|+.++.-. ..++++. +
T Consensus 164 ~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~------Gld~~~~~~vi~~~-~~~s~~~e~~~~~m~~~~~-------~ 229 (286)
T COG2084 164 VGAGQAAKLANNILLAGNIAALAEALALAEKA------GLDPDVVLEVISGG-AAGSWILENYGPRMLEGDF-------S 229 (286)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcc-ccCChHHHhhcchhhcCCC-------C
Confidence 37899999999999999999999999998854 39999999999887 34788777632 2222221 1
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010702 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (503)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (503)
+-| .++-...+++-+...|.+.|+|+|..+.+.+.|+...
T Consensus 230 p~F--~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~ 269 (286)
T COG2084 230 PGF--AVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAA 269 (286)
T ss_pred cch--hHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 233 2234456678888999999999999999999777544
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.071 Score=53.00 Aligned_cols=74 Identities=15% Similarity=0.292 Sum_probs=56.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|+++... +.++++...+ +|+||.++.-+.-
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~---------------------T~~l~~~~~~---ADIvI~AvG~p~~ 212 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK---------------------TRNLKQLTKE---ADILVVAVGVPHF 212 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 57999995 789999999999999999998532 1245555666 9999999987643
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 213 i~------~~~vk~GavVIDvGin~ 231 (282)
T PRK14169 213 IG------ADAVKPGAVVIDVGISR 231 (282)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 22 13578999999998754
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.12 Score=50.65 Aligned_cols=123 Identities=14% Similarity=0.161 Sum_probs=68.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|||+|.+|+.++.+|+..|. +++++|.+.-....+..+... ....+-..+....+.+..+ .+++-+.+.+..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~l-np~v~i~~~~~~ 110 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARI-NPHIAIETINAR 110 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3589999999999999999999997 788998875444333322100 0000001111122222221 155556665542
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (503)
-. .+-+.+ .+..-++|||++-. +..-..+.+.+.+.++-|+.+.+.
T Consensus 111 i~-~~~~~~---~~~~~DiVi~~~D~-~~~r~~ln~~~~~~~ip~v~~~~~ 156 (245)
T PRK05690 111 LD-DDELAA---LIAGHDLVLDCTDN-VATRNQLNRACFAAKKPLVSGAAI 156 (245)
T ss_pred CC-HHHHHH---HHhcCCEEEecCCC-HHHHHHHHHHHHHhCCEEEEeeec
Confidence 11 222222 34456899998754 333334555666778877776544
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.07 Score=52.99 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=56.3
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||-+ ..|.++|..|...|.+|+++.++.. ++.+.+.. +|+||.+++-..-
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~---------------------~L~~~~~~---ADIvI~Avgk~~l 208 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE---------------------NLKAELRQ---ADILVSAAGKAGF 208 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChh---------------------HHHHHHhh---CCEEEECCCcccc
Confidence 579999998 9999999999999999999986532 34444555 9999999975422
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. .+ .+++|.+|||.+...
T Consensus 209 v~---~~---~vk~GavVIDVgi~~ 227 (279)
T PRK14178 209 IT---PD---MVKPGATVIDVGINQ 227 (279)
T ss_pred cC---HH---HcCCCcEEEEeeccc
Confidence 21 22 258999999998653
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.12 Score=51.03 Aligned_cols=87 Identities=15% Similarity=0.220 Sum_probs=59.0
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 5 ~~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+++++-|-|+ +-+|..+|+.|+++||+|.+..|+.++++++.++-... .. ++ ++++-+=+.+.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~--------~~----v~----v~vi~~DLs~~ 68 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK--------TG----VE----VEVIPADLSDP 68 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh--------hC----ce----EEEEECcCCCh
Confidence 4456777786 99999999999999999999999999999888653211 00 01 33333334444
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGG 107 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~s 107 (503)
..+..+.+++.....+=+++|++.
T Consensus 69 ~~~~~l~~~l~~~~~~IdvLVNNA 92 (265)
T COG0300 69 EALERLEDELKERGGPIDVLVNNA 92 (265)
T ss_pred hHHHHHHHHHHhcCCcccEEEECC
Confidence 566667777766533446677653
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.14 Score=49.40 Aligned_cols=86 Identities=13% Similarity=0.129 Sum_probs=55.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|+|. |.+|..+|..|++.|++|.+.+|++++.+.+.+... ..-.. .+++..=+.+...
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--------------~~~~~---~~~~~~Dl~~~~~ 70 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALE--------------AAGGR---AHAIAADLADPAS 70 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--------------hcCCc---EEEEEccCCCHHH
Confidence 56888885 999999999999999999999999887665543210 00001 2222222334445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++.....+-++||++...
T Consensus 71 ~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 71 VQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 566666665544455777777654
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.25 Score=52.89 Aligned_cols=115 Identities=17% Similarity=0.087 Sum_probs=64.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HH----HHHHhhcccCCCCeeeeCCHH--HHHhccCCCcEEEEec
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VD----ETLDRAHREGQLPLTGHYTPR--DFVLSIQRPRSVIILV 80 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~----~l~~~~~~~g~~~i~~~~s~~--e~~~~l~~~dvIil~v 80 (503)
||.|||+|..|.+.|+.|++.|++|.++|+++.. .. .+.+.+. .+..-.... .+-..++++|.|+.+-
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi-----~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGI-----TVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCC-----EEEECCccchhhhhHHhhcCCEEEECC
Confidence 6999999999999999999999999999976532 22 2333221 121111111 1111123389888753
Q ss_pred --CCCh-hHHHHHH---------HH-HhcCCC-CCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 81 --KAGS-PVDQTIA---------AL-SEHMSP-GDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 81 --p~~~-~v~~vl~---------~l-~~~l~~-g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
|.+. .+....+ ++ .....+ ..|-|..|++...++.-+...+...|..
T Consensus 77 gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~ 137 (459)
T PRK02705 77 GIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAGLN 137 (459)
T ss_pred CCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCC
Confidence 2221 2221111 11 122222 3456667777766666666777776654
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.3 Score=45.91 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=91.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCC---------------Ce---eeeCCHHHH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQL---------------PL---TGHYTPRDF 66 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~---------------~i---~~~~s~~e~ 66 (503)
|.+|-|+|+|..+-.+|..|.+.+. +|-+.+|...+-+.+.+.-...+.+ .. ....+.+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i 80 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEI 80 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHh
Confidence 3589999999999999999998875 6999999887777665432221000 00 112334444
Q ss_pred HhccCCCcEEEEecCCChhHHHHHHHHHhc-CCCCCEEEecCCCChhhHHHHHHHHHhcC--ccEe------c-ccCCCC
Q 010702 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKG--LLYL------G-MGVSGG 136 (503)
Q Consensus 67 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~-l~~g~iIId~st~~~~~t~~~~~~l~~~g--i~~i------~-~pvsgg 136 (503)
..+ =|.+|+|||.+ +-.+|+++|-+. |..=+.||-.|... +...-+...+.+.+ +.++ + .-.+.+
T Consensus 81 ~g~---WdtlILavtaD-AY~~VL~ql~~~~L~~vk~iVLvSPtf-GS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~ 155 (429)
T PF10100_consen 81 EGE---WDTLILAVTAD-AYLDVLQQLPWEVLKRVKSIVLVSPTF-GSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDG 155 (429)
T ss_pred ccc---ccEEEEEechH-HHHHHHHhcCHHHHhhCCEEEEECccc-chHHHHHHHHHhcCCCceEEEeecccccceeccC
Confidence 444 69999999996 667788666432 33334455455443 23333444444443 2222 2 223333
Q ss_pred hhhh---hcCC--cccCC---CCHHHHHHHHHHHHHHhccc
Q 010702 137 EEGA---RHGP--SLMPG---GSFEAYNNIRDILQKVAAQV 169 (503)
Q Consensus 137 ~~~a---~~G~--~i~~g---g~~~a~~~v~~ll~~ig~~~ 169 (503)
.... ..|. .+.+| ++....+++..+|+.++.+.
T Consensus 156 ~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~ 196 (429)
T PF10100_consen 156 EQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQL 196 (429)
T ss_pred CCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeE
Confidence 2211 1111 33444 24456678888998888653
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.13 Score=52.64 Aligned_cols=40 Identities=13% Similarity=0.382 Sum_probs=33.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChhHHHHH
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEK-GFPISVYNRTTSKVDET 45 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l 45 (503)
||+|.|.|. |.+|+.++..|+++ |++|.+.+|+..+...+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence 368999996 99999999999986 79999999987654444
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.17 Score=52.90 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=68.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|||+|..|+.++.+|+..|. +++++|++.-....+..+... ....+...+....+.+..+ .+++-+...+..
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~~~~~~ 213 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAAL-NPDVQVEAVQER 213 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3589999999999999999999998 699999884333222221100 0000000111112222211 144444444432
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
. ..+.+.++ +..-++|||++-.. ..-..+.+.+.+.++-|+.+.+.|
T Consensus 214 ~-~~~~~~~~---~~~~D~Vv~~~d~~-~~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 214 V-TSDNVEAL---LQDVDVVVDGADNF-PTRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred C-ChHHHHHH---HhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 1 12223333 33558999987654 222335566777888888876654
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.13 Score=52.44 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=29.7
Q ss_pred EEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHH
Q 010702 9 IGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLD 47 (503)
Q Consensus 9 IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~ 47 (503)
|||+|+|.+|+.+++.+.+. +.+|. +.|.+++....+..
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~ 41 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAK 41 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHH
Confidence 69999999999999998754 45654 56877776555554
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.03 Score=58.39 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=35.3
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|...+.++|.|||.|..|..+|..|+++|++|+++++.+.
T Consensus 1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 1 MTHMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4444557899999999999999999999999999998864
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.06 Score=52.53 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=35.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHH
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDET 45 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 45 (503)
+++|.|+|. |.+|+.++..|+++|++|++..|++++....
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 468999995 9999999999999999999999998876544
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.079 Score=52.70 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=56.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|+++.... .++.+..++ +|+||.++.-+.-
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------------------~dl~~~~k~---ADIvIsAvGkp~~ 214 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------------------TDLKSHTTK---ADILIVAVGKPNF 214 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------------------CCHHHHhhh---cCEEEEccCCcCc
Confidence 57999995 7899999999999999999986431 244555555 9999999987643
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~vk~gavVIDvGin~ 233 (282)
T PRK14180 215 ITA------DMVKEGAVVIDVGINH 233 (282)
T ss_pred CCH------HHcCCCcEEEEecccc
Confidence 221 3478999999998653
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.082 Score=52.59 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=56.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|+++.... .++++...+ +|+||.++.-+.-
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 213 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLSLYTRQ---ADLIIVAAGCVNL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999995 7799999999999999999887432 245555666 9999999987643
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (282)
T PRK14166 214 LR------SDMVKEGVIVVDVGINR 232 (282)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 22 13478999999998654
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.17 Score=49.06 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=34.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 46 (503)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN 43 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH
Confidence 46889997 99999999999999999999999987765543
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.047 Score=56.11 Aligned_cols=89 Identities=15% Similarity=0.209 Sum_probs=55.6
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcE---EEEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHhccCCCcEEEEecCC
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPI---SVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V---~v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~~~~l~~~dvIil~vp~ 82 (503)
||+||| .|..|..|.+.|.+++|.+ .++.++...-+.+.-.+. .+... .+.+++ .. +|+||+|+|.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~-----~~~~~~~~~~~~-~~---~D~v~~a~g~ 71 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGK-----ELEVNEAKIESF-EG---IDIALFSAGG 71 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCe-----eEEEEeCChHHh-cC---CCEEEECCCH
Confidence 689999 6999999999999988864 344344332222211111 12221 123333 43 9999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+ ...+....+. ..|..|||.|+.
T Consensus 72 ~-~s~~~a~~~~---~~G~~VID~ss~ 94 (339)
T TIGR01296 72 S-VSKEFAPKAA---KCGAIVIDNTSA 94 (339)
T ss_pred H-HHHHHHHHHH---HCCCEEEECCHH
Confidence 6 4455554443 467899999874
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.41 Score=50.92 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=67.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec--C
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK--VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--K 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v--p 81 (503)
.++|.|||+|..|.+.+..|++.|++|+++|..+.. .+.+ +.+. .+.......+.+.. +|+||..- |
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l-~~g~-----~~~~~~~~~~~~~~---~d~vv~spgi~ 76 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKL-PENV-----ERHTGSLNDEWLLA---ADLIVASPGIA 76 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHH-hcCC-----EEEeCCCCHHHhcC---CCEEEECCCCC
Confidence 357999999999999999999999999999975432 2233 2221 12221222333443 78766543 2
Q ss_pred CC-hhHHHHHH---------HHHhcC-CCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 82 AG-SPVDQTIA---------ALSEHM-SPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 82 ~~-~~v~~vl~---------~l~~~l-~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
.+ ..+....+ ++...+ ....|-|..|++...++.-+...|...|..+
T Consensus 77 ~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~ 134 (438)
T PRK03806 77 LAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWKV 134 (438)
T ss_pred CCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCE
Confidence 22 22222221 333222 2234567777777777766777777766544
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.16 Score=48.56 Aligned_cols=84 Identities=15% Similarity=0.233 Sum_probs=54.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEE--EecCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIi--l~vp~~ 83 (503)
++|-|.|. |.+|..++..|+++|++|.+.+|++++.+.+..... +. . +++.+ .=+.+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~--------------~~--~---~~~~~~~~D~~~~ 66 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELR--------------AA--G---GEARVLVFDVSDE 66 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHH--------------hc--C---CceEEEEccCCCH
Confidence 57889985 999999999999999999999999877655443210 00 0 22322 223334
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++++++++...+.+=+.||++...
T Consensus 67 ~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (246)
T PRK05653 67 AAVRALIEAAVEAFGALDILVNNAGI 92 (246)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 45666666665544455677776543
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.077 Score=54.49 Aligned_cols=94 Identities=15% Similarity=0.219 Sum_probs=58.6
Q ss_pred CCcCCCCcEEEEcc-cHHHHHHHHHHHh-CCCc---EEEEeCC--hhHHHHHHHhhcccCCCCeeee-CCHHHHHhccCC
Q 010702 1 MEASALSRIGLAGL-AVMGQNLALNVAE-KGFP---ISVYNRT--TSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQR 72 (503)
Q Consensus 1 M~~~~~~~IgIIGl-G~mG~~lA~~L~~-~G~~---V~v~dr~--~~~~~~l~~~~~~~g~~~i~~~-~s~~e~~~~l~~ 72 (503)
|+... ++|||||+ |..|..|.+.|.+ ..++ +..+... ..+.-.+... .+... .+++++ .+
T Consensus 1 ~~~~~-~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~-------~l~v~~~~~~~~-~~--- 68 (347)
T PRK06728 1 MSEKG-YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR-------EIIIQEAKINSF-EG--- 68 (347)
T ss_pred CCCCC-CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc-------ceEEEeCCHHHh-cC---
Confidence 55433 58999996 9999999999995 5667 4444322 2221111110 12221 244444 44
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 73 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.|++|+++|.+ ...++...+. ..|..|||.|+..
T Consensus 69 ~Divf~a~~~~-~s~~~~~~~~---~~G~~VID~Ss~f 102 (347)
T PRK06728 69 VDIAFFSAGGE-VSRQFVNQAV---SSGAIVIDNTSEY 102 (347)
T ss_pred CCEEEECCChH-HHHHHHHHHH---HCCCEEEECchhh
Confidence 89999999986 4555555443 4689999998754
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.11 Score=52.47 Aligned_cols=81 Identities=11% Similarity=0.286 Sum_probs=53.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.||+|+|. |..|.-|.+.|..+.+ +-+.....+.. + . ..+.+++.++ +|++|+|+|++ .
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~-~el~~l~s~~~--~------------~-~~~~~~~~~~---~D~vFlalp~~-~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD-IELLSIAPDRR--K------------D-AAERAKLLNA---ADVAILCLPDD-A 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC-eEEEEEecccc--c------------C-cCCHhHhhcC---CCEEEECCCHH-H
Confidence 47999985 9999999999998853 33222221110 0 0 1244555555 89999999996 4
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
..+.+..+. ..|..|||.|+..
T Consensus 62 s~~~~~~~~---~~g~~VIDlSadf 83 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTAY 83 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChHH
Confidence 455555443 4688999999753
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.086 Score=52.52 Aligned_cols=74 Identities=12% Similarity=0.233 Sum_probs=56.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.||| ...+|.++|..|.++|..|++++... .++.+.+.+ +|+||.++....-
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t---------------------~~l~~~~~~---ADIvI~AvG~p~~ 214 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT---------------------KNLAELTKQ---ADILIVAVGKPKL 214 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc---------------------hhHHHHHHh---CCEEEEecCCCCc
Confidence 5799999 58899999999999999999986321 245566666 9999999977542
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 215 IT------ADMVKEGAVVIDVGVNR 233 (284)
T ss_pred CC------HHHcCCCCEEEEeeccc
Confidence 21 13468999999998654
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.25 Score=49.51 Aligned_cols=105 Identities=14% Similarity=0.186 Sum_probs=77.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhh
Q 010702 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (503)
Q Consensus 326 ~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~ 405 (503)
+.++.+|.++|.+....+..++|++.+.++ +++|.+++.++.+.+ ..+|.+++...+.+... +. ++.
T Consensus 163 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gid~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-~~-----~~~ 229 (291)
T TIGR01505 163 GDGQTCKVANQIIVALNIEAVSEALVFASK------AGVDPVRVRQALRGG-LAGSTVLEVKGERVIDR-TF-----KPG 229 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcC-cccCHHHHhhChhhhcC-CC-----CCC
Confidence 678899999999999999999999999874 449999999999876 45777776543332221 11 111
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010702 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (503)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (503)
|.- .-....++.+...|-+.|+|.|...++..+|....
T Consensus 230 f~~--~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~ 267 (291)
T TIGR01505 230 FRI--DLHQKDLNLALDSAKAVGANLPNTATVQELFNTLR 267 (291)
T ss_pred cch--HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Confidence 221 23345668888999999999999999998776543
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.12 Score=52.72 Aligned_cols=99 Identities=12% Similarity=0.065 Sum_probs=56.1
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChhH--HHHHHHhhcc---cCCCCeeeeCCHHHHHhccCCCc
Q 010702 8 RIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VDETLDRAHR---EGQLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 8 ~IgIIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~~~l~~~~~~---~g~~~i~~~~s~~e~~~~l~~~d 74 (503)
||+|||+ |.+|..+|..|+..|. ++.++|+++.. .+.....-.. .....+....+..+.+++ +|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~---aD 77 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTD---VD 77 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCC---CC
Confidence 6999999 9999999999998654 59999996542 2111100000 000012222232333344 99
Q ss_pred EEEEecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 75 SVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 75 vIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+||++.-. +. .++++...+.++..+..+||-.||-
T Consensus 78 iVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNP 127 (324)
T TIGR01758 78 VAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNP 127 (324)
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 99998632 11 1334445565654466677777753
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.19 Score=53.12 Aligned_cols=117 Identities=13% Similarity=0.107 Sum_probs=74.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEE--------Ee---CChhHHHHHHHhhcccCC--------C-CeeeeCCHHHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISV--------YN---RTTSKVDETLDRAHREGQ--------L-PLTGHYTPRDF 66 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v--------~d---r~~~~~~~l~~~~~~~g~--------~-~i~~~~s~~e~ 66 (503)
.+|+|-|.|++|...|+.|.+.|.+|.. || .+.++++.+.+.....+. + +.+.. +.+++
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~~~ 307 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGKKP 307 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCccc
Confidence 5899999999999999999999999888 88 777664434322111100 0 11111 23333
Q ss_pred HhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 67 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
... +||+.+-|--.+.-..+.++.|... .=++|+...|. | .+.+..+.|.++|+.|+.
T Consensus 308 ~~~--~cDVliPcAl~n~I~~~na~~l~~~--~ak~V~EgAN~-p-~t~eA~~iL~~rGI~~vP 365 (445)
T PRK14030 308 WEQ--KVDIALPCATQNELNGEDADKLIKN--GVLCVAEVSNM-G-CTAEAIDKFIAAKQLFAP 365 (445)
T ss_pred eec--cccEEeeccccccCCHHHHHHHHHc--CCeEEEeCCCC-C-CCHHHHHHHHHCCCEEeC
Confidence 331 4898887765543333344444321 34688888888 4 555677888999998774
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.086 Score=52.70 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=57.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|+++.... .++.+.+.+ +|+||.++.-..-
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------------------~~l~~~~~~---ADIvVsAvGkp~~ 216 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------------------RDLADYCSK---ADILVAAVGIPNF 216 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 57999995 7899999999999999999987431 245666666 9999999987643
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 217 i~------~~~ik~gaiVIDVGin~ 235 (294)
T PRK14187 217 VK------YSWIKKGAIVIDVGINS 235 (294)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 22 13477999999998654
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.31 Score=52.24 Aligned_cols=122 Identities=17% Similarity=0.141 Sum_probs=68.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec--CC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KA 82 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v--p~ 82 (503)
...+|+|+|+|.-|.+.++.|. .|.+|+++|.++.....+.+.... ......+ .+.... +|+||..- |.
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~---~d~vV~SPgI~~ 75 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANRDIFEELYSK----NAIAALS-DSRWQN---LDKIVLSPGIPL 75 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHh-CCCEEEEECCCCCchHHHHhhhcC----ceeccCC-hhHhhC---CCEEEECCCCCC
Confidence 3468999999999999999998 599999999664433222211000 1111112 233333 88887752 33
Q ss_pred Chh-HHHHH---------HHHH-hcCCC-CCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 83 GSP-VDQTI---------AALS-EHMSP-GDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 83 ~~~-v~~vl---------~~l~-~~l~~-g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
..+ +...- -+++ ..... ..|-|..|++...++.-+...++..|..+.-++-.|
T Consensus 76 ~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG 140 (454)
T PRK01368 76 THEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIG 140 (454)
T ss_pred CCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCC
Confidence 222 22211 1222 22222 346666777777666667777777776554333333
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.29 Score=47.86 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=65.5
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCC-Cc-EEEEeCChhHH-----HHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEE
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKG-FP-ISVYNRTTSKV-----DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G-~~-V~v~dr~~~~~-----~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIi 77 (503)
++||+|+|+ |.||+.+.+.+.+.. ++ +..++|.+... .++...+ .+++...+++.....+ +|++|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~----~~gv~v~~~~~~~~~~---~DV~I 74 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG----LLGVPVTDDLLLVKAD---ADVLI 74 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc----ccCceeecchhhcccC---CCEEE
Confidence 579999998 999999999998776 45 44678876532 1221111 1234455555544444 89988
Q ss_pred EecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc
Q 010702 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (503)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~ 124 (503)
=-..+ ..+.+.++-.+ ..+..+|-.+|+......+..+.+.++
T Consensus 75 DFT~P-~~~~~~l~~~~---~~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 75 DFTTP-EATLENLEFAL---EHGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred ECCCc-hhhHHHHHHHH---HcCCCeEEECCCCCHHHHHHHHHHHhh
Confidence 76544 34454444333 345556667777666555555555544
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.26 Score=50.97 Aligned_cols=124 Identities=14% Similarity=0.222 Sum_probs=69.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|||+|-+|+.++.+|+..|. +++++|.+.=....+..+-.. ....+-..+....+-+..+ .+++-+.+.+..
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~v~~~~~~ 106 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL-NPDVKVTVSVRR 106 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH-CCCcEEEEEEee
Confidence 3589999999999999999999997 688999886333333221100 0000000011112222221 266666666543
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
-. .+-.. ..+..-++|||++-.. ..-..+...+.+.++-|+.+.+.|
T Consensus 107 i~-~~~~~---~~~~~~DvVvd~~d~~-~~r~~~n~~c~~~~ip~v~~~~~g 153 (355)
T PRK05597 107 LT-WSNAL---DELRDADVILDGSDNF-DTRHLASWAAARLGIPHVWASILG 153 (355)
T ss_pred cC-HHHHH---HHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEec
Confidence 21 11122 2234568999998653 222334556677788888776554
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.031 Score=58.77 Aligned_cols=33 Identities=27% Similarity=0.634 Sum_probs=31.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
.+|.|||.|.+|.+.|..|++.|++|+++|+.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999875
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.18 Score=49.95 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=35.1
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 46 (503)
+++|-|.|. |.+|..+|+.|++.|++|.+.+|+++..+++.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~ 45 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE 45 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 346778886 99999999999999999999999988766554
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.19 Score=48.90 Aligned_cols=86 Identities=17% Similarity=0.254 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+... +. . .+...+..=+.+...
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~--------------~~--~-~~~~~~~~D~~~~~~ 73 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLK--------------GQ--G-LSAHALAFDVTDHDA 73 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--------------hc--C-ceEEEEEccCCCHHH
Confidence 4688887 4999999999999999999999999877655443210 00 0 001222222344455
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++...+.+=++||++...
T Consensus 74 ~~~~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 74 VRAAIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666666555555677776543
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.19 Score=49.13 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=29.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-----------CcEEEEeCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-----------FPISVYNRTT 39 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-----------~~V~v~dr~~ 39 (503)
..+|.|||+|-.|+.++.+|++.| .+++++|.+.
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 468999999999999999999874 2889998765
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.22 Score=52.91 Aligned_cols=74 Identities=9% Similarity=0.179 Sum_probs=50.0
Q ss_pred CcEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhccCCCcE
Q 010702 7 SRIGLAGLAVM-GQNLALNVAEK-----GFPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRS 75 (503)
Q Consensus 7 ~~IgIIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~l~~---~~~~-~g-~~~i~~~~s~~e~~~~l~~~dv 75 (503)
|||+|||.|.. +..+...|+.. +-+|+++|.++++.+.... +... .| .+++..+.+.++++.. +|+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g---ADf 77 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD---ADF 77 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCC---CCE
Confidence 68999999885 12244455433 3579999999987654322 1110 01 2357888899999887 999
Q ss_pred EEEecCCC
Q 010702 76 VIILVKAG 83 (503)
Q Consensus 76 Iil~vp~~ 83 (503)
||..+..+
T Consensus 78 Vi~~irvG 85 (437)
T cd05298 78 VFAQIRVG 85 (437)
T ss_pred EEEEeeeC
Confidence 99998654
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.26 Score=46.96 Aligned_cols=84 Identities=13% Similarity=0.200 Sum_probs=56.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..+++.|+++|++|.+.+|++++..+..+... . .. .+++..-+.+...
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--------------~--~~---~~~~~~D~~~~~~ 68 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVP--------------A--DA---LRIGGIDLVDPQA 68 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHh--------------h--cC---ceEEEeecCCHHH
Confidence 4688887 4999999999999999999999999876554432210 0 01 3344444555556
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++.....+-+.|++....
T Consensus 69 ~~~~~~~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 69 ARRAVDEVNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHHHHHHHHhCCcCEEEECCcc
Confidence 677777666555455777776543
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.096 Score=52.52 Aligned_cols=74 Identities=18% Similarity=0.302 Sum_probs=57.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.+||..|.++|..|+++... +.++++.+.+ +|+||.++.-..-
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------------------T~nl~~~~~~---ADIvv~AvGk~~~ 223 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------------------TPDPESIVRE---ADIVIAAAGQAMM 223 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999995 778999999999999999999642 1356666666 9999999976432
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 224 i~------~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 224 IK------GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 21 13578999999998654
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.24 Score=49.66 Aligned_cols=108 Identities=16% Similarity=0.069 Sum_probs=75.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCC-CCCcc-
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNL-ASLVV- 402 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~-~~ll~- 402 (503)
.+.++.+|+++|.+.++.++.++|++.+.++ .++|...+.++.+.+. -+|+.++.... .+.. ...+.
T Consensus 159 ~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gld~~~~~~~~~~~~-~~s~~~~~~~~----~~~~~~~~~~~ 227 (288)
T TIGR01692 159 HGAGQAAKICNNMLLGISMIGTAEAMALGEK------LGLDPKVLFEIANTSS-GRCWSSDTYNP----VPGVMPQAPAS 227 (288)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC-ccCcHHHHhCC----Ccccccccccc
Confidence 3788999999999999999999999999874 3399999999998763 35655442211 0000 00000
Q ss_pred ---hhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010702 403 ---DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (503)
Q Consensus 403 ---~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (503)
++.| .+.-...+++.+...|-+.|+|+|....+...|....
T Consensus 228 ~~~~~~f--~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 271 (288)
T TIGR01692 228 NGYQGGF--GTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFD 271 (288)
T ss_pred CCCCCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 1122 2224456778999999999999999999988776443
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.2 Score=49.51 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=55.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.+... .. ...+..-+.+...
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~-----------------~~---~~~~~~D~~d~~~ 64 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHP-----------------DR---ALARLLDVTDFDA 64 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcC-----------------CC---eeEEEccCCCHHH
Confidence 46888874 999999999999999999999999887665543210 00 1223333444445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+...++++.....+=++||++...
T Consensus 65 ~~~~~~~~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 65 IDAVVADAEATFGPIDVLVNNAGY 88 (277)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCc
Confidence 666666665544444677777554
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.3 Score=56.23 Aligned_cols=110 Identities=10% Similarity=0.054 Sum_probs=67.6
Q ss_pred CcEEEEcccHHHHHH-HHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeee-CCHHHHHhccCCCcEEEEe--cC
Q 010702 7 SRIGLAGLAVMGQNL-ALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIIL--VK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~l-A~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~-~s~~e~~~~l~~~dvIil~--vp 81 (503)
++|.|||+|..|.+. |+.|.+.|++|+++|.++. ..+++.+.+ +... ....+.+.. +|+||.+ +|
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~g-------i~~~~g~~~~~~~~---~d~vV~SpgI~ 74 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKG-------ARFFLGHQEEHVPE---DAVVVYSSSIS 74 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHcCC---CCEEEECCCcC
Confidence 469999999999886 9999999999999997643 344444433 2222 122233333 8988875 33
Q ss_pred CC-hhHHHHH---------HHHHhcCCC--CCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 82 AG-SPVDQTI---------AALSEHMSP--GDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 82 ~~-~~v~~vl---------~~l~~~l~~--g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
.+ ..+.... -+++..+.+ ..|-|..|++...++.-+...|+..|.
T Consensus 75 ~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 75 KDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 32 2222221 123222222 356777778877777667777777664
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.57 Score=51.21 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=49.5
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc-----cC-----CCCeee--eCCHHHHHhccCCCc
Q 010702 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR-----EG-----QLPLTG--HYTPRDFVLSIQRPR 74 (503)
Q Consensus 8 ~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-----~g-----~~~i~~--~~s~~e~~~~l~~~d 74 (503)
.|.|.|. |.+|..+++.|++.|++|.+++|+.++.+.+.+.... .| ...+.. ..+.+++.+.+..+|
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiD 161 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNAS 161 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCC
Confidence 4778875 9999999999999999999999999887665432100 00 000111 124445545556689
Q ss_pred EEEEecC
Q 010702 75 SVIILVK 81 (503)
Q Consensus 75 vIil~vp 81 (503)
+||.++.
T Consensus 162 iVVn~AG 168 (576)
T PLN03209 162 VVICCIG 168 (576)
T ss_pred EEEEccc
Confidence 9998864
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.26 Score=47.93 Aligned_cols=84 Identities=13% Similarity=0.132 Sum_probs=54.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|+|. |.+|..++..|+++|++|.+.+|++++.+.+.+.... .. ..++-.-+.+...
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~D~~~~~~ 63 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGD----------------AR---FVPVACDLTDAAS 63 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC----------------Cc---eEEEEecCCCHHH
Confidence 46888885 8999999999999999999999998877665542100 00 2233333444445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+...++++.....+=++||++...
T Consensus 64 ~~~~~~~~~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 64 LAAALANAAAERGPVDVLVANAGA 87 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 555566555544444677776653
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.25 Score=48.59 Aligned_cols=80 Identities=11% Similarity=0.200 Sum_probs=54.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.|. |.+|..++..|++.|++|.+.+|++++.+++...+ ..++..-+.+...
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~-----------------------~~~~~~Dv~~~~~ 60 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLG-----------------------VHPLSLDVTDEAS 60 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCC-----------------------CeEEEeeCCCHHH
Confidence 46888885 99999999999999999999999987765443211 2233334445456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++.....+=+++|++...
T Consensus 61 ~~~~~~~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 61 IKAAVDTIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCc
Confidence 666666665544444677776543
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.15 Score=49.65 Aligned_cols=86 Identities=16% Similarity=0.161 Sum_probs=57.3
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
+++|-|.| .|.+|..++..|+++|++|.+.+|++++.+++.+.. .. . . . ..++-+=+.+..
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~--------~~-~---~---~---~~~~~~Dl~~~~ 63 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARL--------PK-A---A---R---VSVYAADVRDAD 63 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc--------cc-C---C---e---eEEEEcCCCCHH
Confidence 35787887 699999999999999999999999988766554321 00 0 0 1 233333344445
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.+++.++++.....+-+++|++...
T Consensus 64 ~i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 64 ALAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCc
Confidence 6667777766555445788877653
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.25 Score=48.02 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=53.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..+|+.|+++|++|.+.+|+.+..+++.+... .. ...+..-+.+...
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 66 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG-----------------PA---AIAVSLDVTRQDS 66 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC-----------------Cc---eEEEEccCCCHHH
Confidence 4577887 5999999999999999999999999887665543210 00 1122222334445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
++.+++.+...+.+=+++|++..
T Consensus 67 ~~~~~~~~~~~~~~id~li~~ag 89 (257)
T PRK07067 67 IDRIVAAAVERFGGIDILFNNAA 89 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666655555567777654
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.039 Score=57.61 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=32.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
.++|.|||.|..|..+|..|+++|++|++++|++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 35899999999999999999999999999999864
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.14 Score=53.30 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=33.2
Q ss_pred CCCcEEEE----c-ccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 010702 5 ALSRIGLA----G-LAVMGQNLALNVAEKGFPISVYNRTTSK 41 (503)
Q Consensus 5 ~~~~IgII----G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~ 41 (503)
++++|.|+ | .|.+|..++..|+++||+|++.+|++..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 45689999 6 5999999999999999999999998765
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.1 Score=52.06 Aligned_cols=74 Identities=12% Similarity=0.234 Sum_probs=56.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|||- ..+|.++|..|.++|..|+++... +.++.+...+ +|+||.++.-..-
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~---------------------T~~L~~~~~~---ADIvV~AvGkp~~ 215 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---------------------THNLSSITSK---ADIVVAAIGSPLK 215 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCCCc
Confidence 57999995 789999999999999999998632 1245666666 9999999976542
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ...+++|.+|||.+...
T Consensus 216 i~------~~~vk~GavVIDvGin~ 234 (288)
T PRK14171 216 LT------AEYFNPESIVIDVGINR 234 (288)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 22 13478999999998653
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.17 Score=48.69 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=36.1
Q ss_pred cCCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010702 3 ASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (503)
Q Consensus 3 ~~~~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 46 (503)
..+.++|.|.| .|.+|..+++.|+++|++|.+.+|++++...+.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~ 47 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATA 47 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 33345788888 699999999999999999999999987655443
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.25 Score=49.80 Aligned_cols=104 Identities=12% Similarity=0.071 Sum_probs=75.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHH-HH-HHHhcCCCCCCCcc
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDR-IK-KAYQRNPNLASLVV 402 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~-i~-~~~~~~~~~~~ll~ 402 (503)
.++++-+|.+.|-+..+.+..++|++.+.++. ++|...+.++.+.+. ..+..+.. .. .++..+.
T Consensus 164 ~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------Gld~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~------- 229 (296)
T PRK15461 164 PGMGIRVKLINNYMSIALNALSAEAAVLCEAL------GLSFDVALKVMSGTA-AGKGHFTTTWPNKVLKGDL------- 229 (296)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCc-ccChHHHccccchhccCCC-------
Confidence 37889999999999999999999999998853 399999999988762 33433322 21 1221111
Q ss_pred hhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 010702 403 DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTY 444 (503)
Q Consensus 403 ~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~ 444 (503)
++.| .++-...+++-+...|-+.|+|.|....+...|..-
T Consensus 230 ~~~f--~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a 269 (296)
T PRK15461 230 SPAF--MIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQA 269 (296)
T ss_pred CCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 1233 334456677899999999999999999998876543
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.27 Score=47.16 Aligned_cols=89 Identities=9% Similarity=0.053 Sum_probs=58.3
Q ss_pred CCcCCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 1 M~~~~~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|.+...+++-|.| .|.+|..++..|+++|+.|.+.+|++++.+.+..... .. ..++-.=
T Consensus 1 ~~~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~-----------------~~---~~~~~~D 60 (245)
T PRK12936 1 MFDLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELG-----------------ER---VKIFPAN 60 (245)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC-----------------Cc---eEEEEcc
Confidence 4433345788887 6999999999999999999999998877665543210 01 2222222
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.+...++.+++++.+.+.+=+.||++...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 61 LSDRDEVKALGQKAEADLEGVDILVNNAGI 90 (245)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 344456666667766655555778877654
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.44 Score=51.26 Aligned_cols=112 Identities=15% Similarity=0.057 Sum_probs=66.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-H---HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec-
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-K---VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV- 80 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~---~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v- 80 (503)
.++|+|+|+|.-|.+.|+.|.+.|.+|+++|.++. . ..++.+.+. .+....+ .+.+.. +|+||.+-
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~-----~~~~~~~-~~~~~~---~d~vV~Spg 78 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAAL-----LVETEAS-AQRLAA---FDVVVKSPG 78 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCE-----EEeCCCC-hHHccC---CCEEEECCC
Confidence 35799999999999999999999999999995432 1 123322110 0111223 333444 89988763
Q ss_pred -CCChh-HHHHH---------HHH-Hhc-CC-----CCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 81 -KAGSP-VDQTI---------AAL-SEH-MS-----PGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 81 -p~~~~-v~~vl---------~~l-~~~-l~-----~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
|...+ ++... -++ ... .. ...|-|..|++...++.-+...|...|.
T Consensus 79 I~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 142 (468)
T PRK04690 79 ISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGH 142 (468)
T ss_pred CCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 43322 22221 122 111 21 2356677777777667667777776663
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.11 Score=51.61 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=56.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|+++... +.++++..++ +|+||.++.-..-
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~---------------------T~nl~~~~~~---ADIvI~AvGk~~~ 213 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSR---------------------TADLAGEVGR---ADILVAAIGKAEL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 57999994 789999999999999999998532 1245566666 9999999976532
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 214 VK------GAWVKEGAVVIDVGMNR 232 (282)
T ss_pred cC------HHHcCCCCEEEEeecee
Confidence 22 13478999999998654
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.12 Score=51.57 Aligned_cols=74 Identities=11% Similarity=0.236 Sum_probs=56.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+++.|||- ..+|.+||..|.+ ++..|+++... +.++++.+++ +|+||.++.-+
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------------------T~~l~~~~k~---ADIvV~AvGkp 214 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------------------TRDLAAHTRR---ADIIVAAAGVA 214 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------------------CCCHHHHHHh---CCEEEEecCCc
Confidence 57999995 7899999999998 68899988643 1355666666 99999999775
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.-+. ..++++|.+|||.+...
T Consensus 215 ~~i~------~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 215 HLVT------ADMVKPGAAVLDVGVSR 235 (284)
T ss_pred CccC------HHHcCCCCEEEEccccc
Confidence 4222 13578999999998764
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.12 Score=59.39 Aligned_cols=125 Identities=20% Similarity=0.202 Sum_probs=73.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|+|||+|-+|+.++.+|+..|. ++++.|-+.=....+..+.. ....++-..+....+.+.++ .+++=|.+.+..
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~I-NP~v~I~~~~~~ 410 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSV-NPFLDIRSFPEG 410 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHH-CCCCeEEEEecC
Confidence 3589999999999999999999997 68888876543333332210 00000001111223333322 266667776654
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhH-HHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t-~~~~~~l~~~gi~~i~~pvsg 135 (503)
..++.+++++. .=++|||+......+. ..+.+.+.+.++-++.+++.|
T Consensus 411 -I~~en~~~fl~---~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G 459 (989)
T PRK14852 411 -VAAETIDAFLK---DVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG 459 (989)
T ss_pred -CCHHHHHHHhh---CCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 23334444443 4589999887643333 345556677788888876654
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.11 Score=58.31 Aligned_cols=124 Identities=15% Similarity=0.176 Sum_probs=71.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|+|||+| +|+.+|..|+..|. +++++|.+.=....+.........++...+...++.+..+ .+++-|.+++..
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~i-np~i~v~~~~~~ 184 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAEL-DPYLPVEVFTDG 184 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3589999999 89999999999994 7899987753322222211000000000111122222222 266777777664
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg 136 (503)
- ..+.+++++. .-|+|||++-.. ..-..+.+.+.++++-++.+...+|
T Consensus 185 i-~~~n~~~~l~---~~DlVvD~~D~~-~~R~~ln~~a~~~~iP~i~~~~~~g 232 (722)
T PRK07877 185 L-TEDNVDAFLD---GLDVVVEECDSL-DVKVLLREAARARRIPVLMATSDRG 232 (722)
T ss_pred C-CHHHHHHHhc---CCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 2 2344555543 458999998764 3333445566777887776654444
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.31 Score=47.68 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=55.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++-|.| .|.+|..+|+.|+++|++|.+.+|++++.+.+.+... .. ..++..-+.+...
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 66 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG-----------------DH---VLVVEGDVTSYAD 66 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---ceEEEccCCCHHH
Confidence 4566777 4889999999999999999999999887766543210 00 2223333344445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 67 NQRAVDQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666776666555455778877653
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.13 Score=57.64 Aligned_cols=125 Identities=16% Similarity=0.209 Sum_probs=71.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|+|||+|-+|+.++.+|+..|. +++++|.+.=....+..+.. ....++-..+.-..+.+.++. +++-|.+.+..
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~in-P~~~I~~~~~~ 121 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSIN-PFLEITPFPAG 121 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhC-CCCeEEEEecC
Confidence 3589999999999999999999997 67888876533333322110 000000000111222222221 56666666654
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhH-HHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNT-ERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t-~~~~~~l~~~gi~~i~~pvsg 135 (503)
- ..+-++.+ +..-++|||+.......+ ..+.+.+...++-++.+++.|
T Consensus 122 i-~~~n~~~~---l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 122 I-NADNMDAF---LDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred C-ChHHHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 2 22233344 334589999987543233 345566777888888776554
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.27 Score=48.41 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=53.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++-|.| .|.+|..+++.|++.|++|.+.+|+++..+.+...+ .+.+..=+.+...
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------------------~~~~~~Dl~~~~~ 58 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAG-----------------------FTAVQLDVNDGAA 58 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC-----------------------CeEEEeeCCCHHH
Confidence 4577777 499999999999999999999999987655443211 2223233444456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++++++.+.+...+=++||++...
T Consensus 59 ~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 59 LARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666776665544444778877653
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.43 Score=44.31 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=58.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|++.|+|..-||..++..|++.|++|.+.+|++++.+.+..... . ... ...+-.-+.+...+
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~-----------~----~~~---i~~~~~Dv~d~~sv 62 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKREST-----------T----PES---ITPLPLDYHDDDAL 62 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhh-----------c----CCc---EEEEEccCCCHHHH
Confidence 46888887668888999999999999999999887665543210 0 001 12222234444556
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+.++++.+....+-++++..-- ..-...+...+++.|+.
T Consensus 63 ~~~i~~~l~~~g~id~lv~~vh--~~~~~~~~~~~~~~gv~ 101 (177)
T PRK08309 63 KLAIKSTIEKNGPFDLAVAWIH--SSAKDALSVVCRELDGS 101 (177)
T ss_pred HHHHHHHHHHcCCCeEEEEecc--ccchhhHHHHHHHHccC
Confidence 6666655544333345554322 22344455555555544
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.25 Score=51.25 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=29.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 39 (503)
.+|+|||+|-.|+.++..|++.|. +++++|.+.
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 589999999999999999999997 688998774
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.23 Score=47.52 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=53.6
Q ss_pred CCcCCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 1 M~~~~~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
|.+.++++|-|+| .|.+|..++..|+++|++|.+..|+.. ..+.+.... .+.-.. ..++..
T Consensus 1 ~~~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~--------------~~~~~~---~~~~~~ 63 (249)
T PRK12825 1 MGSLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAV--------------EALGRR---AQAVQA 63 (249)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHH--------------HhcCCc---eEEEEC
Confidence 5554556899997 599999999999999999887555443 333222211 000001 223333
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
-+.+...++++++++...+.+=+.||++..
T Consensus 64 D~~~~~~v~~~~~~~~~~~~~id~vi~~ag 93 (249)
T PRK12825 64 DVTDKAALEAAVAAAVERFGRIDILVNNAG 93 (249)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 334444566666666554444467777654
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.28 Score=48.38 Aligned_cols=83 Identities=11% Similarity=0.116 Sum_probs=55.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..++..|++.|++|.+.+|+++..+.+.+... .. ..++-.-+.+...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 62 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG-----------------DR---LWVLQLDVTDSAA 62 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------------Cc---eEEEEccCCCHHH
Confidence 4688887 5999999999999999999999999887666543210 01 2233333444445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.++.++.+...+=++||+++..
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 63 VRAVVDRAFAALGRIDVVVSNAGY 86 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666655544444777777653
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.32 Score=46.85 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=34.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 46 (503)
++|-|.|. |.+|..+++.|++.|++|.+.+|+++..+++.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 47 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAAR 47 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 56888875 99999999999999999999999977655544
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.3 Score=47.68 Aligned_cols=84 Identities=12% Similarity=0.164 Sum_probs=55.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+|-|.|. |.+|..+|+.|++.|++|.+.+|++++.++..+... +. .. ...+..=+.+...
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~--------------~~-~~---~~~~~~Dv~d~~~ 62 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELK--------------EY-GE---VYAVKADLSDKDD 62 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--------------hc-CC---ceEEEcCCCCHHH
Confidence 47888875 889999999999999999999999887665543210 00 00 1222223444456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
++++++++...+.+=+++|++..
T Consensus 63 ~~~~~~~~~~~~g~id~li~naG 85 (259)
T PRK08340 63 LKNLVKEAWELLGGIDALVWNAG 85 (259)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 77777776665555577777654
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.3 Score=48.37 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=57.1
Q ss_pred CCcCCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 1 M~~~~~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|.+..+++|-|.| .|.+|..+++.|+++|++|.+.+|+.+..++..+.... .. .++.++.
T Consensus 1 m~~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~~ 61 (287)
T PRK06194 1 MKDFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA----------------QG---AEVLGVR 61 (287)
T ss_pred CcCCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh----------------cC---CeEEEEE
Confidence 4433334677777 59999999999999999999999998766554432100 01 2332222
Q ss_pred --cCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 80 --VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 80 --vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.+...++.+++++.....+=++||++...
T Consensus 62 ~D~~d~~~~~~~~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 62 TDVSDAAQVEALADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 334445666666666554445788887654
|
|
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.41 Score=46.89 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=64.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
.++-|+|.|..+.++++.+...||+|+++|.+++......-.+. .......+++....+...+.|+++.-+. ..
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~t~vvi~th~h-~~ 174 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGV-----ATLVTDEPEAEVAEAPPGSYFLVLTHDH-AL 174 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCCc-----eEEecCCHHHHHhcCCCCcEEEEEeCCh-HH
Confidence 57999999999999999999999999999977652211110000 1123345666666555567777777654 34
Q ss_pred H-HHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 87 D-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 87 ~-~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
| .++..+++.. +-.-|=-.++ -....++.+.|.+.|+
T Consensus 175 D~~~L~~aL~~~-~~~YIG~lGS--r~k~~~~~~~L~~~G~ 212 (246)
T TIGR02964 175 DLELCHAALRRG-DFAYFGLIGS--KTKRARFEHRLRARGV 212 (246)
T ss_pred HHHHHHHHHhCC-CCcEEEEeCC--HHHHHHHHHHHHhcCC
Confidence 4 3445554221 1122322222 1344555666666553
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.16 Score=53.32 Aligned_cols=124 Identities=16% Similarity=0.173 Sum_probs=68.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|||+|-+|+.+|.+|+..|. +++++|.+.=....+..+.. .....+-.-+....+.+.++ .+++-+.+.+..
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~i~~~~~~ 120 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI-NPLVNVRLHEFR 120 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh-CCCcEEEEEecc
Confidence 3589999999999999999999997 68899877543333332210 00000000011112222221 155556555432
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
-. .+-+.++ +..-++|||++-. +..-..+.+.+...++-|+.+.+.|
T Consensus 121 i~-~~~~~~~---~~~~D~Vvd~~d~-~~~r~~ln~~~~~~~~p~v~~~~~g 167 (392)
T PRK07878 121 LD-PSNAVEL---FSQYDLILDGTDN-FATRYLVNDAAVLAGKPYVWGSIYR 167 (392)
T ss_pred CC-hhHHHHH---HhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 1122233 3445899998754 3333345556677788888766554
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.27 Score=47.96 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=53.3
Q ss_pred CCcCCCCc-EEEEccc---HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEE
Q 010702 1 MEASALSR-IGLAGLA---VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (503)
Q Consensus 1 M~~~~~~~-IgIIGlG---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvI 76 (503)
|+..+..| +-|.|.+ -+|.++|+.|++.|++|.+.+|+. +.++..++. . . .. ...+
T Consensus 1 ~~~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~--------~--~------~~---~~~~ 60 (252)
T PRK06079 1 MSGILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKL--------V--D------EE---DLLV 60 (252)
T ss_pred CccccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhh--------c--c------Cc---eeEE
Confidence 66665444 5556874 799999999999999999999883 332222110 0 0 00 1122
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
-.=+.+...++++++.+.....+=+++|++..
T Consensus 61 ~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAg 92 (252)
T PRK06079 61 ECDVASDESIERAFATIKERVGKIDGIVHAIA 92 (252)
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCCCEEEEccc
Confidence 22234445677777777655444467777654
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.079 Score=54.27 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=55.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC---cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHH-hccCCCcEEEEec
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV-LSIQRPRSVIILV 80 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~-~~l~~~dvIil~v 80 (503)
.++|+|||+ |..|..|.+.|.++.| ++..+..+...-+.+.-.+. .+... ++++.. .+ +|++|+++
T Consensus 4 ~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~-----~~~v~-~~~~~~~~~---~Dvvf~a~ 74 (336)
T PRK08040 4 GWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK-----SVTVQ-DAAEFDWSQ---AQLAFFVA 74 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc-----ceEEE-eCchhhccC---CCEEEECC
Confidence 468999996 9999999999998544 45544322111111110010 12222 334332 33 89999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
|.+ ...++...+. ..|..|||.|+.+
T Consensus 75 p~~-~s~~~~~~~~---~~g~~VIDlS~~f 100 (336)
T PRK08040 75 GRE-ASAAYAEEAT---NAGCLVIDSSGLF 100 (336)
T ss_pred CHH-HHHHHHHHHH---HCCCEEEECChHh
Confidence 986 4455555443 3689999999753
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.49 Score=50.19 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=50.6
Q ss_pred CcEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhccCCCcE
Q 010702 7 SRIGLAGLAVM-GQNLALNVAEK-----GFPISVYNRTTSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPRS 75 (503)
Q Consensus 7 ~~IgIIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~l~~---~~~~-~g-~~~i~~~~s~~e~~~~l~~~dv 75 (503)
+||+|||.|.. ...|...|+.. +-+|+++|+++++.+...+ .-.. .| .+++..+++.++++.. +|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g---ADf 77 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID---ADF 77 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CCE
Confidence 58999999884 23455556543 3579999999987654321 1110 01 1357888899999887 999
Q ss_pred EEEecCCC
Q 010702 76 VIILVKAG 83 (503)
Q Consensus 76 Iil~vp~~ 83 (503)
||..+..+
T Consensus 78 Vi~~irvG 85 (425)
T cd05197 78 VINQFRVG 85 (425)
T ss_pred EEEeeecC
Confidence 99998654
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.23 Score=48.14 Aligned_cols=86 Identities=13% Similarity=0.198 Sum_probs=57.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..+++.|+++|++|.+.+|++++.+++...... .. .+..++..-+.+...
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----------------~~-~~~~~~~~Dl~~~~~ 67 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK----------------AG-GKAIGVAMDVTDEEA 67 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh----------------cC-CcEEEEEcCCCCHHH
Confidence 4688888 69999999999999999999999998876665432110 00 002233333445556
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++.....+-++||++...
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 68 INAGIDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 667777776655556777776643
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.34 Score=50.98 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=71.7
Q ss_pred CCcEEEEcccHHHHHHH-HHHHh-----CCCcEEEEeCChhHHHHH-------HHhhcccCCCCeeeeCCHHHHHhccCC
Q 010702 6 LSRIGLAGLAVMGQNLA-LNVAE-----KGFPISVYNRTTSKVDET-------LDRAHREGQLPLTGHYTPRDFVLSIQR 72 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA-~~L~~-----~G~~V~v~dr~~~~~~~l-------~~~~~~~g~~~i~~~~s~~e~~~~l~~ 72 (503)
+.||+|||.|..+.+.- ..+.. .+.++.++|.++++.+.. .++... ..++..++|.+++++.
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~--~~kv~~ttd~~eAl~g--- 77 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGA--PVKVEATTDRREALEG--- 77 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCC--CeEEEEecCHHHHhcC---
Confidence 46899999999886632 22222 245799999999886522 222111 1257888999999888
Q ss_pred CcEEEEecCCCh-----------------------------------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHH
Q 010702 73 PRSVIILVKAGS-----------------------------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR 117 (503)
Q Consensus 73 ~dvIil~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~ 117 (503)
+|+|+.++..+. .+-+.++.+.. +.|+..+++.+|-....|+.+
T Consensus 78 AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~-~~P~Aw~lNytNP~~~vTeAv 156 (442)
T COG1486 78 ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEK-VCPNAWMLNYTNPAAIVTEAV 156 (442)
T ss_pred CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHH-hCCCceEEeccChHHHHHHHH
Confidence 999999984431 11122233333 447888888888776666665
Q ss_pred HHHHH
Q 010702 118 IHEAS 122 (503)
Q Consensus 118 ~~~l~ 122 (503)
.+...
T Consensus 157 ~r~~~ 161 (442)
T COG1486 157 RRLYP 161 (442)
T ss_pred HHhCC
Confidence 55444
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.27 Score=50.32 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=56.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcE--EEEecCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS--VIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dv--Iil~vp~~ 83 (503)
+.|-|.|. |-+|..+|+.|++.|++|.+.+|++++.+++.+... +. . +++ +..=+.+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~--------------~~--g---~~~~~~~~Dv~d~ 68 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECR--------------AL--G---AEVLVVPTDVTDA 68 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--------------hc--C---CcEEEEEeeCCCH
Confidence 35677776 899999999999999999999999988766554311 00 1 222 22334455
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.+++.+++.+.....+=+++|++...
T Consensus 69 ~~v~~~~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 69 DQVKALATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 56777777766554444788877543
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.32 Score=48.13 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=52.6
Q ss_pred CCcCCCCcEE-EEccc---HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcE-
Q 010702 1 MEASALSRIG-LAGLA---VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS- 75 (503)
Q Consensus 1 M~~~~~~~Ig-IIGlG---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dv- 75 (503)
|+..++.|+. |.|.+ -+|..+|+.|++.|++|.+.+|+.+..+.+.+. .+.+. ..+
T Consensus 1 ~~~~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~------------------~~~~g-~~~~ 61 (271)
T PRK06505 1 MEGLMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPL------------------AESLG-SDFV 61 (271)
T ss_pred CccccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHH------------------HHhcC-CceE
Confidence 5554544544 55876 699999999999999999999875432222211 00000 111
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+-.=+.+...++.+++.+.....+=+++|++...
T Consensus 62 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 95 (271)
T PRK06505 62 LPCDVEDIASVDAVFEALEKKWGKLDFVVHAIGF 95 (271)
T ss_pred EeCCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 1111334456777777766655455677776543
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.27 Score=47.74 Aligned_cols=86 Identities=15% Similarity=0.112 Sum_probs=54.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++-|.| .|.+|..+|+.|+++|++|.+.+|++++.+++.+..... -.. ..++..-+.+...
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~D~~~~~~ 69 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE--------------GGE---AVALAGDVRDEAY 69 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEcCCCCHHH
Confidence 4577777 589999999999999999999999988776655431100 000 1122222334445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++.....+=+++|++...
T Consensus 70 ~~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 70 AKALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666666544444677776543
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.13 Score=52.32 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=56.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||- ..+|.++|..|.++|..|+++.... .++++...+ +|+||.++.-..-
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 270 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------------------KDPEQITRK---ADIVIAAAGIPNL 270 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 57999995 7789999999999999999886321 245566666 9999999977543
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 271 v~------~d~vk~GavVIDVGin~ 289 (345)
T PLN02897 271 VR------GSWLKPGAVVIDVGTTP 289 (345)
T ss_pred cC------HHHcCCCCEEEEccccc
Confidence 22 13478999999998653
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.14 Score=52.54 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=57.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.||| -..+|.++|..|.++|..|+++... +.++++...+ +|+||.++.-..-
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------------------T~nl~~~~r~---ADIVIsAvGkp~~ 287 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------------------TKNPEEITRE---ADIIISAVGQPNM 287 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 5799999 4789999999999999999998532 1355666666 9999999977543
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++ ...+++|.+|||.+...
T Consensus 288 i~------~d~vK~GAvVIDVGIn~ 306 (364)
T PLN02616 288 VR------GSWIKPGAVVIDVGINP 306 (364)
T ss_pred CC------HHHcCCCCEEEeccccc
Confidence 22 13478999999998654
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.37 Score=46.99 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++-|+| .|.+|..+++.|+++|++|.+.+|+++..+++..... . .. ..++..=+.+...
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------~------~~---~~~~~~D~~~~~~ 62 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----------A------GN---AWTGALDVTDRAA 62 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----------C------Cc---eEEEEecCCCHHH
Confidence 4688887 5999999999999999999999999988776654310 0 01 2333333444455
Q ss_pred HHHHHHHHHhc-CCCCCEEEecCCC
Q 010702 86 VDQTIAALSEH-MSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~-l~~g~iIId~st~ 109 (503)
+++++..+.+. ..+=++||++...
T Consensus 63 v~~~~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 63 WDAALADFAAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHHHHHHHHHcCCCCCEEEECCCC
Confidence 66666655443 2333677776543
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.056 Score=56.43 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=34.8
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|+...+.+|.|||.|..|.++|..|+++|++|.++++.+.
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 4544456899999999999999999999999999998753
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.35 Score=52.02 Aligned_cols=116 Identities=13% Similarity=0.213 Sum_probs=74.5
Q ss_pred CcEEEEccc----------HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc--------c------cCC-CCeeeeC
Q 010702 7 SRIGLAGLA----------VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH--------R------EGQ-LPLTGHY 61 (503)
Q Consensus 7 ~~IgIIGlG----------~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~--------~------~g~-~~i~~~~ 61 (503)
++|+|+|+. .-...++..|.+.|.+|.+||.--...+.....+. . .+. -++..+.
T Consensus 325 ~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (473)
T PLN02353 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVW 404 (473)
T ss_pred CEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeC
Confidence 589999983 46778999999999999999976433211101100 0 000 0245566
Q ss_pred CHHHHHhccCCCcEEEEecCCChhHHHH-HHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 62 TPRDFVLSIQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 62 s~~e~~~~l~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
++.++++. +|+|++++..+ ..+.. +..+.+.+.+..+|+|+.+.... +.+++.|+.|++.+
T Consensus 405 ~~~~a~~~---aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~~G 466 (473)
T PLN02353 405 DAYEATKG---AHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYSIG 466 (473)
T ss_pred CHHHHhcC---CCEEEECCCCh-HhcccCHHHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEEeC
Confidence 77777776 99999999885 44432 35555555555589999988742 22334588887754
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.27 Score=47.79 Aligned_cols=86 Identities=12% Similarity=0.135 Sum_probs=55.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++-|+| .|.+|..++..|+++|++|.+.+|++++.+++..... +.... ...+-.-+.+...
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--------------~~~~~---~~~~~~Dl~~~~~ 65 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLS--------------KDGGK---AIAVKADVSDRDQ 65 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------hcCCe---EEEEECCCCCHHH
Confidence 3566666 6999999999999999999999999877665543211 00000 1122222444456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++++++++.....+=+++|++...
T Consensus 66 ~~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 66 VFAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 677777776655455778877654
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.61 Score=49.38 Aligned_cols=73 Identities=10% Similarity=0.098 Sum_probs=49.0
Q ss_pred CcEEEEcccHHHH-HHHHHHHhC-----CCcEEEEeCC-hhHHHHHHH---hhcc-cC-CCCeeeeCCHHHHHhccCCCc
Q 010702 7 SRIGLAGLAVMGQ-NLALNVAEK-----GFPISVYNRT-TSKVDETLD---RAHR-EG-QLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 7 ~~IgIIGlG~mG~-~lA~~L~~~-----G~~V~v~dr~-~~~~~~l~~---~~~~-~g-~~~i~~~~s~~e~~~~l~~~d 74 (503)
|||+|||.|..-. .+...|+.. +-+|+++|++ +++++.... .... .+ .+.+..+.+.++++.. +|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g---ad 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG---AD 77 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CC
Confidence 5899999998643 345555542 3579999999 787543221 1110 01 1357788899999887 99
Q ss_pred EEEEecCC
Q 010702 75 SVIILVKA 82 (503)
Q Consensus 75 vIil~vp~ 82 (503)
+||+++..
T Consensus 78 fVi~~~~v 85 (419)
T cd05296 78 FVFTQIRV 85 (419)
T ss_pred EEEEEEee
Confidence 99999743
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.16 Score=50.68 Aligned_cols=74 Identities=14% Similarity=0.257 Sum_probs=55.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEK----GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
++|.|||- ..+|.++|..|.++ +..|+++... +.++++.+++ +|+||.++.
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------------------T~~l~~~~~~---ADIvV~AvG 209 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------------------SENLTEILKT---ADIIIAAIG 209 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 57999995 77999999999988 6788887532 1345666666 999999997
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
-+.-+. ..++++|.+|||.+...
T Consensus 210 ~p~~i~------~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 210 VPLFIK------EEMIAEKAVIVDVGTSR 232 (287)
T ss_pred CcCccC------HHHcCCCCEEEEecccc
Confidence 653222 13578999999998654
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.3 Score=47.12 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=64.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhccCCCcEEEEe-----c
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIIL-----V 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~~~~l~~~dvIil~-----v 80 (503)
++|-=||+| |..|+.-|++.|.+|++.|.+++.++.........| ..+ -...+.+++...=..-|+|+.+ |
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g-v~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESG-VNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc-ccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 468888998 779999999999999999999988876654433221 111 1234566666532347988776 4
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEec
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDG 106 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~ 106 (503)
|++ +.++......++||-+++..
T Consensus 138 ~dp---~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 138 PDP---ESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred CCH---HHHHHHHHHHcCCCcEEEEe
Confidence 554 44667777778888777653
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.21 Score=50.31 Aligned_cols=108 Identities=15% Similarity=0.034 Sum_probs=73.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh--
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS-- 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~-- 84 (503)
.+|+|||--.=-..++..|.+.|++|.++.-+.+.. ... ++..+++.+++++. +|+|+..+|...
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~-------g~~~~~~~~~~~~~---ad~ii~~~p~~~~~ 69 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFT-------GATKSSSLEEALSD---VDVIILPVPGTNDE 69 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccC-------CceeeccHHHHhcc---CCEEEECCccccCC
Confidence 579999998888999999999999999876543211 111 25667778887776 999999988521
Q ss_pred -hHHHH-------H-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 85 -PVDQT-------I-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 85 -~v~~v-------l-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
.++.. + .+++..++++.+++ .+...+.. .+.+.++|+..++.+
T Consensus 70 ~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~----~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 70 GNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYL----KELAKETNRKLVELF 121 (296)
T ss_pred ceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHH----HHHHHHCCCeEEEEe
Confidence 11111 1 45677788998665 35554442 244668898887643
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.07 Score=54.47 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=47.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCH---HHHHhccCCCcEE---EE
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTP---RDFVLSIQRPRSV---II 78 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~---~e~~~~l~~~dvI---il 78 (503)
+++|||||-|..|+.|+..-.+-|++|.+.|.+++.-....... .+.. .+++ .++++. ||+| |.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~------~i~~~~dD~~al~ela~~---~DViT~EfE 71 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADR------VIVAAYDDPEALRELAAK---CDVITYEFE 71 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccc------eeecCCCCHHHHHHHHhh---CCEEEEeec
Confidence 36899999999999999999999999999998887544333221 1222 2333 455555 9987 44
Q ss_pred ecCC
Q 010702 79 LVKA 82 (503)
Q Consensus 79 ~vp~ 82 (503)
-||.
T Consensus 72 ~V~~ 75 (375)
T COG0026 72 NVPA 75 (375)
T ss_pred cCCH
Confidence 5555
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.14 Score=51.89 Aligned_cols=87 Identities=15% Similarity=0.191 Sum_probs=63.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
+++-|.|.|..|+++|.++...|-+|.|++.+|-+.-+..-.| ++ ..+.++++.. +|++|.++-.-
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdG-------f~-V~~m~~Aa~~---gDifiT~TGnk--- 275 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDG-------FR-VMTMEEAAKT---GDIFVTATGNK--- 275 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcC-------cE-EEEhHHhhhc---CCEEEEccCCc---
Confidence 3577889999999999999999999999999997654444333 33 3467777776 89999887553
Q ss_pred HHHH-HHHHhcCCCCCEEEecCC
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st 108 (503)
+|+ .+-...++.|.|+.+.+-
T Consensus 276 -dVi~~eh~~~MkDgaIl~N~GH 297 (420)
T COG0499 276 -DVIRKEHFEKMKDGAILANAGH 297 (420)
T ss_pred -CccCHHHHHhccCCeEEecccc
Confidence 344 233344778888877653
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.35 Score=47.68 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=57.2
Q ss_pred CCcCCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 1 MEASALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 1 M~~~~~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|+.-..+++-|.|. |.+|..+|+.|+++|++|.+.+|+ +..+++.+.... .-.. ...+..=
T Consensus 1 m~~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~--------------~~~~---~~~~~~D 62 (272)
T PRK08589 1 MKRLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKS--------------NGGK---AKAYHVD 62 (272)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHh--------------cCCe---EEEEEee
Confidence 44322345667775 899999999999999999999999 555544432110 0001 2233333
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.+...++.+++.+.....+=+++|++...
T Consensus 63 l~~~~~~~~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 63 ISDEQQVKDFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred cCCHHHHHHHHHHHHHHcCCcCEEEECCCC
Confidence 455556777777776655444778877653
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.29 Score=47.67 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=55.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++-|.| .|.+|..+++.|+++|++|.+.+|+++..+++.++... .... ....++..=+.+...+
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~Dl~~~~~~ 73 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIAR--------------DVAG-ARVLAVPADVTDAASV 73 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------ccCC-ceEEEEEccCCCHHHH
Confidence 466666 58999999999999999999999998877665543210 0000 0012222233444566
Q ss_pred HHHHHHHHhcCCCCCEEEecCCC
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.+++++.....+=+++|++...
T Consensus 74 ~~~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 74 AAAVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHHHHHHHhCCCcEEEECCCc
Confidence 77777766655455777776543
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.29 Score=49.05 Aligned_cols=86 Identities=22% Similarity=0.256 Sum_probs=56.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.|. |.+|..+|..|+++|++|.+.+|+.++.+++.+.... .-.. ..++-.-+.+...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~--------------~~~~---~~~~~~Dl~d~~~ 103 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITR--------------AGGD---AMAVPCDLSDLDA 103 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--------------cCCc---EEEEEccCCCHHH
Confidence 45777775 9999999999999999999999998877665543110 0000 2222223334456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++++++.+...+.+=+++|++...
T Consensus 104 v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 104 VDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 667777666655555778776543
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.36 Score=48.94 Aligned_cols=77 Identities=10% Similarity=0.111 Sum_probs=51.7
Q ss_pred CCcCCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHH---HHHhhcccCCC-----CeeeeCCHHHHHhccC
Q 010702 1 MEASALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDE---TLDRAHREGQL-----PLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 1 M~~~~~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~---l~~~~~~~g~~-----~i~~~~s~~e~~~~l~ 71 (503)
|.....++|.|-|+ |.+|+.+...|+++||+|.+--|+++.-+. +.+....+..+ .+.-..++.++++.
T Consensus 1 m~~~~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~g-- 78 (327)
T KOG1502|consen 1 MDQDEGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDG-- 78 (327)
T ss_pred CCCCCCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhC--
Confidence 33334578999985 999999999999999999999999886322 33221110001 22334466667766
Q ss_pred CCcEEEEec
Q 010702 72 RPRSVIILV 80 (503)
Q Consensus 72 ~~dvIil~v 80 (503)
||.||-+.
T Consensus 79 -cdgVfH~A 86 (327)
T KOG1502|consen 79 -CDGVFHTA 86 (327)
T ss_pred -CCEEEEeC
Confidence 99988654
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.36 Score=46.95 Aligned_cols=85 Identities=16% Similarity=0.217 Sum_probs=55.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|+| .|.+|..++..|+++|++|.+.+|+++..+++.+.... . . ..++..=+.+...
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----------~-----~---~~~~~~D~~~~~~ 72 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG-----------A-----K---VTATVADVADPAQ 72 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-----------C-----c---eEEEEccCCCHHH
Confidence 5788997 59999999999999999999999998766555432110 0 0 1222222333345
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++.+++++.+.+.+=+.||++....
T Consensus 73 ~~~~~~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 73 VERVFDTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCC
Confidence 5666666655555557777766543
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.36 Score=46.90 Aligned_cols=86 Identities=12% Similarity=0.138 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..+++.|+++|++|.+.+|+++..+++.+... +.-.. .+.+..-+.+...
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--------------~~~~~---~~~~~~Dl~~~~~ 74 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALR--------------AAGGA---AEALAFDIADEEA 74 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH--------------hcCCc---eEEEEccCCCHHH
Confidence 4677777 5999999999999999999999999877665543211 00000 2233333444455
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+..+++++.....+=+.+|.+...
T Consensus 75 ~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 75 VAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666677666544444667766543
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.2 Score=50.96 Aligned_cols=187 Identities=12% Similarity=0.054 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHH----hhcc---cCCC----------CeeeeCCHHHHHhccCCCcEEEEe
Q 010702 17 MGQNLALNVAEKGFPISVYNRTTSKVDETLD----RAHR---EGQL----------PLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 17 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~----~~~~---~g~~----------~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
||.+||..+..+|++|...|.+..-.+.-.. .... .+.+ +.....+..+ +..+|.++.+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~----~~~~dmviea 76 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTG----FANADMVIEA 76 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhccccccccc----ccccceeccc
Confidence 8999999999999999999999765432111 1000 0000 1222222223 3348999888
Q ss_pred cCCChhHH-HHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc--CccEeccc-CCCChhhhhcCCcccCCCCHHHH
Q 010702 80 VKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLGMG-VSGGEEGARHGPSLMPGGSFEAY 155 (503)
Q Consensus 80 vp~~~~v~-~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~i~~p-vsgg~~~a~~G~~i~~gg~~~a~ 155 (503)
|-.+-.++ +++.+|....++..++-..+|+.+.+.........++ |.||.... .+.--+- ..-..++..+.
T Consensus 77 v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEi-----i~~~~tS~~~i 151 (380)
T KOG1683|consen 77 VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEI-----ILALYTSKLTI 151 (380)
T ss_pred hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHH-----HHhcCCCchHH
Confidence 87765554 4456776666666655554554443332211111221 34443211 0000000 00011222222
Q ss_pred HHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 010702 156 NNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEW 227 (503)
Q Consensus 156 ~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~ 227 (503)
..+-..=..++ +-++.+|. ..|.++-.+. -...+++..++...| +++..++.+...+
T Consensus 152 A~Ain~~~~~g------k~~vvVg~-c~gf~v~r~l-------~~y~~~~~~~l~e~g-~~p~~iD~~~t~f 208 (380)
T KOG1683|consen 152 ATAINGGSPAG------KLPVVVGN-CCGFRVNRLL-------PPYTIGLNELLLEIG-ADPWLIDSLITKF 208 (380)
T ss_pred HHHHhcccccC------CccEEecc-CCceEEEecc-------cHHHHHHHHHHHHcC-CCHHHHHHHHHhc
Confidence 22222212222 44455554 4455443321 123467778888888 9999999887543
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.06 Score=56.57 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=31.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|+|.|||.|.+|.+.|..|+++|++|+++++...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 4799999999999999999999999999999754
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.14 Score=53.06 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=54.4
Q ss_pred CCcEEEEcc-cHHHHHHHH-HHHhCCCc---EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 6 LSRIGLAGL-AVMGQNLAL-NVAEKGFP---ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~-~L~~~G~~---V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|++|||||+ |.+|.-|.+ .|.+..+. +..+.... .......-.... ..+....+.+++ .+ +|++|+++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~-sg~~~~~f~g~~--~~v~~~~~~~~~-~~---~Divf~a~ 73 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQ-AGGAAPSFGGKE--GTLQDAFDIDAL-KK---LDIIITCQ 73 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchh-hCCcccccCCCc--ceEEecCChhHh-cC---CCEEEECC
Confidence 368999996 999999998 55555666 66654321 111111000000 011111234444 43 99999999
Q ss_pred CCChhHHHHHHHHHhcCCCC--CEEEecCCCC
Q 010702 81 KAGSPVDQTIAALSEHMSPG--DCIIDGGNEW 110 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g--~iIId~st~~ 110 (503)
|.+ ..+++...+.. .| .+|||.|+..
T Consensus 74 ~~~-~s~~~~~~~~~---aG~~~~VID~Ss~f 101 (369)
T PRK06598 74 GGD-YTNEVYPKLRA---AGWQGYWIDAASTL 101 (369)
T ss_pred CHH-HHHHHHHHHHh---CCCCeEEEECChHH
Confidence 985 55555555433 57 5799998753
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.061 Score=55.95 Aligned_cols=35 Identities=17% Similarity=0.428 Sum_probs=32.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|++|.|||.|..|..+|..|+++|++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 46899999999999999999999999999999875
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.46 Score=46.42 Aligned_cols=40 Identities=13% Similarity=0.284 Sum_probs=33.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 46 (503)
+++-|.| .|.+|..+|+.|++.|++|.+.+|+.+..+++.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~ 46 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELE 46 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4566777 488999999999999999999999987766654
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.46 Score=46.15 Aligned_cols=80 Identities=15% Similarity=0.077 Sum_probs=52.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|+|. |.+|..+++.|+++|++|.+.+|++.+.+...+.. . ..++..-+.+...
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~------------------~----~~~~~~D~~~~~~ 65 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV------------------G----GLFVPTDVTDEDA 65 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc------------------C----CcEEEeeCCCHHH
Confidence 46888886 99999999999999999999999987655443321 0 1222223334445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
++.+++.+.....+=+.||++..
T Consensus 66 ~~~~~~~~~~~~~~id~vi~~ag 88 (255)
T PRK06057 66 VNALFDTAAETYGSVDIAFNNAG 88 (255)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666554444466666654
|
|
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.22 Score=48.67 Aligned_cols=116 Identities=15% Similarity=0.178 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEE--------eCChhHHHHHHHhhcccCC-C-C--------eeeeCCHH-HHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVY--------NRTTSKVDETLDRAHREGQ-L-P--------LTGHYTPR-DFV 67 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~--------dr~~~~~~~l~~~~~~~g~-~-~--------i~~~~s~~-e~~ 67 (503)
+++.|-|.|.+|..+|+.|.+.|..|... |.+.-.++++.+.....+. + . .... +.+ ++.
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~il 111 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYI-PNDDEIL 111 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEE-CHHCHGG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEe-ccccccc
Confidence 58999999999999999999999876544 6555455555542111110 0 0 1111 222 444
Q ss_pred hccCCCcEEEEecCCChhHHHHHH-HHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 68 LSIQRPRSVIILVKAGSPVDQTIA-ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 68 ~~l~~~dvIil~vp~~~~v~~vl~-~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
.. +||+++-|--.+....+.+. .+.+ .=++|+...|.... .+....|.++|+.++.
T Consensus 112 ~~--~~DiliP~A~~~~I~~~~~~~~i~~---~akiIvegAN~p~t--~~a~~~L~~rGI~viP 168 (244)
T PF00208_consen 112 SV--DCDILIPCALGNVINEDNAPSLIKS---GAKIIVEGANGPLT--PEADEILRERGILVIP 168 (244)
T ss_dssp TS--SSSEEEEESSSTSBSCHHHCHCHHT---T-SEEEESSSSSBS--HHHHHHHHHTT-EEE-
T ss_pred cc--cccEEEEcCCCCeeCHHHHHHHHhc---cCcEEEeCcchhcc--HHHHHHHHHCCCEEEc
Confidence 32 49999998655433333333 2221 13688888887653 3334488999987774
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.49 Score=46.89 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=67.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|||+|.+|+.+|.+|++.| -+++++|.+.-....+..+... ....+-.-+.-..+-+..+ .+++-+..++..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I-NP~~~V~~i~~~ 108 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI-NPECRVTVVDDF 108 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH-CCCcEEEEEecc
Confidence 358999999999999999999999 5799998775433332211000 0000000000111222211 155555555432
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
...+-++++.. ..-++|||+.-.. .....+.+.+.+.++-++.++
T Consensus 109 -i~~e~~~~ll~--~~~D~VIdaiD~~-~~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 109 -ITPDNVAEYMS--AGFSYVIDAIDSV-RPKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred -cChhhHHHHhc--CCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 11222333331 2458999986543 344456777788888888663
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.39 Score=49.19 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=56.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEE--EecCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIi--l~vp~~ 83 (503)
++|-|.|. |.+|..+|+.|++.|++|.+.+|++++.+++.+... +. . +++.+ .=+.+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~--------------~~--g---~~~~~v~~Dv~d~ 69 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIR--------------AA--G---GEALAVVADVADA 69 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--------------Hc--C---CcEEEEEecCCCH
Confidence 35777774 999999999999999999999999887666544211 00 0 22322 223444
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++.+++.+...+.+=+++|++...
T Consensus 70 ~~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 70 EAVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCc
Confidence 56777777776655555788877653
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.078 Score=55.58 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=34.7
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|...+..+|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4444556899999999999999999999999999998753
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.39 Score=50.59 Aligned_cols=108 Identities=15% Similarity=0.083 Sum_probs=63.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~~ 84 (503)
|+|.|+|+|.-|.++|+.|. .|+.|+++|..+.... +.+.+ +... . .+... ...+|+||.+ +|.+.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~g-------i~~~-~-~~~~~-~~~~d~vv~sp~i~~~~ 68 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEG-------NLLL-P-SNDFD-PNKSDLEIPSPGIPPSH 68 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcC-------CEEe-c-HHHcC-cCCCCEEEECCCCCCCC
Confidence 57999999999999999999 9999999996643211 11111 2332 2 22221 1238888765 44432
Q ss_pred h-H---HHHHH--HHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 85 P-V---DQTIA--ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 85 ~-v---~~vl~--~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
+ + ++++. +++..+.+..|-|..|++...++.-+...|...|.
T Consensus 69 ~~~~~a~~i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g~ 116 (401)
T PRK03815 69 PLIQKAKNLISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFGA 116 (401)
T ss_pred HHHHHHHHHhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCCC
Confidence 2 2 22221 22222223356677777776666666777777663
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.09 Score=40.62 Aligned_cols=30 Identities=20% Similarity=0.522 Sum_probs=27.4
Q ss_pred EEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 11 LAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 11 IIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|||.|.-|...|..|+++|++|.++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998864
|
... |
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.069 Score=55.25 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=32.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|+|.|||.|.-|..+|..|+++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5899999999999999999999999999998875
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.33 Score=47.06 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=56.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..+|+.|+++|++|.+.+|+++..+.+.+.... .-.. ...+..-+.+...
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~D~~~~~~ 68 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDD--------------LGRR---ALAVPTDITDEDQ 68 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH--------------hCCc---eEEEecCCCCHHH
Confidence 4677887 59999999999999999999999998766555433110 0000 2233333444456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++.+.+.+.+=++||++...
T Consensus 69 ~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 69 CANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHHHcCCccEEEECCcc
Confidence 677777766655555777777643
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.36 Score=47.82 Aligned_cols=90 Identities=10% Similarity=0.092 Sum_probs=56.3
Q ss_pred CCcCCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcE--EE
Q 010702 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS--VI 77 (503)
Q Consensus 1 M~~~~~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dv--Ii 77 (503)
|.+.+.+.+-|.| .|.+|..+|..|++.|++|.+.+|+++..+++.+.... .. .++ +-
T Consensus 1 ~~~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~----------------~~---~~~~~~~ 61 (275)
T PRK05876 1 MDGFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRA----------------EG---FDVHGVM 61 (275)
T ss_pred CCCcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----------------cC---CeEEEEe
Confidence 4442233455666 79999999999999999999999998776654432100 00 222 22
Q ss_pred EecCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.=+.+...++.+++++.....+=+++|++...
T Consensus 62 ~Dv~d~~~v~~~~~~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 62 CDVRHREEVTHLADEAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 22334456667777766655455778876543
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.95 Score=48.19 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=66.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhH--HHHHHHhhcccCCCCeeee-CCHHHHHhccCCCcEEEEec-
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSK--VDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVIILV- 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~~-~s~~e~~~~l~~~dvIil~v- 80 (503)
++|.|||+|..|.+-+..|.+. |++|+++|..+.. .+.+.+ +. .+... .+++. +.+ +|+||.+-
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~-----~~~~g~~~~~~-~~~---~d~vV~Spg 77 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DV-----ELHSGGWNLEW-LLE---ADLVVTNPG 77 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CC-----EEEeCCCChHH-hcc---CCEEEECCC
Confidence 5799999999999999888887 5899999976532 223322 21 12112 23333 344 89887763
Q ss_pred -CCCh-hHHHHH---------HHHHh-cCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 81 -KAGS-PVDQTI---------AALSE-HMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 81 -p~~~-~v~~vl---------~~l~~-~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
|.+. .+.... -+++. .+....|-|..|++...++.-+...+...|....
T Consensus 78 I~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~ 138 (438)
T PRK04663 78 IALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVA 138 (438)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 3322 222221 13332 2333456666777776666666777777665443
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.18 Score=49.85 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=57.7
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|||-+ .+|++|+..|...++.|+++.... .++.+..++ +|+++.++--+.-
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------------------~~l~~~~k~---ADIvv~AvG~p~~ 212 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------------------KDLASITKN---ADIVVVAVGKPHF 212 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------------------CCHHHHhhh---CCEEEEecCCccc
Confidence 579999975 579999999999999999997542 245555565 9999999966543
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
++ .+.+.+|.+|||.+....
T Consensus 213 i~------~d~vk~gavVIDVGinrv 232 (283)
T COG0190 213 IK------ADMVKPGAVVIDVGINRV 232 (283)
T ss_pred cc------cccccCCCEEEecCCccc
Confidence 33 356789999999987643
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.1 Score=41.34 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=30.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
||.|||.|..|.-+|..|++.|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 588999999999999999999999999998875
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.37 Score=48.80 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=57.6
Q ss_pred CCcCCCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 1 MEASALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 1 M~~~~~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|.....++|-|.| .|.+|..+++.|++.|++|.+.+|+.++.+++.+.. .. . . .. ..++..=
T Consensus 1 m~~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l--------~~-~--~---~~---~~~~~~D 63 (322)
T PRK07453 1 MSQDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQEL--------GI-P--P---DS---YTIIHID 63 (322)
T ss_pred CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--------hc-c--C---Cc---eEEEEec
Confidence 4433344577777 599999999999999999999999988776655431 00 0 0 01 2233333
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
+.+...++.+++++.....+=++||++..
T Consensus 64 l~~~~~v~~~~~~~~~~~~~iD~li~nAg 92 (322)
T PRK07453 64 LGDLDSVRRFVDDFRALGKPLDALVCNAA 92 (322)
T ss_pred CCCHHHHHHHHHHHHHhCCCccEEEECCc
Confidence 44545666677665544333477777654
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.22 Score=49.88 Aligned_cols=74 Identities=16% Similarity=0.283 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEK----GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
++|.||| ...+|.++|..|.++ +..|+++... +.++++.+++ +|+||.++.
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvVsAvG 217 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR---------------------SKNLARHCQR---ADILIVAAG 217 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC---------------------CcCHHHHHhh---CCEEEEecC
Confidence 5799999 478999999999988 6789887532 1245566666 999999996
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
-+.-+. ...+++|.+|||.+...
T Consensus 218 kp~~i~------~~~ik~gavVIDvGin~ 240 (297)
T PRK14168 218 VPNLVK------PEWIKPGATVIDVGVNR 240 (297)
T ss_pred CcCccC------HHHcCCCCEEEecCCCc
Confidence 653222 13478999999998654
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.70 E-value=1 Score=43.02 Aligned_cols=79 Identities=11% Similarity=0.150 Sum_probs=52.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||.|..|..=++.|++.|-+|+++..+. +....+...+... -+...-.++++. .+++||.++++. .
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~---~~~~~~~~~~~~----~~~lviaAt~d~-~ 84 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIK---WIEREFDAEDLD----DAFLVIAATDDE-E 84 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcc---hhhcccChhhhc----CceEEEEeCCCH-H
Confidence 579999999999999999999999999997766 4455555443210 011112233332 389999999885 5
Q ss_pred HHHHHHHH
Q 010702 86 VDQTIAAL 93 (503)
Q Consensus 86 v~~vl~~l 93 (503)
+.+-+...
T Consensus 85 ln~~i~~~ 92 (210)
T COG1648 85 LNERIAKA 92 (210)
T ss_pred HHHHHHHH
Confidence 55544333
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.23 Score=51.68 Aligned_cols=123 Identities=14% Similarity=0.142 Sum_probs=68.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|.|||+|.+|..++.+|+..|. +++++|.+.=....+..+-.. ....+..-+....+.+..+ .+++-|...+..-
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~i 120 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI-QPDIRVNALRERL 120 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH-CCCCeeEEeeeec
Confidence 589999999999999999999996 799999885433333221100 0000000111122222222 1455555555421
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
..+.+.++ +..-++|||++-.. ..-..+.+.+...++-++.+.+.|
T Consensus 121 -~~~~~~~~---~~~~DlVid~~Dn~-~~r~~in~~~~~~~iP~v~~~~~g 166 (370)
T PRK05600 121 -TAENAVEL---LNGVDLVLDGSDSF-ATKFLVADAAEITGTPLVWGTVLR 166 (370)
T ss_pred -CHHHHHHH---HhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEec
Confidence 12223333 34458999987653 333334455666787777665543
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.23 Score=49.67 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=55.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEK----GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
++|.|||- ..+|.++|..|.++ +..|+++.... .++.+...+ +|+||.++.
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------------------~nl~~~~~~---ADIvIsAvG 213 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---------------------KNLKKECLE---ADIIIAALG 213 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------------------CCHHHHHhh---CCEEEEccC
Confidence 57999995 78999999999988 46788875321 245566666 999999998
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
-+.-+. ...+++|.+|||.+...
T Consensus 214 kp~~i~------~~~vk~gavVIDvGin~ 236 (293)
T PRK14185 214 QPEFVK------ADMVKEGAVVIDVGTTR 236 (293)
T ss_pred CcCccC------HHHcCCCCEEEEecCcc
Confidence 764322 23578999999998754
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.3 Score=48.47 Aligned_cols=99 Identities=13% Similarity=0.206 Sum_probs=53.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHh-----hcccCCCCeee-eCCHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDR-----AHREGQLPLTG-HYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~-----~~~~g~~~i~~-~~s~~e~~~~l~~~dvIil 78 (503)
.+|.+||.|.+-.+.-.....+ |..|..+|++++..+...+. +... ++.. +.+..++..++...|+|++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~---~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSK---RMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-S---SEEEEES-GGGG-GG----SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccC---CeEEEecchhccccccccCCEEEE
Confidence 4899999999987655444444 45688999999876544321 1111 2333 3344444455666999999
Q ss_pred ecCCC---hhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 79 LVKAG---SPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 79 ~vp~~---~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
+.-.+ ..=.++++.+...+++|..|+--+.
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 87654 2346788999999999998887643
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.081 Score=55.34 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=31.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTT 39 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~ 39 (503)
+.+|.|||.|.+|.++|..|++. |++|+++|+.+
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 46899999999999999999998 99999999875
|
|
| >PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.71 Score=39.33 Aligned_cols=99 Identities=12% Similarity=0.208 Sum_probs=66.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEE-EEecCCC-
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV-IILVKAG- 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvI-il~vp~~- 83 (503)
.+||-|+|-|.++..+.+.+.+.|+++.+.+.+++..... .+. +|-+ ++. +..
T Consensus 2 ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~------------------~~~------ad~~~~~~-~~~~ 56 (110)
T PF00289_consen 2 IKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVSTH------------------VDM------ADEAYFEP-PGPS 56 (110)
T ss_dssp SSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHH------------------HHH------SSEEEEEE-SSSG
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhccccc------------------ccc------cccceecC-cchh
Confidence 4689999999999999999999999988777676542111 111 4444 333 221
Q ss_pred ----hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 84 ----SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 84 ----~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
..++.+++-... .|...+..+-+......++++.+.+.|+.|++.+
T Consensus 57 ~~~yl~~e~I~~ia~~---~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 57 PESYLNIEAIIDIARK---EGADAIHPGYGFLSENAEFAEACEDAGIIFIGPS 106 (110)
T ss_dssp GGTTTSHHHHHHHHHH---TTESEEESTSSTTTTHHHHHHHHHHTT-EESSS-
T ss_pred hhhhccHHHHhhHhhh---hcCcccccccchhHHHHHHHHHHHHCCCEEECcC
Confidence 235555544433 3666777888888888899999999999998753
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A .... |
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.41 Score=46.20 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=53.1
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEE-eCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISVY-NRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 5 ~~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~-dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|+++|-|.|. |.+|..+|+.|+++|++|.+. .|++++.+.+.+... +.-.. ...+..-+.+
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~---~~~~~~Dl~~ 63 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVR--------------AAGGR---ACVVAGDVAN 63 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH--------------hcCCc---EEEEEeccCC
Confidence 3457888874 889999999999999998765 566665544433210 00001 2223333344
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
...++++++++.+.+.+=++||.+...
T Consensus 64 ~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (248)
T PRK06947 64 EADVIAMFDAVQSAFGRLDALVNNAGI 90 (248)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 455666666666555455677776653
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.16 Score=50.87 Aligned_cols=120 Identities=8% Similarity=0.098 Sum_probs=67.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|+|+|-+|..+|++|+..|. +|+++|.+.-....+..+-.-. ...+-..+....+.++++. +++-|......
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN-p~V~V~~~~~~ 97 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-PYVPVTVSTGP 97 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 3589999999999999999999997 6999998764444433211000 0000000111112222221 45555554432
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
... +. +.+=++||++.. .+.....+.+.+.++++.|+.+...|
T Consensus 98 -~~~----~~---l~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G 140 (286)
T cd01491 98 -LTT----DE---LLKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRG 140 (286)
T ss_pred -CCH----HH---HhcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 111 12 223467887754 45555567777788888888775543
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.42 Score=46.36 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=69.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|+|+|.+|+.++.+|++.|. +++++|.+.=....+..+... ....+-.-+....+-+.++ .+++-+...+..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~i-nP~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDI-NPECEVDAVEEF 89 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHH-CCCcEEEEeeee
Confidence 3589999999999999999999997 789998775333333221100 0000000011112222222 155555555432
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg 136 (503)
...+.+..+.. ..-++|||+.-.. .....+.+.+.+.++.++.+.-.|+
T Consensus 90 -i~~~~~~~l~~--~~~D~VvdaiD~~-~~k~~L~~~c~~~~ip~I~s~g~g~ 138 (231)
T cd00755 90 -LTPDNSEDLLG--GDPDFVVDAIDSI-RAKVALIAYCRKRKIPVISSMGAGG 138 (231)
T ss_pred -cCHhHHHHHhc--CCCCEEEEcCCCH-HHHHHHHHHHHHhCCCEEEEeCCcC
Confidence 11222333331 2358999986543 3444567777788888887644443
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.078 Score=53.73 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=29.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
.+|.|||.|.-|..+|..|+++|++|.++++++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 3699999999999999999999999999999875
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.41 Score=49.81 Aligned_cols=114 Identities=16% Similarity=0.204 Sum_probs=66.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh--------HHHHHHHhhcccC----CCCeeeeCCHHHHHhccCCCc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS--------KVDETLDRAHREG----QLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--------~~~~l~~~~~~~g----~~~i~~~~s~~e~~~~l~~~d 74 (503)
++|+|=|.|++|..+|+.|.+.|.+|.+.+-+.. ..+.+.+.....+ ..+.+..+. +++... +||
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~--~cD 284 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEV--DCD 284 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-cccccc--cCc
Confidence 5899999999999999999999999988876655 1111111000000 001222222 444331 388
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+.+=|--.+.-..+.+..|. . ++|+...|.. .+.+..+.+.++|+-|+.
T Consensus 285 Il~PcA~~n~I~~~na~~l~----a-k~V~EgAN~P--~t~eA~~i~~erGIl~~P 333 (411)
T COG0334 285 ILIPCALENVITEDNADQLK----A-KIVVEGANGP--TTPEADEILLERGILVVP 333 (411)
T ss_pred EEcccccccccchhhHHHhh----h-cEEEeccCCC--CCHHHHHHHHHCCCEEcC
Confidence 87766544432223333332 2 3888887764 445566667788987764
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.66 Score=44.93 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=59.6
Q ss_pred EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCC--
Q 010702 32 ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-- 109 (503)
Q Consensus 32 V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~-- 109 (503)
|.+||+++++.+++.+.. ++..+++++++++. ++|.|++|.|+.. ..+..... |..|.-|+-.+..
T Consensus 5 vaV~D~~~e~a~~~a~~~------g~~~~~d~~eLl~~--~vDaVviatp~~~-H~e~a~~a---L~aGkhVl~~s~gAl 72 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERC------GAKIVSDFDEFLPE--DVDIVVEAASQEA-VKEYAEKI---LKNGKDLLIMSVGAL 72 (229)
T ss_pred EEEECCCHHHHHHHHHHh------CCceECCHHHHhcC--CCCEEEECCChHH-HHHHHHHH---HHCCCCEEEECCccc
Confidence 568999999998887753 24578899998752 4999999999964 34444443 3355444445554
Q ss_pred -ChhhHHHHHHHHHhcCccE-ecccCCCC
Q 010702 110 -WYLNTERRIHEASQKGLLY-LGMGVSGG 136 (503)
Q Consensus 110 -~~~~t~~~~~~l~~~gi~~-i~~pvsgg 136 (503)
.....+++.+..++.|..+ +..+-.+|
T Consensus 73 ad~e~~~~l~~aA~~~g~~l~i~sGai~g 101 (229)
T TIGR03855 73 ADRELRERLREVARSSGRKVYIPSGAIGG 101 (229)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEChHHHHH
Confidence 3345666666677766544 44333333
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.12 Score=52.01 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=45.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~~~~l~~~dvIil~vp 81 (503)
|+|.|.| .|.+|..++..|+++|++|.+.+|+++....+...+.. -+.. ..+.+++.+.++.+|+||-+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVE----IVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCce----EEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 4789998 59999999999999999999999987654333211110 0111 1233333333344788877653
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.46 E-value=1.9 Score=43.86 Aligned_cols=42 Identities=26% Similarity=0.530 Sum_probs=33.7
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEE-EEeCChhHHHHHHHh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE-KGFPIS-VYNRTTSKVDETLDR 48 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~-~G~~V~-v~dr~~~~~~~l~~~ 48 (503)
-|||+||+|.||+.|+...++ .|++|. +.||+.+.+.+..+.
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ 61 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDR 61 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHH
Confidence 489999999999999887775 588866 569998887766553
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.45 Score=49.10 Aligned_cols=94 Identities=14% Similarity=0.169 Sum_probs=56.1
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeC---CHHHHHhcc---CCCcEEEEec
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHY---TPRDFVLSI---QRPRSVIILV 80 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~---s~~e~~~~l---~~~dvIil~v 80 (503)
++.|+|+|.+|...++.+...|. +|.+.|+++++++...+.+... ..... ...+.+..+ ..+|++|.|+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 69999999999998888888885 6778899999988766533211 11111 111111111 1378888887
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.... .+...+..++++-.|+-.+..
T Consensus 247 G~~~----~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 247 GSPP----ALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCHH----HHHHHHHHhcCCCEEEEEecc
Confidence 6432 334444445555555444443
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.45 Score=46.33 Aligned_cols=86 Identities=12% Similarity=0.179 Sum_probs=55.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..+|+.|+++|++|++.+|++++.+.+.+... ..-.. ..++-.-+.+...
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~--------------~~~~~---~~~~~~Dl~d~~~ 75 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLE--------------ALGID---ALWIAADVADEAD 75 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--------------hcCCe---EEEEEccCCCHHH
Confidence 4688887 5999999999999999999999999877655443210 00000 2222233444456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++..++++.....+=+.||++...
T Consensus 76 i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 76 IERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 666666666655455777777653
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.43 Score=46.08 Aligned_cols=85 Identities=16% Similarity=0.154 Sum_probs=54.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..+++.|+++|++|.+.+|+++..+.+.+.... .-.. ..++..=+.+...
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~D~~~~~~ 64 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATD--------------AGGS---VIYLVADVTKEDE 64 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---eEEEECCCCCHHH
Confidence 3577887 69999999999999999999999998776665543110 0000 1222222344445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
++.+++.+.+.+.+=++||.+..
T Consensus 65 ~~~~~~~~~~~~~~~d~vi~~a~ 87 (255)
T TIGR01963 65 IADMIAAAAAEFGGLDILVNNAG 87 (255)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66666676665555567776654
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.53 Score=46.67 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=35.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRA 49 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~ 49 (503)
.+|.|+|.|.+|...++.+...|.+ |.+.++++++.+.+.+.+
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~G 165 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFG 165 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC
Confidence 3699999999999999988889987 888899988876655543
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.76 Score=45.98 Aligned_cols=83 Identities=11% Similarity=0.129 Sum_probs=56.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEE--EecCCC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAG 83 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIi--l~vp~~ 83 (503)
++|-|.| .|.+|..+|+.|+++|++|.+.+|++++.+++.+... .. .+++. .=+.+.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~-----------------~~---~~~~~~~~Dv~d~ 69 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELG-----------------GD---DRVLTVVADVTDL 69 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----------------CC---CcEEEEEecCCCH
Confidence 3577777 5999999999999999999999999887766654310 00 22222 334454
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++++++++...+.+=+++|++...
T Consensus 70 ~~v~~~~~~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 70 AAMQAAAEEAVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 56777777776655444777776543
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.15 Score=53.01 Aligned_cols=36 Identities=28% Similarity=0.492 Sum_probs=32.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK 41 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 41 (503)
|++|||||.|..|..|+....+.|++|.++|.+++.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~ 37 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDS 37 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 468999999999999999999999999999988654
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.5 Score=45.20 Aligned_cols=41 Identities=15% Similarity=0.350 Sum_probs=35.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 47 (503)
++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKK 47 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 47888875 889999999999999999999999887766543
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.57 Score=45.35 Aligned_cols=41 Identities=27% Similarity=0.305 Sum_probs=34.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 47 (503)
++|-|.|. |.+|..+|..|++.|++|.+.+|+++..+++.+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVA 49 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 46788875 899999999999999999999999887665543
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.49 Score=45.90 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=34.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 47 (503)
+.+-|.|. |.+|..+++.|++.|++|.+.+|++++.+++.+
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLAD 51 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 34667775 899999999999999999999999887766554
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.37 Score=48.89 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=67.5
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
||.|||+|.+|..++++|+..|. +++++|.+.-....+..+-.- ....+-.-+....+.+..+. +++-+.+....
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lN-p~v~V~~~~~~-- 77 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFN-PNVKIVAYHAN-- 77 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHC-CCCeEEEEecc--
Confidence 68999999999999999999997 689999876544444322100 00000000111122222221 44445444332
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
+.+. ......+..=++||++.-. +..-..+.+.+...++-|++++..|
T Consensus 78 i~~~-~~~~~f~~~~DvVv~a~Dn-~~ar~~in~~c~~~~ip~I~~gt~G 125 (312)
T cd01489 78 IKDP-DFNVEFFKQFDLVFNALDN-LAARRHVNKMCLAADVPLIESGTTG 125 (312)
T ss_pred CCCc-cchHHHHhcCCEEEECCCC-HHHHHHHHHHHHHCCCCEEEEecCc
Confidence 1110 0011223455788887643 3333345667777888899887655
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 503 | ||||
| 2w8z_A | 470 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 1e-145 | ||
| 2w90_A | 471 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 1e-145 | ||
| 2iyo_A | 472 | Structural Characterization Of A Bacterial 6pdh Rev | 1e-135 | ||
| 2iz0_A | 474 | Pex Inhibitor-Home Data Length = 474 | 1e-135 | ||
| 2iyp_A | 473 | Product Rup Length = 473 | 1e-135 | ||
| 3fwn_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 1e-134 | ||
| 2zya_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 1e-133 | ||
| 2zyg_A | 480 | Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenas | 1e-132 | ||
| 1pgn_A | 482 | Crystallographic Study Of Coenzyme, Coenzyme Analog | 1e-128 | ||
| 2jkv_A | 505 | Structure Of Human Phosphogluconate Dehydrogenase I | 1e-126 | ||
| 4gwg_A | 484 | Crystal Structure Analysis Of 6-Phosphogluconate De | 1e-125 | ||
| 2p4q_A | 497 | Crystal Structure Analysis Of Gnd1 In Saccharomyces | 1e-124 | ||
| 1pgj_A | 478 | X-Ray Structure Of 6-Phosphogluconate Dehydrogenase | 8e-77 | ||
| 4e21_A | 358 | The Crystal Structure Of 6-Phosphogluconate Dehydro | 5e-18 | ||
| 2uyy_A | 316 | Structure Of The Cytokine-Like Nuclear Factor N-Pac | 1e-07 | ||
| 3doj_A | 310 | Structure Of Glyoxylate Reductase 1 From Arabidopsi | 5e-07 | ||
| 1wp4_A | 289 | Structure Of Tt368 Protein From Thermus Thermophilu | 9e-07 | ||
| 3cky_A | 301 | Structural And Kinetic Properties Of A Beta-Hydroxy | 3e-05 | ||
| 2cvz_A | 289 | Structure Of Hydroxyisobutyrate Dehydrogenase From | 1e-04 |
| >pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 470 | Back alignment and structure |
|
| >pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 471 | Back alignment and structure |
|
| >pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals Aspects Of Specificity, Mechanism And Mode Of Inhibition Length = 472 | Back alignment and structure |
|
| >pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data Length = 474 | Back alignment and structure |
|
| >pdb|2IYP|A Chain A, Product Rup Length = 473 | Back alignment and structure |
|
| >pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate And 2'-Monophosphoadenosine-5'-Diphosphate Length = 480 | Back alignment and structure |
|
| >pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate Length = 480 | Back alignment and structure |
|
| >pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase Length = 480 | Back alignment and structure |
|
| >pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And Substrate Binding In 6-Phosphogluconate Dehydrogenase: Implications For Nadp Specificity And The Enzyme Mechanism Length = 482 | Back alignment and structure |
|
| >pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In Complex With Nadph At 2.53a Length = 505 | Back alignment and structure |
|
| >pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate Dehydrogenase Apo- Form Length = 484 | Back alignment and structure |
|
| >pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces Cerevisiae Length = 497 | Back alignment and structure |
|
| >pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From The Protozoan Parasite T. Brucei Length = 478 | Back alignment and structure |
|
| >pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase From Geobacter Metallireducens Length = 358 | Back alignment and structure |
|
| >pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316 | Back alignment and structure |
|
| >pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310 | Back alignment and structure |
|
| >pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301 | Back alignment and structure |
|
| >pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 503 | |||
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 0.0 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 0.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 0.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 0.0 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 0.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 1e-130 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 1e-20 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 1e-20 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 2e-20 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 3e-20 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 3e-20 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 5e-20 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 4e-19 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 6e-19 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 2e-18 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 3e-18 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 6e-18 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 7e-18 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 8e-18 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 2e-16 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 3e-15 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 3e-12 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 4e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 |
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482 | Back alignment and structure |
|---|
Score = 816 bits (2110), Expect = 0.0
Identities = 244/478 (51%), Positives = 321/478 (67%), Gaps = 11/478 (2%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A + I L GLAVMGQNL LN+ + GF + +NRT SKVD+ L A+ + G ++
Sbjct: 1 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVLGAHSLE 58
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
+ V +++PR +I+LVKAG VD I L + GD IIDGGN Y +T RR + K
Sbjct: 59 EMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDK 118
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGS 183
G+L++G GVSGGE+GAR+GPSLMPGG+ EA+ +I+ I Q +AA+V G PC ++G+ G+
Sbjct: 119 GILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGA 178
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243
G+FVKMVHNGIEYGDMQLI EAY ++K V GL + E+A+ F+EWNK EL+SFL+EITA I
Sbjct: 179 GHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASI 238
Query: 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE 303
K +D G+ L+ KI D G KGTGKWT A E V I ++ R LS LK+ER
Sbjct: 239 LKFQDADGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERI 297
Query: 304 KAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 363
+A+K LK QN+ DKK ++D+R+ALYASKI SYAQG LLR + E GW
Sbjct: 298 QASKKLKGP------QNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWT 351
Query: 364 LNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423
LN+G +A +W+GGCIIR+VFL +IK A+ RNP L +L++D F + Q +WRR +
Sbjct: 352 LNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAIST 411
Query: 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSF-HTEWT 480
+ AGI P +LS++D YR A LPANL+QAQRD FGAHTYE + +PG F HT WT
Sbjct: 412 GVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWT 469
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474 | Back alignment and structure |
|---|
Score = 815 bits (2108), Expect = 0.0
Identities = 235/479 (49%), Positives = 322/479 (67%), Gaps = 12/479 (2%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A + G+ G+AVMG+NLALNV +G+ +++YNRTTSK +E + L T
Sbjct: 4 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKN---LVFTKTLE 60
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
+FV S+++PR ++++V+AG+ D TI +L + GD +IDGGN + +T RR E +
Sbjct: 61 EFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADS 120
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV--DDGPCVTYIGEGG 182
G+ ++G GVSGGE+GA GPS+MPGG EAY+ + I +++AA+ D PCV Y+G G
Sbjct: 121 GINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANG 180
Query: 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242
+G++VKMVHNGIEYGDMQLI+E+YD+LK + GLSNAE+ IF+EWN+GEL+S+L+EIT +
Sbjct: 181 AGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKE 240
Query: 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEER 302
+ K KD+ GEG +VDKILDK G KGTGKWT + A +L V P I S+ RY+S K+ER
Sbjct: 241 VLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDER 300
Query: 303 EKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGW 362
KA+KVL L DKK +I+ +R+ALY SKI SYAQG LR S E W
Sbjct: 301 VKASKVLSGPALDFSG-------DKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDW 353
Query: 363 NLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVG 422
+L +G +A+IW+ GCIIRA FL I A+ ++ L +L++D F + Q A R VV
Sbjct: 354 DLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVS 413
Query: 423 LAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481
LA+ AG P +++SY+D+YR LPANL+QAQRD FGAHTYER D+ G FH +W
Sbjct: 414 LAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWYT 472
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480 | Back alignment and structure |
|---|
Score = 814 bits (2106), Expect = 0.0
Identities = 237/476 (49%), Positives = 318/476 (66%), Gaps = 12/476 (2%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
+ +IG+ G+AVMG+NLALN+ +G+ +S++NR+ K +E + + L +YT +
Sbjct: 14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGK---KLVPYYTVK 70
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
+FV S++ PR ++++VKAG+ D I +L ++ GD IIDGGN ++ +T RR E S +
Sbjct: 71 EFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAE 130
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGS 183
G ++G GVSGGEEGA GPS+MPGG EAY + IL K+AA +DG PCVTYIG G+
Sbjct: 131 GFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGA 190
Query: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243
G++VKMVHNGIEYGDMQLI+EAY +LK L+N ELA+ F EWN GEL S+L++IT DI
Sbjct: 191 GHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDI 250
Query: 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERE 303
F KDE G LVD ILD+ KGTGKWT Q A +L I S+ RY+S LK++R
Sbjct: 251 FTKKDEDGN-YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRV 309
Query: 304 KAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWN 363
A+KVL + DK I+ VR+ALY KI SYAQG + LR+ S E W+
Sbjct: 310 AASKVLSGPQAQPAG-------DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWD 362
Query: 364 LNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 423
LN+GE+A+I++ GCIIRA FL +I A NP +A+L++ P F + Q A R VV
Sbjct: 363 LNYGEIAKIFRAGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAY 422
Query: 424 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEW 479
A+ GI P A+++Y+D+YR A LPANL+QAQRD FGAHTY+RID+ G FHTEW
Sbjct: 423 AVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW 478
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 805 bits (2081), Expect = 0.0
Identities = 231/488 (47%), Positives = 316/488 (64%), Gaps = 16/488 (3%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH 60
+ GL GLAVMGQNL LN A+ GF + YNRT SKVD L + + G
Sbjct: 5 HHHHMSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGK--SIIGA 62
Query: 61 YTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHE 120
+ DF+ ++RPR V++LVKAG+PVD I + + GD IIDGGN + ++ RR E
Sbjct: 63 TSIEDFISKLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEE 122
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
+KG+L++G GVSGGEEGAR+GPSLMPGGS EA+ +I++I Q ++A+ D PC ++G
Sbjct: 123 LKKKGILFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQSISAKSDGEPCCEWVGP 182
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240
G+G++VKMVHNGIEYGDMQLI EAYD++K +GG ++ E++++F +WN G L+SFLVEIT
Sbjct: 183 AGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEIT 242
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
DI K D G+ LV+KI+D G KGTGKWT A +L + I ++ R LS LK
Sbjct: 243 RDILKFDDVDGK-PLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKN 301
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ER +A+KVL + + D+++ +DD+ QALYASKI SYAQG L+R +
Sbjct: 302 ERIRASKVLPGPEVPKDAV-----KDREQFVDDLEQALYASKIISYAQGFMLIREAAATY 356
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
GW LN +A +W+GGCIIR+VFL +I KAY+ P+L +L+ + FA + + Q+ WR+
Sbjct: 357 GWKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKFFADAVTKAQSGWRKS 416
Query: 421 VGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGS------ 474
+ LA + GI TP +LS++D YR RLPANL+QAQRD FGAHT+ + S
Sbjct: 417 IALATTYGIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVD 476
Query: 475 --FHTEWT 480
H WT
Sbjct: 477 KDIHINWT 484
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 | Back alignment and structure |
|---|
Score = 768 bits (1986), Expect = 0.0
Identities = 168/479 (35%), Positives = 260/479 (54%), Gaps = 10/479 (2%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLP-LTGHYTPRDFV 67
+G+ GL VMG NLALN+AEKGF ++V+NRT SK +E + L T F
Sbjct: 4 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFA 63
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
S+++PR +ILV+AG+ D TI L + GD ++D GN + + RR + GL
Sbjct: 64 ASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR 123
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 186
+LGMG+SGGEEGAR GP+ PGG+ + IR I++ AA+ DDG PCVT G GG+G+
Sbjct: 124 FLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSC 183
Query: 187 VKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEW-NKGELESFLVEITADIFK 245
VKM HN EY +Q+ E +D+L+ + GL+N E+A + ++W +K L+S++++I+ +
Sbjct: 184 VKMYHNSGEYAILQIWGEVFDILRAM-GLNNDEVAAVLEDWKSKNFLKSYMLDISIAAAR 242
Query: 246 VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKA 305
KD+ G L + ++D+ G KGTG W+ Q+A E+ V AP++ ++ R + K ER+
Sbjct: 243 AKDKDGS-YLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQAN 301
Query: 306 AKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLN 365
A I + ++ + I YAQ LR + LN
Sbjct: 302 ASNAPGITQSPGYTLKNKS-PSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLN 360
Query: 366 FGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA- 424
++ GCI++ L + +A+++NPN+++L+ F E+ +R +V L
Sbjct: 361 LPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMCA--FQTEIRAGLQNYRDMVALIT 418
Query: 425 ISAGISTPGMCASLSYFDTYRRARLP-ANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482
+S P + ASL+Y L LV QRD+FG H YER+D+ G +W +L
Sbjct: 419 SKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQWPEL 477
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
Score = 381 bits (980), Expect = e-130
Identities = 87/345 (25%), Positives = 155/345 (44%), Gaps = 53/345 (15%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG+ GL MG ++ + + G VY+ + V REG + G + +F
Sbjct: 24 QIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQA----LEREG---IAGARSIEEFC 76
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
+ +PR V ++V A VD + ++ ++ D +IDGGN Y + RR + +G+
Sbjct: 77 AKLVKPRVVWLMVPAA-VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGIT 135
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT----------- 176
Y+ +G SGG G G LM GG +A + + + +A + P
Sbjct: 136 YVDVGTSGGIFGLERGYCLMIGGEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAEL 195
Query: 177 ---YIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA--------------- 218
+ G G+G+FVKMVHNGIEYG M +E ++L H
Sbjct: 196 GYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDF 255
Query: 219 -----ELAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWT 272
+LA+I + W +G + S+L++++A + + + + G G+WT
Sbjct: 256 YRYDLDLADITEVWRRGSVISSWLLDLSATALLDSPD------LQEFQGRVSDSGEGRWT 309
Query: 273 VQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDE 317
V A + V A ++++L R+ S +++ A ++L + ++ E
Sbjct: 310 VAAAIDEGVPAHVLSSALYERFSSRGEDDF--ANRLL--SAMRYE 350
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 1e-20
Identities = 41/209 (19%), Positives = 78/209 (37%), Gaps = 34/209 (16%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG GL +MG + N+ + G ++V+NRT K D + R G+ TP + V
Sbjct: 32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGR-------TPAEVV 84
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT------ERRI 118
V + + + + PG C +D + +
Sbjct: 85 ---STCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVD-------MSTVDADTVTEL 134
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
+ +G +L VSG ++ + G ++ G Y + Q + G
Sbjct: 135 AQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAM------GKTSF 188
Query: 177 YIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
++GE G+ + ++ N ++ M I+E
Sbjct: 189 FLGEVGNAAKMMLIVNMVQGSFMATIAEG 217
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 1e-20
Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 34/210 (16%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+ G GL +MG +A N+ GF ++V+NR +K + R+ +P +
Sbjct: 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQAS-------SPAEV 54
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT------ERR 117
I ++ + + + E + G ID +
Sbjct: 55 C---AACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYID-------MSTVDDETSTA 104
Query: 118 IHE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCV 175
I + +G +L VSG ++ A G ++ G + + + G
Sbjct: 105 IGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAAL------GKKC 158
Query: 176 TYIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
++GE G G +K+V N I M + E
Sbjct: 159 LHLGEVGQGARMKLVVNMIMGQMMTALGEG 188
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 44/215 (20%), Positives = 88/215 (40%), Gaps = 34/215 (15%)
Query: 2 EASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY 61
S + +G GL +MG+ +++N+ + GF ++V+NRT SK DE ++ +
Sbjct: 17 RGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCE------- 69
Query: 62 TPRDFVLSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT---- 114
+P + + ++ + I ++ + + E + G ID +
Sbjct: 70 SPAEVI---KKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYID-------MSTVDA 119
Query: 115 --ERRIHE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVD 170
+I+E + KG ++ VSG ++ A G ++ G + +
Sbjct: 120 ETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVL----- 174
Query: 171 DGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
G Y+G+ G+G +K++ N I M SE
Sbjct: 175 -GKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEG 208
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 3e-20
Identities = 41/209 (19%), Positives = 79/209 (37%), Gaps = 34/209 (16%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+ G GL +MG +A N+ + G ++++NR+ K +E TP + V
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAA-------TPCEVV 55
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT------ERRI 118
+ ++ + ++ + E + G +D + +RI
Sbjct: 56 ---ESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVD-------MSTVDPATSQRI 105
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
KG +L VSG ++ A G ++ G Y+ +K+ G +
Sbjct: 106 GVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKM------GKKII 159
Query: 177 YIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
++G+ G G +K+V N + G M E
Sbjct: 160 HLGDVGKGAEMKLVVNMVMGGMMACFCEG 188
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 3e-20
Identities = 45/209 (21%), Positives = 86/209 (41%), Gaps = 34/209 (16%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL +MG+ ++ N+ + G+ + V +R + + + G T +
Sbjct: 7 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA----AG---AETASTAKAIA 59
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT------ERRI 118
++ +I ++ V + + E PG +ID + R I
Sbjct: 60 ---EQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLID-------MSSIAPLASREI 109
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
+ KG+ L VSGGE A G S+M GG ++ D+++ + V
Sbjct: 110 SDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAM------AGSVV 163
Query: 177 YIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
+ G+ G+GN K+ + I ++ +SEA
Sbjct: 164 HTGDIGAGNVTKLANQVIVALNIAAMSEA 192
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 5e-20
Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 34/209 (16%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+I G MG +A + E G+ + V+NRT ++ H R
Sbjct: 32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGAT-------IHEQARAA 84
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAA--LSEHMSPGDCIIDGGNEWYLNT------ERRI 118
+ V+ +++ G+ V + A ++ M PG +D R
Sbjct: 85 A---RDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLD-------MASITPREARDH 134
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
G+ +L VSGG GA G +M GG + +L+ T
Sbjct: 135 AARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGR-------AT 187
Query: 177 YIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
++G GSG K+ + I + ++EA
Sbjct: 188 HVGPHGSGQLTKLANQMIVGITIGAVAEA 216
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 4e-19
Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 35/209 (16%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL +MG +A+N+A G + V + A T R
Sbjct: 5 KLGFIGLGIMGSPMAINLARAGHQLHVTTIGPVADELLSLGA--------VNVETARQVT 56
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT------ERRI 118
+ + I+V V+ + ++ G I+D + +R
Sbjct: 57 ---EFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVD-------MSSISPIETKRF 106
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
+ ++ G YL VSGGE GAR G S+M GG + ++ ++ + + G +T
Sbjct: 107 AQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDIL------GKNIT 160
Query: 177 YIGEGGSGNFVKMVHNGIEYGDMQLISEA 205
+G G G K+ + I +++ +SEA
Sbjct: 161 LVGGNGDGQTCKVANQIIVALNIEAVSEA 189
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 6e-19
Identities = 47/224 (20%), Positives = 75/224 (33%), Gaps = 33/224 (14%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL MG +A + E ++VY+ + G T + D
Sbjct: 17 KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTP----LAEAG---ATLADSVADVA 69
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL------NTERRIHE- 120
+ I V + V + + L+ H PG I T +
Sbjct: 70 ----AADLIHITVLDDAQVREVVGELAGHAKPGTVIAI-------HSTISDTTAVELARD 118
Query: 121 ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIG 179
+ + + VSGG A G + M G E Y I+ + AA V + G
Sbjct: 119 LKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAV------VIHAG 172
Query: 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
E G+G +K+ N + + EA L GL L +
Sbjct: 173 EPGAGTRMKLARNMLTFTSYAAACEAM-KLAEAAGLDLQALGRV 215
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 2e-18
Identities = 33/236 (13%), Positives = 72/236 (30%), Gaps = 34/236 (14%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTG 59
+ S + + GL MG +A + ++G ++++NR+ K + AH
Sbjct: 4 SDESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCE------ 57
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALS-EHMSPGDCIIDGGNEWYLNT---- 114
+ + + + I ++ + + I+D T
Sbjct: 58 --SVKAAL---SASPATIFVLLDNHATHEVLGMPGVARALAHRTIVD------YTTNAQD 106
Query: 115 -ERRIHE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDD 171
+ +Q G Y+ + H + G EA+ R +L+ +
Sbjct: 107 EGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGL------ 160
Query: 172 GPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEW 227
++ + V + + M EA GL ++ A + E
Sbjct: 161 AGHTVFLPWDEALA-FATVLHAHAFAAMVTFFEAV-GAGDRFGLPVSKTARLLLET 214
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 3e-18
Identities = 53/225 (23%), Positives = 87/225 (38%), Gaps = 35/225 (15%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
++ GL MG +A ++A + + V+NRT K + P +
Sbjct: 2 EKVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEF--------GSEAVPLER 52
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT------ERRIHE 120
V R + + V + AL ++ G +D T RR+ E
Sbjct: 53 V---AEARVIFTCLPTTREVYEVAEALYPYLREGTYWVD-------ATSGEPEASRRLAE 102
Query: 121 -ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYI 178
+KG+ YL VSGG GA G ++M GG EA +R L V ++
Sbjct: 103 RLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLAY-------AKKVVHV 155
Query: 179 GEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
G G+G+ VK ++N + ++ E L G+S + E+
Sbjct: 156 GPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQ-GVSAEKALEV 199
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 7e-18
Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 34/210 (16%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+G+ GL MG A + G + L EG + R+F
Sbjct: 9 HVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLA----EGACGAAA--SAREFA 62
Query: 68 LSIQRPRSVIILVKAGSPVDQTI---AALSEHMSPGDCIIDGGNEWYLNT------ERRI 118
+++ILV + V Q + ++ M PG ++ ++ + I
Sbjct: 63 ---GVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMV-------SSTISSADAQEI 112
Query: 119 HE-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVT 176
+ L L VSGG A G ++M GS A+ ++ +L VA+ V
Sbjct: 113 AAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASN------VY 166
Query: 177 YIGE-GGSGNFVKMVHNGIEYGDMQLISEA 205
I + G+G+ VK++H + + +EA
Sbjct: 167 RISDTPGAGSTVKIIHQLLAGVHIAAAAEA 196
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 8e-18
Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 33/226 (14%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG GL MG+ +A+N+ ++G + ++ + V + +G +
Sbjct: 6 KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVA----QG---AQACENNQKVA 58
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT-----ERRIH 119
+ + V+ + + G I+D +++ ++
Sbjct: 59 ---AASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVD------MSSVSPSSTLKMA 109
Query: 120 E-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTY 177
+ A++KG+ Y+ VSGG +GA G ++M G S + I+ +L + + +
Sbjct: 110 KVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKD------IYH 163
Query: 178 IGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
+G+ G+G+ VK+V+N + +M ++EA VL GL + EI
Sbjct: 164 VGDTGAGDAVKIVNNLLLGCNMASLAEAL-VLGVKCGLKPETMQEI 208
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 2e-16
Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 33/226 (14%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+G GL MG +A N+ + G+P+ +Y+ E G +P D
Sbjct: 2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKE----FQDAG---EQVVSSPADVA 54
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAA---LSEHMSPGDCIIDGGNEWYLNT-----ERRIH 119
++ +I ++ + + + + + G +ID +T + +
Sbjct: 55 ---EKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDS------STIDPAVSKELA 105
Query: 120 E-ASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTY 177
+ + G +++ VSGG AR G + M GG + + +++L + + V Y
Sbjct: 106 KEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSN------VVY 159
Query: 178 IGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
G G+G K+ +N + M +EA L GL LA+I
Sbjct: 160 CGAVGTGQAAKICNNMLLAISMIGTAEAM-NLGIRLGLDPKLLAKI 204
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 3e-15
Identities = 34/233 (14%), Positives = 73/233 (31%), Gaps = 35/233 (15%)
Query: 1 MEASALSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTG 59
+++A+ ++G G +A + + G ++ Y+ +++ RA G ++
Sbjct: 20 FQSNAM-KLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAE--SWRPRAEELG---VSC 73
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT----- 114
+ + VI + + H+ G D +
Sbjct: 74 KASVAEVA----GECDVIFSLVTAQAALEVAQQAGPHLCEGALYAD------FTSCSPAV 123
Query: 115 ERRIHE---ASQKGLLYLGMGVSGGEEGARHG-PSLMPGGSFEAYNNIRDILQKVAAQVD 170
+R I + + Y + V + H P ++ G + ++
Sbjct: 124 KRAIGDVISRHRPSAQYAAVAVMSAVKPHGHRVPLVVDGDGARR---FQAAFTLYGCRI- 179
Query: 171 DGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
GE G +KM + + G L EA GL++ LA +
Sbjct: 180 ----EVLDGEVGGAALLKMCRSAVLKGLEALFLEAL-AAAEKMGLADRVLASL 227
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 3e-12
Identities = 34/231 (14%), Positives = 72/231 (31%), Gaps = 34/231 (14%)
Query: 4 SALSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKV---DETLDRAHREGQLPLTG 59
S ++ I G Q++A + + ++ Y+ + RA G PL
Sbjct: 22 SMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLD- 80
Query: 60 HYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT----- 114
++ V++ + G+ A+ + H+S ID LN+
Sbjct: 81 -------DVAGIACADVVLSLVVGAATKAVAASAAPHLSDEAVFID------LNSVGPDT 127
Query: 115 ERRIHE-ASQKGLLYLGMGVSGGEEGARHG-PSLMPGGSFEAYNNIRDILQKVAAQVDDG 172
+ + ++ V P L+ G + + L + +
Sbjct: 128 KALAAGAIATGKGSFVEGAVMARVPPYAEKVPILVAGRRAVE---VAERLNALGMNL--- 181
Query: 173 PCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
G + +KM+ + + G L+ EA G++ L +
Sbjct: 182 --EAVGETPGQASSLKMIRSVMIKGVEALLIEAL-SSAERAGVTERILDSV 229
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 4e-07
Identities = 33/223 (14%), Positives = 58/223 (26%), Gaps = 38/223 (17%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR--- 64
R+G G + Q LA + +G + S R T
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVG-------VTETSEEDV 54
Query: 65 ---DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEA 121
V+S P + + + I ++SP T R
Sbjct: 55 YSCPVVISAVTPGVALGAARRAGRHVRGIYVDINNISPE-------------TVRMASSL 101
Query: 122 SQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIG-E 180
+ ++ + G ++ G + G + G E
Sbjct: 102 -IEKGGFVDAAIMGSVRRKGADIRIIASGRDAE---------EFMKLNRYGLNIEVRGRE 151
Query: 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEI 223
G + +KM+ + G L+ E H GL L +
Sbjct: 152 PGDASAIKMLRSSYTKGVSALLWETL-TAAHRLGLEEDVLEML 193
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 5e-07
Identities = 73/540 (13%), Positives = 149/540 (27%), Gaps = 177/540 (32%)
Query: 1 MEASALSRIGLAGLAVMG-QNLALNVA-----EKGFPISVY-----------------NR 37
+E + + G+ G +AL+V + ++ +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 38 TTSKVDETL-DRAHREGQLPLTGH---YTPRDFVLSIQRPRSVIIL--VKAGSPVDQTIA 91
++D R+ + L H R + S +++L V+ +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-----NAKAW 259
Query: 92 ALSEHMSPGDCII-----DGGNEWYLNTERRIH-----------EASQKGLL--YLGMGV 133
+ C I +L+ H K LL YL
Sbjct: 260 ---NAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 134 SG-GEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN 192
E P L +A + DG T+ N+ + +
Sbjct: 316 QDLPREVLTTNPRR---------------LSIIAESIRDGLA-TW------DNWKHVNCD 353
Query: 193 GIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFL--VEITADIFKV---- 246
+ +I + +VL+ AE ++FD L F I + +
Sbjct: 354 KLT----TIIESSLNVLE------PAEYRKMFD-----RLSVFPPSAHIPTILLSLIWFD 398
Query: 247 KDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAA 306
+ +V+K+ + ++ +Q E +++ P S+ L+ E
Sbjct: 399 VIKSDVMVVVNKLHKYSLVE-------KQPKESTISIP----SIYLELKVKLENEYALHR 447
Query: 307 KVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSY----------AQGMNLLRSK 356
++ + + + +D Y S+ + M L R
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPY---LDQ-----Y---FYSHIGHHLKNIEHPERMTLFRM- 495
Query: 357 SNEKGWNLNFGEL-ARI------WKGGCIIRAVFLD-RIKKAY--QRNPNLASLVVD--- 403
L+F L +I W I + K Y +P LV
Sbjct: 496 -----VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 404 --PEFAREMVQRQAAWRRVVGLAISA---GISTPGMCASLSYFDTYRRARLPANLVQAQR 458
P+ ++ + + ++ +A+ A I + + ++ Q QR
Sbjct: 551 FLPKIEENLI--CSKYTDLLRIALMAEDEAI----------FEEAHK---------QVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 54/421 (12%), Positives = 128/421 (30%), Gaps = 141/421 (33%)
Query: 156 NNIRDILQKV--AAQVDD----GPCVTYI----------GEGGSGNFVKMVHN------- 192
+++D+ + + ++D V+ E FV+ V
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 193 ---GIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDE 249
E +++ Y ++ L N ++F ++N L+ +L ++ + +++
Sbjct: 96 SPIKTEQRQPSMMTRMY--IEQRDRLYND--NQVFAKYNVSRLQPYL-KLRQALLELRPA 150
Query: 250 YGEGELVDKILDKTGMKGTGKWTVQQAAE-----------------LSVAAPTIAASL-- 290
+ L+D G+ G+GK V A + L++ ++
Sbjct: 151 --KNVLID------GVLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 291 ---------DCRYLSG----------LKEEREKAAKVLKEAGLK------DEVQNVGVHV 325
D + S + + + ++LK + VQN
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN----- 255
Query: 326 DKKRLID--DVR-QALYASKICSYAQGMNLLRSK---SNEKGWNLNFGELARIWKGGCII 379
+ + ++ + L ++ ++ + + L E+ +
Sbjct: 256 --AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL------ 307
Query: 380 RAVFLD-RIKK----AYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGM 434
+LD R + NP S++ E R+ + W+ V ++ I
Sbjct: 308 -LKYLDCRPQDLPREVLTTNPRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIE---- 360
Query: 435 CASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKLPARLVPVLSSNK 494
+SL+ + PA + L + P +P L+ ++
Sbjct: 361 -SSLNVLE-------PAEYRKMFDRLS-------VFPPS------AHIPTILLSLI---- 395
Query: 495 W 495
W
Sbjct: 396 W 396
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 503 | |||
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 100.0 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 100.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 100.0 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 100.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 100.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 100.0 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 100.0 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 100.0 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 100.0 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 100.0 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.98 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.97 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.97 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.97 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.97 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.96 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.95 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.94 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.94 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.93 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.93 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.92 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.92 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.92 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.91 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.91 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.89 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.89 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.87 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.87 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.86 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.84 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.84 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.83 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.83 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.82 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.82 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.82 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.82 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.82 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.82 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.8 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.79 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.78 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.77 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.77 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.76 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.76 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.76 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.74 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.74 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.71 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.71 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.71 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.7 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.69 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.69 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.68 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.68 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.67 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.66 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.48 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.65 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.65 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.65 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.65 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.64 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.64 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.63 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.62 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.62 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.58 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.52 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.51 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.5 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.46 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.45 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.42 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.38 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 99.33 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.3 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.27 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.27 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.25 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.25 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.23 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.22 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 99.22 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.21 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.19 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.18 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.18 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.18 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.17 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.16 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.16 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.15 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.14 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.14 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.13 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.13 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.13 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.13 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.13 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.12 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.11 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.09 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 99.08 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.07 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 99.05 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 99.03 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.03 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.02 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.0 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.97 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.96 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.95 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.91 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.9 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.88 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.86 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.85 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.79 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.73 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.72 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.71 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.69 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.68 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.68 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.68 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.67 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.65 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.64 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.59 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.59 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.58 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.58 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.58 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.57 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.56 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.56 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.53 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.52 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.51 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.51 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.51 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.5 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.5 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.49 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.48 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.48 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 98.48 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.47 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.47 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.44 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.43 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.42 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 98.42 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.41 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.4 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.4 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.39 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.38 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.38 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.38 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.38 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.37 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.36 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.36 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 98.35 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.34 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 98.32 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.32 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.31 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.3 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.27 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 98.27 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.26 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.25 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.25 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.23 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.23 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.23 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.21 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.2 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.2 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.2 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.19 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.19 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.18 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.18 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.17 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.16 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 98.15 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.15 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.14 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 98.13 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 98.13 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 98.1 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 98.08 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.08 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.07 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.05 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.05 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.04 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 98.04 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 98.03 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 98.02 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 98.02 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 98.01 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 98.01 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.0 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.99 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.99 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 97.99 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.98 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.97 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.97 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.97 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.97 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.97 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 97.97 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.96 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.95 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 97.95 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.94 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.94 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.93 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.92 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.91 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.88 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.88 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.88 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.87 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.86 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.85 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.85 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.84 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.82 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.82 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.82 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 97.82 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.81 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.81 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.81 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 97.74 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.72 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.72 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.71 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.71 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.71 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 97.71 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 97.68 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.67 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.67 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.67 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.66 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.66 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.64 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 97.62 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.62 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.6 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 97.59 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.59 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.59 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.58 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.55 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.54 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.51 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.5 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.5 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.49 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.48 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.46 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 97.45 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.42 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.36 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.35 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 97.35 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.35 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.35 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.31 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.3 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.3 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.29 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 97.29 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.27 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.27 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.27 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 97.26 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.23 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 97.14 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.1 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.06 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.05 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.02 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.01 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 96.99 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 96.96 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.93 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.9 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.89 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.89 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.89 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.88 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.87 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.87 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 96.85 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.84 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.82 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.81 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.8 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.76 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.75 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 96.72 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.69 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.68 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.67 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.67 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.65 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.63 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.6 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.59 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 96.57 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.54 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 96.54 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.51 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.48 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 96.46 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.44 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.43 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.39 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 96.37 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.34 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.33 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.3 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 96.29 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.27 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.26 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 96.22 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.21 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.19 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.16 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.05 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 96.02 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.01 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 95.98 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 95.96 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 95.96 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 95.95 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 95.94 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 95.92 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.9 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 95.89 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 95.89 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 95.87 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 95.87 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.85 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 95.84 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 95.84 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 95.84 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 95.83 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.83 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.79 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 95.76 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 95.72 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 95.7 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 95.67 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 95.67 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 95.62 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 95.6 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 95.6 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 95.59 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 95.59 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 95.57 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 95.56 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.56 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 95.52 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 95.51 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 95.51 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 95.49 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 95.48 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 95.47 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.46 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 95.45 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 95.44 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 95.43 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 95.42 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 95.42 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 95.41 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 95.36 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 95.36 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 95.36 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 95.34 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.34 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 95.33 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 95.33 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 95.28 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 95.26 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 95.24 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 95.16 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.14 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.14 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.13 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 95.13 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 95.12 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.12 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 95.03 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 95.03 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 95.02 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 95.01 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 95.01 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 94.98 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 94.98 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 94.97 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 94.97 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 94.97 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 94.97 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 94.96 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 94.94 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 94.93 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 94.92 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 94.92 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 94.92 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 94.91 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 94.89 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.88 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 94.88 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 94.88 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 94.86 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 94.86 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 94.84 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.84 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 94.8 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 94.8 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 94.79 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 94.78 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 94.78 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 94.77 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 94.76 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 94.75 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 94.73 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 94.72 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 94.72 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 94.72 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 94.69 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 94.68 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 94.68 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 94.68 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 94.68 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 94.67 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 94.67 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 94.65 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 94.65 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 94.65 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 94.62 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 94.62 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 94.61 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 94.6 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 94.58 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 94.51 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 94.49 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 94.49 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 94.48 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 94.44 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 94.44 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 94.42 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.41 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 94.41 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 94.38 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 94.38 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 94.38 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 94.37 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 94.35 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 94.35 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 94.34 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 94.34 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 94.31 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 94.31 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 94.3 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.29 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 94.27 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 94.27 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 94.27 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 94.26 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 94.25 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.25 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 94.24 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 94.22 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 94.2 |
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-112 Score=898.61 Aligned_cols=470 Identities=50% Similarity=0.860 Sum_probs=439.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+|+|||||+|.||.+||++|+++||+|++|||++++++.+.+.+... .++..+.+++++++.|+.+|+||+|||++.+
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g--~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~ 81 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKG--TKVVGAQSLKEMVSKLKKPRRIILLVKAGQA 81 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTT--SSCEECSSHHHHHHTBCSSCEEEECSCSSHH
T ss_pred CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCC--CceeccCCHHHHHhhccCCCEEEEecCChHH
Confidence 46899999999999999999999999999999999999988764221 1356678999999977789999999999889
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~i 165 (503)
++++++++.+.+.+|++|||+||+.+.++.++.+.+.++|++|+++||+||++++++|+++|+||+++++++++++|+.+
T Consensus 82 v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~~im~GG~~ea~~~v~pll~~i 161 (484)
T 4gwg_A 82 VDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGI 161 (484)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCCeeecCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccc-CCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHhccCCcchhHHhhhhhh
Q 010702 166 AAQV-DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH-VGGLSNAELAEIFDEWNKGELESFLVEITADI 243 (503)
Q Consensus 166 g~~~-~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~-~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~ 243 (503)
+.++ ++++|+.|+|+.|+||++||+||++++++|++++|++.++++ .| ++++++.++|..|+.|.++||+++++.++
T Consensus 162 g~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~G-ld~~~l~~v~~~w~~G~~~S~l~e~~~~~ 240 (484)
T 4gwg_A 162 AAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLG-MAQDEMAQAFEDWNKTELDSFLIEITANI 240 (484)
T ss_dssp SCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHTTTTTCBHHHHHHHHH
T ss_pred cCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHcCCCccchHHHHHHHH
Confidence 9987 677899999999999999999999999999999999999999 87 99999999999999999999999999999
Q ss_pred ccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCccccccccc
Q 010702 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGV 323 (503)
Q Consensus 244 l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~ 323 (503)
+..+| +.+++.+|.|+|.++|||||+|++++|.++|||+|+|.+||++|++|++|++|..+++.+++|.+. ..
T Consensus 241 l~~~D-~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S~~k~~r~~a~~~l~~~~~~------~~ 313 (484)
T 4gwg_A 241 LKFQD-TDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKF------QF 313 (484)
T ss_dssp HHCBC-TTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHTTCCCC--C------CC
T ss_pred HhcCC-ccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHhhchHHHHHHHhhcCCCCcc------cc
Confidence 98755 456799999999999999999999999999999999999999999999999999999999877421 23
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcch
Q 010702 324 HVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVD 403 (503)
Q Consensus 324 ~~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~ 403 (503)
..+..+|++||||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++|||+|
T Consensus 314 ~~~~~~~~~~~~~al~~~~i~~yaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~ll~~ 393 (484)
T 4gwg_A 314 DGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLD 393 (484)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSTTCTTCBHHHHHHHHHHHHCTTCSCGGGS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHccCceeHHHHHHHHHHHHHhCCCchhhhcC
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCCc-ccccccCC
Q 010702 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGS-FHTEWTKL 482 (503)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~~-~h~~w~~~ 482 (503)
+.|.+.+++.+++||+||..|++.|||+|++|+||+||++||++++|+|||||||||||+|||+|+|++|. ||++|++.
T Consensus 394 ~~f~~~~~~~~~~~r~vv~~a~~~gip~P~~s~al~y~~~~r~~~lpanliqaqRd~FGaH~~~r~d~~g~~~h~~w~~~ 473 (484)
T 4gwg_A 394 DFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGH 473 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHCCCEEETTEEEEEECCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhCCcceEecCCCCCccccCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995 89999864
Q ss_pred CCC
Q 010702 483 PAR 485 (503)
Q Consensus 483 ~~~ 485 (503)
+.+
T Consensus 474 ~~~ 476 (484)
T 4gwg_A 474 GGT 476 (484)
T ss_dssp ---
T ss_pred CCC
Confidence 333
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-103 Score=837.00 Aligned_cols=469 Identities=49% Similarity=0.863 Sum_probs=434.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-hhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-RAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
|..+|||||+|.||.+||++|+++||+|++|||++++++++.+ ..... ++..+.+++++++.|+++|+||+|||++
T Consensus 9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~---gi~~~~s~~e~v~~l~~aDvVil~Vp~~ 85 (497)
T 2p4q_A 9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGK---SIIGATSIEDFISKLKRPRKVMLLVKAG 85 (497)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTS---SEECCSSHHHHHHTSCSSCEEEECCCSS
T ss_pred CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCC---CeEEeCCHHHHHhcCCCCCEEEEEcCCh
Confidence 4568999999999999999999999999999999999998876 21101 3677889999998877899999999998
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHH
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQ 163 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~ 163 (503)
.+++++++++.+.+++|++|||+||+.+.++.++.+.+.++|++|+++||+|++++++.|+++|+||+++++++++++|+
T Consensus 86 ~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~~im~gg~~e~~~~v~~ll~ 165 (497)
T 2p4q_A 86 APVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQ 165 (497)
T ss_dssp HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCCeEEecCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999989888999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHhccCCcchhHHhhhhh
Q 010702 164 KVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH-VGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (503)
Q Consensus 164 ~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~-~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (503)
.++.+.++++|+.++|+.|+|+++||++|+++++++++++|++.++++ .| ++++++.+++..|+.|.+.||+++++.+
T Consensus 166 ~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lG-l~~~~~~~~~~~w~~g~~~S~l~~~~~~ 244 (497)
T 2p4q_A 166 SISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGG-FTDKEISDVFAKWNNGVLDSFLVEITRD 244 (497)
T ss_dssp HHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTTTTCBHHHHHHHH
T ss_pred HhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 999654445679999999999999999999999999999999999999 58 9999999999999999999999999998
Q ss_pred hccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCC-ccccccc
Q 010702 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGL-KDEVQNV 321 (503)
Q Consensus 243 ~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~-~~~~~~~ 321 (503)
++.++ +|++++.++.+.|.++|||||+|+++.|.++|+|+|++.++|++|++|..+++|..+++.+.+|.. .
T Consensus 245 ~l~~~-d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~av~ar~~s~~k~~r~~~~~~~~gp~~~~------ 317 (497)
T 2p4q_A 245 ILKFD-DVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKNERIRASKVLPGPEVPK------ 317 (497)
T ss_dssp HHTCB-CTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCT------
T ss_pred HHhcC-CCCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHHHHHHHhhcchhhHHHHhhhcCCCCccc------
Confidence 87764 466679999999999999999999999999999999999999999999999999999999988752 1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCc
Q 010702 322 GVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLV 401 (503)
Q Consensus 322 ~~~~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll 401 (503)
.+..+++||+|||||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++|||
T Consensus 318 ~~~~~~~~~~~~v~~al~~~~i~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~ 397 (497)
T 2p4q_A 318 DAVKDREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLL 397 (497)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSSSTTCBHHHHHHHHHHHHCTTCSCGG
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhhh
Confidence 23357899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCcccccc--------CCCC
Q 010702 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERI--------DRPG 473 (503)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~--------d~~~ 473 (503)
+|+.|.+.+++...+|||||..|++.|||+|++|+||+||++||++++|+|||||||||||+|||+|+ |++|
T Consensus 398 ~~~~f~~~~~~~~~~~r~~v~~a~~~gvp~P~~s~aL~~~~~~~~~~~~a~liqa~Rd~FG~H~~~r~~~~~~~~~~~~~ 477 (497)
T 2p4q_A 398 FNKFFADAVTKAQSGWRKSIALATTYGIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDK 477 (497)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHSCCCBCCCGGGCCSSSCTTS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhHHHHHHHHhcCCcceeeccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cccccccCCCC
Q 010702 474 SFHTEWTKLPA 484 (503)
Q Consensus 474 ~~h~~w~~~~~ 484 (503)
.||++|++.+.
T Consensus 478 ~~h~~w~~~~~ 488 (497)
T 2p4q_A 478 DIHINWTGHGG 488 (497)
T ss_dssp CBCCCCC----
T ss_pred eeecccCCCCC
Confidence 99999976433
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-102 Score=827.27 Aligned_cols=464 Identities=50% Similarity=0.858 Sum_probs=434.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++|||||+|.||.+||.+|+++|++|++|||++++++++.+..... ++..+.+++++++.++++|+||+|||++.+
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~---gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~ 91 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGK---KLVPYYTVKEFVESLETPRRILLMVKAGAG 91 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTS---CEEECSSHHHHHHTBCSSCEEEECSCSSSH
T ss_pred CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCC---CeEEeCCHHHHHhCCCCCCEEEEECCCHHH
Confidence 35899999999999999999999999999999999999887652111 367788999999877779999999999878
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~i 165 (503)
++++++++.+.+++|++|||++|+.+.++.++.+.+.++|++|+++|++||+.+++.|+++|+||+++++++++++|+.+
T Consensus 92 v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~~ 171 (480)
T 2zyd_A 92 TDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKI 171 (480)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCCeEEecCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888988899999999999999999999999999999999999999999
Q ss_pred hccc-CCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHhccCCcchhHHhhhhhh
Q 010702 166 AAQV-DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH-VGGLSNAELAEIFDEWNKGELESFLVEITADI 243 (503)
Q Consensus 166 g~~~-~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~-~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~ 243 (503)
+.+. ++++|+.++|+.|+|+++||++|+++++++++++|++.++++ .| ++++++.+++..|+.|.+.|++++++.++
T Consensus 172 g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lG-l~~~~~~~l~~~w~~g~~~s~l~~~~~~~ 250 (480)
T 2zyd_A 172 AAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLN-LTNEELAQTFTEWNNGELSSYLIDITKDI 250 (480)
T ss_dssp SCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTTCBHHHHHHHHH
T ss_pred hccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 9764 566789999999999999999999999999999999999999 68 99999999999999999999999999998
Q ss_pred ccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCccccccccc
Q 010702 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGV 323 (503)
Q Consensus 244 l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~ 323 (503)
++.+ ++++++.++.++|.++|||||+|+++.|.++|+|+|++.+++++|++|..+++|..+++.+++|.. .+
T Consensus 251 l~~~-d~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~av~ar~~s~~k~~R~~~~~~~~g~~~-------~~ 322 (480)
T 2zyd_A 251 FTKK-DEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLSGPQA-------QP 322 (480)
T ss_dssp HHCB-CTTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHHHHHHHHHTCHHHHHHHHTTCCCCCC-------CC
T ss_pred HhcC-CCCCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHHHHHHhhhcchhhhHHhhcccCCCCC-------CC
Confidence 8764 466679999999888999999999999999999999999999999999999999999999988752 23
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcch
Q 010702 324 HVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVD 403 (503)
Q Consensus 324 ~~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~ 403 (503)
..+++||+|||||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++|||+|
T Consensus 323 ~~~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~~~ 402 (480)
T 2zyd_A 323 AGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDACAENPQIANLLLA 402 (480)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSSTTCBTHHHHHHHHHHHCTTCSCGGGS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCChHhhhcC
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCCcccccccC
Q 010702 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481 (503)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~~~h~~w~~ 481 (503)
+.|.+.+++...+|||||..|++.|||+|++|+||+||++||++++|+|||||||||||+|||+|+|++|.||++|++
T Consensus 403 ~~f~~~~~~~~~~~r~~v~~a~~~gvp~p~~s~al~~~~~~~~~~~~~~l~qa~Rd~FG~H~~~r~~~~~~~h~~w~~ 480 (480)
T 2zyd_A 403 PYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD 480 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHHCCCBCBSSSCSCBCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhhHHHHHHHhcCCCcceecCCCCcccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999963
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-101 Score=817.10 Aligned_cols=464 Identities=50% Similarity=0.866 Sum_probs=432.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||.+||.+|+++|++|.+|||++++++++.+..... ++..+.+++++++.++++|+||+|||++.++
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~---gi~~~~s~~e~v~~l~~aDvVilavp~~~~v 82 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDK---NLVFTKTLEEFVGSLEKPRRIMLMVQAGAAT 82 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTS---CEEECSSHHHHHHTBCSSCEEEECCCTTHHH
T ss_pred CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCC---CeEEeCCHHHHHhhccCCCEEEEEccCchHH
Confidence 6899999999999999999999999999999999999887652111 3677889999988777799999999998889
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHHh
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~ig 166 (503)
+++++++.+.+++|++|||++|+.+.++.++.+.+.++|++|+++|++|++..++.|+++|+||++++++.++++|+.++
T Consensus 83 ~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~~g 162 (474)
T 2iz1_A 83 DATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIA 162 (474)
T ss_dssp HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCCCEEEEECHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCCeEEecCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999888888888888999999999999999999998899999999999999999999
Q ss_pred ccc--CCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHhccCCcchhHHhhhhhh
Q 010702 167 AQV--DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKH-VGGLSNAELAEIFDEWNKGELESFLVEITADI 243 (503)
Q Consensus 167 ~~~--~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~-~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~ 243 (503)
.++ ++++|+.++|+.|+|+++||++|+++++.+++++|++.++++ .| ++++++.+++..|+.|.+.||+++++.++
T Consensus 163 ~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~G-l~~~~~~~l~~~w~~g~~~s~l~~~~~~~ 241 (474)
T 2iz1_A 163 AKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILG-LSNAEIQAIFEEWNEGELDSYLIEITKEV 241 (474)
T ss_dssp CBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHTTTTTCBHHHHHHHHH
T ss_pred cccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCccccHHHhhhhH
Confidence 764 566788999999999999999999999999999999999999 68 99999999999999999999999999998
Q ss_pred ccccccCCCc-hhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccc
Q 010702 244 FKVKDEYGEG-ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVG 322 (503)
Q Consensus 244 l~~~~~~~~~-~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~ 322 (503)
+..+| +.++ +.++.++|.++|||||+|+++.|.++|+|+|++.+++++|++|..|++|..+++.+++|.. .
T Consensus 242 l~~~d-~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~av~ar~~s~~k~~r~~~~~~~~g~~~-------~ 313 (474)
T 2iz1_A 242 LKRKD-DEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPAL-------D 313 (474)
T ss_dssp TTCBC-SSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCC-------C
T ss_pred hhcCC-CCCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHHHHHHHhhhhhhhhHHhhhccCCCCC-------c
Confidence 76544 5555 9999999999999999999999999999999999999999999999999999999988752 2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcc
Q 010702 323 VHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVV 402 (503)
Q Consensus 323 ~~~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~ 402 (503)
+..+++||+|||||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++|||+
T Consensus 314 ~~~~~~~~~~~v~~al~~~~~~~yaqGf~ll~~a~~~~~~~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l~~l~~ 393 (474)
T 2iz1_A 314 FSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLL 393 (474)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSCTTCBTTHHHHHHHHHHCTTCCCGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHhcCCChhhhhc
Confidence 33588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCCcccccccCC
Q 010702 403 DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 482 (503)
Q Consensus 403 ~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~~~h~~w~~~ 482 (503)
|+.|.+.+++..++|||||.+|++.|||+|++|+||+||++||++++|+|||||||||||+|||+|+|++|.||++|+++
T Consensus 394 ~~~~~~~~~~~~~~~r~~v~~a~~~~~p~p~~s~al~~~~~~~~~~~~~~l~qa~rd~fg~h~~~r~~~~~~~h~~w~~~ 473 (474)
T 2iz1_A 394 DDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWYTE 473 (474)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHHCCCBCBSSSSSCBCCCCC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhhHHHHHHHhcCCccceecCCCCeeeccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999863
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-99 Score=807.96 Aligned_cols=467 Identities=51% Similarity=0.862 Sum_probs=433.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-hhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-RAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+|||||+|.||.+||.+|+++||+|++|||++++++++.+ ..... ++..+.+++++++.++.+|+||+|||++.+
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~---gi~~~~~~~e~v~~l~~aDvVilaVp~~~~ 79 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGT---KVLGAHSLEEMVSKLKKPRRIILLVKAGQA 79 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTS---SCEECSSHHHHHHHBCSSCEEEECSCTTHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCC---CeEEeCCHHHHHhhccCCCEEEEeCCChHH
Confidence 58999999999999999999999999999999999998876 21001 367788999998755569999999999878
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~i 165 (503)
++++++++.+.+.+|++|||++|+.+.++.++.+.+.+.|++|+++|++|++.++..|+++|+||++++++.++++|+.+
T Consensus 80 v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~~i~~gg~~e~~~~v~~ll~~~ 159 (482)
T 2pgd_A 80 VDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGI 159 (482)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCCeEEeCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988888888888899999999999999999999889999999999999999999
Q ss_pred hccc-CCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHhccCCcchhHHhhhhhh
Q 010702 166 AAQV-DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV-GGLSNAELAEIFDEWNKGELESFLVEITADI 243 (503)
Q Consensus 166 g~~~-~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~-g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~ 243 (503)
+.++ ++++|+.++|+.|.|+++||++|+++++++++++|++.++++. | ++++++.+++..|+.+.+.|++++++.++
T Consensus 160 g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G-~~~~~~~~~~~~w~~g~~~S~l~~~~~~~ 238 (482)
T 2pgd_A 160 AAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLG-LGHKEMAKAFEEWNKTELDSFLIEITASI 238 (482)
T ss_dssp SCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHTTTTTCBHHHHHHHHH
T ss_pred hhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cCHHHHHHHHHHhcCCCcCchHHHHHhHH
Confidence 9876 5567788999999999999999999999999999999999999 8 99999999999999999999999999887
Q ss_pred ccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCccccccccc
Q 010702 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGV 323 (503)
Q Consensus 244 l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~ 323 (503)
+..+ ++++++.++.+.+.++||+||+|+++.|.++|+|+|++.++|++|+.|.+|++|..+++.+++|... .+
T Consensus 239 l~~~-d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s~~k~~r~~~~~~~~g~~~~------~~ 311 (482)
T 2pgd_A 239 LKFQ-DADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNI------PF 311 (482)
T ss_dssp HHCB-CTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC------CC
T ss_pred hhcc-CCCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhhhHHHHHhhhcCCCCcc------cc
Confidence 7664 4677799999999999999999999999999999999998999999999999999999999887521 23
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcch
Q 010702 324 HVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVD 403 (503)
Q Consensus 324 ~~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~ 403 (503)
..+.+||+|||||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++|||+|
T Consensus 312 ~~~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l~~l~~~ 391 (482)
T 2pgd_A 312 EGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLD 391 (482)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGS
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCChhhhhcC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCC-cccccccCC
Q 010702 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPG-SFHTEWTKL 482 (503)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~-~~h~~w~~~ 482 (503)
+.|.+.+++.+++|||||..|++.|||+|++|+||+|||+|+++++|+|||||||||||+|||+|+|++| .||++|++.
T Consensus 392 ~~~~~~~~~~~~~~r~~v~~a~~~g~p~p~~s~al~~~~~~~~~~~~~~l~qa~rd~fG~h~~~r~~~~~~~~h~~w~~~ 471 (482)
T 2pgd_A 392 DFFKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGH 471 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCSSCTHHHHHHHHHHHHCCCBCCSSSTTCCBCCCCSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCcchhHHHHHHhhcCCceeeecCCCCCceecccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999764
Q ss_pred CC
Q 010702 483 PA 484 (503)
Q Consensus 483 ~~ 484 (503)
+.
T Consensus 472 ~~ 473 (482)
T 2pgd_A 472 GG 473 (482)
T ss_dssp CC
T ss_pred CC
Confidence 33
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-97 Score=789.16 Aligned_cols=462 Identities=36% Similarity=0.651 Sum_probs=427.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc----ccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH----REGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~----~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|+|||||+|.||.+||.+|+++|++|++|||++++++++.+... .. ++..+.+++++++.++++|+||+|||+
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~---~i~~~~~~~e~v~~l~~aDvVilaVp~ 78 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAG---NLKAFETMEAFAASLKKPRKALILVQA 78 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGG---GEEECSCHHHHHHHBCSSCEEEECCCC
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCC---CeEEECCHHHHHhcccCCCEEEEecCC
Confidence 58999999999999999999999999999999999998876521 11 267788999999877679999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHH
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDIL 162 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll 162 (503)
+.+++++++++.+.+.+|++|||++|+.+.++.++.+.+.+.|++|+++|++|++.+++.|+++|+||++++++.++++|
T Consensus 79 ~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll 158 (478)
T 1pgj_A 79 GAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIV 158 (478)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEECHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCCeEeccCCHHHHHHHHHHH
Confidence 87899999999999999999999999999988888888888899999999999999999999888999999999999999
Q ss_pred HHHhccc-CCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhc-cCCcchhHHhhh
Q 010702 163 QKVAAQV-DDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWN-KGELESFLVEIT 240 (503)
Q Consensus 163 ~~ig~~~-~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~-~g~~~s~l~~~~ 240 (503)
+.++.+. ++++|+.++|+.|+|+++|+++|++.++.+++++|++.++++.| ++++++.+++..|+ .|.+.|++.+++
T Consensus 159 ~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G-~~~~~~~~l~~~w~~~g~~~s~l~~~~ 237 (478)
T 1pgj_A 159 EAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDIS 237 (478)
T ss_dssp HHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSTTCBHHHHHH
T ss_pred HHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhccCCCcCchHHHhh
Confidence 9999763 45677999999999999999999999999999999999999888 99999999999999 899999999999
Q ss_pred hhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCC-ccccc
Q 010702 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGL-KDEVQ 319 (503)
Q Consensus 241 ~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~-~~~~~ 319 (503)
.+++..+| +.+.+.+|.+.|.++|||||+|+++.|.++|+|+|++.++|++|++|..+++|..+++.+++|.. .
T Consensus 238 ~~~l~~~d-~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~av~~r~ls~~~~~r~~~~~~l~~~~~~~---- 312 (478)
T 1pgj_A 238 IAAARAKD-KDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGITQSP---- 312 (478)
T ss_dssp HHHHHCBC-TTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHSTTTTCCC----
T ss_pred chhhhcCC-CCChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCHHHHHHHhcCCCCccc----
Confidence 98886544 53338999999999999999999999999999999999999999999999999999999987742 1
Q ss_pred ccccc-cch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCC
Q 010702 320 NVGVH-VDK---KRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNP 395 (503)
Q Consensus 320 ~~~~~-~~~---~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~ 395 (503)
.+. .+. ..|+++|++|+|+++|++|+|||+||++++++|+|++|+.+|++|||+||||||.||+.|.++|+++|
T Consensus 313 --~~~~~~~~~~~~~~~~~~~al~~~~~~~yaqg~~~~~~a~~~~~w~l~~~~~a~~wr~gciir~~~l~~i~~a~~~~~ 390 (478)
T 1pgj_A 313 --GYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNP 390 (478)
T ss_dssp --CCCCSCCSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHHHHHHHCT
T ss_pred --ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCCceeeHHHHHHHHHHHhcCC
Confidence 122 355 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhHhHHHHhhhhHHHHHHHH-HHHcCCChHHHHHHHHHHHhhccCCcc-hhHHHhhhhhcCCccccccCCCC
Q 010702 396 NLASLVVDPEFAREMVQRQAAWRRVVGL-AISAGISTPGMCASLSYFDTYRRARLP-ANLVQAQRDLFGAHTYERIDRPG 473 (503)
Q Consensus 396 ~~~~ll~~~~~~~~~~~~~~~~r~~v~~-a~~~gvp~P~~saal~y~~~~~~~~~~-~~~iqa~rd~fG~H~~~r~d~~~ 473 (503)
++.||| +.|.+.+++.+.+||++|.. |++.|||+|++|+||+|||+||+++|| +|||||||||||+|||+|+|++|
T Consensus 391 ~~~~l~--~~~~~~~~~~~~~~r~~v~~~~~~~g~~~p~~~~~l~y~d~~~~~~l~~~~l~qaqrd~fg~h~~~~~~~~~ 468 (478)
T 1pgj_A 391 NISNLM--CAFQTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDG 468 (478)
T ss_dssp TCSCTT--GGGHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHHCCCEEBSSSSS
T ss_pred ChhhHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhccccCCcchhHHHHHHhccCceeeecCCCC
Confidence 999999 89999999999999999999 999999999999999999999999999 99999999999999999999999
Q ss_pred cccccccC
Q 010702 474 SFHTEWTK 481 (503)
Q Consensus 474 ~~h~~w~~ 481 (503)
.||++|++
T Consensus 469 ~~h~~w~~ 476 (478)
T 1pgj_A 469 RESFQWPE 476 (478)
T ss_dssp EECCCCCC
T ss_pred ceecCCCC
Confidence 99999975
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-52 Score=426.92 Aligned_cols=319 Identities=27% Similarity=0.489 Sum_probs=263.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|+|||||+|.||.+||.+|+++||+|++|||++++++.+.+.+ +..+.+++++++..+.+|+||+|||++ .+
T Consensus 23 mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v 94 (358)
T 4e21_A 23 MQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREG-------IAGARSIEEFCAKLVKPRVVWLMVPAA-VV 94 (358)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTT-------CBCCSSHHHHHHHSCSSCEEEECSCGG-GH
T ss_pred CEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCC-------CEEeCCHHHHHhcCCCCCEEEEeCCHH-HH
Confidence 6899999999999999999999999999999999999888654 466789999998844459999999998 89
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHHh
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~ig 166 (503)
+++++++.+.+.+|++|||+||+.|.+++++.+.+.++|++|+++||+||+.+++.|+++|+||+++++++++++|+.++
T Consensus 95 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~~im~GG~~~a~~~~~~ll~~lg 174 (358)
T 4e21_A 95 DSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGYCLMIGGEKQAVERLDPVFRTLA 174 (358)
T ss_dssp HHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCCEEEEESCHHHHHHTHHHHHHHS
T ss_pred HHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCCeeeecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC--------------CcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCc
Q 010702 167 AQVDDG--------------PCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGEL 232 (503)
Q Consensus 167 ~~~~~~--------------~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~ 232 (503)
++.++. ++++|+|+.|+|+++|+++|.+.++.+++++|++.++++.| +...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~-~~~~-------------- 239 (358)
T 4e21_A 175 PGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHAN-AGKE-------------- 239 (358)
T ss_dssp CCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CC----------------
T ss_pred cccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccc--------------
Confidence 543211 47999999999999999999999999999999999999876 2211
Q ss_pred chhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccC
Q 010702 233 ESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEA 312 (503)
Q Consensus 233 ~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~ 312 (503)
.. . + ++ . .. |
T Consensus 240 -----------~~--~-------~-----~~-------------~-~~---~---------------------------- 249 (358)
T 4e21_A 240 -----------GQ--G-------A-----DA-------------E-TA---P---------------------------- 249 (358)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------cc--c-------c-----cc-------------c-cc---c----------------------------
Confidence 00 0 0 00 0 00 0
Q ss_pred CCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHh
Q 010702 313 GLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQ 392 (503)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~ 392 (503)
. +.+++|+|++|+.+|+++||+||+|+|+||+.+.++|+
T Consensus 250 -~----------------------------------------~~~~~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~~~~ 288 (358)
T 4e21_A 250 -L----------------------------------------RNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATALL 288 (358)
T ss_dssp -------------------------------------------CGGGCCCCCCHHHHHHHHTTTSTTCBHHHHHHHHHHH
T ss_pred -c----------------------------------------ccchhcccCCCHHHHHHHHhCccHHHHHHHHHHHHHHh
Confidence 0 01467999999999999999999999999999999999
Q ss_pred cCCCCCCCcchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH-HHHhhccCCcch-hHHHhhhhhcCCcccc
Q 010702 393 RNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS-YFDTYRRARLPA-NLVQAQRDLFGAHTYE 467 (503)
Q Consensus 393 ~~~~~~~ll~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~-y~~~~~~~~~~~-~~iqa~rd~fG~H~~~ 467 (503)
++|.+.++. +.+. +++++ ||++..|.+.|+|+|++++||+ +|++ +.+++++ |++||||||||+|+++
T Consensus 289 ~~p~~~~~~--~~~~---d~g~~--r~~~~~A~~~gvp~p~~~~al~~~~~s-~~~~~~~~~l~~a~r~~fG~h~~~ 357 (358)
T 4e21_A 289 DSPDLQEFQ--GRVS---DSGEG--RWTVAAAIDEGVPAHVLSSALYERFSS-RGEDDFANRLLSAMRYEFGGHREK 357 (358)
T ss_dssp HCTTCTTC----CCC---CCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHH-TTTTHHHHHHHHHHC---------
T ss_pred hCCChHHHH--HHHH---hcCcH--HHHHHHHHHcCCChHHHHHHHHHHHHH-CCCcccHHHHHHHHHHhcCCCCCC
Confidence 987765432 2222 24454 9999999999999999999998 5666 7788884 7999999999999975
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-47 Score=381.75 Aligned_cols=265 Identities=23% Similarity=0.324 Sum_probs=241.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+||||||+|.||.+||+||+++||+|++|||++++++.+.+.+ .+.+.|+.|+++. +|+||+|||++.+
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~G-------a~~a~s~~e~~~~---~dvv~~~l~~~~~ 72 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAG-------ASAARSARDAVQG---ADVVISMLPASQH 72 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT-------CEECSSHHHHHTT---CSEEEECCSCHHH
T ss_pred cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcC-------CEEcCCHHHHHhc---CCceeecCCchHH
Confidence 46899999999999999999999999999999999999998865 5788999999998 9999999999999
Q ss_pred HHHHHH---HHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHH
Q 010702 86 VDQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (503)
Q Consensus 86 v~~vl~---~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~l 161 (503)
+++|+. ++++.+.+|++|||+||+.|..++++.+.++++|++|+|+|||||+.+|+.|+ ++|+||+++++++++|+
T Consensus 73 v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~ 152 (300)
T 3obb_A 73 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPL 152 (300)
T ss_dssp HHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHHH
Confidence 999985 47788999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhh
Q 010702 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (503)
Q Consensus 162 l~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~ 241 (503)
|+.++ ++++|+|+.|+|+.+|++||.+.++.+++++|++.++++.| +|++.+.+++ +.+...||.++.+.
T Consensus 153 l~~~g------~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~G-ld~~~~~~vl---~~~~~~s~~~~~~~ 222 (300)
T 3obb_A 153 FEAMG------RNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANG-LEAKVLAEIM---RRSSGGNWALEVYN 222 (300)
T ss_dssp HHHHE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HTSTTCCHHHHHCC
T ss_pred HHHhC------CCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHH---HhCcccchHHHhhc
Confidence 99999 78999999999999999999999999999999999999999 9999999997 56778899988776
Q ss_pred hhc------cccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010702 242 DIF------KVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (503)
Q Consensus 242 ~~l------~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~ 297 (503)
+.. ...++|+++|.++.+.||++ ++.++|.+.|+|+|+...+ .++|.++
T Consensus 223 p~~~~~~~~~~~~~~~~~f~~~l~~KDl~------l~~~~A~~~g~~~p~~~~a-~~~~~~a 277 (300)
T 3obb_A 223 PWPGVMENAPASRDYSGGFMAQLMAKDLG------LAQEAAQASASSTPMGSLA-LSLYRLL 277 (300)
T ss_dssp CSTTTSTTSGGGGTTCSSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHHHHH
T ss_pred cccchhhhccccccCCccchHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 532 11246889999999999996 9999999999999998865 4555443
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=370.34 Aligned_cols=267 Identities=18% Similarity=0.251 Sum_probs=235.5
Q ss_pred cCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 3 ASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 3 ~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
..|..||||||+|.||.+||++|+++||+|++|||++++++++.+.+ .+.+.|+.|+++. +|+||+|+|+
T Consensus 2 ~~Ms~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------~~~~~s~~e~~~~---~dvvi~~l~~ 71 (297)
T 4gbj_A 2 NAMSEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLG-------ATVVENAIDAITP---GGIVFSVLAD 71 (297)
T ss_dssp --CCCEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTT-------CEECSSGGGGCCT---TCEEEECCSS
T ss_pred CCCCCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcC-------CeEeCCHHHHHhc---CCceeeeccc
Confidence 34556899999999999999999999999999999999998887654 5778999999887 9999999999
Q ss_pred ChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHH
Q 010702 83 GSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (503)
Q Consensus 83 ~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ 160 (503)
+.++++++ ..+.+.+.++++|||+||+.|.+++++.+.+.++|++|+|+||+||+.+++.|+ ++|+||+++++++++|
T Consensus 72 ~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~ 151 (297)
T 4gbj_A 72 DAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKP 151 (297)
T ss_dssp HHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeecccchhHHHHHHH
Confidence 88888877 668888999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHhcccCCCCcEEEeCC-cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhh
Q 010702 161 ILQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239 (503)
Q Consensus 161 ll~~ig~~~~~~~~v~~~G~-~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~ 239 (503)
+|+.++ +.++|+|+ .|+|+++|+++|.+.++.+++++|++.++++.| +|++++.+++ +.+.+.||+++.
T Consensus 152 ~l~~~g------~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~G-ld~~~~~~~l---~~~~~~s~~~~~ 221 (297)
T 4gbj_A 152 IVENFV------KGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNG-ISRQSIYEML---TSTLFAAPIFQN 221 (297)
T ss_dssp HHHTTC------SEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HTTTTCSHHHHH
T ss_pred HHHHhh------CCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhcccCchhhc
Confidence 999999 78999985 799999999999999999999999999999999 9999999987 678889999999
Q ss_pred hhhhccccccCCC-chhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010702 240 TADIFKVKDEYGE-GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (503)
Q Consensus 240 ~~~~l~~~~~~~~-~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~ 297 (503)
+.+.+.. ++|.| +|.++.+.||++ +++++|+++|+|+|+...+ .++|..+
T Consensus 222 ~~~~~~~-~~~~p~~f~~~l~~KDl~------l~~~~A~~~g~~~p~~~~~-~~~~~~a 272 (297)
T 4gbj_A 222 YGKLVAS-NTYEPVAFRFPLGLKDIN------LTLQTASDVNAPMPFADII-RNRFISG 272 (297)
T ss_dssp HHHHHHH-TCCCSCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHHH
T ss_pred cCccccC-CCCCCccchhHHHHHHHH------HHHHHHHHhCCCChHHHHH-HHHHHHH
Confidence 9887765 45765 799999999996 9999999999999998765 5666544
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-38 Score=316.76 Aligned_cols=264 Identities=20% Similarity=0.304 Sum_probs=240.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.||+|||||+|.||..||.+|+++||+|++|||++++++.+.+.+ +..+.+++++++. +|+||+|||++.
T Consensus 20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~~~~~~~~~---aDvvi~~vp~~~ 89 (310)
T 3doj_A 20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHG-------ASVCESPAEVIKK---CKYTIAMLSDPC 89 (310)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHH
T ss_pred cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-------CeEcCCHHHHHHh---CCEEEEEcCCHH
Confidence 467999999999999999999999999999999999999887653 5678899999988 999999999987
Q ss_pred hHHHHH---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHH
Q 010702 85 PVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (503)
Q Consensus 85 ~v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ 160 (503)
++++++ +++.+.+.+|++|||+||+.+..++++.+.+.++|++|+++|++|++..+..|+ .+++||++++++++++
T Consensus 90 ~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ 169 (310)
T 3doj_A 90 AALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIP 169 (310)
T ss_dssp HHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHH
T ss_pred HHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHHHH
Confidence 899998 788889999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhh
Q 010702 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240 (503)
Q Consensus 161 ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~ 240 (503)
+|+.++ ++++++|+.|.|+.+|+++|.+.++.+++++|++.++++.| ++++++.+++. .+...|++++..
T Consensus 170 ll~~~g------~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~d~~~~~~~~~---~~~~~s~~~~~~ 239 (310)
T 3doj_A 170 AFDVLG------KRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSG-LSSDTLLDILD---LGAMTNPMFKGK 239 (310)
T ss_dssp HHHHHE------EEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHHH---HSTTCCHHHHHH
T ss_pred HHHHhC------CCEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hcccccHHHHHH
Confidence 999999 78999999999999999999999999999999999999999 99999999984 567788988887
Q ss_pred hhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010702 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (503)
Q Consensus 241 ~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s 296 (503)
.+.+.. ++|.++|.++.+.||+. .+++.|+++|+|+|++..+ .+.|..
T Consensus 240 ~~~~~~-~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 287 (310)
T 3doj_A 240 GPSMNK-SSYPPAFPLKHQQKDMR------LALALGDENAVSMPVAAAA-NEAFKK 287 (310)
T ss_dssp HHHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHH
T ss_pred hhhhhc-CCCCCCccHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 766654 56889999999999985 8999999999999999865 444433
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=316.39 Aligned_cols=262 Identities=21% Similarity=0.293 Sum_probs=238.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+|+|||||+|.||..+|.+|+++|++|++|||++++.+++.+.+ +..+.++++++++ +|+||+|||++..
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~~~~e~~~~---aDvVi~~vp~~~~ 100 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALG-------ATIHEQARAAARD---ADIVVSMLENGAV 100 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTT-------CEEESSHHHHHTT---CSEEEECCSSHHH
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCC-------CEeeCCHHHHHhc---CCEEEEECCCHHH
Confidence 46999999999999999999999999999999999999887753 5678899999887 9999999998878
Q ss_pred HHHHHH--HHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010702 86 VDQTIA--ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (503)
Q Consensus 86 v~~vl~--~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll 162 (503)
++.++. ++.+.+.++++|||+||+.+..++++.+.+.++|++|+++|++|++.++..|+ .+++||+++++++++++|
T Consensus 101 ~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll 180 (320)
T 4dll_A 101 VQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLL 180 (320)
T ss_dssp HHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHH
Confidence 999987 88888999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhh
Q 010702 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (503)
Q Consensus 163 ~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (503)
+.+ . .++++|+.|.|+++|+++|.+.++.+++++|++.++++.| ++++++.+++ +.+.+.||+++...+
T Consensus 181 ~~~-~------~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~d~~~~~~~~---~~~~~~s~~~~~~~~ 249 (320)
T 4dll_A 181 KVF-G------RATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGG-ADMAKVKEAI---TGGFADSRVLQLHGQ 249 (320)
T ss_dssp HHH-E------EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCHHHHHHHH---TTSTTCBHHHHTHHH
T ss_pred Hhc-C------CEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcccccCHHHHHhhh
Confidence 999 4 5889999999999999999999999999999999999999 9999999987 567788999998887
Q ss_pred hccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010702 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (503)
Q Consensus 243 ~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s 296 (503)
.+.. ++|.++|.++.+.||+. ++++.|.++|+|+|++..+ .+.|..
T Consensus 250 ~~l~-~~~~~gf~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 295 (320)
T 4dll_A 250 RMVE-RDFAPRARLSIQLKDMR------NALATAQEIGFDAPITGLF-EQLYAE 295 (320)
T ss_dssp HHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHH
T ss_pred hhcc-CCCCCcccHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 6655 46889999999999996 8999999999999999865 444443
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=310.10 Aligned_cols=261 Identities=18% Similarity=0.280 Sum_probs=239.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|||||||+|.||..+|.+|+++||+|++|||++++.+.+.+.+ +..+.++++++++ +|+||+|||++..+
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---aDvvi~~vp~~~~~ 71 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALG-------AERAATPCEVVES---CPVTFAMLADPAAA 71 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEEcCCHHHH
Confidence 6899999999999999999999999999999999999888753 5678899999988 99999999987789
Q ss_pred HHHH---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010702 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (503)
Q Consensus 87 ~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll 162 (503)
++++ +++.+.+.+|++|||+||+.+..++++.+.+.++|++|+++|++|++..+..|+ .+++||+++++++++++|
T Consensus 72 ~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 151 (287)
T 3pef_A 72 EEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGF 151 (287)
T ss_dssp HHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHH
Confidence 9999 889999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhh
Q 010702 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (503)
Q Consensus 163 ~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (503)
+.++ .+++++|+.|.|+.+|+++|.+.++.+++++|++.++++.| ++++++.+++. .+.+.|++++...+
T Consensus 152 ~~~g------~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G-~d~~~~~~~~~---~~~~~s~~~~~~~~ 221 (287)
T 3pef_A 152 EKMG------KKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAG-LATDAILDVIG---AGAMANPMFALKGG 221 (287)
T ss_dssp HHHE------EEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---HSTTCCHHHHHHHH
T ss_pred HHhC------CCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hcccccHHHHHHhh
Confidence 9999 78999999999999999999999999999999999999999 99999999984 56678999888877
Q ss_pred hccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHH
Q 010702 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYL 295 (503)
Q Consensus 243 ~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~ 295 (503)
.+.. ++|.++|.++.+.||+. ++++.|+++|+|+|++..+ .+.|.
T Consensus 222 ~~~~-~~~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~~~~~-~~~~~ 266 (287)
T 3pef_A 222 LIRD-RNFAPAFPLKHMQKDLR------LAVALGDRVGQPLVASAAA-NELFK 266 (287)
T ss_dssp HHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHHH
T ss_pred hhhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHH
Confidence 6665 45888999999999985 9999999999999999865 44443
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-38 Score=311.26 Aligned_cols=262 Identities=18% Similarity=0.267 Sum_probs=238.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|++|||||+|.||..+|.+|+++||+|++|||++++.+.+.+.+ +..+.+++++++. +|+||+|||++.+
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---advvi~~v~~~~~ 70 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALG-------ARQASSPAEVCAA---CDITIAMLADPAA 70 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHT-------CEECSCHHHHHHH---CSEEEECCSSHHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHHc---CCEEEEEcCCHHH
Confidence 46899999999999999999999999999999999999888764 5678899999988 9999999999778
Q ss_pred HHHHH---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHH
Q 010702 86 VDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (503)
Q Consensus 86 v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~l 161 (503)
+++++ +++.+.+.+|++|||+||+.+..++++.+.+.++|++|+++|++|++..+..|+ .+++||+++++++++++
T Consensus 71 ~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 150 (287)
T 3pdu_A 71 AREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPA 150 (287)
T ss_dssp HHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHH
T ss_pred HHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHH
Confidence 99998 788888999999999999999999999999988999999999999999999999 99999999999999999
Q ss_pred HHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhh
Q 010702 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (503)
Q Consensus 162 l~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~ 241 (503)
|+.++ ++++++|+.|.|+.+|+++|.+.+..+++++|++.++++.| ++++++.+++. .+.+.|++++...
T Consensus 151 l~~~g------~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~~---~~~~~s~~~~~~~ 220 (287)
T 3pdu_A 151 FAALG------KKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCG-LDGGQLLEVLD---AGAMANPMFKGKG 220 (287)
T ss_dssp HHHHE------EEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---HSTTCCHHHHHHH
T ss_pred HHHhC------CCEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hccccChHHHhhc
Confidence 99999 78999999999999999999999999999999999999999 99999999984 4667899988887
Q ss_pred hhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHH
Q 010702 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYL 295 (503)
Q Consensus 242 ~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~ 295 (503)
+.+.. ++|.++|.++...||+. ++++.|+++|+|+|++.++ .+.|.
T Consensus 221 ~~~~~-~~~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~~~~~-~~~~~ 266 (287)
T 3pdu_A 221 QMLLS-GEFPTSFPLKHMQKDLR------LAVELGDRLGQPLHGAATA-NESFK 266 (287)
T ss_dssp HHHHH-TCCCCSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHHH
T ss_pred ccccc-CCCCCCCcHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHH
Confidence 76655 45788999999999985 8999999999999999865 34433
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=312.14 Aligned_cols=260 Identities=18% Similarity=0.211 Sum_probs=232.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++|||||+|.||..+|.+|+++||+|++|||++++++.+.+.+ ++.+.+++++++ +|+||+|||++.+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~----aDvvi~~vp~~~~ 83 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAG-------ATLADSVADVAA----ADLIHITVLDDAQ 83 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTT-------CEECSSHHHHTT----SSEEEECCSSHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-------CEEcCCHHHHHh----CCEEEEECCChHH
Confidence 35899999999999999999999999999999999998888753 567889998875 8999999998888
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQK 164 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll~~ 164 (503)
++++++++.+.+.++++|||+||+.+..++++.+.+.++|++|+++|++|+++.+..|+ .+++||+++++++++++|+.
T Consensus 84 ~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~ 163 (296)
T 3qha_A 84 VREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKH 163 (296)
T ss_dssp HHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998999999999999999999999 99999999999999999999
Q ss_pred HhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH------HHHHHHhccCCcchhHHh
Q 010702 165 VAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAEL------AEIFDEWNKGELESFLVE 238 (503)
Q Consensus 165 ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i------~~~~~~~~~g~~~s~l~~ 238 (503)
++ +.++++|+.|.|+.+|+++|.+.++.+++++|++.++++.| ++++++ .+++ +.+.+.||+.+
T Consensus 164 ~g------~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G-~d~~~~~~~~~~~~~i---~~~~~~s~~~~ 233 (296)
T 3qha_A 164 WA------AVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAG-LDLQALGRVVRHTDAL---TGGPGAIMVRD 233 (296)
T ss_dssp HE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHH---HCCGGGGCCCS
T ss_pred Hc------CCeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHhhhcchHHHH---hcCcccCHHhh
Confidence 99 78999999999999999999999999999999999999999 999999 6665 45677777665
Q ss_pred hhhhhccccccCCCchhH-----HHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010702 239 ITADIFKVKDEYGEGELV-----DKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (503)
Q Consensus 239 ~~~~~l~~~~~~~~~~~l-----d~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~ 297 (503)
...++. + |.++|.+ +.+.||+. .+++.|.++|+|+|++..+ .+.|..+
T Consensus 234 -~~~~~~--~-~~~~f~~~~~~~~~~~KD~~------~~~~~a~~~g~~~p~~~~~-~~~~~~~ 286 (296)
T 3qha_A 234 -NMKDLE--P-DNFLYQPFLHTRGLGEKDLS------LALALGEAVSVDLPLARLA-YEGLAAG 286 (296)
T ss_dssp -SCSCCC--T-TSTTHHHHHHHHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHHH
T ss_pred -chhhhh--c-CCCCCchhhhhhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 333333 3 7788999 99999985 8899999999999999875 4555443
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=309.12 Aligned_cols=263 Identities=20% Similarity=0.290 Sum_probs=236.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhccCCCcEEEEecCCC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
++|||||||+|.||.+||.+|+++||+|++|||++++++.+.+.+ ... +.+++++++. +|+||+|||++
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~e~~~~---aDvvi~~vp~~ 75 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEG-------ACGAAASAREFAGV---VDALVILVVNA 75 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CSEEESSSTTTTTT---CSEEEECCSSH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcC-------CccccCCHHHHHhc---CCEEEEECCCH
Confidence 346899999999999999999999999999999999999888764 234 7788888877 99999999997
Q ss_pred hhHHHHH---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHH
Q 010702 84 SPVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIR 159 (503)
Q Consensus 84 ~~v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~ 159 (503)
..++.++ +++.+.+.++++|||+||+.+..++++.+.+.++|++|+++|++|++..+..|+ .+++||+++++++++
T Consensus 76 ~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~ 155 (303)
T 3g0o_A 76 AQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLK 155 (303)
T ss_dssp HHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHHH
T ss_pred HHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHHH
Confidence 7889888 788888999999999999999999999999988999999999999999999999 999999999999999
Q ss_pred HHHHHHhcccCCCCcEEEeCC-cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHh
Q 010702 160 DILQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVE 238 (503)
Q Consensus 160 ~ll~~ig~~~~~~~~v~~~G~-~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~ 238 (503)
++|+.++ ++++++|+ .|.|+.+|+++|.+.+..+++++|++.++++.| ++++++.+++ +.+...|++++
T Consensus 156 ~ll~~~g------~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~d~~~~~~~~---~~~~~~s~~~~ 225 (303)
T 3g0o_A 156 PVLDAVA------SNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAG-IPLDVMYDVV---THAAGNSWMFE 225 (303)
T ss_dssp HHHHHHE------EEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCCHHHH
T ss_pred HHHHHHC------CCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhcccCCHHHH
Confidence 9999999 78999998 899999999999999999999999999999999 9999999997 45777899988
Q ss_pred hhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHH
Q 010702 239 ITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYL 295 (503)
Q Consensus 239 ~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~ 295 (503)
...+.+.. ++|.++|.++.+.||+. ++++.|+++|+|+|++.++ .+.+.
T Consensus 226 ~~~~~~~~-~~~~~~~~~~~~~kD~~------~~~~~a~~~g~~~p~~~~~-~~~~~ 274 (303)
T 3g0o_A 226 NRMQHVVD-GDYTPRSAVDIFVKDLG------LVADTAKALRFPLPLASTA-LNMFT 274 (303)
T ss_dssp HHHHHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHH
T ss_pred hhhHHHhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHH
Confidence 87765554 55888899999999985 8999999999999999865 44443
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=295.85 Aligned_cols=260 Identities=14% Similarity=0.137 Sum_probs=226.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++|||||+|.||.+||++|+++||+|++|||++++.+++.+.+ +..+.++++++++ +|+||+|||++.+
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~---aDvVi~~vp~~~~ 78 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAG-------AHLCESVKAALSA---SPATIFVLLDNHA 78 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT-------CEECSSHHHHHHH---SSEEEECCSSHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEEeCCHHH
Confidence 57899999999999999999999999999999999999888764 4678899999988 9999999999877
Q ss_pred HHHHHH--HHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010702 86 VDQTIA--ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (503)
Q Consensus 86 v~~vl~--~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll 162 (503)
+++++. .+.+ +.+|++|||+||+.+..++++.+.+.++|++|+++|++|+++.+..+. .+|+||+++++++++++|
T Consensus 79 ~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~ll 157 (306)
T 3l6d_A 79 THEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALL 157 (306)
T ss_dssp HHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHHH
T ss_pred HHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHHH
Confidence 899886 6654 568999999999999999999999999999999999999987777666 899999999999999999
Q ss_pred HHHhcccCCCCcEEEe--CC-cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhh
Q 010702 163 QKVAAQVDDGPCVTYI--GE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239 (503)
Q Consensus 163 ~~ig~~~~~~~~v~~~--G~-~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~ 239 (503)
+.++ ..++++ |+ .|+|+.+| .+.++.+++++|++.++++.| +|++++.+++..+.. .+.|++++.
T Consensus 158 ~~lg------~~~~~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~~~~~~~-~~~s~~~~~ 225 (306)
T 3l6d_A 158 EGLA------GHTVFLPWDEALAFATVLH----AHAFAAMVTFFEAVGAGDRFG-LPVSKTARLLLETSR-FFVADALEE 225 (306)
T ss_dssp HTTC------SEEEECCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHhc------CCEEEecCCCCccHHHHHH----HHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhhh-hcccHHHHH
Confidence 9998 689999 97 79999999 566788999999999999999 999999999854310 157888888
Q ss_pred hhhhccccccCCCc-hhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010702 240 TADIFKVKDEYGEG-ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (503)
Q Consensus 240 ~~~~l~~~~~~~~~-~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s 296 (503)
+.+.+.. ++|.++ |.++.+.||+. ++++.|.+.|+|+|++.++ .+.|..
T Consensus 226 ~~~~~~~-~~~~~~~~~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 275 (306)
T 3l6d_A 226 AVRRLET-QDFKGDQARLDVHADAFA------HIAQSLHAQGVWTPVFDAV-CQVVQR 275 (306)
T ss_dssp HHHHHHH-TCCCTTSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHH
T ss_pred HHHHHhc-CCCCCCcccHHHHHHHHH------HHHHHHHHcCCCchHHHHH-HHHHHH
Confidence 7776654 457765 78999999996 9999999999999999865 455544
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=280.96 Aligned_cols=253 Identities=13% Similarity=0.104 Sum_probs=211.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC--hhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT--TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~--~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
+|+|||||+|.||.+||.+|+++|| +|++|||+ +++.+.+.+.+ +..+.+++++++. +|+||+|||+
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g-------~~~~~~~~e~~~~---aDvVi~~vp~ 93 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELG-------VSCKASVAEVAGE---CDVIFSLVTA 93 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTT-------CEECSCHHHHHHH---CSEEEECSCT
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCC-------CEEeCCHHHHHhc---CCEEEEecCc
Confidence 5799999999999999999999999 99999997 57777666543 5678899999888 9999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc--CccEecccCCCChhhhhcCC-cccCCCCHHHHHHHH
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIR 159 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~ 159 (503)
.. ..+++.++.+.+.++++|||+||+.+..++++.+.+.++ |++|+++|++|++..+ .|. ++++||+++ ++++
T Consensus 94 ~~-~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~-~g~l~i~vgg~~~--~~~~ 169 (312)
T 3qsg_A 94 QA-ALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPH-GHRVPLVVDGDGA--RRFQ 169 (312)
T ss_dssp TT-HHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTT-GGGSEEEEESTTH--HHHH
T ss_pred hh-HHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhh-cCCEEEEecCChH--HHHH
Confidence 75 455789999999999999999999999999999999888 9999999999987654 566 899999887 8999
Q ss_pred HHHHHHhcccCCCCcEEEeCC-cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHh
Q 010702 160 DILQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVE 238 (503)
Q Consensus 160 ~ll~~ig~~~~~~~~v~~~G~-~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~ 238 (503)
++|+.+| +.++++|+ .|+|+.+|+++|.+.++.+++++|++.++++.| +++ ++.+.+.. +. .++.++
T Consensus 170 ~ll~~~g------~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~-~~~~~l~~---~~-~~~~~~ 237 (312)
T 3qsg_A 170 AAFTLYG------CRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMG-LAD-RVLASLDA---SF-PEHHLR 237 (312)
T ss_dssp HHHHTTT------CEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CHH-HHHHHHHH---HS-GGGTHH
T ss_pred HHHHHhC------CCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCH-HHHHHHHh---cC-CchhHH
Confidence 9999999 78999998 899999999999999999999999999999999 998 56676643 22 244444
Q ss_pred hhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHH
Q 010702 239 ITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYL 295 (503)
Q Consensus 239 ~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~ 295 (503)
...+.+.. ++|.++|.+ .||+. .+++.|.+.|+|+|++.++ .+.|.
T Consensus 238 ~~~~~~~~-~~~~~g~~~---~KDl~------~~~~~a~~~g~~~pl~~~~-~~~~~ 283 (312)
T 3qsg_A 238 DLALYLVE-RNLEHADRR---AHELG------EVAATLCSVGVEPLVAEAG-YRRLT 283 (312)
T ss_dssp HHHHHHHH-HHHHHHHHH---HHHHH------HHHHHHHHTTCCCHHHHHH-HHHHH
T ss_pred HhhhHhhc-CCCCcccch---HHHHH------HHHHHHHHcCCCcHHHHHH-HHHHH
Confidence 44444433 346677765 57774 8999999999999998865 44443
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=272.20 Aligned_cols=259 Identities=20% Similarity=0.321 Sum_probs=225.2
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 4 ~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
.|+|+|+|||+|.||..+|.+|+++|++|.+|||++++.+.+.+.+ +....+++++++. +|+||+|+|++
T Consensus 3 ~M~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~D~vi~~v~~~ 72 (299)
T 1vpd_A 3 AMTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAG-------AETASTAKAIAEQ---CDVIITMLPNS 72 (299)
T ss_dssp ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSH
T ss_pred cccceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCC-------CeecCCHHHHHhC---CCEEEEECCCH
Confidence 3557999999999999999999999999999999999988887653 4667889888887 99999999987
Q ss_pred hhHHHHH---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHH
Q 010702 84 SPVDQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIR 159 (503)
Q Consensus 84 ~~v~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~ 159 (503)
.+++.++ +++.+.+.++++||++++..+.+.+++.+.+.+.|++|+++|+++++..+..+. .+++||+++.++.++
T Consensus 73 ~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (299)
T 1vpd_A 73 PHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYY 152 (299)
T ss_dssp HHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHH
Confidence 7888888 678888999999999999998888888888888899999999999988888888 888899999999999
Q ss_pred HHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhh
Q 010702 160 DILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI 239 (503)
Q Consensus 160 ~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~ 239 (503)
++|+.++ ..++++++.|.|.++|+++|.+.+..+++++|++.++++.| ++++++.+++ ..+...++.+..
T Consensus 153 ~ll~~~g------~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~~ 222 (299)
T 1vpd_A 153 DLMKAMA------GSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAG-VNPDLVYQAI---RGGLAGSTVLDA 222 (299)
T ss_dssp HHHHTTE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCCHHHHH
T ss_pred HHHHHHc------CCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HccCCCCHHHHH
Confidence 9999999 67899999999999999999999999999999999999999 9999998886 455566777665
Q ss_pred hhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 240 TADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 240 ~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
..+.+.+ +++.+++.++.+.|+++ ++++.|+++|+|+|++..+
T Consensus 223 ~~~~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~~ 265 (299)
T 1vpd_A 223 KAPMVMD-RNFKPGFRIDLHIKDLA------NALDTSHGVGAQLPLTAAV 265 (299)
T ss_dssp HHHHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH
T ss_pred hhhHhhc-CCCCCCCChHHHHHHHH------HHHHHHHHcCCCChHHHHH
Confidence 5444433 44677889999988875 8999999999999998864
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=277.93 Aligned_cols=253 Identities=13% Similarity=0.127 Sum_probs=204.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCCh-------hHHHHHHHhhcccCCCCeeeeC-CHHHHHhccCCCcE
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTT-------SKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRS 75 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~-------~~~~~l~~~~~~~g~~~i~~~~-s~~e~~~~l~~~dv 75 (503)
|+|+|||||+|.||.+||.+|+++| ++|++|||++ +..+.+.+.+ + +. ++++++++ +|+
T Consensus 23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g-------~--~~~s~~e~~~~---aDv 90 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELG-------V--EPLDDVAGIAC---ADV 90 (317)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTT-------C--EEESSGGGGGG---CSE
T ss_pred cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCC-------C--CCCCHHHHHhc---CCE
Confidence 5679999999999999999999999 9999999998 3444444332 3 56 78888887 999
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHH
Q 010702 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEA 154 (503)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a 154 (503)
||+|||++.. .++++++.+.+.++++|||+||+.|.+++++.+.+.++|++|+++|++|++ .+..|. ++++||+++
T Consensus 91 Vi~avp~~~~-~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~-~a~~g~l~i~vgg~~~- 167 (317)
T 4ezb_A 91 VLSLVVGAAT-KAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARV-PPYAEKVPILVAGRRA- 167 (317)
T ss_dssp EEECCCGGGH-HHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCS-TTTGGGSEEEEESTTH-
T ss_pred EEEecCCHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCc-hhhcCCEEEEEeCChH-
Confidence 9999999754 456689999999999999999999999999999999999999999999964 556666 899999887
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEeCC-cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcc
Q 010702 155 YNNIRDILQKVAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELE 233 (503)
Q Consensus 155 ~~~v~~ll~~ig~~~~~~~~v~~~G~-~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~ 233 (503)
++++++|+.++ ++++++|+ .|+|+.+|+++|.+.++.+++++|++.++++.| ++++ +.+.+..- +...
T Consensus 168 -~~~~~ll~~~g------~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~G-id~~-~~~~l~~~--~~~~ 236 (317)
T 4ezb_A 168 -VEVAERLNALG------MNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAG-VTER-ILDSVQET--FPGL 236 (317)
T ss_dssp -HHHHHHHHTTT------CEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHH-HHHHHHHH--STTS
T ss_pred -HHHHHHHHHhC------CCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHH-HHHHHHhc--Cccc
Confidence 89999999999 88999998 899999999999999999999999999999999 9995 44454321 1123
Q ss_pred hhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010702 234 SFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (503)
Q Consensus 234 s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s 296 (503)
+| ..+.+.+.. ++|.++|. +.||+. .+++.|.++|+|+|++.++ .+.|..
T Consensus 237 ~~--~~~~~~~~~-~~~~~g~~---~~KDl~------~~~~~a~~~g~~~pl~~~~-~~~~~~ 286 (317)
T 4ezb_A 237 DW--RDVADYYLS-RTFEHGAR---RVTEMT------EAAETIESFGLNAPMSRAA-CETIAA 286 (317)
T ss_dssp CH--HHHHHHHHH-HHHHHHHH---HHHHHH------HHHHHHHTTTCCCHHHHHH-HHHHHH
T ss_pred cH--HHhhhhhhc-CCCCCCcc---hHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 33 223333322 33556665 367775 8999999999999998865 455433
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-31 Score=264.46 Aligned_cols=257 Identities=21% Similarity=0.347 Sum_probs=225.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+|+|+|||+|.||..+|.+|++.|++|++|||++++.+.+.+.+ +..+.+++++++. +|+||+|+|.+.+
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~D~vi~~vp~~~~ 73 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQG-------AQACENNQKVAAA---SDIIFTSLPNAGI 73 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTT-------CEECSSHHHHHHH---CSEEEECCSSHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-------CeecCCHHHHHhC---CCEEEEECCCHHH
Confidence 46899999999999999999999999999999999988877643 4667889998887 9999999998778
Q ss_pred HHHHHH---HHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHH
Q 010702 86 VDQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (503)
Q Consensus 86 v~~vl~---~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~l 161 (503)
++.++. ++.+.+.++++||+++++.+...+++.+.+.++|++|+++|+++++..+..|. .+++||+++.++.++++
T Consensus 74 ~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~l 153 (301)
T 3cky_A 74 VETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPV 153 (301)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHH
Confidence 888885 78888999999999999998888888888888899999999999998888898 88889999999999999
Q ss_pred HHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhh
Q 010702 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241 (503)
Q Consensus 162 l~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~ 241 (503)
|+.++ .+++++++.|.|..+|+++|.+.+..++++.|++.++++.| ++++++.+++. .+...++.+..+.
T Consensus 154 l~~~g------~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~~---~~~~~~~~~~~~~ 223 (301)
T 3cky_A 154 LSVIG------KDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCG-LKPETMQEIIG---KSSGRSYAMEAKM 223 (301)
T ss_dssp HHHHE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---TSTTCBHHHHHHC
T ss_pred HHHhc------CCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---cCCCCCHHHHHhh
Confidence 99999 67888999999999999999999999999999999999999 99999988874 4445566666555
Q ss_pred h-hccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 242 D-IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 242 ~-~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
+ .+.. +++.+++.++.+.||++ ++++.++++|+|+|+..+.
T Consensus 224 ~~~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~~ 265 (301)
T 3cky_A 224 EKFIMS-GDFAGGFAMDLQHKDLG------LALEAGKEGNVPLPMTAMA 265 (301)
T ss_dssp CCCCCT-CCCSSSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH
T ss_pred hhhhhc-CCCCCCccHHHHHHHHH------HHHHHHHHhCCCChHHHHH
Confidence 5 3333 45778899999999985 8999999999999998864
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-31 Score=262.77 Aligned_cols=257 Identities=23% Similarity=0.345 Sum_probs=222.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
+||+|+|||+|.||..+|.+|++.|++|++|| ++++.+.+.+.+ +..+.+++++++. +|+||+|+|.+.
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g-------~~~~~~~~~~~~~---~D~vi~~vp~~~ 70 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLG-------AVNVETARQVTEF---ADIIFIMVPDTP 70 (295)
T ss_dssp --CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTT-------CBCCSSHHHHHHT---CSEEEECCSSHH
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcC-------CcccCCHHHHHhc---CCEEEEECCCHH
Confidence 35799999999999999999999999999999 998888877653 4557789888877 999999999977
Q ss_pred hHHHHHH---HHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHH
Q 010702 85 PVDQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRD 160 (503)
Q Consensus 85 ~v~~vl~---~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ 160 (503)
+++.++. ++.+.+.++++||+++++.+...+++.+.+.++|++|+++|+++++..+..|. .+++||+++.++++++
T Consensus 71 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~ 150 (295)
T 1yb4_A 71 QVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKP 150 (295)
T ss_dssp HHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHH
Confidence 7888887 78888889999999999988888888888888899999999999988888888 8888999999999999
Q ss_pred HHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhh
Q 010702 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEIT 240 (503)
Q Consensus 161 ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~ 240 (503)
+|+.++ ..++++++.|.+..+|+++|.+.+..++++.|++.++++.| ++++++.+++ ..+...++.+...
T Consensus 151 ll~~~g------~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~~~ 220 (295)
T 1yb4_A 151 LFDILG------KNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-ADPVRVRQAL---MGGFASSRILEVH 220 (295)
T ss_dssp HHHHHE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TSSSSCBHHHHHH
T ss_pred HHHHhc------CCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcCCCCCHHHHHh
Confidence 999999 67899999999999999999999999999999999999999 9999888886 4455566666544
Q ss_pred hhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 241 ~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
...+.. +++.+++.++.+.||++ ++++.++++|+|+|++.++
T Consensus 221 ~~~~~~-~~~~~g~~~~~~~kd~~------~~~~~a~~~g~~~p~~~~~ 262 (295)
T 1yb4_A 221 GERMIN-RTFEPGFKIALHQKDLN------LALQSAKALALNLPNTATC 262 (295)
T ss_dssp HHHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH
T ss_pred hHHHhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH
Confidence 444443 45778889999999985 8899999999999998864
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=260.26 Aligned_cols=257 Identities=19% Similarity=0.291 Sum_probs=220.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|+|+|||+|.||..+|.+|+++|++|++|||++++.+.+.+.+ +..+.+++++++. +|+||+|+|.+..+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~Dvvi~~vp~~~~~ 70 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAG-------EQVVSSPADVAEK---ADRIITMLPTSINA 70 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTT-------CEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCCHHHH
Confidence 5899999999999999999999999999999999988877643 5667889998887 99999999987788
Q ss_pred HHHHHH---HHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010702 87 DQTIAA---LSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (503)
Q Consensus 87 ~~vl~~---l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll 162 (503)
+.++.+ +.+.+.++++||++++..+...+++.+.+.+++..|+++|+++|+..+..|. .+++|++++.++.++++|
T Consensus 71 ~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~ 150 (296)
T 2gf2_A 71 IEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELL 150 (296)
T ss_dssp HHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHH
T ss_pred HHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHH
Confidence 888875 4456788999999888888877777777777789999999999988888888 888999999999999999
Q ss_pred HHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhh
Q 010702 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (503)
Q Consensus 163 ~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (503)
+.+| .++++++..|.|+..|+++|.+.+..+.+++|++.++++.| ++++++.+++. .+.+.+++++...+
T Consensus 151 ~~~g------~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G-~~~~~~~~~~~---~~~~~~~~~~~~~~ 220 (296)
T 2gf2_A 151 GCMG------SNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLG-LDPKLLAKILN---MSSGRCWSSDTYNP 220 (296)
T ss_dssp TTTE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---TSTTCBHHHHHSCS
T ss_pred HHHc------CCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hCcccCHHHHhcCC
Confidence 9999 67889999999999999999999999999999999999999 99999999874 35556676654321
Q ss_pred ---hcc---ccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 243 ---IFK---VKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 243 ---~l~---~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
.++ ...+|.++|.++.+.||++ ++++.|+++|+|+|+...+
T Consensus 221 ~~~~l~~s~~~~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~~ 267 (296)
T 2gf2_A 221 VPGVMDGVPSANNYQGGFGTTLMAKDLG------LAQDSATSTKSPILLGSLA 267 (296)
T ss_dssp STTTCSSSGGGGTTCSSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH
T ss_pred cccccccchhccCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH
Confidence 111 1135677899999999985 8999999999999998864
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=259.06 Aligned_cols=253 Identities=23% Similarity=0.305 Sum_probs=219.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
||+|+|||+|.||..+|.+|++ |++|++|||++++.+.+.+.+. ..+. +++++.. +|+||+|+|++..
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~-------~~~~-~~~~~~~---~D~vi~~v~~~~~ 68 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFG-------SEAV-PLERVAE---ARVIFTCLPTTRE 68 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHC-------CEEC-CGGGGGG---CSEEEECCSSHHH
T ss_pred CCeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCC-------cccC-HHHHHhC---CCEEEEeCCChHH
Confidence 3689999999999999999999 9999999999999888876542 3344 6666666 9999999998766
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQK 164 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll~~ 164 (503)
++.+++++.+.+.++++||++|+..+...+++.+.+.++|++|+++|+++++..+..|+ .+++|++++.+++++++| .
T Consensus 69 ~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~ 147 (289)
T 2cvz_A 69 VYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-A 147 (289)
T ss_dssp HHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-T
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-h
Confidence 89999999898999999999999988888888888888889999999999998888888 888899999999999999 9
Q ss_pred HhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhh--
Q 010702 165 VAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD-- 242 (503)
Q Consensus 165 ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~-- 242 (503)
++ ..++++++.+.++++|+++|.+.+..+++++|++.++++.| ++++++.+++ ..+...+++++.+.+
T Consensus 148 ~g------~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~~~~~~~ 217 (289)
T 2cvz_A 148 YA------KKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQG-VSAEKALEVI---NASSGRSNATENLIPQR 217 (289)
T ss_dssp TE------EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCBHHHHHTHHHH
T ss_pred hc------CCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cCHHHHHHHH---HccCCCCHHHHHhccch
Confidence 99 67889999999999999999999999999999999999999 9999988887 345556677765555
Q ss_pred hccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 243 ~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
++. +++.+++.++.+.||++ ++++.++++|+|+|+..+.
T Consensus 218 ~l~--~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~v 256 (289)
T 2cvz_A 218 VLT--RAFPKTFALGLLVKDLG------IAMGVLDGEKAPSPLLRLA 256 (289)
T ss_dssp TTT--SCCCCSSBHHHHHHHHH------HHHHHHTTTCCCCHHHHHH
T ss_pred hhc--CCCCCCcChHHHHHHHH------HHHHHHHHcCCCChHHHHH
Confidence 433 45678899999999885 8999999999999998854
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=255.76 Aligned_cols=256 Identities=19% Similarity=0.301 Sum_probs=220.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|+|+|||+|.||..+|.+|++.|++|.+|||++++.+.+.+.+ +....++++++++ +|+||+|+|++..+
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~DvVi~av~~~~~~ 100 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEG-------ARLGRTPAEVVST---CDITFACVSDPKAA 100 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTT-------CEECSCHHHHHHH---CSEEEECCSSHHHH
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcC-------CEEcCCHHHHHhc---CCEEEEeCCCHHHH
Confidence 6899999999999999999999999999999999988877643 4567788888877 99999999977788
Q ss_pred HHHHHHH---HhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010702 87 DQTIAAL---SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (503)
Q Consensus 87 ~~vl~~l---~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll 162 (503)
+.++.++ .+.+.++++||+++|..+...+++.+.+..+++.|+++|++|++..+..|+ .++++|+++.++.++++|
T Consensus 101 ~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~ll 180 (316)
T 2uyy_A 101 KDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCF 180 (316)
T ss_dssp HHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHHH
T ss_pred HHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHHH
Confidence 8888654 477889999999999998888888888877789999999999988888898 778889999999999999
Q ss_pred HHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhh
Q 010702 163 QKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITAD 242 (503)
Q Consensus 163 ~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~ 242 (503)
+.+| ..++++|+.|.+...|++.|.+....+.++.|++.++++.| ++++++.+++. .+...++.+....+
T Consensus 181 ~~~g------~~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G-~~~~~~~~~~~---~~~~~s~~~~~~~~ 250 (316)
T 2uyy_A 181 QAMG------KTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTG-QSQQTLLDILN---QGQLASIFLDQKCQ 250 (316)
T ss_dssp HHHE------EEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---HSTTCCHHHHHHHH
T ss_pred HHhc------CCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---cCCCCCHHHHHhhH
Confidence 9999 67889999999999999999999999999999999999999 99999988874 34555666554443
Q ss_pred hccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 243 IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 243 ~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
.+.+ +++.+++.++.+.+|++ ++++.++++|+|+|+..++
T Consensus 251 ~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~v 290 (316)
T 2uyy_A 251 NILQ-GNFKPDFYLKYIQKDLR------LAIALGDAVNHPTPMAAAA 290 (316)
T ss_dssp HHHH-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH
T ss_pred Hhhc-CCCCCCCcHHHHHHHHH------HHHHHHHHhCCCChHHHHH
Confidence 3333 44778899999888875 8999999999999998864
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-28 Score=252.53 Aligned_cols=251 Identities=16% Similarity=0.138 Sum_probs=206.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc---------------ccCCCCeeeeCCHHHHHhccC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH---------------REGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------------~~g~~~i~~~~s~~e~~~~l~ 71 (503)
.+|+|||+|.||.++|.+|+++||+|++|||++++++.+.+... ..+ +++.++++++++++
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g--~l~~ttd~~ea~~~-- 84 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAG--RLSFTTDLAEGVKD-- 84 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTT--CEEEESCHHHHHTT--
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccC--CEEEECCHHHHHhc--
Confidence 48999999999999999999999999999999999998875310 011 46788999988887
Q ss_pred CCcEEEEecCCCh----------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhh
Q 010702 72 RPRSVIILVKAGS----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGAR 141 (503)
Q Consensus 72 ~~dvIil~vp~~~----------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~ 141 (503)
+|+||+|||++. .++++++++.+.+++|++||++||+.|.+++++.+.+.+.+.. .+.++.++|+.++
T Consensus 85 -aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~-~d~~v~~~Pe~a~ 162 (446)
T 4a7p_A 85 -ADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPN-SGAKVVSNPEFLR 162 (446)
T ss_dssp -CSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTT-SCCEEEECCCCCC
T ss_pred -CCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCC-CCceEEeCccccc
Confidence 999999998874 5899999999999999999999999999999999888876544 5666777777666
Q ss_pred cCC---------cccCCCC-HHHHHHHHHHHHHHhcccCCCCc---EEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHH
Q 010702 142 HGP---------SLMPGGS-FEAYNNIRDILQKVAAQVDDGPC---VTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDV 208 (503)
Q Consensus 142 ~G~---------~i~~gg~-~~a~~~v~~ll~~ig~~~~~~~~---v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l 208 (503)
.|. .+++|++ +++.++++++|+.++ +. ++++++.+.|+.+|+++|.+.+..+++++|+..+
T Consensus 163 eG~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~------~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l 236 (446)
T 4a7p_A 163 EGAAIEDFKRPDRVVVGTEDEFARQVMREIYRPLS------LNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADL 236 (446)
T ss_dssp TTSHHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----------CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCCCEEEEeCCcHHHHHHHHHHHHHHh------cCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 664 6788885 899999999998877 43 6889999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHH
Q 010702 209 LKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (503)
Q Consensus 209 ~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~ 288 (503)
+++.| +|++++.+++. .+.- +....+. .+++|-...+.||.. ..+..|.++|+++|++.+
T Consensus 237 ~~~~G-iD~~~v~~~~~---~~~r------ig~~~l~----pg~G~gg~c~~KD~~------~l~~~A~~~g~~~~l~~~ 296 (446)
T 4a7p_A 237 CEQVG-ADVQEVSRGIG---MDNR------IGGKFLH----AGPGYGGSCFPKDTL------ALMKTAADNETPLRIVEA 296 (446)
T ss_dssp HHHTT-CCHHHHHHHHH---TSTT------C---CCC----CCSCCCTTTHHHHHH------HHHHHHHHTTCCCHHHHH
T ss_pred HHHcC-CCHHHHHHHHh---cCCC------CCCccCC----CCCCcchhhHHHHHH------HHHHHHHhcCCCCHHHHH
Confidence 99999 99999999973 2210 0011121 134566678888874 788899999999999987
Q ss_pred H
Q 010702 289 S 289 (503)
Q Consensus 289 A 289 (503)
+
T Consensus 297 ~ 297 (446)
T 4a7p_A 297 T 297 (446)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=250.94 Aligned_cols=255 Identities=13% Similarity=0.074 Sum_probs=204.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc---------------ccCCCCeeeeCCHHHHHhcc
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH---------------REGQLPLTGHYTPRDFVLSI 70 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------------~~g~~~i~~~~s~~e~~~~l 70 (503)
+|||+|||+|.||.++|.+|+++||+|++||+++++++.+.+... ..+ ++..+++++++++.
T Consensus 2 ~mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~--~l~~t~d~~ea~~~- 78 (450)
T 3gg2_A 2 SLDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAG--RLRFGTEIEQAVPE- 78 (450)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTT--SEEEESCHHHHGGG-
T ss_pred CCEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccC--cEEEECCHHHHHhc-
Confidence 379999999999999999999999999999999999988875210 011 46778899998887
Q ss_pred CCCcEEEEecCCCh---------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc---EecccCCCChh
Q 010702 71 QRPRSVIILVKAGS---------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL---YLGMGVSGGEE 138 (503)
Q Consensus 71 ~~~dvIil~vp~~~---------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~---~i~~pvsgg~~ 138 (503)
+|+||+|||++. .++++++++.+.+++|++||+.||+.|.+++++.+.+.+.+.. ..+.++.++|+
T Consensus 79 --aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe 156 (450)
T 3gg2_A 79 --ADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPE 156 (450)
T ss_dssp --CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCC
T ss_pred --CCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechh
Confidence 999999999874 7999999999999999999999999999999988877765322 24556666666
Q ss_pred hhhcCC---------cccCCC-CHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHH
Q 010702 139 GARHGP---------SLMPGG-SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDV 208 (503)
Q Consensus 139 ~a~~G~---------~i~~gg-~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l 208 (503)
.++.|. .+++|| ++++.++++++|+.++.+ ..++++++.+.++++|+++|.+.+..+++++|+..+
T Consensus 157 ~a~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~----~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l 232 (450)
T 3gg2_A 157 FLKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLN----NFRVLFMDIASAEMTKYAANAMLATRISFMNDVANL 232 (450)
T ss_dssp CCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCS----CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcC----CCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554 477787 589999999999988711 136788899999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHH
Q 010702 209 LKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (503)
Q Consensus 209 ~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~ 288 (503)
+++.| +|++++.+++. .+. .+....+. .+++|-...+.||.. ..+..|.++|+++|++.+
T Consensus 233 ~~~~G-id~~~v~~~~~---~~~------rig~~~~~----pg~G~gg~c~~KD~~------~l~~~a~~~g~~~~l~~~ 292 (450)
T 3gg2_A 233 CERVG-ADVSMVRLGIG---SDS------RIGSKFLY----PGCGYGGSCFPKDVK------ALIRTAEDNGYRMEVLEA 292 (450)
T ss_dssp HHHHT-CCHHHHHHHHH---TST------TTCSSSCC----CSSCCCSSHHHHHHH------HHHHHHHHTTCCCHHHHH
T ss_pred HHHhC-CCHHHHHHHHc---CCC------CCCcccCC----CCCCCCcccHHhhHH------HHHHHHHHcCCCcHHHHH
Confidence 99999 99999999973 221 00001111 123456667888874 788899999999999987
Q ss_pred H
Q 010702 289 S 289 (503)
Q Consensus 289 A 289 (503)
+
T Consensus 293 ~ 293 (450)
T 3gg2_A 293 V 293 (450)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=242.92 Aligned_cols=253 Identities=11% Similarity=0.033 Sum_probs=201.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CC-cEEEEeCChh----HHHHHHHhhc-----------------ccCCCCeeeeCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GF-PISVYNRTTS----KVDETLDRAH-----------------REGQLPLTGHYT 62 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~-~V~v~dr~~~----~~~~l~~~~~-----------------~~g~~~i~~~~s 62 (503)
+|||+|||+|.||.++|.+|+++ || +|++||++++ +++.+.+... ..+ ++..+++
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g--~l~~ttd 95 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAG--KFECTPD 95 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTT--CEEEESC
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccC--CeEEeCc
Confidence 57999999999999999999999 99 9999999999 8888764210 011 3566666
Q ss_pred HHHHHhccCCCcEEEEecCCCh-----------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHH--hcC----
Q 010702 63 PRDFVLSIQRPRSVIILVKAGS-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QKG---- 125 (503)
Q Consensus 63 ~~e~~~~l~~~dvIil~vp~~~-----------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~--~~g---- 125 (503)
.+++++ +|+||+|||++. .+..+.+++.+.+++|++||+.||+.|.+++++.+.+. ..|
T Consensus 96 -~ea~~~---aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~~ 171 (478)
T 3g79_A 96 -FSRISE---LDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAG 171 (478)
T ss_dssp -GGGGGG---CSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCBT
T ss_pred -HHHHhc---CCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCcC
Confidence 566666 999999999863 36777789999999999999999999999998886443 234
Q ss_pred --ccEecccCCCChhhhhc----CCcccCCCCHHHHHHHHHHHHHH-hcccCCCCcEEEeCCcchhHHHHhHHHHHHHHH
Q 010702 126 --LLYLGMGVSGGEEGARH----GPSLMPGGSFEAYNNIRDILQKV-AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGD 198 (503)
Q Consensus 126 --i~~i~~pvsgg~~~a~~----G~~i~~gg~~~a~~~v~~ll~~i-g~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~ 198 (503)
+.++++|.++.+-.+.. .+.++.|++++.+++++++|+.+ + ..++++++.++|+.+|+++|.+.+..
T Consensus 172 ~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~------~~~~~~~~~~~aE~~Kl~~N~~~a~~ 245 (478)
T 3g79_A 172 EDFALAHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLT------VGQVIPMSATAAEVTKTAENTFRDLQ 245 (478)
T ss_dssp TTBEEEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCS------SCCEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CceeEEeCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhcc------CCeEEeCCHHHHHHHHHHHHHHHHHH
Confidence 46889998876655433 23788999999999999999999 7 56899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCch--hHHHHHhhcCCcchHHHHHHHH
Q 010702 199 MQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGE--LVDKILDKTGMKGTGKWTVQQA 276 (503)
Q Consensus 199 ~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~--~ld~i~~~~~~kgtG~~~~~~A 276 (503)
+++++|+..++++.| +|.+++.+++. .. .++ .+.. ..|.|++ --..+.||.. ..+..|
T Consensus 246 Ia~~nE~~~l~e~~G-iD~~~v~~~~~---~~---~~~-ri~~------~~~~PG~G~GG~c~~KD~~------~l~~~a 305 (478)
T 3g79_A 246 IAAINQLALYCEAMG-INVYDVRTGVD---SL---KGE-GITR------AVLWPGAGVGGHCLTKDTY------HLERGV 305 (478)
T ss_dssp HHHHHHHHHHHHHTT-CCHHHHHHHHH---TS---CCS-SSCC------CCCCCCSCCCSSHHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHC---CC---chh-hhcc------ccCCCCCCcchhhHHHHHH------HHHHHH
Confidence 999999999999999 99999999974 21 111 1111 2244443 3456778874 788899
Q ss_pred HHcCCC-------cchHHHHH
Q 010702 277 AELSVA-------APTIAASL 290 (503)
Q Consensus 277 ~~~gvp-------~p~~~~Av 290 (503)
.++|++ .|++.++.
T Consensus 306 ~~~g~~~~~~~~~~~li~~~~ 326 (478)
T 3g79_A 306 KIGRGELDYPEGADSIYVLAR 326 (478)
T ss_dssp TTSSCCCCCCSSCCCHHHHHH
T ss_pred HHcCCCcccccchhHHHHHHH
Confidence 999988 88888763
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-26 Score=222.25 Aligned_cols=244 Identities=15% Similarity=0.154 Sum_probs=192.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeC--ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNR--TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr--~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
|+|+|||+|.||..||.+|+++||+|++||| +++..+++.+.+ +. .+++++++. +|+||+|||+..
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g-------~~--~~~~~~~~~---aDvvi~~v~~~~ 68 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVG-------VT--ETSEEDVYS---CPVVISAVTPGV 68 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHT-------CE--ECCHHHHHT---SSEEEECSCGGG
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCC-------Cc--CCHHHHHhc---CCEEEEECCCHH
Confidence 5899999999999999999999999999999 777777776643 34 677888777 999999999975
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHH
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQK 164 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~ 164 (503)
.++. +.++.+.+.+ +|||+++..+...+++.+.+.+.| |+++|+++++..+..|..++++|+.+ +++++ |+.
T Consensus 69 ~~~~-~~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~g--~~~~~v~~~~~~~~~g~~~~~~g~~~--~~~~~-l~~ 140 (264)
T 1i36_A 69 ALGA-ARRAGRHVRG--IYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIRIIASGRDA--EEFMK-LNR 140 (264)
T ss_dssp HHHH-HHHHHTTCCS--EEEECSCCCHHHHHHHHHHCSSSE--EEEEEECSCHHHHGGGCEEEEESTTH--HHHHG-GGG
T ss_pred HHHH-HHHHHHhcCc--EEEEccCCCHHHHHHHHHHHhhCC--eeeeeeeCCccccccCCeEEecCCcH--HHhhh-HHH
Confidence 5555 4678777765 999999998888888888777766 89999999998888887777788766 78889 999
Q ss_pred HhcccCCCCcEEEeCC-cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhh
Q 010702 165 VAAQVDDGPCVTYIGE-GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADI 243 (503)
Q Consensus 165 ig~~~~~~~~v~~~G~-~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~ 243 (503)
+| .+++++++ .|.+..+|+++|.+.+..+.+++|++.++++.| ++++ ..+.+. .+.+.+++. .. +.
T Consensus 141 ~g------~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G-~~~~-~~~~~~---~~~g~~~~~-~~-~~ 207 (264)
T 1i36_A 141 YG------LNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLG-LEED-VLEMLE---YTEGNDFRE-SA-IS 207 (264)
T ss_dssp GT------CEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHH-HHHHHH---TTSCSSTHH-HH-HH
T ss_pred cC------CeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHH-HHHHHH---HhcCccHHH-HH-HH
Confidence 99 78899998 799999999999999999999999999999999 9886 666653 332334432 22 22
Q ss_pred ccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHH
Q 010702 244 FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYL 295 (503)
Q Consensus 244 l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~ 295 (503)
+.. .++.+++. ..+++. .+++.++++ +|+|++.++ .+.+.
T Consensus 208 ~~~-~~~~~g~~---~~~~~~------~~~~~a~~~-v~~p~~~~v-~~~~~ 247 (264)
T 1i36_A 208 RLK-SSCIHARR---RYEEMK------EVQDMLAEV-IDPVMPTCI-IRIFD 247 (264)
T ss_dssp HHH-HHHHTHHH---HHHHHH------HHHHHHHTT-SCCSHHHHH-HHHHH
T ss_pred Hhc-CCCCcchh---hHHHHH------HHHHHHHHh-cCchHHHHH-HHHHH
Confidence 222 23555555 345553 788999999 999998864 44443
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-25 Score=230.38 Aligned_cols=207 Identities=15% Similarity=0.134 Sum_probs=175.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-----------ccCCCCeeeeCCHHHHHhccCCCc
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-----------REGQLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-----------~~g~~~i~~~~s~~e~~~~l~~~d 74 (503)
+|||+|||+|.||.++|..|++ |++|++||+++++++.+.+... ..+..+++.++++++++++ +|
T Consensus 36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~---aD 111 (432)
T 3pid_A 36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRN---AD 111 (432)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTT---CS
T ss_pred CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhC---CC
Confidence 5799999999999999999998 9999999999999988765210 0000146788899888887 99
Q ss_pred EEEEecCCC----------hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcC-
Q 010702 75 SVIILVKAG----------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHG- 143 (503)
Q Consensus 75 vIil~vp~~----------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G- 143 (503)
+||+|||++ ..++++++++.+ +++|++||+.||+.|.+++++.+.+.+.++. .+|+++++..+..+
T Consensus 112 vViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v~--~sPe~~~~G~A~~~~ 188 (432)
T 3pid_A 112 YVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNVI--FSPEFLREGRALYDN 188 (432)
T ss_dssp EEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCEE--ECCCCCCTTSHHHHH
T ss_pred EEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccEe--ecCccCCcchhhhcc
Confidence 999999986 268888899999 9999999999999999999999888776554 49999998777554
Q ss_pred ---CcccCCCCHHHHHHHHHHHHH--HhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 010702 144 ---PSLMPGGSFEAYNNIRDILQK--VAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (503)
Q Consensus 144 ---~~i~~gg~~~a~~~v~~ll~~--ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 218 (503)
+.+|+||+++.++++.++|.. ++. ...+++++.++|+.+|+++|.+.+..+++++|+..++++.| +|.+
T Consensus 189 l~p~rIvvG~~~~~~~~~~~ll~~~~~~~-----~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~G-iD~~ 262 (432)
T 3pid_A 189 LHPSRIVIGERSARAERFADLLKEGAIKQ-----DIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESQG-LNSK 262 (432)
T ss_dssp HSCSCEEESSCSHHHHHHHHHHHHHCSSS-----SCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHH
T ss_pred cCCceEEecCCHHHHHHHHHHHHhhhccC-----CCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHH
Confidence 278999999999999999987 331 12456678999999999999999999999999999999999 9999
Q ss_pred HHHHHHH
Q 010702 219 ELAEIFD 225 (503)
Q Consensus 219 ~i~~~~~ 225 (503)
++.+++.
T Consensus 263 ~v~~~~~ 269 (432)
T 3pid_A 263 QIIEGVC 269 (432)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9999973
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-25 Score=235.00 Aligned_cols=255 Identities=12% Similarity=0.056 Sum_probs=199.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhc-----------cc-CCCCeeeeCCHHHHHhccC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAH-----------RE-GQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~-----------~~-g~~~i~~~~s~~e~~~~l~ 71 (503)
+|||+|||+|.||.++|.+|+++ |++|++|||++++++.+.+.+. .. ...++..+++++++++.
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~-- 82 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKE-- 82 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHH--
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhc--
Confidence 46999999999999999999999 8999999999999887532100 00 00036677888888887
Q ss_pred CCcEEEEecCCChh--------------HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCCh
Q 010702 72 RPRSVIILVKAGSP--------------VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (503)
Q Consensus 72 ~~dvIil~vp~~~~--------------v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~ 137 (503)
+|+||+|||++.. +.++++++.+.+.+|++||++||..+..++++.+.+.+.+..+++.++++++
T Consensus 83 -aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~P 161 (467)
T 2q3e_A 83 -ADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNP 161 (467)
T ss_dssp -CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred -CCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCH
Confidence 9999999987653 5677888999999999999999999999988888888776666778888888
Q ss_pred hhhhcCC-c--------ccCCC-----CHHHHHHHHHHHHHH-hcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHH
Q 010702 138 EGARHGP-S--------LMPGG-----SFEAYNNIRDILQKV-AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLI 202 (503)
Q Consensus 138 ~~a~~G~-~--------i~~gg-----~~~a~~~v~~ll~~i-g~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~ 202 (503)
+.+..|. . +++|| ++++.++++++|+.+ + ..++++++.+.++.+|++.|.+.+..++++
T Consensus 162 e~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g------~~~~~~~~~~~ae~~Kl~~N~~~a~~ia~~ 235 (467)
T 2q3e_A 162 EFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVP------REKILTTNTWSSELSKLAANAFLAQRISSI 235 (467)
T ss_dssp CCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSC------GGGEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhcc------CCeEEecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777 3 77888 788899999999998 5 467888999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCC
Q 010702 203 SEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVA 282 (503)
Q Consensus 203 ~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp 282 (503)
+|+..++++.| ++.+++.+++..+.. ..+ ..+.. .++|.-..+.||+. ..+..|.++|+|
T Consensus 236 nE~~~l~~~~G-id~~~v~~~~~~~~~--~~~-------~~~~p----g~g~gg~c~~kD~~------~l~~~a~~~g~~ 295 (467)
T 2q3e_A 236 NSISALCEATG-ADVEEVATAIGMDQR--IGN-------KFLKA----SVGFGGSCFQKDVL------NLVYLCEALNLP 295 (467)
T ss_dssp HHHHHHHHHHT-CCHHHHHHHHHTSTT--TCS-------SSCCC----CSCCCSSSHHHHHH------HHHHHHHHTTCH
T ss_pred HHHHHHHHHhC-cCHHHHHHHHcCCCC--CCc-------cccCC----CCCCCCccHHHHHH------HHHHHHHHcCCc
Confidence 99999999999 999999999853211 010 11111 11122234567764 778899999997
Q ss_pred --cchHHHH
Q 010702 283 --APTIAAS 289 (503)
Q Consensus 283 --~p~~~~A 289 (503)
.+++.++
T Consensus 296 ~~~~~~~~~ 304 (467)
T 2q3e_A 296 EVARYWQQV 304 (467)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 4445443
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.4e-25 Score=232.30 Aligned_cols=255 Identities=14% Similarity=0.052 Sum_probs=195.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcc---cC---------CCCeeeeCCHHHHHhcc
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHR---EG---------QLPLTGHYTPRDFVLSI 70 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~---~g---------~~~i~~~~s~~e~~~~l 70 (503)
++|||+|||+|.||.++|.+|+++ |++|++|||++++++.+.+.... .+ ..++..++++++.++.
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~- 86 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAE- 86 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhc-
Confidence 357999999999999999999998 79999999999999887642100 00 0035677888887777
Q ss_pred CCCcEEEEecCCCh--------------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh-cCc------cEe
Q 010702 71 QRPRSVIILVKAGS--------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ-KGL------LYL 129 (503)
Q Consensus 71 ~~~dvIil~vp~~~--------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~-~gi------~~i 129 (503)
+|+||+|||++. .++++++++.+.+.++++||+.||..+..++++.+.+.+ .++ .+.
T Consensus 87 --aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~ 164 (481)
T 2o3j_A 87 --ADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVL 164 (481)
T ss_dssp --CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEE
T ss_pred --CCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEE
Confidence 999999998764 388888999999999999999999999999888888877 542 133
Q ss_pred cccCCCChhhhh----cCCcccCCCCH-----HHHHHHHHHHHHHhcccCCCC-cEEEeCCcchhHHHHhHHHHHHHHHH
Q 010702 130 GMGVSGGEEGAR----HGPSLMPGGSF-----EAYNNIRDILQKVAAQVDDGP-CVTYIGEGGSGNFVKMVHNGIEYGDM 199 (503)
Q Consensus 130 ~~pvsgg~~~a~----~G~~i~~gg~~-----~a~~~v~~ll~~ig~~~~~~~-~v~~~G~~G~g~~vK~v~N~i~~~~~ 199 (503)
..|....+..+. ..+.+++|++. +++++++++|+.++ + .++++++.+.+.++|++.|.+....+
T Consensus 165 ~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~------~~~~~~~~d~~~ae~~Kl~~N~~~a~~i 238 (481)
T 2o3j_A 165 SNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWV------PRNRIITTNTWSSELSKLVANAFLAQRI 238 (481)
T ss_dssp ECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTS------CGGGEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred eCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhc------CCCeEEecCHHHHHHHHHHHHHHHHHHH
Confidence 445444332221 22267788754 67889999999998 4 67888889999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCc--hhHHHHHhhcCCcchHHHHHHHHH
Q 010702 200 QLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEG--ELVDKILDKTGMKGTGKWTVQQAA 277 (503)
Q Consensus 200 ~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~--~~ld~i~~~~~~kgtG~~~~~~A~ 277 (503)
++++|+..++++.| ++.+++.+++. .+. .+.. ..|.|+ +....+.||.. ..+..|.
T Consensus 239 a~~nE~~~la~~~G-id~~~v~~~~~---~~~----------ri~~--~~~~pg~g~gg~c~~KD~~------~l~~~A~ 296 (481)
T 2o3j_A 239 SSINSISAVCEATG-AEISEVAHAVG---YDT----------RIGS--KFLQASVGFGGSCFQKDVL------SLVYLCE 296 (481)
T ss_dssp HHHHHHHHHHHHHS-CCHHHHHHHHH---TST----------TTCS--SSCCCCSCCCSSSHHHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCHHHHHHHHc---cCC----------CCCC--CCCCCCCccCCccHHHHHH------HHHHHHH
Confidence 99999999999999 99999999873 221 0000 112333 24445677874 7788999
Q ss_pred HcCCC--cchHHHHH
Q 010702 278 ELSVA--APTIAASL 290 (503)
Q Consensus 278 ~~gvp--~p~~~~Av 290 (503)
++|+| +|++.++.
T Consensus 297 ~~g~~~~~~l~~~~~ 311 (481)
T 2o3j_A 297 SLNLPQVADYWQGVI 311 (481)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCCccchHHHHHH
Confidence 99999 89888763
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-24 Score=226.51 Aligned_cols=254 Identities=13% Similarity=0.044 Sum_probs=196.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc---cC----------CCCeeeeCCHHHHHhccCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR---EG----------QLPLTGHYTPRDFVLSIQR 72 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~---~g----------~~~i~~~~s~~e~~~~l~~ 72 (503)
.|||+|||+|.||.++|..|+++||+|++||+++++++.+.+.+.. .+ ..++..++++++.++.
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~--- 84 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAH--- 84 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHH---
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhc---
Confidence 3699999999999999999999999999999999999988764210 00 0036778888888877
Q ss_pred CcEEEEecCCC---------hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc---CccE-ecccCCCChhh
Q 010702 73 PRSVIILVKAG---------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK---GLLY-LGMGVSGGEEG 139 (503)
Q Consensus 73 ~dvIil~vp~~---------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~---gi~~-i~~pvsgg~~~ 139 (503)
+|+||+|||++ ..++++++.+.+.++++++||+.||..+.+++++.+.+.+. | .| ++.+++++++.
T Consensus 85 aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g-~~~~~~~v~~~Pe~ 163 (478)
T 2y0c_A 85 GDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKR-GGDQMFSVVSNPEF 163 (478)
T ss_dssp CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHT-TCCCCEEEEECCCC
T ss_pred CCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCC-CCCccEEEEEChhh
Confidence 99999999986 68999999999999999999999999899988887777653 3 23 45566667666
Q ss_pred hhcCC---------cccCCCC-H----HHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHH
Q 010702 140 ARHGP---------SLMPGGS-F----EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEA 205 (503)
Q Consensus 140 a~~G~---------~i~~gg~-~----~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea 205 (503)
++.|. .++.|++ + ++.+.++++|+.+..+ ..++++++.+.+.+.|++.|.+....+++++|+
T Consensus 164 ~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~ 239 (478)
T 2y0c_A 164 LKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRN----HERTLYMDVRSAEFTKYAANAMLATRISFMNEL 239 (478)
T ss_dssp CCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSS----SCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhcc----CCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554 4677775 5 7889999999887610 157888899999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhH--HHHHhhcCCcchHHHHHHHHHHcCCCc
Q 010702 206 YDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELV--DKILDKTGMKGTGKWTVQQAAELSVAA 283 (503)
Q Consensus 206 ~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l--d~i~~~~~~kgtG~~~~~~A~~~gvp~ 283 (503)
..++++.| ++.+++.+.+.. . + ++.. ..+.+++.+ ..+.+|.. ..+..|.++|+++
T Consensus 240 ~~la~~~G-id~~~v~~~i~~---~---~-------rig~--~~~~pG~g~gg~c~~kD~~------~l~~~A~~~gv~~ 297 (478)
T 2y0c_A 240 ANLADRFG-ADIEAVRRGIGS---D---P-------RIGY--HFLYAGCGYGGSCFPKDVE------ALIRTADEHGQSL 297 (478)
T ss_dssp HHHHHHTT-CCHHHHHHHHHT---S---T-------TTCS--TTCCCSSCCCSSSHHHHHH------HHHHHHHHTTCCC
T ss_pred HHHHHHhC-CCHHHHHHHHhc---C---C-------ccCc--ccCCCCcccccCcCHHHHH------HHHHHHHHcCCCc
Confidence 99999999 999999887631 0 0 0100 011222211 12344542 6778999999999
Q ss_pred chHHHH
Q 010702 284 PTIAAS 289 (503)
Q Consensus 284 p~~~~A 289 (503)
|++.++
T Consensus 298 pl~~~v 303 (478)
T 2y0c_A 298 QILKAV 303 (478)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-24 Score=222.97 Aligned_cols=202 Identities=12% Similarity=0.140 Sum_probs=170.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc---------------cCCCCeeeeCCHHHHHhccC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR---------------EGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~---------------~g~~~i~~~~s~~e~~~~l~ 71 (503)
.|..|||+|.||.++|.+|+++||+|++||+++++++.+.+.... .+ ++..+++ ++
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g--~l~~ttd-------~~ 82 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSG--KLKVSTT-------PE 82 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEESS-------CC
T ss_pred CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccC--ceEEeCc-------hh
Confidence 479999999999999999999999999999999999998763210 01 2333333 23
Q ss_pred CCcEEEEecCCCh-----------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh-cC------ccEecccC
Q 010702 72 RPRSVIILVKAGS-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ-KG------LLYLGMGV 133 (503)
Q Consensus 72 ~~dvIil~vp~~~-----------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~-~g------i~~i~~pv 133 (503)
.+|+||+|||++. .+..+.+++.+.+++|++||+.||+.|.+++++.+.+.+ .| +.++++|.
T Consensus 83 ~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe 162 (431)
T 3ojo_A 83 ASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPE 162 (431)
T ss_dssp CCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCC
T ss_pred hCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCC
Confidence 4999999999875 377778999999999999999999999999998876544 45 36788997
Q ss_pred CCChhhhhcC---C-cccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 010702 134 SGGEEGARHG---P-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVL 209 (503)
Q Consensus 134 sgg~~~a~~G---~-~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~ 209 (503)
+..+-.+.++ + .++.|+++++.++++++|+.++ +.++++++.++|+.+|+++|.+.+..+++++|+..++
T Consensus 163 ~~~~G~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~~~------~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~ 236 (431)
T 3ojo_A 163 RVLPGKILEELVHNNRIIGGVTKACIEAGKRVYRTFV------QGEMIETDARTAEMSKLMENTYRDVNIALANELTKIC 236 (431)
T ss_dssp CCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHTTTC------CSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchhhcccCCCEEEEeCCHHHHHHHHHHHHHHh------CCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665444322 3 7889999999999999999998 6678889999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 010702 210 KHVGGLSNAELAEIF 224 (503)
Q Consensus 210 ~~~g~~~~~~i~~~~ 224 (503)
++.| +|.+++.+++
T Consensus 237 e~~G-iD~~~v~~~~ 250 (431)
T 3ojo_A 237 NNLN-INVLDVIEMA 250 (431)
T ss_dssp HHTT-CCHHHHHHHH
T ss_pred HHcC-CCHHHHHHHH
Confidence 9999 9999999997
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-24 Score=223.75 Aligned_cols=251 Identities=14% Similarity=0.142 Sum_probs=192.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc---------------cCCCCeeeeCCHHHHHhccC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR---------------EGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~---------------~g~~~i~~~~s~~e~~~~l~ 71 (503)
|||+|||+|.||..+|..|+++|++|++|||++++++.+.+.+.. .| ++..+++++++++.
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g--~l~~t~~~~~~~~~-- 76 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTG--RLSGTTDFKKAVLD-- 76 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEESCHHHHHHT--
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccC--ceEEeCCHHHHhcc--
Confidence 589999999999999999999999999999999999887653100 11 36778888888777
Q ss_pred CCcEEEEecCCChh---------HHHHHHHHHhcCCC---CCEEEecCCCChhh-HHHHHHHHHhc-CccE-ecccCCCC
Q 010702 72 RPRSVIILVKAGSP---------VDQTIAALSEHMSP---GDCIIDGGNEWYLN-TERRIHEASQK-GLLY-LGMGVSGG 136 (503)
Q Consensus 72 ~~dvIil~vp~~~~---------v~~vl~~l~~~l~~---g~iIId~st~~~~~-t~~~~~~l~~~-gi~~-i~~pvsgg 136 (503)
+|+||+|||++.. ++++++++.+.+.+ +++||+.||..+.. .+.+...+.+. |..+ ++.+++++
T Consensus 77 -aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~ 155 (436)
T 1mv8_A 77 -SDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTN 155 (436)
T ss_dssp -CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEEC
T ss_pred -CCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEEC
Confidence 9999999998765 89999999998888 99999999998888 55566666664 6555 45555666
Q ss_pred hhhhhcCC---------cccCCCC-HHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHH
Q 010702 137 EEGARHGP---------SLMPGGS-FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAY 206 (503)
Q Consensus 137 ~~~a~~G~---------~i~~gg~-~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~ 206 (503)
++.+..|. .++.|++ +++.+.++++++.++ ..++. ++.+.+..+|++.|.+....+++++|+.
T Consensus 156 Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~------~~v~~-~~~~~ae~~Kl~~N~~~a~~ia~~nE~~ 228 (436)
T 1mv8_A 156 PEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELD------APIIR-KTVEVAEMIKYTCNVWHAAKVTFANEIG 228 (436)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSS------SCEEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccC------CCEEc-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554443 4677775 889999999999998 44444 7789999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCC--chhHHHHHhhcCCcchHHHHHHHHHHcCCCcc
Q 010702 207 DVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGE--GELVDKILDKTGMKGTGKWTVQQAAELSVAAP 284 (503)
Q Consensus 207 ~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~--~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p 284 (503)
.++++.| ++.+++.+++. ... .+.. . . ..+.+ ++....+.+|.. ..+..|.++|+++|
T Consensus 229 ~l~~~~G-id~~~v~~~~~---~~~--r~~~---~---~--~~~~pg~g~gg~~~~kD~~------~l~~~a~~~g~~~p 288 (436)
T 1mv8_A 229 NIAKAVG-VDGREVMDVIC---QDH--KLNL---S---R--YYMRPGFAFGGSCLPKDVR------ALTYRASQLDVEHP 288 (436)
T ss_dssp HHHHHTT-SCHHHHHHHHT---TCT--TTTT---S---S--TTCSCCSCCCSSSHHHHHH------HHHHHHHHTTCCCT
T ss_pred HHHHHhC-CCHHHHHHHhc---CCC--CCCC---c---c--cCCCCcccccCcCcHhhHH------HHHHHHHHcCCCcH
Confidence 9999999 99999988863 111 0000 0 0 11122 233334555543 67789999999999
Q ss_pred hHHHH
Q 010702 285 TIAAS 289 (503)
Q Consensus 285 ~~~~A 289 (503)
++.++
T Consensus 289 l~~~v 293 (436)
T 1mv8_A 289 MLGSL 293 (436)
T ss_dssp TGGGH
T ss_pred HHHHH
Confidence 99875
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=213.18 Aligned_cols=285 Identities=16% Similarity=0.138 Sum_probs=205.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCC-------CeeeeCCHHHHHhccCCCcEEEE
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL-------PLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~-------~i~~~~s~~e~~~~l~~~dvIil 78 (503)
+|||+|||+|.||.++|..|+++|++|++|+|++++++.+.+.+.+..++ ++..+.+++++++. +|+||+
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~---aDvVil 105 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEG---VTDILI 105 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTT---CCEEEE
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhc---CCEEEE
Confidence 46899999999999999999999999999999999999888764321000 35677889888877 999999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhH----HHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHH
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT----ERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFE 153 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t----~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~ 153 (503)
+||+ ..++++++++.+.++++++||+++++....+ +.+.+.+....+.++..|.+..+..+...+ .++.+.+++
T Consensus 106 aVp~-~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via~~~~~ 184 (356)
T 3k96_A 106 VVPS-FAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNSQ 184 (356)
T ss_dssp CCCH-HHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEEESCHH
T ss_pred CCCH-HHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEecCCHH
Confidence 9998 4899999999999999999999998766544 222333332345567777766544433333 445567899
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEeCC-----------------cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 010702 154 AYNNIRDILQKVAAQVDDGPCVTYIGE-----------------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLS 216 (503)
Q Consensus 154 a~~~v~~ll~~ig~~~~~~~~v~~~G~-----------------~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~ 216 (503)
..++++++|+..+ .+++...+ .|.+..+|+.+|.....+...++|+.+++++.| .+
T Consensus 185 ~~~~v~~lf~~~~------~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G-~~ 257 (356)
T 3k96_A 185 FSKDLIERLHGQR------FRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFG-GK 257 (356)
T ss_dssp HHHHHHHHHCCSS------EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT-CC
T ss_pred HHHHHHHHhCCCC------eeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 9999999998766 34554444 256667899999999999999999999999999 99
Q ss_pred HHHHHHHHHHhccCCcchhHHhhhhhhcccccc----CCCchhHHHHHhhcCCcchHHHHH----HHHHHcCCCcchHHH
Q 010702 217 NAELAEIFDEWNKGELESFLVEITADIFKVKDE----YGEGELVDKILDKTGMKGTGKWTV----QQAAELSVAAPTIAA 288 (503)
Q Consensus 217 ~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~----~~~~~~ld~i~~~~~~kgtG~~~~----~~A~~~gvp~p~~~~ 288 (503)
++++.+. .|.++ ++-++...+.++.. +..+..++.+.+.++|..+|..++ +.|+++|+++|++.+
T Consensus 258 ~~t~~gl-----~g~gD--l~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~ 330 (356)
T 3k96_A 258 QETLTGL-----AGLGD--LVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQ 330 (356)
T ss_dssp HHHHTST-----TTHHH--HHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred hHhhccc-----chhhH--HHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHH
Confidence 9987643 22222 22222111111111 112346677877888888886544 578999999999985
Q ss_pred HHHHHHHhcchHHHHHHHHHhc
Q 010702 289 SLDCRYLSGLKEEREKAAKVLK 310 (503)
Q Consensus 289 Av~~r~~s~~~~~r~~~~~~~~ 310 (503)
|+ +.+...++.+..+..++.
T Consensus 331 -v~-~il~~~~~~~~~~~~l~~ 350 (356)
T 3k96_A 331 -VH-RILHEDLDPQQAVQELLE 350 (356)
T ss_dssp -HH-HHHHSCCCHHHHHHHHHS
T ss_pred -HH-HHHhCCCCHHHHHHHHHc
Confidence 44 555555677777777764
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=208.36 Aligned_cols=249 Identities=13% Similarity=0.029 Sum_probs=186.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc-----------CCCCeeeeCCHHHHHhccCCCcE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE-----------GQLPLTGHYTPRDFVLSIQRPRS 75 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-----------g~~~i~~~~s~~e~~~~l~~~dv 75 (503)
|||+|||+|.||..+|.+|++ ||+|++|||++++++.+.+.+..- ...++..++++++.++. +|+
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~---aDv 76 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKE---AEL 76 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHH---CSE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcC---CCE
Confidence 589999999999999999999 999999999999998887644210 00024667788887777 999
Q ss_pred EEEecCCCh----------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhh---c
Q 010702 76 VIILVKAGS----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGAR---H 142 (503)
Q Consensus 76 Iil~vp~~~----------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~---~ 142 (503)
||+|||++. .++++++.+.+ +.++++||+.||..+..++++.+.+.+. .++.+|....+..+. .
T Consensus 77 viiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~G~a~~~~~ 153 (402)
T 1dlj_A 77 VIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDNL 153 (402)
T ss_dssp EEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHHH
T ss_pred EEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccCcchhhccc
Confidence 999999974 58999999999 8999999999999999988887766543 566777766554332 2
Q ss_pred CC-cccCCCCH-------HHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 010702 143 GP-SLMPGGSF-------EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (503)
Q Consensus 143 G~-~i~~gg~~-------~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~ 214 (503)
.+ .++.|+++ +..+.+.++|..-+.+ ...++++++.+.+.++|+++|.+.+..+++++|+..++++.|
T Consensus 154 ~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~G- 229 (402)
T 1dlj_A 154 YPSRIIVSCEENDSPKVKADAEKFALLLKSAAKK---NNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRK- 229 (402)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSC---SCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCEEEEeCCCcccchhHHHHHHHHHHHhhhhcc---CCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 23 57888876 5566677777643210 012578888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCC--chhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 215 LSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGE--GELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 215 ~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~--~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
+|.+++.+++. .+. . +.. ..+.| +|-...+.||.. ..+..| .|+|+|++.++
T Consensus 230 id~~~v~~~~~---~~~---r-------i~~--~~~~pg~g~gg~c~~kD~~------~l~~~a--~~~~~~l~~~~ 283 (402)
T 1dlj_A 230 LNSHMIIQGIS---YDD---R-------IGM--HYNNPSFGYGGYSLPKDTK------QLLANY--NNIPQTLIEAI 283 (402)
T ss_dssp CCHHHHHHHHH---TST---T-------TCS--SSCCCCSSCCSSHHHHHHH------HHHHHH--TTSSCSHHHHH
T ss_pred CCHHHHHHHhc---cCC---C-------CCc--CCCCCCCccCCccHHhhHH------HHHHHh--cCCChHHHHHH
Confidence 99999998873 221 1 111 11223 455567888873 444455 39999999876
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-23 Score=200.54 Aligned_cols=176 Identities=16% Similarity=0.158 Sum_probs=142.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--------------HHHHHHhhcccCCCCeeeeCCHHHHHhccC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK--------------VDETLDRAHREGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--------------~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~ 71 (503)
.++|||||+|.||.+||.+|+++||+|++|||++++ .+++.+.. +...+.+++++++.
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~e~~~~-- 90 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH------PHVHLAAFADVAAG-- 90 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGS------TTCEEEEHHHHHHH--
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc------CceeccCHHHHHhc--
Confidence 478999999999999999999999999999999987 44444331 12346788888887
Q ss_pred CCcEEEEecCCChhHHHHHHHH-HhcCCCCCEEEecCCC-----------ChhhHHHHHHHHHh--------cCccEecc
Q 010702 72 RPRSVIILVKAGSPVDQTIAAL-SEHMSPGDCIIDGGNE-----------WYLNTERRIHEASQ--------KGLLYLGM 131 (503)
Q Consensus 72 ~~dvIil~vp~~~~v~~vl~~l-~~~l~~g~iIId~st~-----------~~~~t~~~~~~l~~--------~gi~~i~~ 131 (503)
+|+||+|||+. .+.+++.++ .+.+ ++++|||+++. .+.+.....+.+++ +++.++++
T Consensus 91 -aDvVilavp~~-~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~a 167 (245)
T 3dtt_A 91 -AELVVNATEGA-SSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNA 167 (245)
T ss_dssp -CSEEEECSCGG-GHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSCH
T ss_pred -CCEEEEccCcH-HHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccCH
Confidence 99999999996 566777777 6777 89999999953 33333334444444 37889999
Q ss_pred cCCCChhhhhcCC-cccCCC-CHHHHHHHHHHHHHHhcccCCCC-cEEEeCCcchhHHHHhHHHHHHHHH
Q 010702 132 GVSGGEEGARHGP-SLMPGG-SFEAYNNIRDILQKVAAQVDDGP-CVTYIGEGGSGNFVKMVHNGIEYGD 198 (503)
Q Consensus 132 pvsgg~~~a~~G~-~i~~gg-~~~a~~~v~~ll~~ig~~~~~~~-~v~~~G~~G~g~~vK~v~N~i~~~~ 198 (503)
|+++++..+..|+ .++++| +++++++++++|+.++ . .++++|+.|+|+.+|+++|.+....
T Consensus 168 ~v~~~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g------~~~~~~~G~~g~a~~~k~~~~~~~~l~ 231 (245)
T 3dtt_A 168 SLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLG------HQDVIDLGDITTARGAEMLLPVWIRLW 231 (245)
T ss_dssp HHHHCGGGTGGGCCCEEEECSCHHHHHHHHHHHHHTT------CCCEEEEESGGGHHHHHTTHHHHHHHH
T ss_pred HHhcCccccCCCCeeEEEECCCHHHHHHHHHHHHHcC------CCceeccCcHHHHHHhhhhHHHHHHHH
Confidence 9999999888888 677655 6999999999999999 4 4799999999999999999977655
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-22 Score=198.13 Aligned_cols=260 Identities=17% Similarity=0.155 Sum_probs=177.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCC------CeeeeCCHHHHHhccCCCcEEEE
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL------PLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~------~i~~~~s~~e~~~~l~~~dvIil 78 (503)
+||||+|||+|.||..+|..|+++|++|++|||++++.+.+.+.+...... ++. ..+..++.+.++.+|+||+
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~vi~ 80 (316)
T 2ew2_A 2 NAMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLP-IFSPEEIDHQNEQVDLIIA 80 (316)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCC-EECGGGCCTTSCCCSEEEE
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecce-eecchhhcccCCCCCEEEE
Confidence 457999999999999999999999999999999999998887654210000 011 1134455443345999999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccCCCC--hhhhhcCC-ccc--CC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGG--EEGARHGP-SLM--PG 149 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsgg--~~~a~~G~-~i~--~g 149 (503)
|+|+. .++++++++.+.+.++++||+++|+.. ..+.+.+.+.+. |..++++++++. ......|. .++ .+
T Consensus 81 ~v~~~-~~~~v~~~l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~ 158 (316)
T 2ew2_A 81 LTKAQ-QLDAMFKAIQPMITEKTYVLCLLNGLG-HEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENIDP 158 (316)
T ss_dssp CSCHH-HHHHHHHHHGGGCCTTCEEEECCSSSC-THHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEESSG
T ss_pred Eeccc-cHHHHHHHHHHhcCCCCEEEEecCCCC-cHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecCC
Confidence 99984 789999999999999999999988654 334444444433 333444445542 12233455 443 46
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHH---------------------HHHHHHHHHHHHHH
Q 010702 150 GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGI---------------------EYGDMQLISEAYDV 208 (503)
Q Consensus 150 g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i---------------------~~~~~~~~~Ea~~l 208 (503)
++++..+.++++|+.++ ..+.+.++.+.+.+.|++.|.+ .....+++.|+..+
T Consensus 159 ~~~~~~~~~~~ll~~~g------~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~l 232 (316)
T 2ew2_A 159 SGKKFALEVVDVFQKAG------LNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAV 232 (316)
T ss_dssp GGHHHHHHHHHHHHHTT------CCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCC------CCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 68889999999999999 6788888899999999999964 24567899999999
Q ss_pred HHHhCCCCH--HHHHHHHHHhccCC--cchhHHhhhhhh-ccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCc
Q 010702 209 LKHVGGLSN--AELAEIFDEWNKGE--LESFLVEITADI-FKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAA 283 (503)
Q Consensus 209 ~~~~g~~~~--~~i~~~~~~~~~g~--~~s~l~~~~~~~-l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~ 283 (503)
+++.| +++ +.+.+.+..+.... ..++ ..+..++ .. ++..+ +.+++ | ..++.|+++|+|+
T Consensus 233 a~~~G-~~~~~~~~~~~~~~~~~~~~~~~~~-~sm~~d~~~~-------g~~~E-~~~~~-----~-~~~~~a~~~gv~~ 296 (316)
T 2ew2_A 233 AEKEA-IYLDQAEVYTHIVQTYDPNGIGLHY-PSMYQDLIKN-------HRLTE-IDYIN-----G-AVWRKGQKYNVAT 296 (316)
T ss_dssp HHHTT-CCCCHHHHHHHHHHTTCTTTTTTSC-CHHHHHHTTT-------CCCCS-GGGTH-----H-HHHHHHHHHTCCC
T ss_pred HHHcC-CCCChHHHHHHHHHHhccccCCCCC-cHHHHHHHHc-------CCcch-HHHHh-----h-HHHHHHHHhCCCC
Confidence 99998 886 46666664322211 1111 0111222 21 11122 23333 2 7889999999999
Q ss_pred chHHHH
Q 010702 284 PTIAAS 289 (503)
Q Consensus 284 p~~~~A 289 (503)
|+....
T Consensus 297 P~~~~~ 302 (316)
T 2ew2_A 297 PFCAML 302 (316)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 998854
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=190.59 Aligned_cols=185 Identities=11% Similarity=0.164 Sum_probs=140.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCC-CeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL-PLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~-~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|||||+|.||.+||.+|+ +||+|++|||++++++++.+..... .+ +++.++++++ +++ ||+||.|||++.+
T Consensus 13 ~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~-~~~~i~~~~~~~~-~~~---aDlVieavpe~~~ 86 (293)
T 1zej_A 13 MKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEE-LLSKIEFTTTLEK-VKD---CDIVMEAVFEDLN 86 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGG-GGGGEEEESSCTT-GGG---CSEEEECCCSCHH
T ss_pred CeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHH-HhCCeEEeCCHHH-HcC---CCEEEEcCcCCHH
Confidence 68999999999999999999 9999999999999998887650000 00 3677888876 565 9999999999988
Q ss_pred HHHHH-HHHHhcCCCCCEEE-ecCCCChhhHHHHHH-HHHhcCccEecccCCCChhhhhcCC--cccCC--CCHHHHHHH
Q 010702 86 VDQTI-AALSEHMSPGDCII-DGGNEWYLNTERRIH-EASQKGLLYLGMGVSGGEEGARHGP--SLMPG--GSFEAYNNI 158 (503)
Q Consensus 86 v~~vl-~~l~~~l~~g~iII-d~st~~~~~t~~~~~-~l~~~gi~~i~~pvsgg~~~a~~G~--~i~~g--g~~~a~~~v 158 (503)
++.++ .++.+ + ++.+++ |+||..+....+... ..+..|.||++ |+.+ ++ .+++| +++++++++
T Consensus 87 vk~~l~~~l~~-~-~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~-Pv~~-------~~lveiv~g~~t~~~~~~~~ 156 (293)
T 1zej_A 87 TKVEVLREVER-L-TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMN-PPHV-------MPLVEIVISRFTDSKTVAFV 156 (293)
T ss_dssp HHHHHHHHHHT-T-CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECS-STTT-------CCEEEEEECTTCCHHHHHHH
T ss_pred HHHHHHHHHhc-C-CCCEEEEECCCcCHHHHHHHhhcccceEeEEecC-cccc-------CCEEEEECCCCCCHHHHHHH
Confidence 88877 55544 4 888886 566766543322111 11234889998 5543 33 56666 599999999
Q ss_pred HHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010702 159 RDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (503)
Q Consensus 159 ~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 225 (503)
+++++.+| +.++++|+. |+++|.+. ..++|++.++++ | ++++++++++.
T Consensus 157 ~~l~~~lG------k~~v~v~d~------fi~Nrll~----~~~~EA~~l~~~-G-v~~e~id~~~~ 205 (293)
T 1zej_A 157 EGFLRELG------KEVVVCKGQ------SLVNRFNA----AVLSEASRMIEE-G-VRAEDVDRVWK 205 (293)
T ss_dssp HHHHHHTT------CEEEEEESS------CHHHHHHH----HHHHHHHHHHHH-T-CCHHHHHHHHH
T ss_pred HHHHHHcC------CeEEEeccc------ccHHHHHH----HHHHHHHHHHHh-C-CCHHHHHHHHH
Confidence 99999999 889999864 56655543 568999999999 7 89999999973
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-20 Score=190.40 Aligned_cols=252 Identities=16% Similarity=0.129 Sum_probs=180.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh---------------hcccCCCCeeeeCCHHHHHhc
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR---------------AHREGQLPLTGHYTPRDFVLS 69 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~---------------~~~~g~~~i~~~~s~~e~~~~ 69 (503)
.|.+|+|||+|.||.++|..|+++||+|+++|.++++++.+.+. ....| ++..+++++++++.
T Consensus 20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g--~l~~tt~~~~ai~~ 97 (444)
T 3vtf_A 20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSG--RLSFAESAEEAVAA 97 (444)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEECSSHHHHHHT
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcC--CeeEEcCHHHHHhc
Confidence 45689999999999999999999999999999999998877532 11111 56778889888887
Q ss_pred cCCCcEEEEecCCC---------hhHHHHHHHHHhcCC---CCCEEEecCCCChhhHHHHHHHH-HhcCccEecccCCCC
Q 010702 70 IQRPRSVIILVKAG---------SPVDQTIAALSEHMS---PGDCIIDGGNEWYLNTERRIHEA-SQKGLLYLGMGVSGG 136 (503)
Q Consensus 70 l~~~dvIil~vp~~---------~~v~~vl~~l~~~l~---~g~iIId~st~~~~~t~~~~~~l-~~~gi~~i~~pvsgg 136 (503)
+|++|+|||++ ..++++.+.+.+.++ +|++||..||+.|.+++++...+ .+.+ .-.+..+...
T Consensus 98 ---ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~-~~~~f~v~~~ 173 (444)
T 3vtf_A 98 ---TDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEA-GGVKFSVASN 173 (444)
T ss_dssp ---SSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTT-TTCCCEEEEC
T ss_pred ---CCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhC-CCCCceeecC
Confidence 99999999864 247777777777664 68999999999999999876544 3321 1112223333
Q ss_pred hhhhhcC---------CcccCCC-CHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHH
Q 010702 137 EEGARHG---------PSLMPGG-SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAY 206 (503)
Q Consensus 137 ~~~a~~G---------~~i~~gg-~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~ 206 (503)
|+..+.| +.++.|+ ++.+.+.+.++++.+. ..++.. ....+.++|++.|.+.+..+++++|..
T Consensus 174 PErl~eG~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~------~~~~~~-~~~~AE~~Kl~eN~~ravnIa~~NEla 246 (444)
T 3vtf_A 174 PEFLREGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVD------APKLVM-KPREAELVKYASNVFLALKISFANEVG 246 (444)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSC------SCEEEE-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCccccccccCCcEEEcCCCHHHHHHHHHHHhccC------CCEEEe-chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433434 2455554 6778888888887766 344444 557899999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchH
Q 010702 207 DVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTI 286 (503)
Q Consensus 207 ~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~ 286 (503)
.++++.| +|..++.+.+.. ....+. ..+...-.|++. -+-+|. +..+..|.++|++.+++
T Consensus 247 ~ice~~G-iDv~eV~~a~~~-d~rig~--------~~l~PG~G~GG~----CipkD~------~~L~~~a~~~g~~~~li 306 (444)
T 3vtf_A 247 LLAKRLG-VDTYRVFEAVGL-DKRIGR--------HYFGAGLGFGGS----CFPKDT------LAFIRFGESLGLEMAIS 306 (444)
T ss_dssp HHHHHTT-CCHHHHHHHHHT-STTSCS--------TTCCCSSCCCTT----THHHHH------HHHHHHHHHTTCCCHHH
T ss_pred HHHHHcC-CCHHHHHHHhcc-CCCCCC--------CCCCCCCCCCCc----ccCcCH------HHHHHHHHhcCCCHHHH
Confidence 9999999 999999988731 011111 112211113332 334444 14556889999999988
Q ss_pred HHH
Q 010702 287 AAS 289 (503)
Q Consensus 287 ~~A 289 (503)
.++
T Consensus 307 ~a~ 309 (444)
T 3vtf_A 307 KAV 309 (444)
T ss_dssp HHH
T ss_pred Hhh
Confidence 765
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=185.28 Aligned_cols=198 Identities=10% Similarity=0.104 Sum_probs=161.4
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 5 ~~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
|||+|+|||+ |.||..+|.+|+++|++|++|||++++.+.+.+.+ +.. .++.++++. +|+||+|||+.
T Consensus 10 mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g-------~~~-~~~~~~~~~---aDvVi~av~~~ 78 (286)
T 3c24_A 10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMG-------IPL-TDGDGWIDE---ADVVVLALPDN 78 (286)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTT-------CCC-CCSSGGGGT---CSEEEECSCHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcC-------CCc-CCHHHHhcC---CCEEEEcCCch
Confidence 4579999999 99999999999999999999999999988877643 222 356666665 99999999985
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe-cccCCCCh------hhhhcCC--------c--c
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGE------EGARHGP--------S--L 146 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~------~~a~~G~--------~--i 146 (503)
.++++++++.+.+.++.+|+|+|+..+... +.+ + ..+.+|+ .+|++|++ .....|. . +
T Consensus 79 -~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~--l~~-~-~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~ 153 (286)
T 3c24_A 79 -IIEKVAEDIVPRVRPGTIVLILDAAAPYAG--VMP-E-RADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCA 153 (286)
T ss_dssp -HHHHHHHHHGGGSCTTCEEEESCSHHHHHT--CSC-C-CTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEE
T ss_pred -HHHHHHHHHHHhCCCCCEEEECCCCchhHH--HHh-h-hCCCeEEecCCCCccccccccchhhccCcccccccceeeee
Confidence 689999999999999999999888763322 222 2 2367888 78999887 5566772 2 3
Q ss_pred cCCCCHHHHHHHHHHHHHHhcccCCCC---cEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHH
Q 010702 147 MPGGSFEAYNNIRDILQKVAAQVDDGP---CVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHV-GGLSNAELAE 222 (503)
Q Consensus 147 ~~gg~~~a~~~v~~ll~~ig~~~~~~~---~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~-g~~~~~~i~~ 222 (503)
..+++++.++.++++|+.+| . +++++++.+.+.+.|.+.|+.....+..++|++..+... | ++.+++.+
T Consensus 154 ~~~~~~~~~~~v~~l~~~~G------~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~G-l~~~~~~~ 226 (286)
T 3c24_A 154 LMQGPEEHYAIGADICETMW------SPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYG-IDRQAALD 226 (286)
T ss_dssp EEESCTHHHHHHHHHHHHHT------CSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhc------CCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHH
Confidence 35689999999999999999 6 689999888888889999999899999999988776655 8 99999988
Q ss_pred HHH
Q 010702 223 IFD 225 (503)
Q Consensus 223 ~~~ 225 (503)
++.
T Consensus 227 ~~~ 229 (286)
T 3c24_A 227 FMI 229 (286)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-21 Score=196.94 Aligned_cols=275 Identities=12% Similarity=0.040 Sum_probs=181.5
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCC-------CCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ-------LPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~-------~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
||+|||+|.||..+|.+|+++||+|++|||++++++.+.+.+..... .++..+.+++++++. +|+||+||
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDvVilav 93 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG---AEIILFVI 93 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT---CSSEEECC
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcC---CCEEEECC
Confidence 89999999999999999999999999999999999888765421000 025667788888776 99999999
Q ss_pred CCChhHHHHHHH----HHhcCCC-CCEEEecCCCChh-hHHHHHHHHHhc-CccEecccCCCChhhh---hcCC---ccc
Q 010702 81 KAGSPVDQTIAA----LSEHMSP-GDCIIDGGNEWYL-NTERRIHEASQK-GLLYLGMGVSGGEEGA---RHGP---SLM 147 (503)
Q Consensus 81 p~~~~v~~vl~~----l~~~l~~-g~iIId~st~~~~-~t~~~~~~l~~~-gi~~i~~pvsgg~~~a---~~G~---~i~ 147 (503)
|+ ..+++++.+ +.+.+.+ +++||+++++... ..+...+.+.+. +.+ ..++..++..+ ..|. .++
T Consensus 94 ~~-~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~--~~~v~~gp~~~~~~~~g~~~~~~~ 170 (366)
T 1evy_A 94 PT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSP--LLSVLAGPSFAIEVATGVFTCVSI 170 (366)
T ss_dssp CH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGG--GEEEEESSCCHHHHHTTCCEEEEE
T ss_pred Ch-HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCC--cEEEEeCCChHHHHHhCCceEEEE
Confidence 97 688999988 9888888 9999999965433 223334444432 321 11222222221 2333 344
Q ss_pred CCCCHHHHHHHHHHHHHH--hcccCCCCcEEEeCCc-----------------chhHHHHhHHHHHHHHHHHHHHHHHHH
Q 010702 148 PGGSFEAYNNIRDILQKV--AAQVDDGPCVTYIGEG-----------------GSGNFVKMVHNGIEYGDMQLISEAYDV 208 (503)
Q Consensus 148 ~gg~~~a~~~v~~ll~~i--g~~~~~~~~v~~~G~~-----------------G~g~~vK~v~N~i~~~~~~~~~Ea~~l 208 (503)
.+++++.+++++++|+.. + ..+++.++. |....+|+.+|.+.....+++.|+..+
T Consensus 171 ~~~~~~~~~~v~~ll~~~g~g------~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~l 244 (366)
T 1evy_A 171 ASADINVARRLQRIMSTGDRS------FVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDL 244 (366)
T ss_dssp ECSSHHHHHHHHHHHSCTTSS------EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHhcCCCCe------EEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHH
Confidence 567889999999999988 6 456665552 222234666888888899999999999
Q ss_pred HHHhCCCCHHHHHHH------HHHhccCCcchhHHhhhhhhccccccCCCchhHHH----------HHhhcCCcchHHHH
Q 010702 209 LKHVGGLSNAELAEI------FDEWNKGELESFLVEITADIFKVKDEYGEGELVDK----------ILDKTGMKGTGKWT 272 (503)
Q Consensus 209 ~~~~g~~~~~~i~~~------~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~----------i~~~~~~kgtG~~~ 272 (503)
+++.| ++++++.++ +.........++ ....++.. ++.++. +.++++ .+
T Consensus 245 a~a~G-i~~~~~~~~~~~~~~~~~~~s~~~~~~--~~~~~~~~-------g~~~~~~~~~~~~~~e~~~~~~------~v 308 (366)
T 1evy_A 245 TAALG-GDGSAVFGLAGLGDLQLTCSSELSRNF--TVGKKLGK-------GLPIEEIQRTSKAVAEGVATAD------PL 308 (366)
T ss_dssp HHHTT-CCCTTTTSTTTHHHHHHHHTCTTSHHH--HHHHHHHT-------TCCHHHHHC---CCCHHHHHHH------HH
T ss_pred HHHhC-CCCccccccccchhheeeecCCCCchH--HHHHHHhC-------CCCHHHHHHHcCCeeehHHHHH------HH
Confidence 99999 987655332 100000000111 00111111 111222 223432 78
Q ss_pred HHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccC
Q 010702 273 VQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEA 312 (503)
Q Consensus 273 ~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~ 312 (503)
++.|+++|+|+|+.... . +.+...++.+..+..++..+
T Consensus 309 ~~~a~~~gv~~P~~~~v-~-~~~~~~~~~~~~~~~l~~~~ 346 (366)
T 1evy_A 309 MRLAKQLKVKMPLCHQI-Y-EIVYKKKNPRDALADLLSCG 346 (366)
T ss_dssp HHHHHHHTCCCHHHHHH-H-HHHHSCCCHHHHHHHHGGGC
T ss_pred HHHHHHhCCCCcHHHHH-H-HHHHCCCCHHHHHHHHHcCC
Confidence 89999999999999854 3 55555677777777776533
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.8e-21 Score=192.71 Aligned_cols=276 Identities=11% Similarity=0.030 Sum_probs=176.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc---C-CCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE---G-QLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~---g-~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|.|||+|||+|.||+.||.+|+++|++|++|||++++++.+.+.+... + .+++..++++++ ++. +|+||+||
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~---aDvVil~v 88 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKK---EDILVIAI 88 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCT---TEEEEECS
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcC---CCEEEEEC
Confidence 457999999999999999999999999999999999999888765210 0 001456778877 665 99999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCChh-hHHHHHHHHHhcCccEecccCCCChhhhh---cCC-c-ccCCCCHHH
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYLGMGVSGGEEGAR---HGP-S-LMPGGSFEA 154 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~-~t~~~~~~l~~~gi~~i~~pvsgg~~~a~---~G~-~-i~~gg~~~a 154 (503)
|+ .++++++.++.+ ++++||+++|+... ..+.+.+.+.+... .+.++.+++..+. .|. . +..|+++
T Consensus 89 k~-~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~--~~~~~~~~P~~~~~~~~g~~~~~~~g~~~-- 160 (335)
T 1z82_A 89 PV-QYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG--CPYAVLSGPSHAEEVAKKLPTAVTLAGEN-- 160 (335)
T ss_dssp CG-GGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC--CCEEEEESSCCHHHHHTTCCEEEEEEETT--
T ss_pred CH-HHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC--CceEEEECCccHHHHhCCCceEEEEEehh--
Confidence 97 688988877655 78999999976433 33445555544311 2334344433222 454 3 3344433
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEeCCc-----------------chhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 010702 155 YNNIRDILQKVAAQVDDGPCVTYIGEG-----------------GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (503)
Q Consensus 155 ~~~v~~ll~~ig~~~~~~~~v~~~G~~-----------------G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~ 217 (503)
++.++++|+..+ ..+++.++. |.+..+|+.+|.+......++.|+..++++.| +++
T Consensus 161 ~~~~~~ll~~~g------~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G-~~~ 233 (335)
T 1z82_A 161 SKELQKRISTEY------FRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFG-ADQ 233 (335)
T ss_dssp HHHHHHHHCCSS------EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCH
T ss_pred HHHHHHHhCCCC------EEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhC-CCh
Confidence 788999998877 455555442 33345677788888889999999999999999 998
Q ss_pred HHHHHHH--HH-hccCCcchhHHhhh--hhhccccccCCCchhHHHHHhhcCC-----cchHHHHHHHHHHcCCCcchHH
Q 010702 218 AELAEIF--DE-WNKGELESFLVEIT--ADIFKVKDEYGEGELVDKILDKTGM-----KGTGKWTVQQAAELSVAAPTIA 287 (503)
Q Consensus 218 ~~i~~~~--~~-~~~g~~~s~l~~~~--~~~l~~~~~~~~~~~ld~i~~~~~~-----kgtG~~~~~~A~~~gvp~p~~~ 287 (503)
+++.++. .+ +.. ..+.+.+.+ ...+.. + +..+.+.+..++ |..| .+++.|+++|+|+|+..
T Consensus 234 ~~~~~l~~~~~~~~t--~~s~~~~n~~~~~~~~~-g-----~~~~~~~~~~g~~~e~~~~~~-~v~~~a~~~gv~~P~~~ 304 (335)
T 1z82_A 234 KTFMGLAGIGDLMVT--CNSRYSRNRRFGELIAR-G-----FNPLKLLESSNQVVEGAFTVK-AVMKIAKENKIDMPISE 304 (335)
T ss_dssp HHHTSTTTHHHHHHH--HHCTTCHHHHHHHHHHH-T-----CCHHHHHHTCSSCCTHHHHHH-HHHHHHHHTTCCCHHHH
T ss_pred hhhcccccccceeee--ccCccCcHHHHHHHHhC-C-----CCHHHHHHhcCCeeeHHHHHH-HHHHHHHHhCCCCcHHH
Confidence 8765421 00 000 001111110 111111 1 122222221121 1122 67889999999999998
Q ss_pred HHHHHHHHhcchHHHHHHHHHhc
Q 010702 288 ASLDCRYLSGLKEEREKAAKVLK 310 (503)
Q Consensus 288 ~Av~~r~~s~~~~~r~~~~~~~~ 310 (503)
+. . +.+...++.+..+..++.
T Consensus 305 ~v-~-~~~~~~~~~~~~~~~l~~ 325 (335)
T 1z82_A 305 EV-Y-RVVYEGKPPLQSMRDLMR 325 (335)
T ss_dssp HH-H-HHHHSCCCHHHHHHHHHC
T ss_pred HH-H-HHHhCCCCHHHHHHHHHc
Confidence 54 3 555566777777776654
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=176.35 Aligned_cols=226 Identities=15% Similarity=0.146 Sum_probs=160.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.||+|+|||+|.||..++.+|.+.|++|.+|||++++.+.+.+.. ++..+.++++++++ +|+||+|+|+ .
T Consensus 2 ~~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~---~D~Vi~~v~~-~ 71 (259)
T 2ahr_A 2 NAMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL------ALPYAMSHQDLIDQ---VDLVILGIKP-Q 71 (259)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH------TCCBCSSHHHHHHT---CSEEEECSCG-G
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc------CCEeeCCHHHHHhc---CCEEEEEeCc-H
Confidence 357999999999999999999999999999999999988887542 24556788888876 9999999995 5
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCC--CHHHHHHHHHH
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGG--SFEAYNNIRDI 161 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg--~~~a~~~v~~l 161 (503)
.+++++.+ +.+|++||+.+++.... .+.+.+. .+.+++. ++.+.+.....|. .+++|+ +++.++.++++
T Consensus 72 ~~~~v~~~----l~~~~~vv~~~~~~~~~--~l~~~~~-~~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l 143 (259)
T 2ahr_A 72 LFETVLKP----LHFKQPIISMAAGISLQ--RLATFVG-QDLPLLR-IMPNMNAQILQSSTALTGNALVSQELQARVRDL 143 (259)
T ss_dssp GHHHHHTT----SCCCSCEEECCTTCCHH--HHHHHHC-TTSCEEE-EECCGGGGGTCEEEEEEECTTCCHHHHHHHHHH
T ss_pred hHHHHHHH----hccCCEEEEeCCCCCHH--HHHHhcC-CCCCEEE-EcCCchHHHcCceEEEEcCCCCCHHHHHHHHHH
Confidence 66666654 44788999996554432 2333333 4566776 5666666666777 667776 89999999999
Q ss_pred HHHHhcccCCCCcEEEeCCcchhHHHHhH--HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchh-HHh
Q 010702 162 LQKVAAQVDDGPCVTYIGEGGSGNFVKMV--HNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESF-LVE 238 (503)
Q Consensus 162 l~~ig~~~~~~~~v~~~G~~G~g~~vK~v--~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~-l~~ 238 (503)
|+.+| .++++++.....++++. .|.+.+..+..++|+ +.+.| ++++++.+++.. +...++ ++.
T Consensus 144 l~~~G-------~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~---~~~~G-l~~~~~~~~~~~---~~~~~~~~~~ 209 (259)
T 2ahr_A 144 TDSFG-------STFDISEKDFDTFTALAGSSPAYIYLFIEALAKA---GVKNG-IPKAKALEIVTQ---TVLASASNLK 209 (259)
T ss_dssp HHTTE-------EEEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHhCC-------CEEEecHHHccHHHHHhccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH---HHHHHHHHHH
Confidence 99998 37888876666666663 244555666666666 66788 999999888743 333343 332
Q ss_pred hhh--h-hccccccCCCchhHHHHHhhc
Q 010702 239 ITA--D-IFKVKDEYGEGELVDKILDKT 263 (503)
Q Consensus 239 ~~~--~-~l~~~~~~~~~~~ld~i~~~~ 263 (503)
... + .++ ++.++|++.+...+|++
T Consensus 210 ~~~~~p~~l~-~~~~~p~~~~~~~~~~l 236 (259)
T 2ahr_A 210 TSSQSPHDFI-DAICSPGGTTIAGLMEL 236 (259)
T ss_dssp HSSSCHHHHH-HHHCCTTSHHHHHHHHH
T ss_pred hcCCCHHHHH-HhCCCCChhHHHHHHHH
Confidence 221 2 222 23346677777776665
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-20 Score=181.63 Aligned_cols=198 Identities=17% Similarity=0.146 Sum_probs=153.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
+|+|+|||+|.||..+|..|+++|++ |.+|||++++.+++.+.. ++..+.++++++++ +|+||+++|+.
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~---~Dvvi~av~~~- 79 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV------EAEYTTDLAEVNPY---AKLYIVSLKDS- 79 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT------TCEEESCGGGSCSC---CSEEEECCCHH-
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc------CCceeCCHHHHhcC---CCEEEEecCHH-
Confidence 46899999999999999999999999 999999999988877652 24567788877665 99999999996
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCccc-CCCCHHHHHHHHHHHH
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLM-PGGSFEAYNNIRDILQ 163 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~-~gg~~~a~~~v~~ll~ 163 (503)
.++++++++.+.++++++|++++++.+... +.+.+...+..+..+|++|++.....+..++ .|++++.++.++++|+
T Consensus 80 ~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 157 (266)
T 3d1l_A 80 AFAELLQGIVEGKREEALMVHTAGSIPMNV--WEGHVPHYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIAS 157 (266)
T ss_dssp HHHHHHHHHHTTCCTTCEEEECCTTSCGGG--STTTCSSEEEEEECCCC---CCCCCTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcEEEECCCCCchHH--HHHHHHhccCcCCceecCCCchhhcCCCeEEEecCCHHHHHHHHHHHH
Confidence 678899999888889999999999887544 3333333355566778887544332333344 4889999999999999
Q ss_pred HHhcccCCCCcEEEeCCcc---hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010702 164 KVAAQVDDGPCVTYIGEGG---SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDE 226 (503)
Q Consensus 164 ~ig~~~~~~~~v~~~G~~G---~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~ 226 (503)
.+| ..++++++.+ ....+|+++|.. +.+..++|+ ++++.| ++++++.+++..
T Consensus 158 ~~g------~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ea--l~~~~G-l~~~~~~~l~~~ 212 (266)
T 3d1l_A 158 TLS------NRVYDADSEQRKSLHLAAVFTCNFT--NHMYALAAE--LLKKYN-LPFDVMLPLIDE 212 (266)
T ss_dssp TTC------SCEEECCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHTT-CCGGGGHHHHHH
T ss_pred hcC------CcEEEeCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHcC-CCHHHHHHHHHH
Confidence 999 7899998765 456789999984 345666776 567888 999988888743
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-21 Score=190.00 Aligned_cols=252 Identities=19% Similarity=0.213 Sum_probs=169.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCC-CCee-eeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ-LPLT-GHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~-~~i~-~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
|||+|||+|.||..+|.+|+++|++|++|||++++.+.+...+. .+. +... ..++. +.++. +|+||+|||+.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~-~~~~~~~~~~~~~~-~~~~~---~d~vi~~v~~~- 74 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVET-DGSIFNESLTANDP-DFLAT---SDLLLVTLKAW- 74 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECT-TSCEEEEEEEESCH-HHHHT---CSEEEECSCGG-
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcC-CCceeeeeeeecCc-cccCC---CCEEEEEecHH-
Confidence 58999999999999999999999999999999876544322210 000 0011 23443 45555 99999999996
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh--cCccEecccCCCC-hhhhhcCC-cccC-CCCHHHHHHHH
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYLGMGVSGG-EEGARHGP-SLMP-GGSFEAYNNIR 159 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~gi~~i~~pvsgg-~~~a~~G~-~i~~-gg~~~a~~~v~ 159 (503)
.++++++++.+.+.++++||+++++. ...+.+.+.+.+ .|..+.++...+. ...+..|. .+.+ +++++.++.++
T Consensus 75 ~~~~v~~~l~~~l~~~~~vv~~~~g~-~~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~g~~~i~~~~~~~~~~~~~~ 153 (291)
T 1ks9_A 75 QVSDAVKSLASTLPVTTPILLIHNGM-GTIEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLA 153 (291)
T ss_dssp GHHHHHHHHHTTSCTTSCEEEECSSS-CTTGGGTTCCSCEEEEEECCEEEEETTEEEEEECCCEEEEESSGGGTTCTHHH
T ss_pred hHHHHHHHHHhhCCCCCEEEEecCCC-CcHHHHHHhcCCeEEEEEeEccEEcCCEEEEecccceEEccCCCCcchHHHHH
Confidence 68999999999999999999998865 222333333332 2333222222222 23344566 4443 55667788999
Q ss_pred HHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHH------------------HHHHHHHHHHHHHHHHhCCCCH--HH
Q 010702 160 DILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIE------------------YGDMQLISEAYDVLKHVGGLSN--AE 219 (503)
Q Consensus 160 ~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~------------------~~~~~~~~Ea~~l~~~~g~~~~--~~ 219 (503)
++|+.++ ..+.+.++.+.+.+.|++.|... ....+++.|+..++++.| ++. ++
T Consensus 154 ~ll~~~g------~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G-~~~~~~~ 226 (291)
T 1ks9_A 154 DILQTVL------PDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREG-HHTSAED 226 (291)
T ss_dssp HHHHTTS------SCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHT-CCCCHHH
T ss_pred HHHHhcC------CCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcC-CCCCHHH
Confidence 9999999 77888999999999999999887 677899999999999999 885 55
Q ss_pred HHHHHHHh-cc-CCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 220 LAEIFDEW-NK-GELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 220 i~~~~~~~-~~-g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
+.+.+... .. +...|.+. .++...+. ..++.+ .| ++++.|+++|+|+|+....
T Consensus 227 ~~~~~~~~~~~~~~~~ssm~---~d~~~g~~-----~e~~~~--------~g-~~~~~a~~~gv~~P~~~~~ 281 (291)
T 1ks9_A 227 LRDYVMQVIDATAENISSML---QDIRALRH-----TEIDYI--------NG-FLLRRARAHGIAVPENTRL 281 (291)
T ss_dssp HHHHHHHHHHHTTTCCCHHH---HHHHTTCC-----CSGGGT--------HH-HHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCChHH---HHHHcCCc-----cHHHHH--------HH-HHHHHHHHhCCCCCHHHHH
Confidence 53333221 11 12223232 23322111 122322 23 6889999999999998854
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-20 Score=185.89 Aligned_cols=252 Identities=16% Similarity=0.149 Sum_probs=168.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-----C-CcEEEEeCChhHHHHHHH-hhcccCC-------CCeeeeCCHHHHHhccC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-----G-FPISVYNRTTSKVDETLD-RAHREGQ-------LPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-----G-~~V~v~dr~~~~~~~l~~-~~~~~g~-------~~i~~~~s~~e~~~~l~ 71 (503)
+|||+|||+|.||..+|.+|+++ | ++|++|+| +++.+.+.+ .+..... .++...++. +.+..
T Consensus 8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 83 (317)
T 2qyt_A 8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNP-AEVGT-- 83 (317)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCH-HHHCC--
T ss_pred CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCc-cccCC--
Confidence 46899999999999999999999 9 99999999 888888876 4421000 001111333 44444
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh----cCccEecccCCCC-h-hhhhcCCc
Q 010702 72 RPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGVSGG-E-EGARHGPS 145 (503)
Q Consensus 72 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~pvsgg-~-~~a~~G~~ 145 (503)
+|+||+|||+. .++++++.+.+.+.++++||+++++. ...+.+.+.+.+ .|+.++++++++. . ..+..|..
T Consensus 84 -~D~vil~vk~~-~~~~v~~~i~~~l~~~~~iv~~~nG~-~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~~ 160 (317)
T 2qyt_A 84 -VDYILFCTKDY-DMERGVAEIRPMIGQNTKILPLLNGA-DIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADREL 160 (317)
T ss_dssp -EEEEEECCSSS-CHHHHHHHHGGGEEEEEEEEECSCSS-SHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred -CCEEEEecCcc-cHHHHHHHHHhhcCCCCEEEEccCCC-CcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCce
Confidence 99999999996 68999999999888899999998875 233444444433 3455667777642 1 22233442
Q ss_pred c-c----CCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHH-------------------HHHHH
Q 010702 146 L-M----PGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEY-------------------GDMQL 201 (503)
Q Consensus 146 i-~----~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~-------------------~~~~~ 201 (503)
. + .+++.+.+ .+.++|+..+ ..+.+.++.+.+.+.|++.|.+.. ...++
T Consensus 161 ~~ig~~~~~~~~~~~-~~~~ll~~~g------~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~ 233 (317)
T 2qyt_A 161 FYFGSGLPEQTDDEV-RLAELLTAAG------IRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSL 233 (317)
T ss_dssp EEEECCSSSCCHHHH-HHHHHHHHTT------CCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHH
T ss_pred EEEcCCCCCCcCHHH-HHHHHHHHCC------CCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 2 3 34567777 8999999998 678888999999999999998754 34589
Q ss_pred HHHHHHHHHHhCCCCHH--HHHHHHHHhccCCcchhHHhhhhhhccccccCCCch--hHHHHHhhcCCcchHHHHHHHHH
Q 010702 202 ISEAYDVLKHVGGLSNA--ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGE--LVDKILDKTGMKGTGKWTVQQAA 277 (503)
Q Consensus 202 ~~Ea~~l~~~~g~~~~~--~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~--~ld~i~~~~~~kgtG~~~~~~A~ 277 (503)
+.|++.++++.| ++++ .+.+.+....... ......++. ++..++ .++.+ .| ++++.|+
T Consensus 234 ~~E~~~v~~a~G-~~~~~~~~~~~~~~~~~~~-----~~~~~sm~~---d~~~g~~~E~~~~--------~g-~~~~~a~ 295 (317)
T 2qyt_A 234 LEEVAELFRAKY-GQVPDDVVQQLLDKQRKMP-----PESTSSMHS---DFLQGGSTEVETL--------TG-YVVREAE 295 (317)
T ss_dssp HHHHHHHHHHHT-SCCCSSHHHHHHHHHHHC----------------------------CTT--------TH-HHHHHHH
T ss_pred HHHHHHHHHHcC-CCCChHHHHHHHHHHhccC-----CCCCChHHH---HHHcCCccCHHHH--------hh-HHHHHHH
Confidence 999999999999 8864 5666654321100 000111111 122222 23332 23 7889999
Q ss_pred HcCCCcchHHHH
Q 010702 278 ELSVAAPTIAAS 289 (503)
Q Consensus 278 ~~gvp~p~~~~A 289 (503)
++|+|+|+....
T Consensus 296 ~~gv~~P~~~~~ 307 (317)
T 2qyt_A 296 ALRVDLPMYKRM 307 (317)
T ss_dssp HTTCCCHHHHHH
T ss_pred HcCCCCCHHHHH
Confidence 999999998754
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-20 Score=188.93 Aligned_cols=284 Identities=12% Similarity=0.081 Sum_probs=184.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC-------CcEEEEeCChh-----HHHHHHHhhccc----C---CCCeeeeCCHHH
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKG-------FPISVYNRTTS-----KVDETLDRAHRE----G---QLPLTGHYTPRD 65 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~~~~~----g---~~~i~~~~s~~e 65 (503)
|||||+|||+|.||.+||.+|+++| ++|++|||+++ +++.+.+.+... + ..++..++++++
T Consensus 20 ~~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~e 99 (375)
T 1yj8_A 20 GPLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLAS 99 (375)
T ss_dssp SCBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHH
Confidence 4579999999999999999999999 99999999998 888776643210 0 003567788888
Q ss_pred HHhccCCCcEEEEecCCChhHHHHHHHHHh----cCCCCCEEEecCCCChh---hHHHHHHHHHhc-CccEecccCCCCh
Q 010702 66 FVLSIQRPRSVIILVKAGSPVDQTIAALSE----HMSPGDCIIDGGNEWYL---NTERRIHEASQK-GLLYLGMGVSGGE 137 (503)
Q Consensus 66 ~~~~l~~~dvIil~vp~~~~v~~vl~~l~~----~l~~g~iIId~st~~~~---~t~~~~~~l~~~-gi~~i~~pvsgg~ 137 (503)
+++. +|+||++||+ ..+++++.++.+ .+.++++||+++++... ..+.+.+.+.+. + ...++..++
T Consensus 100 a~~~---aDvVilav~~-~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~---~~~~v~~gp 172 (375)
T 1yj8_A 100 VIND---ADLLIFIVPC-QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLN---IPCSALSGA 172 (375)
T ss_dssp HHTT---CSEEEECCCH-HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSS---SCEEEEECS
T ss_pred HHcC---CCEEEEcCCH-HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcC---CCEEEEeCC
Confidence 8776 9999999997 689999999998 89899999999976443 122333333332 2 122333333
Q ss_pred hhh---hcCC---cccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCc-----------------chhHHHHhHHHHH
Q 010702 138 EGA---RHGP---SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG-----------------GSGNFVKMVHNGI 194 (503)
Q Consensus 138 ~~a---~~G~---~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~-----------------G~g~~vK~v~N~i 194 (503)
..+ ..|. .++.+++++..++++++|+..+ ..+++.++. |....+|+.+|..
T Consensus 173 ~~a~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g------~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~ 246 (375)
T 1yj8_A 173 NIAMDVAMENFSEATIGGNDKDSLVIWQRVFDLPY------FKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSK 246 (375)
T ss_dssp CCHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTT------EEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred chHHHHHhCCCeEEEEecCCHHHHHHHHHHhCCCC------eEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHH
Confidence 222 2333 4456778899999999999887 456666653 2223346668888
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCHHHHHH------HHHHhccCCcchhHHhhhhhhccc-cccCCCchhHHHHHhhc--C
Q 010702 195 EYGDMQLISEAYDVLKHVG-GLSNAELAE------IFDEWNKGELESFLVEITADIFKV-KDEYGEGELVDKILDKT--G 264 (503)
Q Consensus 195 ~~~~~~~~~Ea~~l~~~~g-~~~~~~i~~------~~~~~~~g~~~s~l~~~~~~~l~~-~~~~~~~~~ld~i~~~~--~ 264 (503)
.....+++.|+..++++.| |++++++.+ ++..- ....++.+ ...+.. .+.+ .++.+.+++ +
T Consensus 247 ~a~~~~~~~E~~~la~a~G~G~~~~~~~~~~g~~dl~~t~--~~~~~~~~---~~~~~~~g~~~----~~~d~~~~~~~g 317 (375)
T 1yj8_A 247 SAIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSF--LAGRNAKC---SAEFIKSTPKK----TWEELENEILKG 317 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCGGGGGSTTTHHHHHHHH--SSSSHHHH---HHHHHHHTTSS----CHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcchhhccccccceeEee--eCCccHHH---HHHHHhcCCCC----CHHHHHHhhcCC
Confidence 8889999999999999994 498776532 22111 11122111 111111 0001 112222111 1
Q ss_pred CcchH----HHHHHHHHHcCC--CcchHHHHHHHHHHhcchHHHHHHHHHhccC
Q 010702 265 MKGTG----KWTVQQAAELSV--AAPTIAASLDCRYLSGLKEEREKAAKVLKEA 312 (503)
Q Consensus 265 ~kgtG----~~~~~~A~~~gv--p~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~ 312 (503)
++-+| ..+++.|+++|+ |+|+.... .+.+...++.+..+..++..|
T Consensus 318 ~~~E~~~~~~~v~~~a~~~gv~~~~P~~~~v--~~~~~~~~~~~~~~~~l~~~~ 369 (375)
T 1yj8_A 318 QKLQGTVTLKYVYHMIKEKNMTNEFPLFTVL--HKISFENEDPSSLLKTFMNNK 369 (375)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCGGGCHHHHHH--HHHHHSCCCTTHHHHHHSSCC
T ss_pred cEeeHHHHHHHHHHHHHHhCCCCCCCHHHHH--HHHHhCCCCHHHHHHHHHcCc
Confidence 11111 256789999999 99998864 355666677777777765443
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=183.65 Aligned_cols=202 Identities=12% Similarity=0.047 Sum_probs=146.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeC--ChhHHHHHHHhhccc--C-C-CCeeeeC--CHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNR--TTSKVDETLDRAHRE--G-Q-LPLTGHY--TPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr--~~~~~~~l~~~~~~~--g-~-~~i~~~~--s~~e~~~~l~~~dvIil 78 (503)
|||+|||+|.||..+|.+|+++|++|++||| ++++.+.+.+.+... + . .++...+ +++++++. +|+||+
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~D~vi~ 77 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLEN---AEVVLL 77 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTT---CSEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhc---CCEEEE
Confidence 5899999999999999999999999999999 999988887654210 0 0 0124455 67776666 999999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCCC---h-hhHHHHHHHHHhc-CccEecccCCCChhhhh---cCC--cccC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW---Y-LNTERRIHEASQK-GLLYLGMGVSGGEEGAR---HGP--SLMP 148 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~---~-~~t~~~~~~l~~~-gi~~i~~pvsgg~~~a~---~G~--~i~~ 148 (503)
|||+. .+++++..+.+ +.++++||+++|+. + ...+.+.+.+.+. |..+ ..++..++..+. .|. .+++
T Consensus 78 ~v~~~-~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~-~~~~~~~p~~~~~~~~g~~~~~~~ 154 (335)
T 1txg_A 78 GVSTD-GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRE-RTVAITGPAIAREVAKRMPTTVVF 154 (335)
T ss_dssp CSCGG-GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGG-GEEEEESSCCHHHHHTTCCEEEEE
T ss_pred cCChH-HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCC-cEEEEECCCcHHHHHccCCcEEEE
Confidence 99996 78999999999 98999999998765 3 3444555555542 3211 222222222221 233 3444
Q ss_pred -CCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCc-----------------chhHHHHhH-----HHHHHHHHHHHHHHH
Q 010702 149 -GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEG-----------------GSGNFVKMV-----HNGIEYGDMQLISEA 205 (503)
Q Consensus 149 -gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~-----------------G~g~~vK~v-----~N~i~~~~~~~~~Ea 205 (503)
+.+++.++.++++|+..+ ..+.+.++. |+...+|+. +|.......+++.|+
T Consensus 155 ~~~~~~~~~~~~~ll~~~g------~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~ 228 (335)
T 1txg_A 155 SSPSESSANKMKEIFETEY------FGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEM 228 (335)
T ss_dssp ECSCHHHHHHHHHHHCBTT------EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHhCCCc------EEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 457888999999999888 556677664 333445777 888888889999999
Q ss_pred HHHHHHhCCCCHHHHH
Q 010702 206 YDVLKHVGGLSNAELA 221 (503)
Q Consensus 206 ~~l~~~~g~~~~~~i~ 221 (503)
..++++.| ++++++.
T Consensus 229 ~~la~~~G-~~~~~~~ 243 (335)
T 1txg_A 229 AELIEILG-GDRETAF 243 (335)
T ss_dssp HHHHHHHT-SCGGGGG
T ss_pred HHHHHHHC-CCcchhh
Confidence 99999999 9987653
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=175.38 Aligned_cols=229 Identities=14% Similarity=0.127 Sum_probs=160.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|||+|||+|.||..+|.+|+++| ++|++|||++++.+.+.+.. ++..+.++.+++ . +|+||+|+| +..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~------g~~~~~~~~~~~-~---~D~vi~~v~-~~~ 69 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL------GVETSATLPELH-S---DDVLILAVK-PQD 69 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT------CCEEESSCCCCC-T---TSEEEECSC-HHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhc------CCEEeCCHHHHh-c---CCEEEEEeC-chh
Confidence 58999999999999999999999 99999999999998887641 245666776665 5 999999999 467
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCC--CHHHHHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGG--SFEAYNNIRDIL 162 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg--~~~a~~~v~~ll 162 (503)
+++++.++.+ . +++|++++++... +.+.+.+.. +.+++.+ +.+.+.....|. .+++++ +++.++.++++|
T Consensus 70 ~~~v~~~l~~--~-~~ivv~~~~g~~~--~~l~~~~~~-~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~ 142 (263)
T 1yqg_A 70 MEAACKNIRT--N-GALVLSVAAGLSV--GTLSRYLGG-TRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIM 142 (263)
T ss_dssp HHHHHTTCCC--T-TCEEEECCTTCCH--HHHHHHTTS-CCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcc--C-CCEEEEecCCCCH--HHHHHHcCC-CCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHH
Confidence 8888876655 4 8999999665543 344444433 5678877 666676666676 677777 899999999999
Q ss_pred HHHhcccCCCCcEEEeC-C---------cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCc
Q 010702 163 QKVAAQVDDGPCVTYIG-E---------GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGEL 232 (503)
Q Consensus 163 ~~ig~~~~~~~~v~~~G-~---------~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~ 232 (503)
+.+| .++ +++ + .|.+. .+.+..+..+.|+ +++.| ++++++.+++.... .
T Consensus 143 ~~~g------~~~-~~~~~~~~~~~~al~g~~~-------~~~~~~~~~l~e~---~~~~G-~~~~~~~~~~~~~~---~ 201 (263)
T 1yqg_A 143 KSVG------LTV-WLDDEEKMHGITGISGSGP-------AYVFYLLDALQNA---AIRQG-FDMAEARALSLATF---K 201 (263)
T ss_dssp HTTE------EEE-ECSSTTHHHHHHHHTTSHH-------HHHHHHHHHHHHH---HHHTT-CCHHHHHHHHHHHH---H
T ss_pred HhCC------CEE-EeCChhhccHHHHHHccHH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHHHH---H
Confidence 9998 555 887 5 23322 2234455556666 67788 99998888874322 2
Q ss_pred chh-HHhhhh--h-hccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHH
Q 010702 233 ESF-LVEITA--D-IFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAA 288 (503)
Q Consensus 233 ~s~-l~~~~~--~-~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~ 288 (503)
.++ ++.... + .+.. ..++|++.+...+++ ..+.|++.|++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~-------------l~~~~~~~~~~~a 247 (263)
T 1yqg_A 202 GAVALAEQTGEDFEKLQK-NVTSKGGTTHEAVEA-------------FRRHRVAEAISEG 247 (263)
T ss_dssp HHHHHHHHHCCCHHHHHH-HTCCTTSHHHHHHHH-------------HHHTTHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHH-hcCCCChhHHHHHHH-------------HHHCCHHHHHHHH
Confidence 222 332221 2 2222 234566666655544 3668899888764
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-18 Score=170.57 Aligned_cols=170 Identities=15% Similarity=0.188 Sum_probs=137.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHH-HHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRD-FVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e-~~~~l~~~dvIil~vp~ 82 (503)
+++|||||+|.||.++|+.|+++|+ +|++|||++++++.+.+.+.. ...+.++++ +++. +|+||+|||.
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~-----~~~~~~~~~~~~~~---aDvVilavp~ 104 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----DEGTTSIAKVEDFS---PDFVMLSSPV 104 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----SEEESCTTGGGGGC---CSEEEECSCG
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCc-----chhcCCHHHHhhcc---CCEEEEeCCH
Confidence 4689999999999999999999999 999999999998887765431 145678887 7776 9999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCC----hhhhh----cCC-cccC---C
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGG----EEGAR----HGP-SLMP---G 149 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg----~~~a~----~G~-~i~~---g 149 (503)
. .+.+++.++.+.++++.+|+|++++.....+.+.+.+.. +|++ .|+.|. +..+. .|. .+++ +
T Consensus 105 ~-~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~---~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~ 180 (314)
T 3ggo_A 105 R-TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKK 180 (314)
T ss_dssp G-GHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTT
T ss_pred H-HHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC---CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCC
Confidence 5 688899999999999999999999887666666665543 6887 688884 33333 465 4444 4
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHH
Q 010702 150 GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG 193 (503)
Q Consensus 150 g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~ 193 (503)
+++++++.++++|+.+| ..++++++......+.++...
T Consensus 181 ~~~~~~~~v~~l~~~~G------~~v~~~~~~~hD~~~a~~s~l 218 (314)
T 3ggo_A 181 TDKKRLKLVKRVWEDVG------GVVEYMSPELHDYVFGVVSHL 218 (314)
T ss_dssp SCHHHHHHHHHHHHHTT------CEEEECCHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHcC------CEEEEcCHHHHHHHHHHHHHH
Confidence 68999999999999999 778999988878888777543
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9e-18 Score=166.52 Aligned_cols=193 Identities=13% Similarity=0.173 Sum_probs=142.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-------ccC-CC----------CeeeeCCHHHHH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REG-QL----------PLTGHYTPRDFV 67 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g-~~----------~i~~~~s~~e~~ 67 (503)
+++|+|||+|.||.++|..|+++|++|++||+++++++.+.+... ..+ .. ++..+.++++++
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~ 83 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAV 83 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHh
Confidence 368999999999999999999999999999999998877665300 000 00 246778888877
Q ss_pred hccCCCcEEEEecCCChhH-HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh----cCccEecccCCCChhhhhc
Q 010702 68 LSIQRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGVSGGEEGARH 142 (503)
Q Consensus 68 ~~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~pvsgg~~~a~~ 142 (503)
++ +|+||++||+..++ +.++.++.+.++++.+|++.+++.+. .++.+.+.. .|.||++. +..
T Consensus 84 ~~---aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~--~~la~~~~~~~~~ig~h~~~p--------~~~ 150 (283)
T 4e12_A 84 KD---ADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLP--SDLVGYTGRGDKFLALHFANH--------VWV 150 (283)
T ss_dssp TT---CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH--HHHHHHHSCGGGEEEEEECSS--------TTT
T ss_pred cc---CCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCCCcceEEEccCCC--------ccc
Confidence 76 99999999997544 55668888889999999987766643 344444432 24455432 123
Q ss_pred CC-cccC-C--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 010702 143 GP-SLMP-G--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (503)
Q Consensus 143 G~-~i~~-g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 218 (503)
++ ..++ + .++++++.++++++.+| +.+++++..+.|.. + |.+. ...++|++.++++.+ ++++
T Consensus 151 ~~lvevv~~~~t~~~~~~~~~~l~~~~g------~~~v~v~~~~~g~i---~-nr~~---~~~~~ea~~l~~~g~-~~~~ 216 (283)
T 4e12_A 151 NNTAEVMGTTKTDPEVYQQVVEFASAIG------MVPIELKKEKAGYV---L-NSLL---VPLLDAAAELLVDGI-ADPE 216 (283)
T ss_dssp SCEEEEEECTTSCHHHHHHHHHHHHHTT------CEEEECSSCCTTTT---H-HHHH---HHHHHHHHHHHHTTS-CCHH
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHcC------CEEEEEecCCCCEE---e-hHHH---HHHHHHHHHHHHhCC-CCHH
Confidence 34 3333 3 37899999999999999 88999977677763 3 4443 346799999999988 9999
Q ss_pred HHHHHHH
Q 010702 219 ELAEIFD 225 (503)
Q Consensus 219 ~i~~~~~ 225 (503)
++++++.
T Consensus 217 ~id~~~~ 223 (283)
T 4e12_A 217 TIDKTWR 223 (283)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999974
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=167.77 Aligned_cols=195 Identities=11% Similarity=0.118 Sum_probs=139.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChh--HHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTTS--KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~--~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
+|+|+|||+|.||..||.+|+++| ++|++|||+++ +.+.+.+.+ +....++.++++. +|+||+|
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G-------~~~~~~~~e~~~~---aDvVila 91 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMG-------VKLTPHNKETVQH---SDVLFLA 91 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHT-------CEEESCHHHHHHH---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcC-------CEEeCChHHHhcc---CCEEEEE
Confidence 468999999999999999999999 89999999986 777776543 5667788888887 9999999
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc--CccEecccCCCChhhhhcCCcccCCCC---HHH
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK--GLLYLGMGVSGGEEGARHGPSLMPGGS---FEA 154 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~--gi~~i~~pvsgg~~~a~~G~~i~~gg~---~~a 154 (503)
||+ ..+++++.++.+.+.++++||+++++.+. ..+.+.+.+. +.+++.+.. ..+.....|..++.+|+ ++.
T Consensus 92 v~~-~~~~~vl~~l~~~l~~~~ivvs~s~gi~~--~~l~~~l~~~~~~~~vv~~~p-~~p~~~~~g~~v~~~g~~~~~~~ 167 (322)
T 2izz_A 92 VKP-HIIPFILDEIGADIEDRHIVVSCAAGVTI--SSIEKKLSAFRPAPRVIRCMT-NTPVVVREGATVYATGTHAQVED 167 (322)
T ss_dssp SCG-GGHHHHHHHHGGGCCTTCEEEECCTTCCH--HHHHHHHHTTSSCCEEEEEEC-CGGGGGTCEEEEEEECTTCCHHH
T ss_pred eCH-HHHHHHHHHHHhhcCCCCEEEEeCCCCCH--HHHHHHHhhcCCCCeEEEEeC-CcHHHHcCCeEEEEeCCCCCHHH
Confidence 996 68999999999999899999999887653 3445555542 334554322 22222334445666665 789
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhH--HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010702 155 YNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMV--HNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (503)
Q Consensus 155 ~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v--~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 225 (503)
++.++++|+.+| .++ ++.+.....+..+. .+.+.+..+..++|+ +.+.| ++++++.+++.
T Consensus 168 ~~~v~~ll~~~G------~~~-~~~e~~~~~~~a~~g~gpa~~~~~~eala~a---~~~~G-l~~~~a~~l~~ 229 (322)
T 2izz_A 168 GRLMEQLLSSVG------FCT-EVEEDLIDAVTGLSGSGPAYAFTALDALADG---GVKMG-LPRRLAVRLGA 229 (322)
T ss_dssp HHHHHHHHHTTE------EEE-ECCGGGHHHHHHHTTTHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHhCC------CEE-EeCHHHHHHHHHHhcCHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 999999999999 444 44443323333332 234444455555555 46778 99998888874
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-17 Score=162.77 Aligned_cols=193 Identities=14% Similarity=0.143 Sum_probs=136.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGF----PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|+|||+|||+|.||..++.+|+++|+ +|++|||++++.+++.+.. ++..+.++.+++++ +|+||+||
T Consensus 1 M~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~------g~~~~~~~~e~~~~---aDvVilav 71 (247)
T 3gt0_A 1 MDKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY------GLTTTTDNNEVAKN---ADILILSI 71 (247)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH------CCEECSCHHHHHHH---CSEEEECS
T ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh------CCEEeCChHHHHHh---CCEEEEEe
Confidence 35799999999999999999999999 9999999999998887542 25678899999887 99999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe----cccCCCChhhhhcCC-cccC--CCCHH
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL----GMGVSGGEEGARHGP-SLMP--GGSFE 153 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i----~~pvsgg~~~a~~G~-~i~~--gg~~~ 153 (503)
|+ ..++++++++.+.+.++++||..+++... ..+.+.+.. +..++ +.|+.++ .|. .+++ +++++
T Consensus 72 ~~-~~~~~v~~~l~~~l~~~~~vvs~~~gi~~--~~l~~~~~~-~~~~v~~~p~~p~~~~-----~g~~~~~~~~~~~~~ 142 (247)
T 3gt0_A 72 KP-DLYASIINEIKEIIKNDAIIVTIAAGKSI--ESTENAFNK-KVKVVRVMPNTPALVG-----EGMSALCPNEMVTEK 142 (247)
T ss_dssp CT-TTHHHHC---CCSSCTTCEEEECSCCSCH--HHHHHHHCS-CCEEEEEECCGGGGGT-----CEEEEEEECTTCCHH
T ss_pred CH-HHHHHHHHHHHhhcCCCCEEEEecCCCCH--HHHHHHhCC-CCcEEEEeCChHHHHc-----CceEEEEeCCCCCHH
Confidence 87 47899999999999999999966555543 233444432 33333 2344433 344 4444 47999
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHHHH
Q 010702 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDV-LKHVGGLSNAELAEIFD 225 (503)
Q Consensus 154 a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l-~~~~g~~~~~~i~~~~~ 225 (503)
.+++++++|+.+| . ++++++.-.-.++-+. +---+.+..+.|++.. +.+.| +++++..+++.
T Consensus 143 ~~~~~~~l~~~~G------~-~~~~~e~~~d~~~a~~--g~gpa~~~~~~eal~~a~~~~G-l~~~~a~~~~~ 205 (247)
T 3gt0_A 143 DLEDVLNIFNSFG------Q-TEIVSEKLMDVVTSVS--GSSPAYVYMIIEAMADAAVLDG-MPRNQAYKFAA 205 (247)
T ss_dssp HHHHHHHHHGGGE------E-EEECCGGGHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHHhCC------C-EEEeCHHHccHHHHHh--ccHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 9999999999999 4 6667542211111122 1112344566677666 67888 99999999874
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9e-18 Score=171.49 Aligned_cols=277 Identities=12% Similarity=0.021 Sum_probs=175.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-------CcEEEEeCChh-----HHHHHHHhhccc----C---CCCeeeeCCHHHHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG-------FPISVYNRTTS-----KVDETLDRAHRE----G---QLPLTGHYTPRDFV 67 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~~~~~----g---~~~i~~~~s~~e~~ 67 (503)
|||+|||+|.||..+|..|+++| ++|++|||+++ +.+.+.+.+... + ..++..+.++++++
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAA 88 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHHH
Confidence 58999999999999999999999 99999999998 777776532110 0 00356677888887
Q ss_pred hccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCCh---hhHHHHHHHHHhc-CccEecccCCCChhhh---
Q 010702 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY---LNTERRIHEASQK-GLLYLGMGVSGGEEGA--- 140 (503)
Q Consensus 68 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~---~~t~~~~~~l~~~-gi~~i~~pvsgg~~~a--- 140 (503)
+. +|+||+|||+ ..++++++++.+.+.++++||+++++.. ...+.+.+.+.+. +. .+++..++..+
T Consensus 89 ~~---aD~Vilav~~-~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~---~~~v~~gp~~a~~v 161 (354)
T 1x0v_A 89 ED---ADILIFVVPH-QFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGI---PMSVLMGANIASEV 161 (354)
T ss_dssp TT---CSEEEECCCG-GGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTC---CEEEEECSCCHHHH
T ss_pred cC---CCEEEEeCCH-HHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCC---CEEEEECCCcHHHH
Confidence 76 9999999998 5899999999999999999999998653 2122233333222 31 22333333222
Q ss_pred hcCC---cccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHH-----------------HhHHHHHHHHHHH
Q 010702 141 RHGP---SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV-----------------KMVHNGIEYGDMQ 200 (503)
Q Consensus 141 ~~G~---~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~v-----------------K~v~N~i~~~~~~ 200 (503)
..|. ..+.+++++..++++++|+..+ ..+++.++.-...+. |+.+|........
T Consensus 162 ~~g~~~~~~~~~~~~~~~~~v~~ll~~~g------~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~ 235 (354)
T 1x0v_A 162 ADEKFCETTIGCKDPAQGQLLKELMQTPN------FRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRL 235 (354)
T ss_dssp HTTCCEEEEEECSSHHHHHHHHHHHCBTT------EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhcCCceEEEEECCHHHHHHHHHHhCCCC------EEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHH
Confidence 2342 3445678888999999999888 556666653222233 4557888888899
Q ss_pred HHHHHHHHHHHhCCC---CHHHHHH------HHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhc--CCcchH
Q 010702 201 LISEAYDVLKHVGGL---SNAELAE------IFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKT--GMKGTG 269 (503)
Q Consensus 201 ~~~Ea~~l~~~~g~~---~~~~i~~------~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~--~~kgtG 269 (503)
++.|+..++++.| + +++++.+ .+..-.. ..++. . .+.+.. +.+ .++.+.+++ +++-++
T Consensus 236 ~~~E~~~la~a~G-~~~~~~~~~~~~~g~~d~~~~~~~--~~~~~--~-~~~~~~-~~~----~~~~~~~~~~~g~~~E~ 304 (354)
T 1x0v_A 236 GLMEMIAFAKLFC-SGPVSSATFLESCGVADLITTCYG--GRNRK--V-AEAFAR-TGK----SIEQLEKELLNGQKLQG 304 (354)
T ss_dssp HHHHHHHHHHHHS-SSCCCGGGGGSTTTHHHHHHHHHH--CHHHH--H-HHHHHH-HCC----CHHHHHHHHSTTCCCHH
T ss_pred HHHHHHHHHHHhc-CCCCCcccccccchHHHHHHhhcc--cccHH--H-HHHHHh-cCC----CHHHHHHhhcCCcEeeh
Confidence 9999999999998 8 8766532 2211000 11111 1 111111 001 122222111 111111
Q ss_pred ----HHHHHHHHHcCC--CcchHHHHHHHHHHhcchHHHHHHHHHh
Q 010702 270 ----KWTVQQAAELSV--AAPTIAASLDCRYLSGLKEEREKAAKVL 309 (503)
Q Consensus 270 ----~~~~~~A~~~gv--p~p~~~~Av~~r~~s~~~~~r~~~~~~~ 309 (503)
..+++.|+++|+ |+|+.... . +.+...++.+..+..++
T Consensus 305 ~~~~g~v~~~a~~~gv~~~~P~~~~v-~-~~~~~~~~~~~~~~~l~ 348 (354)
T 1x0v_A 305 PETARELYSILQHKGLVDKFPLFMAV-Y-KVCYEGQPVGEFIHCLQ 348 (354)
T ss_dssp HHHHHHHHHHHHHHTCGGGSHHHHHH-H-HHHHSCCCGGGTHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHH-H-HHHhCCCCHHHHHHHHH
Confidence 167889999999 99998864 3 44545455555554443
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-17 Score=172.69 Aligned_cols=192 Identities=10% Similarity=0.090 Sum_probs=139.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHH--------HHHHhhcccC------CCCeeeeCCHHHHHhccC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVD--------ETLDRAHREG------QLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~--------~l~~~~~~~g------~~~i~~~~s~~e~~~~l~ 71 (503)
++||+|||+|.||.+||..|+++|++|++||+++++.. .+.+.+.... .-+++.+++++ .+++
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~-- 130 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSN-- 130 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTT--
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHcc--
Confidence 46899999999999999999999999999999998432 2222221000 00356777875 3444
Q ss_pred CCcEEEEecCCChhHH-HHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh----cCccEecccCCCChhhhhcCC--
Q 010702 72 RPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGVSGGEEGARHGP-- 144 (503)
Q Consensus 72 ~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~pvsgg~~~a~~G~-- 144 (503)
||+||+|||++..++ .++.++.+.++++.||++.+++.+. .++++.+.. .|.||++ |+. ..+
T Consensus 131 -aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i--~~ia~~~~~p~r~iG~Hffn-Pv~-------~m~Lv 199 (460)
T 3k6j_A 131 -CDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDL--NEISSVLRDPSNLVGIHFFN-PAN-------VIRLV 199 (460)
T ss_dssp -CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCH--HHHHTTSSSGGGEEEEECCS-STT-------TCCEE
T ss_pred -CCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhH--HHHHHhccCCcceEEEEecc-hhh-------hCCEE
Confidence 999999999987665 4568899999999999876666543 233333321 2667766 432 223
Q ss_pred cccCC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010702 145 SLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (503)
Q Consensus 145 ~i~~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 222 (503)
.+++| +++++++++.++++.+| +.++++++ +.|. +.|.+.. ..++|++.++++.| ++++++++
T Consensus 200 EIv~g~~Ts~e~~~~~~~l~~~lG------k~~v~v~d-~pGf----i~Nril~---~~~~EA~~l~~~~G-a~~e~ID~ 264 (460)
T 3k6j_A 200 EIIYGSHTSSQAIATAFQACESIK------KLPVLVGN-CKSF----VFNRLLH---VYFDQSQKLMYEYG-YLPHQIDK 264 (460)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHTT------CEEEEESS-CCHH----HHHHHHH---HHHHHHHHHHHTSC-CCHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhC------CEEEEEec-ccHH----HHHHHHH---HHHHHHHHHHHHcC-CCHHHHHH
Confidence 45566 48999999999999999 88999986 6664 3455543 35799999998888 99999999
Q ss_pred HHHH
Q 010702 223 IFDE 226 (503)
Q Consensus 223 ~~~~ 226 (503)
++..
T Consensus 265 a~~~ 268 (460)
T 3k6j_A 265 IITN 268 (460)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9854
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-17 Score=161.71 Aligned_cols=176 Identities=15% Similarity=0.170 Sum_probs=139.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh-ccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL-SIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~-~l~~~dvIil~vp~ 82 (503)
|++|+|||+|.||..+|..|+++|+ +|++|||++++.+.+.+.+.. .....+++++++ . +|+||+|||+
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~---aDvVilavp~ 72 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----DEGTTSIAKVEDFS---PDFVMLSSPV 72 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----SEEESCGGGGGGTC---CSEEEECSCH
T ss_pred CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCc-----ccccCCHHHHhcCC---CCEEEEcCCH
Confidence 3689999999999999999999999 999999999988877654421 124567777776 6 9999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCC----hhhhh----cCC-cccC---C
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGG----EEGAR----HGP-SLMP---G 149 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg----~~~a~----~G~-~i~~---g 149 (503)
. .+.+++.++.+.+.++.+|++++++.....+.+.+.+.+ + +++ .|+.|+ +..+. .|. +++. +
T Consensus 73 ~-~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~-~--~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~ 148 (281)
T 2g5c_A 73 R-TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK-R--FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKK 148 (281)
T ss_dssp H-HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-G--EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSS
T ss_pred H-HHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc-c--ceeeccccCCccCChhhhhhHHhCCCCEEEecCCC
Confidence 5 788899999898999999999999887666666666654 2 665 466653 33332 566 5555 7
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHH
Q 010702 150 GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDM 199 (503)
Q Consensus 150 g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~ 199 (503)
++++.++.++++|+.+| ..++++++...+.++|++.|...+...
T Consensus 149 ~~~~~~~~v~~l~~~~g------~~~~~~~~~~~d~~~~~~~~~~~~~a~ 192 (281)
T 2g5c_A 149 TDKKRLKLVKRVWEDVG------GVVEYMSPELHDYVFGVVSHLPHAVAF 192 (281)
T ss_dssp SCHHHHHHHHHHHHHTT------CEEEECCHHHHHHHHHHHTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC------CEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999 778889887778999999888765433
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-17 Score=174.85 Aligned_cols=189 Identities=16% Similarity=0.170 Sum_probs=140.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccCCC----------CeeeeCCHHHHHh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQL----------PLTGHYTPRDFVL 68 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~i~~~~s~~e~~~ 68 (503)
++||||||+|.||.+||.+|+++|++|++||+++++++.+.+.. ...|.+ +++.++++++ ++
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHA-LA 83 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGG-GG
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHH-hc
Confidence 35899999999999999999999999999999999988765420 001100 3566777754 45
Q ss_pred ccCCCcEEEEecCCChhHH-HHHHHHHhcCCCCCEEEe-cCCCChhhHHHHHHHHH----hcCccEec-ccCCCChhhhh
Q 010702 69 SIQRPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIID-GGNEWYLNTERRIHEAS----QKGLLYLG-MGVSGGEEGAR 141 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iIId-~st~~~~~t~~~~~~l~----~~gi~~i~-~pvsgg~~~a~ 141 (503)
+ +|+||+|||++..++ +++.++.+.++++.+|++ +|+..+. ++.+.+. -.|.||++ +|++
T Consensus 84 ~---aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~---~ia~~~~~p~~~ig~hf~~Pa~v~------- 150 (483)
T 3mog_A 84 A---ADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISIT---AIAAEIKNPERVAGLHFFNPAPVM------- 150 (483)
T ss_dssp G---CSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH---HHTTTSSSGGGEEEEEECSSTTTC-------
T ss_pred C---CCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHH---HHHHHccCccceEEeeecChhhhC-------
Confidence 5 999999999987664 667889999999999865 5555432 2333222 12667776 3443
Q ss_pred cCC-cccCCC---CHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 010702 142 HGP-SLMPGG---SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSN 217 (503)
Q Consensus 142 ~G~-~i~~gg---~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~ 217 (503)
+ ..+++| ++++++.+.++++.+| +.++++++. .| +++||.+.. .++|++.++++.+ .++
T Consensus 151 --~Lvevv~g~~Ts~e~~~~~~~l~~~lG------k~~v~v~d~-~G---fi~Nr~l~~----~~~Ea~~l~~~g~-~~~ 213 (483)
T 3mog_A 151 --KLVEVVSGLATAAEVVEQLCELTLSWG------KQPVRCHST-PG---FIVNRVARP----YYSEAWRALEEQV-AAP 213 (483)
T ss_dssp --CEEEEEECSSCCHHHHHHHHHHHHHTT------CEEEEEESC-TT---TTHHHHTHH----HHHHHHHHHHTTC-SCH
T ss_pred --CeEEEecCCCCCHHHHHHHHHHHHHhC------CEEEEEecc-Cc---chHHHHHHH----HHHHHHHHHHhCC-CCH
Confidence 3 445555 8999999999999999 889999863 34 556555433 6799999999988 999
Q ss_pred HHHHHHHH
Q 010702 218 AELAEIFD 225 (503)
Q Consensus 218 ~~i~~~~~ 225 (503)
+++++++.
T Consensus 214 ~~id~a~~ 221 (483)
T 3mog_A 214 EVIDAALR 221 (483)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999985
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6e-17 Score=162.02 Aligned_cols=192 Identities=12% Similarity=0.184 Sum_probs=137.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-----------hhcccC-----------CCCeeeeCCH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-----------RAHREG-----------QLPLTGHYTP 63 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~~~~~g-----------~~~i~~~~s~ 63 (503)
+++|+|||+|.||.+||..|+++|++|++|||++++++.+.+ .+.... ..+++.+.++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 94 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 94 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCH
Confidence 468999999999999999999999999999999998776432 110000 0035667888
Q ss_pred HHHHhccCCCcEEEEecCCChhH-HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHH----hcCccEecccCCCChh
Q 010702 64 RDFVLSIQRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS----QKGLLYLGMGVSGGEE 138 (503)
Q Consensus 64 ~e~~~~l~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~----~~gi~~i~~pvsgg~~ 138 (503)
++.+++ +|+||++||+..++ +.++.++.+.++++.+|++.+++.+.. ++.+.+. -.|.||++ |+.
T Consensus 95 ~~~~~~---aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~--~l~~~~~~~~~~~g~h~~~-P~~---- 164 (302)
T 1f0y_A 95 ASVVHS---TDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT--SIANATTRQDRFAGLHFFN-PVP---- 164 (302)
T ss_dssp HHHTTS---CSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH--HHHTTSSCGGGEEEEEECS-STT----
T ss_pred HHhhcC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH--HHHHhcCCcccEEEEecCC-Ccc----
Confidence 877766 99999999987655 456688888888899998766655432 3333222 12455554 221
Q ss_pred hhhcCC--cccCC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 010702 139 GARHGP--SLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (503)
Q Consensus 139 ~a~~G~--~i~~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~ 214 (503)
.++ .++.| +++++++.+.++++.+| +.++++++. .| ++++|.+ ..+++|++.++++.+
T Consensus 165 ---~~~~~~i~~g~~~~~e~~~~~~~l~~~~G------~~~v~~~~~-~g---~i~nr~l----~~~~~Ea~~l~~~g~- 226 (302)
T 1f0y_A 165 ---VMKLVEVIKTPMTSQKTFESLVDFSKALG------KHPVSCKDT-PG---FIVNRLL----VPYLMEAIRLYERGD- 226 (302)
T ss_dssp ---TCCEEEEECCTTCCHHHHHHHHHHHHHTT------CEEEEECSC-TT---TTHHHHH----HHHHHHHHHHHHTTS-
T ss_pred ---cCceEEEeCCCCCCHHHHHHHHHHHHHcC------CceEEecCc-cc---ccHHHHH----HHHHHHHHHHHHcCC-
Confidence 233 34444 38999999999999999 788888762 34 3444443 356899999999988
Q ss_pred CCHHHHHHHHH
Q 010702 215 LSNAELAEIFD 225 (503)
Q Consensus 215 ~~~~~i~~~~~ 225 (503)
++++++..++.
T Consensus 227 ~~~~~id~~~~ 237 (302)
T 1f0y_A 227 ASKEDIDTAMK 237 (302)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998874
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.1e-17 Score=163.31 Aligned_cols=172 Identities=13% Similarity=0.146 Sum_probs=134.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhc-cCCCcEEEEecCCC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLS-IQRPRSVIILVKAG 83 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~-l~~~dvIil~vp~~ 83 (503)
.+++|+|||+|.||.+||++|.++|++|++|||++++.+.+.+.+ +..+.+++++++. ++.+|+||+|||.
T Consensus 7 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G-------~~~~~~~~e~~~~a~~~aDlVilavP~- 78 (341)
T 3ktd_A 7 ISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEG-------FDVSADLEATLQRAAAEDALIVLAVPM- 78 (341)
T ss_dssp CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTT-------CCEESCHHHHHHHHHHTTCEEEECSCH-
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeeeCCHHHHHHhcccCCCEEEEeCCH-
Confidence 357899999999999999999999999999999999888776654 4456788887653 1237999999997
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCCh-hhhh-------cCC-cccCCC---
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGE-EGAR-------HGP-SLMPGG--- 150 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~-~~a~-------~G~-~i~~gg--- 150 (503)
..+.++++++.+. .++.+|+|++++.....+.+.+.+. +.+|++ .|++|++ .+.. .|. .+++.+
T Consensus 79 ~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~ 155 (341)
T 3ktd_A 79 TAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLF 155 (341)
T ss_dssp HHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGT
T ss_pred HHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCC
Confidence 5788999999886 7899999999998766665554432 578998 6999875 3433 233 445443
Q ss_pred CHH--------HHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHH
Q 010702 151 SFE--------AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG 193 (503)
Q Consensus 151 ~~~--------a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~ 193 (503)
+++ +++.++++|+.+| ..++++++......+.++...
T Consensus 156 ~~e~~~~~~~~~~~~v~~l~~~~G------a~v~~~~~~~HD~~~A~vshl 200 (341)
T 3ktd_A 156 DGTDINSTWISIWKDVVQMALAVG------AEVVPSRVGPHDAAAARVSHL 200 (341)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHTT------CEEEECCHHHHHHHHHHHTHH
T ss_pred ChhhhccchHHHHHHHHHHHHHcC------CEEEEeCHHHHHHHHHHHhHH
Confidence 556 8999999999999 678999887666666666543
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.2e-17 Score=151.95 Aligned_cols=176 Identities=14% Similarity=0.084 Sum_probs=136.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc---cCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR---EGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~---~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|||+||| +|.||..++..|+++|++|.++||++++.+++.+.... .+ .+. ..+++++++. +|+||+++|+
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~---~D~Vi~~~~~ 74 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDA--SIT-GMKNEDAAEA---CDIAVLTIPW 74 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSC--CEE-EEEHHHHHHH---CSEEEECSCH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccC--CCC-hhhHHHHHhc---CCEEEEeCCh
Confidence 5899999 99999999999999999999999999988777653110 00 134 4577787777 9999999997
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChh------------hHHHHHHHHHhcCccEecc--cCCCChhhh--hcCC-c
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYL------------NTERRIHEASQKGLLYLGM--GVSGGEEGA--RHGP-S 145 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~------------~t~~~~~~l~~~gi~~i~~--pvsgg~~~a--~~G~-~ 145 (503)
..+++++.++.+.+ ++++|+|++++... ..+++.+.+. +.+++.+ |+.+..... ..|. .
T Consensus 75 -~~~~~~~~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~ 150 (212)
T 1jay_A 75 -EHAIDTARDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE--SEKVVSALHTIPAARFANLDEKFDWD 150 (212)
T ss_dssp -HHHHHHHHHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT--CSCEEECCTTCCHHHHHCTTCCCCEE
T ss_pred -hhHHHHHHHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC--CCeEEEEccchHHHHhhCcCCCCCcc
Confidence 46788888887777 58999999986542 2456665554 4678876 665554433 4455 6
Q ss_pred ccCCCC-HHHHHHHHHHHHHH-hcccCCCCcEEEeCCcchhHHHHhHHHHHHHHH
Q 010702 146 LMPGGS-FEAYNNIRDILQKV-AAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGD 198 (503)
Q Consensus 146 i~~gg~-~~a~~~v~~ll~~i-g~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~ 198 (503)
++++|+ +++++.++++|+.+ | .+++++++.+.++.+|++.|.+.+..
T Consensus 151 ~~~~g~~~~~~~~v~~l~~~~~G------~~~~~~~~~~~a~~~k~~~~~~~~~~ 199 (212)
T 1jay_A 151 VPVCGDDDESKKVVMSLISEIDG------LRPLDAGPLSNSRLVESLTPLILNIM 199 (212)
T ss_dssp EEEEESCHHHHHHHHHHHHHSTT------EEEEEEESGGGHHHHHTHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHHcCC------CCceeccchhHHHHhcchHHHHHHHH
Confidence 677775 89999999999999 9 67899999999999999999876544
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=163.31 Aligned_cols=270 Identities=16% Similarity=0.120 Sum_probs=160.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc--C-CC----Ce-eeeCCHHHHHhccCCCcEEE
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE--G-QL----PL-TGHYTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~--g-~~----~i-~~~~s~~e~~~~l~~~dvIi 77 (503)
+|||+|||+|.||..+|..|+++|++|++|||++++.+.+.+.+... + .. ++ ....++++++.. +|+||
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi 80 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD---ADVIL 80 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT---CSEEE
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhc---CCEEE
Confidence 36899999999999999999999999999999999988887653100 0 00 11 356788887766 99999
Q ss_pred EecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcC---ccEec---ccCCCChhhh---h----cCC
Q 010702 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG---LLYLG---MGVSGGEEGA---R----HGP 144 (503)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~g---i~~i~---~pvsgg~~~a---~----~G~ 144 (503)
+|+|.. ..+++++.+.+.+.++++||++.+... .+.++.+.+.+.+ +.|++ +|+++...+. . .+.
T Consensus 81 ~~v~~~-~~~~~~~~l~~~l~~~~~vv~~~~~~~-~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~~ 158 (359)
T 1bg6_A 81 IVVPAI-HHASIAANIASYISEGQLIILNPGATG-GALEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGA 158 (359)
T ss_dssp ECSCGG-GHHHHHHHHGGGCCTTCEEEESSCCSS-HHHHHHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEECSC
T ss_pred EeCCch-HHHHHHHHHHHhCCCCCEEEEcCCCch-HHHHHHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEeecc
Confidence 999996 678899999999999999999855233 3344555565544 44654 4554432211 1 011
Q ss_pred -cc--cC-CCCHHHHHHHHHHHHHHhcccCCC------C---cEEEeCCc--chhHHHH---hH------HHHHHHHHHH
Q 010702 145 -SL--MP-GGSFEAYNNIRDILQKVAAQVDDG------P---CVTYIGEG--GSGNFVK---MV------HNGIEYGDMQ 200 (503)
Q Consensus 145 -~i--~~-gg~~~a~~~v~~ll~~ig~~~~~~------~---~v~~~G~~--G~g~~vK---~v------~N~i~~~~~~ 200 (503)
.+ .. +++++.++.++++|..+. ...+ + ++++.+.. +.+...| +. .+.......+
T Consensus 159 ~~~g~~~~~~~~~~~~~l~~~~~~~~--~~~di~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 1bg6_A 159 MDFACLPAAKAGWALEQIGSVLPQYV--AVENVLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSLAEK 236 (359)
T ss_dssp EEEEEESGGGHHHHHHHHTTTCTTEE--ECSCHHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHHHHHHHH
T ss_pred eEEEeccccccHHHHHHHHHHhhhcE--EcCChHhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHHHHHHHH
Confidence 11 01 345556777777765432 0000 0 01111110 3333322 11 2334566788
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhh--hhhhccccccCCCchhHH--HHHhhcCCcchHHHHHHHH
Q 010702 201 LISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEI--TADIFKVKDEYGEGELVD--KILDKTGMKGTGKWTVQQA 276 (503)
Q Consensus 201 ~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~--~~~~l~~~~~~~~~~~ld--~i~~~~~~kgtG~~~~~~A 276 (503)
++.|++.++++.| ++++++.+.+.........+ +.+. +..+++ |...| ..++ .+.+|+. -+.| ..++.|
T Consensus 237 ~~~E~~~va~a~G-~~~~~~~~~~~~~~~~~~~~-l~~~~~~~sm~~--d~~~~-~e~~~~~~~~D~~-~~~g-~~~~~a 309 (359)
T 1bg6_A 237 VDAERIAIAKAFD-LNVPSVCEWYKESYGQSPAT-IYEAVQGNPAYR--GIAGP-INLNTRYFFEDVS-TGLV-PLSELG 309 (359)
T ss_dssp HHHHHHHHHHTTT-CCCCCHHHHC-------CCS-HHHHHHTCGGGT--TCBCC-SSSCCHHHHHHHH-TTHH-HHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCcHHHHHHHHhCCCccc-HHHHHhcchhhc--CCCCC-CCCCccceecCcC-ccHH-HHHHHH
Confidence 9999999999998 98876666653221111111 0001 112221 21111 2334 5555541 0123 688999
Q ss_pred HHcCCCcchHHHH
Q 010702 277 AELSVAAPTIAAS 289 (503)
Q Consensus 277 ~~~gvp~p~~~~A 289 (503)
+++|+|+|+....
T Consensus 310 ~~~gv~~P~~~~l 322 (359)
T 1bg6_A 310 RAVNVPTPLIDAV 322 (359)
T ss_dssp HHTTCCCHHHHHH
T ss_pred HHcCCCchHHHHH
Confidence 9999999998864
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=155.97 Aligned_cols=184 Identities=15% Similarity=0.102 Sum_probs=132.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG----FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
+|+|+|||+|.||..+|.+|+++| ++|++|||++++ . ++....++.++++. +|+||+|||
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~-------g~~~~~~~~~~~~~---~D~vi~~v~ 67 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------T-------TLNYMSSNEELARH---CDIIVCAVK 67 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------S-------SSEECSCHHHHHHH---CSEEEECSC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------C-------ceEEeCCHHHHHhc---CCEEEEEeC
Confidence 469999999999999999999999 799999999876 1 24667788888887 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh--cCccEe-cccCCCChhhhhcCCcccCCC---CHHHH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--KGLLYL-GMGVSGGEEGARHGPSLMPGG---SFEAY 155 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~gi~~i-~~pvsgg~~~a~~G~~i~~gg---~~~a~ 155 (503)
+ ..+++++.++.+.++++.+|.++++..+. .+.+.+.. +.++++ +.|+.++ .|.+++.++ +++.+
T Consensus 68 ~-~~~~~v~~~l~~~l~~~~vv~~~~gi~~~---~l~~~~~~~~~~v~~~p~~p~~~~-----~g~~~~~~~~~~~~~~~ 138 (262)
T 2rcy_A 68 P-DIAGSVLNNIKPYLSSKLLISICGGLNIG---KLEEMVGSENKIVWVMPNTPCLVG-----EGSFIYCSNKNVNSTDK 138 (262)
T ss_dssp T-TTHHHHHHHSGGGCTTCEEEECCSSCCHH---HHHHHHCTTSEEEEEECCGGGGGT-----CEEEEEEECTTCCHHHH
T ss_pred H-HHHHHHHHHHHHhcCCCEEEEECCCCCHH---HHHHHhCCCCcEEEECCChHHHHc-----CCeEEEEeCCCCCHHHH
Confidence 7 58999999998888433344555555443 33333433 123444 2343332 345444433 78999
Q ss_pred HHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhH--HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010702 156 NNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMV--HNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFD 225 (503)
Q Consensus 156 ~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v--~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 225 (503)
+.++++|+.+| . ++++++......+++. .|.+.+..+..+.|+ +.+.| +++++..+++.
T Consensus 139 ~~~~~ll~~~G------~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~al~~~---~~~~G-l~~~~~~~~~~ 199 (262)
T 2rcy_A 139 KYVNDIFNSCG------I-IHEIKEKDMDIATAISGCGPAYVYLFIESLIDA---GVKNG-LSRELSKNLVL 199 (262)
T ss_dssp HHHHHHHHTSE------E-EEECCGGGHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHH
T ss_pred HHHHHHHHhCC------C-EEEeCHHHccHHHHHHccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 99999999999 5 8888876555555553 366666666666665 56788 99988887764
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-16 Score=155.46 Aligned_cols=199 Identities=15% Similarity=0.198 Sum_probs=141.7
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-----------hhcccCCC-------CeeeeCC
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD-----------RAHREGQL-------PLTGHYT 62 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~~~~~g~~-------~i~~~~s 62 (503)
|+.....||+|||+|.||.++|..++.+|++|.+||++++.++...+ .+...+.. ++..+++
T Consensus 1 Ma~p~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~ 80 (319)
T 3ado_A 1 MASPAAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTN 80 (319)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECC
T ss_pred CCCCCCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccc
Confidence 56555678999999999999999999999999999999987554332 11100000 4667788
Q ss_pred HHHHHhccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh--c--CccEeccc-CCCC
Q 010702 63 PRDFVLSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--K--GLLYLGMG-VSGG 136 (503)
Q Consensus 63 ~~e~~~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~--gi~~i~~p-vsgg 136 (503)
+++++++ +|+||.+||+...++.-+ .+|.+.++++.||...|++.+.+ ++++.+.. + |.||+..| ++.-
T Consensus 81 l~~a~~~---ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is--~ia~~~~~p~r~ig~HffNP~~~m~L 155 (319)
T 3ado_A 81 LAEAVEG---VVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPS--KLFTGLAHVKQCIVAHPVNPPYYIPL 155 (319)
T ss_dssp HHHHTTT---EEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHH--HHHTTCTTGGGEEEEEECSSTTTCCE
T ss_pred hHhHhcc---CcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccch--hhhhhccCCCcEEEecCCCCccccch
Confidence 8887776 999999999998887554 78888888888877666665433 33333322 2 67887754 3322
Q ss_pred hhhhhcCCcccCC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 010702 137 EEGARHGPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGG 214 (503)
Q Consensus 137 ~~~a~~G~~i~~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~ 214 (503)
.+ ++.| .++++++++..+++.+| +.++.+-.+..|+.+ |.+. ..++.|++.++++.+
T Consensus 156 VE-------iv~g~~Ts~~~~~~~~~~~~~~g------k~pv~v~kd~pGFi~----NRl~---~~~~~EA~~lv~eGv- 214 (319)
T 3ado_A 156 VE-------LVPHPETSPATVDRTHALMRKIG------QSPVRVLKEIDGFVL----NRLQ---YAIISEAWRLVEEGI- 214 (319)
T ss_dssp EE-------EEECTTCCHHHHHHHHHHHHHTT------CEEEECSSCCTTTTH----HHHH---HHHHHHHHHHHHTTS-
T ss_pred HH-------hcCCCCCcHHHHHHHHHHHHHhC------CccCCcCCCCCCEeH----HHHH---HHHHHHHHHHHHhCC-
Confidence 22 2333 58999999999999999 777766555666654 5554 455599999999988
Q ss_pred CCHHHHHHHHH
Q 010702 215 LSNAELAEIFD 225 (503)
Q Consensus 215 ~~~~~i~~~~~ 225 (503)
.++++++.++.
T Consensus 215 as~edID~~~~ 225 (319)
T 3ado_A 215 VSPSDLDLVMS 225 (319)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999999873
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.6e-15 Score=145.67 Aligned_cols=243 Identities=16% Similarity=0.124 Sum_probs=159.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC---cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
+|||||||+|.||.+|+..|+++|+ +|++|||++++.+++.+.. ++..+.+..+++++ +|+||++||+
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~------gi~~~~~~~~~~~~---aDvVilav~p 73 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC------GVHTTQDNRQGALN---ADVVVLAVKP 73 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT------CCEEESCHHHHHSS---CSEEEECSCG
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc------CCEEeCChHHHHhc---CCeEEEEeCH
Confidence 3689999999999999999999999 9999999999998887642 35677888888887 9999999987
Q ss_pred ChhHHHHHHHHHhc-CCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCChhhhhcCCc-ccCC--CCHHHHHH
Q 010702 83 GSPVDQTIAALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGPS-LMPG--GSFEAYNN 157 (503)
Q Consensus 83 ~~~v~~vl~~l~~~-l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~~~a~~G~~-i~~g--g~~~a~~~ 157 (503)
..++++++++.+. ++++++||..+++... ..+.+.+.. +..++.+ |- .+.....|.+ +.++ .+++.++.
T Consensus 74 -~~~~~vl~~l~~~~l~~~~iiiS~~agi~~--~~l~~~l~~-~~~vvr~mPn--~p~~v~~g~~~l~~~~~~~~~~~~~ 147 (280)
T 3tri_A 74 -HQIKMVCEELKDILSETKILVISLAVGVTT--PLIEKWLGK-ASRIVRAMPN--TPSSVRAGATGLFANETVDKDQKNL 147 (280)
T ss_dssp -GGHHHHHHHHHHHHHTTTCEEEECCTTCCH--HHHHHHHTC-CSSEEEEECC--GGGGGTCEEEEEECCTTSCHHHHHH
T ss_pred -HHHHHHHHHHHhhccCCCeEEEEecCCCCH--HHHHHHcCC-CCeEEEEecC--ChHHhcCccEEEEeCCCCCHHHHHH
Confidence 5899999999998 8888899987776643 344444432 3344432 32 1222223333 3333 47899999
Q ss_pred HHHHHHHHhcccCCCCcEEEeCCcc---hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcch
Q 010702 158 IRDILQKVAAQVDDGPCVTYIGEGG---SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELES 234 (503)
Q Consensus 158 v~~ll~~ig~~~~~~~~v~~~G~~G---~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s 234 (503)
++++|+.+| + +.++.++. ....+.-.-+.+.+..+..+.|+ +.+.| +++++..++..+.-.|.
T Consensus 148 v~~l~~~iG------~-~~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a---~v~~G-l~~~~a~~l~~~t~~G~--- 213 (280)
T 3tri_A 148 AESIMRAVG------L-VIWVSSEDQIEKIAALSGSGPAYIFLIMEALQEA---AEQLG-LTKETAELLTEQTVLGA--- 213 (280)
T ss_dssp HHHHHGGGE------E-EEECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHCC------C-eEEECCHHHhhHHHHHhccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHHHHHHH---
Confidence 999999999 4 55664421 11111111234445566666666 45788 99999988874322221
Q ss_pred hHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHH
Q 010702 235 FLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIA 287 (503)
Q Consensus 235 ~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~ 287 (503)
...+...+ ..|.-+.|. .....||-...+..-++.|++..++.
T Consensus 214 ------a~~~~~~~-~~p~~l~~~---v~spgGtT~~~l~~le~~g~~~~~~~ 256 (280)
T 3tri_A 214 ------ARMALETE-QSVVQLRQF---VTSPGGTTEQAIKVLESGNLRELFIK 256 (280)
T ss_dssp ------HHHHHTCS-SCHHHHHHH---HCCTTSHHHHHHHHHHTTCHHHHHHH
T ss_pred ------HHHHHhcC-CCHHHHHHh---ccCCChHHHHHHHHHHHCChHHHHHH
Confidence 12222211 223222222 23345666566666677788755544
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.4e-16 Score=151.62 Aligned_cols=173 Identities=15% Similarity=0.172 Sum_probs=133.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|+|+|||+|.||..+|..|.++|++|++|||++++.+.+.+.+.. .....+++++ .. +|+||+++|+ ..+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~-~~---~D~vi~av~~-~~~ 70 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLV-----DEAGQDLSLL-QT---AKIIFLCTPI-QLI 70 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSC-----SEEESCGGGG-TT---CSEEEECSCH-HHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCC-----ccccCCHHHh-CC---CCEEEEECCH-HHH
Confidence 589999999999999999999999999999999998887654321 1346677777 65 9999999998 478
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCCh----hhhh----cCC-cccC---CCCHH
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGE----EGAR----HGP-SLMP---GGSFE 153 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~----~~a~----~G~-~i~~---gg~~~ 153 (503)
.++++++.+.+.++.+|+++++......+.+.+.+ .++++. |++|+. ..+. .|. +++. +++++
T Consensus 71 ~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~----~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~ 146 (279)
T 2f1k_A 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLW----SGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPE 146 (279)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHS----TTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHH
T ss_pred HHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHHHh----CCEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHH
Confidence 89999999999999999999887765544443322 256665 777542 2222 343 3332 46899
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHH
Q 010702 154 AYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDM 199 (503)
Q Consensus 154 a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~ 199 (503)
..+.++++|+.+| ..++++++.....++|++.|.-.+...
T Consensus 147 ~~~~v~~l~~~~g------~~~~~~~~~~~~~~~~~~~~~p~~i~~ 186 (279)
T 2f1k_A 147 QLACLRSVLEPLG------VKIYLCTPADHDQAVAWISHLPVMVSA 186 (279)
T ss_dssp HHHHHHHHHGGGT------CEEEECCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHcC------CEEEEcCHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999 678899888888999999887544433
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-16 Score=155.10 Aligned_cols=160 Identities=20% Similarity=0.231 Sum_probs=124.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+|+|+|||+|.||..+|..|+++ |++|.+|||++++.+.+.+.+.. ...+.+++++++. +|+||+|||+.
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~---aDvVilavp~~ 77 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIV-----DEATADFKVFAAL---ADVIILAVPIK 77 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSC-----SEEESCTTTTGGG---CSEEEECSCHH
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCc-----ccccCCHHHhhcC---CCEEEEcCCHH
Confidence 47899999999999999999988 68999999999998887664321 1356677777776 99999999985
Q ss_pred hhHHHHHHHHHhc-CCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCC----Chhhhh----cCC-cc---cCC
Q 010702 84 SPVDQTIAALSEH-MSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSG----GEEGAR----HGP-SL---MPG 149 (503)
Q Consensus 84 ~~v~~vl~~l~~~-l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsg----g~~~a~----~G~-~i---~~g 149 (503)
.+++++.++.+. +.++.+|+|++++....++.+.+.+.+++++|++ .|++| |+..+. .|. .+ ..+
T Consensus 78 -~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~ 156 (290)
T 3b1f_A 78 -KTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCL 156 (290)
T ss_dssp -HHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTT
T ss_pred -HHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCC
Confidence 678999999998 9999999999998776666666666554788887 57766 333332 454 22 236
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCCcEEEeCC
Q 010702 150 GSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180 (503)
Q Consensus 150 g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~ 180 (503)
++++.++.++++|+.+| .+++++++
T Consensus 157 ~~~~~~~~v~~l~~~~G------~~~~~~~~ 181 (290)
T 3b1f_A 157 TKPNTIPALQDLLSGLH------ARYVEIDA 181 (290)
T ss_dssp CCTTHHHHHHHHTGGGC------CEEEECCH
T ss_pred CCHHHHHHHHHHHHHcC------CEEEEcCH
Confidence 78899999999999999 67777765
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.2e-16 Score=170.58 Aligned_cols=190 Identities=14% Similarity=0.224 Sum_probs=137.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-------hcccCCC----------CeeeeCCHHHHHh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQL----------PLTGHYTPRDFVL 68 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~~----------~i~~~~s~~e~~~ 68 (503)
.++|||||+|.||.+||.+|+++||+|++||+++++++..... ....|.+ +++.+.++ +.++
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~ 392 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG 392 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence 4689999999999999999999999999999999987763210 0001100 25566777 4555
Q ss_pred ccCCCcEEEEecCCChhHHH-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh----cCccEecccCCCChhhhhcC
Q 010702 69 SIQRPRSVIILVKAGSPVDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGVSGGEEGARHG 143 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~pvsgg~~~a~~G 143 (503)
+ +|+||++||++..++. ++.++.+.++++.||++.+++.+.. ++.+.+.. .|.||++ |+. .+
T Consensus 393 ~---aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~--~la~~~~~~~~~ig~hf~~-P~~-------~~ 459 (715)
T 1wdk_A 393 N---VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS--LLAKALKRPENFVGMHFFN-PVH-------MM 459 (715)
T ss_dssp G---CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH--HHGGGCSCGGGEEEEECCS-STT-------TC
T ss_pred C---CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHH--HHHHHhcCccceEEEEccC-Ccc-------cC
Confidence 5 9999999999876654 5588888899999998766665433 23332321 2566665 332 22
Q ss_pred C--cccCCC--CHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010702 144 P--SLMPGG--SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (503)
Q Consensus 144 ~--~i~~gg--~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 219 (503)
+ .++.|. ++++++.+.++++.+| +.++++++. .|. +.|.+.. ..++|++.++++ | +++++
T Consensus 460 ~lvevv~g~~t~~e~~~~~~~l~~~lG------k~~v~v~d~-~Gf----i~Nril~---~~~~Ea~~l~~~-G-~~~~~ 523 (715)
T 1wdk_A 460 PLVEVIRGEKSSDLAVATTVAYAKKMG------KNPIVVNDC-PGF----LVNRVLF---PYFGGFAKLVSA-G-VDFVR 523 (715)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHTT------CEEEEEESC-TTT----THHHHHH---HHHHHHHHHHHT-T-CCHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHhC------CEeEEEcCC-CCh----hhhHHHH---HHHHHHHHHHHC-C-CCHHH
Confidence 3 345554 8999999999999999 889999873 454 3455443 467999999997 7 99999
Q ss_pred HHHHHH
Q 010702 220 LAEIFD 225 (503)
Q Consensus 220 i~~~~~ 225 (503)
+++++.
T Consensus 524 id~~~~ 529 (715)
T 1wdk_A 524 IDKVME 529 (715)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999873
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.2e-16 Score=171.17 Aligned_cols=190 Identities=15% Similarity=0.189 Sum_probs=138.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-------hcccCC----------CCeeeeCCHHHHHh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-------AHREGQ----------LPLTGHYTPRDFVL 68 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~----------~~i~~~~s~~e~~~ 68 (503)
+++|+|||+|.||.+||.+|+++||+|++||+++++++...+. ....|. -+++.+.+++ .++
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~-~~~ 390 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYE-SFR 390 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSG-GGT
T ss_pred CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHH-HHC
Confidence 4689999999999999999999999999999999987764321 000100 0356677774 444
Q ss_pred ccCCCcEEEEecCCChhHH-HHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh----cCccEecccCCCChhhhhcC
Q 010702 69 SIQRPRSVIILVKAGSPVD-QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGVSGGEEGARHG 143 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~-~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~pvsgg~~~a~~G 143 (503)
+ +|+||++||++..++ .++.++.+.++++.+|++.+++.+.. ++.+.+.. .|.||++ |+.. +
T Consensus 391 ~---aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~--~la~~~~~p~~~iG~hf~~-P~~~-------~ 457 (725)
T 2wtb_A 391 D---VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLN--KIGERTKSQDRIVGAHFFS-PAHI-------M 457 (725)
T ss_dssp T---CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH--HHTTTCSCTTTEEEEEECS-STTT-------C
T ss_pred C---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--HHHHHhcCCCCEEEecCCC-Cccc-------C
Confidence 4 999999999987665 45588888899999998766665433 23332221 3667776 4332 2
Q ss_pred C--cccCC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 010702 144 P--SLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAE 219 (503)
Q Consensus 144 ~--~i~~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 219 (503)
+ .++.| +++++++.+.++++.+| +.++++++. .|. +.|.+.. ..++|++.++++ | +++++
T Consensus 458 ~lvevv~g~~t~~e~~~~~~~l~~~lG------k~~v~v~d~-~Gf----i~Nril~---~~~~Ea~~l~~~-G-~~~e~ 521 (725)
T 2wtb_A 458 PLLEIVRTNHTSAQVIVDLLDVGKKIK------KTPVVVGNC-TGF----AVNRMFF---PYTQAAMFLVEC-G-ADPYL 521 (725)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHTT------CEEEEEESS-TTT----THHHHHH---HHHHHHHHHHHT-T-CCHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHhC------CEEEEECCC-ccH----HHHHHHH---HHHHHHHHHHHC-C-CCHHH
Confidence 3 34555 38999999999999999 889999873 454 3455544 457999999998 7 99999
Q ss_pred HHHHHH
Q 010702 220 LAEIFD 225 (503)
Q Consensus 220 i~~~~~ 225 (503)
+++++.
T Consensus 522 id~~~~ 527 (725)
T 2wtb_A 522 IDRAIS 527 (725)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999974
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.3e-18 Score=159.23 Aligned_cols=158 Identities=17% Similarity=0.213 Sum_probs=116.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.|+|+|||+|.||..+|.+|.+.|++|.+|||+++ .+.+...+ +... ++.++++. +|+||++||+. .
T Consensus 19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g-------~~~~-~~~~~~~~---aDvVilav~~~-~ 85 (201)
T 2yjz_A 19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRG-------AEVL-CYSEAASR---SDVIVLAVHRE-H 85 (201)
Confidence 46899999999999999999999999999999987 44444322 3333 66677666 99999999985 6
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC--------------hhhhhcCC--cccCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG--------------EEGARHGP--SLMPG 149 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg--------------~~~a~~G~--~i~~g 149 (503)
++.++ ++.+ +.++++|||++++.+... +...+..+++.++.++ ..+...|. .+++|
T Consensus 86 ~~~v~-~l~~-~~~~~ivI~~~~G~~~~~------~~~~~~~~l~~~~~~~~vvra~~n~~a~~~~~g~l~g~~~~~~~g 157 (201)
T 2yjz_A 86 YDFLA-ELAD-SLKGRVLIDVSNNQKMNQ------YPESNAEYLAQLVPGAHVVKAFNTISAWALQSGTLDASRQVFVCG 157 (201)
Confidence 77777 4544 347899999999986322 1112223333333222 11222222 67888
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhH
Q 010702 150 GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMV 190 (503)
Q Consensus 150 g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v 190 (503)
++++.++.++++|+.+| ..++++|+.|.|.++|.+
T Consensus 158 ~~~~~~~~v~~ll~~~G------~~~~~~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 158 NDSKAKDRVMDIARTLG------LTPLDQGSLVAAKEIENY 192 (201)
Confidence 89999999999999999 789999999999998875
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-16 Score=151.70 Aligned_cols=163 Identities=15% Similarity=0.226 Sum_probs=118.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEE-EeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
||||+|||+|.||..+|..|+++|++|.+ |||++++.+++.+... +....+..+.++. +|+||+++|. .
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g------~~~~~~~~~~~~~---aDvVilavp~-~ 92 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFG------ASVKAVELKDALQ---ADVVILAVPY-D 92 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHT------TTEEECCHHHHTT---SSEEEEESCG-G
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhC------CCcccChHHHHhc---CCEEEEeCCh-H
Confidence 57999999999999999999999999999 9999999888776421 2233344555565 9999999997 5
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCCh------------hhHHHHHHHHHhc----CccEecccCCC-ChhhhhcCC--c
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWY------------LNTERRIHEASQK----GLLYLGMGVSG-GEEGARHGP--S 145 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~------------~~t~~~~~~l~~~----gi~~i~~pvsg-g~~~a~~G~--~ 145 (503)
.+.+++.++.+ + ++++||++++..+ ...+.+.+.+... +..++.+++.. ++. ...++ .
T Consensus 93 ~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~~~v~~~g~~-~~~~~~~v 169 (220)
T 4huj_A 93 SIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKVVKAFNTLPAAVLAADPD-KGTGSRVL 169 (220)
T ss_dssp GHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEEEEESCSSCHHHHTSCSB-CSSCEEEE
T ss_pred HHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCEEECCCCCCHHHhhhCcc-cCCCCeeE
Confidence 78888888776 5 6899999998763 1445555555421 12223333333 222 22233 4
Q ss_pred ccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHH
Q 010702 146 LMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFV 187 (503)
Q Consensus 146 i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~v 187 (503)
++.|.++++.+.++++|+.+| ..++++|+.+.|..+
T Consensus 170 ~~~g~~~~~~~~v~~l~~~~G------~~~~~~G~l~~a~~~ 205 (220)
T 4huj_A 170 FLSGNHSDANRQVAELISSLG------FAPVDLGTLAASGPI 205 (220)
T ss_dssp EEEESCHHHHHHHHHHHHHTT------CEEEECCSHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHhC------CCeEeeCChhhcchh
Confidence 556778999999999999999 899999997777553
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-15 Score=158.23 Aligned_cols=190 Identities=16% Similarity=0.247 Sum_probs=135.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-----------hcccC----CCCeeeeCCHHHHHhcc
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-----------AHREG----QLPLTGHYTPRDFVLSI 70 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------~~~~g----~~~i~~~~s~~e~~~~l 70 (503)
+++|+|||+|.||.+||..|+++|++|++||+++++++...+. +.... ......+.+++ .+++
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~- 114 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELST- 114 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGG-GGTT-
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHH-HHCC-
Confidence 4689999999999999999999999999999999887765431 10000 00123456663 3444
Q ss_pred CCCcEEEEecCCChhH-HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh----cCccEecccCCCChhhhhcCC-
Q 010702 71 QRPRSVIILVKAGSPV-DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ----KGLLYLGMGVSGGEEGARHGP- 144 (503)
Q Consensus 71 ~~~dvIil~vp~~~~v-~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~----~gi~~i~~pvsgg~~~a~~G~- 144 (503)
+|+||+|||+...+ +.++.++.+.++++.+|++ +|+.+..+ ++.+.+.. .|.||+ .|+.. ++
T Consensus 115 --aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~s-nTs~~~~~-~la~~~~~~~~~ig~hf~-~P~~~-------~~l 182 (463)
T 1zcj_A 115 --VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCT-NTSALNVD-DIASSTDRPQLVIGTHFF-SPAHV-------MRL 182 (463)
T ss_dssp --CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE-CCSSSCHH-HHHTTSSCGGGEEEEEEC-SSTTT-------CCE
T ss_pred --CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEe-CCCCcCHH-HHHHHhcCCcceEEeecC-CCccc-------cee
Confidence 99999999987554 4566888888999999987 44444333 44443321 266776 44432 23
Q ss_pred -cccCC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 010702 145 -SLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELA 221 (503)
Q Consensus 145 -~i~~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~ 221 (503)
.++.| +++++++.+.++++.+| +.++++++ ..|. +.|.+... .++|++.++++ | ++++++.
T Consensus 183 vevv~g~~t~~e~~~~~~~l~~~lG------k~~v~v~~-~~gf----i~Nrll~~---~~~ea~~l~~~-G-~~~~~id 246 (463)
T 1zcj_A 183 LEVIPSRYSSPTTIATVMSLSKKIG------KIGVVVGN-CYGF----VGNRMLAP---YYNQGFFLLEE-G-SKPEDVD 246 (463)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHTT------CEEEEBCC-STTT----THHHHHHH---HHHHHHHHHHT-T-CCHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhC------CEEEEECC-CccH----HHHHHHHH---HHHHHHHHHHc-C-CCHHHHH
Confidence 34443 69999999999999999 88999986 4554 44555444 35999999887 7 9999999
Q ss_pred HHHH
Q 010702 222 EIFD 225 (503)
Q Consensus 222 ~~~~ 225 (503)
+++.
T Consensus 247 ~~~~ 250 (463)
T 1zcj_A 247 GVLE 250 (463)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9985
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=155.26 Aligned_cols=256 Identities=16% Similarity=0.171 Sum_probs=159.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc---C---CCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE---G---QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~---g---~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
+|||+|||+|.||..+|..|+++|++|++|+|+ +..+.+.+.+... + ..++....+++++ .. +|+||+|
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~---~D~Vila 77 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAAL-GE---QDVVIVA 77 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHHH-CC---CSEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHHc-CC---CCEEEEe
Confidence 379999999999999999999999999999996 6677776554310 0 0012345677663 44 9999999
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCCCCh------------------hhHHHHHHHHHhc----CccEecccCCCCh
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY------------------LNTERRIHEASQK----GLLYLGMGVSGGE 137 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~------------------~~t~~~~~~l~~~----gi~~i~~pvsgg~ 137 (503)
||. .+++++++.+.+.+.++++||.+.|+.+ ...+.+.+.+... ++.++.+...+..
T Consensus 78 vk~-~~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~gv~~~~a~~~~pg 156 (335)
T 3ghy_A 78 VKA-PALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCVVHLTCATVSPG 156 (335)
T ss_dssp CCH-HHHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEEEECCCEEESSTT
T ss_pred CCc-hhHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEEEEEEEEEEcCCc
Confidence 999 5889999999999999999999999852 1122334443322 1111222222211
Q ss_pred hhhhcCC-cccC----CCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHH--------------------
Q 010702 138 EGARHGP-SLMP----GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHN-------------------- 192 (503)
Q Consensus 138 ~~a~~G~-~i~~----gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N-------------------- 192 (503)
.....+. .+.. +.+.+..+.+.++|+..+ ..+....+.-...+.|++.|
T Consensus 157 ~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g------~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~~ 230 (335)
T 3ghy_A 157 HIRHGNGRRLILGEPAGGASPRLASIAALFGRAG------LQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDD 230 (335)
T ss_dssp EEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTT------CEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHHS
T ss_pred EEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCC------CCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHHhcC
Confidence 1111222 2333 334566788889998877 55665555555566675544
Q ss_pred -HHHHHHHHHHHHHHHHHHHhCCCCHH-HHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHH
Q 010702 193 -GIEYGDMQLISEAYDVLKHVGGLSNA-ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGK 270 (503)
Q Consensus 193 -~i~~~~~~~~~Ea~~l~~~~g~~~~~-~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~ 270 (503)
.....+..++.|+..++++.| +++. ++.+++....... . ...++..++...++ ...+|.+..
T Consensus 231 ~~~~~l~~~~~~E~~~va~a~G-~~~~~~~~~~~~~~~~~~-~-~~sSM~qD~~~gr~----~tEid~i~G--------- 294 (335)
T 3ghy_A 231 PLVSAFCLAVMAEAKAIGARIG-CPIEQSGEARSAVTRQLG-A-FKTSMLQDAEAGRG----PLEIDALVA--------- 294 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT-CCCCSCHHHHHHHHHTTC-S-CCCTTTC-----CC----CCCHHHHTH---------
T ss_pred hHHHHHHHHHHHHHHHHHHHcC-CCCCccHHHHHHHHhccC-C-CCcHHHHHHHcCCC----CchHHHHhh---------
Confidence 234566789999999999998 7632 1222222111111 1 11233344433220 246788775
Q ss_pred HHHHHHHHcCCCcchHHHH
Q 010702 271 WTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 271 ~~~~~A~~~gvp~p~~~~A 289 (503)
..++.|+++|+|+|+....
T Consensus 295 ~vv~~a~~~gv~~P~~~~l 313 (335)
T 3ghy_A 295 SVREIGLHVGVPTPQIDTL 313 (335)
T ss_dssp HHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHH
Confidence 5789999999999988753
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.65 E-value=9.6e-17 Score=158.49 Aligned_cols=183 Identities=9% Similarity=0.035 Sum_probs=123.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
||+|||||+|.||..|+..|+++ ++| .+|||++++.+++.+.. +. .+.++++++++ +|+||+|||+.
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~------g~-~~~~~~~~~~~---~DvVilav~~~- 69 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVY------GG-KAATLEKHPEL---NGVVFVIVPDR- 69 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHT------CC-CCCSSCCCCC------CEEECSCTT-
T ss_pred CceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHc------CC-ccCCHHHHHhc---CCEEEEeCChH-
Confidence 57999999999999999999988 999 59999999988876542 23 45566666555 99999999996
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhh--cCCcccCCCCHHHHHHHHHHH
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGAR--HGPSLMPGGSFEAYNNIRDIL 162 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~--~G~~i~~gg~~~a~~~v~~ll 162 (503)
.+.+++.++. .++++||+++++.+....+.. ..+..+...+++|++.... .+..++++++++.++.++++|
T Consensus 70 ~~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~----~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 142 (276)
T 2i76_A 70 YIKTVANHLN---LGDAVLVHCSGFLSSEIFKKS----GRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIA 142 (276)
T ss_dssp THHHHHTTTC---CSSCCEEECCSSSCGGGGCSS----SEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHH
T ss_pred HHHHHHHHhc---cCCCEEEECCCCCcHHHHHHh----hccccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHH
Confidence 5677776654 578999999977655432211 1112223346776554433 333667778888899999999
Q ss_pred HHHhcccCCCCcEEEeCCcchh---HHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 010702 163 QKVAAQVDDGPCVTYIGEGGSG---NFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNA 218 (503)
Q Consensus 163 ~~ig~~~~~~~~v~~~G~~G~g---~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 218 (503)
+.+| ..++++++.+.. ...+++.|.+. .++.|+..++.+.| ++.+
T Consensus 143 ~~lG------~~~~~v~~~~~~~~~~~~~l~~n~~~----~~~~~a~~~~~~~G-l~~~ 190 (276)
T 2i76_A 143 EEIS------GKYFVIPSEKKKAYHLAAVIASNFPV----ALAYLSKRIYTLLG-LDEP 190 (276)
T ss_dssp HHHC------SCEEECCGGGHHHHHHHHHHHHTTHH----HHHHHHHHHHHTTT-CSCH
T ss_pred HHhC------CCEEEECHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcC-CChH
Confidence 9999 678999864422 23466767543 35678888899888 9877
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-15 Score=150.77 Aligned_cols=253 Identities=14% Similarity=0.137 Sum_probs=162.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC----C--CCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG----Q--LPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g----~--~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
++||+|||+|.||+.+|..|+++|++|++| +++++++.+.+.+.... . .++...+++++ +.. +|+||++
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~---~D~vila 93 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQG---ADLVLFC 93 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTT---CSEEEEC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCC---CCEEEEE
Confidence 579999999999999999999999999999 99999888877643210 0 02334456554 343 9999999
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc---CccEecccCCCChhhhhcCC-cccCCCCHHHH
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK---GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAY 155 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~---gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~ 155 (503)
||.. +++++++.+.+.+.++++||.++|+.... +.+.+.+.++ ++.+..+-.+|.......+. .+.+|. .+..
T Consensus 94 vk~~-~~~~~l~~l~~~l~~~~~iv~~~nGi~~~-~~l~~~~~~~vl~g~~~~~a~~~gP~~~~~~~~g~~~ig~-~~~~ 170 (318)
T 3hwr_A 94 VKST-DTQSAALAMKPALAKSALVLSLQNGVENA-DTLRSLLEQEVAAAVVYVATEMAGPGHVRHHGRGELVIEP-TSHG 170 (318)
T ss_dssp CCGG-GHHHHHHHHTTTSCTTCEEEEECSSSSHH-HHHHHHCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEECC-CTTT
T ss_pred cccc-cHHHHHHHHHHhcCCCCEEEEeCCCCCcH-HHHHHHcCCcEEEEEEEEeEEEcCCeEEEEcCCceEEEcC-CHHH
Confidence 9996 89999999999999999999999987543 2344443211 11112222222111111112 233444 3445
Q ss_pred HHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHH---------------------HHHHHHHHHHHHHHHHHhCC
Q 010702 156 NNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGI---------------------EYGDMQLISEAYDVLKHVGG 214 (503)
Q Consensus 156 ~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i---------------------~~~~~~~~~Ea~~l~~~~g~ 214 (503)
+.+.++|...+ ..++...+.-...+.|++-|.. ...+..++.|+..++++.|
T Consensus 171 ~~l~~~l~~~~------~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G- 243 (318)
T 3hwr_A 171 ANLAAIFAAAG------VPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEG- 243 (318)
T ss_dssp HHHHHHHHHTT------CCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhCC------CCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcC-
Confidence 67888888877 5666666666778888877742 2345578899999999988
Q ss_pred CCHH--HHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 215 LSNA--ELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 215 ~~~~--~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
++.. ....++....... ....++..++.+.+. ..+|.+.. +.++.|+++|+|+|+....
T Consensus 244 ~~l~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~tP~~~~l 304 (318)
T 3hwr_A 244 VKLPDDVALAIRRIAETMP--RQSSSTAQDLARGKR-----SEIDHLNG---------LIVRRGDALGIPVPANRVL 304 (318)
T ss_dssp CCCCTTHHHHHHHHHHHST--TCCCHHHHHHHTTCC-----CSGGGTHH---------HHHHHHHHTTCCCHHHHHH
T ss_pred CCCChHHHHHHHHHHHhcC--CCCcHHHHHHHcCCh-----hHHHHHHH---------HHHHHHHHhCCCCcHHHHH
Confidence 7632 1222221111111 112234445544322 35666665 5789999999999998753
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-14 Score=145.51 Aligned_cols=255 Identities=12% Similarity=0.097 Sum_probs=159.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----CCC---CeeeeCCHHHHHhccCCCcEEE
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----GQL---PLTGHYTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g~~---~i~~~~s~~e~~~~l~~~dvIi 77 (503)
|+|||+|||+|.||+.+|..|+++|++|++|+|++ .+.+.+.+... |.. .+....++++ +.. +|+||
T Consensus 1 M~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~---~D~vi 74 (312)
T 3hn2_A 1 MSLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGP---MDLVL 74 (312)
T ss_dssp ---CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCC---CSEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCC---CCEEE
Confidence 34799999999999999999999999999999986 36666554210 100 1223455554 344 99999
Q ss_pred EecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccCCCChhhhhcCC-cccC----
Q 010702 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMP---- 148 (503)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsgg~~~a~~G~-~i~~---- 148 (503)
++||.. +++++++.+.+.+.++++||.+.|+... .+.+.+.+... ++.++.+-..|.......++ .+..
T Consensus 75 lavk~~-~~~~~l~~l~~~l~~~~~iv~l~nGi~~-~~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~ 152 (312)
T 3hn2_A 75 VGLKTF-ANSRYEELIRPLVEEGTQILTLQNGLGN-EEALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFL 152 (312)
T ss_dssp ECCCGG-GGGGHHHHHGGGCCTTCEEEECCSSSSH-HHHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESS
T ss_pred EecCCC-CcHHHHHHHHhhcCCCCEEEEecCCCCc-HHHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCC
Confidence 999995 7889999999999999999999998732 23344444332 22223333332111111222 2323
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHH---------------------HHHHHHHHHHHHHH
Q 010702 149 GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG---------------------IEYGDMQLISEAYD 207 (503)
Q Consensus 149 gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~---------------------i~~~~~~~~~Ea~~ 207 (503)
+.+.+..+.+.++|...+ ..+....+.-...+-|++-|. ....+..++.|+.+
T Consensus 153 ~~~~~~~~~l~~~l~~~g------~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~ 226 (312)
T 3hn2_A 153 PRDTGRIEELAAMFRQAG------VDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIA 226 (312)
T ss_dssp CCCSHHHHHHHHHHHHTT------CCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhCC------CCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHH
Confidence 344567788889998877 455555555555666665553 23445678899999
Q ss_pred HHHHhC---CCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcc
Q 010702 208 VLKHVG---GLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAP 284 (503)
Q Consensus 208 l~~~~g---~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p 284 (503)
++++.| .++.+.+..++....... . ...++..++...+. ..+|.+.. +.++.|+++|+|+|
T Consensus 227 va~a~G~~~~~~~~~~~~~~~~~~~~~-~-~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P 290 (312)
T 3hn2_A 227 GANAQGLATFIADGYVDDMLEFTDAMG-E-YKPSMEIDREEGRP-----LEIAAIFR---------TPLAYGAREGIAMP 290 (312)
T ss_dssp HHHTSCCSSCCCTTHHHHHHHHHTTSC-S-CCCHHHHHHHTTCC-----CCHHHHTH---------HHHHHHHHTTCCCH
T ss_pred HHHHcCCccCCCHHHHHHHHHHHhcCC-C-CCchHHHHHHhCCC-----ccHHHHhh---------HHHHHHHHhCCCCC
Confidence 999876 233333333332222211 1 12234445544321 46777765 57899999999999
Q ss_pred hHHHH
Q 010702 285 TIAAS 289 (503)
Q Consensus 285 ~~~~A 289 (503)
+....
T Consensus 291 ~~~~l 295 (312)
T 3hn2_A 291 RVEML 295 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98753
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=151.60 Aligned_cols=253 Identities=15% Similarity=0.116 Sum_probs=163.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcc-----cCCC---CeeeeCCHHHHHhccCCCcEE
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHR-----EGQL---PLTGHYTPRDFVLSIQRPRSV 76 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-----~g~~---~i~~~~s~~e~~~~l~~~dvI 76 (503)
|+|||+|||+|.||+.+|..|+++|++|++|+|++ .+.+.+.+.. .+.. .+..+.+++++.+. +|+|
T Consensus 1 M~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~---~DlV 75 (320)
T 3i83_A 1 MSLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETK---PDCT 75 (320)
T ss_dssp --CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSC---CSEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCC---CCEE
Confidence 34799999999999999999999999999999987 3666654321 1100 12234566665534 9999
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC------hhhhhcCC-cccC-
Q 010702 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG------EEGARHGP-SLMP- 148 (503)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg------~~~a~~G~-~i~~- 148 (503)
|++||.. +++++++.+.+.+.++++||.+.|+.... +.+.+.+... .++.+++..+ .+-...++ .+..
T Consensus 76 ilavK~~-~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~-~~l~~~~~~~--~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig 151 (320)
T 3i83_A 76 LLCIKVV-EGADRVGLLRDAVAPDTGIVLISNGIDIE-PEVAAAFPDN--EVISGLAFIGVTRTAPGEIWHQAYGRLMLG 151 (320)
T ss_dssp EECCCCC-TTCCHHHHHTTSCCTTCEEEEECSSSSCS-HHHHHHSTTS--CEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred EEecCCC-ChHHHHHHHHhhcCCCCEEEEeCCCCChH-HHHHHHCCCC--cEEEEEEEeceEEcCCCEEEECCCCEEEEe
Confidence 9999996 67889999999999999999998886422 3344444332 3344332221 11112223 3333
Q ss_pred ---CCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHH--------------------HHHHHHHHHHH
Q 010702 149 ---GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGI--------------------EYGDMQLISEA 205 (503)
Q Consensus 149 ---gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i--------------------~~~~~~~~~Ea 205 (503)
+.+.+..+.+.++|+.-+ ..+.+..+.-...+.|++-|.. ...+..++.|+
T Consensus 152 ~~~~~~~~~~~~l~~~l~~~~------~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~ 225 (320)
T 3i83_A 152 NYPGGVSERVKTLAAAFEEAG------IDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEI 225 (320)
T ss_dssp ESSSCCCHHHHHHHHHHHHTT------SCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHhCC------CCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHH
Confidence 345667788889998877 5666666666677778777631 22355789999
Q ss_pred HHHHHHhCCCCHH-H-HHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCc
Q 010702 206 YDVLKHVGGLSNA-E-LAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAA 283 (503)
Q Consensus 206 ~~l~~~~g~~~~~-~-i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~ 283 (503)
..++++.| ++.+ + +..++....... . ...++..++...+. ..+|.+.. ..++.|+++|+|+
T Consensus 226 ~~va~a~G-~~l~~~~~~~~~~~~~~~~-~-~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~ 288 (320)
T 3i83_A 226 RAVAAANG-HPLPEDIVEKNVASTYKMP-P-YKTSMLVDFEAGQP-----METEVILG---------NAVRAGRRTRVAI 288 (320)
T ss_dssp HHHHHHTT-CCCCTTHHHHHHHHHHHSC-C-CCCHHHHHHHHTCC-----CCHHHHTH---------HHHHHHHHTTCCC
T ss_pred HHHHHHcC-CCCChHHHHHHHHHHhcCC-C-CCCcHHHHHHhCCC-----chHHHHcc---------HHHHHHHHhCCCC
Confidence 99999988 7632 2 222222111111 1 11233445544322 46777765 5789999999999
Q ss_pred chHHHH
Q 010702 284 PTIAAS 289 (503)
Q Consensus 284 p~~~~A 289 (503)
|+....
T Consensus 289 P~~~~l 294 (320)
T 3i83_A 289 PHLESV 294 (320)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 988753
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-16 Score=147.96 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=118.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
++|+|+|||+|.||..++..|++.|++|.++||++++.+.+.+.+ +... +.++++++ +|+||+++|..
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g-------~~~~-~~~~~~~~---~DvVi~av~~~- 94 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSA-------AQVT-FQEEAVSS---PEVIFVAVFRE- 94 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTT-------SEEE-EHHHHTTS---CSEEEECSCGG-
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------Ccee-cHHHHHhC---CCEEEECCChH-
Confidence 347899999999999999999999999999999999887765432 3444 67777665 99999999974
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHH----HHHHHHhc--CccEec--ccCCCC--hhhhhcCC--cccCCCCH
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTER----RIHEASQK--GLLYLG--MGVSGG--EEGARHGP--SLMPGGSF 152 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~----~~~~l~~~--gi~~i~--~pvsgg--~~~a~~G~--~i~~gg~~ 152 (503)
.++++++ +.+.+ ++++|||++++.+..+.+ ..+.+.+. +.+++. .++++. .++...|+ .+++|+++
T Consensus 95 ~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~ 172 (215)
T 2vns_A 95 HYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQP 172 (215)
T ss_dssp GSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTSEEEEECTTBCHHHHHTCSCSSCCEEEEEESCH
T ss_pred HHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCCCeEEeccccccHhHhcccccCCceeEEEecCCH
Confidence 5666664 55555 799999999998654421 11112111 112221 111111 01122333 67788899
Q ss_pred HHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhH
Q 010702 153 EAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMV 190 (503)
Q Consensus 153 ~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v 190 (503)
+.++.++++|+.+| .+++++|+.|+|+.++.+
T Consensus 173 ~~~~~v~~ll~~~G------~~~~~~g~~~~~~~~e~~ 204 (215)
T 2vns_A 173 EAKRAVSEMALAMG------FMPVDMGSLASAWEVEAM 204 (215)
T ss_dssp HHHHHHHHHHHHTT------CEEEECCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHcC------CceEeecchhhhhHhhhh
Confidence 99999999999999 789999999999998754
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-15 Score=148.41 Aligned_cols=180 Identities=14% Similarity=0.135 Sum_probs=134.0
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 5 ALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 5 ~~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
++++|+||| +|.||.++|..|++.|++|.+|||+++. ++.+++.. +|+||+|||..
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~--------------------~~~~~~~~---aDvVilavp~~ 76 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA--------------------VAESILAN---ADVVIVSVPIN 76 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG--------------------GHHHHHTT---CSEEEECSCGG
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc--------------------CHHHHhcC---CCEEEEeCCHH
Confidence 346899999 9999999999999999999999998641 34455565 99999999995
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc-cCCCChhhhhcCC-cccC-CCCHHHHHHHHH
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM-GVSGGEEGARHGP-SLMP-GGSFEAYNNIRD 160 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~-pvsgg~~~a~~G~-~i~~-gg~~~a~~~v~~ 160 (503)
.+.+++.++.+.+.++.+|+|++++.....+.+.+. .+.+|+.. |++|.+.....|. .+++ +.+++.++.+++
T Consensus 77 -~~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~---~~~~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~ 152 (298)
T 2pv7_A 77 -LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV---HTGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLE 152 (298)
T ss_dssp -GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH---CSSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHH
T ss_pred -HHHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHh---cCCCEEeeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHH
Confidence 699999999999999999999998876555444332 24577774 8888765555665 4443 447888999999
Q ss_pred HHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010702 161 ILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (503)
Q Consensus 161 ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 222 (503)
+|+.+| .+++++++......++++.+.-.+... .+.+++ .+.| ++.++...
T Consensus 153 l~~~~G------~~~~~~~~~~~d~~~a~~~~~p~~~a~-~l~~~l---~~~g-~~~~~~~~ 203 (298)
T 2pv7_A 153 QIQIWG------AKIYQTNATEHDHNMTYIQALRHFSTF-ANGLHL---SKQP-INLANLLA 203 (298)
T ss_dssp HHHHTT------CEEEECCHHHHHHHHHHHTHHHHHHHH-HHHHHH---TTSS-CCHHHHHH
T ss_pred HHHHcC------CEEEECCHHHHHHHHHHHHHHHHHHHH-HHHHHH---HhcC-CCHHHHHh
Confidence 999999 678888876667778888776544332 223332 2356 77765544
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-15 Score=143.94 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=112.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+|+|+|||+|.||..+|..|+++|++|++|||+++ .++.+|+||+++|+ ..
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~----------------------------~~~~aD~vi~av~~-~~ 69 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ----------------------------ATTLGEIVIMAVPY-PA 69 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC----------------------------CSSCCSEEEECSCH-HH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH----------------------------HhccCCEEEEcCCc-HH
Confidence 47899999999999999999999999999998854 11238999999995 68
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCCh-h--------h----HHHHHHHHHhcCccEecc-cCCCChhhhh---cC--C-c
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWY-L--------N----TERRIHEASQKGLLYLGM-GVSGGEEGAR---HG--P-S 145 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~-~--------~----t~~~~~~l~~~gi~~i~~-pvsgg~~~a~---~G--~-~ 145 (503)
++++++++.+.++ +++|++++++.+ . . .+.+.+.+. +.+++.+ ....++..+. .| + .
T Consensus 70 ~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~p~~~~~~~~g~~~~~ 146 (209)
T 2raf_A 70 LAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP--DSQVLKAFNTTFAATLQSGQVNGKEPTT 146 (209)
T ss_dssp HHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT--TSEEEECSTTSCHHHHHHSEETTTEECE
T ss_pred HHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC--CCcEEEeeecccHhhccccccCCCCCce
Confidence 8999998888887 999999999654 1 1 344444433 4566662 1122222111 23 3 4
Q ss_pred ccCCC-CHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHH
Q 010702 146 LMPGG-SFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGI 194 (503)
Q Consensus 146 i~~gg-~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i 194 (503)
++++| ++++.+.++++|+.++ ..++++++.+.+..+|++.|.+
T Consensus 147 ~~~~g~~~~~~~~v~~ll~~~G------~~~~~~~~i~~a~~~K~i~~l~ 190 (209)
T 2raf_A 147 VLVAGNDDSAKQRFTRALADSP------LEVKDAGKLKRARELEAMGFMQ 190 (209)
T ss_dssp EEEEESCHHHHHHHHHHTTTSS------CEEEEEESGGGHHHHHHHHHHH
T ss_pred eEEcCCCHHHHHHHHHHHHHcC------CceEeCCCHhHHHHhcchHHHH
Confidence 44555 5689999999999999 6899999999999999987764
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-14 Score=153.62 Aligned_cols=118 Identities=7% Similarity=0.124 Sum_probs=101.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HhCCCcchhhhHHHHHHHHhcCCCCCCCc
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARI---WKGGCIIRAVFLDRIKKAYQRNPNLASLV 401 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~i---W~~Gcii~s~lL~~i~~~~~~~~~~~~ll 401 (503)
.+++|++||+||+++|++|+.++|+|.|+++. .++|..+++++ |+.| .++|++++...+++.+++..+..+
T Consensus 178 ~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~-----~Gld~~~l~~v~~~w~~G-~~~S~l~e~~~~~l~~~D~~g~~~ 251 (484)
T 4gwg_A 178 EGAGHFVKMVHNGIEYGDMQLICEAYHLMKDV-----LGMAQDEMAQAFEDWNKT-ELDSFLIEITANILKFQDTDGKHL 251 (484)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SCCCHHHHHHHHHHHTTT-TTCBHHHHHHHHHHHCBCTTSSBS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHcCC-CccchHHHHHHHHHhcCCccCCcc
Confidence 48899999999999999999999999999952 34887666555 9999 789999999999998644335577
Q ss_pred chhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
+|.+.+...++++| ||++++|+++|||+|+|++||+ |+++++.+|..
T Consensus 252 ld~i~d~~~~kgtG--~wt~~~A~~~gvp~p~i~~av~~R~~S~~k~~r~~ 300 (484)
T 4gwg_A 252 LPKIRDSAGQKGTG--KWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQ 300 (484)
T ss_dssp GGGSCCCCCSSCTT--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHhccccCcchH--HHHHHHHHHcCCCchHHHHHHHHHHHhhchHHHHH
Confidence 78888888899999 9999999999999999999999 78888887754
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=6e-15 Score=146.93 Aligned_cols=249 Identities=16% Similarity=0.115 Sum_probs=152.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
|+|||+|||+|.||+.+|..|+++|++|++|+|+++.++.....+. .......++.+.+ .+.+|+||++||..
T Consensus 1 M~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~----~~~~~~~~~~~~~--~~~~D~vilavk~~- 73 (294)
T 3g17_A 1 MSLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHA----PAQDIVVKGYEDV--TNTFDVIIIAVKTH- 73 (294)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTS----CCEEEEEEEGGGC--CSCEEEEEECSCGG-
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCe----eccceecCchHhc--CCCCCEEEEeCCcc-
Confidence 4579999999999999999999999999999999764321111110 0112222333332 02389999999995
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccCCCChhhhhcCC-cccCCCCHHHHHHHH
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIR 159 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~ 159 (503)
+++++++.+.+.+.++++||.+.|+...... +... |+.++.+-.+|. ..+..++ .+.. ++.+..+.+.
T Consensus 74 ~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~-----~~~~~v~~g~~~~~a~~~~p-g~v~~~~~~~~~-~~~~~~~~l~ 146 (294)
T 3g17_A 74 QLDAVIPHLTYLAHEDTLIILAQNGYGQLEH-----IPFKNVCQAVVYISGQKKGD-VVTHFRDYQLRI-QDNALTRQFR 146 (294)
T ss_dssp GHHHHGGGHHHHEEEEEEEEECCSSCCCGGG-----CCCSCEEECEEEEEEEEETT-EEEEEEEEEEEE-ECSHHHHHHH
T ss_pred CHHHHHHHHHHhhCCCCEEEEeccCcccHhh-----CCCCcEEEEEEEEEEEEcCC-CEEEECCCEEec-CccHHHHHHH
Confidence 8999999999999888999999998754332 2211 222222211111 1111122 2222 3445566777
Q ss_pred HHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHH--------------------HHHHHHHHHHHHHHHHHHhCCCC--H
Q 010702 160 DILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNG--------------------IEYGDMQLISEAYDVLKHVGGLS--N 217 (503)
Q Consensus 160 ~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~--------------------i~~~~~~~~~Ea~~l~~~~g~~~--~ 217 (503)
++|+.-+ ..+.+..+.-...+-|++-|. ....+..++.|+.+++++.| ++ .
T Consensus 147 ~~l~~~~------~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G-~~l~~ 219 (294)
T 3g17_A 147 DLVQDSQ------IDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEG-LNFSE 219 (294)
T ss_dssp HHTTTSS------CEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTT-CCCCH
T ss_pred HHHHhCC------CceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcC-CCCCH
Confidence 7777655 455665566666677776665 23335578899999999988 65 4
Q ss_pred HHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHH
Q 010702 218 AELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAAS 289 (503)
Q Consensus 218 ~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~A 289 (503)
+.+.+.+......... ...++..++.+.+. ..+|.+.. +.++.|+++|+|+|+....
T Consensus 220 ~~~~~~~~~~~~~~~~-~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P~~~~l 276 (294)
T 3g17_A 220 QTVDTIMTIYQGYPDE-MGTSMYYDIVHQQP-----LEVEAIQG---------FIYRRAREHNLDTPYLDTI 276 (294)
T ss_dssp HHHHHHHHHHHTSCTT-CCCHHHHHHHTTCC-----CSGGGTHH---------HHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHhhcCCC-CCCcHHHHHHcCCC-----ccHHHhhh---------HHHHHHHHhCCCCChHHHH
Confidence 4444444322221111 11234445544322 35666654 5789999999999988753
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.4e-14 Score=142.86 Aligned_cols=273 Identities=12% Similarity=0.017 Sum_probs=166.8
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC--------cEEEEeCChhH-----HHHHHHhhcccCCC-------CeeeeCCHHHHH
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGF--------PISVYNRTTSK-----VDETLDRAHREGQL-------PLTGHYTPRDFV 67 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~--------~V~v~dr~~~~-----~~~l~~~~~~~g~~-------~i~~~~s~~e~~ 67 (503)
||+|||.|.||++||..|+++|+ +|.+|.|+++. .+.+...+.+..++ ++...+++++++
T Consensus 36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al 115 (391)
T 4fgw_A 36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV 115 (391)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence 89999999999999999999875 49999998753 33333332221111 578889999998
Q ss_pred hccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhH---HHHHHHHHhc-Cc--cEecccCCCChhhhh
Q 010702 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT---ERRIHEASQK-GL--LYLGMGVSGGEEGAR 141 (503)
Q Consensus 68 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t---~~~~~~l~~~-gi--~~i~~pvsgg~~~a~ 141 (503)
++ +|+||++||. ..++++++++.+++.++.+||.++.+....+ +.+.+.+.+. +. ..+..|-. ..+-++
T Consensus 116 ~~---ad~ii~avPs-~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~~~~vLsGPs~-A~EVa~ 190 (391)
T 4fgw_A 116 KD---VDIIVFNIPH-QFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELGIQCGALSGANI-ATEVAQ 190 (391)
T ss_dssp TT---CSEEEECSCG-GGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHCCEEEEEECSCC-HHHHHT
T ss_pred hc---CCEEEEECCh-hhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhCccceeccCCch-HHHhhc
Confidence 87 9999999999 5899999999999999999999988864322 1223333321 32 22333322 234444
Q ss_pred cCC-cccCCC----------CHHHHHHHHHHHHHHh-----------cccCC-CCcEEEeCCcchhHHHHhHHHHHHHHH
Q 010702 142 HGP-SLMPGG----------SFEAYNNIRDILQKVA-----------AQVDD-GPCVTYIGEGGSGNFVKMVHNGIEYGD 198 (503)
Q Consensus 142 ~G~-~i~~gg----------~~~a~~~v~~ll~~ig-----------~~~~~-~~~v~~~G~~G~g~~vK~v~N~i~~~~ 198 (503)
.-| .+.++. ++...+.++.+|..=- .++.+ -|+++.++. |....+++-.|+..+.+
T Consensus 191 ~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAa-Gi~dGlg~G~NakAALi 269 (391)
T 4fgw_A 191 EHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGC-GFVEGLGWGNNASAAIQ 269 (391)
T ss_dssp TCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHH
T ss_pred CCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHH-HHHhcCCCCCCHHHHHH
Confidence 444 333322 1222345666653211 00000 034443332 55666778899999999
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccC----C-CchhHHHHHhhc--CCcchH
Q 010702 199 MQLISEAYDVLKHV--GGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEY----G-EGELVDKILDKT--GMKGTG 269 (503)
Q Consensus 199 ~~~~~Ea~~l~~~~--g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~----~-~~~~ld~i~~~~--~~kgtG 269 (503)
...++|+.+|+... ||-++..+... .|.++ |+-++.. .++..+ . .+..++.+.+.+ +|+.+|
T Consensus 270 trGl~Em~rlg~al~~~g~~~tt~~gl-----aGlGD--Li~Tc~s--SRNr~~G~~lg~~G~~~~~~~~~~~~g~v~EG 340 (391)
T 4fgw_A 270 RVGLGEIIRFGQMFFPESREETYYQES-----AGVAD--LITTCAG--GRNVKVARLMATSGKDAWECEKELLNGQSAQG 340 (391)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHST-----TTHHH--HHHHHHS--SHHHHHHHHHHHTCCCHHHHHHHHHTTCCCTH
T ss_pred HHHHHHHHHHHHHHhcccCCceeecCC-----Ccccc--eeEEecC--CccHHHHHHHHhcCCCHHHHHHHHhCCCEEeh
Confidence 99999999999987 32333322111 12222 1111111 000001 1 134566676665 788899
Q ss_pred HHHHH----HHHHcCC--CcchHHHHHHHHHHh
Q 010702 270 KWTVQ----QAAELSV--AAPTIAASLDCRYLS 296 (503)
Q Consensus 270 ~~~~~----~A~~~gv--p~p~~~~Av~~r~~s 296 (503)
..++. .+.++|+ ++|++.+ |++-++.
T Consensus 341 v~ta~~v~~l~~~~~v~~emPI~~~-vy~IL~~ 372 (391)
T 4fgw_A 341 LITCKEVHEWLETCGSVEDFPLFEA-VYQIVYN 372 (391)
T ss_dssp HHHHHHHHHHHHHHTCSTTCHHHHH-HHHHHHS
T ss_pred HHHHHHHHHHHHHcCCCCCCCHHHH-HHHHHhC
Confidence 77765 5678899 8998874 5655443
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-13 Score=136.84 Aligned_cols=190 Identities=13% Similarity=0.073 Sum_probs=126.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHH-HHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKV-DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.++|+|||+|.||.++|++|++.|++|.+|+|++++. +...+.+ +... +++++++. +|+||++||+.
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G-------~~~~-~~~e~~~~---aDvVilavp~~- 83 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHG-------LKVA-DVKTAVAA---ADVVMILTPDE- 83 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTT-------CEEE-CHHHHHHT---CSEEEECSCHH-
T ss_pred CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCC-------CEEc-cHHHHHhc---CCEEEEeCCcH-
Confidence 4689999999999999999999999999999998763 3333322 4445 88888877 99999999985
Q ss_pred hHHHHHH-HHHhcCCCCCEEEecCCCChhhHHHHHHHHH-hcCccEec-ccCCCChhh---hh---cCC-cc-cC--CCC
Q 010702 85 PVDQTIA-ALSEHMSPGDCIIDGGNEWYLNTERRIHEAS-QKGLLYLG-MGVSGGEEG---AR---HGP-SL-MP--GGS 151 (503)
Q Consensus 85 ~v~~vl~-~l~~~l~~g~iIId~st~~~~~t~~~~~~l~-~~gi~~i~-~pvsgg~~~---a~---~G~-~i-~~--gg~ 151 (503)
...+++. ++.+.++++.+|+|+++.. . .+ ..+. ..++.++. .| +|.... .. .|. .+ .+ +.+
T Consensus 84 ~~~~v~~~~i~~~l~~~~ivi~~~gv~---~-~~-~~~~~~~~~~vv~~~P-~gp~~a~~~l~~~G~g~~~ii~~~~~~~ 157 (338)
T 1np3_A 84 FQGRLYKEEIEPNLKKGATLAFAHGFS---I-HY-NQVVPRADLDVIMIAP-KAPGHTVRSEFVKGGGIPDLIAIYQDAS 157 (338)
T ss_dssp HHHHHHHHHTGGGCCTTCEEEESCCHH---H-HT-TSSCCCTTCEEEEEEE-SSCSHHHHHHHHTTCCCCEEEEEEECSS
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCch---h-HH-HhhcCCCCcEEEeccC-CCCchhHHHHHhccCCCeEEEEecCCCC
Confidence 6688888 9999999999999985421 1 11 2222 23555665 35 332211 11 254 43 33 456
Q ss_pred HHHHHHHHHHHHHHhcccCCCC-c--EEEeCCcchhHHHHhHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 010702 152 FEAYNNIRDILQKVAAQVDDGP-C--VTYIGEGGSGNFVKMVHN-GIEYGDMQLISEAYDVLKHVGGLSNAEL 220 (503)
Q Consensus 152 ~~a~~~v~~ll~~ig~~~~~~~-~--v~~~G~~G~g~~vK~v~N-~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 220 (503)
+++.+.+..+++.+| . . ++.+..........++.+ .+..+.-.+++.++..+.+.| +++++.
T Consensus 158 ~~a~~~~~~l~~~lG------~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~G-l~~~~a 223 (338)
T 1np3_A 158 GNAKNVALSYACGVG------GGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAG-YAPEMA 223 (338)
T ss_dssp SCHHHHHHHHHHHTT------HHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT-CCHHHH
T ss_pred HHHHHHHHHHHHHcC------CCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CCHHHH
Confidence 788899999999999 3 3 566543222222333333 222334455555665666788 998765
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-13 Score=129.56 Aligned_cols=155 Identities=12% Similarity=0.143 Sum_probs=115.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.|||+|||+|.||.+||++|.++||+|.+||+.. + +.. +| |+|||++ .
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~~-------------------------~-~~~---aD--ilavP~~-a 53 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAPE-------------------------D-IRD---FE--LVVIDAH-G 53 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSGG-------------------------G-GGG---CS--EEEECSS-C
T ss_pred CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCHH-------------------------H-hcc---CC--EEEEcHH-H
Confidence 4699999999999999999999999999999830 1 233 89 8999996 8
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQK 164 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~ 164 (503)
+.+++.++.+.+.+|++|+|+|++..... .+.+...|.+|++ .|+.|.. .++.++++++++.++++++.
T Consensus 54 i~~vl~~l~~~l~~g~ivvd~sgs~~~~v---l~~~~~~g~~fvg~HPm~g~~-------~~i~a~d~~a~~~l~~L~~~ 123 (232)
T 3dfu_A 54 VEGYVEKLSAFARRGQMFLHTSLTHGITV---MDPLETSGGIVMSAHPIGQDR-------WVASALDELGETIVGLLVGE 123 (232)
T ss_dssp HHHHHHHHHTTCCTTCEEEECCSSCCGGG---GHHHHHTTCEEEEEEEEETTE-------EEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCcCHHHH---HHHHHhCCCcEEEeeeCCCCc-------eeeeCCCHHHHHHHHHHHHH
Confidence 99999999999999999999876654332 2334466888986 6887543 33444588899999999999
Q ss_pred HhcccCCCCcEEEeCCcchhHH-HHhHHHHHHHHHHHHHHHHHHHHHH
Q 010702 165 VAAQVDDGPCVTYIGEGGSGNF-VKMVHNGIEYGDMQLISEAYDVLKH 211 (503)
Q Consensus 165 ig~~~~~~~~v~~~G~~G~g~~-vK~v~N~i~~~~~~~~~Ea~~l~~~ 211 (503)
+| .+++++++...-.+ .-.+|+-. ...++.++..+++.
T Consensus 124 lG------~~vv~~~~~~hd~~~AAvsh~nh---Lv~L~~~A~~ll~~ 162 (232)
T 3dfu_A 124 LG------GSIVEIADDKRAQLAAALTYAGF---LSTLQRDASYFLDE 162 (232)
T ss_dssp TT------CEECCCCGGGHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred hC------CEEEEeCHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 99 67888876433322 22233222 34566777777743
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-13 Score=135.57 Aligned_cols=247 Identities=13% Similarity=0.025 Sum_probs=138.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee-------CCH-HHHHhccCCCcEE
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-------YTP-RDFVLSIQRPRSV 76 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~-------~s~-~e~~~~l~~~dvI 76 (503)
|+|||+|||+|.||..+|..|+ +|++|++|+|++++.+.+.+.+.. +... .+. .+. +..+|+|
T Consensus 1 M~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~-----~~~~~~~~~~~~~~~~~~---~~~~D~v 71 (307)
T 3ego_A 1 MSLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIR-----LYKGGEEFRADCSADTSI---NSDFDLL 71 (307)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEE-----EEETTEEEEECCEEESSC---CSCCSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCce-----EecCCCeecccccccccc---cCCCCEE
Confidence 4579999999999999999999 999999999999888888765431 1100 000 122 2348999
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccCCC-Chh-hhhcCCcccCC-
Q 010702 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGVSG-GEE-GARHGPSLMPG- 149 (503)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pvsg-g~~-~a~~G~~i~~g- 149 (503)
|++||.. ++++++..+.+. .++. ||...|+.... +.+.+.+... |+.++++-..+ |.. -...|. +..|
T Consensus 72 ilavK~~-~~~~~l~~l~~~-~~~~-ivs~~nGi~~~-e~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~g~-~~iG~ 146 (307)
T 3ego_A 72 VVTVKQH-QLQSVFSSLERI-GKTN-ILFLQNGMGHI-HDLKDWHVGHSIYVGIVEHGAVRKSDTAVDHTGLGA-IKWSA 146 (307)
T ss_dssp EECCCGG-GHHHHHHHTTSS-CCCE-EEECCSSSHHH-HHHHTCCCSCEEEEEEECCEEEECSSSEEEEEECCC-EEEEE
T ss_pred EEEeCHH-HHHHHHHHhhcC-CCCe-EEEecCCccHH-HHHHHhCCCCcEEEEEEeeceEECCCCEEEEeeeee-EEEEe
Confidence 9999985 789999888764 5555 88888887432 1222222211 11112211111 110 011122 2222
Q ss_pred --CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHH---------------------HHHHHHHHHHHH
Q 010702 150 --GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGI---------------------EYGDMQLISEAY 206 (503)
Q Consensus 150 --g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i---------------------~~~~~~~~~Ea~ 206 (503)
+..+.++.+..+|..-+ -.+.+..+.-...+-|++.|.. ...+..++.|+.
T Consensus 147 ~~~~~~~~~~l~~~l~~ag------~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~ 220 (307)
T 3ego_A 147 FDDAEPDRLNILFQHNHSD------FPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEAC 220 (307)
T ss_dssp CTTCCGGGGTTTTSSCCTT------SCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhhhCC------CCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHH
Confidence 12222222222222222 2344444555666777766642 233456778888
Q ss_pred HHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchH
Q 010702 207 DVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTI 286 (503)
Q Consensus 207 ~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~ 286 (503)
.+++.. +++++.+.+....... .....++..++.+.+. ..+|.|.. ..++.|+++|+|+|+.
T Consensus 221 ~va~~~---~~~~~~~~~~~~~~~~-~~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~tP~~ 282 (307)
T 3ego_A 221 RILKLE---NEEKAWERVQAVCGQT-KENRSSMLVDVIGGRQ-----TEADAIIG---------YLLKEASLQGLDAVHL 282 (307)
T ss_dssp HHHTCS---CHHHHHHHHHHHHHHT-TTCCCHHHHHHHHTCC-----CSHHHHHH---------HHHHHHHHTTCCCHHH
T ss_pred HHHhcc---ChHHHHHHHHHHHHhc-CCCCchHHHHHHcCCc-----ccHHHhhh---------HHHHHHHHcCCCCcHH
Confidence 887643 3444333322111111 1112233445544322 47888876 4789999999999998
Q ss_pred HHH
Q 010702 287 AAS 289 (503)
Q Consensus 287 ~~A 289 (503)
...
T Consensus 283 ~~l 285 (307)
T 3ego_A 283 EFL 285 (307)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.7e-12 Score=138.90 Aligned_cols=193 Identities=18% Similarity=0.282 Sum_probs=137.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-----------hcccC----CCCeeeeCCHHHHHhcc
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-----------AHREG----QLPLTGHYTPRDFVLSI 70 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------~~~~g----~~~i~~~~s~~e~~~~l 70 (503)
..+|||||+|.||..||..++.+|++|+++|++++.++...+. +.... ..++....+.+++.+
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 393 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELST-- 393 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGS--
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhh--
Confidence 3589999999999999999999999999999999876543321 10000 004566777766433
Q ss_pred CCCcEEEEecCCChhHHHH-HHHHHhcCCCCCEEEecCCCChhhHHHHHHHHH--hc--CccEeccc-CCCChhhhhcCC
Q 010702 71 QRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS--QK--GLLYLGMG-VSGGEEGARHGP 144 (503)
Q Consensus 71 ~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~--~~--gi~~i~~p-vsgg~~~a~~G~ 144 (503)
||+||.+|++...++.- +.++.+.++++.|+...|++.+.+. +++.+. ++ |.||+..| ++.-.+
T Consensus 394 --aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~--ia~~~~~p~r~ig~HFfnP~~~m~LVE------ 463 (742)
T 3zwc_A 394 --VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDD--IASSTDRPQLVIGTHFFSPAHVMRLLE------ 463 (742)
T ss_dssp --CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHH--HHTTSSCGGGEEEEECCSSTTTCCEEE------
T ss_pred --CCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHH--HHhhcCCccccccccccCCCCCCceEE------
Confidence 99999999999888754 4888888988888887766665433 333332 22 66777643 222111
Q ss_pred cccC--CCCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 010702 145 SLMP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAE 222 (503)
Q Consensus 145 ~i~~--gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 222 (503)
++. ..++++++.+..+.+.++ +.++.+.+ ..|.++ |.+ ....+.|++.++.+ | .+++++.+
T Consensus 464 -vi~g~~Ts~e~~~~~~~~~~~lg------K~pV~vkd-~pGFi~----NRi---~~~~~~ea~~l~~e-G-~~~~~id~ 526 (742)
T 3zwc_A 464 -VIPSRYSSPTTIATVMSLSKKIG------KIGVVVGN-CYGFVG----NRM---LAPYYNQGFFLLEE-G-SKPEDVDG 526 (742)
T ss_dssp -EEECSSCCHHHHHHHHHHHHHTT------CEEEECCC-STTTTH----HHH---HHHHHHHHHHHHHT-T-CCHHHHHH
T ss_pred -EecCCCCCHHHHHHHHHHHHHhC------CCCcccCC-CCCccH----HHH---hhHHHHHHHHHHHc-C-CCHHHHHH
Confidence 233 358999999999999999 88888864 556655 554 45556999999986 6 89999999
Q ss_pred HHHHh
Q 010702 223 IFDEW 227 (503)
Q Consensus 223 ~~~~~ 227 (503)
++..+
T Consensus 527 a~~~~ 531 (742)
T 3zwc_A 527 VLEEF 531 (742)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 87644
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-14 Score=144.69 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=103.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
.++|+|||+|.||..++.+|++. |+ +|.+|||++++.+++.+.... ++..+.++++++++ +|+|++|+|..
T Consensus 135 ~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~----~~~~~~~~~e~v~~---aDiVi~atp~~ 207 (312)
T 2i99_A 135 SEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQG----EVRVCSSVQEAVAG---ADVIITVTLAT 207 (312)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSS----CCEECSSHHHHHTT---CSEEEECCCCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhC----CeEEeCCHHHHHhc---CCEEEEEeCCC
Confidence 36899999999999999999886 76 899999999999988875210 15667899999887 99999999964
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec----ccCCCCh----hhhhcCC-cccCCCCHH
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG----MGVSGGE----EGARHGP-SLMPGGSFE 153 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~----~pvsgg~----~~a~~G~-~i~~gg~~~ 153 (503)
+.++.. +.+++|++|+|+++..|.. .++...+.+++..|+| +|+.+|+ .++..|+ ..|++|+.+
T Consensus 208 ---~~v~~~--~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~~~vD~~~~a~~~~G~~~~~~~~~~g~L~~~v~G~~~ 280 (312)
T 2i99_A 208 ---EPILFG--EWVKPGAHINAVGASRPDW-RELDDELMKEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKP 280 (312)
T ss_dssp ---SCCBCG--GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSEEEESCHHHHHHHCHHHHTTTCCCCEEHHHHHHTSSC
T ss_pred ---CcccCH--HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCEEEECCHHHHHhhcCCcccChhhccccHHHHhCCCCC
Confidence 333332 5688999999998888754 5666777788999999 6773443 3445565 667777644
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.3e-11 Score=123.56 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=77.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHh-CCCcEEEEe---CChhHHHHHHHhhc------ccCC------CCee-eeCCHHHHHh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAE-KGFPISVYN---RTTSKVDETLDRAH------REGQ------LPLT-GHYTPRDFVL 68 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~-~G~~V~v~d---r~~~~~~~l~~~~~------~~g~------~~i~-~~~s~~e~~~ 68 (503)
+|||+|||+|.||..+|..|++ +|++|++|+ |++++++.+.+... ..+. .++. .+.++++++.
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 81 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS 81 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence 4699999999999999999998 599999999 88888877443321 0000 0122 5567888777
Q ss_pred ccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
. +|+||++||+. ..+++++++.+.+.++++|++..+
T Consensus 82 ~---aD~Vilav~~~-~~~~v~~~l~~~l~~~~ivv~~~~ 117 (404)
T 3c7a_A 82 G---ADVVILTVPAF-AHEGYFQAMAPYVQDSALIVGLPS 117 (404)
T ss_dssp T---CSEEEECSCGG-GHHHHHHHHTTTCCTTCEEEETTC
T ss_pred C---CCEEEEeCchH-HHHHHHHHHHhhCCCCcEEEEcCC
Confidence 6 99999999995 689999999999999999998533
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=123.77 Aligned_cols=110 Identities=12% Similarity=0.173 Sum_probs=91.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|+.|+..|++|.+|||++++.+.+.+.+ +... +++++++. +|+|++++|....+
T Consensus 156 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g-------~~~~-~l~e~l~~---aDvVi~~vp~~~~t 224 (330)
T 2gcg_A 156 STVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQ-------AEFV-STPELAAQ---SDFIVVACSLTPAT 224 (330)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTT-------CEEC-CHHHHHHH---CSEEEECCCCCTTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcC-------ceeC-CHHHHHhh---CCEEEEeCCCChHH
Confidence 5899999999999999999999999999999887655544322 3444 88888887 99999999987667
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+.++ .++.+.+++|.++|++|++.+.+...+.+.+.+.++.
T Consensus 225 ~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ 266 (330)
T 2gcg_A 225 EGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIA 266 (330)
T ss_dssp TTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred HHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCcc
Confidence 7777 5677889999999999999888888898888876554
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.5e-12 Score=124.82 Aligned_cols=117 Identities=14% Similarity=0.146 Sum_probs=100.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+|||+++..+. +....+++++++. +|+|++++|....+
T Consensus 123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------------~~~~~~l~ell~~---aDiV~l~~P~t~~t 187 (290)
T 3gvx_A 123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV------------DVISESPADLFRQ---SDFVLIAIPLTDKT 187 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC------------SEECSSHHHHHHH---CSEEEECCCCCTTT
T ss_pred chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc------------ccccCChHHHhhc---cCeEEEEeeccccc
Confidence 58999999999999999999999999999999764321 2456799999988 99999999987777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~ 138 (503)
+.++ .+.++.+++|.+|||+|++.+.+...+.+.+++.++......|+..++
T Consensus 188 ~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 240 (290)
T 3gvx_A 188 RGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEP 240 (290)
T ss_dssp TTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTT
T ss_pred hhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCc
Confidence 7777 677888999999999999999999999999998888777777776654
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-11 Score=122.53 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=97.7
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|||||+|.||+.+|+.|. ..|++|.+|||++++.+...+.+ +....+++++++. +|+|++++|....
T Consensus 164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g-------~~~~~~l~ell~~---aDvVil~vp~~~~ 233 (348)
T 2w2k_A 164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALG-------AERVDSLEELARR---SDCVSVSVPYMKL 233 (348)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHT-------CEECSSHHHHHHH---CSEEEECCCCSGG
T ss_pred CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcC-------cEEeCCHHHHhcc---CCEEEEeCCCChH
Confidence 57999999999999999999 99999999999987655443332 3445688898887 9999999999877
Q ss_pred HHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCCh
Q 010702 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (503)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~ 137 (503)
++.++ .++++.+++|.+|||++++.+.+...+.+.+.+..+......+++.+
T Consensus 234 t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~E 286 (348)
T 2w2k_A 234 THHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFE 286 (348)
T ss_dssp GTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTT
T ss_pred HHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCC
Confidence 77777 46778899999999999999888888988888755544444555443
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.6e-11 Score=121.75 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=95.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||..+|+.|+..|++|.+|||++++ +...+.+ +. ..+++++++. +|+|++++|....+
T Consensus 151 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~-~~~l~~~l~~---aDvVil~vp~~~~t 218 (334)
T 2dbq_A 151 KTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELN-------AE-FKPLEDLLRE---SDFVVLAVPLTRET 218 (334)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHC-------CE-ECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcC-------cc-cCCHHHHHhh---CCEEEECCCCChHH
Confidence 68999999999999999999999999999999876 4333322 33 3588888887 99999999998767
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCCh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~ 137 (503)
+.++ .++.+.+++|.+||++|++.+.+...+.+.+.+..+...+.-+++.+
T Consensus 219 ~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~E 270 (334)
T 2dbq_A 219 YHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEE 270 (334)
T ss_dssp TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred HHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCC
Confidence 7777 47778899999999999999989888888888765554444455433
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-11 Score=123.15 Aligned_cols=120 Identities=10% Similarity=0.062 Sum_probs=99.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+|||++...+.+.+.+ +....+++++++. +|+|++++|....+
T Consensus 165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~l~ell~~---aDvV~l~~Plt~~t 234 (351)
T 3jtm_A 165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETG-------AKFVEDLNEMLPK---CDVIVINMPLTEKT 234 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHC-------CEECSCHHHHGGG---CSEEEECSCCCTTT
T ss_pred CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCC-------CeEcCCHHHHHhc---CCEEEECCCCCHHH
Confidence 5899999999999999999999999999999875555444433 4556799999988 99999999987777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg 136 (503)
+.++ .+.++.+++|.+|||++.+...+...+.+.+++..+......|+..
T Consensus 235 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~ 285 (351)
T 3jtm_A 235 RGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDP 285 (351)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSS
T ss_pred HHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCC
Confidence 7777 6777889999999999999999999999999887665443444443
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-11 Score=121.65 Aligned_cols=118 Identities=13% Similarity=0.147 Sum_probs=97.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|+++...|++|.+|||++.. +...+.+ +....++++++++ +|+|++++|....+
T Consensus 161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~~~~~l~ell~~---aDiV~l~~Plt~~t 229 (352)
T 3gg9_A 161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERARADG-------FAVAESKDALFEQ---SDVLSVHLRLNDET 229 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHHHHTT-------CEECSSHHHHHHH---CSEEEECCCCSTTT
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHHHhcC-------ceEeCCHHHHHhh---CCEEEEeccCcHHH
Confidence 58999999999999999999999999999998643 3333332 4566799999988 99999999987777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
+.++ .+.++.+++|.++||++++...+...+.+.+++..+......|+.
T Consensus 230 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~ 279 (352)
T 3gg9_A 230 RSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFE 279 (352)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCS
T ss_pred HHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccC
Confidence 7766 577888999999999999999999999999998877544444443
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-12 Score=123.52 Aligned_cols=159 Identities=14% Similarity=0.129 Sum_probs=112.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|||||||+|.||..++.+|.+.|++| .+||+++ +.+ . .+.+++++++ .++|+|++|+|+. .
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~------------~--~~~~~~~l~~--~~~DvVv~~~~~~-~ 62 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHE------------K--MVRGIDEFLQ--REMDVAVEAASQQ-A 62 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCT------------T--EESSHHHHTT--SCCSEEEECSCHH-H
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chh------------h--hcCCHHHHhc--CCCCEEEECCCHH-H
Confidence 48999999999999999999999997 6999985 211 1 3678999883 2399999999985 3
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhH---HHHHHHHHhcCcc-EecccCCCChhhhhcCCcccCCCCHHHHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNT---ERRIHEASQKGLL-YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDI 161 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t---~~~~~~l~~~gi~-~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~l 161 (503)
..+++. ..+..|..|++.++..+... +++.+..+++|.. ++++|++|+...+..+.. +++...+...++.
T Consensus 63 ~~~~~~---~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~ 136 (236)
T 2dc1_A 63 VKDYAE---KILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFSASE---LIEEIVLTTRKNW 136 (236)
T ss_dssp HHHHHH---HHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHHHHHTGG---GEEEEEEEEEEEG
T ss_pred HHHHHH---HHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChHHHHHhhc---cccEEEEEEEcCh
Confidence 343433 33557899999988764433 5677777777877 789999999877665542 4444333334444
Q ss_pred HHHHhcccCCCCcEEEeCCcc-hhHHHHhHHHHHH
Q 010702 162 LQKVAAQVDDGPCVTYIGEGG-SGNFVKMVHNGIE 195 (503)
Q Consensus 162 l~~ig~~~~~~~~v~~~G~~G-~g~~vK~v~N~i~ 195 (503)
++..+ ++++|.|+.+ .+..+|...|.+.
T Consensus 137 ~~~~~------~~~~~~G~~~~~~~~~~~~~n~~~ 165 (236)
T 2dc1_A 137 RQFGR------KGVIFEGSASEAAQKFPKNLNVAA 165 (236)
T ss_dssp GGTTS------CEEEEEEEHHHHHHHSTTCCHHHH
T ss_pred HHcCc------ceEEEeccHHHHHHHCCchHHHHH
Confidence 44445 6788898853 3346777777654
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.1e-11 Score=119.76 Aligned_cols=107 Identities=15% Similarity=0.204 Sum_probs=90.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|+.|...|++|.+|||+++..+ + +....++++++++ +|+|++++|....+
T Consensus 165 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g-------~~~~~~l~ell~~---aDvVil~vP~~~~t 229 (333)
T 3ba1_A 165 KRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT-----N-------YTYYGSVVELASN---SDILVVACPLTPET 229 (333)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----C-------SEEESCHHHHHHT---CSEEEECSCCCGGG
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----C-------ceecCCHHHHHhc---CCEEEEecCCChHH
Confidence 5899999999999999999999999999999976421 1 3456789998887 99999999997777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
+.++ .++++.+++|.+|||++++...++..+.+.+.+..+..
T Consensus 230 ~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~g 272 (333)
T 3ba1_A 230 THIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGG 272 (333)
T ss_dssp TTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCE
T ss_pred HHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeE
Confidence 7777 45677788999999999999999999999998765543
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-11 Score=124.33 Aligned_cols=120 Identities=14% Similarity=0.153 Sum_probs=98.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+|||+++..+.+. ......++++++++ +|+|++++|....+
T Consensus 138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---------~~~~~~~l~ell~~---aDvV~l~lPlt~~t 205 (324)
T 3evt_A 138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFH---------ETVAFTATADALAT---ANFIVNALPLTPTT 205 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCS---------EEEEGGGCHHHHHH---CSEEEECCCCCGGG
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHh---------hccccCCHHHHHhh---CCEEEEcCCCchHH
Confidence 5899999999999999999999999999999976532211 12335688899888 99999999987777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~ 138 (503)
+.++ .+.+..+++|.++||+|++...+...+.+.+++..+......|+..++
T Consensus 206 ~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EP 258 (324)
T 3evt_A 206 HHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEP 258 (324)
T ss_dssp TTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSS
T ss_pred HHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCC
Confidence 7777 677888999999999999999999999999988777655555665543
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.7e-11 Score=120.68 Aligned_cols=116 Identities=21% Similarity=0.336 Sum_probs=76.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|+++...|++|.+|||+++. .. ......+++++++. +|+|++++|....+
T Consensus 172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~-----~~-------~~~~~~sl~ell~~---aDvVil~vP~t~~t 236 (340)
T 4dgs_A 172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS-----GV-------DWIAHQSPVDLARD---SDVLAVCVAASAAT 236 (340)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT-----TS-------CCEECSSHHHHHHT---CSEEEECC------
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc-----cc-------CceecCCHHHHHhc---CCEEEEeCCCCHHH
Confidence 68999999999999999999999999999999764 11 13456799999988 99999999987788
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCCh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~ 137 (503)
+.++ .+.++.+++|.++||++.+...+...+.+.+++..+......|+..+
T Consensus 237 ~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~E 288 (340)
T 4dgs_A 237 QNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNE 288 (340)
T ss_dssp ----CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSS
T ss_pred HHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCC
Confidence 8888 67888899999999999999999999999998876655444455443
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-10 Score=118.46 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=98.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+|||++...+... + .....++++++++ +|+|++++|....+
T Consensus 174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g-------~~~~~~l~ell~~---sDvV~l~~Plt~~T 241 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--G-------AIYHDTLDSLLGA---SDIFLIAAPGRPEL 241 (345)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--T-------CEECSSHHHHHHT---CSEEEECSCCCGGG
T ss_pred CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--C-------CeEeCCHHHHHhh---CCEEEEecCCCHHH
Confidence 5899999999999999999999999999999875433221 2 3455799999988 99999999987777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~ 138 (503)
+.++ .+.++.+++|.++||++.+...+...+.+.+++..+......|+..++
T Consensus 242 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP 294 (345)
T 4g2n_A 242 KGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP 294 (345)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC
Confidence 7777 677788999999999999999999999999988765544444555443
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=117.60 Aligned_cols=116 Identities=11% Similarity=0.154 Sum_probs=93.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|+.|...|++|.+|||+++. +...+.+ +.. .+++++++. +|+|++++|....+
T Consensus 147 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~~-~~l~e~l~~---aDiVil~vp~~~~t 214 (333)
T 2d0i_A 147 KKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELK-------ARY-MDIDELLEK---SDIVILALPLTRDT 214 (333)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHT-------EEE-CCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcC-------cee-cCHHHHHhh---CCEEEEcCCCChHH
Confidence 58999999999999999999999999999999876 3333322 333 488888887 99999999998677
Q ss_pred HHHHH-HHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 87 DQTIA-ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 87 ~~vl~-~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
+.++. ++++.+++| ++||+|++...+...+.+.+.+..+...+.-+++
T Consensus 215 ~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~ 263 (333)
T 2d0i_A 215 YHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFE 263 (333)
T ss_dssp TTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCS
T ss_pred HHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCC
Confidence 77774 567788899 9999999998888888888887655444444554
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.3e-11 Score=120.75 Aligned_cols=120 Identities=12% Similarity=0.148 Sum_probs=98.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+|||++.+.+...+.+ +. ..+++++++. +|+|++++|....+
T Consensus 146 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g-------~~-~~~l~ell~~---aDvV~l~~P~t~~t 214 (330)
T 4e5n_A 146 ATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLG-------LR-QVACSELFAS---SDFILLALPLNADT 214 (330)
T ss_dssp CEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHT-------EE-ECCHHHHHHH---CSEEEECCCCSTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcC-------ce-eCCHHHHHhh---CCEEEEcCCCCHHH
Confidence 5899999999999999999999999999999975444433333 33 3489999988 99999999987677
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCCh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~ 137 (503)
+.++ .+.++.+++|.+|||++++...+...+.+.+++.++.....-|+..+
T Consensus 215 ~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E 266 (330)
T 4e5n_A 215 LHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEME 266 (330)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGG
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccc
Confidence 7777 57888899999999999999999999999999887764444455443
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=6.4e-11 Score=120.22 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=93.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+||++++... .... ++....+++++++. +|+|++++|....+
T Consensus 169 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~-------g~~~~~~l~ell~~---aDvV~l~~P~t~~t 237 (347)
T 1mx3_A 169 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-ERAL-------GLQRVSTLQDLLFH---SDCVTLHCGLNEHN 237 (347)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-HHHH-------TCEECSSHHHHHHH---CSEEEECCCCCTTC
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-Hhhc-------CCeecCCHHHHHhc---CCEEEEcCCCCHHH
Confidence 5899999999999999999999999999999876421 1222 23455689999988 99999999987777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
+.++ ++.++.+++|.++||++++.+.+...+.+.+++.++..
T Consensus 238 ~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~g 280 (347)
T 1mx3_A 238 HHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRG 280 (347)
T ss_dssp TTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEE
T ss_pred HHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcE
Confidence 7777 67778899999999999999999999999998876553
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=8.7e-11 Score=118.12 Aligned_cols=110 Identities=13% Similarity=0.159 Sum_probs=91.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeC-ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNR-TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr-~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|||||+|.||+.+|++|...|++|.+||| +++.. ...+.+ +....+++++++. +|+|++++|....
T Consensus 147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g-------~~~~~~l~ell~~---aDvVil~~p~~~~ 215 (320)
T 1gdh_A 147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEASYQ-------ATFHDSLDSLLSV---SQFFSLNAPSTPE 215 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHHHHT-------CEECSSHHHHHHH---CSEEEECCCCCTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhhhcC-------cEEcCCHHHHHhh---CCEEEEeccCchH
Confidence 5799999999999999999999999999999 87653 333322 3445589999887 9999999998766
Q ss_pred HHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
++.++ ++.++.+++|.++||++++.+.+...+.+.+++..+.
T Consensus 216 t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~ 258 (320)
T 1gdh_A 216 TRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLA 258 (320)
T ss_dssp TTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred HHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCc
Confidence 77777 5677889999999999999888888888888876544
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-11 Score=123.53 Aligned_cols=119 Identities=14% Similarity=0.129 Sum_probs=95.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+|||++...+.+. ......+++++++. +|+|++++|....+
T Consensus 141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---------~~~~~~~l~ell~~---aDvV~l~lPlt~~T 208 (324)
T 3hg7_A 141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFD---------QVYQLPALNKMLAQ---ADVIVSVLPATRET 208 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCS---------EEECGGGHHHHHHT---CSEEEECCCCCSSS
T ss_pred ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhh---------cccccCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 5899999999999999999999999999999874322110 12335688999887 99999999987777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCCh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~ 137 (503)
+.++ .+.+..+++|.++||++++...+...+.+.+++..+......|+..+
T Consensus 209 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~E 260 (324)
T 3hg7_A 209 HHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQE 260 (324)
T ss_dssp TTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSS
T ss_pred HHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCC
Confidence 7776 46677889999999999999999999999998876654444455444
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=116.38 Aligned_cols=109 Identities=14% Similarity=0.136 Sum_probs=90.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+|||++++ +...+.+ +.. .+++++++. +|+|++++|....+
T Consensus 143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~~-~~l~ell~~---aDvV~l~~p~~~~t 210 (307)
T 1wwk_A 143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVN-------GKF-VDLETLLKE---SDVVTIHVPLVEST 210 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTT-------CEE-CCHHHHHHH---CSEEEECCCCSTTT
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcC-------ccc-cCHHHHHhh---CCEEEEecCCChHH
Confidence 57999999999999999999999999999999876 3333332 333 488898887 99999999987667
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+.++ ++.++.+++|.++||++++...+...+.+.+++..+.
T Consensus 211 ~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ 252 (307)
T 1wwk_A 211 YHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIA 252 (307)
T ss_dssp TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred hhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCc
Confidence 7777 5677889999999999999888888888888876554
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.4e-11 Score=117.87 Aligned_cols=109 Identities=11% Similarity=0.176 Sum_probs=90.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+|||++++. ...+.+ +.. .+++++++. +|+|++++|....+
T Consensus 143 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g-------~~~-~~l~ell~~---aDvVvl~~P~~~~t 210 (313)
T 2ekl_A 143 KTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKIN-------AKA-VSLEELLKN---SDVISLHVTVSKDA 210 (313)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTT-------CEE-CCHHHHHHH---CSEEEECCCCCTTS
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HHHhcC-------cee-cCHHHHHhh---CCEEEEeccCChHH
Confidence 589999999999999999999999999999998764 233322 333 488898887 99999999987666
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+.++ ++.++.+++|.++||++++.+.+...+.+.+++.++.
T Consensus 211 ~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ 252 (313)
T 2ekl_A 211 KPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVY 252 (313)
T ss_dssp CCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEE
T ss_pred HHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCc
Confidence 6666 5677789999999999999988988899988876553
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-11 Score=122.01 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=95.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+|||+++..+.+. ......+++++++. +|+|++++|....+
T Consensus 140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---------~~~~~~~l~ell~~---aDiV~l~~Plt~~t 207 (315)
T 3pp8_A 140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVE---------SYVGREELRAFLNQ---TRVLINLLPNTAQT 207 (315)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCE---------EEESHHHHHHHHHT---CSEEEECCCCCGGG
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhh---------hhcccCCHHHHHhh---CCEEEEecCCchhh
Confidence 6899999999999999999999999999999976432110 01122578888887 99999999988788
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCCh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~ 137 (503)
+.++ .+.+..+++|.++||++.+...+...+.+.+++..+......|+..+
T Consensus 208 ~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~E 259 (315)
T 3pp8_A 208 VGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQE 259 (315)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSS
T ss_pred hhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCC
Confidence 8887 67888899999999999999999999999998876654444455443
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-10 Score=122.70 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=108.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+||+++.. +...+.+ +... +++++++. +|+|++++|....+
T Consensus 143 ~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g-------~~~~-~l~e~~~~---aDvV~l~~P~~~~t 210 (529)
T 1ygy_A 143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLG-------IELL-SLDDLLAR---ADFISVHLPKTPET 210 (529)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHHHHT-------CEEC-CHHHHHHH---CSEEEECCCCSTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcC-------cEEc-CHHHHHhc---CCEEEECCCCchHH
Confidence 68999999999999999999999999999998753 3333333 3333 88898888 99999999997677
Q ss_pred HHHHHH-HHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChh----hhhcCC-ccc---CC-CCHHHHH
Q 010702 87 DQTIAA-LSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE----GARHGP-SLM---PG-GSFEAYN 156 (503)
Q Consensus 87 ~~vl~~-l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~----~a~~G~-~i~---~g-g~~~a~~ 156 (503)
+.++.+ +++.+++|.+|||++++.+.+...+.+.+.+..+......+.++++ .....+ .++ .+ .+.++.+
T Consensus 211 ~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~ 290 (529)
T 1ygy_A 211 AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQD 290 (529)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHH
T ss_pred HHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHH
Confidence 888854 7888999999999999999888888888877544322222333332 223334 332 24 4677766
Q ss_pred H-----HHHHHHHHhc
Q 010702 157 N-----IRDILQKVAA 167 (503)
Q Consensus 157 ~-----v~~ll~~ig~ 167 (503)
+ ++.+...+++
T Consensus 291 ~~~~~~~~~l~~~l~~ 306 (529)
T 1ygy_A 291 RAGTDVAESVRLALAG 306 (529)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 5 5566666664
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=116.98 Aligned_cols=109 Identities=8% Similarity=0.095 Sum_probs=91.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+|||++++ +...+.+ +. ..+++++++. +|+|++++|....+
T Consensus 166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~-~~~l~ell~~---aDvV~l~~P~t~~t 233 (335)
T 2g76_A 166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSASFG-------VQ-QLPLEEIWPL---CDFITVHTPLLPST 233 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTT-------CE-ECCHHHHGGG---CSEEEECCCCCTTT
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcC-------ce-eCCHHHHHhc---CCEEEEecCCCHHH
Confidence 57999999999999999999999999999998765 2333322 33 3488898887 99999999998777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+.++ .+.++.+++|.++||++++...+...+.+.+++..+.
T Consensus 234 ~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~ 275 (335)
T 2g76_A 234 TGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCA 275 (335)
T ss_dssp TTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred HHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCcc
Confidence 7777 5788889999999999999988988899988876543
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.1e-10 Score=115.63 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=93.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|+++...|++|.+||+++.. +...+.+ +. ..+++++++. +|+|++++|....+
T Consensus 177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g-------~~-~~~l~ell~~---aDvV~l~~Plt~~T 244 (365)
T 4hy3_A 177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SMLEENG-------VE-PASLEDVLTK---SDFIFVVAAVTSEN 244 (365)
T ss_dssp SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHHHTT-------CE-ECCHHHHHHS---CSEEEECSCSSCC-
T ss_pred CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHHhhcC-------ee-eCCHHHHHhc---CCEEEEcCcCCHHH
Confidence 57999999999999999999999999999998643 3333332 33 4589999988 99999999988888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg 136 (503)
+.++ .+.+..+++|.++||++.+...+...+.+.+++..+. ...-|+..
T Consensus 245 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~ 294 (365)
T 4hy3_A 245 KRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPE 294 (365)
T ss_dssp --CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSS
T ss_pred HhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCC
Confidence 8888 6788889999999999999999999999999887665 33344443
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.12 E-value=9.9e-11 Score=120.41 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=93.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+|||++...+...+.+ +....+++++++. +|+|++++|....+
T Consensus 192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G-------~~~~~~l~ell~~---aDvV~l~~Plt~~t 261 (393)
T 2nac_A 192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELN-------LTWHATREDMYPV---CDVVTLNCPLHPET 261 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHT-------CEECSSHHHHGGG---CSEEEECSCCCTTT
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcC-------ceecCCHHHHHhc---CCEEEEecCCchHH
Confidence 5899999999999999999999999999999875544333332 3445689999887 99999999987777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
+.++ ++.++.+++|.++||++++...+...+.+.+++..+..
T Consensus 262 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~g 304 (393)
T 2nac_A 262 EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAG 304 (393)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEE
T ss_pred HHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeE
Confidence 7777 57778899999999999999888888999888765443
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=118.90 Aligned_cols=118 Identities=12% Similarity=0.045 Sum_probs=96.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|||||+|.||+.+|++|...|++ |.+|||++...+...+.+ +....+++++++. +|+|++++|....
T Consensus 165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g-------~~~~~~l~ell~~---aDvV~l~~P~t~~ 234 (364)
T 2j6i_A 165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVG-------ARRVENIEELVAQ---ADIVTVNAPLHAG 234 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTT-------EEECSSHHHHHHT---CSEEEECCCCSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcC-------cEecCCHHHHHhc---CCEEEECCCCChH
Confidence 5899999999999999999999998 999999886555444332 4555689999887 9999999999877
Q ss_pred HHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCC
Q 010702 86 VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (503)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (503)
++.++ ++.++.+++|.+|||++++...+...+.+.+++..+.....-|+
T Consensus 235 t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf 284 (364)
T 2j6i_A 235 TKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVW 284 (364)
T ss_dssp TTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred HHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecC
Confidence 77777 56778899999999999999999999999998876543333344
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-10 Score=113.93 Aligned_cols=112 Identities=11% Similarity=0.161 Sum_probs=92.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+|||+++ +. + .....+++++++. +|+|++++|....+
T Consensus 125 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~----~-------~~~~~~l~ell~~---aDvV~l~~P~~~~t 188 (303)
T 1qp8_A 125 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG----P-------WRFTNSLEEALRE---ARAAVCALPLNKHT 188 (303)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS----S-------SCCBSCSHHHHTT---CSEEEECCCCSTTT
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc----C-------cccCCCHHHHHhh---CCEEEEeCcCchHH
Confidence 5899999999999999999999999999999876 11 1 1235688888887 99999999998777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCC
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (503)
+.++ .+.++.+++|.++||+|++.+.+...+.+.+++..+.....-++
T Consensus 189 ~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~ 237 (303)
T 1qp8_A 189 RGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 237 (303)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred HHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccC
Confidence 7777 47888899999999999999888888999888765544333343
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-10 Score=116.02 Aligned_cols=118 Identities=15% Similarity=0.167 Sum_probs=96.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|+++...|++|.+|||+++.. .+. .+. ..+++++++. +|+|++++|....+
T Consensus 149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~-------~~~-~~~l~ell~~---aDvV~l~~Plt~~t 214 (343)
T 2yq5_A 149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE---FEP-------FLT-YTDFDTVLKE---ADIVSLHTPLFPST 214 (343)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG---GTT-------TCE-ECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh---hhc-------ccc-ccCHHHHHhc---CCEEEEcCCCCHHH
Confidence 589999999999999999999999999999997641 111 122 3489999988 99999999987777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~ 138 (503)
+.++ .+.+..+++|.++||++.+...+...+.+.+++..+.....-|+..++
T Consensus 215 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP 267 (343)
T 2yq5_A 215 ENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGES 267 (343)
T ss_dssp TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGG
T ss_pred HHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCC
Confidence 7766 567788999999999999999999999999988766555455555544
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.9e-10 Score=116.40 Aligned_cols=146 Identities=15% Similarity=0.081 Sum_probs=99.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhC------CCcEEEEeCChh-HHHHHHHhhcccCCCCeee----eCCHHHHHhccCCCcE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK------GFPISVYNRTTS-KVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRS 75 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~------G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~----~~s~~e~~~~l~~~dv 75 (503)
++|||||+|.||.++|++|.+. |++|.+.+++.+ ..+...+.| +.. ..+++++++. +|+
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G-------~~v~d~ta~s~aEAa~~---ADV 124 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAG-------FTEESGTLGDIWETVSG---SDL 124 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTT-------CCTTTTCEEEHHHHHHH---CSE
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCC-------CEEecCCCCCHHHHHhc---CCE
Confidence 6899999999999999999999 999988776644 334444443 222 3578899988 999
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHH--HHHhcCccEec-ccCCCChh---hh--h-----c
Q 010702 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH--EASQKGLLYLG-MGVSGGEE---GA--R-----H 142 (503)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~--~l~~~gi~~i~-~pvsgg~~---~a--~-----~ 142 (503)
||+++|+. ...++++++.+.+++|.+|+.+.... ...+.+ .....++..+- +|-..|.. .- . .
T Consensus 125 VILaVP~~-~~~eVl~eI~p~LK~GaILs~AaGf~---I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~ 200 (525)
T 3fr7_A 125 VLLLISDA-AQADNYEKIFSHMKPNSILGLSHGFL---LGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGA 200 (525)
T ss_dssp EEECSCHH-HHHHHHHHHHHHSCTTCEEEESSSHH---HHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTC
T ss_pred EEECCChH-HHHHHHHHHHHhcCCCCeEEEeCCCC---HHHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccC
Confidence 99999995 55678899999999999987766532 111221 01122444443 56554443 01 1 3
Q ss_pred CC-ccc-CCC--CHHHHHHHHHHHHHHh
Q 010702 143 GP-SLM-PGG--SFEAYNNIRDILQKVA 166 (503)
Q Consensus 143 G~-~i~-~gg--~~~a~~~v~~ll~~ig 166 (503)
|. +++ +.. +.++.+.+..++..+|
T Consensus 201 Gv~~liAv~qd~tgea~e~alala~aiG 228 (525)
T 3fr7_A 201 GINSSFAVHQDVDGRATDVALGWSVALG 228 (525)
T ss_dssp SCCEEEEEEECSSSCHHHHHHHHHHHTT
T ss_pred CccEEEEcCCCCCHHHHHHHHHHHHHCC
Confidence 44 233 333 3478899999999999
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-10 Score=118.47 Aligned_cols=117 Identities=14% Similarity=0.178 Sum_probs=92.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|+++...|++|.+||+++... .. ......+++++++. +|+|++++|....+
T Consensus 157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~-----~~------~~~~~~sl~ell~~---aDvV~lhvPlt~~T 222 (416)
T 3k5p_A 157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ-----YG------NVKPAASLDELLKT---SDVVSLHVPSSKST 222 (416)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC-----BT------TBEECSSHHHHHHH---CSEEEECCCC----
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc-----cc------CcEecCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 579999999999999999999999999999975421 01 23456799999998 99999999998777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCCh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~ 137 (503)
+.++ .+.+..+++|.++||+|.+...+...+.+.+++..+......|+..+
T Consensus 223 ~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~E 274 (416)
T 3k5p_A 223 SKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVE 274 (416)
T ss_dssp -CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSC
T ss_pred hhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCC
Confidence 7777 56778899999999999999999999999998876554444444443
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-10 Score=117.25 Aligned_cols=117 Identities=14% Similarity=0.164 Sum_probs=95.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh-
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~- 85 (503)
++|||||+|.||+.+|++|...|++|.+||++.+.. .. .....+++++++. +|+|++++|....
T Consensus 120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~----~~--------~~~~~sl~ell~~---aDiV~l~~Plt~~g 184 (381)
T 3oet_A 120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAAR----GD--------EGDFRTLDELVQE---ADVLTFHTPLYKDG 184 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHT----TC--------CSCBCCHHHHHHH---CSEEEECCCCCCSS
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHh----cc--------CcccCCHHHHHhh---CCEEEEcCcCCccc
Confidence 589999999999999999999999999999854321 11 1235789999988 9999999997766
Q ss_pred ---HHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChh
Q 010702 86 ---VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (503)
Q Consensus 86 ---v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~ 138 (503)
++.++ .+.+..+++|.++||++.+...+...+.+.+++.++......|+..++
T Consensus 185 ~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP 241 (381)
T 3oet_A 185 PYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP 241 (381)
T ss_dssp TTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTT
T ss_pred cccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCC
Confidence 66666 567788999999999999999999999999998777666666665543
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.1e-10 Score=113.12 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=94.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|+++...|++|.+|||++++. + +.. +....+++++++. +|+|++++|....+
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-------~~~~~~l~ell~~---aDvV~l~~p~~~~t 213 (333)
T 1j4a_A 147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-EKK-------GYYVDSLDDLYKQ---ADVISLHVPDVPAN 213 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-HHT-------TCBCSCHHHHHHH---CSEEEECSCCCGGG
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-Hhh-------CeecCCHHHHHhh---CCEEEEcCCCcHHH
Confidence 579999999999999999999999999999998764 2 221 1234588998887 99999999988777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCC
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGG 136 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg 136 (503)
+.++ +..++.+++|.++||++++...+...+.+.+++..+.....-|+..
T Consensus 214 ~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~ 264 (333)
T 1j4a_A 214 VHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEG 264 (333)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTT
T ss_pred HHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCC
Confidence 7777 5667889999999999999999999999999887665443344443
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.6e-10 Score=116.93 Aligned_cols=107 Identities=16% Similarity=0.216 Sum_probs=91.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|+++...|++|.+|||++... .+ .+....+++++++. +|+|++++|....+
T Consensus 146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-----~~------~~~~~~~l~ell~~---aDvV~l~~P~t~~t 211 (404)
T 1sc6_A 146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-----LG------NATQVQHLSDLLNM---SDVVSLHVPENPST 211 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC-----CT------TCEECSCHHHHHHH---CSEEEECCCSSTTT
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc-----cC------CceecCCHHHHHhc---CCEEEEccCCChHH
Confidence 589999999999999999999999999999986431 11 24556789999988 99999999998778
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+.++ .+.+..+++|.++||+|++...+...+.+.+++..+.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 253 (404)
T 1sc6_A 212 KNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA 253 (404)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEE
T ss_pred HHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCcc
Confidence 8777 5677889999999999999999999999998876543
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.3e-10 Score=112.57 Aligned_cols=103 Identities=15% Similarity=0.195 Sum_probs=87.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+|||++++.+ . ...+++++++. +|+|++++|....+
T Consensus 145 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-----~---------~~~~l~ell~~---aDvV~l~~p~~~~t 207 (311)
T 2cuk_A 145 LTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP-----Y---------PFLSLEELLKE---ADVVSLHTPLTPET 207 (311)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS-----S---------CBCCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc-----c---------ccCCHHHHHhh---CCEEEEeCCCChHH
Confidence 5799999999999999999999999999999976532 1 13578898887 99999999998777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+.++ .+.++.+++|.++||++++...+...+.+.++ ..+.
T Consensus 208 ~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ 248 (311)
T 2cuk_A 208 HRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLF 248 (311)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSS
T ss_pred HhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCC
Confidence 7777 36778899999999999998888888888887 5443
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.5e-10 Score=113.75 Aligned_cols=116 Identities=10% Similarity=0.148 Sum_probs=93.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh-
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~- 85 (503)
++|||||+|.||+.+|++|...|++|.+||++++.. ..+ . ...+++++++. +|+|++++|....
T Consensus 117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g-------~-~~~~l~ell~~---aDvV~l~~Plt~~g 181 (380)
T 2o4c_A 117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR----EPD-------G-EFVSLERLLAE---ADVISLHTPLNRDG 181 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH----STT-------S-CCCCHHHHHHH---CSEEEECCCCCSSS
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh----ccC-------c-ccCCHHHHHHh---CCEEEEeccCcccc
Confidence 589999999999999999999999999999876532 111 1 24689999987 9999999998766
Q ss_pred ---HHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCCh
Q 010702 86 ---VDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (503)
Q Consensus 86 ---v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~ 137 (503)
+..++ .++++.+++|.++||+|++...+...+.+.+++..+.....-|...+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~E 237 (380)
T 2o4c_A 182 EHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGE 237 (380)
T ss_dssp SSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTT
T ss_pred ccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccC
Confidence 66666 56788899999999999999999999999998866544433444433
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=9e-10 Score=111.30 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=96.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|+++...|++|.+|||+++.. + +.. +. ..+++++++. +|+|++++|....+
T Consensus 146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-------~~-~~~l~ell~~---aDvV~~~~P~~~~t 211 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPD-------FD-YVSLEDLFKQ---SDVIDLHVPGIEQN 211 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTT-------CE-ECCHHHHHHH---CSEEEECCCCCGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhc-------cc-cCCHHHHHhc---CCEEEEcCCCchhH
Confidence 579999999999999999999999999999987643 1 111 22 3488999887 99999999998777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~ 138 (503)
+.++ .+.++.+++|.++||+|++...+...+.+.+++.++.-...-|+-.++
T Consensus 212 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP 264 (333)
T 1dxy_A 212 THIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET 264 (333)
T ss_dssp TTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCC
Confidence 7777 567788999999999999999999999999988766544444555443
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.95 E-value=8.4e-10 Score=111.44 Aligned_cols=117 Identities=16% Similarity=0.152 Sum_probs=94.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|++|...|++|.+|||++++. + +.. +. ..+++++++. +|+|++++|....+
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-------~~-~~~l~ell~~---aDvV~~~~p~t~~t 212 (331)
T 1xdw_A 147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-EDY-------CT-QVSLDEVLEK---SDIITIHAPYIKEN 212 (331)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TTT-------CE-ECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hhc-------cc-cCCHHHHHhh---CCEEEEecCCchHH
Confidence 579999999999999999999999999999987643 1 111 22 4488998887 99999999987777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCCh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~ 137 (503)
+.++ .+.++.+++|.++||+|++...+...+.+.+++.++.....-|+..+
T Consensus 213 ~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~E 264 (331)
T 1xdw_A 213 GAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGE 264 (331)
T ss_dssp CCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTG
T ss_pred HHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCC
Confidence 7777 56778899999999999999999999999998876654444455444
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-09 Score=95.08 Aligned_cols=105 Identities=18% Similarity=0.165 Sum_probs=83.5
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
.+|+|||+ |.||..++++|.+.||+|+.+|++.+.+ . ++..+.|++|+.+. +|++++++|+
T Consensus 15 ~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~-------G~~~~~s~~el~~~---vDlvii~vp~ 79 (138)
T 1y81_A 15 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----E-------GLKCYRSVRELPKD---VDVIVFVVPP 79 (138)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----T-------TEECBSSGGGSCTT---CCEEEECSCH
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----C-------CeeecCCHHHhCCC---CCEEEEEeCH
Confidence 57999999 9999999999999999866666553221 1 35778899998776 9999999996
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
..+.++++++.. ...+.++++.++. .+++.+.+++.|+++++..
T Consensus 80 -~~v~~v~~~~~~-~g~~~i~~~~~~~----~~~l~~~a~~~Gi~~igpn 123 (138)
T 1y81_A 80 -KVGLQVAKEAVE-AGFKKLWFQPGAE----SEEIRRFLEKAGVEYSFGR 123 (138)
T ss_dssp -HHHHHHHHHHHH-TTCCEEEECTTSC----CHHHHHHHHHHTCEEECSC
T ss_pred -HHHHHHHHHHHH-cCCCEEEEcCccH----HHHHHHHHHHCCCEEEcCC
Confidence 688999988776 4556788888774 4677777888899999743
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.6e-09 Score=104.23 Aligned_cols=108 Identities=20% Similarity=0.208 Sum_probs=82.7
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh--
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP-- 85 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~-- 85 (503)
+|+|||+|.||.+++..|.+.|++|++|||++++.+++.+... .. ..+++++ .. +|+||+++|.+..
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~------~~-~~~~~~~-~~---~Divi~~tp~~~~~~ 186 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFG------LR-AVPLEKA-RE---ARLLVNATRVGLEDP 186 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHT------CE-ECCGGGG-GG---CSEEEECSSTTTTCT
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------cc-hhhHhhc-cC---CCEEEEccCCCCCCC
Confidence 7999999999999999999999999999999998888776431 23 4567776 66 9999999998731
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+..++. .+.+++|.+|+|++.. +..+ ++.+.++++|+.+++
T Consensus 187 ~~~~l~--~~~l~~g~~viD~~~~-p~~t-~l~~~a~~~g~~~v~ 227 (263)
T 2d5c_A 187 SASPLP--AELFPEEGAAVDLVYR-PLWT-RFLREAKAKGLKVQT 227 (263)
T ss_dssp TCCSSC--GGGSCSSSEEEESCCS-SSSC-HHHHHHHHTTCEEEC
T ss_pred CCCCCC--HHHcCCCCEEEEeecC-Cccc-HHHHHHHHCcCEEEC
Confidence 112222 3567889999999886 4444 466667777877764
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.4e-09 Score=103.53 Aligned_cols=137 Identities=16% Similarity=0.141 Sum_probs=95.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|+|||+|.||+.+|+.|...|++|.+|||++++.+.+.+.+. ......+++++++. +|+|++++|... +
T Consensus 158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~-----~~~~~~~l~~~l~~---aDvVi~~~p~~~-i 228 (300)
T 2rir_A 158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGL-----VPFHTDELKEHVKD---IDICINTIPSMI-L 228 (300)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-----EEEEGGGHHHHSTT---CSEEEECCSSCC-B
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC-----eEEchhhHHHHhhC---CCEEEECCChhh-h
Confidence 58999999999999999999999999999999987766554331 11113466676665 999999999852 2
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc-CCCChhhhhcCCcccCCCCHHHHHHHHHHHHHH
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG-VSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p-vsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~i 165 (503)
. +.....++++.++||++....... + +.....|+.++++| +.|+...+..+. -.++.+.+++..+
T Consensus 229 ~---~~~~~~mk~g~~lin~a~g~~~~~--~-~~a~~~G~~~i~~pg~~g~v~~a~a~~--------l~~~~~~~~l~~~ 294 (300)
T 2rir_A 229 N---QTVLSSMTPKTLILDLASRPGGTD--F-KYAEKQGIKALLAPGLPGIVAPKTAGQ--------ILANVLSKLLAEI 294 (300)
T ss_dssp C---HHHHTTSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECCCHHHHHCHHHHHH--------HHHHHHHHHHHHH
T ss_pred C---HHHHHhCCCCCEEEEEeCCCCCcC--H-HHHHHCCCEEEECCCCCCcHHHHHHHH--------HHHHHHHHHHHHh
Confidence 1 234567889999999998643321 2 34456689888887 555443333321 2245666777666
Q ss_pred h
Q 010702 166 A 166 (503)
Q Consensus 166 g 166 (503)
+
T Consensus 295 ~ 295 (300)
T 2rir_A 295 Q 295 (300)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-09 Score=105.99 Aligned_cols=109 Identities=16% Similarity=0.217 Sum_probs=81.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh-
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP- 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~- 85 (503)
++|+|||+|.||++++..|.+.|++|++|||++++.+++.+.. ++....+++++++. +|+||.++|.+..
T Consensus 130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~------g~~~~~~~~~~~~~---aDiVi~atp~~~~~ 200 (275)
T 2hk9_A 130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF------PLEVVNSPEEVIDK---VQVIVNTTSVGLKD 200 (275)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTS------CEEECSCGGGTGGG---CSEEEECSSTTSST
T ss_pred CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHc------CCeeehhHHhhhcC---CCEEEEeCCCCCCC
Confidence 5899999999999999999999999999999999888776542 24555577777766 9999999998642
Q ss_pred -HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 86 -VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 86 -v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+...+. .+.++++.+|+|++. . .+ ++.+..+++|+.+++
T Consensus 201 ~~~~~i~--~~~l~~g~~viDv~~-~--~t-~ll~~a~~~g~~~v~ 240 (275)
T 2hk9_A 201 EDPEIFN--YDLIKKDHVVVDIIY-K--ET-KLLKKAKEKGAKLLD 240 (275)
T ss_dssp TCCCSSC--GGGCCTTSEEEESSS-S--CC-HHHHHHHHTTCEEEC
T ss_pred CCCCCCC--HHHcCCCCEEEEcCC-C--hH-HHHHHHHHCcCEEEC
Confidence 111221 345788999999988 2 22 344455567777664
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.85 E-value=4.4e-08 Score=85.05 Aligned_cols=116 Identities=15% Similarity=0.083 Sum_probs=78.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-hcccCCCCeee-eCCHHHHHh-ccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTG-HYTPRDFVL-SIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~g~~~i~~-~~s~~e~~~-~l~~~dvIil~vp~ 82 (503)
.|+|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+.+. +.. -+.. ..+.+.+.+ .++.+|+||+++|+
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~----~~~~d~~~~~~l~~~~~~~~d~vi~~~~~ 79 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL----VINGDCTKIKTLEDAGIEDADMYIAVTGK 79 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE----EEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcE----EEEcCCCCHHHHHHcCcccCCEEEEeeCC
Confidence 4689999999999999999999999999999999988877653 211 0111 123333322 24569999999988
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
+ .....+..+.+.+.++.+|+..++.. . .+.+.+.|+.++-+|
T Consensus 80 ~-~~~~~~~~~~~~~~~~~ii~~~~~~~--~----~~~l~~~g~~~v~~p 122 (140)
T 1lss_A 80 E-EVNLMSSLLAKSYGINKTIARISEIE--Y----KDVFERLGVDVVVSP 122 (140)
T ss_dssp H-HHHHHHHHHHHHTTCCCEEEECSSTT--H----HHHHHHTTCSEEECH
T ss_pred c-hHHHHHHHHHHHcCCCEEEEEecCHh--H----HHHHHHcCCCEEECH
Confidence 5 44444555566677778887655432 2 234556677776555
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.5e-09 Score=93.94 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=82.0
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCCh--hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTT--SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGl----G~mG~~lA~~L~~~G~~V~v~dr~~--~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
.+|+|||+ |.||..++++|.+.||+|+.+|++. +.+ . ++..+.|++|+.+. +|++++++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~-------G~~~~~sl~el~~~---~Dlvii~v 78 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----L-------GQQGYATLADVPEK---VDMVDVFR 78 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----T-------TEECCSSTTTCSSC---CSEEECCS
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----C-------CeeccCCHHHcCCC---CCEEEEEe
Confidence 57999999 8999999999999999976666654 211 1 35677888887765 89999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
|+ ..+.++++++.+ ...+.++++.++. .+++.+.+++.|+++++.
T Consensus 79 p~-~~v~~v~~~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~igp 123 (145)
T 2duw_A 79 NS-EAAWGVAQEAIA-IGAKTLWLQLGVI----NEQAAVLAREAGLSVVMD 123 (145)
T ss_dssp CS-THHHHHHHHHHH-HTCCEEECCTTCC----CHHHHHHHHTTTCEEECS
T ss_pred CH-HHHHHHHHHHHH-cCCCEEEEcCChH----HHHHHHHHHHcCCEEEcC
Confidence 97 588999988776 3456788887654 567777888889999964
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.1e-09 Score=90.82 Aligned_cols=91 Identities=16% Similarity=0.278 Sum_probs=73.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|+|||+|.||..++..|.+.|++|++|||++++.+++.+.... .+....++.+++.. +|+||.++|.+..+
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~----~~~~~~~~~~~~~~---~Divi~at~~~~~~ 94 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEY----EYVLINDIDSLIKN---NDVIITATSSKTPI 94 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTC----EEEECSCHHHHHHT---CSEEEECSCCSSCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCC----ceEeecCHHHHhcC---CCEEEEeCCCCCcE
Confidence 589999999999999999999999999999999998887765321 23456788888877 99999999986331
Q ss_pred HHHHHHHHhcCCCCCEEEecCCC
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+. ...+.+|.+++|.+..
T Consensus 95 ---~~--~~~l~~g~~vid~~~p 112 (144)
T 3oj0_A 95 ---VE--ERSLMPGKLFIDLGNP 112 (144)
T ss_dssp ---BC--GGGCCTTCEEEECCSS
T ss_pred ---ee--HHHcCCCCEEEEccCC
Confidence 11 1457789999998763
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-07 Score=83.33 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=76.8
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecC
Q 010702 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVK 81 (503)
Q Consensus 4 ~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp 81 (503)
.++.+|.|+|+|.+|..+|+.|.+.|++|+++|+++++++.+.+.+... +....+..+... .++++|.||+++|
T Consensus 5 ~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~----i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 5 DICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRA----VLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEE----EESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCE----EECCCCCHHHHHhcCcccCCEEEEECC
Confidence 3456899999999999999999999999999999999998887654321 122223333333 2345999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
++.....++..+.. +.++..||-..+. + ...+.+.+.|+..+-.|
T Consensus 81 ~~~~n~~~~~~a~~-~~~~~~iiar~~~-~----~~~~~l~~~G~d~vi~p 125 (140)
T 3fwz_A 81 NGYEAGEIVASARA-KNPDIEIIARAHY-D----DEVAYITERGANQVVMG 125 (140)
T ss_dssp CHHHHHHHHHHHHH-HCSSSEEEEEESS-H----HHHHHHHHTTCSEEEEH
T ss_pred ChHHHHHHHHHHHH-HCCCCeEEEEECC-H----HHHHHHHHCCCCEEECc
Confidence 86544434443333 3344344433332 1 22345566777665443
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-07 Score=82.84 Aligned_cols=121 Identities=13% Similarity=0.120 Sum_probs=75.1
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEE
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVII 78 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil 78 (503)
|...++++|.|+|+|.+|..+|..|.+.|++|.++|+++++++.+.+.+... +....+..+.+. .++++|+||+
T Consensus 1 m~~~~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~----~~gd~~~~~~l~~~~~~~~d~vi~ 76 (141)
T 3llv_A 1 MTENGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDA----VIADPTDESFYRSLDLEGVSAVLI 76 (141)
T ss_dssp -----CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEE----EECCTTCHHHHHHSCCTTCSEEEE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcE----EECCCCCHHHHHhCCcccCCEEEE
Confidence 4433456899999999999999999999999999999999998887654311 122222233333 2356999999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
++|+. .....+-.....+....+|.-..+.. . .+.+.+.|+..+-.|
T Consensus 77 ~~~~~-~~n~~~~~~a~~~~~~~iia~~~~~~--~----~~~l~~~G~~~vi~p 123 (141)
T 3llv_A 77 TGSDD-EFNLKILKALRSVSDVYAIVRVSSPK--K----KEEFEEAGANLVVLV 123 (141)
T ss_dssp CCSCH-HHHHHHHHHHHHHCCCCEEEEESCGG--G----HHHHHHTTCSEEEEH
T ss_pred ecCCH-HHHHHHHHHHHHhCCceEEEEEcChh--H----HHHHHHcCCCEEECH
Confidence 99964 33333333333333556666554432 2 233455677655433
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-07 Score=86.43 Aligned_cols=116 Identities=8% Similarity=0.027 Sum_probs=77.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHhc--cCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVLS--IQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~~~~--l~~~dvIil~vp~ 82 (503)
++|.|+|+|.||..+|+.|.+. |++|+++|+++++.+.+.+.+... +... .+.+.+.+. ++.+|+||+++|+
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~----~~gd~~~~~~l~~~~~~~~ad~vi~~~~~ 115 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNV----ISGDATDPDFWERILDTGHVKLVLLAMPH 115 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCE----EECCTTCHHHHHTBCSCCCCCEEEECCSS
T ss_pred CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCE----EEcCCCCHHHHHhccCCCCCCEEEEeCCC
Confidence 5899999999999999999999 999999999999988877654210 1111 233333332 5679999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
+.....++..+.. +.+...|+..++ .+.. .+.+.+.|+.++..|
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~ii~~~~-~~~~----~~~l~~~G~~~vi~p 159 (183)
T 3c85_A 116 HQGNQTALEQLQR-RNYKGQIAAIAE-YPDQ----LEGLLESGVDAAFNI 159 (183)
T ss_dssp HHHHHHHHHHHHH-TTCCSEEEEEES-SHHH----HHHHHHHTCSEEEEH
T ss_pred hHHHHHHHHHHHH-HCCCCEEEEEEC-CHHH----HHHHHHcCCCEEEch
Confidence 6555555444443 444444444333 2222 235566688877665
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.7e-07 Score=78.78 Aligned_cols=105 Identities=11% Similarity=0.022 Sum_probs=73.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEEEecC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIil~vp 81 (503)
++++|.|+|+|.||..++..|.+.| ++|.+++|++++.+.+...+.. ... ..+.+++.+.++.+|+||.++|
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~-----~~~~d~~~~~~~~~~~~~~d~vi~~~~ 78 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVA-----TKQVDAKDEAGLAKALGGFDAVISAAP 78 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCE-----EEECCTTCHHHHHHHTTTCSEEEECSC
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCc-----EEEecCCCHHHHHHHHcCCCEEEECCC
Confidence 4568999999999999999999999 9999999999988877643211 111 2234444444556999999998
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH 119 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~ 119 (503)
.. ....++.... ..|..++|.++.. ..++++.+
T Consensus 79 ~~-~~~~~~~~~~---~~g~~~~~~~~~~-~~~~~~~~ 111 (118)
T 3ic5_A 79 FF-LTPIIAKAAK---AAGAHYFDLTEDV-AATNAVRA 111 (118)
T ss_dssp GG-GHHHHHHHHH---HTTCEEECCCSCH-HHHHHHHH
T ss_pred ch-hhHHHHHHHH---HhCCCEEEecCcH-HHHHHHHH
Confidence 64 3444444443 3677888887654 34544433
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=8.8e-08 Score=95.63 Aligned_cols=100 Identities=15% Similarity=0.035 Sum_probs=71.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhc--c-cCCCCeee-eCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAH--R-EGQLPLTG-HYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~--~-~g~~~i~~-~~s~~e~~~~l~~~dvIil~ 79 (503)
||||+|||+|.||.++|..|+++| ++|.+|||++++++.+..... . .....+.. ..++ +.+++ +|+||++
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~---aDvViia 76 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALAD---ADVVIST 76 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCC---CCEEEEe
Confidence 368999999999999999999999 799999999988876653211 0 00001233 3555 44444 9999999
Q ss_pred cCCChh-------------------HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 VKAGSP-------------------VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 vp~~~~-------------------v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+|.+.. +++++..+.+.. ++.+|+..+|..
T Consensus 77 v~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~ 125 (309)
T 1hyh_A 77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPV 125 (309)
T ss_dssp CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSH
T ss_pred cCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcH
Confidence 998653 467777777765 566777777743
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-07 Score=94.58 Aligned_cols=114 Identities=12% Similarity=0.031 Sum_probs=84.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|++||||||+|.||..++..|.+. +++|. ++|+++++.+++.+.. ++. +.+++++++. +++|+|++|+|+
T Consensus 2 m~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~------~~~-~~~~~~~l~~-~~~D~V~i~tp~ 73 (331)
T 4hkt_A 2 MTVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAY------GCE-VRTIDAIEAA-ADIDAVVICTPT 73 (331)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT------TCE-ECCHHHHHHC-TTCCEEEECSCG
T ss_pred CceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHh------CCC-cCCHHHHhcC-CCCCEEEEeCCc
Confidence 567999999999999999999986 77765 7999999988887653 356 8899999883 238999999999
Q ss_pred ChhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEec
Q 010702 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
....+.+...+ ..|. ++++- .+..+.+.+++.+.++++|+.+.-
T Consensus 74 ~~h~~~~~~al----~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v 119 (331)
T 4hkt_A 74 DTHADLIERFA----RAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMV 119 (331)
T ss_dssp GGHHHHHHHHH----HTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hhHHHHHHHHH----HcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 76555444333 2344 55543 255667788888888888776553
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.67 E-value=8.1e-08 Score=95.20 Aligned_cols=113 Identities=14% Similarity=0.058 Sum_probs=80.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|+|||+|.||..+|+.|...|.+|.+|||++++.+.+.+.+.. .....++++++.. +|+|++++|.+..-
T Consensus 156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-----~~~~~~l~~~l~~---aDvVi~~~p~~~i~ 227 (293)
T 3d4o_A 156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGME-----PFHISKAAQELRD---VDVCINTIPALVVT 227 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSE-----EEEGGGHHHHTTT---CSEEEECCSSCCBC
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCe-----ecChhhHHHHhcC---CCEEEECCChHHhC
Confidence 589999999999999999999999999999999876655543311 1112456666655 99999999975321
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCC
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (503)
+ +.+..++++.++||++....... . +.....|+.++.+|-.
T Consensus 228 ~----~~l~~mk~~~~lin~ar~~~~~~--~-~~a~~~Gv~~~~~~~l 268 (293)
T 3d4o_A 228 A----NVLAEMPSHTFVIDLASKPGGTD--F-RYAEKRGIKALLVPGL 268 (293)
T ss_dssp H----HHHHHSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECCCH
T ss_pred H----HHHHhcCCCCEEEEecCCCCCCC--H-HHHHHCCCEEEECCCC
Confidence 2 34456789999999997543221 2 4445568887766533
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=94.90 Aligned_cols=106 Identities=13% Similarity=0.113 Sum_probs=73.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHH----hhccc-CCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLD----RAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~----~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
.+||+|||+|.||.++|..|+.+|+ +|.+||+++++++.... ..... ...++..+.+. +.+++ +|+||++
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~---aDiVi~a 79 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISG---SDVVIIT 79 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC---CCEEEEe
Confidence 3689999999999999999999998 99999999987765321 10000 00135555666 44444 9999999
Q ss_pred cCCC---------------hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHH
Q 010702 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTER 116 (503)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~ 116 (503)
++.+ ...++++..+.+.. ++.+++..||.....+..
T Consensus 80 vg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~~~~~~~ 130 (317)
T 2ewd_A 80 ASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPLDVMVSH 130 (317)
T ss_dssp CCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHH
T ss_pred CCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHH
Confidence 9322 23566677787775 588999888854433333
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-07 Score=94.44 Aligned_cols=114 Identities=14% Similarity=0.166 Sum_probs=83.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
+++||||||+|.||..++..|.+. +++|. ++|+++++.+++.+.. ++..+.++++++++ +++|+|++|+|
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~i~tp 84 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT------GARGHASLTDMLAQ-TDADIVILTTP 84 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH------CCEEESCHHHHHHH-CCCSEEEECSC
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc------CCceeCCHHHHhcC-CCCCEEEECCC
Confidence 346899999999999999999987 67754 8999999988887653 35778999999873 23899999999
Q ss_pred CChhHHHHHHHHHhcCCCCCE-EEec-CCCChhhHHHHHHHHHhcCccEe
Q 010702 82 AGSPVDQTIAALSEHMSPGDC-IIDG-GNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~i-IId~-st~~~~~t~~~~~~l~~~gi~~i 129 (503)
+....+.+...+ ..|.. +++- -+....+.+++.+..++.|+.+.
T Consensus 85 ~~~h~~~~~~al----~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~ 130 (354)
T 3q2i_A 85 SGLHPTQSIECS----EAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLF 130 (354)
T ss_dssp GGGHHHHHHHHH----HTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred cHHHHHHHHHHH----HCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 976544443332 34544 4432 23456677777777777776554
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.6e-07 Score=92.43 Aligned_cols=114 Identities=13% Similarity=0.111 Sum_probs=84.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
++||||||+|.||..++..|.+. +++|. ++|+++++.+.+.+.. +...+.++++++++ .++|+|++|+|+.
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~~~~l~~-~~~D~V~i~tp~~ 76 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEAN------GAEAVASPDEVFAR-DDIDGIVIGSPTS 76 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTT------TCEEESSHHHHTTC-SCCCEEEECSCGG
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc------CCceeCCHHHHhcC-CCCCEEEEeCCch
Confidence 46899999999999999999986 67765 8999999988877653 35678999999873 2389999999997
Q ss_pred hhHHHHHHHHHhcCCCC-CEEEecC-CCChhhHHHHHHHHHhcCccEec
Q 010702 84 SPVDQTIAALSEHMSPG-DCIIDGG-NEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g-~iIId~s-t~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
...+.+...+ . .| .++++-- +..+...+++.+.+++.|+.+.-
T Consensus 77 ~h~~~~~~al-~---~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v 121 (344)
T 3euw_A 77 THVDLITRAV-E---RGIPALCEKPIDLDIEMVRACKEKIGDGASKVML 121 (344)
T ss_dssp GHHHHHHHHH-H---TTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEE
T ss_pred hhHHHHHHHH-H---cCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEe
Confidence 6555444333 2 33 4666543 45567777888877777765543
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.1e-07 Score=92.94 Aligned_cols=115 Identities=14% Similarity=0.196 Sum_probs=83.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|++||||||+|.||..++..|.+. +++|. ++|+++++.+++.+.... ...+.+++++++. +++|+|++|+|+
T Consensus 1 M~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~-~~~D~V~i~tp~ 74 (344)
T 3ezy_A 1 MSLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGV-----EKAYKDPHELIED-PNVDAVLVCSST 74 (344)
T ss_dssp -CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTC-----SEEESSHHHHHHC-TTCCEEEECSCG
T ss_pred CeeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCC-----CceeCCHHHHhcC-CCCCEEEEcCCC
Confidence 356999999999999999999875 56765 899999998888765421 1468899999883 238999999999
Q ss_pred ChhHHHHHHHHHhcCCCCC-EEEecC-CCChhhHHHHHHHHHhcCccEe
Q 010702 83 GSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i 129 (503)
....+.+...+ ..|. ++++-- +..+...+++.+..++.|+.+.
T Consensus 75 ~~h~~~~~~al----~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~ 119 (344)
T 3ezy_A 75 NTHSELVIACA----KAKKHVFCEKPLSLNLADVDRMIEETKKADVILF 119 (344)
T ss_dssp GGHHHHHHHHH----HTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEE
T ss_pred cchHHHHHHHH----hcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 76544443332 2444 555532 5566778888887777776554
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.58 E-value=4e-07 Score=91.67 Aligned_cols=100 Identities=14% Similarity=0.192 Sum_probs=70.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHH---hhcc-c-CCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLD---RAHR-E-GQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~---~~~~-~-g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
+++||+|||+|.||.++|..|+.+|+ +|.+||+++++++.... .... . ...+++.+.+. +.+++ +|+||+
T Consensus 13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~---aD~VI~ 88 (328)
T 2hjr_A 13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQN---SDVVII 88 (328)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT---CSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCC---CCEEEE
Confidence 34689999999999999999999999 99999999987764221 1100 0 00146666676 44444 999999
Q ss_pred ecCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 79 LVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 79 ~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+++.+. .+++++..+.+.. ++.+++..||.
T Consensus 89 avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP 133 (328)
T 2hjr_A 89 TAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNP 133 (328)
T ss_dssp CCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred cCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 983321 2555667777765 67777777774
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-07 Score=95.61 Aligned_cols=119 Identities=14% Similarity=0.176 Sum_probs=96.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|+.+..-|.+|.+||+.+... ..+.+ ....+++++++. +|+|++.+|-....
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~--~~~~~--------~~~~~l~ell~~---sDivslh~Plt~~T 208 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRED--LKEKG--------CVYTSLDELLKE---SDVISLHVPYTKET 208 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHHTT--------CEECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred cEEEEECcchHHHHHHHhhcccCceeeecCCccchh--hhhcC--------ceecCHHHHHhh---CCEEEEcCCCChhh
Confidence 579999999999999999999999999999876532 22222 235689999988 99999999988787
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEE 138 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~ 138 (503)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+++..+.....-|.-.++
T Consensus 209 ~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EP 261 (334)
T 3kb6_A 209 HHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEE 261 (334)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHH
T ss_pred ccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCC
Confidence 7777 567778999999999999999999999999987655444444555544
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-08 Score=101.39 Aligned_cols=119 Identities=10% Similarity=0.104 Sum_probs=87.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
.++|+|||+|.||..++..|.. ...+|.+|||++++.+++.+......+..+..+.++++++++ +|+|++|+|.+
T Consensus 129 ~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~---aDiVi~aTps~ 205 (350)
T 1x7d_A 129 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKG---VDIITTVTADK 205 (350)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTT---CSEEEECCCCS
T ss_pred CCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhc---CCEEEEeccCC
Confidence 3579999999999999998764 346899999999999998875321000124567899998887 99999999986
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
. ...++. ...+++|.+|++.++..|. .+++...+..++..|+|.
T Consensus 206 ~-~~pvl~--~~~l~~G~~V~~vgs~~p~-~~El~~~~~~~a~v~vD~ 249 (350)
T 1x7d_A 206 A-YATIIT--PDMLEPGMHLNAVGGDCPG-KTELHADVLRNARVFVEY 249 (350)
T ss_dssp S-EEEEEC--GGGCCTTCEEEECSCCBTT-BEEECHHHHHTSEEEESS
T ss_pred C-CCceec--HHHcCCCCEEEECCCCCCC-ceeeCHHHHhcCcEEECC
Confidence 2 122221 2467899999999998776 445555555667788886
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=9.9e-08 Score=101.39 Aligned_cols=118 Identities=7% Similarity=0.156 Sum_probs=90.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH---HHHhCCCcchhhhHHHHHHHHhcCCCCCCCc
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELA---RIWKGGCIIRAVFLDRIKKAYQRNPNLASLV 401 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~---~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll 401 (503)
.++++++|++||+++++.|+.++|++.|++++ .++|.+++. ..|+.| .++|++++....++.+++......
T Consensus 183 ~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~-----lGl~~~~~~~~~~~w~~g-~~~S~l~~~~~~~l~~~d~~~~~~ 256 (497)
T 2p4q_A 183 AGAGHYVKMVHNGIEYGDMQLICEAYDIMKRL-----GGFTDKEISDVFAKWNNG-VLDSFLVEITRDILKFDDVDGKPL 256 (497)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCCHHHHHHHHHHHHTT-TTCBHHHHHHHHHHTCBCTTSSBG
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHhcCC-ccccHHHHHHHHHHhcCCCCCccH
Confidence 47899999999999999999999999999863 226766555 558888 579999998877766533212234
Q ss_pred chhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
++...+...+|+++ +|++..|.+.|+|+|.+.++++ +.+.++.+|..
T Consensus 257 vd~i~D~~~~KgtG--~~~~~~A~~~Gv~~P~~~~av~ar~~s~~k~~r~~ 305 (497)
T 2p4q_A 257 VEKIMDTAGQKGTG--KWTAINALDLGMPVTLIGEAVFARCLSALKNERIR 305 (497)
T ss_dssp GGGSCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHhhccchHH--HHHHHHHHHcCCCCchHHHHHHHHHhhcchhhHHH
Confidence 44344444457777 9999999999999999999987 67777776654
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.6e-07 Score=90.91 Aligned_cols=111 Identities=12% Similarity=0.132 Sum_probs=81.9
Q ss_pred CCcEEEEcccHHHHH-HHHHHHh-CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQN-LALNVAE-KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~-lA~~L~~-~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
++||||||+|.||.. ++..|.+ .++++. ++|+++++.+++.+... +..++++++++++ +|+|++|+|+
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~------~~~~~~~~~ll~~---~D~V~i~tp~ 76 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYR------IMPFDSIESLAKK---CDCIFLHSST 76 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHT------CCBCSCHHHHHTT---CSEEEECCCG
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC------CCCcCCHHHHHhc---CCEEEEeCCc
Confidence 368999999999996 8888887 467766 89999999988876542 3347899999885 9999999999
Q ss_pred ChhHHHHHHHHHhcCCCCC-EEEe-cCCCChhhHHHHHHHHHhcCccEe
Q 010702 83 GSPVDQTIAALSEHMSPGD-CIID-GGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId-~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
....+.+.. .+ ..|. ++++ -.+....+.+++.+.++++|+.+.
T Consensus 77 ~~h~~~~~~-al---~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~ 121 (308)
T 3uuw_A 77 ETHYEIIKI-LL---NLGVHVYVDKPLASTVSQGEELIELSTKKNLNLM 121 (308)
T ss_dssp GGHHHHHHH-HH---HTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEE
T ss_pred HhHHHHHHH-HH---HCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 765444433 32 2444 4544 345566778888888777776554
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.5e-07 Score=93.38 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=81.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||+|.||++++..|++.|. +|+++||++++.+++.+..... .. .. .+.+++.+.+..+|+||.++|.+..
T Consensus 142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~--~~-~~-~~~~~~~~~~~~aDivIn~t~~~~~ 217 (297)
T 2egg_A 142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDER--RS-AY-FSLAEAETRLAEYDIIINTTSVGMH 217 (297)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSS--SC-CE-ECHHHHHHTGGGCSEEEECSCTTCS
T ss_pred CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhc--cC-ce-eeHHHHHhhhccCCEEEECCCCCCC
Confidence 579999999999999999999998 8999999999998887653210 00 11 1223333333349999999997642
Q ss_pred --HHHH-HHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 86 --VDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 86 --v~~v-l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
.+.+ +. ...+.++.+|+|++.. |..|. +.+..+++|+.+++
T Consensus 218 ~~~~~~~i~--~~~l~~~~~v~D~~y~-P~~T~-ll~~A~~~G~~~v~ 261 (297)
T 2egg_A 218 PRVEVQPLS--LERLRPGVIVSDIIYN-PLETK-WLKEAKARGARVQN 261 (297)
T ss_dssp SCCSCCSSC--CTTCCTTCEEEECCCS-SSSCH-HHHHHHHTTCEEEC
T ss_pred CCCCCCCCC--HHHcCCCCEEEEcCCC-CCCCH-HHHHHHHCcCEEEC
Confidence 1100 11 1346789999999985 55563 66677788887664
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-07 Score=99.32 Aligned_cols=118 Identities=18% Similarity=0.309 Sum_probs=91.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH---HHHHhCCCcchhhhHHHHHHHHhc-CCCCCCC
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGEL---ARIWKGGCIIRAVFLDRIKKAYQR-NPNLASL 400 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i---~~iW~~Gcii~s~lL~~i~~~~~~-~~~~~~l 400 (503)
.+.++++|++||++++..++.++|++.+++++. + ++.+++ +..|+.| .+.|++++....++.+ +......
T Consensus 179 ~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~---G--l~~~~~~~l~~~w~~g-~~~s~l~~~~~~~l~~~d~~~g~~ 252 (474)
T 2iz1_A 179 NGAGHYVKMVHNGIEYGDMQLIAESYDLLKRIL---G--LSNAEIQAIFEEWNEG-ELDSYLIEITKEVLKRKDDEGEGY 252 (474)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---C--CCHHHHHHHHHHHTTT-TTCBHHHHHHHHHTTCBCSSSSSB
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-CccccHHHhhhhHhhcCCCCCChh
Confidence 478999999999999999999999999998631 2 666554 4568888 5789999988887654 3222224
Q ss_pred cchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 401 VVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 401 l~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
.+|...+...+++++ +|++..|.+.|+|+|.+.++++ +++.++.+|..
T Consensus 253 ~vd~i~D~~~~k~tG--~~~~~~A~~~gv~~P~~~~av~ar~~s~~k~~r~~ 302 (474)
T 2iz1_A 253 IVDKILDKAGNKGTG--KWTSESALDLGVPLPLITESVFARYISTYKDERVK 302 (474)
T ss_dssp GGGGBCSCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHhhcccchH--HHHHHHHHHcCCCCchHHHHHHHHHhhhhhhhhHH
Confidence 555555555667777 9999999999999999999987 67777776654
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.1e-07 Score=90.87 Aligned_cols=114 Identities=11% Similarity=0.121 Sum_probs=84.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
++||||||+|.||..++..|.+. +++|. ++|+++++.+++.+... + ..+.++++++++ +++|+|++|+|+
T Consensus 5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~i~tp~ 77 (330)
T 3e9m_A 5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELA------IPVAYGSYEELCKD-ETIDIIYIPTYN 77 (330)
T ss_dssp CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTT------CCCCBSSHHHHHHC-TTCSEEEECCCG
T ss_pred eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcC------CCceeCCHHHHhcC-CCCCEEEEcCCC
Confidence 35899999999999999999985 66765 78999999888876532 3 467899999873 238999999999
Q ss_pred ChhHHHHHHHHHhcCCCC-CEEEecC-CCChhhHHHHHHHHHhcCccEec
Q 010702 83 GSPVDQTIAALSEHMSPG-DCIIDGG-NEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g-~iIId~s-t~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
....+.+...+. .| .++++-- +....+.+++.+..+++|+.+..
T Consensus 78 ~~h~~~~~~al~----~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v 123 (330)
T 3e9m_A 78 QGHYSAAKLALS----QGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLME 123 (330)
T ss_dssp GGHHHHHHHHHH----TTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHH----CCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 765554443332 34 4666543 45667777888877787776544
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.51 E-value=6.1e-07 Score=91.10 Aligned_cols=114 Identities=16% Similarity=0.156 Sum_probs=84.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
++||||||+|.||..++..|.+. +++|. ++|+++++.+++.+.. ++..+.++++++++ +++|+|++|+|+.
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~------g~~~~~~~~~~l~~-~~~D~V~i~tp~~ 77 (354)
T 3db2_A 5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRY------NCAGDATMEALLAR-EDVEMVIITVPND 77 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHH------TCCCCSSHHHHHHC-SSCCEEEECSCTT
T ss_pred cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc------CCCCcCCHHHHhcC-CCCCEEEEeCChH
Confidence 35899999999999999999987 77854 8999999988887653 24458899999853 2489999999998
Q ss_pred hhHHHHHHHHHhcCCCCC-EEEecC-CCChhhHHHHHHHHHhcCccEec
Q 010702 84 SPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
...+.+...+ ..|. ++++-- +....+.+++.+..+++|+.+.-
T Consensus 78 ~h~~~~~~al----~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v 122 (354)
T 3db2_A 78 KHAEVIEQCA----RSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLC 122 (354)
T ss_dssp SHHHHHHHHH----HTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEE
T ss_pred HHHHHHHHHH----HcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 6655444333 2444 555432 45567788888877777775543
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=4.4e-07 Score=90.97 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHh---hccc-CCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR---AHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~---~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|||+|||+|.||.++|..|+.+|+ +|.++|+++++++.+... +... ...++.. .+. +.++ .+|+||+++
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~d~-~~~~---~aDvViiav 75 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA-GDY-ADLK---GSDVVIVAA 75 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE-CCG-GGGT---TCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe-CCH-HHhC---CCCEEEEcc
Confidence 589999999999999999999999 999999999887765432 1100 0002332 343 3334 499999999
Q ss_pred CCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
|.+. .+++++..+.+.. ++.+||..||..
T Consensus 76 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~ 119 (319)
T 1a5z_A 76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPV 119 (319)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcH
Confidence 9753 2456667777764 667777777754
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.7e-07 Score=78.17 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=64.2
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHh-ccCCCcEEEE
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVL-SIQRPRSVII 78 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~~~-~l~~~dvIil 78 (503)
|..-++++|.|+|+|.+|..++..|.+.|++|.++|+++++.+.+.+.+.. .+.. ..+.+.+.+ .+..+|+||.
T Consensus 1 m~~~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~----~~~~d~~~~~~l~~~~~~~~d~vi~ 76 (144)
T 2hmt_A 1 MGRIKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATH----AVIANATEENELLSLGIRNFEYVIV 76 (144)
T ss_dssp -----CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSE----EEECCTTCHHHHHTTTGGGCSEEEE
T ss_pred CCCCcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCE----EEEeCCCCHHHHHhcCCCCCCEEEE
Confidence 443344579999999999999999999999999999999887665443211 0111 123333322 1345999999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
+++.+......+......+.+..+|+..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 106 (144)
T 2hmt_A 77 AIGANIQASTLTTLLLKELDIPNIWVKAQN 106 (144)
T ss_dssp CCCSCHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred CCCCchHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 999763333333334444555555554443
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=8.4e-07 Score=89.70 Aligned_cols=115 Identities=12% Similarity=0.133 Sum_probs=83.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHH-h-CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVA-E-KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~-~-~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|++||||||+|.||..++..|. + .+++|. ++|+++++.+++.+.... ....++++++++++ +++|+|++|+|
T Consensus 1 M~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~----~~~~~~~~~~ll~~-~~~D~V~i~tp 75 (344)
T 3mz0_A 1 MSLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQL----NATVYPNDDSLLAD-ENVDAVLVTSW 75 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTC----CCEEESSHHHHHHC-TTCCEEEECSC
T ss_pred CeEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCC----CCeeeCCHHHHhcC-CCCCEEEECCC
Confidence 3468999999999999999998 4 467755 889999999888765320 14678999999874 34899999999
Q ss_pred CChhHHHHHHHHHhcCCCCC-EEEecC-CCChhhHHHHHHHHHhcCccE
Q 010702 82 AGSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~ 128 (503)
+....+.+... +..|. ++++-- +....+.+++.+..+++|+.+
T Consensus 76 ~~~h~~~~~~a----l~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~ 120 (344)
T 3mz0_A 76 GPAHESSVLKA----IKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRL 120 (344)
T ss_dssp GGGHHHHHHHH----HHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred chhHHHHHHHH----HHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence 97655544433 33454 455432 445667777877777777755
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-06 Score=88.82 Aligned_cols=101 Identities=11% Similarity=0.181 Sum_probs=73.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHh---hcc--cCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDR---AHR--EGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~---~~~--~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
.|||+|||+|.||.++|..|+.+|+ +|.+||+++++++..... ... ....++..+.++++.+++ +|+||++
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~---aDiVi~a 85 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG---ADCVIVT 85 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCC---CCEEEEc
Confidence 3689999999999999999999998 999999999877652211 100 001146667888876666 9999999
Q ss_pred c--CCCh------------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 V--KAGS------------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 v--p~~~------------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+ |... .+++++..+.+.. ++.+|+..||..
T Consensus 86 ~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~ 135 (331)
T 1pzg_A 86 AGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPL 135 (331)
T ss_dssp CSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred cCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCch
Confidence 8 5311 1556667777765 677888777643
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1e-06 Score=89.39 Aligned_cols=112 Identities=15% Similarity=0.106 Sum_probs=82.9
Q ss_pred CcEEEEcccHHHH-HHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQ-NLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~-~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+||||||+|.||. .++..|.+. +++|. ++|+++++.+++.+.. ++..+.+++++++. ++.|+|++|+|+.
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~~~ll~~-~~~D~V~i~tp~~ 100 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERF------GGEPVEGYPALLER-DDVDAVYVPLPAV 100 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHH------CSEEEESHHHHHTC-TTCSEEEECCCGG
T ss_pred eEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHc------CCCCcCCHHHHhcC-CCCCEEEECCCcH
Confidence 5899999999998 799999887 67765 8899999988887653 24566899999874 3489999999997
Q ss_pred hhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEe
Q 010702 84 SPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (503)
...+.+...+ ..|. ++++- -+....+.+++.+..+++|+.+.
T Consensus 101 ~h~~~~~~al----~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 144 (350)
T 3rc1_A 101 LHAEWIDRAL----RAGKHVLAEKPLTTDRPQAERLFAVARERGLLLM 144 (350)
T ss_dssp GHHHHHHHHH----HTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHH----HCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 6655444333 2444 55543 24456778888888888777654
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-07 Score=94.46 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=84.3
Q ss_pred CcEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE--KGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
++|+|||+|.||..++..|++ ...+|.+|||++++.+++.+.....+ ..+. +.++++++ + +|+|++|+|...
T Consensus 126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~-~~~~-~~~~~e~v-~---aDvVi~aTp~~~ 199 (322)
T 1omo_A 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG-ISAS-VQPAEEAS-R---CDVLVTTTPSRK 199 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT-CCEE-ECCHHHHT-S---SSEEEECCCCSS
T ss_pred CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcC-ceEE-ECCHHHHh-C---CCEEEEeeCCCC
Confidence 589999999999999999987 34689999999999999887532110 1255 78898888 7 999999999864
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
+ ++. ...+++|.+|++.++..|. ..++...+..++..|+|.+
T Consensus 200 p---v~~--~~~l~~G~~V~~ig~~~p~-~~el~~~~~~~a~v~vD~~ 241 (322)
T 1omo_A 200 P---VVK--AEWVEEGTHINAIGADGPG-KQELDVEILKKAKIVVDDL 241 (322)
T ss_dssp C---CBC--GGGCCTTCEEEECSCCSTT-CCCBCHHHHHTEEEEESCH
T ss_pred c---eec--HHHcCCCeEEEECCCCCCC-ccccCHHHHhcCeEEECCH
Confidence 2 221 2468899999999887765 3344444444556788853
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.6e-07 Score=97.95 Aligned_cols=118 Identities=8% Similarity=0.125 Sum_probs=87.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HhCCCcchhhhHHHHHHHHhcCCCCCCCc
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARI---WKGGCIIRAVFLDRIKKAYQRNPNLASLV 401 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~i---W~~Gcii~s~lL~~i~~~~~~~~~~~~ll 401 (503)
.+.++++|++||+++++.++.++|++.++++.. +++.+++.++ |+.| .+.|++++.....+.+++.....+
T Consensus 176 ~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~-----G~~~~~~~~~~~~w~~g-~~~S~l~~~~~~~l~~~d~~~~~~ 249 (482)
T 2pgd_A 176 DGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVL-----GLGHKEMAKAFEEWNKT-ELDSFLIEITASILKFQDADGKHL 249 (482)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHTTT-TTCBHHHHHHHHHHHCBCTTSSBS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CcCHHHHHHHHHHhcCC-CcCchHHHHHhHHhhccCCCCCee
Confidence 478899999999999999999999999998641 2666655444 8888 468999988777666543222344
Q ss_pred chhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
++...+...+++++ +|++..|.++|+|+|.+.+++. +.+.++.+|..
T Consensus 250 ld~i~d~~~~k~t~--~~~~~~A~~~Gv~~P~i~~av~~~~~s~~k~~r~~ 298 (482)
T 2pgd_A 250 LPKIRDSAGQKGTG--KWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQ 298 (482)
T ss_dssp GGGSCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHH
T ss_pred ecccccccccccHH--HHHHHHHHHcCCCcchHHHHHHHHhhhhhhhHHHH
Confidence 45444444456666 9999999999999999987666 55666666653
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.47 E-value=5e-07 Score=90.20 Aligned_cols=133 Identities=14% Similarity=0.147 Sum_probs=90.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
++||||||+|.||..++..|.+. +++ |.++|+++++.+++.+. +..+.+++++++. +++|+|++++|+.
T Consensus 10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~--------~~~~~~~~~~l~~-~~~D~V~i~tp~~ 80 (315)
T 3c1a_A 10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG--------CVIESDWRSVVSA-PEVEAVIIATPPA 80 (315)
T ss_dssp CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT--------CEEESSTHHHHTC-TTCCEEEEESCGG
T ss_pred cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh--------CcccCCHHHHhhC-CCCCEEEEeCChH
Confidence 46899999999999999999986 566 45899999876654432 3467889998852 2389999999987
Q ss_pred hhHHHHHHHHHhcCCCCC-EEEe-cCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHH
Q 010702 84 SPVDQTIAALSEHMSPGD-CIID-GGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDI 161 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iIId-~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~l 161 (503)
...+ ++... +..|. ++++ -.+....+.+++.+..+++|+.+..+.... . + ..+..++++
T Consensus 81 ~h~~-~~~~a---l~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r------~--------~-p~~~~~~~~ 141 (315)
T 3c1a_A 81 THAE-ITLAA---IASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQL------F--------N-PAWEALKAD 141 (315)
T ss_dssp GHHH-HHHHH---HHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECGGG------G--------C-HHHHHHHHT
T ss_pred HHHH-HHHHH---HHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeechh------c--------C-HHHHHHHHH
Confidence 5444 33333 33454 5565 244566777788887777787665433221 0 1 235667777
Q ss_pred HHHHh
Q 010702 162 LQKVA 166 (503)
Q Consensus 162 l~~ig 166 (503)
++.+|
T Consensus 142 i~~lG 146 (315)
T 3c1a_A 142 LTSIG 146 (315)
T ss_dssp HHHHC
T ss_pred HHHcC
Confidence 77777
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.9e-07 Score=98.89 Aligned_cols=117 Identities=15% Similarity=0.233 Sum_probs=90.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH---HHHHhCCCcchhhhHHHHHHHHhcCCCCCCCc
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGEL---ARIWKGGCIIRAVFLDRIKKAYQRNPNLASLV 401 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i---~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll 401 (503)
.++++++|+++|+++++.|+.++|++.+++++. + +|.+++ +..|+.| .+.|++++.....+++.+......
T Consensus 188 ~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~l---G--l~~~~~~~l~~~w~~g-~~~s~l~~~~~~~l~~~d~~~~~~ 261 (480)
T 2zyd_A 188 DGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGL---N--LTNEELAQTFTEWNNG-ELSSYLIDITKDIFTKKDEDGNYL 261 (480)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C--CCHHHHHHHHHHHHHT-TTCBHHHHHHHHHHHCBCTTSSBG
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-CcccHHHHHHHHHHhcCCCCCcch
Confidence 478999999999999999999999999999631 2 566554 5568988 578999998888876432222244
Q ss_pred chhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCc
Q 010702 402 VDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARL 449 (503)
Q Consensus 402 ~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~ 449 (503)
++...+...+++++ +|++..|.+.|+|+|.+.++++ +++.++.+|.
T Consensus 262 v~~i~D~~~~k~tG--~~~~~~A~~~gv~~Pi~~~av~ar~~s~~k~~R~ 309 (480)
T 2zyd_A 262 VDVILDEAANKGTG--KWTSQSALDLGEPLSLITESVFARYISSLKDQRV 309 (480)
T ss_dssp GGGBCCCCCCCSCT--THHHHHHHHHTCCCHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhcCchHH--HHHHHHHHHcCCCCchHHHHHHHHhhhcchhhhH
Confidence 44444445567788 9999999999999999999987 6777776664
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-06 Score=87.23 Aligned_cols=97 Identities=19% Similarity=0.146 Sum_probs=67.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHH---hhcc--cCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLD---RAHR--EGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~---~~~~--~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|||+|||+|.||.++|..|+.+ |++|.+||+++++++.... .... ....++..+.++++ +++ +|+||++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~---aDvViia 76 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TAN---SDIVIIT 76 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCC---CCEEEEe
Confidence 5899999999999999999985 7999999999987775431 1100 00013555567765 444 9999999
Q ss_pred cCCC---------------hhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
+|.+ ..++++.+.+.++. ++.+|+..+|
T Consensus 77 v~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~tN 119 (310)
T 1guz_A 77 AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSN 119 (310)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcC
Confidence 9753 12345556666664 5666666766
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.6e-06 Score=87.56 Aligned_cols=119 Identities=13% Similarity=0.180 Sum_probs=81.0
Q ss_pred CCcC-CCCcEEEEcccHHHHHHHHHHH-h-CCCc-EEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhccCCCcE
Q 010702 1 MEAS-ALSRIGLAGLAVMGQNLALNVA-E-KGFP-ISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRS 75 (503)
Q Consensus 1 M~~~-~~~~IgIIGlG~mG~~lA~~L~-~-~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~~~~l~~~dv 75 (503)
|+.. .+++|||||+|.||..++..|. + .|++ |.++|+++++.+.+.+.. ++ ..+.+++++++. +++|+
T Consensus 2 m~~~~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~------g~~~~~~~~~~~l~~-~~~D~ 74 (346)
T 3cea_A 2 MVTTRKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL------GVETTYTNYKDMIDT-ENIDA 74 (346)
T ss_dssp ---CCCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT------CCSEEESCHHHHHTT-SCCSE
T ss_pred CCCCCCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh------CCCcccCCHHHHhcC-CCCCE
Confidence 5433 3468999999999999999998 5 3677 468999999988877642 23 567899998863 23899
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhc-CccEec
Q 010702 76 VIILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQK-GLLYLG 130 (503)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~-gi~~i~ 130 (503)
|++|+|+....+.+... +..|. ++++- .+....+.+++.+..++. |+.+..
T Consensus 75 V~i~tp~~~h~~~~~~a----l~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~ 128 (346)
T 3cea_A 75 IFIVAPTPFHPEMTIYA----MNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQS 128 (346)
T ss_dssp EEECSCGGGHHHHHHHH----HHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEEC
T ss_pred EEEeCChHhHHHHHHHH----HHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEE
Confidence 99999987554444333 33465 44542 334556666777777776 766543
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=7e-08 Score=94.74 Aligned_cols=111 Identities=17% Similarity=0.076 Sum_probs=75.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|||+|.||++++..|++.|. +|+++||++++.+++.... ......++.+++.. +|+||.++|.+..
T Consensus 118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~------~~~~~~~~~~~~~~---aDiVInaTp~Gm~ 188 (277)
T 3don_A 118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNI------NKINLSHAESHLDE---FDIIINTTPAGMN 188 (277)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCC------EEECHHHHHHTGGG---CSEEEECCC----
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhc------ccccHhhHHHHhcC---CCEEEECccCCCC
Confidence 579999999999999999999999 8999999999876655321 11222333443444 9999999997621
Q ss_pred --HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 86 --VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 86 --v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
++..+ -...++++.+|+|+... |..| .+.+..+++|+..++
T Consensus 189 ~~~~~~l--~~~~l~~~~~V~D~vY~-P~~T-~ll~~A~~~G~~~~~ 231 (277)
T 3don_A 189 GNTDSVI--SLNRLASHTLVSDIVYN-PYKT-PILIEAEQRGNPIYN 231 (277)
T ss_dssp ---CCSS--CCTTCCSSCEEEESCCS-SSSC-HHHHHHHHTTCCEEC
T ss_pred CCCcCCC--CHHHcCCCCEEEEecCC-CCCC-HHHHHHHHCcCEEeC
Confidence 11111 12347789999999876 4445 466667788876544
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.4e-06 Score=86.97 Aligned_cols=111 Identities=18% Similarity=0.189 Sum_probs=79.4
Q ss_pred CcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+||||||+|.||.. ++..|.+. +++|. ++|+++++.+++.+.. ++..+++.+++.. ++|+|++++|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~------g~~~~~~~~~l~~---~~D~V~i~tp~~ 76 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW------RIPYADSLSSLAA---SCDAVFVHSSTA 76 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH------TCCBCSSHHHHHT---TCSEEEECSCTT
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc------CCCccCcHHHhhc---CCCEEEEeCCch
Confidence 58999999999997 88888764 67765 8999999988877653 2345678887733 499999999987
Q ss_pred hhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEec
Q 010702 84 SPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
...+.+... +..|. ++++- .+....+.+++.+..++.|+.+..
T Consensus 77 ~h~~~~~~a----l~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~ 121 (319)
T 1tlt_A 77 SHFDVVSTL----LNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMV 121 (319)
T ss_dssp HHHHHHHHH----HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hHHHHHHHH----HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 554433332 33455 56653 445567777888877777776543
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-06 Score=85.94 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=66.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-----cCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-----EGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-----~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
|++||+|||+|.||.++|..|+..|+ +|.++|+++++++........ ....+++.+.+. +.+++ +|+||+
T Consensus 1 M~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~---aD~Vi~ 76 (309)
T 1ur5_A 1 MRKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTAN---SDVIVV 76 (309)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTT---CSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCC---CCEEEE
Confidence 34799999999999999999999997 999999998776543221100 001145555666 43444 999999
Q ss_pred ecCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 79 LVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 79 ~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+++.+. .++++.+.+.+.. ++.+|+..||.
T Consensus 77 a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP 121 (309)
T 1ur5_A 77 TSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNP 121 (309)
T ss_dssp CCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSS
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCc
Confidence 985431 2234445665554 67777777763
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-06 Score=88.05 Aligned_cols=113 Identities=14% Similarity=0.070 Sum_probs=76.9
Q ss_pred CCcEEEEcccHHHH-HHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQ-NLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~-~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
++||||||+|.||. .++..|.+. +++|.++|+++++.+++.+... +.. +.+..+++. +++|+|++++|+
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g------~~~~~~~~~~~l~--~~~D~V~i~tp~ 73 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYR------VSATCTDYRDVLQ--YGVDAVMIHAAT 73 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTT------CCCCCSSTTGGGG--GCCSEEEECSCG
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcC------CCccccCHHHHhh--cCCCEEEEECCc
Confidence 46999999999998 599988775 6787799999999888876531 222 334444442 248999999998
Q ss_pred ChhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEec
Q 010702 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
....+.+...+ ..|+ ++++- .+....+.+++.+..++.|+.+..
T Consensus 74 ~~h~~~~~~al----~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v 119 (323)
T 1xea_A 74 DVHSTLAAFFL----HLGIPTFVDKPLAASAQECENLYELAEKHHQPLYV 119 (323)
T ss_dssp GGHHHHHHHHH----HTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hhHHHHHHHHH----HCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEE
Confidence 65444333332 3454 56653 344566777777777777776543
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=7.5e-07 Score=79.36 Aligned_cols=98 Identities=12% Similarity=0.092 Sum_probs=62.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH-HhhcccCCCCeee-eCCHHHHHh-ccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL-DRAHREGQLPLTG-HYTPRDFVL-SIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-~~~~~~g~~~i~~-~~s~~e~~~-~l~~~dvIil~vp~ 82 (503)
.++|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+. ..+.. .+.. ..+.+.+.+ .++.+|+||+++++
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~----~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~ 94 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGF----TVVGDAAEFETLKECGMEKADMVFAFTND 94 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSE----EEESCTTSHHHHHTTTGGGCSEEEECSSC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCc----EEEecCCCHHHHHHcCcccCCEEEEEeCC
Confidence 36899999999999999999999999999999998876654 22211 0111 112332222 14459999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
+. ....+..+...+.+...++-..+
T Consensus 95 ~~-~~~~~~~~~~~~~~~~~iv~~~~ 119 (155)
T 2g1u_A 95 DS-TNFFISMNARYMFNVENVIARVY 119 (155)
T ss_dssp HH-HHHHHHHHHHHTSCCSEEEEECS
T ss_pred cH-HHHHHHHHHHHHCCCCeEEEEEC
Confidence 54 44444444444333344443333
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.8e-06 Score=85.93 Aligned_cols=98 Identities=11% Similarity=0.212 Sum_probs=65.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhccc----CCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE----GQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~----g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|||+|||+|.||.++|..|+.+|+ +|.++|+++++++......... ...++.. .+. +. ++++|+||+++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~~~-~a---~~~aDvVIi~~ 75 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH-GGH-SE---LADAQVVILTA 75 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE-ECG-GG---GTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE-CCH-HH---hCCCCEEEEcC
Confidence 589999999999999999999999 9999999998765433221100 0002332 333 33 34499999999
Q ss_pred CCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+.+. .+++++..+.++ .++.+|+..||..
T Consensus 76 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~ 119 (304)
T 2v6b_A 76 GANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPV 119 (304)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSH
T ss_pred CCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 6542 235666777776 4777887777754
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.1e-06 Score=85.71 Aligned_cols=101 Identities=15% Similarity=0.235 Sum_probs=68.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHH--HH-Hhhccc-CCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDE--TL-DRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~--l~-~~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
++|||+|||+|.||..+|..|+.+|+ +|+++||++++++. +. ..+... +..++....+.+ .+. .+|+||+
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~---~aD~Vii 81 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE-ICR---DADMVVI 81 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG-GGT---TCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHH-HhC---CCCEEEE
Confidence 45799999999999999999999999 99999999877652 21 222110 001233333443 333 4999999
Q ss_pred ecCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 79 LVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 79 ~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+++.+. .+++++..+.+. .++.+|+..+|..
T Consensus 82 ~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~ 127 (319)
T 1lld_A 82 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPV 127 (319)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCch
Confidence 995431 233566777775 6788888888754
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.3e-06 Score=87.10 Aligned_cols=113 Identities=17% Similarity=0.245 Sum_probs=82.2
Q ss_pred CcEEEEcccHHHHHHHHHHH-h-CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVA-E-KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~-~-~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+||||||+|.||..++..|. + .+++|. ++|+++++.+++.+.... ....+.+++++++. ++.|+|++|+|+.
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~----~~~~~~~~~~ll~~-~~~D~V~i~tp~~ 98 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAI----EAKDYNDYHDLIND-KDVEVVIITASNE 98 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTC----CCEEESSHHHHHHC-TTCCEEEECSCGG
T ss_pred eeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCC----CCeeeCCHHHHhcC-CCCCEEEEcCCcH
Confidence 48999999999999999998 4 367755 899999999888765321 14678999999874 3489999999997
Q ss_pred hhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccE
Q 010702 84 SPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (503)
...+.+...+ ..|. ++++- -+....+.+++.+..++.|+.+
T Consensus 99 ~h~~~~~~al----~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~ 141 (357)
T 3ec7_A 99 AHADVAVAAL----NANKYVFCEKPLAVTAADCQRVIEAEQKNGKRM 141 (357)
T ss_dssp GHHHHHHHHH----HTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHH----HCCCCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence 6555444333 2444 45543 2445677778888777777754
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.38 E-value=2.6e-06 Score=85.68 Aligned_cols=115 Identities=10% Similarity=0.161 Sum_probs=83.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC---Cc-EEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhccCCCcEEEEe
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKG---FP-ISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G---~~-V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|++||||||+|.||..++..|.+.+ ++ |.++||++++.+++.+... + ..+.++++++++ ++.|+|+++
T Consensus 1 M~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~------~~~~~~~~~~ll~~-~~vD~V~i~ 73 (334)
T 3ohs_X 1 MALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHD------IPKAYGSYEELAKD-PNVEVAYVG 73 (334)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHT------CSCEESSHHHHHHC-TTCCEEEEC
T ss_pred CccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEEC
Confidence 3569999999999999999998764 34 5688999999988877542 3 468899999974 348999999
Q ss_pred cCCChhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEec
Q 010702 80 VKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+|+....+.+...+ ..|+ ++++- -+....+.+++.+..+++|+.+..
T Consensus 74 tp~~~H~~~~~~al----~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v 122 (334)
T 3ohs_X 74 TQHPQHKAAVMLCL----AAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLME 122 (334)
T ss_dssp CCGGGHHHHHHHHH----HTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcHHHHHHHHHHH----hcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 99976655444333 3454 45542 244567777888877777765543
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.37 E-value=7.9e-07 Score=93.30 Aligned_cols=98 Identities=10% Similarity=0.017 Sum_probs=77.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|+.+...|.+|++||+++.+..+....+ +. ..++++++.. +|+|++++...
T Consensus 258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g-------~~-~~~l~ell~~---aDiVi~~~~t~--- 323 (479)
T 1v8b_A 258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEG-------FN-VVTLDEIVDK---GDFFITCTGNV--- 323 (479)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTT-------CE-ECCHHHHTTT---CSEEEECCSSS---
T ss_pred CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcC-------CE-ecCHHHHHhc---CCEEEECCChh---
Confidence 5799999999999999999999999999999998754444332 33 3588888876 99999996433
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCCh-hhHHHHHH
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWY-LNTERRIH 119 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~-~~t~~~~~ 119 (503)
.++ .+.+..+++|.+|||++.... -+...+.+
T Consensus 324 -~lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 324 -DVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp -SSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred -hhcCHHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 233 456677999999999999987 47777666
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.8e-06 Score=85.20 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=68.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-----cCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-----EGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-----~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
++||+|||+|.||.++|..|+..|+ +|.++|+++++++........ ....+++.+.+. +.+++ +|+||++
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~---aD~Vi~a 79 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAG---ADVVIVT 79 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC---CCEEEEe
Confidence 3689999999999999999999998 999999999876543221100 001146665676 44444 9999999
Q ss_pred c--CCC------------------hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 80 V--KAG------------------SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 80 v--p~~------------------~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+ |.. ..++++...+.+.. ++.+||..||.
T Consensus 80 ~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP 128 (322)
T 1t2d_A 80 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNP 128 (322)
T ss_dssp CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSS
T ss_pred CCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 8 421 13555667777765 67777777764
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.4e-06 Score=84.58 Aligned_cols=115 Identities=10% Similarity=0.099 Sum_probs=82.0
Q ss_pred CcEEEEcccHHHHHH-HHHHHhCCCcEE-EEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQNL-ALNVAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~l-A~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+||||||+|.||..+ +..|.+.|++|. ++|+++++.+++.+... + ..+.+++++++. +++|+|++++|+.
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g------~~~~~~~~~~~l~~-~~~D~V~i~tp~~ 73 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENG------IGKSVTSVEELVGD-PDVDAVYVSTTNE 73 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTT------CSCCBSCHHHHHTC-TTCCEEEECSCGG
T ss_pred CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEEeCChh
Confidence 489999999999998 888888778765 89999999888776531 2 357889998863 2489999999986
Q ss_pred hhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEeccc
Q 010702 84 SPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
...+ ++... +..|+ ++++. .+....+.+++.+..+++|+.+..+.
T Consensus 74 ~h~~-~~~~a---l~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~ 120 (332)
T 2glx_A 74 LHRE-QTLAA---IRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNH 120 (332)
T ss_dssp GHHH-HHHHH---HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECC
T ss_pred HhHH-HHHHH---HHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEee
Confidence 5444 33333 33565 55543 34456677778777777787665543
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.35 E-value=5.3e-07 Score=87.35 Aligned_cols=105 Identities=13% Similarity=0.087 Sum_probs=74.2
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
+|+|||+|.||++++..|++.|. +|+++||++++.+++.+.. +.....++.+.+.. +|+||.++|.+-.-
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~------~~~~~~~~~~~~~~---aDiVInatp~gm~p 180 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPV------KIFSLDQLDEVVKK---AKSLFNTTSVGMKG 180 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSC------EEEEGGGHHHHHHT---CSEEEECSSTTTTS
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc------ccCCHHHHHhhhcC---CCEEEECCCCCCCC
Confidence 79999999999999999999998 8999999999887765432 12334566676666 99999999864210
Q ss_pred -HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 -DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 -~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
...+. ...+.++.+|+|.... + | .+.+..+++|+.
T Consensus 181 ~~~~i~--~~~l~~~~~V~Divy~-~--T-~ll~~A~~~G~~ 216 (253)
T 3u62_A 181 EELPVS--DDSLKNLSLVYDVIYF-D--T-PLVVKARKLGVK 216 (253)
T ss_dssp CCCSCC--HHHHTTCSEEEECSSS-C--C-HHHHHHHHHTCS
T ss_pred CCCCCC--HHHhCcCCEEEEeeCC-C--c-HHHHHHHHCCCc
Confidence 01111 1235688999999877 2 2 233444556765
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.1e-06 Score=79.73 Aligned_cols=96 Identities=14% Similarity=0.146 Sum_probs=64.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHh-ccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVL-SIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~~~-~l~~~dvIil~vp~~~ 84 (503)
|+|.|+|+|.+|..+|..|.+.|++|.++|+++++++.+.+..... -+... .+.+.+.+ .++.+|+||++++++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~---~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d- 76 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKAT---IIHGDGSHKEILRDAEVSKNDVVVILTPRD- 76 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSE---EEESCTTSHHHHHHHTCCTTCEEEECCSCH-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCe---EEEcCCCCHHHHHhcCcccCCEEEEecCCc-
Confidence 5899999999999999999999999999999999988876532110 01111 22222222 356799999999985
Q ss_pred hHHHHHHHHHhc-CCCCCEEEec
Q 010702 85 PVDQTIAALSEH-MSPGDCIIDG 106 (503)
Q Consensus 85 ~v~~vl~~l~~~-l~~g~iIId~ 106 (503)
.....+..+... .+...+|.-.
T Consensus 77 ~~n~~~~~~a~~~~~~~~iia~~ 99 (218)
T 3l4b_C 77 EVNLFIAQLVMKDFGVKRVVSLV 99 (218)
T ss_dssp HHHHHHHHHHHHTSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCeEEEEE
Confidence 444444444444 3334444433
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-06 Score=92.66 Aligned_cols=117 Identities=17% Similarity=0.235 Sum_probs=87.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH---HHHh-CCCcchhhhHHHHHHHHhcCCCCCCC
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELA---RIWK-GGCIIRAVFLDRIKKAYQRNPNLASL 400 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~---~iW~-~Gcii~s~lL~~i~~~~~~~~~~~~l 400 (503)
.+.++++|++||++++..++.++|++.++++. + ++.+++. ..|+ .| ...|++++.....+.+.+..+..
T Consensus 178 ~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~----G--~~~~~~~~l~~~w~~~g-~~~s~l~~~~~~~l~~~d~~G~~ 250 (478)
T 1pgj_A 178 GGAGSCVKMYHNSGEYAILQIWGEVFDILRAM----G--LNNDEVAAVLEDWKSKN-FLKSYMLDISIAAARAKDKDGSY 250 (478)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----T--CCHHHHHHHHHHHHHTS-TTCBHHHHHHHHHHHCBCTTSSB
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc----C--CCHHHHHHHHHHhccCC-CcCchHHHhhchhhhcCCCCChh
Confidence 47889999999999999999999999999843 3 6665544 4577 77 67899998887777543211113
Q ss_pred cchhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 401 VVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 401 l~~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
.+|...+...+++++ +|++..|.++|+|+|.+.++++ +++..+.+|.-
T Consensus 251 ~ld~i~D~~~~kgtg--~~~~~~A~~~Gv~~Pi~~~av~~r~ls~~~~~r~~ 300 (478)
T 1pgj_A 251 LTEHVMDRIGSKGTG--LWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQA 300 (478)
T ss_dssp GGGGBCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHhcCccHH--HHHHHHHHHhCCCChHHHHHHHHHHHhCCCCHHHH
Confidence 444333333446666 9999999999999999999987 67777766643
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3.1e-07 Score=80.85 Aligned_cols=105 Identities=10% Similarity=0.062 Sum_probs=80.4
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHH-HHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKV-DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.+|+|||+ |.+|..++++|.+.||+ +|++||.+. +++ . ++..+.|++|+.+. +|++++++|
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~~i------~---G~~~~~sl~el~~~---vDlavi~vp 79 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGEEL------F---GEEAVASLLDLKEP---VDILDVFRP 79 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTSEE------T---TEECBSSGGGCCSC---CSEEEECSC
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccCcC------C---CEEecCCHHHCCCC---CCEEEEEeC
Confidence 47999999 89999999999999997 788888741 111 1 35677889888765 899999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
+ ..+.++++++...-. +.+++..++. .+++.+.+++.|+++++.
T Consensus 80 ~-~~~~~v~~~~~~~gi-~~i~~~~g~~----~~~~~~~a~~~Gir~vgp 123 (140)
T 1iuk_A 80 P-SALMDHLPEVLALRP-GLVWLQSGIR----HPEFEKALKEAGIPVVAD 123 (140)
T ss_dssp H-HHHTTTHHHHHHHCC-SCEEECTTCC----CHHHHHHHHHTTCCEEES
T ss_pred H-HHHHHHHHHHHHcCC-CEEEEcCCcC----HHHHHHHHHHcCCEEEcC
Confidence 9 578888887776443 4577765553 356777778889999973
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=6.7e-07 Score=94.17 Aligned_cols=100 Identities=10% Similarity=-0.046 Sum_probs=76.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.||+.+|+.|...|.+|++|||++.+..+....+ +. ..++++++.. +|+|++++....
T Consensus 278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G-------~~-~~~l~ell~~---aDiVi~~~~t~~-- 344 (494)
T 3d64_A 278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEG-------YR-VVTMEYAADK---ADIFVTATGNYH-- 344 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTT-------CE-ECCHHHHTTT---CSEEEECSSSSC--
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcC-------CE-eCCHHHHHhc---CCEEEECCCccc--
Confidence 5799999999999999999999999999999998653333322 23 3578888876 999999985432
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChh-hHHHHHHHHH
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYL-NTERRIHEAS 122 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~-~t~~~~~~l~ 122 (503)
++ .+.+..+++|.+|||++..... +...+ +.++
T Consensus 345 --lI~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~ 379 (494)
T 3d64_A 345 --VINHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQ 379 (494)
T ss_dssp --SBCHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSE
T ss_pred --ccCHHHHhhCCCCcEEEEcCCCcchhchHHH-Hhhh
Confidence 33 4566778999999999998763 55555 4443
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.4e-06 Score=85.03 Aligned_cols=111 Identities=13% Similarity=0.145 Sum_probs=79.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.||||||+|.||..++..|.+. +++|. ++|+++++.+...+. ++..+.++++++++ ++.|+|++|+|+..
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~-------g~~~~~~~~~ll~~-~~~D~V~i~tp~~~ 77 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQK-------GLKIYESYEAVLAD-EKVDAVLIATPNDS 77 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTT-------TCCBCSCHHHHHHC-TTCCEEEECSCGGG
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhc-------CCceeCCHHHHhcC-CCCCEEEEcCCcHH
Confidence 5899999999999999999887 67765 789999987643222 35678899999873 23899999999976
Q ss_pred hHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEe
Q 010702 85 PVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (503)
..+.+...+ ..|+ ++++- -+....+.+++.+..+++|+.+.
T Consensus 78 h~~~~~~al----~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 120 (359)
T 3e18_A 78 HKELAISAL----EAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFM 120 (359)
T ss_dssp HHHHHHHHH----HTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHH----HCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 555444333 3455 44442 23456777788887777776553
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.27 E-value=8.1e-07 Score=88.75 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=79.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
.+|+|||+|.||..++..|.+. ..+|.+|||+ +.+++.+.... .| ..+..+ ++++++.+ +|+|++|+|..
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g-~~~~~~-~~~eav~~---aDIVi~aT~s~ 194 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCG-VPARMA-APADIAAQ---ADIVVTATRST 194 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHT-SCEEEC-CHHHHHHH---CSEEEECCCCS
T ss_pred cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcC-CeEEEe-CHHHHHhh---CCEEEEccCCC
Confidence 5799999999999999999863 3579999999 55555543110 00 134566 99999988 99999999986
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcC-ccEecc
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKG-LLYLGM 131 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~g-i~~i~~ 131 (503)
.+ ++. .+.+++|.+|++.++..|.. +++...+-.+. ..|+|.
T Consensus 195 ~p---vl~--~~~l~~G~~V~~vGs~~p~~-~El~~~~~~~a~~v~vD~ 237 (313)
T 3hdj_A 195 TP---LFA--GQALRAGAFVGAIGSSLPHT-RELDDEALRRARAVVVEW 237 (313)
T ss_dssp SC---SSC--GGGCCTTCEEEECCCSSTTC-CCCCHHHHHHCSEEEESC
T ss_pred Cc---ccC--HHHcCCCcEEEECCCCCCch-hhcCHHHHhcCCEEEECC
Confidence 42 222 35688999999999987753 34433333333 457774
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.5e-07 Score=88.40 Aligned_cols=109 Identities=15% Similarity=0.087 Sum_probs=76.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
+++.|||+|.||++++..|++.|.+|+++||++++.+++.+.+ +... +++++. .+|+||.++|.+...
T Consensus 119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~-------~~~~-~~~~l~----~~DiVInaTp~Gm~~ 186 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLG-------CDCF-MEPPKS----AFDLIINATSASLHN 186 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHT-------CEEE-SSCCSS----CCSEEEECCTTCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC-------CeEe-cHHHhc----cCCEEEEcccCCCCC
Confidence 5799999999999999999999999999999999998887322 2222 233322 399999999976321
Q ss_pred HHHH--HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 87 DQTI--AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 87 ~~vl--~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+..+ +.+...++++.+|+|+... | .|. +.+..+++|+..++
T Consensus 187 ~~~l~~~~l~~~l~~~~~v~D~vY~-P-~T~-ll~~A~~~G~~~~~ 229 (269)
T 3phh_A 187 ELPLNKEVLKGYFKEGKLAYDLAYG-F-LTP-FLSLAKELKTPFQD 229 (269)
T ss_dssp SCSSCHHHHHHHHHHCSEEEESCCS-S-CCH-HHHHHHHTTCCEEC
T ss_pred CCCCChHHHHhhCCCCCEEEEeCCC-C-chH-HHHHHHHCcCEEEC
Confidence 1111 1222235578999999876 4 554 66667778876554
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.7e-06 Score=86.83 Aligned_cols=122 Identities=15% Similarity=0.116 Sum_probs=85.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
+|||.|||+|.+|+.+|..|++ .++|.+.|++.++++.+.+... .+.. ..+.+++.+.++++|+||.|+|..
T Consensus 16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~-----~~~~d~~d~~~l~~~~~~~DvVi~~~p~~- 88 (365)
T 3abi_A 16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFAT-----PLKVDASNFDKLVEVMKEFELVIGALPGF- 88 (365)
T ss_dssp CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSE-----EEECCTTCHHHHHHHHTTCSEEEECCCGG-
T ss_pred ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCC-----cEEEecCCHHHHHHHHhCCCEEEEecCCc-
Confidence 4699999999999999999875 5899999999998887654321 1111 235555555556699999999985
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe-cccCCCChh
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL-GMGVSGGEE 138 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i-~~pvsgg~~ 138 (503)
.-..+++.. +..|.-++|.|-.. ....++.+..++.|+.++ ++++..|..
T Consensus 89 ~~~~v~~~~---~~~g~~yvD~s~~~-~~~~~l~~~a~~~g~~~i~~~G~~PG~~ 139 (365)
T 3abi_A 89 LGFKSIKAA---IKSKVDMVDVSFMP-ENPLELRDEAEKAQVTIVFDAGFAPGLS 139 (365)
T ss_dssp GHHHHHHHH---HHHTCEEEECCCCS-SCGGGGHHHHHHTTCEEECCCBTTTBHH
T ss_pred ccchHHHHH---HhcCcceEeeeccc-hhhhhhhhhhccCCceeeecCCCCCchH
Confidence 334444443 34688999987543 455566667777787665 467766644
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.25 E-value=5.1e-06 Score=83.55 Aligned_cols=114 Identities=9% Similarity=0.089 Sum_probs=83.6
Q ss_pred CCcEEEEcccHHHH-HHHHHHHhCCCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQ-NLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~-~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
++||||||+|.||. .++..|...|++| .++|+++++.+++.+... ....+.++++++++ ++.|+|++|+|+.
T Consensus 4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~-----~~~~~~~~~~ll~~-~~~D~V~i~tp~~ 77 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFP-----SVPFAASAEQLITD-ASIDLIACAVIPC 77 (336)
T ss_dssp CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHST-----TCCBCSCHHHHHTC-TTCCEEEECSCGG
T ss_pred ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcC-----CCcccCCHHHHhhC-CCCCEEEEeCChh
Confidence 46899999999996 6888887788885 689999999888876531 23567899999874 2389999999997
Q ss_pred hhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEe
Q 010702 84 SPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (503)
...+.++..+ ..|+ ++++- .+....+.+++.+..++.|+.+.
T Consensus 78 ~h~~~~~~al----~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 121 (336)
T 2p2s_A 78 DRAELALRTL----DAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFA 121 (336)
T ss_dssp GHHHHHHHHH----HTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEE
T ss_pred hHHHHHHHHH----HCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 6655444433 3455 56653 44556777788877777776554
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=5.8e-06 Score=82.66 Aligned_cols=106 Identities=13% Similarity=0.096 Sum_probs=67.6
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccC-CC--CeeeeCCHHHHHhccCCCcE
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREG-QL--PLTGHYTPRDFVLSIQRPRS 75 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g-~~--~i~~~~s~~e~~~~l~~~dv 75 (503)
|+..+++||+|||+|.||.++|..|+..|. +|.++|+++++.+.......... .. .++...+..+.++ ++|+
T Consensus 1 m~~~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~---~aDv 77 (316)
T 1ldn_A 1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCR---DADL 77 (316)
T ss_dssp CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTT---TCSE
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhC---CCCE
Confidence 666566799999999999999999998875 79999999876553321110000 00 1222223333334 4999
Q ss_pred EEEecCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 76 VIILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 76 Iil~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
||++++.+. .++++++.+.++. ++.+++..||..
T Consensus 78 Viia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tNPv 126 (316)
T 1ldn_A 78 VVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPV 126 (316)
T ss_dssp EEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSH
T ss_pred EEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCCch
Confidence 999976542 2344445666654 666777777743
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-06 Score=89.17 Aligned_cols=91 Identities=10% Similarity=0.026 Sum_probs=71.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|+|||+|.+|..+|+.|...|.+|.++|+++.+.......+ +. ..++++++.. +|+|+++..+...+
T Consensus 212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G-------~~-~~sL~eal~~---ADVVilt~gt~~iI 280 (436)
T 3h9u_A 212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEG-------YQ-VLLVEDVVEE---AHIFVTTTGNDDII 280 (436)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHTTT---CSEEEECSSCSCSB
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhC-------Ce-ecCHHHHHhh---CCEEEECCCCcCcc
Confidence 5799999999999999999999999999999997765554443 22 3588998887 99999876543222
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
. .+.+..+++|.+||+.+...+
T Consensus 281 ~---~e~l~~MK~gAIVINvgRg~v 302 (436)
T 3h9u_A 281 T---SEHFPRMRDDAIVCNIGHFDT 302 (436)
T ss_dssp C---TTTGGGCCTTEEEEECSSSGG
T ss_pred C---HHHHhhcCCCcEEEEeCCCCC
Confidence 1 345677899999999998765
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.8e-06 Score=85.46 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=78.9
Q ss_pred CcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+||||||+|.||.. ++..|.+. +++|. ++|+++++.+.+.+... ....+.++++++++ .+.|+|++|+|+.
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp~~ 79 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFIS-----DIPVLDNVPAMLNQ-VPLDAVVMAGPPQ 79 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSC-----SCCEESSHHHHHHH-SCCSEEEECSCHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcC-----CCcccCCHHHHhcC-CCCCEEEEcCCcH
Confidence 58999999999985 89999876 67765 89999999887766421 24578899999985 2359999999986
Q ss_pred hhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccE
Q 010702 84 SPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (503)
...+-+... +..|+ ++++- -+....+.+++.+..+++|+.+
T Consensus 80 ~H~~~~~~a----l~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~ 122 (359)
T 3m2t_A 80 LHFEMGLLA----MSKGVNVFVEKPPCATLEELETLIDAARRSDVVS 122 (359)
T ss_dssp HHHHHHHHH----HHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHH----HHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence 554433333 33454 44442 2345567777777777777644
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-06 Score=89.29 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=68.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCC-----eeee----------CCHHHHHhccC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLP-----LTGH----------YTPRDFVLSIQ 71 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~-----i~~~----------~s~~e~~~~l~ 71 (503)
.+|+|||+|.||..+|+.+...|.+|++|||++++.+.+.+.|...-.+. .... .....+.+.++
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~ 264 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAIT 264 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHT
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHh
Confidence 58999999999999999999999999999999999888776543110000 0000 01122333334
Q ss_pred CCcEEEEec--CCChhHHHHH-HHHHhcCCCCCEEEecCC
Q 010702 72 RPRSVIILV--KAGSPVDQTI-AALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 72 ~~dvIil~v--p~~~~v~~vl-~~l~~~l~~g~iIId~st 108 (503)
.+|+||.++ |... ...++ ++.+..+++|.+|||++.
T Consensus 265 ~aDIVI~tv~iPg~~-ap~Lvt~emv~~MkpGsVIVDvA~ 303 (381)
T 3p2y_A 265 KFDIVITTALVPGRP-APRLVTAAAATGMQPGSVVVDLAG 303 (381)
T ss_dssp TCSEEEECCCCTTSC-CCCCBCHHHHHTSCTTCEEEETTG
T ss_pred cCCEEEECCCCCCcc-cceeecHHHHhcCCCCcEEEEEeC
Confidence 599999986 4311 11122 677778899999999974
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1e-06 Score=77.90 Aligned_cols=105 Identities=14% Similarity=0.093 Sum_probs=78.4
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
.+|+|||+ |.+|..++.+|.+.||+ +|++++.. +++ . ++..+.|++|+.+. +|++++++|+
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~i------~---G~~~y~sl~~l~~~---vDlvvi~vp~ 87 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EEV------L---GRKCYPSVLDIPDK---IEVVDLFVKP 87 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SEE------T---TEECBSSGGGCSSC---CSEEEECSCH
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-CeE------C---CeeccCCHHHcCCC---CCEEEEEeCH
Confidence 47999999 79999999999999997 67777653 111 1 36677889988765 8999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
..+.++++++...- .+.+++..++. .+++.+.+++.|+++++.-
T Consensus 88 -~~~~~vv~~~~~~g-i~~i~~~~g~~----~~~l~~~a~~~Gi~vvGpn 131 (144)
T 2d59_A 88 -KLTMEYVEQAIKKG-AKVVWFQYNTY----NREASKKADEAGLIIVANR 131 (144)
T ss_dssp -HHHHHHHHHHHHHT-CSEEEECTTCC----CHHHHHHHHHTTCEEEESC
T ss_pred -HHHHHHHHHHHHcC-CCEEEECCCch----HHHHHHHHHHcCCEEEcCC
Confidence 57888888777643 33566554432 4567777888899988643
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.1e-06 Score=84.95 Aligned_cols=114 Identities=15% Similarity=0.127 Sum_probs=79.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcE-EEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-FPI-SVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~~V-~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
++||||||+|.||..++..|.+.+ ++| .++|+++++.+++.+.. ++ ..+.++++++++ +++|+|++++|+
T Consensus 5 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~------~~~~~~~~~~~ll~~-~~~D~V~i~tp~ 77 (329)
T 3evn_A 5 KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKY------HLPKAYDKLEDMLAD-ESIDVIYVATIN 77 (329)
T ss_dssp CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CC------CCSCEESCHHHHHTC-TTCCEEEECSCG
T ss_pred ceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHc------CCCcccCCHHHHhcC-CCCCEEEECCCc
Confidence 358999999999999999998764 454 48899999887776543 23 367899999973 238999999999
Q ss_pred ChhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEec
Q 010702 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
....+.+...+ ..|. ++++- -+....+.+++.+..+++|+.+..
T Consensus 78 ~~h~~~~~~al----~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v 123 (329)
T 3evn_A 78 QDHYKVAKAAL----LAGKHVLVEKPFTLTYDQANELFALAESCNLFLME 123 (329)
T ss_dssp GGHHHHHHHHH----HTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHH----HCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 76554443333 3454 44443 244566777788877887776554
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.8e-06 Score=88.60 Aligned_cols=98 Identities=12% Similarity=0.111 Sum_probs=69.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe---------e-e------------eCCHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL---------T-G------------HYTPR 64 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i---------~-~------------~~s~~ 64 (503)
.+|+|||+|.||..+|+.+...|.+|++||+++++.+.+.+.+...-...+ . . ..+++
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~ 270 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVA 270 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHH
Confidence 589999999999999999999999999999999988877664431000000 0 0 11345
Q ss_pred HHHhccCCCcEEEEec--CCChhHHHH-HHHHHhcCCCCCEEEecCC
Q 010702 65 DFVLSIQRPRSVIILV--KAGSPVDQT-IAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 65 e~~~~l~~~dvIil~v--p~~~~v~~v-l~~l~~~l~~g~iIId~st 108 (503)
+++.. +|+||.++ |.... ..+ -++.+..+++|.+|||++.
T Consensus 271 e~l~~---aDVVI~tvlipg~~a-p~Lvt~emv~~Mk~GsVIVDvA~ 313 (405)
T 4dio_A 271 EHIAK---QDIVITTALIPGRPA-PRLVTREMLDSMKPGSVVVDLAV 313 (405)
T ss_dssp HHHHT---CSEEEECCCCSSSCC-CCCBCHHHHTTSCTTCEEEETTG
T ss_pred HHhcC---CCEEEECCcCCCCCC-CEEecHHHHhcCCCCCEEEEEeC
Confidence 55555 99999986 33111 111 2677788999999999974
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-05 Score=80.91 Aligned_cols=117 Identities=14% Similarity=0.044 Sum_probs=81.8
Q ss_pred cCCCCcEEEEccc-HHHHHHHHHHHhC--CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 3 ASALSRIGLAGLA-VMGQNLALNVAEK--GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 3 ~~~~~~IgIIGlG-~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
.+.+.||||||+| .||...+..|.+. +++| .++|+++++.+++.+.... ...++++++++++ ++.|+|++
T Consensus 15 ~~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~-----~~~~~~~~~ll~~-~~vD~V~i 88 (340)
T 1zh8_A 15 PLRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN-----PAVFDSYEELLES-GLVDAVDL 88 (340)
T ss_dssp -CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS-----CEEESCHHHHHHS-SCCSEEEE
T ss_pred CCCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCC-----CcccCCHHHHhcC-CCCCEEEE
Confidence 3345689999999 8999999999886 4565 6899999999888765321 2578999999874 34899999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEe
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (503)
++|+....+-+...+ ..|. ++++- -+....+.+++.+..++.|+.+.
T Consensus 89 ~tp~~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 137 (340)
T 1zh8_A 89 TLPVELNLPFIEKAL----RKGVHVICEKPISTDVETGKKVVELSEKSEKTVY 137 (340)
T ss_dssp CCCGGGHHHHHHHHH----HTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEE
T ss_pred eCCchHHHHHHHHHH----HCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 999876544443333 3454 44542 12355667777777777776544
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.3e-05 Score=81.01 Aligned_cols=114 Identities=13% Similarity=0.187 Sum_probs=80.1
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|+||||||+|.||.. ++..+.+. +.+|. ++|+++++++++.++... ...++|+++++++ ++.|+|++|+|+
T Consensus 23 mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~-----~~~y~d~~ell~~-~~iDaV~I~tP~ 96 (350)
T 4had_A 23 MLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSV-----PHAFGSYEEMLAS-DVIDAVYIPLPT 96 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTC-----SEEESSHHHHHHC-SSCSEEEECSCG
T ss_pred ccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCC-----CeeeCCHHHHhcC-CCCCEEEEeCCC
Confidence 569999999999976 46666665 56654 889999999988876421 1568999999975 347999999999
Q ss_pred ChhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEe
Q 010702 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (503)
....+-++..+. .|+ ++++- -+....+.+++.+..++.|+.+.
T Consensus 97 ~~H~~~~~~al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 141 (350)
T 4had_A 97 SQHIEWSIKAAD----AGKHVVCEKPLALKAGDIDAVIAARDRNKVVVT 141 (350)
T ss_dssp GGHHHHHHHHHH----TTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEE
T ss_pred chhHHHHHHHHh----cCCEEEEeCCcccchhhHHHHHHHHHHcCCcee
Confidence 876665554443 344 44441 12234677778777777776543
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=9.1e-06 Score=81.30 Aligned_cols=105 Identities=12% Similarity=0.111 Sum_probs=65.5
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHH---hhcccCCCCeeeeCCHHHHHhccCCCcE
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLD---RAHREGQLPLTGHYTPRDFVLSIQRPRS 75 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~---~~~~~g~~~i~~~~s~~e~~~~l~~~dv 75 (503)
|...+++||+|||+|.+|.+++..|+..|. +|.++|+++++++.... ......+..+....+..+.+++ +|+
T Consensus 1 m~~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~---aDv 77 (317)
T 3d0o_A 1 MNKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHD---ADL 77 (317)
T ss_dssp ---CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTT---CSE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCC---CCE
Confidence 444445799999999999999999998885 89999999876653221 1110000012222233444444 999
Q ss_pred EEEecCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 76 VIILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 76 Iil~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
||++++.+. .++++.+.+.++ .++.+|+..||-
T Consensus 78 Vvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP 125 (317)
T 3d0o_A 78 VVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNP 125 (317)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred EEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCc
Confidence 999986542 234444566665 577777777654
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-05 Score=81.98 Aligned_cols=118 Identities=12% Similarity=0.119 Sum_probs=82.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+++|||||+|.||..++..|.+. ++++ .++|+++++.+.+.+..... .....+.++++++++ +++|+|++++|+.
T Consensus 6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~--~~~~~~~~~~~ll~~-~~~D~V~i~tp~~ 82 (362)
T 1ydw_A 6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYP--ESTKIHGSYESLLED-PEIDALYVPLPTS 82 (362)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCC--TTCEEESSHHHHHHC-TTCCEEEECCCGG
T ss_pred ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCC--CCCeeeCCHHHHhcC-CCCCEEEEcCChH
Confidence 46899999999999999999875 5665 58999999988877653210 013567899999863 2389999999987
Q ss_pred hhHHHHHHHHHhcCCCCCEE-Eec-CCCChhhHHHHHHHHHhcCccEec
Q 010702 84 SPVDQTIAALSEHMSPGDCI-IDG-GNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iI-Id~-st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
...+ ++.. .+..|..| ++- .+......+++.+..+++|+.+..
T Consensus 83 ~h~~-~~~~---al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~ 127 (362)
T 1ydw_A 83 LHVE-WAIK---AAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMD 127 (362)
T ss_dssp GHHH-HHHH---HHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHH-HHHH---HHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 5443 3332 34456644 442 244556777777777777876654
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.5e-06 Score=85.14 Aligned_cols=114 Identities=11% Similarity=0.147 Sum_probs=77.1
Q ss_pred CCCcEEEEcccHHHHHHHHH-H-Hh-CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 5 ALSRIGLAGLAVMGQNLALN-V-AE-KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~-L-~~-~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|++||||||+|.||..+... + .. .+++|. ++|+++++.+.+.+.. ++..++|++++++. ++.|+|++|+
T Consensus 1 m~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~i~t 73 (345)
T 3f4l_A 1 MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYS------HIHFTSDLDEVLND-PDVKLVVVCT 73 (345)
T ss_dssp -CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGT------TCEEESCTHHHHTC-TTEEEEEECS
T ss_pred CceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcC------CCceECCHHHHhcC-CCCCEEEEcC
Confidence 35699999999999974444 4 32 367766 8999988753322211 35678999999874 3479999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecC--CCChhhHHHHHHHHHhcCccEe
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGG--NEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~s--t~~~~~t~~~~~~l~~~gi~~i 129 (503)
|+....+.+... +..|..|+.-- +....+.+++.+.++++|+.+.
T Consensus 74 p~~~h~~~~~~a----l~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 120 (345)
T 3f4l_A 74 HADSHFEYAKRA----LEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVT 120 (345)
T ss_dssp CGGGHHHHHHHH----HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred ChHHHHHHHHHH----HHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 997665544433 33566665543 4456677788887777777654
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.4e-05 Score=81.39 Aligned_cols=111 Identities=20% Similarity=0.188 Sum_probs=77.9
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
+.||||||+|.||.. .+..+.+. +++|. ++|+++++.++ ... ....+.++++++++ ++.|+|++|+|+
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~--~~~------~~~~~~~~~~ll~~-~~~D~V~i~tp~ 77 (364)
T 3e82_A 7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR--DLP------DVTVIASPEAAVQH-PDVDLVVIASPN 77 (364)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH--HCT------TSEEESCHHHHHTC-TTCSEEEECSCG
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh--hCC------CCcEECCHHHHhcC-CCCCEEEEeCCh
Confidence 358999999999997 67777665 67764 88999987542 111 35678999999983 348999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecC--CCChhhHHHHHHHHHhcCccEe
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGG--NEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~s--t~~~~~t~~~~~~l~~~gi~~i 129 (503)
....+.+... +..|+-|+.-- +....+.+++.+.+++.|+.+.
T Consensus 78 ~~H~~~~~~a----l~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~ 122 (364)
T 3e82_A 78 ATHAPLARLA----LNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLS 122 (364)
T ss_dssp GGHHHHHHHH----HHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHH----HHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 7665544433 33555555443 4456677777777777776554
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.2e-05 Score=79.46 Aligned_cols=98 Identities=11% Similarity=0.113 Sum_probs=66.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHH----HHHhhccc-CCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDE----TLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|||+|||+|.||.++|..|+.+|+ +|.+||+++++++. +....... ...++....+ .+.+++ +|+||++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~---aDiVVia 76 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKG---SEIIVVT 76 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCC---CCEEEEC
Confidence 589999999999999999999998 89999999988652 11111000 0013555556 555555 9999999
Q ss_pred cCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
...+. .++++...+.+. .++.+|+..||-
T Consensus 77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvsNP 120 (294)
T 1oju_A 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNP 120 (294)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSS
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCc
Confidence 75431 133344555555 577888888864
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.5e-05 Score=81.87 Aligned_cols=114 Identities=13% Similarity=0.094 Sum_probs=82.7
Q ss_pred CCcEEEEccc-HHHHHHHHHHHhC-CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLA-VMGQNLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG-~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
++||||||+| .||..++..|.+. +++| .++|+++++.+++.+.. ++..+.|+++++++ ++.|+|++++|+
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~~ell~~-~~vD~V~i~tp~ 74 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEY------GIPVFATLAEMMQH-VQMDAVYIASPH 74 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHH------TCCEESSHHHHHHH-SCCSEEEECSCG
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc------CCCeECCHHHHHcC-CCCCEEEEcCCc
Confidence 4689999999 9999999999876 5565 48899999988877653 35678999999875 348999999999
Q ss_pred ChhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEec
Q 010702 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
....+.+...+ ..|+ ++++- -+......+++.+..+++|+.+.-
T Consensus 75 ~~H~~~~~~al----~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v 120 (387)
T 3moi_A 75 QFHCEHVVQAS----EQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVV 120 (387)
T ss_dssp GGHHHHHHHHH----HTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHH----HCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEE
Confidence 76555444333 3444 44442 234566777787777777776543
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=3.2e-06 Score=85.94 Aligned_cols=109 Identities=11% Similarity=0.142 Sum_probs=74.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|+|+|+|.||..+|+.|.+.|.+|.++|+++++++++.+... .... +.+++.. .+||+++.|.... .+
T Consensus 174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~g------a~~v-~~~~ll~--~~~DIvip~a~~~-~I 243 (364)
T 1leh_A 174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEG------ADAV-APNAIYG--VTCDIFAPCALGA-VL 243 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC------CEEC-CGGGTTT--CCCSEEEECSCSC-CB
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcC------CEEE-ChHHHhc--cCCcEeeccchHH-Hh
Confidence 58999999999999999999999999999999998887776521 2222 4444443 1499999886543 22
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
.. ..++.+ ...+|++.+|.. ...++..+.+.++|+.|+.
T Consensus 244 ~~---~~~~~l-g~~iV~e~An~p-~t~~ea~~~L~~~Gi~~~P 282 (364)
T 1leh_A 244 ND---FTIPQL-KAKVIAGSADNQ-LKDPRHGKYLHELGIVYAP 282 (364)
T ss_dssp ST---THHHHC-CCSEECCSCSCC-BSSHHHHHHHHHHTCEECC
T ss_pred CH---HHHHhC-CCcEEEeCCCCC-cccHHHHHHHHhCCCEEec
Confidence 21 122334 346676666654 3444566778888886653
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.6e-06 Score=83.76 Aligned_cols=106 Identities=15% Similarity=0.165 Sum_probs=64.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
++||||||+|.||..++..|.+. +++|. ++|+++++.+. .+. .....+++.+. +++|+|++|+|+.
T Consensus 9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~-----~~~~~~~l~~~----~~~DvViiatp~~ 76 (304)
T 3bio_A 9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQ-----PFRVVSDIEQL----ESVDVALVCSPSR 76 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCT-----TSCEESSGGGS----SSCCEEEECSCHH
T ss_pred CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCC-----CcCCHHHHHhC----CCCCEEEECCCch
Confidence 35899999999999999999874 67776 79999887654 211 11223444433 3499999999986
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC---ChhhHHHHHHHHHhcCcc
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE---WYLNTERRIHEASQKGLL 127 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~---~~~~t~~~~~~l~~~gi~ 127 (503)
...+ .+. ..+..|..|++.... ......++.+..++.|..
T Consensus 77 ~h~~-~~~---~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~ 119 (304)
T 3bio_A 77 EVER-TAL---EILKKGICTADSFDIHDGILALRRSLGDAAGKSGAA 119 (304)
T ss_dssp HHHH-HHH---HHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCE
T ss_pred hhHH-HHH---HHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCE
Confidence 4433 332 345568888887542 333445556666666643
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=98.13 E-value=2.1e-06 Score=84.33 Aligned_cols=114 Identities=17% Similarity=0.046 Sum_probs=78.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|+|+|.||++++..|++.|. +|+++||++++.+++.+.....+ .+.. .+++++.. .+|+||.++|.+..
T Consensus 127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~--~~~~-~~~~~l~~---~aDiIInaTp~gm~ 200 (281)
T 3o8q_A 127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG--EVKA-QAFEQLKQ---SYDVIINSTSASLD 200 (281)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS--CEEE-EEGGGCCS---CEEEEEECSCCCC-
T ss_pred CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC--CeeE-eeHHHhcC---CCCEEEEcCcCCCC
Confidence 579999999999999999999996 89999999999988876543211 1222 24454433 48999999998743
Q ss_pred HHHH-HHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc-Eec
Q 010702 86 VDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL-YLG 130 (503)
Q Consensus 86 v~~v-l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~-~i~ 130 (503)
.+.. +. ...+.++.+|+|+... |..|. +.+..+++|+. .++
T Consensus 201 ~~~~~l~--~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~~~~~ 243 (281)
T 3o8q_A 201 GELPAID--PVIFSSRSVCYDMMYG-KGYTV-FNQWARQHGCAQAID 243 (281)
T ss_dssp ---CSCC--GGGEEEEEEEEESCCC-SSCCH-HHHHHHHTTCSEEEC
T ss_pred CCCCCCC--HHHhCcCCEEEEecCC-CccCH-HHHHHHHCCCCEEEC
Confidence 2211 11 1246678999999876 44554 44566777875 443
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=8.7e-06 Score=85.00 Aligned_cols=119 Identities=11% Similarity=0.049 Sum_probs=81.6
Q ss_pred CCcEEEEcccHHHH-HHHHHHHhC-CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQ-NLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~-~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
++||||||+|.||. .++..|.+. +++| .++|+++++.+++.+...... ..+..+.++++++++ ++.|+|++++|+
T Consensus 83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~-~~~~~~~~~~~ll~~-~~vD~V~iatp~ 160 (433)
T 1h6d_A 83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDP-RKIYDYSNFDKIAKD-PKIDAVYIILPN 160 (433)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCG-GGEECSSSGGGGGGC-TTCCEEEECSCG
T ss_pred ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCc-ccccccCCHHHHhcC-CCCCEEEEcCCc
Confidence 35899999999997 899998875 5664 689999999888776531100 012357889998863 238999999999
Q ss_pred ChhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEec
Q 010702 83 GSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
....+.+... +..|. ++++- .+....+.+++.+.++++|+.+..
T Consensus 161 ~~h~~~~~~a----l~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v 206 (433)
T 1h6d_A 161 SLHAEFAIRA----FKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMI 206 (433)
T ss_dssp GGHHHHHHHH----HHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred hhHHHHHHHH----HHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEE
Confidence 7654444433 33455 55553 344566777787777777776553
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.8e-05 Score=83.64 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=83.7
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhC--CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 7 SRIGLAGL----AVMGQNLALNVAEK--GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIGl----G~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
+||||||+ |.||..++..|.+. +++| .++|+++++.+.+.+..... ....+.++++++++ ++.|+|++|
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~---~~~~~~d~~ell~~-~~vD~V~I~ 115 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLK---HATGFDSLESFAQY-KDIDMIVVS 115 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCT---TCEEESCHHHHHHC-TTCSEEEEC
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCC---cceeeCCHHHHhcC-CCCCEEEEc
Confidence 57999999 99999999999986 6775 58999999988887653211 12478999999874 248999999
Q ss_pred cCCChhHHHHHHHHHhcCC---CCCEEEec-CCCChhhHHHHHHHHHhcC-ccEe
Q 010702 80 VKAGSPVDQTIAALSEHMS---PGDCIIDG-GNEWYLNTERRIHEASQKG-LLYL 129 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~---~g~iIId~-st~~~~~t~~~~~~l~~~g-i~~i 129 (503)
+|+....+.++..+....+ .-.++++- -+....+.+++.+.++++| +.+.
T Consensus 116 tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~~ 170 (479)
T 2nvw_A 116 VKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTI 170 (479)
T ss_dssp SCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEE
T ss_pred CCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEE
Confidence 9987655544444332200 02477764 3445677778888777777 6543
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.5e-05 Score=81.53 Aligned_cols=88 Identities=17% Similarity=0.219 Sum_probs=70.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh------HHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS------KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~------~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
++|+|||.|..|.+-|+||.+.|.+|.+--|... +.+.+.+.| +.+ .+++|+++. +|+|++.+
T Consensus 38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~G-------f~v-~~~~eA~~~---ADvV~~L~ 106 (491)
T 3ulk_A 38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG-------FKV-GTYEELIPQ---ADLVINLT 106 (491)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTT-------CEE-EEHHHHGGG---CSEEEECS
T ss_pred CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCC-------CEe-cCHHHHHHh---CCEEEEeC
Confidence 6899999999999999999999999999877432 233333333 333 478999888 99999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEec
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDG 106 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~ 106 (503)
|+. .-.++.+.+.|.|++|+++.-.
T Consensus 107 PD~-~q~~vy~~I~p~lk~G~~L~fa 131 (491)
T 3ulk_A 107 PDK-QHSDVVRTVQPLMKDGAALGYS 131 (491)
T ss_dssp CGG-GHHHHHHHHGGGSCTTCEEEES
T ss_pred Chh-hHHHHHHHHHhhCCCCCEEEec
Confidence 995 5566788999999999988754
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1e-05 Score=85.41 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=72.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|+|||+|.||..+|+.+...|.+|.++|+++.+.+...+.+ +. ..++++++.. +|+|+.+++....+
T Consensus 275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~G-------a~-~~~l~e~l~~---aDvVi~atgt~~~i 343 (494)
T 3ce6_A 275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEG-------FD-VVTVEEAIGD---ADIVVTATGNKDII 343 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHGGG---CSEEEECSSSSCSB
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CE-EecHHHHHhC---CCEEEECCCCHHHH
Confidence 5799999999999999999999999999999999877665544 33 3577787766 99999999875422
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
. .+.+..+++|.+|++.+....
T Consensus 344 ~---~~~l~~mk~ggilvnvG~~~~ 365 (494)
T 3ce6_A 344 M---LEHIKAMKDHAILGNIGHFDN 365 (494)
T ss_dssp C---HHHHHHSCTTCEEEECSSSGG
T ss_pred H---HHHHHhcCCCcEEEEeCCCCC
Confidence 2 245566889999999988653
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.9e-05 Score=79.06 Aligned_cols=100 Identities=9% Similarity=0.044 Sum_probs=61.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhccc-CC-CCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE-GQ-LPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~-g~-~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
++||+|||+|.+|.+++..|+..|+ +|.++|+++++++......... .. ..++...+..+. ++.+|+||++++
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a---~~~aDvVii~~g 83 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSD---VKDCDVIVVTAG 83 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGG---GTTCSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHH---hCCCCEEEEcCC
Confidence 4699999999999999999999998 8999999987654322111000 00 022222222333 445999999987
Q ss_pred CChh---------------HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 82 AGSP---------------VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 82 ~~~~---------------v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.+.. ++++.+.+.++ .++.+|+..||-
T Consensus 84 ~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP 125 (318)
T 1y6j_A 84 ANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNP 125 (318)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSS
T ss_pred CCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCc
Confidence 6431 35555667666 467777777553
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.05 E-value=3.1e-05 Score=78.36 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=78.1
Q ss_pred CcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+||||||+|.||.. .+..+.+. +++|. ++|+++++.+ +.. . ....+.+++++++. ++.|+|++|+|+.
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~--~---~~~~~~~~~~ll~~-~~vD~V~i~tp~~ 78 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH---ADW--P---AIPVVSDPQMLFND-PSIDLIVIPTPND 78 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---TTC--S---SCCEESCHHHHHHC-SSCCEEEECSCTT
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH---hhC--C---CCceECCHHHHhcC-CCCCEEEEeCChH
Confidence 57999999999997 77777765 67764 8899998765 211 1 35678999999875 4489999999998
Q ss_pred hhHHHHHHHHHhcCCCCC-EEEecC-CCChhhHHHHHHHHHhcCccEe
Q 010702 84 SPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i 129 (503)
...+.+...+ ..|+ ++++-- +....+.+++.+..++.|+.+.
T Consensus 79 ~H~~~~~~al----~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~ 122 (352)
T 3kux_A 79 THFPLAQSAL----AAGKHVVVDKPFTVTLSQANALKEHADDAGLLLS 122 (352)
T ss_dssp THHHHHHHHH----HTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHH----HCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 6655444433 3454 555533 4556677778777777776554
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=3.1e-05 Score=77.50 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=69.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHH----HHHhhccc-CCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDE----TLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~----l~~~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
++||+|||+|.||.++|..|+..|+ +|.++|+++++++. +....... ...++..+.+. +.+++ +|+||++
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~---aDiVIia 82 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEG---ADVVIVT 82 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCC---CCEEEEc
Confidence 4689999999999999999999999 99999999987642 22211000 00135555665 44444 9999999
Q ss_pred cCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
...+. .++++...+.... ++.+|+..||-....+
T Consensus 83 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPvd~~t 131 (324)
T 3gvi_A 83 AGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPLDAMV 131 (324)
T ss_dssp CSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHH
T ss_pred cCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCcHHHH
Confidence 74321 2334445565554 7788888887543333
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.2e-05 Score=79.98 Aligned_cols=96 Identities=11% Similarity=0.103 Sum_probs=65.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhH---HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSK---VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~---~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
++||+|||+|.||..+|..|+.+|+ +|.++|++++. ..++..... . +++.+.++++ +++ +|+||+++
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~-~---~i~~t~d~~~-l~~---aD~Vi~aa 85 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNL-P---NVEISKDLSA-SAH---SKVVIFTV 85 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTC-T---TEEEESCGGG-GTT---CSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcC-C---CeEEeCCHHH-HCC---CCEEEEcC
Confidence 4689999999999999999999999 99999999852 222322111 1 4666667633 344 99999997
Q ss_pred CCC--------------hhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAG--------------SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~--------------~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
..+ ..+++++..+.++. ++.+|+..||..
T Consensus 86 g~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~ 128 (303)
T 2i6t_A 86 NSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPV 128 (303)
T ss_dssp CC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChH
Confidence 322 12455556776665 778888888843
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.6e-05 Score=83.19 Aligned_cols=119 Identities=16% Similarity=0.152 Sum_probs=84.0
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhC--CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 7 SRIGLAGL----AVMGQNLALNVAEK--GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIGl----G~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
+||||||+ |.||..++..|.+. +++| .++|+++++.+.+.+..... .+..+.++++++++ ++.|+|++|
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~---~~~~~~~~~~ll~~-~~vD~V~i~ 96 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLS---NATAFPTLESFASS-STIDMIVIA 96 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCT---TCEEESSHHHHHHC-SSCSEEEEC
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCC---cceeeCCHHHHhcC-CCCCEEEEe
Confidence 47999999 99999999999987 6775 58999999988877653211 13478899999874 238999999
Q ss_pred cCCChhHHHHHHHHHhc--CC-CCCEEEec-CCCChhhHHHHHHHHHhcCccEe
Q 010702 80 VKAGSPVDQTIAALSEH--MS-PGDCIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~--l~-~g~iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (503)
+|+....+.++..+... .+ .-.++++- .+....+.+++.+.+++.|+.+.
T Consensus 97 tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 150 (438)
T 3btv_A 97 IQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTI 150 (438)
T ss_dssp SCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEE
T ss_pred CCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEE
Confidence 99876555544444332 00 02567763 44556777788887777776544
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.03 E-value=6e-06 Score=84.00 Aligned_cols=86 Identities=26% Similarity=0.514 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHhccCC-cchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHH
Q 010702 213 GGLSNAELAEIFDEWNKGE-LESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLD 291 (503)
Q Consensus 213 g~~~~~~i~~~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~ 291 (503)
+ ++.+++.++ |+.|. +.||+++++.+++.++. . ++.+.+.+.++|+|+|++++|.+.|||+|++++|++
T Consensus 259 ~-~d~~~i~~~---~~~g~~~~s~~l~~~~~~~~~~p----~--~~~~~~~~~d~g~~r~~~~~A~~~gvp~p~~~~al~ 328 (358)
T 4e21_A 259 D-LDLADITEV---WRRGSVISSWLLDLSATALLDSP----D--LQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSSALY 328 (358)
T ss_dssp C-CCHHHHHHH---HTTTSTTCBHHHHHHHHHHHHCT----T--CTTC--CCCCCSHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred C-CCHHHHHHH---HhCccHHHHHHHHHHHHHHhhCC----C--hHHHHHHHHhcCcHHHHHHHHHHcCCChHHHHHHHH
Confidence 5 777777665 78876 79999999998887532 1 123445556789999999999999999999999999
Q ss_pred HHHHhcchHHHHHHHHHhc
Q 010702 292 CRYLSGLKEEREKAAKVLK 310 (503)
Q Consensus 292 ~r~~s~~~~~r~~~~~~~~ 310 (503)
+|+.|. .+|.-+++++.
T Consensus 329 ~~~~s~--~~~~~~~~l~~ 345 (358)
T 4e21_A 329 ERFSSR--GEDDFANRLLS 345 (358)
T ss_dssp HHHHHT--TTTHHHHHHHH
T ss_pred HHHHHC--CCcccHHHHHH
Confidence 999984 34444444443
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=3.8e-06 Score=82.17 Aligned_cols=116 Identities=22% Similarity=0.151 Sum_probs=75.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|.|+|+|.||++++..|++.|.+|+++||++++.+++.+.....+ .+.. .+++++.+ ..+|+||.++|.+...
T Consensus 120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~--~~~~-~~~~~~~~--~~~DivIn~t~~~~~~ 194 (272)
T 1p77_A 120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG--NIQA-VSMDSIPL--QTYDLVINATSAGLSG 194 (272)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS--CEEE-EEGGGCCC--SCCSEEEECCCC----
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccC--CeEE-eeHHHhcc--CCCCEEEECCCCCCCC
Confidence 57999999999999999999999999999999999888876532110 1222 23333222 2499999999986431
Q ss_pred HHHHHHH-HhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc-Eec
Q 010702 87 DQTIAAL-SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL-YLG 130 (503)
Q Consensus 87 ~~vl~~l-~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~-~i~ 130 (503)
.+. .+ ...+.++.+++|.+.....++. ..+..+++|.. +++
T Consensus 195 -~~~-~i~~~~l~~~~~v~D~~y~p~~~t~-ll~~a~~~G~~~~v~ 237 (272)
T 1p77_A 195 -GTA-SVDAEILKLGSAFYDMQYAKGTDTP-FIALCKSLGLTNVSD 237 (272)
T ss_dssp -----CCCHHHHHHCSCEEESCCCTTSCCH-HHHHHHHTTCCCEEC
T ss_pred -CCC-CCCHHHcCCCCEEEEeeCCCCcCCH-HHHHHHHcCCCEeeC
Confidence 110 01 0123468899999885433254 44556677776 554
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=3.8e-05 Score=80.32 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=80.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeC----CHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHY----TPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~----s~~e~~~~l~~~dvIil~v 80 (503)
+||||||+|.||...+..|.+. |++| .++|+++++.+++.+.....|.-....+. ++++++++ ++.|+|++|+
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~-~~vD~V~i~t 99 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKD-KNIDAVFVSS 99 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTC-TTCCEEEECC
T ss_pred ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcC-CCCCEEEEcC
Confidence 5899999999999999999875 6665 58999999988876531100000135567 89999874 3489999999
Q ss_pred CCChhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEe
Q 010702 81 KAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (503)
|+....+.++..+ ..|+ ++++- -+....+.+++.+..++.|+.+.
T Consensus 100 p~~~h~~~~~~al----~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~ 146 (444)
T 2ixa_A 100 PWEWHHEHGVAAM----KAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLM 146 (444)
T ss_dssp CGGGHHHHHHHHH----HTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEE
T ss_pred CcHHHHHHHHHHH----HCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 9976655444433 3455 44442 23455677777777777776543
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.3e-05 Score=79.90 Aligned_cols=113 Identities=15% Similarity=0.085 Sum_probs=81.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhC---------CCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK---------GFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~---------G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvI 76 (503)
.||||||+|.||...+..+.+. +.+ |.++|+++++++++.++... ...++|.++++++ ++.|+|
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~-----~~~y~d~~~ll~~-~~vD~V 100 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGA-----EKAYGDWRELVND-PQVDVV 100 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTC-----SEEESSHHHHHHC-TTCCEE
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCC-----CeEECCHHHHhcC-CCCCEE
Confidence 4799999999999999888764 334 45889999999988876421 2578899999975 347999
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCCE-EEec-CCCChhhHHHHHHHHHhcCccEe
Q 010702 77 IILVKAGSPVDQTIAALSEHMSPGDC-IIDG-GNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~i-IId~-st~~~~~t~~~~~~l~~~gi~~i 129 (503)
++|+|+....+-++..|. .|+- ++.- -+....+.+++.+..+++|+.+.
T Consensus 101 ~I~tp~~~H~~~~~~al~----aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 151 (412)
T 4gqa_A 101 DITSPNHLHYTMAMAAIA----AGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTM 151 (412)
T ss_dssp EECSCGGGHHHHHHHHHH----TTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred EECCCcHHHHHHHHHHHH----cCCCeEeecCCcCCHHHHHHHHHHHHHhCCeee
Confidence 999999876665555443 4444 4442 12345677777777777776544
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.01 E-value=5.5e-05 Score=77.14 Aligned_cols=112 Identities=18% Similarity=0.152 Sum_probs=77.2
Q ss_pred cEEEEcccHHHHHHHHHHHhC--------CCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 8 RIGLAGLAVMGQNLALNVAEK--------GFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~--------G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
||||||+|.||...+..+... +.+ |.++|+++++.+++.++... ...++|.++++++ ++.|+|++
T Consensus 27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~-----~~~y~d~~ell~~-~~iDaV~I 100 (393)
T 4fb5_A 27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGF-----EKATADWRALIAD-PEVDVVSV 100 (393)
T ss_dssp EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTC-----SEEESCHHHHHHC-TTCCEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCC-----CeecCCHHHHhcC-CCCcEEEE
Confidence 699999999999887776532 445 55889999999988876421 2578899999975 34799999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCE-EEec-CCCChhhHHHHHHHHHhcCccEe
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDC-IIDG-GNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~i-IId~-st~~~~~t~~~~~~l~~~gi~~i 129 (503)
|+|+....+-++..+. .|+- +++- -+....+.+++.+..++.|+.+.
T Consensus 101 atP~~~H~~~a~~al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~ 149 (393)
T 4fb5_A 101 TTPNQFHAEMAIAALE----AGKHVWCEKPMAPAYADAERMLATAERSGKVAA 149 (393)
T ss_dssp CSCGGGHHHHHHHHHH----TTCEEEECSCSCSSHHHHHHHHHHHHHSSSCEE
T ss_pred CCChHHHHHHHHHHHh----cCCeEEEccCCcccHHHHHHhhhhHHhcCCccc
Confidence 9999877665555443 4444 4431 12345667777777777776443
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=98.00 E-value=2.1e-05 Score=79.60 Aligned_cols=115 Identities=10% Similarity=0.149 Sum_probs=76.0
Q ss_pred CCCcEEEEcccHHHH-HHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 5 ALSRIGLAGLAVMGQ-NLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~-~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|++||||||+|.||. ..+..+.+. +++|. ++|++ +.+++.+..... ++..+.+++++++. ++.|+|++|+|
T Consensus 1 M~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~---~~~~~~~~~~ll~~-~~~D~V~i~tp 74 (349)
T 3i23_A 1 MTVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKEK---GVNFTADLNELLTD-PEIELITICTP 74 (349)
T ss_dssp CCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHTT---TCEEESCTHHHHSC-TTCCEEEECSC
T ss_pred CeeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCCC---CCeEECCHHHHhcC-CCCCEEEEeCC
Confidence 456999999999998 466666554 66764 88988 344454432111 35778999999874 34799999999
Q ss_pred CChhHHHHHHHHHhcCCCCC-EEEecC-CCChhhHHHHHHHHHhcCccEe
Q 010702 82 AGSPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i 129 (503)
+....+.+...+ ..|+ ++++-- +....+.+++.+..+++|+.+.
T Consensus 75 ~~~h~~~~~~al----~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 120 (349)
T 3i23_A 75 AHTHYDLAKQAI----LAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVM 120 (349)
T ss_dssp GGGHHHHHHHHH----HTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred cHHHHHHHHHHH----HcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 976655444333 3454 444422 3345677777777777777554
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.2e-05 Score=79.35 Aligned_cols=116 Identities=11% Similarity=0.141 Sum_probs=80.0
Q ss_pred CcEEEEcccH---HHHHHHHHHHhCC-CcEE--EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhcc----CCCcEE
Q 010702 7 SRIGLAGLAV---MGQNLALNVAEKG-FPIS--VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSI----QRPRSV 76 (503)
Q Consensus 7 ~~IgIIGlG~---mG~~lA~~L~~~G-~~V~--v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l----~~~dvI 76 (503)
.||||||+|. ||...+..+...+ ++|. ++|+++++.+++.++.... ....+++++++++.- ++.|+|
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~---~~~~~~~~~~ll~~~~~~~~~vD~V 114 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLD---PSRVYSDFKEMAIREAKLKNGIEAV 114 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCC---GGGBCSCHHHHHHHHHHCTTCCSEE
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCC---cccccCCHHHHHhcccccCCCCcEE
Confidence 3799999999 9999998888776 5654 6799999998887653210 014678999998741 348999
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCCEE-Eec-CCCChhhHHHHHHHHHhcCccEe
Q 010702 77 IILVKAGSPVDQTIAALSEHMSPGDCI-IDG-GNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iI-Id~-st~~~~~t~~~~~~l~~~gi~~i 129 (503)
++|+|+....+-+... +..|+-| ++- -+....+.+++.+..++.|+.+.
T Consensus 115 ~I~tp~~~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 165 (417)
T 3v5n_A 115 AIVTPNHVHYAAAKEF----LKRGIHVICDKPLTSTLADAKKLKKAADESDALFV 165 (417)
T ss_dssp EECSCTTSHHHHHHHH----HTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEE
T ss_pred EECCCcHHHHHHHHHH----HhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 9999998665544333 3455544 442 13455677777777777776543
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=6e-06 Score=84.44 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=79.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
+.||||||+| +|...+..+.+. ++++. ++|+++++.+++.++. ++..++|++++.++ .|++++++|+
T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~------gv~~~~~~~~l~~~---~D~v~i~~p~ 76 (372)
T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAF------GIPLYTSPEQITGM---PDIACIVVRS 76 (372)
T ss_dssp CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHT------TCCEESSGGGCCSC---CSEEEECCC-
T ss_pred CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHh------CCCEECCHHHHhcC---CCEEEEECCC
Confidence 4589999999 799888888765 56755 7899999999888764 46678999998876 9999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
......-.+-....|..|.-|+.-=-....+.+++.+..+++|+.|.-
T Consensus 77 ~~h~~~~~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g~~~~v 124 (372)
T 4gmf_A 77 TVAGGAGTQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQGCCYWI 124 (372)
T ss_dssp -CTTSHHHHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred cccchhHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHcCCEEEE
Confidence 643111111112223456555544344566777777777788876653
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.99 E-value=4.4e-05 Score=80.29 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=53.5
Q ss_pred CCcEEEEcccHHH--HHHHHHHHhC----CCcEEEEeCChhHHHHHHHhhc----cc-CCCCeeeeCCHHHHHhccCCCc
Q 010702 6 LSRIGLAGLAVMG--QNLALNVAEK----GFPISVYNRTTSKVDETLDRAH----RE-GQLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 6 ~~~IgIIGlG~mG--~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~----~~-g~~~i~~~~s~~e~~~~l~~~d 74 (503)
++||+|||+|.|| .++|..|+.. |++|.+||+++++++....... .. ...+++.++++++.+++ ||
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~d---AD 79 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID---AD 79 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---CS
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCC---CC
Confidence 4699999999974 6667788754 8999999999988665432210 00 01146777788777776 99
Q ss_pred EEEEecCC
Q 010702 75 SVIILVKA 82 (503)
Q Consensus 75 vIil~vp~ 82 (503)
+||+++|.
T Consensus 80 ~VIiaagv 87 (480)
T 1obb_A 80 FVINTAMV 87 (480)
T ss_dssp EEEECCCT
T ss_pred EEEECCCc
Confidence 99999975
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=7.8e-06 Score=84.22 Aligned_cols=90 Identities=9% Similarity=0.058 Sum_probs=69.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|+|+|+|.+|..+|+.|...|.+|.++|+++.+.......+ +. ..++++++.. +|+|++|.-.
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G-------~~-v~~Leeal~~---ADIVi~atgt---- 285 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDG-------FR-LVKLNEVIRQ---VDIVITCTGN---- 285 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHTTT---CSEEEECSSC----
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcC-------CE-eccHHHHHhc---CCEEEECCCC----
Confidence 5799999999999999999999999999999987655444333 22 3578888876 9999997322
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCCh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~ 111 (503)
..++ .+.+..+++|.+||+.+....
T Consensus 286 ~~lI~~e~l~~MK~gailINvgrg~~ 311 (435)
T 3gvp_A 286 KNVVTREHLDRMKNSCIVCNMGHSNT 311 (435)
T ss_dssp SCSBCHHHHHHSCTTEEEEECSSTTT
T ss_pred cccCCHHHHHhcCCCcEEEEecCCCc
Confidence 2234 355667889999999988754
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.1e-05 Score=81.18 Aligned_cols=90 Identities=13% Similarity=0.009 Sum_probs=70.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|+|||+|.+|+.+|+.+...|.+|.++|+++.+.......+ +. ..++++++.. +|+|+++..+..
T Consensus 248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G-------~~-vv~LeElL~~---ADIVv~atgt~~-- 314 (464)
T 3n58_A 248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDG-------FE-VVTLDDAAST---ADIVVTTTGNKD-- 314 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT-------CE-ECCHHHHGGG---CSEEEECCSSSS--
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcC-------ce-eccHHHHHhh---CCEEEECCCCcc--
Confidence 5799999999999999999999999999999987654443332 23 3578888887 999998865432
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCCh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~ 111 (503)
++ .+.+..+++|.+||+++....
T Consensus 315 --lI~~e~l~~MK~GAILINvGRgdv 338 (464)
T 3n58_A 315 --VITIDHMRKMKDMCIVGNIGHFDN 338 (464)
T ss_dssp --SBCHHHHHHSCTTEEEEECSSSTT
T ss_pred --ccCHHHHhcCCCCeEEEEcCCCCc
Confidence 33 455667889999999987653
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=4.9e-05 Score=78.73 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=75.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~~ 83 (503)
.++|.|+|+|.+|..+++.|.+.|++|++.|+++++++.+.+.+.. -+.+..+-.+++. .++++|+||++++++
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~----vi~GDat~~~~L~~agi~~A~~viv~~~~~ 79 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMK----VFYGDATRMDLLESAGAAKAEVLINAIDDP 79 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCC----CEESCTTCHHHHHHTTTTTCSEEEECCSSH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCe----EEEcCCCCHHHHHhcCCCccCEEEECCCCh
Confidence 4689999999999999999999999999999999999988765532 1222333334443 356799999999986
Q ss_pred hhHHHHHHHHHhcCCCC-CEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 84 SPVDQTIAALSEHMSPG-DCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g-~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
.....++..+ ..+.+. .||+-..+ + .....+...|+..+-
T Consensus 80 ~~n~~i~~~a-r~~~p~~~Iiara~~--~----~~~~~L~~~Gad~Vi 120 (413)
T 3l9w_A 80 QTNLQLTEMV-KEHFPHLQIIARARD--V----DHYIRLRQAGVEKPE 120 (413)
T ss_dssp HHHHHHHHHH-HHHCTTCEEEEEESS--H----HHHHHHHHTTCSSCE
T ss_pred HHHHHHHHHH-HHhCCCCeEEEEECC--H----HHHHHHHHCCCCEEE
Confidence 4433333333 334454 45544332 1 233445566765543
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=9.8e-06 Score=83.05 Aligned_cols=94 Identities=20% Similarity=0.209 Sum_probs=68.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-ee---eCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TG---HYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~---~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
++|+|||+|.+|..+|+.+...|.+|+++|+++++.+.+.+.... .+ .. ..++++++.. +|+||.+++.
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~----~~~~~~~~~~~l~~~l~~---aDvVi~~~~~ 241 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCG----RIHTRYSSAYELEGAVKR---ADLVIGAVLV 241 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT----SSEEEECCHHHHHHHHHH---CSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCC----eeEeccCCHHHHHHHHcC---CCEEEECCCc
Confidence 579999999999999999999999999999999988776653211 11 11 2234555555 9999998854
Q ss_pred Chh-HHHH-HHHHHhcCCCCCEEEecC
Q 010702 83 GSP-VDQT-IAALSEHMSPGDCIIDGG 107 (503)
Q Consensus 83 ~~~-v~~v-l~~l~~~l~~g~iIId~s 107 (503)
+.. ...+ ..+.++.+++|.+|||.+
T Consensus 242 p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 242 PGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp TTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 321 1111 245567788999999987
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.97 E-value=7.5e-05 Score=66.00 Aligned_cols=100 Identities=13% Similarity=0.227 Sum_probs=63.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC-hhHHHHHHHhhcccCCCCe-eee-CCHHHHHh-ccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRT-TSKVDETLDRAHREGQLPL-TGH-YTPRDFVL-SIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~~~~~g~~~i-~~~-~s~~e~~~-~l~~~dvIil~vp~ 82 (503)
++|.|+|+|.+|..++..|.+.|++|++.|++ +++.+.+.+.... + ..+ ... .+++.+.+ .++.+|.||+++++
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~-~-~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 81 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD-N-ADVIPGDSNDSSVLKKAGIDRCRAILALSDN 81 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT-T-CEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcC-C-CeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence 57999999999999999999999999999998 4655555432110 0 011 111 23333322 36679999999988
Q ss_pred ChhHHHHHHHHHhcC-CCCCEEEecCCC
Q 010702 83 GSPVDQTIAALSEHM-SPGDCIIDGGNE 109 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l-~~g~iIId~st~ 109 (503)
+ .....+..+...+ +...+|+...+.
T Consensus 82 d-~~n~~~~~~a~~~~~~~~ii~~~~~~ 108 (153)
T 1id1_A 82 D-ADNAFVVLSAKDMSSDVKTVLAVSDS 108 (153)
T ss_dssp H-HHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred h-HHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 5 4444444444444 445677666543
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.97 E-value=6e-05 Score=75.40 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=66.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc----cC-CCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR----EG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~----~g-~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
++||+|||+|.||.++|..|+..|+ +|.++|+++++++........ .+ ..++..+.+. +.+++ +|+||++
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~-~a~~~---aDvVIi~ 80 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDY-KDLEN---SDVVIVT 80 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCH-HHHCC---CCEEEEc
Confidence 4699999999999999999999998 999999999876532211100 00 0134444554 33444 9999999
Q ss_pred cCCC---------------hhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
...+ ..+++++..+.... ++.+|+..||..
T Consensus 81 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPv 125 (321)
T 3p7m_A 81 AGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPL 125 (321)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred CCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCch
Confidence 7433 12344445666655 677777777643
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.97 E-value=3.3e-05 Score=81.16 Aligned_cols=107 Identities=13% Similarity=0.190 Sum_probs=73.3
Q ss_pred CcEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChhHHHHHHHhhc----c-cCCCCeeeeCCHHHHHhccCCCcE
Q 010702 7 SRIGLAGLAVM-GQNLALNVAEK-----GFPISVYNRTTSKVDETLDRAH----R-EGQLPLTGHYTPRDFVLSIQRPRS 75 (503)
Q Consensus 7 ~~IgIIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~l~~~~~----~-~g~~~i~~~~s~~e~~~~l~~~dv 75 (503)
+||+|||+|.+ |.++|..|+.. +.+|.+||+++++++...+... . ....++..+.++++++++ +|+
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~---AD~ 105 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD---VDF 105 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS---CSE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcC---CCE
Confidence 38999999998 66688888887 6789999999988665332110 0 001146667788777776 999
Q ss_pred EEEecCCCh-----------------------------------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHH
Q 010702 76 VIILVKAGS-----------------------------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR 117 (503)
Q Consensus 76 Iil~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~ 117 (503)
||+++|.+. .+.++++.+.+. .|+.+||..||-....|...
T Consensus 106 VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~-~P~A~ii~~TNPvdi~T~~~ 181 (472)
T 1u8x_X 106 VMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY-SPDAWMLNYSNPAAIVAEAT 181 (472)
T ss_dssp EEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSCHHHHHHHH
T ss_pred EEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeCCcHHHHHHHH
Confidence 999998742 134444555554 47889998888654444333
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.96 E-value=4.1e-05 Score=77.76 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=75.8
Q ss_pred CcEEEEcccHHHHH-HHHHHHhC-CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQN-LALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~-lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+||||||+|.||.. .+..+.+. +++| .++|+++++. .+... ....+.++++++++ ++.|+|++|+|+.
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~---~~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp~~ 76 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEV---KRDFP-----DAEVVHELEEITND-PAIELVIVTTPSG 76 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHH---HHHCT-----TSEEESSTHHHHTC-TTCCEEEECSCTT
T ss_pred ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH---HhhCC-----CCceECCHHHHhcC-CCCCEEEEcCCcH
Confidence 58999999999997 67777665 6776 4889998763 22211 25678999999884 3489999999998
Q ss_pred hhHHHHHHHHHhcCCCCCE-EEec-CCCChhhHHHHHHHHHhcCccEe
Q 010702 84 SPVDQTIAALSEHMSPGDC-IIDG-GNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~i-IId~-st~~~~~t~~~~~~l~~~gi~~i 129 (503)
...+.+...+ ..|+- +++- -+....+.+++.+..++.|+.+.
T Consensus 77 ~H~~~~~~al----~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~ 120 (358)
T 3gdo_A 77 LHYEHTMACI----QAGKHVVMEKPMTATAEEGETLKRAADEKGVLLS 120 (358)
T ss_dssp THHHHHHHHH----HTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHH----HcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 6655444433 34554 4442 13455677778777777776554
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.95 E-value=3.6e-05 Score=75.13 Aligned_cols=112 Identities=19% Similarity=0.174 Sum_probs=75.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
+++.|+|+|.||.+++..|++.|.+|+++||++++.+++.+.....+ .+.. .+.+++.+ ..+|+||.++|.+..
T Consensus 120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~--~~~~-~~~~~~~~--~~~DivVn~t~~~~~- 193 (271)
T 1nyt_A 120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG--SIQA-LSMDELEG--HEFDLIINATSSGIS- 193 (271)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS--SEEE-CCSGGGTT--CCCSEEEECCSCGGG-
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccC--CeeE-ecHHHhcc--CCCCEEEECCCCCCC-
Confidence 57999999999999999999999999999999999888875422110 1222 23333321 349999999987642
Q ss_pred HHHHHHH-HhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTIAAL-SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl~~l-~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
..+ ..+ ...+.++.+++|.+.. |..+. ..+..+++|..
T Consensus 194 ~~~-~~i~~~~l~~~~~v~D~~y~-p~~t~-~~~~a~~~G~~ 232 (271)
T 1nyt_A 194 GDI-PAIPSSLIHPGIYCYDMFYQ-KGKTP-FLAWCEQRGSK 232 (271)
T ss_dssp TCC-CCCCGGGCCTTCEEEESCCC-SSCCH-HHHHHHHTTCC
T ss_pred CCC-CCCCHHHcCCCCEEEEeccC-CcCCH-HHHHHHHcCCC
Confidence 111 001 1235688999999886 44443 44556667765
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.95 E-value=4.1e-05 Score=79.83 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=55.9
Q ss_pred CcEEEEcccHH--HHHHHHHHHh----CCCcEEEEeCChhHHHHHHHhhcc--cCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGLAVM--GQNLALNVAE----KGFPISVYNRTTSKVDETLDRAHR--EGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~m--G~~lA~~L~~----~G~~V~v~dr~~~~~~~l~~~~~~--~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
+||+|||+|.| |.+++..|+. .| +|++||+++++++........ ....+++.++++++++++ +|+||+
T Consensus 6 ~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~d---ADfVI~ 81 (450)
T 3fef_A 6 IKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSA---ADIVII 81 (450)
T ss_dssp EEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTT---CSEEEE
T ss_pred CEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcC---CCEEEe
Confidence 58999999997 6889988886 57 999999999887655432210 001147788899998887 999999
Q ss_pred ecCCC
Q 010702 79 LVKAG 83 (503)
Q Consensus 79 ~vp~~ 83 (503)
+++.+
T Consensus 82 airvG 86 (450)
T 3fef_A 82 SILPG 86 (450)
T ss_dssp CCCSS
T ss_pred ccccC
Confidence 99754
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.94 E-value=6e-05 Score=76.62 Aligned_cols=112 Identities=11% Similarity=0.116 Sum_probs=79.1
Q ss_pred CcEEEEcccHHHH-HHHHHHHhCCCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQ-NLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~-~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.||||||+|.+|. .++..+...+++| .++|+++++.+++.+... ....+.++++++++ ++.|+|++++|+..
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~-----~~~~~~~~~~ll~~-~~vD~V~I~tp~~~ 100 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYA-----DARRIATAEEILED-ENIGLIVSAAVSSE 100 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSS-----SCCEESCHHHHHTC-TTCCEEEECCCHHH
T ss_pred cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcC-----CCcccCCHHHHhcC-CCCCEEEEeCChHH
Confidence 5899999999994 5777777788885 588999999988877532 13578999999875 34799999999865
Q ss_pred hHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccE
Q 010702 85 PVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (503)
..+-+...+ ..|+ ++++- -+....+.+++.+..+++|+.+
T Consensus 101 H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l 142 (361)
T 3u3x_A 101 RAELAIRAM----QHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIF 142 (361)
T ss_dssp HHHHHHHHH----HTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHH----HCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 544443333 3454 44442 1334566777777777766644
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=5.3e-05 Score=75.92 Aligned_cols=100 Identities=13% Similarity=0.158 Sum_probs=65.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHH----HHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDE----TLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
.+||+|||+|.||.++|..|+..|+ +|.++|+++++++. +.......+ .++....+..+.+++ +|+||++
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~-~~v~i~~~~~~a~~~---aDvVvi~ 80 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAP-QPVKTSYGTYEDCKD---ADIVCIC 80 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSS-SCCEEEEECGGGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhcccccc-CCeEEEeCcHHHhCC---CCEEEEe
Confidence 4689999999999999999999997 89999999987765 332211000 022333333333444 9999999
Q ss_pred cCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+..+. .++++.+.+... .++.+|+..||-.
T Consensus 81 ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvtNPv 125 (326)
T 3pqe_A 81 AGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATNPV 125 (326)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred cccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcCChH
Confidence 85321 123334555554 4677888888743
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.93 E-value=7.9e-05 Score=74.30 Aligned_cols=99 Identities=14% Similarity=0.190 Sum_probs=64.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC--hhHHHHHH----Hhhccc-CCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT--TSKVDETL----DRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~--~~~~~~l~----~~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
+||+|||+|.||.++|..|+.+|+ +|.++|++ +++.+... ...... ...++....+.++ ++ ++|+||+
T Consensus 9 ~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a-~~---~aDvVIi 84 (315)
T 3tl2_A 9 KKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYAD-TA---DSDVVVI 84 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGG-GT---TCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHH-hC---CCCEEEE
Confidence 589999999999999999999999 99999999 44433221 110000 0013555555443 33 3999999
Q ss_pred ecCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 79 LVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 79 ~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+...+. .++++.+.+..+ .++.+|+..||..
T Consensus 85 aag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vlvvsNPv 130 (315)
T 3tl2_A 85 TAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIVVLTNPV 130 (315)
T ss_dssp CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSH
T ss_pred eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEECCChH
Confidence 974321 233444556555 4677888888743
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.92 E-value=5.8e-06 Score=80.80 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=77.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||+|.||++++..|++.|. +|+++||++++.+++.+... .....++. +..+|+||.++|.+..
T Consensus 120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~------~~~~~~~~-----~~~~DivInaTp~gm~ 188 (271)
T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG------YAYINSLE-----NQQADILVNVTSIGMK 188 (271)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT------CEEESCCT-----TCCCSEEEECSSTTCT
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC------Cccchhhh-----cccCCEEEECCCCCcc
Confidence 579999999999999999999997 79999999999988876531 12222222 2349999999997642
Q ss_pred HH---HH--HHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 86 VD---QT--IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 86 v~---~v--l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
.. +. +. ...+.++.+++|.... |..| .+.+..+++|..+++.
T Consensus 189 ~~~~~~~~~~~--~~~l~~~~~v~DlvY~-P~~T-~ll~~A~~~G~~~i~G 235 (271)
T 1npy_A 189 GGKEEMDLAFP--KAFIDNASVAFDVVAM-PVET-PFIRYAQARGKQTISG 235 (271)
T ss_dssp TSTTTTSCSSC--HHHHHHCSEEEECCCS-SSSC-HHHHHHHHTTCEEECH
T ss_pred CccccCCCCCC--HHHcCCCCEEEEeecC-CCCC-HHHHHHHHCCCEEECC
Confidence 11 00 10 0123467899999863 4555 5666777888877654
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=5.6e-05 Score=75.66 Aligned_cols=100 Identities=14% Similarity=0.081 Sum_probs=69.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHH---hh-cccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLD---RA-HREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~---~~-~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
.+||+|||+|.||.++|..|+..|+ +|.++|+++++++.... .. ......++....++++ ++ ++|+||++
T Consensus 21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~---daDiVIit 96 (330)
T 3ldh_A 21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SA---GSKLVVIT 96 (330)
T ss_dssp CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CS---SCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hC---CCCEEEEe
Confidence 4689999999999999999999997 89999999987654321 11 1000013555666665 34 49999998
Q ss_pred cCCC---------------hhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
...+ ..++++...+.+. .++.+++..||-.
T Consensus 97 aG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvtNPv 141 (330)
T 3ldh_A 97 AGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHPELG 141 (330)
T ss_dssp CSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCCCcc
Confidence 6432 1244555677776 5788888888743
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.88 E-value=7e-05 Score=76.27 Aligned_cols=111 Identities=19% Similarity=0.148 Sum_probs=75.8
Q ss_pred cEEEEcccHHHHHHHHHHHhCC--------Cc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 8 RIGLAGLAVMGQNLALNVAEKG--------FP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G--------~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
||||||+|.||...+..+.... .+ |.++|+++++.+++.++... ...++|.++++++ ++.|+|++
T Consensus 8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~-----~~~~~d~~~ll~~-~~iDaV~I 81 (390)
T 4h3v_A 8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGW-----STTETDWRTLLER-DDVQLVDV 81 (390)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTC-----SEEESCHHHHTTC-TTCSEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCC-----CcccCCHHHHhcC-CCCCEEEE
Confidence 7999999999999888887542 24 45889999999888876421 2568899999875 34799999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHH---HHHhcCccE
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIH---EASQKGLLY 128 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~---~l~~~gi~~ 128 (503)
|+|+....+-++..+. .|+ +++.- -+....+.+++.+ ..++.|+.+
T Consensus 82 ~tP~~~H~~~~~~al~----aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~ 132 (390)
T 4h3v_A 82 CTPGDSHAEIAIAALE----AGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRS 132 (390)
T ss_dssp CSCGGGHHHHHHHHHH----TTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCE
T ss_pred eCChHHHHHHHHHHHH----cCCCceeecCcccchhHHHHHHHHHHHHHhcCCce
Confidence 9999877666655543 444 44441 1223456666633 344455543
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.6e-05 Score=79.69 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=66.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee----eCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~----~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
++|+|+|+|.+|..+++.+...|++|+++||++++.+.+.+.... .+.. ..++++++.. +|+||.+++.
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~l~~~~~~---~DvVi~~~g~ 239 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGG----RVITLTATEANIKKSVQH---ADLLIGAVLV 239 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT----SEEEEECCHHHHHHHHHH---CSEEEECCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCc----eEEEecCCHHHHHHHHhC---CCEEEECCCC
Confidence 579999999999999999999999999999999988776553211 1111 1234455555 9999999985
Q ss_pred Ch-hHHHH-HHHHHhcCCCCCEEEecCC
Q 010702 83 GS-PVDQT-IAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 83 ~~-~v~~v-l~~l~~~l~~g~iIId~st 108 (503)
.. ....+ ....++.+++|.+|||.+.
T Consensus 240 ~~~~~~~li~~~~l~~mk~gg~iV~v~~ 267 (369)
T 2eez_A 240 PGAKAPKLVTRDMLSLMKEGAVIVDVAV 267 (369)
T ss_dssp ------CCSCHHHHTTSCTTCEEEECC-
T ss_pred CccccchhHHHHHHHhhcCCCEEEEEec
Confidence 42 11111 2556677888999999884
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.88 E-value=4.2e-05 Score=77.72 Aligned_cols=110 Identities=16% Similarity=0.193 Sum_probs=76.3
Q ss_pred CcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
.||||||+|.||.. .+..|.+. +++|. ++|+++++. .+... ....+.++++++++ ++.|+|++|+|+.
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~---~~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp~~ 76 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELS---KERYP-----QASIVRSFKELTED-PEIDLIVVNTPDN 76 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGG---GTTCT-----TSEEESCSHHHHTC-TTCCEEEECSCGG
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH---HHhCC-----CCceECCHHHHhcC-CCCCEEEEeCChH
Confidence 58999999999997 67777765 67764 889998762 22110 35678999999875 4489999999997
Q ss_pred hhHHHHHHHHHhcCCCCC-EEEecC-CCChhhHHHHHHHHHhcCccEe
Q 010702 84 SPVDQTIAALSEHMSPGD-CIIDGG-NEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~-iIId~s-t~~~~~t~~~~~~l~~~gi~~i 129 (503)
...+.+...+ ..|+ ++++-- +....+.+++.+..++.|+.+.
T Consensus 77 ~H~~~~~~al----~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 120 (362)
T 3fhl_A 77 THYEYAGMAL----EAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLS 120 (362)
T ss_dssp GHHHHHHHHH----HTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHH----HCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 6655444433 3444 455422 3456677778777777776554
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=4.1e-05 Score=75.44 Aligned_cols=111 Identities=17% Similarity=0.076 Sum_probs=76.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCC
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~ 82 (503)
..||+|+|+ |.||..+++++.+.|++ .++..+|.+.. +. .. ++..+.|++++.+ . +|++++++|+
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~g---~~--~~---G~~vy~sl~el~~~~~---~D~viI~tP~ 74 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKGG---TT--HL---GLPVFNTVREAVAATG---ATASVIYVPA 74 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CE--ET---TEEEESSHHHHHHHHC---CCEEEECCCG
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCccc---ce--eC---CeeccCCHHHHhhcCC---CCEEEEecCH
Confidence 468999998 99999999999998998 45555554210 00 11 4677899999987 5 9999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCC-hhhHHHHHHHHHhcCccEecc
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~-~~~t~~~~~~l~~~gi~~i~~ 131 (503)
. .+.+++.+....= . ..++..+... ..+.+++.+.+++.|+.+++.
T Consensus 75 ~-~~~~~~~ea~~~G-i-~~iVi~t~G~~~~~~~~l~~~A~~~gv~liGP 121 (288)
T 2nu8_A 75 P-FCKDSILEAIDAG-I-KLIITITEGIPTLDMLTVKVKLDEAGVRMIGP 121 (288)
T ss_dssp G-GHHHHHHHHHHTT-C-SEEEECCCCCCHHHHHHHHHHHHHHTCEEECS
T ss_pred H-HHHHHHHHHHHCC-C-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEec
Confidence 6 5666666655421 2 3334444443 344557777777888887754
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.86 E-value=7.8e-05 Score=74.15 Aligned_cols=97 Identities=12% Similarity=0.158 Sum_probs=66.2
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-----cCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-----EGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-----~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
||+|||+|.||.++|..|+..|+ +|.++|+++++++........ ....+++.+.+.+ .+++ +|+||++.+
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~-a~~~---aD~Vi~~ag 76 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSYE-DMRG---SDIVLVTAG 76 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGG-GGTT---CSEEEECCS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCHH-HhCC---CCEEEEeCC
Confidence 69999999999999999998888 699999998876542221100 0011355556653 3444 999999976
Q ss_pred CCh---------------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 82 AGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 82 ~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.+. .+++++..+.+.. ++.++|..||.
T Consensus 77 ~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP 118 (308)
T 2d4a_B 77 IGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTNP 118 (308)
T ss_dssp CCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence 542 1555666777664 66677777773
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00011 Score=73.69 Aligned_cols=102 Identities=12% Similarity=0.073 Sum_probs=65.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhccc--CCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE--GQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~--g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
+.+||+|||+|.+|.+++..|+..+. +|.++|+++++++......... -..++....+..+.+++ +|+||++.
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~---aDvVii~a 84 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKD---ADLVVITA 84 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGG---CSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCC---CCEEEEcC
Confidence 45799999999999999999998886 7999999988775533211100 00022232233444555 99999998
Q ss_pred CCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+.+. .++++.+.+..+ .++.+|+..||-.
T Consensus 85 g~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv 128 (326)
T 2zqz_A 85 GAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPV 128 (326)
T ss_dssp CCC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCcH
Confidence 6542 233344555555 4667777776643
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=3.2e-05 Score=79.98 Aligned_cols=95 Identities=21% Similarity=0.216 Sum_probs=65.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|+|||+|.||..+++.|...|. +|+++||++++.+++.+.... ......++.+++.. +|+||.++|.+..
T Consensus 168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~l~~~l~~---aDvVi~at~~~~~ 240 (404)
T 1gpj_A 168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG----EAVRFDELVDHLAR---SDVVVSATAAPHP 240 (404)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC----EECCGGGHHHHHHT---CSEEEECCSSSSC
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----ceecHHhHHHHhcC---CCEEEEccCCCCc
Confidence 579999999999999999999998 899999999987666654211 11112456666665 9999999987654
Q ss_pred HH--HHHHH-HHh-cCCCCCEEEecCC
Q 010702 86 VD--QTIAA-LSE-HMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~--~vl~~-l~~-~l~~g~iIId~st 108 (503)
+. +.+.. +++ .-.++.+++|.+.
T Consensus 241 ~~~~~~l~~~~lk~r~~~~~v~vdia~ 267 (404)
T 1gpj_A 241 VIHVDDVREALRKRDRRSPILIIDIAN 267 (404)
T ss_dssp CBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred eecHHHHHHHHHhccCCCCEEEEEccC
Confidence 32 33333 221 1134567777764
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0001 Score=73.58 Aligned_cols=101 Identities=11% Similarity=0.091 Sum_probs=64.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhccc--CCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE--GQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~--g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.+||+|||+|.+|.+++..|+..+. +|.++|+++++++......... -...+....+..+.+++ +|+||++.+
T Consensus 5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~---aDvVii~ag 81 (318)
T 1ez4_A 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKD---ADLVVITAG 81 (318)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTT---CSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCC---CCEEEECCC
Confidence 3689999999999999999998886 8999999988776433211100 00022222233333444 999999986
Q ss_pred CCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.+. .++++.+.+..+ .++.+|+..||-.
T Consensus 82 ~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv 124 (318)
T 1ez4_A 82 APQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPV 124 (318)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCcH
Confidence 532 233444555555 4677777776643
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.5e-05 Score=80.67 Aligned_cols=91 Identities=11% Similarity=0.130 Sum_probs=65.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeC-------------------------
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY------------------------- 61 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~------------------------- 61 (503)
.+|+|||+|.+|...++.+...|.+|+++|+++++.+.+.+.+. ....
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 245 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGA-------EFLELDFKEEAGSGDGYAKVMSDAFIKAE 245 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTC-------EECCC--------CCHHHHHHSHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCC-------EEEEecccccccccccchhhccHHHHHHH
Confidence 57999999999999999999999999999999998877655432 1111
Q ss_pred --CHHHHHhccCCCcEEEEe--cCCChhHHHHH-HHHHhcCCCCCEEEecCC
Q 010702 62 --TPRDFVLSIQRPRSVIIL--VKAGSPVDQTI-AALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 62 --s~~e~~~~l~~~dvIil~--vp~~~~v~~vl-~~l~~~l~~g~iIId~st 108 (503)
++++++.. +|+||.+ +|.. ....++ ++.+..+++|.+|||++.
T Consensus 246 ~~~l~e~~~~---aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~ 293 (401)
T 1x13_A 246 MELFAAQAKE---VDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAA 293 (401)
T ss_dssp HHHHHHHHHH---CSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTG
T ss_pred HHHHHHHhCC---CCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcC
Confidence 24455555 9999999 4421 111122 345566789999999885
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.82 E-value=7.8e-05 Score=78.40 Aligned_cols=116 Identities=10% Similarity=0.050 Sum_probs=78.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
+++|.|+|+|.+|+.++..|++. |++|++++|++++++++.+.... .... ..+.+++.+.++.+|+||.++|.
T Consensus 23 ~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~----~~~~~D~~d~~~l~~~l~~~DvVIn~tp~ 98 (467)
T 2axq_A 23 GKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGS----KAISLDVTDDSALDKVLADNDVVISLIPY 98 (467)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTC----EEEECCTTCHHHHHHHHHTSSEEEECSCG
T ss_pred CCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCC----cEEEEecCCHHHHHHHHcCCCEEEECCch
Confidence 45799999999999999999998 78999999999998888754110 1111 12333333323349999999997
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
... ..+... .+.+|..++|.+...+ ....+.+..++.|+.+++
T Consensus 99 ~~~-~~v~~a---~l~~g~~vvd~~~~~p-~~~~Ll~~Ak~aGv~~i~ 141 (467)
T 2axq_A 99 TFH-PNVVKS---AIRTKTDVVTSSYISP-ALRELEPEIVKAGITVMN 141 (467)
T ss_dssp GGH-HHHHHH---HHHHTCEEEECSCCCH-HHHHHHHHHHHHTCEEEC
T ss_pred hhh-HHHHHH---HHhcCCEEEEeecCCH-HHHHHHHHHHHcCCEEEe
Confidence 532 233332 2346788888765444 345666667777876664
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.82 E-value=3.2e-05 Score=75.53 Aligned_cols=114 Identities=14% Similarity=0.037 Sum_probs=78.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|+|+|.+|++++..|++.|. +|++++|++++.+++.+.... + ++.. .+.+++.. ..+|+||.++|.+..
T Consensus 121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~-~--~~~~-~~~~~l~~--~~~DivInaTp~gm~ 194 (272)
T 3pwz_A 121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH-S--RLRI-SRYEALEG--QSFDIVVNATSASLT 194 (272)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC-T--TEEE-ECSGGGTT--CCCSEEEECSSGGGG
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc-C--CeeE-eeHHHhcc--cCCCEEEECCCCCCC
Confidence 579999999999999999999996 899999999999988875321 0 1222 23344321 349999999997632
Q ss_pred HHH-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc-Eec
Q 010702 86 VDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL-YLG 130 (503)
Q Consensus 86 v~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~-~i~ 130 (503)
-+. .+. ...+.++.+|+|.... |..|. +.+..+++|+. .++
T Consensus 195 ~~~~~i~--~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~~~~~ 237 (272)
T 3pwz_A 195 ADLPPLP--ADVLGEAALAYELAYG-KGLTP-FLRLAREQGQARLAD 237 (272)
T ss_dssp TCCCCCC--GGGGTTCSEEEESSCS-CCSCH-HHHHHHHHSCCEEEC
T ss_pred CCCCCCC--HHHhCcCCEEEEeecC-CCCCH-HHHHHHHCCCCEEEC
Confidence 110 010 1346789999999765 44453 45566777765 443
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.82 E-value=8.6e-05 Score=77.64 Aligned_cols=108 Identities=14% Similarity=0.064 Sum_probs=73.2
Q ss_pred CCcEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCCh--hHHHHHHH---hh--cccCCCCeeeeCCHHHHHhccCC
Q 010702 6 LSRIGLAGLAVM-GQNLALNVAEK-----GFPISVYNRTT--SKVDETLD---RA--HREGQLPLTGHYTPRDFVLSIQR 72 (503)
Q Consensus 6 ~~~IgIIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~--~~~~~l~~---~~--~~~g~~~i~~~~s~~e~~~~l~~ 72 (503)
.+||+|||+|.+ |.+++..|+.+ +.+|.+||+++ ++++.... .. ......++..+.++.+.+++
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~g--- 83 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG--- 83 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCC---
Confidence 368999999999 88888888874 56899999999 87655221 11 00001146666788777776
Q ss_pred CcEEEEecCCCh-----------------------------------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHH
Q 010702 73 PRSVIILVKAGS-----------------------------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERR 117 (503)
Q Consensus 73 ~dvIil~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~ 117 (503)
+|+||++++.+. .+.++++.+.+. .|+.++|..||-....|...
T Consensus 84 AD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~-~P~a~ii~~tNPvdivT~a~ 162 (450)
T 1s6y_A 84 ADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTNPAGMVTEAV 162 (450)
T ss_dssp CSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHH
T ss_pred CCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeCCcHHHHHHHH
Confidence 999999998642 134444555554 47788888888654444333
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.81 E-value=4.7e-05 Score=73.01 Aligned_cols=85 Identities=18% Similarity=0.084 Sum_probs=60.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
|+||+|+|+|.||+.++..+.+.++++. ++|++++. .. ++..+++++++. . +|+||-+.++ .
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~-------gv~v~~dl~~l~-~---~DVvIDft~p-~ 65 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TT-------PYQQYQHIADVK-G---ADVAIDFSNP-N 65 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------C-------CSCBCSCTTTCT-T---CSEEEECSCH-H
T ss_pred ceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cC-------CCceeCCHHHHh-C---CCEEEEeCCh-H
Confidence 5799999999999999999998877655 57988762 11 355677888776 4 9999855543 2
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
.+.+.+ . +..|.-+|.++|+...
T Consensus 66 a~~~~~----~-l~~g~~vVigTTG~s~ 88 (243)
T 3qy9_A 66 LLFPLL----D-EDFHLPLVVATTGEKE 88 (243)
T ss_dssp HHHHHH----T-SCCCCCEEECCCSSHH
T ss_pred HHHHHH----H-HhcCCceEeCCCCCCH
Confidence 333333 2 6778777777777643
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.81 E-value=8.9e-05 Score=73.87 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=64.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHH----HHhhcccC-CCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDET----LDRAHREG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l----~~~~~~~g-~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|||+|||+|.||.++|..|+..|+ +|.++|+++++++.. .......+ ..++....+ .+.+++ +|+||++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~-~~a~~~---aDvVii~ 76 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTND-YGPTED---SDVCIIT 76 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESS-SGGGTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCC-HHHhCC---CCEEEEC
Confidence 689999999999999999999887 899999999876532 21110000 002333333 333444 9999999
Q ss_pred cCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
.+.+. .++++...+..+ .++.+|+..||-..
T Consensus 77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvd 122 (314)
T 3nep_X 77 AGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIVVANPLD 122 (314)
T ss_dssp CCC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECCSSHH
T ss_pred CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEecCCchh
Confidence 75431 123333455554 47788888887543
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.81 E-value=8.2e-05 Score=76.59 Aligned_cols=116 Identities=11% Similarity=-0.010 Sum_probs=81.1
Q ss_pred CcEEEEcccH---HHHHHHHHHHhCC-CcEE--EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhcc----CCCcEE
Q 010702 7 SRIGLAGLAV---MGQNLALNVAEKG-FPIS--VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSI----QRPRSV 76 (503)
Q Consensus 7 ~~IgIIGlG~---mG~~lA~~L~~~G-~~V~--v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l----~~~dvI 76 (503)
.||||||+|. ||...+..+...+ ++|. ++|+++++.+++.++.... ....+.|++++++.- .+.|+|
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~---~~~~~~~~~~ll~~~~~~~~~vD~V 89 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVD---SERCYADYLSMFEQEARRADGIQAV 89 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCC---GGGBCSSHHHHHHHHTTCTTCCSEE
T ss_pred ceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCC---cceeeCCHHHHHhcccccCCCCCEE
Confidence 4799999999 9999999888765 6765 6799999998887653210 015688999998741 248999
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCCEEEec--CCCChhhHHHHHHHHHhcCccEe
Q 010702 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDG--GNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~--st~~~~~t~~~~~~l~~~gi~~i 129 (503)
++|+|+....+-+...+. .|+-|+.- -+....+.+++.+..+++|+.+.
T Consensus 90 ~i~tp~~~H~~~~~~al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 140 (398)
T 3dty_A 90 SIATPNGTHYSITKAALE----AGLHVVCEKPLCFTVEQAENLRELSHKHNRIVG 140 (398)
T ss_dssp EEESCGGGHHHHHHHHHH----TTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEE
T ss_pred EECCCcHHHHHHHHHHHH----CCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 999999766554443333 45544432 23345677778777777776553
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00021 Score=70.69 Aligned_cols=105 Identities=9% Similarity=0.000 Sum_probs=79.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchh
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~ 404 (503)
.++++.+|+++|.+.++.|+.++|++.|.++ .++|.+++.++|+.|. .+|+.++........++..+.
T Consensus 167 ~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~------~Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~p~----- 234 (297)
T 4gbj_A 167 PGAANVIKLAGNFMIACSLEMMGEAFTMAEK------NGISRQSIYEMLTSTL-FAAPIFQNYGKLVASNTYEPV----- 234 (297)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TTCCHHHHHHHHHTTT-TCSHHHHHHHHHHHHTCCCSC-----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhhc-ccCchhhccCccccCCCCCCc-----
Confidence 3789999999999999999999999999885 3499999999999884 578888776555443321110
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010702 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (503)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~ 443 (503)
.|.-. -...+++-+...|-+.|+|+|....+..+|..
T Consensus 235 ~f~~~--l~~KDl~l~~~~A~~~g~~~p~~~~~~~~~~~ 271 (297)
T 4gbj_A 235 AFRFP--LGLKDINLTLQTASDVNAPMPFADIIRNRFIS 271 (297)
T ss_dssp SSBHH--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred cchhH--HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 12111 12345688899999999999999998886654
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00016 Score=71.91 Aligned_cols=98 Identities=12% Similarity=0.157 Sum_probs=63.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhcc----cCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHR----EGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~----~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|||+|||+|.+|.+++..|+..+ .+|.++|+++++++........ ....+++. .+ .+.++ .+|+||++.
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~~-~~a~~---~aD~Vii~a 75 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-GS-YGDLE---GARAVVLAA 75 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-CC-GGGGT---TEEEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-CC-HHHhC---CCCEEEECC
Confidence 58999999999999999999887 5899999998877643321111 00012332 33 33334 499999988
Q ss_pred CCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+.+. .++++.+.+.++ .++.+|+..||-.
T Consensus 76 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv 119 (310)
T 2xxj_A 76 GVAQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPV 119 (310)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred CCCCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEecCch
Confidence 6442 134444555555 4667777777643
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.72 E-value=6.9e-05 Score=73.62 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=78.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccC-CCCeeeeC--CHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREG-QLPLTGHY--TPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g-~~~i~~~~--s~~e~~~~l~~~dvIil~vp~ 82 (503)
+++.|+|+|.+|++++..|++.|. +|+++||++++.+++.+.....+ ...+...+ ++.+.+.+ +|+||.++|.
T Consensus 128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~---~DiVInaTp~ 204 (283)
T 3jyo_A 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAA---ADGVVNATPM 204 (283)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHH---SSEEEECSST
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhc---CCEEEECCCC
Confidence 579999999999999999999998 69999999999888765432100 01233333 66676666 9999999986
Q ss_pred ChhHHH--HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 83 GSPVDQ--TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 83 ~~~v~~--vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+-.-.. .+. ...++++.+|+|.--.. ..| .+.+..+++|...++
T Consensus 205 Gm~~~~~~pi~--~~~l~~~~~v~DlvY~P-~~T-~ll~~A~~~G~~~~~ 250 (283)
T 3jyo_A 205 GMPAHPGTAFD--VSCLTKDHWVGDVVYMP-IET-ELLKAARALGCETLD 250 (283)
T ss_dssp TSTTSCSCSSC--GGGCCTTCEEEECCCSS-SSC-HHHHHHHHHTCCEEC
T ss_pred CCCCCCCCCCC--HHHhCCCCEEEEecCCC-CCC-HHHHHHHHCcCeEeC
Confidence 521100 011 23577889999986543 334 334445666765543
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00021 Score=74.84 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=76.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee----eCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~----~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
++|.|+|+|.||+.++..|++.|++|.++||++++.+++.+... ++.. ..+.+++.+.++.+|+||.++|.
T Consensus 4 k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~-----~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~ 78 (450)
T 1ff9_A 4 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQ-----HSTPISLDVNDDAALDAEVAKHDLVISLIPY 78 (450)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCT-----TEEEEECCTTCHHHHHHHHTTSSEEEECCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcC-----CceEEEeecCCHHHHHHHHcCCcEEEECCcc
Confidence 57999999999999999999999999999999988877654311 1111 12334333333459999999987
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
.... .+... .+.+|..++|.+...+ .+.++.+.+++.|+.++.
T Consensus 79 ~~~~-~i~~a---~l~~g~~vvd~~~~~~-~~~~l~~aA~~aGv~~i~ 121 (450)
T 1ff9_A 79 TFHA-TVIKS---AIRQKKHVVTTSYVSP-AMMELDQAAKDAGITVMN 121 (450)
T ss_dssp -CHH-HHHHH---HHHHTCEEEESSCCCH-HHHHTHHHHHHTTCEEEC
T ss_pred ccch-HHHHH---HHhCCCeEEEeecccH-HHHHHHHHHHHCCCeEEe
Confidence 5332 23222 2345778888765444 445666777778887654
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=5.3e-05 Score=75.77 Aligned_cols=87 Identities=10% Similarity=0.260 Sum_probs=62.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCc-EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GFP-ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
++||+|||+|.||+.++..+.+. +++ |.++|+++++ .+. . ++..++++++++. ++|+|++|+|+.
T Consensus 3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-----~---gv~~~~d~~~ll~---~~DvViiatp~~ 69 (320)
T 1f06_A 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-----T---PVFDVADVDKHAD---DVDVLFLCMGSA 69 (320)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-----S---CEEEGGGGGGTTT---TCSEEEECSCTT
T ss_pred CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-----C---CCceeCCHHHHhc---CCCEEEEcCCcH
Confidence 35899999999999999999887 456 4588998664 221 1 3555677777664 499999999987
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
...+.+. ..+..|..|++....
T Consensus 70 ~h~~~~~----~al~aG~~Vv~ekp~ 91 (320)
T 1f06_A 70 TDIPEQA----PKFAQFACTVDTYDN 91 (320)
T ss_dssp THHHHHH----HHHTTTSEEECCCCC
T ss_pred HHHHHHH----HHHHCCCEEEECCCC
Confidence 5544433 345568878876654
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00033 Score=70.54 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=65.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHHHH----HHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKVDE----TLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
++||+|||+ |.+|.++|..++..|. +|.++|++.++++. +... ... ..++....+..+.+++ +|+||+
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~-~~~-~~~i~~t~d~~~al~d---ADvVvi 82 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC-GFE-GLNLTFTSDIKEALTD---AKYIVS 82 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHH-CCT-TCCCEEESCHHHHHTT---EEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhC-cCC-CCceEEcCCHHHHhCC---CCEEEE
Confidence 468999998 9999999999999984 89999999887654 2221 111 0145666777777776 999999
Q ss_pred ecCCC---------------hhHHHHHHHHHhcCCCCC-EEEecCCC
Q 010702 79 LVKAG---------------SPVDQTIAALSEHMSPGD-CIIDGGNE 109 (503)
Q Consensus 79 ~vp~~---------------~~v~~vl~~l~~~l~~g~-iIId~st~ 109 (503)
+...+ ..++++.+.+.... ++. +|+..||-
T Consensus 83 taG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~-p~a~~vlvvsNP 128 (343)
T 3fi9_A 83 SGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYC-PDCKHVIIIFNP 128 (343)
T ss_dssp CCC-------CHHHHHHHHHHHHHHHHHHHHHHC-TTCCEEEECSSS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-cCcEEEEEecCc
Confidence 86322 11233335555555 455 46777764
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.71 E-value=5.5e-05 Score=75.85 Aligned_cols=125 Identities=15% Similarity=0.177 Sum_probs=76.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC---------CCcEE-EEeCChhHHH-----H-HHHhhcccCCCCeeeeC--CHHHHH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK---------GFPIS-VYNRTTSKVD-----E-TLDRAHREGQLPLTGHY--TPRDFV 67 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~---------G~~V~-v~dr~~~~~~-----~-l~~~~~~~g~~~i~~~~--s~~e~~ 67 (503)
|+||||||+|.||+.++..|.++ +.+|. ++|+++.+.+ + +...... ...++ ++++++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~-----~~~~~~~d~~~ll 76 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRET-----GMLRDDAKAIEVV 76 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHH-----SSCSBCCCHHHHH
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccC-----ccccCCCCHHHHh
Confidence 46999999999999999999875 45544 6788865422 1 2111100 12334 899998
Q ss_pred hccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChh-hHHHHHHHHHhcCccEe-cccCCCC
Q 010702 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYL-GMGVSGG 136 (503)
Q Consensus 68 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~-~t~~~~~~l~~~gi~~i-~~pvsgg 136 (503)
++ .+.|+|+.|+|+....-+..+-....+..|.-|+..+..... ...++.+..+++|+.|+ ++-+.+|
T Consensus 77 ~~-~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~~ea~v~~g 146 (327)
T 3do5_A 77 RS-ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGA 146 (327)
T ss_dssp HH-SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEECGGGSSTT
T ss_pred cC-CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEEEEEEeeec
Confidence 75 348999999998643111334445567788888876543222 23445555566777654 5555544
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0004 Score=72.07 Aligned_cols=143 Identities=14% Similarity=0.125 Sum_probs=88.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCc-EEEEeCChhHHHHHHHh--hc-----------------ccCCCCeeeeCCHH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GFP-ISVYNRTTSKVDETLDR--AH-----------------REGQLPLTGHYTPR 64 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~~-V~v~dr~~~~~~~l~~~--~~-----------------~~g~~~i~~~~s~~ 64 (503)
..||||||+|.||+.++..+.+. +.+ +.++|+++++.+++.++ +. ..+ ....+++.+
T Consensus 23 ~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g--~~~v~~D~e 100 (446)
T 3upl_A 23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAG--KIAVTDDND 100 (446)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTT--CEEEESCHH
T ss_pred ceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccC--CceEECCHH
Confidence 35899999999999999888754 455 45789999998887653 20 000 245788999
Q ss_pred HHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhh---HHHHHHHHHhcCccEecccCCCChhhhh
Q 010702 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN---TERRIHEASQKGLLYLGMGVSGGEEGAR 141 (503)
Q Consensus 65 e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~---t~~~~~~l~~~gi~~i~~pvsgg~~~a~ 141 (503)
+++++ +..|+|++++|....-. +-....+..|+-|+.... +.+ ..++.+..+++|+.|.-
T Consensus 101 eLL~d-~dIDaVviaTp~p~~H~---e~a~~AL~AGKHVv~~nk--~l~~~eg~eL~~~A~e~Gvvl~~----------- 163 (446)
T 3upl_A 101 LILSN-PLIDVIIDATGIPEVGA---ETGIAAIRNGKHLVMMNV--EADVTIGPYLKAQADKQGVIYSL----------- 163 (446)
T ss_dssp HHHTC-TTCCEEEECSCCHHHHH---HHHHHHHHTTCEEEECCH--HHHHHHHHHHHHHHHHHTCCEEE-----------
T ss_pred HHhcC-CCCCEEEEcCCChHHHH---HHHHHHHHcCCcEEecCc--ccCHHHHHHHHHHHHHhCCeeee-----------
Confidence 99874 34799999998742212 222334556777774332 222 23444444555654432
Q ss_pred cCCcccCCCC-HHHHHHHHHHHHHHhcccCCCCcEEEeC
Q 010702 142 HGPSLMPGGS-FEAYNNIRDILQKVAAQVDDGPCVTYIG 179 (503)
Q Consensus 142 ~G~~i~~gg~-~~a~~~v~~ll~~ig~~~~~~~~v~~~G 179 (503)
..|+ +...-.+-.+.+.+| ..++.+|
T Consensus 164 ------~~gdqp~~~~eLv~~a~~~G------~~~v~~G 190 (446)
T 3upl_A 164 ------GAGDEPSSCMELIEFVSALG------YEVVSAG 190 (446)
T ss_dssp ------CTTSHHHHHHHHHHHHHHTT------CEEEEEE
T ss_pred ------cCCcchHHHHHHHHHHHhCC------CeEEEec
Confidence 1233 333445556667777 5666666
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.67 E-value=9.5e-05 Score=75.19 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=68.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.+|.|+|+|.+|...++.+...|.+|+++||++++.+.+.+.+... + ....+.+++.+.+..+|+||.+++.+..
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~ 243 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR----VELLYSNSAEIETAVAEADLLIGAVLVPGR 243 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG----SEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCce----eEeeeCCHHHHHHHHcCCCEEEECCCcCCC
Confidence 5799999999999999999999999999999999988877654321 1 1122333333333349999999865421
Q ss_pred -HHH-HHHHHHhcCCCCCEEEecCCC
Q 010702 86 -VDQ-TIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 -v~~-vl~~l~~~l~~g~iIId~st~ 109 (503)
... +.+...+.++++.+|+|.+..
T Consensus 244 ~~~~li~~~~~~~~~~g~~ivdv~~~ 269 (361)
T 1pjc_A 244 RAPILVPASLVEQMRTGSVIVDVAVD 269 (361)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred CCCeecCHHHHhhCCCCCEEEEEecC
Confidence 000 123445667788899998753
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00026 Score=72.30 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=78.5
Q ss_pred CcEEEEc-ccHHHHH-HH----HHHHhCC-CcE----------EEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHh
Q 010702 7 SRIGLAG-LAVMGQN-LA----LNVAEKG-FPI----------SVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVL 68 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~-lA----~~L~~~G-~~V----------~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~~~ 68 (503)
+|||||| +|.||.. .+ ..+.+.+ ..+ .++|+++++.+++.+.. ++ ..+++++++++
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~------~~~~~~~~~~~ll~ 80 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRF------NIARWTTDLDAALA 80 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHT------TCCCEESCHHHHHH
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHh------CCCcccCCHHHHhc
Confidence 5899999 9999998 66 6666554 222 49999999998887653 23 46789999997
Q ss_pred ccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecC--CCChhhHHHHHHHHHhcCccEe
Q 010702 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGG--NEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~s--t~~~~~t~~~~~~l~~~gi~~i 129 (503)
+ ++.|+|++++|+....+-+... +..|+-|+.-- .....+.+++.+..+++|+.+.
T Consensus 81 ~-~~iD~V~i~tp~~~h~~~~~~a----l~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~~ 138 (383)
T 3oqb_A 81 D-KNDTMFFDAATTQARPGLLTQA----INAGKHVYCEKPIATNFEEALEVVKLANSKGVKHG 138 (383)
T ss_dssp C-SSCCEEEECSCSSSSHHHHHHH----HTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred C-CCCCEEEECCCchHHHHHHHHH----HHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 5 3479999999987665444333 34565555321 3345677777777777776543
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00033 Score=70.18 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=67.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHh---hc-ccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR---AH-REGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~---~~-~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
.+||+|||+|.||.++|..|+.+|+ +|.++|+++++++..... .. ......+....++++ ++ ++|+||++
T Consensus 19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~-~~---~aDiVvi~ 94 (331)
T 4aj2_A 19 QNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSV-TA---NSKLVIIT 94 (331)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGG-GT---TEEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHH-hC---CCCEEEEc
Confidence 4689999999999999999999997 899999998876553221 10 000002344556654 33 39999998
Q ss_pred cCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
...+. .++++.+.+..+ .++.+++..||-.
T Consensus 95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPv 139 (331)
T 4aj2_A 95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVSNPV 139 (331)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChH
Confidence 63221 234444566665 5778888888743
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00027 Score=70.65 Aligned_cols=101 Identities=12% Similarity=0.078 Sum_probs=65.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhccc-CC-CCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHRE-GQ-LPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~-g~-~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.+||+|||+|.||.++|..|+..|+ +|.++|+++++++.....-... .. .++....+..+.+++ +|+||++..
T Consensus 9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~---aDiVvi~ag 85 (326)
T 3vku_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKD---ADLVVITAG 85 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTT---CSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcC---CCEEEECCC
Confidence 4689999999999999999999987 8999999998776332211000 00 023333333333444 999999874
Q ss_pred CCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.+. .++++.+.+..+ .++.+|+..||-.
T Consensus 86 ~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~ilvvtNPv 128 (326)
T 3vku_A 86 APQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPV 128 (326)
T ss_dssp CC----------------CHHHHHHHHHTT-TCCSEEEECSSSH
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEccCch
Confidence 321 133444555554 4677888887743
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00018 Score=72.05 Aligned_cols=98 Identities=11% Similarity=0.104 Sum_probs=62.3
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCC--CcEEEEeCChhH--HHHHHHhhcccCCCCeee---eCCHHHHHhccCCCcEE
Q 010702 5 ALSRIGLAG-LAVMGQNLALNVAEKG--FPISVYNRTTSK--VDETLDRAHREGQLPLTG---HYTPRDFVLSIQRPRSV 76 (503)
Q Consensus 5 ~~~~IgIIG-lG~mG~~lA~~L~~~G--~~V~v~dr~~~~--~~~l~~~~~~~g~~~i~~---~~s~~e~~~~l~~~dvI 76 (503)
++|||+||| +|.+|.+++..|+..| ++|.++|++++. ..++..... . ..+.. .+++.+++++ +|+|
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~-~--~~v~~~~~t~d~~~al~g---aDvV 80 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDT-G--AVVRGFLGQQQLEAALTG---MDLI 80 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCS-S--CEEEEEESHHHHHHHHTT---CSEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccc-c--ceEEEEeCCCCHHHHcCC---CCEE
Confidence 457999999 8999999999999999 789999988762 122222110 0 01333 2244555555 9999
Q ss_pred EEecCCC---------------hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 77 IILVKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 77 il~vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
|++.+.+ ..++++++.+.+.- +..+|+..||.
T Consensus 81 i~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~SNP 127 (326)
T 1smk_A 81 IVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLISNP 127 (326)
T ss_dssp EECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSS
T ss_pred EEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCc
Confidence 9998532 12444455555544 55666666653
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00023 Score=71.01 Aligned_cols=114 Identities=12% Similarity=-0.054 Sum_probs=78.1
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--------ccCCCcE
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--------SIQRPRS 75 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--------~l~~~dv 75 (503)
|+||||||+ |.||...+..|.+.|.++ .++|+++++. .+.+... ....+.+++++.+ +-++.|+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~-----~~~~~~~~~~ll~~~~~l~~~~~~~vD~ 76 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISP-----QSEFFTEFEFFLDHASNLKRDSATALDY 76 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCT-----TCEEESSHHHHHHHHHHHTTSTTTSCCE
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCC-----CCcEECCHHHHHHhhhhhhhccCCCCcE
Confidence 579999999 799999999999988764 5789998762 2222211 3577889999873 1145899
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEe
Q 010702 76 VIILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i 129 (503)
|++++|+....+-+...+. .|+ ++++- -+....+.+++.+..+++|+.+.
T Consensus 77 V~I~tP~~~H~~~~~~al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 128 (318)
T 3oa2_A 77 VSICSPNYLHYPHIAAGLR----LGCDVICEKPLVPTPEMLDQLAVIERETDKRLY 128 (318)
T ss_dssp EEECSCGGGHHHHHHHHHH----TTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEE
T ss_pred EEECCCcHHHHHHHHHHHH----CCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 9999999766554444433 344 44442 13455677777777777776544
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00015 Score=71.39 Aligned_cols=111 Identities=17% Similarity=0.052 Sum_probs=77.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCC
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~ 82 (503)
.+||+|+|+ |.||..+++++.+.|++ .++..+|.+.. +. .. ++..+.|++++.+ . +|++++++|+
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~~-~v~~VnP~~~g---~~--i~---G~~vy~sl~el~~~~~---~Dv~Ii~vp~ 74 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGTK-IVAGVTPGKGG---ME--VL---GVPVYDTVKEAVAHHE---VDASIIFVPA 74 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CE--ET---TEEEESSHHHHHHHSC---CSEEEECCCH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCCe-EEEEECCCCCC---ce--EC---CEEeeCCHHHHhhcCC---CCEEEEecCH
Confidence 468999998 99999999999999998 44555554310 00 11 4678899999987 5 9999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChh-hHHHHHHHHHhcCccEecc
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~-~t~~~~~~l~~~gi~~i~~ 131 (503)
. .+.+++++....- - ..++-.+++.+. +.+++.+..++.|+.+++.
T Consensus 75 ~-~~~~~~~ea~~~G-i-~~vVi~t~G~~~~~~~~l~~~a~~~gi~vigP 121 (288)
T 1oi7_A 75 P-AAADAALEAAHAG-I-PLIVLITEGIPTLDMVRAVEEIKALGSRLIGG 121 (288)
T ss_dssp H-HHHHHHHHHHHTT-C-SEEEECCSCCCHHHHHHHHHHHHHHTCEEEES
T ss_pred H-HHHHHHHHHHHCC-C-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 4 6777777666531 2 223435555443 3456667777788887754
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=8.2e-05 Score=76.35 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=64.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeC--------------C----------
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY--------------T---------- 62 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~--------------s---------- 62 (503)
.+|+|||+|.+|...++.+...|.+|+++|+++++.+.+.+.+...- .+.... +
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~--~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 250 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFI--TVDDEAMKTAETAGGYAKEMGEEFRKKQAEA 250 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEEC--CC-----------------------CCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEE--eecccccccccccccchhhcCHHHHhhhHHH
Confidence 57999999999999999999999999999999988777655432100 000000 0
Q ss_pred HHHHHhccCCCcEEEEecCCC-hhHHHHH-HHHHhcCCCCCEEEecCC
Q 010702 63 PRDFVLSIQRPRSVIILVKAG-SPVDQTI-AALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 63 ~~e~~~~l~~~dvIil~vp~~-~~v~~vl-~~l~~~l~~g~iIId~st 108 (503)
+.+++. .+|+||.+++.+ .....++ .+.+..+++|.+|+|.+.
T Consensus 251 l~~~~~---~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~ 295 (384)
T 1l7d_A 251 VLKELV---KTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAV 295 (384)
T ss_dssp HHHHHT---TCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred HHHHhC---CCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEec
Confidence 333443 499999888221 1111122 445566788999999873
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00017 Score=74.59 Aligned_cols=120 Identities=17% Similarity=0.107 Sum_probs=74.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC---CcEEEEeCChhHHHHHHHhhcccCCCCeee-------eCCHHHHHhccCCCcE
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG---FPISVYNRTTSKVDETLDRAHREGQLPLTG-------HYTPRDFVLSIQRPRS 75 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-------~~s~~e~~~~l~~~dv 75 (503)
|++|+|||+|.+|+.++..|+++| .+|.+++|++++.+++.+.....+..++.. ..+++++++.. ++|+
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~-~~Dv 79 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV-KPQI 79 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH-CCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh-CCCE
Confidence 368999999999999999999998 389999999999888776422100001111 11233444321 2799
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChh--------hHHHHHHHHHhcCccEec
Q 010702 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL--------NTERRIHEASQKGLLYLG 130 (503)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~--------~t~~~~~~l~~~gi~~i~ 130 (503)
||.+.+... -..+++.. +..|..++|.++..+. ...++.+.+++.|+.++.
T Consensus 80 Vin~ag~~~-~~~v~~a~---l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~ 138 (405)
T 4ina_A 80 VLNIALPYQ-DLTIMEAC---LRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALL 138 (405)
T ss_dssp EEECSCGGG-HHHHHHHH---HHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEE
T ss_pred EEECCCccc-ChHHHHHH---HHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEE
Confidence 999988643 33344333 3357778887554332 123455556666766543
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00022 Score=70.62 Aligned_cols=109 Identities=16% Similarity=0.041 Sum_probs=77.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcc--
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVV-- 402 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~-- 402 (503)
.++++.+|+++|.+.++.|+.++|++.|.++. ++|.+.+.++++.|. -+|+.++........ ..+...
T Consensus 166 ~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~------Gld~~~~~~vl~~~~-~~s~~~~~~~p~~~~---~~~~~~~~ 235 (300)
T 3obb_A 166 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVAN------GLEAKVLAEIMRRSS-GGNWALEVYNPWPGV---MENAPASR 235 (300)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHTST-TCCHHHHHCCCSTTT---STTSGGGG
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHhCc-ccchHHHhhccccch---hhhccccc
Confidence 37899999999999999999999999998853 399999999999874 467766532110000 001111
Q ss_pred --hhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010702 403 --DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (503)
Q Consensus 403 --~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (503)
++.|.-. -...+++.++..|.+.|+|+|..+.+..+|....
T Consensus 236 ~~~~~f~~~--l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a~ 278 (300)
T 3obb_A 236 DYSGGFMAQ--LMAKDLGLAQEAAQASASSTPMGSLALSLYRLLL 278 (300)
T ss_dssp TTCSSSBHH--HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred cCCccchHH--HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 1222222 2244668889999999999999999988776443
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00034 Score=69.71 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=63.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCC--CcEEEEeCChhHHH--HHHHhhcccCCCCeeee---CCHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKG--FPISVYNRTTSKVD--ETLDRAHREGQLPLTGH---YTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~--~l~~~~~~~g~~~i~~~---~s~~e~~~~l~~~dvIil 78 (503)
|||+|||+ |.+|.+++..|+..| .+|.++|+++.... ++.. .... .++... +++++++++ +|+||+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~-~~~~--~~l~~~~~t~d~~~a~~~---aDvVvi 74 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSH-IETR--ATVKGYLGPEQLPDCLKG---CDVVVI 74 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTT-SSSS--CEEEEEESGGGHHHHHTT---CSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhc-cCcC--ceEEEecCCCCHHHHhCC---CCEEEE
Confidence 58999998 999999999999988 68999999872211 1211 1111 023332 457776666 999999
Q ss_pred ecCCC---------------hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 79 LVKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 79 ~vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+...+ ..++++++.+.+.. ++.+|+..||-
T Consensus 75 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~sNP 119 (314)
T 1mld_A 75 PAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNP 119 (314)
T ss_dssp CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSC
T ss_pred CCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCC
Confidence 97432 23455556666655 55566667663
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00042 Score=72.12 Aligned_cols=118 Identities=18% Similarity=0.265 Sum_probs=76.3
Q ss_pred CcEEEEcccHHHHHHHHHHHh----------CCCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcE
Q 010702 7 SRIGLAGLAVMGQNLALNVAE----------KGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRS 75 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~----------~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dv 75 (503)
.+|||||+|.||+.++..|.+ .+.+| .++||++++.+.+.. ....++++++++++ .+.|+
T Consensus 11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~--------~~~~~~d~~ell~d-~diDv 81 (444)
T 3mtj_A 11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAG--------GLPLTTNPFDVVDD-PEIDI 81 (444)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHT--------TCCEESCTHHHHTC-TTCCE
T ss_pred ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcc--------cCcccCCHHHHhcC-CCCCE
Confidence 379999999999999987764 23444 478999988766532 13567899999875 34799
Q ss_pred EEEecCCChhHHHHHHHHHhcCCCCCEEEecCCC-ChhhHHHHHHHHHhcCccE-ecccCCCC
Q 010702 76 VIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE-WYLNTERRIHEASQKGLLY-LGMGVSGG 136 (503)
Q Consensus 76 Iil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~-~~~~t~~~~~~l~~~gi~~-i~~pvsgg 136 (503)
|++++|....-.+.+. ..|..|.-|+..... ......++.+..+++|+.| +.+.+.+|
T Consensus 82 Vve~tp~~~~h~~~~~---~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~g 141 (444)
T 3mtj_A 82 VVELIGGLEPARELVM---QAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGG 141 (444)
T ss_dssp EEECCCSSTTHHHHHH---HHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSSTT
T ss_pred EEEcCCCchHHHHHHH---HHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeCC
Confidence 9999996323333332 334567777754331 1112344555566678877 45555554
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00025 Score=70.53 Aligned_cols=114 Identities=15% Similarity=0.056 Sum_probs=77.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh-------ccCCCcEE
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL-------SIQRPRSV 76 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~-------~l~~~dvI 76 (503)
|+||||||+ |.||...+..+.+.+.+| .++|+++++. .+.+... ....+.+.+++.+ +-++.|+|
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~-----~~~~~~~~~~ll~~~~~l~~~~~~vD~V 76 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG-LVDSFFP-----EAEFFTEPEAFEAYLEDLRDRGEGVDYL 76 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCT-----TCEEESCHHHHHHHHHHHHHTTCCCSEE
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCC-----CCceeCCHHHHHHHhhhhcccCCCCcEE
Confidence 569999999 789999999999988774 5889998863 2222211 3577889999882 11458999
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCCEEE-ec-CCCChhhHHHHHHHHHhcCccEe
Q 010702 77 IILVKAGSPVDQTIAALSEHMSPGDCII-DG-GNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iII-d~-st~~~~~t~~~~~~l~~~gi~~i 129 (503)
++|+|+....+-+...+ ..|+-|+ +- -+....+.+++.+..+++|+.+.
T Consensus 77 ~I~tP~~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 127 (312)
T 3o9z_A 77 SIASPNHLHYPQIRMAL----RLGANALSEKPLVLWPEEIARLKELEARTGRRVY 127 (312)
T ss_dssp EECSCGGGHHHHHHHHH----HTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEE
T ss_pred EECCCchhhHHHHHHHH----HCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 99999976655444433 3454444 32 13345677777777777776553
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00029 Score=69.47 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=77.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~~ 83 (503)
.+|.|+|+ |.||..+++++.+.|++ .++..+|.+.. +. .. ++..+.|++++.+ . +|++++++|+.
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g---~~--i~---G~~vy~sl~el~~~~~---~Dv~ii~vp~~ 81 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGG---QN--VH---GVPVFDTVKEAVKETD---ANASVIFVPAP 81 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTT---CE--ET---TEEEESSHHHHHHHHC---CCEEEECCCHH
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCC---ce--EC---CEeeeCCHHHHhhcCC---CCEEEEccCHH
Confidence 46888898 99999999999999999 66676765320 00 01 4678899999987 6 99999999985
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChh-hHHHHHHHHHhcCccEecc
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~-~t~~~~~~l~~~gi~~i~~ 131 (503)
.+.+++++....= . ..++..++..+. +..++.+.+++.|+.+++.
T Consensus 82 -~~~~~v~ea~~~G-i-~~vVi~t~G~~~~~~~~l~~~A~~~gi~viGP 127 (294)
T 2yv1_A 82 -FAKDAVFEAIDAG-I-ELIVVITEHIPVHDTMEFVNYAEDVGVKIIGP 127 (294)
T ss_dssp -HHHHHHHHHHHTT-C-SEEEECCSCCCHHHHHHHHHHHHHHTCEEECS
T ss_pred -HHHHHHHHHHHCC-C-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEcC
Confidence 6677777666531 2 224444555443 4456677777788887754
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00026 Score=69.76 Aligned_cols=115 Identities=14% Similarity=0.082 Sum_probs=76.6
Q ss_pred CCcC-CCCcEEEEcccHHHHHHHHHHHh----CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCc
Q 010702 1 MEAS-ALSRIGLAGLAVMGQNLALNVAE----KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 1 M~~~-~~~~IgIIGlG~mG~~lA~~L~~----~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~d 74 (503)
|... +++||||||+|.||...+..+.+ .++++. ++|++.. .+. . ++. ..++++++++ ++.|
T Consensus 1 M~~~~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~-----a~~---~---g~~-~~~~~ell~~-~~vD 67 (294)
T 1lc0_A 1 MITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-----GSL---D---EVR-QISLEDALRS-QEID 67 (294)
T ss_dssp CCCCCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-----CEE---T---TEE-BCCHHHHHHC-SSEE
T ss_pred CCCCCCcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH-----HHH---c---CCC-CCCHHHHhcC-CCCC
Confidence 5433 34689999999999999988865 355644 7888641 111 1 233 5799999873 2379
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccEeccc
Q 010702 75 SVIILVKAGSPVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
+|++++|+....+.+...+ ..|+ ++++- -+....+.+++.+..+++|+.+..+.
T Consensus 68 ~V~i~tp~~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~ 123 (294)
T 1lc0_A 68 VAYICSESSSHEDYIRQFL----QAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEH 123 (294)
T ss_dssp EEEECSCGGGHHHHHHHHH----HTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEeCCcHhHHHHHHHHH----HCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999999876655444333 3455 55553 34456777888888888887665543
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00037 Score=69.88 Aligned_cols=107 Identities=9% Similarity=0.098 Sum_probs=73.7
Q ss_pred CcEEEEcccHHHH-HHHHHHHhC-CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQ-NLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~-~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+||||||+|.||. ..+..|.+. +++| .++|+++++ . ++..+.+++++++..++.|+|++++|+.
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~-------g~~~~~~~~~ll~~~~~vD~V~i~tp~~ 92 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------E-------GVNSYTTIEAMLDAEPSIDAVSLCMPPQ 92 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------T-------TSEEESSHHHHHHHCTTCCEEEECSCHH
T ss_pred ceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------c-------CCCccCCHHHHHhCCCCCCEEEEeCCcH
Confidence 4899999999998 788888876 5665 578998653 1 3567899999987545689999999986
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecC--CCChhhHHHHHHHHHhcCccEec
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGG--NEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~s--t~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
...+-+... +..|+-|+.-- .....+.+++.+..+++|+.+..
T Consensus 93 ~H~~~~~~a----l~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v 137 (330)
T 4ew6_A 93 YRYEAAYKA----LVAGKHVFLEKPPGATLSEVADLEALANKQGASLFA 137 (330)
T ss_dssp HHHHHHHHH----HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHH----HHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEE
Confidence 544333333 33455544321 23456677777777777775543
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00012 Score=71.99 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=73.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC--C--CCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG--Q--LPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g--~--~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
+++.|+|+|.||.++|..|++.| +|+++||++++.+++.+.....+ . ..+... +. .+.+.++|+||.+++.
T Consensus 129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~-~~---~~~~~~~DilVn~ag~ 203 (287)
T 1nvt_A 129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFS-GL---DVDLDGVDIIINATPI 203 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEE-CT---TCCCTTCCEEEECSCT
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEe-eH---HHhhCCCCEEEECCCC
Confidence 57999999999999999999999 99999999998877765321100 0 001111 22 2334459999999986
Q ss_pred ChhH--HHH-HHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 83 GSPV--DQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 83 ~~~v--~~v-l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
+..- +.. +. -...+.++.+++|.+.. |..+ ++.+..+++|..++
T Consensus 204 ~~~~~~~~~~~~-~~~~l~~~~~v~Dv~y~-p~~t-~ll~~a~~~G~~~~ 250 (287)
T 1nvt_A 204 GMYPNIDVEPIV-KAEKLREDMVVMDLIYN-PLET-VLLKEAKKVNAKTI 250 (287)
T ss_dssp TCTTCCSSCCSS-CSTTCCSSSEEEECCCS-SSSC-HHHHHHHTTTCEEE
T ss_pred CCCCCCCCCCCC-CHHHcCCCCEEEEeeeC-CccC-HHHHHHHHCCCEEe
Confidence 5320 000 10 02356789999999874 4444 34455566676544
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0003 Score=66.63 Aligned_cols=112 Identities=9% Similarity=0.029 Sum_probs=72.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee-CCHHHHHh-ccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH-YTPRDFVL-SIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~-~s~~e~~~-~l~~~dvIil~vp~~ 83 (503)
.++|.|+|+|.+|..++..|.+.|+ |+++|+++++++.+. .+.. -+... .+.+.+.+ .++.+|.||++++++
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~----~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 82 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGAN----FVHGDPTRVSDLEKANVRGARAVIVDLESD 82 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCE----EEESCTTCHHHHHHTTCTTCSEEEECCSCH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCe----EEEcCCCCHHHHHhcCcchhcEEEEcCCCc
Confidence 3579999999999999999999999 999999999887776 3321 01221 23333322 366799999999885
Q ss_pred hhHHHHHHHHHhcCCCC-CEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 84 SPVDQTIAALSEHMSPG-DCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g-~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
. ....+......+.++ .+|+..++.. .. ..+...|+..+=
T Consensus 83 ~-~n~~~~~~a~~~~~~~~iia~~~~~~--~~----~~l~~~G~~~vi 123 (234)
T 2aef_A 83 S-ETIHCILGIRKIDESVRIIAEAERYE--NI----EQLRMAGADQVI 123 (234)
T ss_dssp H-HHHHHHHHHHHHCSSSEEEEECSSGG--GH----HHHHHHTCSEEE
T ss_pred H-HHHHHHHHHHHHCCCCeEEEEECCHh--HH----HHHHHCCCCEEE
Confidence 3 333333334445555 6777765543 22 233345766543
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00014 Score=73.03 Aligned_cols=116 Identities=7% Similarity=-0.044 Sum_probs=73.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~-v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|++||||||+|.+|...+..| ..+.+|. ++|+++ ++.+++.+.....+ .....++|+++++++ ++.|+|++++|+
T Consensus 1 M~~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~-~~vD~V~I~tp~ 77 (337)
T 3ip3_A 1 MSLKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMN-IKPKKYNNWWEMLEK-EKPDILVINTVF 77 (337)
T ss_dssp -CEEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTT-CCCEECSSHHHHHHH-HCCSEEEECSSH
T ss_pred CceEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcC-CCCcccCCHHHHhcC-CCCCEEEEeCCc
Confidence 457999999999998888777 6677765 789987 34444433211110 113678999999874 347999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEE-ec-CCCChhhHHHHHHHHHhcCcc
Q 010702 83 GSPVDQTIAALSEHMSPGDCII-DG-GNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iII-d~-st~~~~~t~~~~~~l~~~gi~ 127 (503)
....+-+...+ ..|+-|+ +- -+....+.+++.+..++.|..
T Consensus 78 ~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~ 120 (337)
T 3ip3_A 78 SLNGKILLEAL----ERKIHAFVEKPIATTFEDLEKIRSVYQKVRNE 120 (337)
T ss_dssp HHHHHHHHHHH----HTTCEEEECSSSCSSHHHHHHHHHHHHHHTTT
T ss_pred chHHHHHHHHH----HCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCc
Confidence 65544443333 3454444 31 123345677777777777764
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00028 Score=69.16 Aligned_cols=109 Identities=12% Similarity=0.049 Sum_probs=74.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|+|+|.+|++++..|++.|. +|++++|++++.+++.+.. . ..+.+++.+ + .+|+||.++|.+-.
T Consensus 123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~--------~-~~~~~~l~~-l-~~DivInaTp~Gm~ 191 (282)
T 3fbt_A 123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEF--------K-VISYDELSN-L-KGDVIINCTPKGMY 191 (282)
T ss_dssp SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTS--------E-EEEHHHHTT-C-CCSEEEECSSTTST
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhc--------C-cccHHHHHh-c-cCCEEEECCccCcc
Confidence 579999999999999999999998 8999999999988876532 1 123344433 4 59999999987521
Q ss_pred --HHH-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 86 --VDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 86 --v~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
.+. .+. ...++++.+|+|..-.. ..| .+.+..+++|...++
T Consensus 192 ~~~~~~pi~--~~~l~~~~~v~DlvY~P-~~T-~ll~~A~~~G~~~~~ 235 (282)
T 3fbt_A 192 PKEGESPVD--KEVVAKFSSAVDLIYNP-VET-LFLKYARESGVKAVN 235 (282)
T ss_dssp TSTTCCSSC--HHHHTTCSEEEESCCSS-SSC-HHHHHHHHTTCEEEC
T ss_pred CCCccCCCC--HHHcCCCCEEEEEeeCC-CCC-HHHHHHHHCcCeEeC
Confidence 010 010 12246789999986543 333 344555667766554
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00039 Score=69.17 Aligned_cols=121 Identities=14% Similarity=0.177 Sum_probs=76.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC---hhHHHHHHHhhcccCCCCee--eeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT---TSKVDETLDRAHREGQLPLT--GHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~---~~~~~~l~~~~~~~g~~~i~--~~~s~~e~~~~l~~~dvIil~v 80 (503)
+++.|+|+|-+|++++..|++.|. +|++++|+ .++.+++.+.........+. ..++.+++.+.+..+|+||-++
T Consensus 155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaT 234 (315)
T 3tnl_A 155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNAT 234 (315)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECc
Confidence 479999999999999999999998 89999999 88888776542211000122 2233333332233499999999
Q ss_pred CCChhHH--H-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 81 KAGSPVD--Q-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 81 p~~~~v~--~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
|.+-.-. . .+. ....++++.+|+|..-.. ..| .+.+..+++|...++
T Consensus 235 p~Gm~~~~~~~p~~-~~~~l~~~~~V~DlvY~P-~~T-~ll~~A~~~G~~~~~ 284 (315)
T 3tnl_A 235 GVGMKPFEGETLLP-SADMLRPELIVSDVVYKP-TKT-RLLEIAEEQGCQTLN 284 (315)
T ss_dssp STTSTTSTTCCSCC-CGGGCCTTCEEEESCCSS-SSC-HHHHHHHHTTCEEEC
T ss_pred cCCCCCCCCCCCCC-cHHHcCCCCEEEEeccCC-CCC-HHHHHHHHCCCeEeC
Confidence 8652100 0 010 123467889999986543 334 344555667765443
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00027 Score=70.71 Aligned_cols=129 Identities=12% Similarity=0.144 Sum_probs=74.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-------CCcEE-EEeCChhH------HHHHHHhhcccCCCCeeeeCCHHHHHhccCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK-------GFPIS-VYNRTTSK------VDETLDRAHREGQLPLTGHYTPRDFVLSIQR 72 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~-------G~~V~-v~dr~~~~------~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~ 72 (503)
.+|+|||+|.||+.++..|.++ +.+|. ++|+++.. .+++.+.....+.+.-... +..+++.+ .+
T Consensus 5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l~~-~~ 82 (325)
T 3ing_A 5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SGPEDLMG-EA 82 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGGTT-SC
T ss_pred EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CHHHHhcC-CC
Confidence 5899999999999999999874 34443 66887642 1112111000000000011 56666654 34
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCCh-hhHHHHHHHHHhcCccE-ecccCCCCh
Q 010702 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY-LNTERRIHEASQKGLLY-LGMGVSGGE 137 (503)
Q Consensus 73 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~-~~t~~~~~~l~~~gi~~-i~~pvsgg~ 137 (503)
.|+|+.|+|+....+...+.....|..|.-||....... ....++.+..+++|+.| +++.+.+|.
T Consensus 83 iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~gi 149 (325)
T 3ing_A 83 ADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGGV 149 (325)
T ss_dssp CSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTS
T ss_pred CCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeecccC
Confidence 899999999753333334444555678888887665322 23344555556667754 456665554
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00027 Score=68.63 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=51.9
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 4 ~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
.|||+|.|.|+|.+|+.++..|+++|++|.+.+|++++.+.+...+.. . ...++.++ + +..+|+||.+...
T Consensus 3 ~m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~-~~~D~~d~-~-~~~~d~vi~~a~~ 73 (286)
T 3ius_A 3 AMTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAE-----P-LLWPGEEP-S-LDGVTHLLISTAP 73 (286)
T ss_dssp --CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEE-----E-EESSSSCC-C-CTTCCEEEECCCC
T ss_pred CCcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCe-----E-EEeccccc-c-cCCCCEEEECCCc
Confidence 467899999999999999999999999999999999888776654321 1 11233321 1 4558999988753
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0011 Score=65.19 Aligned_cols=99 Identities=12% Similarity=0.100 Sum_probs=63.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHH----HHHhhccc-CCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDE----TLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|||+|||+|.+|.++|..|+.++. ++.+||+++++++- +....... ...++....+.+++ +.+|+||++
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~----~~aDvVvit 76 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLL----KGSEIIVVT 76 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGG----TTCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHh----CCCCEEEEe
Confidence 689999999999999999998875 79999999866442 22211000 00124445566543 339999998
Q ss_pred cCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 VKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.-. +. .++++..++.++. ++.+|+-.||-.
T Consensus 77 AG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~-p~aivlvvsNPv 121 (294)
T 2x0j_A 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPM 121 (294)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSH
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcC-CceEEEEecCcc
Confidence 632 11 2344455666654 567788888753
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0004 Score=72.70 Aligned_cols=90 Identities=13% Similarity=0.042 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++++|+|+|.+|..+|+.|+..|.+|.++|+++.+..+....+ + ...+.+++... +|+|+.+......+
T Consensus 266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g-------~-dv~~lee~~~~---aDvVi~atG~~~vl 334 (488)
T 3ond_A 266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEG-------L-QVLTLEDVVSE---ADIFVTTTGNKDII 334 (488)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------C-EECCGGGTTTT---CSEEEECSSCSCSB
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhC-------C-ccCCHHHHHHh---cCEEEeCCCChhhh
Confidence 4799999999999999999999999999999998877666543 2 23466776665 99999876543222
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCC
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
. ......++++.+|++.+...
T Consensus 335 ~---~e~l~~mk~gaiVvNaG~~~ 355 (488)
T 3ond_A 335 M---LDHMKKMKNNAIVCNIGHFD 355 (488)
T ss_dssp C---HHHHTTSCTTEEEEESSSTT
T ss_pred h---HHHHHhcCCCeEEEEcCCCC
Confidence 1 33566788999999998753
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0011 Score=66.34 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=71.4
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhCCCcEEEEeCCh--hHHHHHHHhhcccCCCCeeeeCCHHHHH-hccCCCcEEEEe--
Q 010702 6 LSRIGLAGLAVMGQN-LALNVAEKGFPISVYNRTT--SKVDETLDRAHREGQLPLTGHYTPRDFV-LSIQRPRSVIIL-- 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~-lA~~L~~~G~~V~v~dr~~--~~~~~l~~~~~~~g~~~i~~~~s~~e~~-~~l~~~dvIil~-- 79 (503)
+++|.|||+|.+|.+ +|+.|.+.|++|+++|+++ ...+.+.+.+. .+..-.+++++. .. +|+||.+
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi-----~v~~g~~~~~l~~~~---~d~vV~Spg 75 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGI-----DVYEGFDAAQLDEFK---ADVYVIGNV 75 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTC-----EEEESCCGGGGGSCC---CSEEEECTT
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCC-----EEECCCCHHHcCCCC---CCEEEECCC
Confidence 468999999999995 9999999999999999864 34556665543 133334555543 23 8999986
Q ss_pred cCCCh-hHHHHHH---------HHH-hcCCC--CCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 80 VKAGS-PVDQTIA---------ALS-EHMSP--GDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 80 vp~~~-~v~~vl~---------~l~-~~l~~--g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
+|.+. .+....+ +++ ..+.+ .-|-|..|+++..++.-+...++..|.
T Consensus 76 i~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~ 135 (326)
T 3eag_A 76 AKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGL 135 (326)
T ss_dssp CCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 44432 2333221 222 22222 235566677766666666677777664
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00039 Score=69.88 Aligned_cols=94 Identities=11% Similarity=0.087 Sum_probs=62.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcE-EEEeCChhHHHHHHHhhc-c-cCCC----------CeeeeCCHHHHHhccC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-FPI-SVYNRTTSKVDETLDRAH-R-EGQL----------PLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~~V-~v~dr~~~~~~~l~~~~~-~-~g~~----------~i~~~~s~~e~~~~l~ 71 (503)
|.||||+|+|.||+.+++.|.++. .+| .++|++++....+.+... . .+.+ .+....+++++..+
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~-- 79 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEK-- 79 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTT--
T ss_pred CcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccC--
Confidence 469999999999999999998764 454 467888877776664321 0 0000 12345678888765
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEec
Q 010702 72 RPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDG 106 (503)
Q Consensus 72 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~ 106 (503)
.|+|++|+|.+...+.. .. ++..|..||..
T Consensus 80 -vDvV~~aTp~~~h~~~a-~~---~l~aGk~Vi~s 109 (334)
T 2czc_A 80 -VDIIVDATPGGIGAKNK-PL---YEKAGVKAIFQ 109 (334)
T ss_dssp -CSEEEECCSTTHHHHHH-HH---HHHHTCEEEEC
T ss_pred -CCEEEECCCccccHHHH-HH---HHHcCCceEee
Confidence 99999999987544433 22 23456667743
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00085 Score=67.74 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=71.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|+|+|.|.+|..+|+.|...|.+|.++|+++++ .+..+.. +.+.. +.+++... ++|+++-|-... .+
T Consensus 176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~-~~~a~~~------ga~~v-~~~ell~~--~~DIliP~A~~~-~I 244 (355)
T 1c1d_A 176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER-VAHAVAL------GHTAV-ALEDVLST--PCDVFAPCAMGG-VI 244 (355)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHHHT------TCEEC-CGGGGGGC--CCSEEEECSCSC-CB
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHhc------CCEEe-ChHHhhcC--ccceecHhHHHh-hc
Confidence 58999999999999999999999999999999876 3333321 12322 55666551 389988653322 11
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
. .+-++.+ +.++|++.+|....+. +..+.+.++|+.++
T Consensus 245 ~---~~~~~~l-k~~iVie~AN~p~t~~-eA~~~L~~~gIlv~ 282 (355)
T 1c1d_A 245 T---TEVARTL-DCSVVAGAANNVIADE-AASDILHARGILYA 282 (355)
T ss_dssp C---HHHHHHC-CCSEECCSCTTCBCSH-HHHHHHHHTTCEEC
T ss_pred C---HHHHhhC-CCCEEEECCCCCCCCH-HHHHHHHhCCEEEE
Confidence 1 1222334 3689999998864332 33577888887665
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00041 Score=67.61 Aligned_cols=96 Identities=15% Similarity=0.083 Sum_probs=64.1
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhC-CCcEE-EEeCChhHH-----HHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEE
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEK-GFPIS-VYNRTTSKV-----DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~-----~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIi 77 (503)
|+||+|+| .|.||+.+++.+.+. ++++. ++|+++... .++.. ... ++..+++++++++. +|+||
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g--~~~---gv~v~~dl~~ll~~---~DVVI 78 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLG--KQT---GVALTDDIERVCAE---ADYLI 78 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTT--CCC---SCBCBCCHHHHHHH---CSEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhC--CCC---CceecCCHHHHhcC---CCEEE
Confidence 46999999 899999999998865 56665 478875321 11110 011 35667899998887 99999
Q ss_pred EecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhh
Q 010702 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN 113 (503)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~ 113 (503)
.+.++. .+.+.+... +..|.-+|.++|+....
T Consensus 79 DfT~p~-a~~~~~~~a---l~~G~~vVigTTG~s~~ 110 (272)
T 4f3y_A 79 DFTLPE-GTLVHLDAA---LRHDVKLVIGTTGFSEP 110 (272)
T ss_dssp ECSCHH-HHHHHHHHH---HHHTCEEEECCCCCCHH
T ss_pred EcCCHH-HHHHHHHHH---HHcCCCEEEECCCCCHH
Confidence 988763 444444444 34566677777776443
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00087 Score=66.17 Aligned_cols=113 Identities=17% Similarity=0.103 Sum_probs=76.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.+|.|+|+ |.||..++++|.+.|++ .++..+|.+.. +. .. ++..+.|++++.+...++|++++++|+. .
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g---~~--i~---G~~vy~sl~el~~~~~~~DvaIi~vp~~-~ 83 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGG---SE--VH---GVPVYDSVKEALAEHPEINTSIVFVPAP-F 83 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CE--ET---TEEEESSHHHHHHHCTTCCEEEECCCGG-G
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCC---ce--EC---CEeeeCCHHHHhhcCCCCCEEEEecCHH-H
Confidence 46888898 99999999999999998 56666665320 00 01 4678899999876321289999999995 6
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChh-hHHHHHHHHHhcCccEecc
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYL-NTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~-~t~~~~~~l~~~gi~~i~~ 131 (503)
+.+++++....= . ..+|-.++..+. +.+++.+.+++.|+.+++.
T Consensus 84 ~~~~v~ea~~~G-i-~~vVi~t~G~~~~~~~~l~~~A~~~gi~viGP 128 (297)
T 2yv2_A 84 APDAVYEAVDAG-I-RLVVVITEGIPVHDTMRFVNYARQKGATIIGP 128 (297)
T ss_dssp HHHHHHHHHHTT-C-SEEEECCCCCCHHHHHHHHHHHHHHTCEEECS
T ss_pred HHHHHHHHHHCC-C-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEcC
Confidence 777777766531 2 223334555443 3456677777788887754
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00048 Score=68.51 Aligned_cols=96 Identities=17% Similarity=0.111 Sum_probs=62.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHh--CCCc-EEEEeCChhH-HHHHHHhhcccCCCCee-eeCCHHHHHhc--cCCCcEEEE
Q 010702 6 LSRIGLAGLAVMGQNLALNVAE--KGFP-ISVYNRTTSK-VDETLDRAHREGQLPLT-GHYTPRDFVLS--IQRPRSVII 78 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~--~G~~-V~v~dr~~~~-~~~l~~~~~~~g~~~i~-~~~s~~e~~~~--l~~~dvIil 78 (503)
+.||||||+|.||..++..|.+ .+.+ +.++|+++++ ..++.+.. ++. ...+.+++++. .+..|+|++
T Consensus 4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~------g~~~~~~~~e~ll~~~~~~~iDvV~~ 77 (312)
T 1nvm_B 4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM------GVTTTYAGVEGLIKLPEFADIDFVFD 77 (312)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT------TCCEESSHHHHHHHSGGGGGEEEEEE
T ss_pred CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHc------CCCcccCCHHHHHhccCCCCCcEEEE
Confidence 3589999999999999999965 3455 4578999887 55555432 122 34566777543 234799999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++|.... .+.....+.. .+|..|++.+..
T Consensus 78 atp~~~h-~~~a~~al~a-~~Gk~Vi~ekp~ 106 (312)
T 1nvm_B 78 ATSASAH-VQNEALLRQA-KPGIRLIDLTPA 106 (312)
T ss_dssp CSCHHHH-HHHHHHHHHH-CTTCEEEECSTT
T ss_pred CCChHHH-HHHHHHHHHh-CCCCEEEEcCcc
Confidence 9996433 3333333321 238889987654
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0003 Score=73.91 Aligned_cols=81 Identities=16% Similarity=0.264 Sum_probs=57.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~~ 83 (503)
.|||-|+|+|.+|..+|+.|.+.||+|++.|+++++++++.+..... .+.+..+-.++.+ .++++|.++.+++++
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~---~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D 79 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLR---VVNGHASHPDVLHEAGAQDADMLVAVTNTD 79 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCE---EEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcE---EEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence 47999999999999999999999999999999999998887642111 1233333333332 356799887766654
Q ss_pred hhHHHHH
Q 010702 84 SPVDQTI 90 (503)
Q Consensus 84 ~~v~~vl 90 (503)
.+.-++
T Consensus 80 -e~Nl~~ 85 (461)
T 4g65_A 80 -ETNMAA 85 (461)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 444333
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00061 Score=67.54 Aligned_cols=110 Identities=14% Similarity=0.028 Sum_probs=78.0
Q ss_pred CcEEEE-cc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCC
Q 010702 7 SRIGLA-GL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgII-Gl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~ 82 (503)
.+|+|| |+ |.+|..++++|.+.|++ .+|+.+|.+.. +. .. ++..+.|++|+.+ . +|++++++|+
T Consensus 14 ~siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g---~~--i~---G~~vy~sl~el~~~~~---vD~avI~vP~ 81 (305)
T 2fp4_A 14 NTKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGG---KT--HL---GLPVFNTVKEAKEQTG---ATASVIYVPP 81 (305)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CE--ET---TEEEESSHHHHHHHHC---CCEEEECCCH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCc---ce--EC---CeeeechHHHhhhcCC---CCEEEEecCH
Confidence 468999 98 99999999999999999 56666765311 00 11 4678889999987 5 9999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCCh-hhHHHHHHHHHhc-CccEecc
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWY-LNTERRIHEASQK-GLLYLGM 131 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~-~~t~~~~~~l~~~-gi~~i~~ 131 (503)
. .+.++++++...- - ..++..+.+.+ .+..++.+.+++. |+.+++.
T Consensus 82 ~-~~~~~~~e~i~~G-i-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGP 129 (305)
T 2fp4_A 82 P-FAAAAINEAIDAE-V-PLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGP 129 (305)
T ss_dssp H-HHHHHHHHHHHTT-C-SEEEECCCCCCHHHHHHHHHHHTTCSSCEEECS
T ss_pred H-HHHHHHHHHHHCC-C-CEEEEECCCCChHHHHHHHHHHHhcCCcEEEeC
Confidence 4 6777777766532 2 23334444443 3444677777888 8888754
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=68.42 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=52.5
Q ss_pred CcEEEEcccHHHHHHHHH--HHhCCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQNLALN--VAEKGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~--L~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
.+|+|||+|.+|..++.. +...|+++. ++|.++++....... +.+...++++++++. .|+|++|+|+.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~g------v~V~~~~dl~eli~~---~D~ViIAvPs~ 156 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGG------VPVYNLDDLEQHVKD---ESVAILTVPAV 156 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETT------EEEEEGGGHHHHCSS---CCEEEECSCHH
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcC------CeeechhhHHHHHHh---CCEEEEecCch
Confidence 589999999999999994 445688765 679999865432211 124455677777765 49999999984
Q ss_pred hhHHHHHHHHHh
Q 010702 84 SPVDQTIAALSE 95 (503)
Q Consensus 84 ~~v~~vl~~l~~ 95 (503)
...++++.+..
T Consensus 157 -~~~ei~~~l~~ 167 (215)
T 2vt3_A 157 -AAQSITDRLVA 167 (215)
T ss_dssp -HHHHHHHHHHH
T ss_pred -hHHHHHHHHHH
Confidence 44566666654
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00054 Score=63.89 Aligned_cols=73 Identities=15% Similarity=0.239 Sum_probs=50.6
Q ss_pred CCCc-EEEEc-ccHHHHHHHHHHH-hCCCcEEEEeCChh-HHHHHHHhhcccCCCCeee----eCCHHHHHhccCCCcEE
Q 010702 5 ALSR-IGLAG-LAVMGQNLALNVA-EKGFPISVYNRTTS-KVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSV 76 (503)
Q Consensus 5 ~~~~-IgIIG-lG~mG~~lA~~L~-~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~----~~s~~e~~~~l~~~dvI 76 (503)
+||| |.|+| .|.+|..+++.|+ +.|++|.+.+|+++ +.+++..... ++.. ..+.+++.+.++.+|+|
T Consensus 3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~d~~~~~~~~~~~d~v 77 (221)
T 3r6d_A 3 AMYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHE-----RVTVIEGSFQNPGXLEQAVTNAEVV 77 (221)
T ss_dssp CSCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTST-----TEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred ceEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCC-----ceEEEECCCCCHHHHHHHHcCCCEE
Confidence 3455 99999 5999999999999 89999999999998 7666542211 1111 12334443334458888
Q ss_pred EEecCC
Q 010702 77 IILVKA 82 (503)
Q Consensus 77 il~vp~ 82 (503)
|.+...
T Consensus 78 v~~ag~ 83 (221)
T 3r6d_A 78 FVGAME 83 (221)
T ss_dssp EESCCC
T ss_pred EEcCCC
Confidence 888764
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0019 Score=64.72 Aligned_cols=99 Identities=13% Similarity=0.102 Sum_probs=65.0
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCC----hhHHHH----HHHhh-cccCCCCeeeeCCHHHHHh
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRT----TSKVDE----TLDRA-HREGQLPLTGHYTPRDFVL 68 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~----~~~~~~----l~~~~-~~~g~~~i~~~~s~~e~~~ 68 (503)
.|||+|+|+ |.+|.+++..|+..|+ +|.++|++ .++.+. +.... ...+ ++....+..++++
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~--~i~~~~~~~~al~ 82 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLA--GMTAHADPMTAFK 82 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEE--EEEEESSHHHHTT
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccC--cEEEecCcHHHhC
Confidence 369999997 9999999999999886 79999999 554432 22210 0000 3455567777666
Q ss_pred ccCCCcEEEEecCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 69 SIQRPRSVIILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+ +|+||++...+. .++++++.+..+..+..+||..||-
T Consensus 83 ~---aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNP 135 (329)
T 1b8p_A 83 D---ADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNP 135 (329)
T ss_dssp T---CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred C---CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCc
Confidence 6 999999864221 1334445555543356688888763
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00029 Score=67.64 Aligned_cols=108 Identities=14% Similarity=0.115 Sum_probs=71.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.|+|+++|+|.||+.+++. . ++++ .+|+ ++..++ ++..+++++++++. +|+|+.|.+. .
T Consensus 12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~gel----------gv~a~~d~d~lla~---pD~VVe~A~~-~ 71 (253)
T 1j5p_A 12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISKDI----------PGVVRLDEFQVPSD---VSTVVECASP-E 71 (253)
T ss_dssp CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCCCC----------SSSEECSSCCCCTT---CCEEEECSCH-H
T ss_pred cceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cccccc----------CceeeCCHHHHhhC---CCEEEECCCH-H
Confidence 3799999999999999998 4 8886 5677 332221 24567788888754 9999999755 3
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhh---HHHHHHHHHhcCccE-ecccCCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLN---TERRIHEASQKGLLY-LGMGVSGG 136 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~---t~~~~~~l~~~gi~~-i~~pvsgg 136 (503)
++++. +.+.|..|.-++-.|.+...+ .+++.+.+++.|..+ +..+..+|
T Consensus 72 av~e~---~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSGAi~G 124 (253)
T 1j5p_A 72 AVKEY---SLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGG 124 (253)
T ss_dssp HHHHH---HHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTTCCC
T ss_pred HHHHH---HHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCCcccc
Confidence 44443 445577888888887763222 234444445555554 54566665
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00061 Score=66.75 Aligned_cols=97 Identities=12% Similarity=0.094 Sum_probs=63.6
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhC-CCcEE-EEeCChhH-----HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEE
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEK-GFPIS-VYNRTTSK-----VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~-G~~V~-v~dr~~~~-----~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIi 77 (503)
++||+|+| +|.||+.++..+.+. ++++. ++|+++.. +.++...+ ..++..++++++++.. +|+||
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~----~~gv~v~~dl~~ll~~---aDVvI 93 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD----FLGVRITDDPESAFSN---TEGIL 93 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCS----CCSCBCBSCHHHHTTS---CSEEE
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccC----cCCceeeCCHHHHhcC---CCEEE
Confidence 45899999 999999999998754 67754 66887532 11111100 1246778899998876 99999
Q ss_pred EecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhh
Q 010702 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLN 113 (503)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~ 113 (503)
-+.++. .+.+.+.. .+..|.-+|.++|+....
T Consensus 94 DFT~p~-a~~~~~~~---~l~~Gv~vViGTTG~~~e 125 (288)
T 3ijp_A 94 DFSQPQ-ASVLYANY---AAQKSLIHIIGTTGFSKT 125 (288)
T ss_dssp ECSCHH-HHHHHHHH---HHHHTCEEEECCCCCCHH
T ss_pred EcCCHH-HHHHHHHH---HHHcCCCEEEECCCCCHH
Confidence 877653 33433333 344677777777776543
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00036 Score=70.06 Aligned_cols=125 Identities=17% Similarity=0.185 Sum_probs=72.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhC------C--CcE-EEEeCChhHHHH------HHHhhcccCCCCe-eeeC---CHHHHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK------G--FPI-SVYNRTTSKVDE------TLDRAHREGQLPL-TGHY---TPRDFV 67 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~------G--~~V-~v~dr~~~~~~~------l~~~~~~~g~~~i-~~~~---s~~e~~ 67 (503)
.||||||+|.||+.++..|.+. | ++| .++||++++.++ +.+..... .+ ..++ ++++++
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~ll 83 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKG---SLDSLEYESISASEAL 83 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTT---CGGGCCSEECCHHHHH
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccC---CcccccCCCCCHHHHh
Confidence 5899999999999999998764 2 454 477998765332 11111000 11 1234 899988
Q ss_pred hccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCC-hhhHHHHHHHHHhcCccE-ecccCCCC
Q 010702 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW-YLNTERRIHEASQKGLLY-LGMGVSGG 136 (503)
Q Consensus 68 ~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~-~~~t~~~~~~l~~~gi~~-i~~pvsgg 136 (503)
+ .+.|+|+.|+|.....+...+-....|..|+-|+...... .....++.+..+++|+.| +++.+.+|
T Consensus 84 -~-~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~~ea~vg~g 152 (331)
T 3c8m_A 84 -A-RDFDIVVDATPASADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIRYEATVAGG 152 (331)
T ss_dssp -H-SSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTT
T ss_pred -C-CCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 4 3589999999984001112222334456788888653211 123344555556667654 44445444
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0031 Score=62.37 Aligned_cols=99 Identities=10% Similarity=0.106 Sum_probs=59.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCC--cEEEEeC--ChhHHHHHHHhhccc--CCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGF--PISVYNR--TTSKVDETLDRAHRE--GQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~--~V~v~dr--~~~~~~~l~~~~~~~--g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|||+|+| +|.+|.+++..|+..|+ ++.++|+ ++++++......... -..++....+..+.++ .+|+||++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~---~aDvVi~~ 77 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTA---GSDVVVIT 77 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGT---TCSEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhC---CCCEEEEc
Confidence 5899999 99999999999998886 6889999 876543322110000 0001222222233344 49999998
Q ss_pred cCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
...+. .++++++.+... .+..+|+..||.
T Consensus 78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SNP 121 (303)
T 1o6z_A 78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNP 121 (303)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCCh
Confidence 75321 233444555554 456677776654
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0014 Score=65.03 Aligned_cols=117 Identities=16% Similarity=0.153 Sum_probs=75.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC---hhHHHHHHHhhcccCCCCeee--eCCH---HHHHhccCCCcEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT---TSKVDETLDRAHREGQLPLTG--HYTP---RDFVLSIQRPRSVI 77 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~---~~~~~~l~~~~~~~g~~~i~~--~~s~---~e~~~~l~~~dvIi 77 (503)
+++.|+|+|-+|++++..|++.|. +|++++|+ .++.+++.+.........+.. ..+. .+.+.. +|+||
T Consensus 149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~---~DiII 225 (312)
T 3t4e_A 149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALAS---ADILT 225 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHH---CSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccC---ceEEE
Confidence 579999999999999999999998 79999999 888887765422110001122 2333 344455 99999
Q ss_pred EecCCChh-HHHHHHHH---HhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 78 ILVKAGSP-VDQTIAAL---SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 78 l~vp~~~~-v~~vl~~l---~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
-++|.+-. ... ..+ ...+.++.+|+|.--.. ..| .+.+..+++|...++
T Consensus 226 NaTp~Gm~~~~~--~~~~~~~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~~ 278 (312)
T 3t4e_A 226 NGTKVGMKPLEN--ESLIGDVSLLRPELLVTECVYNP-HMT-KLLQQAQQAGCKTID 278 (312)
T ss_dssp ECSSTTSTTSTT--CCSCCCGGGSCTTCEEEECCCSS-SSC-HHHHHHHHTTCEEEC
T ss_pred ECCcCCCCCCCC--CcccCCHHHcCCCCEEEEeccCC-CCC-HHHHHHHHCCCeEEC
Confidence 99998631 010 011 13467889999986543 334 344555667765544
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00013 Score=72.53 Aligned_cols=93 Identities=13% Similarity=0.052 Sum_probs=61.7
Q ss_pred CcEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee---e--CCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVM-GQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG---H--YTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~---~--~s~~e~~~~l~~~dvIil~v 80 (503)
.++.|||.|.| |..+|+.|+..|.+|+++||+..+..+......... ...+. + .++++.+.. +|+||.++
T Consensus 178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~-~~~t~~~~t~~~~L~e~l~~---ADIVIsAt 253 (320)
T 1edz_A 178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNK-HHVEDLGEYSEDLLKKCSLD---SDVVITGV 253 (320)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCC-CEEEEEEECCHHHHHHHHHH---CSEEEECC
T ss_pred CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhc-ccccccccccHhHHHHHhcc---CCEEEECC
Confidence 57999999975 999999999999999999998443211111100000 00111 1 456666766 99999999
Q ss_pred CCChh-HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 81 KAGSP-VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 81 p~~~~-v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.... +. ...+++|.+|||.+..
T Consensus 254 g~p~~vI~------~e~vk~GavVIDVgi~ 277 (320)
T 1edz_A 254 PSENYKFP------TEYIKEGAVCINFACT 277 (320)
T ss_dssp CCTTCCBC------TTTSCTTEEEEECSSS
T ss_pred CCCcceeC------HHHcCCCeEEEEcCCC
Confidence 87532 11 1236789999999875
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.001 Score=64.34 Aligned_cols=74 Identities=20% Similarity=0.399 Sum_probs=59.0
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|||.| .+|.++|..|...|.+|++++++. .++++.+.. +|+||.+++.+..
T Consensus 151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 206 (276)
T 3ngx_A 151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT---------------------KDIGSMTRS---SKIVVVAVGRPGF 206 (276)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SCHHHHHHH---SSEEEECSSCTTC
T ss_pred CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc---------------------ccHHHhhcc---CCEEEECCCCCcc
Confidence 579999997 589999999999999999998642 356677777 9999999987543
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ..++++|.+|||.+...
T Consensus 207 I~------~~~vk~GavVIDvgi~~ 225 (276)
T 3ngx_A 207 LN------REMVTPGSVVIDVGINY 225 (276)
T ss_dssp BC------GGGCCTTCEEEECCCEE
T ss_pred cc------HhhccCCcEEEEeccCc
Confidence 22 14578999999998753
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0006 Score=66.51 Aligned_cols=101 Identities=15% Similarity=0.162 Sum_probs=60.1
Q ss_pred CCcCCCCcEEEEcc-cHHHHHHHHHHHh-CCCcEE-EEeCChhHH--HHHHHh-hcccCCCCeeeeCCHHHHHhccCCCc
Q 010702 1 MEASALSRIGLAGL-AVMGQNLALNVAE-KGFPIS-VYNRTTSKV--DETLDR-AHREGQLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 1 M~~~~~~~IgIIGl-G~mG~~lA~~L~~-~G~~V~-v~dr~~~~~--~~l~~~-~~~~g~~~i~~~~s~~e~~~~l~~~d 74 (503)
|.+. +|||+|+|+ |.||+.++..+.+ .|++|. ++|++++.. ..+.+. +... .++...++++++++. +|
T Consensus 1 ~~~~-~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~--~~v~~~~dl~~~l~~---~D 74 (273)
T 1dih_A 1 MHDA-NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGK--TGVTVQSSLDAVKDD---FD 74 (273)
T ss_dssp -CCC-BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSC--CSCCEESCSTTTTTS---CS
T ss_pred CCCC-CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCc--CCceecCCHHHHhcC---CC
Confidence 5543 369999998 9999999998774 577766 788876431 000000 0000 134456677776655 99
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
+||-+.++ ....+.+... +..|.-+|-.++...
T Consensus 75 vVIDft~p-~~~~~~~~~a---~~~G~~vVigTtG~~ 107 (273)
T 1dih_A 75 VFIDFTRP-EGTLNHLAFC---RQHGKGMVIGTTGFD 107 (273)
T ss_dssp EEEECSCH-HHHHHHHHHH---HHTTCEEEECCCCCC
T ss_pred EEEEcCCh-HHHHHHHHHH---HhCCCCEEEECCCCC
Confidence 99955543 2344444433 345666666666543
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0061 Score=60.45 Aligned_cols=97 Identities=16% Similarity=0.198 Sum_probs=60.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhC-C--CcEEEEeCChh---HHHHHHHhhcccCCCCeeee--CCHHHHHhccCCCcEEE
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEK-G--FPISVYNRTTS---KVDETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~-G--~~V~v~dr~~~---~~~~l~~~~~~~g~~~i~~~--~s~~e~~~~l~~~dvIi 77 (503)
|||+||| +|.+|.+++..|+.. + .++.++|+++. ...++... ... ..+... ++..+..++ +|+||
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~-~~~--~~v~~~~~~~~~~~~~~---aDivi 74 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHI-PTA--VKIKGFSGEDATPALEG---ADVVL 74 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTS-CSS--EEEEEECSSCCHHHHTT---CSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCC-CCC--ceEEEecCCCcHHHhCC---CCEEE
Confidence 5899999 899999999999875 5 47999999872 12222221 100 023322 234444555 99999
Q ss_pred EecCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 78 ILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 78 l~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++...+. .++++.+.+..+ .++.+|+..||-.
T Consensus 75 i~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPv 121 (312)
T 3hhp_A 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNPV 121 (312)
T ss_dssp ECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCH
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEecCcc
Confidence 9874321 133334555555 4667888887743
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.031 Score=53.69 Aligned_cols=148 Identities=14% Similarity=0.088 Sum_probs=102.7
Q ss_pred CeeeeCCHHHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc---c
Q 010702 56 PLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM---G 132 (503)
Q Consensus 56 ~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~---p 132 (503)
++...++-.|+++. +|++|+-+|-+...-.+++.+++++++|.||.++.|.++.......+.+..+.+..... .
T Consensus 128 GVkVtsDD~EAvk~---AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCTipp~~ly~~le~l~R~DvgIsS~HPaa 204 (358)
T 2b0j_A 128 GLKVTSDDREAVEG---ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGC 204 (358)
T ss_dssp TCEEESCHHHHHTT---CSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCSS
T ss_pred CcEeecchHHHhcC---CCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccCCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 57788888899888 99999999999878889999999999999999999998877666666555443433332 2
Q ss_pred CCCChhhhhcCCcccCC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010702 133 VSGGEEGARHGPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLK 210 (503)
Q Consensus 133 vsgg~~~a~~G~~i~~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~ 210 (503)
|-|. .|.++..- .+++..+++.++.+..+ +..|.+...=.+...-|. -.+.+...+.+.+-+....
T Consensus 205 VPgt-----~Gq~~~g~~yAtEEqIeklveLaksa~------k~ay~vPAdl~SpV~DMg-s~vTAv~~AGiL~Y~~~vt 272 (358)
T 2b0j_A 205 VPEM-----KGQVYIAEGYASEEAVNKLYEIGKIAR------GKAFKMPANLIGPVCDMC-SAVTATVYAGLLAYRDAVT 272 (358)
T ss_dssp CTTT-----CCCEEEEESSSCHHHHHHHHHHHHHHH------SCEEEEEHHHHHHHHSTT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-----CCccccccccCCHHHHHHHHHHHHHhC------CCeEecchhhccchhhhH-HHHHHHHHHHHHHHHHHHH
Confidence 2222 34422221 38899999999999999 677766443333333333 2344456667777777776
Q ss_pred HhCCCCHH
Q 010702 211 HVGGLSNA 218 (503)
Q Consensus 211 ~~g~~~~~ 218 (503)
+..|.+.+
T Consensus 273 kIlgAP~~ 280 (358)
T 2b0j_A 273 KILGAPAD 280 (358)
T ss_dssp TTSCCCHH
T ss_pred HHhcCcHH
Confidence 65545543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0026 Score=58.72 Aligned_cols=69 Identities=14% Similarity=0.248 Sum_probs=48.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHH-HhccCCCcEEEEecCC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF-VLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~-~~~l~~~dvIil~vp~ 82 (503)
|||.|+| .|.+|+.++..|++.|++|.+.+|++++.+.+. .+. .+. ..++.+. .+.+..+|+||.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~-----~~~-~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDI-----NIL-QKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSS-----EEE-ECCGGGCCHHHHTTCSEEEECCCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCC-----eEE-eccccChhhhhhcCCCEEEECCcC
Confidence 5899999 599999999999999999999999998876653 111 111 1121100 0233449999998754
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0034 Score=60.21 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=31.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 39 (503)
++|.|||+|.+|+.+|.+|++.|. +++++|++.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 579999999999999999999997 899999987
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.012 Score=57.88 Aligned_cols=106 Identities=12% Similarity=0.069 Sum_probs=78.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchh
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~ 404 (503)
.+.++.+|.+.|.+.+..+..++|++.+.++. ++|.+++.++++.| ..+|++++.....+-+.+.. +
T Consensus 172 ~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~------~ 238 (303)
T 3g0o_A 172 PGAGSTVKIIHQLLAGVHIAAAAEAMALAARA------GIPLDVMYDVVTHA-AGNSWMFENRMQHVVDGDYT------P 238 (303)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTS-TTCCHHHHHHHHHHHTTCCC------C
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-ccCCHHHHhhhHHHhcCCCC------C
Confidence 36788999999999999999999999988753 39999999999987 45788777654443332211 1
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010702 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (503)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (503)
.|. +.....+++.++..|-+.|+|+|.+.++...|....
T Consensus 239 ~~~--~~~~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 277 (303)
T 3g0o_A 239 RSA--VDIFVKDLGLVADTAKALRFPLPLASTALNMFTSAS 277 (303)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CCc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 111 112334567899999999999999999988665443
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00089 Score=63.26 Aligned_cols=74 Identities=11% Similarity=0.199 Sum_probs=49.8
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|++|.|.| .|.+|+.+++.|++.| ++|.+++|++++.+.+...... -+.. ..+.+++.+.++.+|+||.+...
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~----~~~~Dl~d~~~~~~~~~~~D~vv~~a~~ 98 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQ----IIMGDVLNHAALKQAMQGQDIVYANLTG 98 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEE----EEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcE----EEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence 45688998 6999999999999999 8999999998765433221110 0111 12444444444558999887765
Q ss_pred C
Q 010702 83 G 83 (503)
Q Consensus 83 ~ 83 (503)
.
T Consensus 99 ~ 99 (236)
T 3qvo_A 99 E 99 (236)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0012 Score=56.17 Aligned_cols=102 Identities=13% Similarity=0.017 Sum_probs=73.8
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
.+|+|||+ +..|..+.++|.+.||+|+-.|...+.+ . +...+.|+.++-+ .|++++++|.
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i---------~---G~~~y~sl~dlp~----vDlavi~~p~ 68 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV---------L---GKTIINERPVIEG----VDTVTLYINP 68 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE---------T---TEECBCSCCCCTT----CCEEEECSCH
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC---------C---CeeccCChHHCCC----CCEEEEEeCH
Confidence 57999997 6799999999999999988888654321 1 3456667666432 7999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+.+.++++++...-.+ .+|+..+.. .+++.+.+++.|+++++
T Consensus 69 -~~v~~~v~e~~~~g~k-~v~~~~G~~----~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 69 -QNQLSEYNYILSLKPK-RVIFNPGTE----NEELEEILSENGIEPVI 110 (122)
T ss_dssp -HHHGGGHHHHHHHCCS-EEEECTTCC----CHHHHHHHHHTTCEEEE
T ss_pred -HHHHHHHHHHHhcCCC-EEEECCCCC----hHHHHHHHHHcCCeEEC
Confidence 4788888887764333 466544432 34667777888999884
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0029 Score=63.63 Aligned_cols=97 Identities=11% Similarity=0.005 Sum_probs=59.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhh--cccCCC------------CeeeeCCHHHHHhc
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRA--HREGQL------------PLTGHYTPRDFVLS 69 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~--~~~g~~------------~i~~~~s~~e~~~~ 69 (503)
|+||||+|+|.+|+.+++.|.++ +++|. +.|++++....+.+.. ...|.+ .+....++.++...
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~ 81 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIED 81 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGG
T ss_pred ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccC
Confidence 46999999999999999999876 46754 5577766655554431 000000 11112233333334
Q ss_pred cCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 70 IQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 70 l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
+|+|+.|+|.+.. .+... ..++..|..||+.+.
T Consensus 82 ---vDiV~eatg~~~s-~~~a~--~~~l~aG~~VI~sap 114 (343)
T 2yyy_A 82 ---ADIVVDGAPKKIG-KQNLE--NIYKPHKVKAILQGG 114 (343)
T ss_dssp ---CSEEEECCCTTHH-HHHHH--HTTTTTTCEEEECTT
T ss_pred ---CCEEEECCCcccc-HHHHH--HHHHHCCCEEEECCC
Confidence 8999999988632 22222 356778888887443
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0059 Score=61.34 Aligned_cols=96 Identities=14% Similarity=0.102 Sum_probs=60.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcE-EEEeCChhHHHHHHHhhcccC-----------CCCeeeeCCHHHHHhccCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG-FPI-SVYNRTTSKVDETLDRAHREG-----------QLPLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G-~~V-~v~dr~~~~~~~l~~~~~~~g-----------~~~i~~~~s~~e~~~~l~~~ 73 (503)
.||||+|+|.||+.+++.|.++. ++| .+.|++++....+.......- ..++....+++++.++ +
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~---v 78 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKT---S 78 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHH---C
T ss_pred eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcC---C
Confidence 48999999999999999998764 454 467888776555544311000 0011122244454445 8
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
|+|+.|+|... ..+..... +..|..+|+.|..
T Consensus 79 DvV~~aTp~~~-s~~~a~~~---~~aG~kvV~~sa~ 110 (340)
T 1b7g_O 79 DIVVDTTPNGV-GAQYKPIY---LQLQRNAIFQGGE 110 (340)
T ss_dssp SEEEECCSTTH-HHHHHHHH---HHTTCEEEECTTS
T ss_pred CEEEECCCCch-hHHHHHHH---HHcCCeEEEeCCC
Confidence 99999999863 33343333 3467778888765
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0063 Score=63.53 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=68.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh----hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCC-CcEEEEe--
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT----SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQR-PRSVIIL-- 79 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~----~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~-~dvIil~-- 79 (503)
++|.|||+|..|.+.|+.|++.|++|+++|+++ ...+.+.+.+. .+..-..+++... . +|+||.+
T Consensus 10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi-----~~~~g~~~~~~~~---~~~d~vv~spg 81 (451)
T 3lk7_A 10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGI-----KVVCGSHPLELLD---EDFCYMIKNPG 81 (451)
T ss_dssp CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTC-----EEEESCCCGGGGG---SCEEEEEECTT
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCC-----EEEECCChHHhhc---CCCCEEEECCc
Confidence 589999999999999999999999999999854 23455555442 1222233333322 2 6888886
Q ss_pred cCCChh-HHHHHH---------HHHhcCCCCC-EEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 80 VKAGSP-VDQTIA---------ALSEHMSPGD-CIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 80 vp~~~~-v~~vl~---------~l~~~l~~g~-iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+|.+.+ +....+ +++..+.+.. |-|..|++...++.-+...++..|..
T Consensus 82 i~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~ 140 (451)
T 3lk7_A 82 IPYNNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQR 140 (451)
T ss_dssp SCTTSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTCC
T ss_pred CCCCChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence 444322 222211 2332222334 44555666655555566677777653
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.002 Score=64.73 Aligned_cols=96 Identities=15% Similarity=0.096 Sum_probs=60.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhc--ccCC----------CCeeeeCCHHHHHhccCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAH--REGQ----------LPLTGHYTPRDFVLSIQR 72 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~--~~g~----------~~i~~~~s~~e~~~~l~~ 72 (503)
+||||+|+|.||+.+++.|.++ +++|. +.|+++.....+..... ..+. .++....+++++...
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~--- 78 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDE--- 78 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHT---
T ss_pred eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcC---
Confidence 5899999999999999999875 45654 56887665554443210 0000 012222356666655
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 73 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+|+|+.|+|.+. ..+.....+ ..|..|||.+..
T Consensus 79 vDvV~~atp~~~-~~~~a~~~l---~aG~~VId~sp~ 111 (337)
T 1cf2_P 79 ADIVIDCTPEGI-GAKNLKMYK---EKGIKAIFQGGE 111 (337)
T ss_dssp CSEEEECCSTTH-HHHHHHHHH---HHTCCEEECTTS
T ss_pred CCEEEECCCchh-hHHHHHHHH---HcCCEEEEecCC
Confidence 999999999874 344444433 346678888776
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0036 Score=58.08 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=48.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHH--HHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRD--FVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e--~~~~l~~~dvIil~vp~ 82 (503)
|||.|.|. |.+|+.++..|++.|++|.+.+|++++.+.+...+.. +. ..++.+ . +.+..+|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~-----~~-~~D~~d~~~-~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVA-----TL-VKEPLVLTE-ADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSE-----EE-ECCGGGCCH-HHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCce-----EE-ecccccccH-hhcccCCEEEECCcc
Confidence 57999996 9999999999999999999999999887765432211 11 112211 1 223448999988744
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0018 Score=65.69 Aligned_cols=96 Identities=13% Similarity=0.060 Sum_probs=67.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC----hhH----H----HHHHHhhcccCCCCeeeeCCHHHHHhccCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRT----TSK----V----DETLDRAHREGQLPLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~----~~~----~----~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~ 73 (503)
.||.|+|+|.+|..+|+.|...|. +|+++||+ .++ + +.+..... ......+++|++.. +
T Consensus 193 ~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~-----~~~~~~~L~eav~~---A 264 (388)
T 1vl6_A 193 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITN-----PERLSGDLETALEG---A 264 (388)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSC-----TTCCCSCHHHHHTT---C
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhh-----ccCchhhHHHHHcc---C
Confidence 589999999999999999999998 79999998 544 2 23332210 11224578888887 9
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
|++|-+..++... +++...+.++.+|+++||-.|+.+
T Consensus 265 DVlIG~Sap~l~t----~emVk~Ma~~pIIfalSNPt~E~~ 301 (388)
T 1vl6_A 265 DFFIGVSRGNILK----PEWIKKMSRKPVIFALANPVPEID 301 (388)
T ss_dssp SEEEECSCSSCSC----HHHHTTSCSSCEEEECCSSSCSSC
T ss_pred CEEEEeCCCCccC----HHHHHhcCCCCEEEEcCCCCCCCC
Confidence 9988776533223 344444667889999999765433
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0018 Score=63.43 Aligned_cols=73 Identities=21% Similarity=0.309 Sum_probs=56.8
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHH--HHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR--DFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~--e~~~~l~~~dvIil~vp~~ 83 (503)
+++.|||.|. +|.++|..|...|.+|+++++... +++ +.+.+ +|+||.+++.+
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~---------------------~l~l~~~~~~---ADIVI~Avg~p 221 (300)
T 4a26_A 166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS---------------------TEDMIDYLRT---ADIVIAAMGQP 221 (300)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC---------------------HHHHHHHHHT---CSEEEECSCCT
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC---------------------Cchhhhhhcc---CCEEEECCCCC
Confidence 5799999876 899999999999999999997432 222 45555 99999999875
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..+. ...+++|.+|||.+..
T Consensus 222 ~~I~------~~~vk~GavVIDvgi~ 241 (300)
T 4a26_A 222 GYVK------GEWIKEGAAVVDVGTT 241 (300)
T ss_dssp TCBC------GGGSCTTCEEEECCCE
T ss_pred CCCc------HHhcCCCcEEEEEecc
Confidence 3322 1357899999999864
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.014 Score=56.79 Aligned_cols=106 Identities=16% Similarity=0.187 Sum_probs=80.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchh
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~ 404 (503)
.+.++.+|.++|.+.++.+..++|++.+.++. ++|..++.++++.| ...|++++.....+.+.+.. +
T Consensus 164 ~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~------~ 230 (287)
T 3pef_A 164 VGKGAEMKLVVNMVMGGMMACFCEGLALGEKA------GLATDAILDVIGAG-AMANPMFALKGGLIRDRNFA------P 230 (287)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHS-TTCCHHHHHHHHHHHTTCCC------C
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-ccccHHHHHHhhhhhcCCCC------C
Confidence 36788999999999999999999999998853 39999999999987 35788877765555443211 1
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010702 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (503)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (503)
.|. +.....+++.++..|-+.|+|+|.+.++...|....
T Consensus 231 ~~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 269 (287)
T 3pef_A 231 AFP--LKHMQKDLRLAVALGDRVGQPLVASAAANELFKGAR 269 (287)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CCc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 121 122334579999999999999999999988665443
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0034 Score=62.76 Aligned_cols=110 Identities=10% Similarity=0.081 Sum_probs=69.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeC-CHHHHHh-ccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHY-TPRDFVL-SIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~-s~~e~~~-~l~~~dvIil~vp~~~ 84 (503)
++|-|+|.|.+|..+++.|.+.|+ |.+.|+++++++ +.+.+.. -+.+.. +++.+.+ .++++|.++++++++.
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~----~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~ 189 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGAN----FVHGDPTRVSDLEKANVRGARAVIVDLESDS 189 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCE----EEESCTTSHHHHHHTCSTTEEEEEECCSSHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcE----EEEeCCCCHHHHHhcChhhccEEEEcCCccH
Confidence 469999999999999999999999 999999999988 6654321 122222 3333332 3667999999998753
Q ss_pred hHHHHHHHHHhcCCCC-CEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 85 PVDQTIAALSEHMSPG-DCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g-~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
.... +-.....+.+. .++.-..+. ... +.+...|+..+
T Consensus 190 ~n~~-~~~~ar~~~~~~~iiar~~~~--~~~----~~l~~~G~d~v 228 (336)
T 1lnq_A 190 ETIH-CILGIRKIDESVRIIAEAERY--ENI----EQLRMAGADQV 228 (336)
T ss_dssp HHHH-HHHHHHTTCTTSEEEEECSSG--GGH----HHHHHTTCSEE
T ss_pred HHHH-HHHHHHHHCCCCeEEEEECCH--HHH----HHHHHcCCCEE
Confidence 2222 23333445554 555555432 222 23345566544
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.02 Score=56.84 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=79.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchh
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~ 404 (503)
.+.++.+|.++|.+.++.+..++|++.+.++. ++|.+++.++++.+ ..+|++++.....+.+.+.. +
T Consensus 192 ~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~l~~~~~------~ 258 (320)
T 4dll_A 192 HGSGQLTKLANQMIVGITIGAVAEALLFATKG------GADMAKVKEAITGG-FADSRVLQLHGQRMVERDFA------P 258 (320)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SCCHHHHHHHHTTS-TTCBHHHHTHHHHHHTTCCC------C
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHcc-cccCHHHHHhhhhhccCCCC------C
Confidence 37789999999999999999999999999853 39999999999987 46788887765554433211 1
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 010702 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTY 444 (503)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~ 444 (503)
.|. +.-...+++.++..|-+.|+|+|...++...|...
T Consensus 259 gf~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a 296 (320)
T 4dll_A 259 RAR--LSIQLKDMRNALATAQEIGFDAPITGLFEQLYAEG 296 (320)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ccc--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 121 11233456789999999999999999998866643
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00067 Score=68.00 Aligned_cols=112 Identities=18% Similarity=0.122 Sum_probs=68.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC---------CcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG---------FPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSV 76 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G---------~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvI 76 (503)
+||||||+|.||+.++..+.++. .+| .++||++++.+.+ . ....++|+++++ + .|+|
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~-----~----~~~~~~d~~~ll-~---iDvV 70 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAI-----P----QELLRAEPFDLL-E---ADLV 70 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSS-----C----GGGEESSCCCCT-T---CSEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhcc-----C----cccccCCHHHHh-C---CCEE
Confidence 58999999999999999998763 454 5779987643221 0 013466777777 4 9999
Q ss_pred EEecCCChhHHHHHHHHHhcCCCCCEEEecCCCCh--hhHHHHHHHHHhcCccEecccCCCC
Q 010702 77 IILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY--LNTERRIHEASQKGLLYLGMGVSGG 136 (503)
Q Consensus 77 il~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~--~~t~~~~~~l~~~gi~~i~~pvsgg 136 (503)
+.|+|......+.+.. .|..|+-|+..+ -.+ ....++.+..+++ ..++++-+.+|
T Consensus 71 ve~t~~~~~a~~~~~~---AL~aGKhVVtaN-kkpla~~~~eL~~~A~~~-~~~~Ea~vg~g 127 (332)
T 2ejw_A 71 VEAMGGVEAPLRLVLP---ALEAGIPLITAN-KALLAEAWESLRPFAEEG-LIYHEASVMAG 127 (332)
T ss_dssp EECCCCSHHHHHHHHH---HHHTTCCEEECC-HHHHHHSHHHHHHHHHTT-CEECGGGTTTT
T ss_pred EECCCCcHHHHHHHHH---HHHcCCeEEECC-chhHHHHHHHHHHHHHhC-CeEEEEEcccC
Confidence 9999986443444433 345677777542 222 2233444443444 33445444444
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00041 Score=65.02 Aligned_cols=80 Identities=14% Similarity=0.136 Sum_probs=54.8
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE-KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~-~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|+|||+|.+|..++..+.. .|+++. ++|.++++....... ..+...++++++++. +.|.|++|+|..
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~g~~i~g------v~V~~~~dl~ell~~--~ID~ViIA~Ps~- 151 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRG------GVIEHVDLLPQRVPG--RIEIALLTVPRE- 151 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETT------EEEEEGGGHHHHSTT--TCCEEEECSCHH-
T ss_pred CEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHHhhhhcC------CeeecHHhHHHHHHc--CCCEEEEeCCch-
Confidence 579999999999999985321 277754 679998865432211 124456677887764 489999999985
Q ss_pred hHHHHHHHHHh
Q 010702 85 PVDQTIAALSE 95 (503)
Q Consensus 85 ~v~~vl~~l~~ 95 (503)
...++.+.+..
T Consensus 152 ~~~ei~~~l~~ 162 (211)
T 2dt5_A 152 AAQKAADLLVA 162 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 44556655543
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0017 Score=65.16 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=58.7
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhC-CCcEEEE-eCCh--hHHHHHHHhhcc-cCCCCeeeeC--CHHHHHhccCCCcEEE
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEK-GFPISVY-NRTT--SKVDETLDRAHR-EGQLPLTGHY--TPRDFVLSIQRPRSVI 77 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~-G~~V~v~-dr~~--~~~~~l~~~~~~-~g~~~i~~~~--s~~e~~~~l~~~dvIi 77 (503)
|+||+|+| .|.+|..|.+.|.++ .+++... .++. ..-+.+.+.... .+...+.... +.+++.++ +|+||
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~---~Dvvf 80 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPG---VDVVF 80 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTT---CSEEE
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcC---CCEEE
Confidence 46999999 599999999999985 4576655 3331 111111111000 0000122222 44444344 99999
Q ss_pred EecCCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+|+|.+ ...+....+. ..|..|||.|+..
T Consensus 81 ~a~p~~-~s~~~~~~~~---~~g~~vIDlSa~f 109 (337)
T 3dr3_A 81 LATAHE-VSHDLAPQFL---EAGCVVFDLSGAF 109 (337)
T ss_dssp ECSCHH-HHHHHHHHHH---HTTCEEEECSSTT
T ss_pred ECCChH-HHHHHHHHHH---HCCCEEEEcCCcc
Confidence 999985 4455555543 4789999999875
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.003 Score=59.36 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=51.3
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCH-HHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-REGQLPLTGHYTP-RDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~-~e~~~~l~~~dvIil~vp~ 82 (503)
.|+|.|.|. |.+|+.+++.|++.|++|.+.+|++++.+.+...+. . +. ..|+ +++.+.+..+|+||.+...
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~-----~~-~~Dl~~~~~~~~~~~D~vi~~ag~ 94 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASD-----IV-VANLEEDFSHAFASIDAVVFAAGS 94 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSE-----EE-ECCTTSCCGGGGTTCSEEEECCCC
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCce-----EE-EcccHHHHHHHHcCCCEEEECCCC
Confidence 468999996 999999999999999999999999998877765432 1 11 1111 2333334458888887654
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0014 Score=66.35 Aligned_cols=94 Identities=12% Similarity=0.236 Sum_probs=57.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCC-CcEEEEeCChh----HHHHHHHh--------hcccCCCCeeeeCCHHHHHh-ccC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKG-FPISVYNRTTS----KVDETLDR--------AHREGQLPLTGHYTPRDFVL-SIQ 71 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G-~~V~v~dr~~~----~~~~l~~~--------~~~~g~~~i~~~~s~~e~~~-~l~ 71 (503)
+||+|+| .|.+|+.+++.|.++. ++|...++++. ..+..... +... ..+. ..+++++.+ .
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~-- 83 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKD--MVVI-PTDPKHEEFED-- 83 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHT--CBCE-ESCTTSGGGTT--
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCcee--eEEE-eCCHHHHhcCC--
Confidence 5899999 8999999999998875 57765643221 12211100 0000 0111 124555444 4
Q ss_pred CCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 72 RPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 72 ~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+|+||+|+|.. ...+....++ ..|..|||.++..
T Consensus 84 -~DvV~~atp~~-~~~~~a~~~~---~aG~~VId~s~~~ 117 (354)
T 1ys4_A 84 -VDIVFSALPSD-LAKKFEPEFA---KEGKLIFSNASAY 117 (354)
T ss_dssp -CCEEEECCCHH-HHHHHHHHHH---HTTCEEEECCSTT
T ss_pred -CCEEEECCCch-HHHHHHHHHH---HCCCEEEECCchh
Confidence 99999999985 4454555544 4688899998763
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0031 Score=61.38 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=57.5
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|||.|. +|.++|..|...|.+|+++++.. .++++.+.. +|+||.+++.+..
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 217 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------------------TDLKSHTTK---ADILIVAVGKPNF 217 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SSHHHHHTT---CSEEEECCCCTTC
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHhccc---CCEEEECCCCCCC
Confidence 5799999877 79999999999999999998642 245566666 9999999987533
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+. ...+++|.+|||.+..
T Consensus 218 I~------~~~vk~GavVIDvgi~ 235 (285)
T 3l07_A 218 IT------ADMVKEGAVVIDVGIN 235 (285)
T ss_dssp BC------GGGSCTTCEEEECCCE
T ss_pred CC------HHHcCCCcEEEEeccc
Confidence 22 1457899999999864
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0031 Score=61.41 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=57.8
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|||.|. +|.++|..|...|.+|++++++. .++++.+.. +|+||.+++....
T Consensus 161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 216 (285)
T 3p2o_A 161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLSLYTRQ---ADLIIVAAGCVNL 216 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SCHHHHHTT---CSEEEECSSCTTC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHHhhc---CCEEEECCCCCCc
Confidence 5799999877 79999999999999999998642 245666666 9999999987533
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+. ...+++|.+|||.+..
T Consensus 217 I~------~~~vk~GavVIDVgi~ 234 (285)
T 3p2o_A 217 LR------SDMVKEGVIVVDVGIN 234 (285)
T ss_dssp BC------GGGSCTTEEEEECCCE
T ss_pred CC------HHHcCCCeEEEEeccC
Confidence 22 1457899999999864
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.004 Score=61.02 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=58.4
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|||.|. +|.++|+.|...|.+|++++++. .++++.+.. +|+||.+++.+..
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 221 (301)
T 1a4i_A 166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT---------------------AHLDEEVNK---GDILVVATGQPEM 221 (301)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SSHHHHHTT---CSEEEECCCCTTC
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc---------------------ccHHHHhcc---CCEEEECCCCccc
Confidence 5799999995 79999999999999999997442 355666666 9999999987642
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ...+++|.+|||.+...
T Consensus 222 I~------~~~vk~GavVIDVgi~~ 240 (301)
T 1a4i_A 222 VK------GEWIKPGAIVIDCGINY 240 (301)
T ss_dssp BC------GGGSCTTCEEEECCCBC
T ss_pred CC------HHHcCCCcEEEEccCCC
Confidence 21 13467999999998764
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00067 Score=63.44 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=55.8
Q ss_pred CcEEEEcccHHHHHHHHHH--HhCCCcEE-EEeCChh-HHHH-HHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGLAVMGQNLALNV--AEKGFPIS-VYNRTTS-KVDE-TLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L--~~~G~~V~-v~dr~~~-~~~~-l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.+|+|||+|.+|..++..+ ...|+++. ++|.+++ +... ... + ..+...++++++++. ...|.+++|+|
T Consensus 85 ~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~-G-----vpV~~~~dL~~~v~~-~~Id~vIIAvP 157 (212)
T 3keo_A 85 TNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTED-G-----IPVYGISTINDHLID-SDIETAILTVP 157 (212)
T ss_dssp EEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTT-C-----CBEEEGGGHHHHC-C-CSCCEEEECSC
T ss_pred CEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeEC-C-----eEEeCHHHHHHHHHH-cCCCEEEEecC
Confidence 4799999999999999873 45677755 6799987 6432 111 1 234455667777664 24899999999
Q ss_pred CChhHHHHHHHHHh
Q 010702 82 AGSPVDQTIAALSE 95 (503)
Q Consensus 82 ~~~~v~~vl~~l~~ 95 (503)
.. ...++.+.+.+
T Consensus 158 s~-~aq~v~d~lv~ 170 (212)
T 3keo_A 158 ST-EAQEVADILVK 170 (212)
T ss_dssp GG-GHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHH
Confidence 85 55667776664
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0061 Score=56.65 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=49.3
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
||+|.|.| .|.+|+.++..|++.|++|.+.+|++++.+.+.. .. .+.. ..+.+++.+.++.+|+||.+...
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~-----~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENE-HL-----KVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCT-TE-----EEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccC-ce-----EEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 57899999 5999999999999999999999999876433211 10 0111 12444444444558999888754
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0047 Score=64.97 Aligned_cols=71 Identities=8% Similarity=0.106 Sum_probs=47.7
Q ss_pred CcEEEEcccHHHHH--HHHHHHhC------CCcEEEEeCChhHHHHHHH---hhc-ccC-CCCeeeeCCHHHHHhccCCC
Q 010702 7 SRIGLAGLAVMGQN--LALNVAEK------GFPISVYNRTTSKVDETLD---RAH-REG-QLPLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 7 ~~IgIIGlG~mG~~--lA~~L~~~------G~~V~v~dr~~~~~~~l~~---~~~-~~g-~~~i~~~~s~~e~~~~l~~~ 73 (503)
|||+|||.|..|.+ +...++.. +-+|.++|+++++++.... ... ..+ ..++..+++.+++++. +
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~g---A 77 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEG---A 77 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTT---C
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCC---C
Confidence 58999999998855 33334421 3479999999987654221 110 000 1257778899998887 9
Q ss_pred cEEEEec
Q 010702 74 RSVIILV 80 (503)
Q Consensus 74 dvIil~v 80 (503)
|+||+++
T Consensus 78 D~Vi~~~ 84 (477)
T 3u95_A 78 DFIINTA 84 (477)
T ss_dssp SEEEECC
T ss_pred CEEEECc
Confidence 9999986
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0041 Score=60.59 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=57.8
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|||.|. +|.++|+.|...|.+|+++++.. .++.+.+.. +|+||.+++....
T Consensus 160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~L~~~~~~---ADIVI~Avg~p~l 215 (288)
T 1b0a_A 160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------------------KNLRHHVEN---ADLLIVAVGKPGF 215 (288)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------------------SCHHHHHHH---CSEEEECSCCTTC
T ss_pred CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHHhcc---CCEEEECCCCcCc
Confidence 5799999996 69999999999999999997543 356666666 9999999987642
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+. ...+++|.+|||.+..
T Consensus 216 I~------~~~vk~GavVIDVgi~ 233 (288)
T 1b0a_A 216 IP------GDWIKEGAIVIDVGIN 233 (288)
T ss_dssp BC------TTTSCTTCEEEECCCE
T ss_pred CC------HHHcCCCcEEEEccCC
Confidence 11 1246899999999865
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.039 Score=52.61 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=51.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
|||+|+|+ |.||+.++..+.+. |++|. ++|++. +++++.. ..+|+||-+.++.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~----------------------dl~~~~~--~~~DvvIDfT~p~ 56 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGD----------------------PLSLLTD--GNTEVVIDFTHPD 56 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTC----------------------CTHHHHH--TTCCEEEECSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCC----------------------CHHHHhc--cCCcEEEEccChH
Confidence 48999996 99999999998865 88876 566541 2344443 1289999676554
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhh
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLN 113 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~ 113 (503)
.+.+.+.... ..|.-+|-++|+....
T Consensus 57 -a~~~~~~~a~---~~g~~~VigTTG~~~e 82 (245)
T 1p9l_A 57 -VVMGNLEFLI---DNGIHAVVGTTGFTAE 82 (245)
T ss_dssp -THHHHHHHHH---HTTCEEEECCCCCCHH
T ss_pred -HHHHHHHHHH---HcCCCEEEcCCCCCHH
Confidence 4555554433 3566666666665443
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0041 Score=60.34 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=57.1
Q ss_pred CcEEEEcccHH-HHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVM-GQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~m-G~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+++.|||.|.| |.++|..|... |.+|++++++. .++.+.+.. +|+||.+++.+
T Consensus 159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t---------------------~~L~~~~~~---ADIVI~Avg~p 214 (281)
T 2c2x_A 159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT---------------------RDLPALTRQ---ADIVVAAVGVA 214 (281)
T ss_dssp CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC---------------------SCHHHHHTT---CSEEEECSCCT
T ss_pred CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch---------------------hHHHHHHhh---CCEEEECCCCC
Confidence 57999999975 99999999999 88999997553 245556665 99999999876
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..+. ...+++|.+|||.+..
T Consensus 215 ~~I~------~~~vk~GavVIDVgi~ 234 (281)
T 2c2x_A 215 HLLT------ADMVRPGAAVIDVGVS 234 (281)
T ss_dssp TCBC------GGGSCTTCEEEECCEE
T ss_pred cccC------HHHcCCCcEEEEccCC
Confidence 4211 1346789999999865
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0049 Score=59.93 Aligned_cols=74 Identities=23% Similarity=0.284 Sum_probs=57.9
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++.|||.|. +|+++|..|...|.+|+++++.. .++++.+.. +|+||.+++.+..
T Consensus 162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T---------------------~~L~~~~~~---ADIVI~Avg~p~~ 217 (286)
T 4a5o_A 162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT---------------------RDLADHVSR---ADLVVVAAGKPGL 217 (286)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC---------------------SCHHHHHHT---CSEEEECCCCTTC
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC---------------------cCHHHHhcc---CCEEEECCCCCCC
Confidence 5799999875 89999999999999999997532 245666666 9999999987533
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+. ...+++|.+|||.+...
T Consensus 218 I~------~~~vk~GavVIDvgi~~ 236 (286)
T 4a5o_A 218 VK------GEWIKEGAIVIDVGINR 236 (286)
T ss_dssp BC------GGGSCTTCEEEECCSCS
T ss_pred CC------HHHcCCCeEEEEecccc
Confidence 22 14578999999998653
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0054 Score=55.81 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=47.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|+|.|+|. |.+|+.+++.|++.|++|.+.+|++++.+.+.... ..+.. ..+.+++.+.++.+|+||.+...
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~ 77 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRP-----AHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCC-----SEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCc-----eEEEEecCCCHHHHHHHHcCCCEEEECccC
Confidence 68999997 99999999999999999999999987543211100 00111 12334444444457888877654
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0043 Score=62.50 Aligned_cols=96 Identities=7% Similarity=0.145 Sum_probs=57.2
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|+||+|+| .|.+|+.+.+.|.++.. ++....+....-.++.+.... .+...+. ..++++ +..+|+||+|+|.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~-~~~~~~----~~~vDvV~~a~g~ 78 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLK-FVPPEK----LEPADILVLALPH 78 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCB-CBCGGG----CCCCSEEEECCCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccc-ccchhH----hcCCCEEEEcCCc
Confidence 46899999 69999999999998764 666554432221111110000 0000111 223332 3459999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.. ..+....+ +..|..|||.|+..
T Consensus 79 ~~-s~~~a~~~---~~aG~~VId~Sa~~ 102 (345)
T 2ozp_A 79 GV-FAREFDRY---SALAPVLVDLSADF 102 (345)
T ss_dssp TH-HHHTHHHH---HTTCSEEEECSSTT
T ss_pred HH-HHHHHHHH---HHCCCEEEEcCccc
Confidence 73 44444444 35788999999864
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.028 Score=57.99 Aligned_cols=105 Identities=16% Similarity=0.131 Sum_probs=65.2
Q ss_pred CCcEEEEcccHH-HHHHHHHHHh--C---CCcEEEEeCChhHHHHHHHhh---cccCCCCeeeeCCHHHHHhccCCCcEE
Q 010702 6 LSRIGLAGLAVM-GQNLALNVAE--K---GFPISVYNRTTSKVDETLDRA---HREGQLPLTGHYTPRDFVLSIQRPRSV 76 (503)
Q Consensus 6 ~~~IgIIGlG~m-G~~lA~~L~~--~---G~~V~v~dr~~~~~~~l~~~~---~~~g~~~i~~~~s~~e~~~~l~~~dvI 76 (503)
++||+|||+|.. +..+...|+. . +.+|.++|+++++++...... ... ..++..+.+..+.+++ +|+|
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~-~~~v~~t~d~~~al~~---AD~V 77 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKD-RFKVLISDTFEGAVVD---AKYV 77 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTT-SSEEEECSSHHHHHTT---CSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhC-CeEEEEeCCHHHHhCC---CCEE
Confidence 469999999984 2222234454 3 567999999998865422111 111 0145566777677676 9999
Q ss_pred EEecCCCh-----------------------------------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHH
Q 010702 77 IILVKAGS-----------------------------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTER 116 (503)
Q Consensus 77 il~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~ 116 (503)
|++.-.+. .+.++++.+.++. +.++|+.||-....|..
T Consensus 78 iitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin~TNPvdi~t~a 150 (417)
T 1up7_A 78 IFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVNFTNPSGHITEF 150 (417)
T ss_dssp EECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEECSSSHHHHHHH
T ss_pred EEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEEeCChHHHHHHH
Confidence 99984431 1334445665544 88999998865444433
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0062 Score=56.43 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=50.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCC-HHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYT-PRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s-~~e~~~~l~~~dvIil~vp~ 82 (503)
|+|.|.| .|.+|+.++..|++.|++|.+.+|++++.+.+ .+. .+.. ..+ .+++.+.++.+|+||.+...
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--~~~-----~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~ 73 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY--NNV-----KAVHFDVDWTPEEMAKQLHGMDAIINVSGS 73 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC--TTE-----EEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc--CCc-----eEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence 4899998 79999999999999999999999998764432 111 0111 123 55666666678999988754
Q ss_pred C
Q 010702 83 G 83 (503)
Q Consensus 83 ~ 83 (503)
.
T Consensus 74 ~ 74 (219)
T 3dqp_A 74 G 74 (219)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0076 Score=59.14 Aligned_cols=127 Identities=11% Similarity=0.153 Sum_probs=70.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.+|.|||+|..|+.+|.+|++.|. +++++|.+.=....+..........+...+....+.+..+ .+++-|...+..-.
T Consensus 37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~i-NP~v~v~~~~~~l~ 115 (292)
T 3h8v_A 37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNI-NPDVLFEVHNYNIT 115 (292)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHH-CTTSEEEEECCCTT
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhh-CCCcEEEEecccCC
Confidence 589999999999999999999996 7999998863333332211000000001111222222222 16666766654321
Q ss_pred HHHHHHHHHh-----cC---CCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 86 VDQTIAALSE-----HM---SPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 86 v~~vl~~l~~-----~l---~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
-.+.++.+.. .+ ..-++|||++-.. ..-..+.+.+...++-|+.+++++
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~-~~R~~in~~c~~~~~Pli~~gv~~ 172 (292)
T 3h8v_A 116 TVENFQHFMDRISNGGLEEGKPVDLVLSCVDNF-EARMTINTACNELGQTWMESGVSE 172 (292)
T ss_dssp SHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSH-HHHHHHHHHHHHHTCCEEEEEECT
T ss_pred cHHHHHHHhhhhcccccccCCCCCEEEECCcch-hhhhHHHHHHHHhCCCEEEeeeec
Confidence 1122333321 11 3568999987653 333345566677788888887775
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0068 Score=61.36 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=55.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCC--CCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQ--LPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~--~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
+||+|+| .|.+|+.+.+.|.++.. ++...+...+.-.++...... .+. ..+... + ++..+. +|+||+|+|
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~-~-~~~~~~---vDvVf~atp 91 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSV-K-DADFST---VDAVFCCLP 91 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCG-G-GCCGGG---CSEEEECCC
T ss_pred cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceec-c-hhHhcC---CCEEEEcCC
Confidence 4899999 89999999999998764 666554333221112111100 000 011111 1 222233 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.+.. .+.. ..+ ..|..|||.|+..
T Consensus 92 ~~~s-~~~a---~~~-~aG~~VId~sa~~ 115 (359)
T 1xyg_A 92 HGTT-QEII---KEL-PTALKIVDLSADF 115 (359)
T ss_dssp TTTH-HHHH---HTS-CTTCEEEECSSTT
T ss_pred chhH-HHHH---HHH-hCCCEEEECCccc
Confidence 8743 2222 234 6789999999865
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0083 Score=60.69 Aligned_cols=34 Identities=9% Similarity=0.229 Sum_probs=26.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC----CcE-EEEeCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG----FPI-SVYNRTT 39 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G----~~V-~v~dr~~ 39 (503)
+++|||||+|.||+.++..|.+.. .+| .++|++.
T Consensus 4 ~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~ 42 (358)
T 1ebf_A 4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAER 42 (358)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSB
T ss_pred eEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECCh
Confidence 468999999999999999999863 454 4567543
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0069 Score=63.12 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=66.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-C---cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-F---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~---~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.+||.|||+|.||+.+|..|+++. + +|++.|++.... +..+... .+++...|.
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~-------------------~~~~~~g----~~~~~~~Vd 69 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV-------------------DVAQQYG----VSFKLQQIT 69 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC-------------------CHHHHHT----CEEEECCCC
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhh-------------------hHHhhcC----CceeEEecc
Confidence 468999999999999999999864 4 688888664321 1122111 344444454
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGV 133 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pv 133 (503)
++ .+++++.. .+.++++||+.+ .+.....+.+.+.+.|++|+|...
T Consensus 70 ad-nv~~~l~a---Ll~~~DvVIN~s--~~~~~l~Im~acleaGv~YlDTa~ 115 (480)
T 2ph5_A 70 PQ-NYLEVIGS---TLEENDFLIDVS--IGISSLALIILCNQKGALYINAAT 115 (480)
T ss_dssp TT-THHHHTGG---GCCTTCEEEECC--SSSCHHHHHHHHHHHTCEEEESSC
T ss_pred ch-hHHHHHHH---HhcCCCEEEECC--ccccCHHHHHHHHHcCCCEEECCC
Confidence 43 34444443 344569999865 344667788888888999999754
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.043 Score=53.28 Aligned_cols=106 Identities=18% Similarity=0.212 Sum_probs=79.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchh
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~ 404 (503)
.+.++.+|.++|.+.+..+..++|++.+.++. ++|.+++.++.+.| ...|++++.....+.+.+.. +
T Consensus 164 ~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~------~ 230 (287)
T 3pdu_A 164 VGQGARMKLVVNMIMGQMMTALGEGMALGRNC------GLDGGQLLEVLDAG-AMANPMFKGKGQMLLSGEFP------T 230 (287)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHS-TTCCHHHHHHHHHHHHTCCC------C
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-cccChHHHhhccccccCCCC------C
Confidence 36788999999999999999999999998853 39999999999987 35677777665555443211 1
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010702 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (503)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (503)
.|. +.....+++.++..|-+.|+|+|.+.++...|....
T Consensus 231 ~~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 269 (287)
T 3pdu_A 231 SFP--LKHMQKDLRLAVELGDRLGQPLHGAATANESFKRAR 269 (287)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CCc--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 121 223344579999999999999999999888665433
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.01 Score=59.44 Aligned_cols=99 Identities=11% Similarity=0.146 Sum_probs=61.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeC--ChhHHHHHHHhhcccCCC----------------Ceeee--CCH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNR--TTSKVDETLDRAHREGQL----------------PLTGH--YTP 63 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr--~~~~~~~l~~~~~~~g~~----------------~i~~~--~s~ 63 (503)
|.||||+|.|.+|+.+++.|.++ +.+|. +.|+ +++....+.+.....|.+ .+... .++
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~ 82 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP 82 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred ceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCH
Confidence 46999999999999999998875 46765 5564 677666665421100000 01112 255
Q ss_pred HHHH-hccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 64 RDFV-LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 64 ~e~~-~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+++- .. ..+|+|++|+|.....+ ....++..|..+|++|..
T Consensus 83 ~~l~~~~-~~vDvV~eatg~~~~~e----~a~~~l~aGak~V~iSap 124 (335)
T 1u8f_O 83 SKIKWGD-AGAEYVVESTGVFTTME----KAGAHLQGGAKRVIISAP 124 (335)
T ss_dssp GGCCTTT-TTCCEEEECSSSCCSHH----HHGGGGGGTCSEEEESSC
T ss_pred HHCcccc-CCCCEEEECCCchhhHH----HHHHHHhCCCeEEEeccC
Confidence 5541 10 23899999999875432 233556778777777764
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.21 E-value=0.014 Score=58.47 Aligned_cols=95 Identities=19% Similarity=0.247 Sum_probs=57.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeC--ChhHHHHHHHhhcccCCC------------------Ceeee--CC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNR--TTSKVDETLDRAHREGQL------------------PLTGH--YT 62 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr--~~~~~~~l~~~~~~~g~~------------------~i~~~--~s 62 (503)
+||||+|.|.+|+.+++.|.++ +++|. +.|+ +++....+.+.....|.+ .+... .+
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~d 83 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRN 83 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCSC
T ss_pred eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecCC
Confidence 5999999999999999999886 45655 4453 555555554211100000 01112 25
Q ss_pred HHHH-H--hccCCCcEEEEecCCChhHHHHHHHHHhcCCCCC--EEEecCC
Q 010702 63 PRDF-V--LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGD--CIIDGGN 108 (503)
Q Consensus 63 ~~e~-~--~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~--iIId~st 108 (503)
++++ . .. +|+|+.|+|..... +..... +..|. +|||.+.
T Consensus 84 p~~l~w~~~~---vDvV~eaTg~~~~~-e~a~~~---l~aGak~VVIs~pa 127 (337)
T 3e5r_O 84 PDEIPWAEAG---AEYVVESTGVFTDK-EKAAAH---LKGGAKKVVISAPS 127 (337)
T ss_dssp GGGCCHHHHT---CSEEEECSSSCCSH-HHHTHH---HHTTCSEEEESSCC
T ss_pred hHHccccccC---CCEEEECCCchhhH-HHHHHH---HHcCCCEEEEecCC
Confidence 6654 1 23 89999999987543 333333 34565 8888875
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.004 Score=57.75 Aligned_cols=34 Identities=15% Similarity=0.420 Sum_probs=31.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
.+|.|||+|.-|.+.|..|+++|++|+++++++.
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~ 36 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRG 36 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 5799999999999999999999999999998753
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.04 Score=55.32 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=63.3
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChhH--HH----HHHHhhcccCCCCeeeeCCHHHHHhccCCC
Q 010702 8 RIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VD----ETLDRAHREGQLPLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 8 ~IgIIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~~----~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~ 73 (503)
||+|+|+ |.+|.+++..|+.... ++.+||+++.. ++ ++.. .......++....++.+.+++ +
T Consensus 26 KVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~-~~~~~~~~~~~~~~~~~a~~~---a 101 (345)
T 4h7p_A 26 KVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELED-CAFPLLDKVVVTADPRVAFDG---V 101 (345)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHH-TTCTTEEEEEEESCHHHHTTT---C
T ss_pred EEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhh-cCccCCCcEEEcCChHHHhCC---C
Confidence 8999996 9999999999998653 69999998642 22 1221 111000034566677776666 9
Q ss_pred cEEEEecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 74 RSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 74 dvIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
|+||++--. +. .++++.+.+..+..++.+|+-.||.
T Consensus 102 dvVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNP 152 (345)
T 4h7p_A 102 AIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNP 152 (345)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCC
Confidence 999997521 11 2334445666666677777777774
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0039 Score=62.95 Aligned_cols=94 Identities=15% Similarity=0.178 Sum_probs=57.3
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCC-----C-cEEEEe-C-ChhH-HHHHHHh--hcccCCCCeeeeCCHHHHHhccCCC
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKG-----F-PISVYN-R-TTSK-VDETLDR--AHREGQLPLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G-----~-~V~v~d-r-~~~~-~~~l~~~--~~~~g~~~i~~~~s~~e~~~~l~~~ 73 (503)
|+||+|+| .|.+|+.+.+.|.+++ . +|..+. + +..+ ....... +... ..+. ..+.+++ .. +
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~--~~~~-~~~~~~~-~~---~ 81 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAH--RVVE-PTEAAVL-GG---H 81 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTT--CBCE-ECCHHHH-TT---C
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccce--eeec-cCCHHHh-cC---C
Confidence 35899999 8999999999999987 3 566554 3 2222 1110000 0000 0121 1234443 34 9
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
|+||+|+|.+. ..+.+..+ ..|..|||.|+..-
T Consensus 82 DvVf~alg~~~-s~~~~~~~----~~G~~vIDlSa~~R 114 (352)
T 2nqt_A 82 DAVFLALPHGH-SAVLAQQL----SPETLIIDCGADFR 114 (352)
T ss_dssp SEEEECCTTSC-CHHHHHHS----CTTSEEEECSSTTT
T ss_pred CEEEECCCCcc-hHHHHHHH----hCCCEEEEECCCcc
Confidence 99999999863 34444433 56899999998764
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.027 Score=54.34 Aligned_cols=86 Identities=14% Similarity=0.229 Sum_probs=57.5
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.|+.+| | .|-+|..+|+.|++.|++|.+.+|+++..+++.+... +.-.. ...+..=+.+..
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--------------~~~~~---~~~~~~Dv~d~~ 90 (270)
T 3ftp_A 28 KQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFK--------------QAGLE---GRGAVLNVNDAT 90 (270)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH--------------HHTCC---CEEEECCTTCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------hcCCc---EEEEEEeCCCHH
Confidence 355565 4 6899999999999999999999999987766554311 10001 233333345555
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++++.....+=+++|++...
T Consensus 91 ~v~~~~~~~~~~~g~iD~lvnnAg~ 115 (270)
T 3ftp_A 91 AVDALVESTLKEFGALNVLVNNAGI 115 (270)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 6777777776655555788887653
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.018 Score=56.56 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=31.8
Q ss_pred CCCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 4 SALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 4 ~~~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
++||+|.|+|. |.+|+.++..|++.|++|.+.+|++
T Consensus 2 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 2 SHMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp --CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred CcccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence 35678999995 9999999999999999999999986
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.018 Score=56.43 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=47.1
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChh-HHHHH---HHhhcccCCCCeee--eCCHHHHHhccCCCcEEE
Q 010702 5 ALSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTS-KVDET---LDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 5 ~~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l---~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIi 77 (503)
|+++|.|+|. |.+|+.++..|++.|++|.+.+|+++ +.+.+ ...+. .+.. ..+.+++.+.++.+|+||
T Consensus 10 m~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v-----~~v~~Dl~d~~~l~~a~~~~d~vi 84 (318)
T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGA-----IIVKGELDEHEKLVELMKKVDVVI 84 (318)
T ss_dssp CCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTC-----EEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CCCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCC-----EEEEecCCCHHHHHHHHcCCCEEE
Confidence 3458999995 99999999999999999999999874 33222 22211 1111 123444444444578887
Q ss_pred EecC
Q 010702 78 ILVK 81 (503)
Q Consensus 78 l~vp 81 (503)
.+..
T Consensus 85 ~~a~ 88 (318)
T 2r6j_A 85 SALA 88 (318)
T ss_dssp ECCC
T ss_pred ECCc
Confidence 7764
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.023 Score=55.37 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=47.8
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCC-----hhHHHHHHHhhcccCCCCeee----eCCHHHHHhccCCCcE
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRT-----TSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRS 75 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~-----~~~~~~l~~~~~~~g~~~i~~----~~s~~e~~~~l~~~dv 75 (503)
+|+|.|+| .|.+|+.++..|++.|++|.+.+|+ +++.+.+.... .. ++.. ..+++.+.+.++.+|+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~-~~---~~~~~~~D~~d~~~l~~~~~~~d~ 79 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK-QL---GAKLIEASLDDHQRLVDALKQVDV 79 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH-TT---TCEEECCCSSCHHHHHHHHTTCSE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHH-hC---CeEEEeCCCCCHHHHHHHHhCCCE
Confidence 46899998 5999999999999999999999998 44443332110 00 1111 1244444444445788
Q ss_pred EEEecCC
Q 010702 76 VIILVKA 82 (503)
Q Consensus 76 Iil~vp~ 82 (503)
||.+...
T Consensus 80 vi~~a~~ 86 (313)
T 1qyd_A 80 VISALAG 86 (313)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 8877653
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.023 Score=54.89 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=49.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|+|.|.| .|.+|+.++..|.+. |++|.+.+|++++...+...+.. +.. ..+++++.+.++.+|+||.+...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~-----~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVS-----VRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBE-----EEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCE-----EEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 5799999 599999999999998 99999999998875544322211 111 12445555555568888887654
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0057 Score=59.96 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=44.4
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 5 ALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 5 ~~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|+|+|.|.| .|.+|+.++..|++.|++|.+.+|++...+ +. +.. -+...-+.+++.+.++.+|+||-+..
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~--~~~----~~~~Dl~~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-IN--DYE----YRVSDYTLEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC--------CCE----EEECCCCHHHHHHHTTTCSEEEECCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CC--ceE----EEEccccHHHHHHhhcCCCEEEEccc
Confidence 457899998 699999999999999999999999955443 32 110 01111123333333445888887764
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.023 Score=60.02 Aligned_cols=111 Identities=18% Similarity=0.221 Sum_probs=69.2
Q ss_pred CcEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCC
Q 010702 7 SRIGLAGLAVMGQN-LALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~ 82 (503)
++|.|||+|..|.+ +|+.|.+.|++|+++|..+. ..+.+.+.+.. +..-.+++. +. .+|+||.+ +|.
T Consensus 23 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~-----~~~g~~~~~-~~---~~d~vV~Spgi~~ 93 (494)
T 4hv4_A 23 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQ-----IYFHHRPEN-VL---DASVVVVSTAISA 93 (494)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCE-----EESSCCGGG-GT---TCSEEEECTTSCT
T ss_pred CEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCE-----EECCCCHHH-cC---CCCEEEECCCCCC
Confidence 58999999999985 99999999999999997654 34555554421 222223333 23 38999886 454
Q ss_pred Chh-HHHHHH---------HHHh-cCCCC-CEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 83 GSP-VDQTIA---------ALSE-HMSPG-DCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 83 ~~~-v~~vl~---------~l~~-~l~~g-~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
+.+ +....+ +++. .++.. .|-|..|++...++.-+...|+..|.
T Consensus 94 ~~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~ 149 (494)
T 4hv4_A 94 DNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGL 149 (494)
T ss_dssp TCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCC
Confidence 322 222211 2222 22222 36666777776666667777777774
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.038 Score=54.38 Aligned_cols=103 Identities=11% Similarity=0.053 Sum_probs=72.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCc-chhhhHHHHHHHHhcCCCCCCCcchh
Q 010702 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCI-IRAVFLDRIKKAYQRNPNLASLVVDP 404 (503)
Q Consensus 326 ~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gci-i~s~lL~~i~~~~~~~~~~~~ll~~~ 404 (503)
+.++.+| .+.++.+..++|++.+.++. ++|.+++.++++.+.. .+|++++.....+.+.+....
T Consensus 174 g~g~~~k----~~~~~~~~~~~Ea~~la~~~------Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~----- 238 (306)
T 3l6d_A 174 AFATVLH----AHAFAAMVTFFEAVGAGDRF------GLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGD----- 238 (306)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTT-----
T ss_pred cHHHHHH----HHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCC-----
Confidence 4566666 67788999999999988753 4999999999987632 478887776555443321100
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 010702 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYR 445 (503)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~~ 445 (503)
.|. +.-...+++.++..|-+.|+|+|.+.++...|....
T Consensus 239 ~~~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 277 (306)
T 3l6d_A 239 QAR--LDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAA 277 (306)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred ccc--HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 111 112234568899999999999999999988766443
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.033 Score=52.35 Aligned_cols=78 Identities=12% Similarity=0.129 Sum_probs=52.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeeeC-CHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~-s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
++|-|||.|.+|..-+..|.+.|.+|++++++.. .++.+.+.+ ++.... ...+ +.|..+|+||.++.++
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~------~i~~i~~~~~~--~dL~~adLVIaAT~d~- 102 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKG------QLRVKRKKVGE--EDLLNVFFIVVATNDQ- 102 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTT------SCEEECSCCCG--GGSSSCSEEEECCCCT-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcC------CcEEEECCCCH--hHhCCCCEEEECCCCH-
Confidence 5899999999999999999999999999987653 345555443 122211 1111 2344599999886654
Q ss_pred hHHHHHHHH
Q 010702 85 PVDQTIAAL 93 (503)
Q Consensus 85 ~v~~vl~~l 93 (503)
.+...+...
T Consensus 103 ~~N~~I~~~ 111 (223)
T 3dfz_A 103 AVNKFVKQH 111 (223)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566555444
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.025 Score=54.26 Aligned_cols=83 Identities=16% Similarity=0.272 Sum_probs=57.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~~ 84 (503)
.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... .. .++.++ =+.+..
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~~~Dv~~~~ 73 (264)
T 3ucx_A 13 VVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTD----------------TG---RRALSVGTDITDDA 73 (264)
T ss_dssp EEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----------------TT---CCEEEEECCTTCHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHh----------------cC---CcEEEEEcCCCCHH
Confidence 355556 58899999999999999999999999887766543210 01 233333 244555
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++++.....+=+++|++...
T Consensus 74 ~v~~~~~~~~~~~g~id~lv~nAg~ 98 (264)
T 3ucx_A 74 QVAHLVDETMKAYGRVDVVINNAFR 98 (264)
T ss_dssp HHHHHHHHHHHHTSCCSEEEECCCS
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCC
Confidence 6777777777766666888887643
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.029 Score=54.42 Aligned_cols=81 Identities=10% Similarity=0.117 Sum_probs=55.9
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 8 ~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|++|| |.+-+|.++|+.|++.|.+|.+.+|+.+++++..++... . +-.+..=+.+..+
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~-----------------~---~~~~~~Dv~~~~~ 89 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGG-----------------G---AVGIQADSANLAE 89 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT-----------------T---CEEEECCTTCHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCC-----------------C---eEEEEecCCCHHH
Confidence 68888 467899999999999999999999999887776553210 0 2122222445556
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
++++++++.....+=|++|+...
T Consensus 90 v~~~~~~~~~~~G~iDiLVNNAG 112 (273)
T 4fgs_A 90 LDRLYEKVKAEAGRIDVLFVNAG 112 (273)
T ss_dssp HHHHHHHHHHHHSCEEEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 77777777665544467776654
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.027 Score=56.61 Aligned_cols=93 Identities=20% Similarity=0.297 Sum_probs=58.2
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCCh--h-HHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTT--S-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~--~-~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|-|||||| .|..|.-|.+.|.++.. ++....... . ++.+.......+ +.+.. .+.+++.++ +|++|+|+
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~--l~~~~-~~~~~~~~~---~Dvvf~al 86 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLEN--SILSE-FDPEKVSKN---CDVLFTAL 86 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCC--CBCBC-CCHHHHHHH---CSEEEECC
T ss_pred eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccC--ceEEe-CCHHHhhcC---CCEEEECC
Confidence 45899998 59999999999998853 555443221 1 122211100010 11222 256666555 99999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
|.+. . .++.+.+ .|..|||.|+.+
T Consensus 87 p~~~-s----~~~~~~~-~g~~VIDlSsdf 110 (351)
T 1vkn_A 87 PAGA-S----YDLVREL-KGVKIIDLGADF 110 (351)
T ss_dssp STTH-H----HHHHTTC-CSCEEEESSSTT
T ss_pred CcHH-H----HHHHHHh-CCCEEEECChhh
Confidence 9973 3 3445555 899999999865
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.037 Score=52.86 Aligned_cols=89 Identities=9% Similarity=0.040 Sum_probs=56.1
Q ss_pred CCcCCCC-cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 1 MEASALS-RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 1 M~~~~~~-~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
|+..+.. +|-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+... .. ..++..
T Consensus 1 M~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~ 60 (260)
T 1nff_A 1 MSGRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----------------DA---ARYVHL 60 (260)
T ss_dssp -CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----------------GG---EEEEEC
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----------------cC---ceEEEe
Confidence 5544433 466666 6999999999999999999999999887665543210 00 112222
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
=+.+...++.+++++...+.+=+++|++...
T Consensus 61 D~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~ 91 (260)
T 1nff_A 61 DVTQPAQWKAAVDTAVTAFGGLHVLVNNAGI 91 (260)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2334445666666666555455778876553
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.02 Score=55.65 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=31.5
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
|++|.|+|. |.+|+.++..|++.|++|.+.+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence 468999996 9999999999999999999999987
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.053 Score=53.61 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=58.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeC--ChhHHHH----HHHhhcccC-CCCeeeeC-CHHHHHhccCCCcE
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNR--TTSKVDE----TLDRAHREG-QLPLTGHY-TPRDFVLSIQRPRS 75 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~--~V~v~dr--~~~~~~~----l~~~~~~~g-~~~i~~~~-s~~e~~~~l~~~dv 75 (503)
|||.|+|+ |.+|.+++..|+..|+ ++.++|+ ++++.+. +.......+ ...+...+ ++.+++++ +|+
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~g---aD~ 77 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDE---SDV 77 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTT---CSE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCC---CCE
Confidence 58999999 9999999999998885 5889999 7654432 222111000 00122222 23444444 999
Q ss_pred EEEecCCC----h-----------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 76 VIILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 76 Iil~vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
||++.-.+ . .++++++.+..+- +.+|+..||..
T Consensus 78 Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~SNPv 125 (313)
T 1hye_A 78 VIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVITNPV 125 (313)
T ss_dssp EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECSSSH
T ss_pred EEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecCcH
Confidence 99986321 1 1223334554543 56777777643
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.048 Score=54.49 Aligned_cols=99 Identities=15% Similarity=0.060 Sum_probs=61.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCC--c-----EEEEeCChh--HHH----HHHHhhcccCCCCeeeeCCHHHHHhccCC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGF--P-----ISVYNRTTS--KVD----ETLDRAHREGQLPLTGHYTPRDFVLSIQR 72 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~--~-----V~v~dr~~~--~~~----~l~~~~~~~g~~~i~~~~s~~e~~~~l~~ 72 (503)
+||.|+| +|.+|.++|..|+..|. + +.++|+++. +++ ++..-.... ..++....+..+.+++
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~-~~~~~~~~~~~~~~~d--- 79 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATDKEEIAFKD--- 79 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEESCHHHHTTT---
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcc-cCCEEEcCCcHHHhCC---
Confidence 5899999 79999999999998886 5 999999752 322 222211000 0023445565555555
Q ss_pred CcEEEEecCCC---------------hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 73 PRSVIILVKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 73 ~dvIil~vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+|+||++.-.+ ..++++++.+..+-+++.+|+..||-
T Consensus 80 aDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNP 131 (333)
T 5mdh_A 80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNP 131 (333)
T ss_dssp CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 99999875211 12445556666665445457777764
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.042 Score=52.38 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=56.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+..=+.+...+
T Consensus 10 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~v 69 (259)
T 4e6p_A 10 SALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG-----------------PA---AYAVQMDVTRQDSI 69 (259)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----------------TT---EEEEECCTTCHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------CC---ceEEEeeCCCHHHH
Confidence 456666 5999999999999999999999999887766554310 00 11222223444567
Q ss_pred HHHHHHHHhcCCCCCEEEecCCC
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.+++++.....+=+++|++...
T Consensus 70 ~~~~~~~~~~~g~id~lv~~Ag~ 92 (259)
T 4e6p_A 70 DAAIAATVEHAGGLDILVNNAAL 92 (259)
T ss_dssp HHHHHHHHHHSSSCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 77777777666566788887654
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.04 Score=58.56 Aligned_cols=113 Identities=13% Similarity=0.101 Sum_probs=71.0
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhCCCcEEEEeCCh--hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--c
Q 010702 6 LSRIGLAGLAVMGQN-LALNVAEKGFPISVYNRTT--SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--V 80 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~-lA~~L~~~G~~V~v~dr~~--~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--v 80 (503)
.++|-|||.|..|.+ +|+.|.+.|++|+++|.+. ...+.+.+.+.. +..-.+++.+... +|+||.+ +
T Consensus 19 ~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~-----~~~G~~~~~~~~~---~d~vV~Spgi 90 (524)
T 3hn7_A 19 GMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVT-----IEEGYLIAHLQPA---PDLVVVGNAM 90 (524)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCE-----EEESCCGGGGCSC---CSEEEECTTC
T ss_pred CCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCE-----EECCCCHHHcCCC---CCEEEECCCc
Confidence 368999999999985 8999999999999999863 345566655431 2322344444333 8999885 4
Q ss_pred CCCh-hHHHHHH---------HHH-hcCCC--CCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 81 KAGS-PVDQTIA---------ALS-EHMSP--GDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 81 p~~~-~v~~vl~---------~l~-~~l~~--g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
|.+. .+....+ +++ ..+.+ .-|-|..|+++..++.-+...++..|.
T Consensus 91 ~~~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~ 149 (524)
T 3hn7_A 91 KRGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGI 149 (524)
T ss_dssp CTTSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 5433 2333221 232 22222 246666777776666666677777664
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.045 Score=52.36 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=30.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 39 (503)
.+|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus 29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 589999999999999999999997 688998875
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.03 Score=53.54 Aligned_cols=80 Identities=11% Similarity=0.084 Sum_probs=54.8
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|..|| | .+-+|.++|+.|++.|++|.+.||++++.+++.+++.. +..+..=+.+..+
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~---------------------~~~~~~Dv~~~~~ 61 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPN---------------------LFYFHGDVADPLT 61 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTT---------------------EEEEECCTTSHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC---------------------EEEEEecCCCHHH
Confidence 44455 5 68899999999999999999999998887766543210 1111122344456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
++.+++++...+.+=|++|+...
T Consensus 62 v~~~v~~~~~~~g~iDiLVNNAG 84 (247)
T 3ged_A 62 LKKFVEYAMEKLQRIDVLVNNAC 84 (247)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 77777777766655578887654
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.025 Score=55.06 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=31.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
|++|.|+|. |.+|+.++..|++.|++|.+.+|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 38 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 38 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence 468999996 9999999999999999999999973
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.045 Score=51.97 Aligned_cols=99 Identities=10% Similarity=0.087 Sum_probs=57.7
Q ss_pred CCcCCCC-cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 1 MEASALS-RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 1 M~~~~~~-~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
|+.+++. +|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+.... . ...+.... ....++..
T Consensus 1 m~~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------~-~~~~~~~~-~~~~~~~~ 70 (264)
T 2pd6_A 1 MQNRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGG--------P-GSKEGPPR-GNHAAFQA 70 (264)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC----------------------CCEEEEC
T ss_pred CccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh--------c-CccccccC-cceEEEEe
Confidence 5555543 466666 69999999999999999999999999887766543210 0 00000000 00222222
Q ss_pred ecCCChhHHHHHHHHHhcCCCC-CEEEecCCC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPG-DCIIDGGNE 109 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g-~iIId~st~ 109 (503)
=+.+...++++++++.....+= ++||++...
T Consensus 71 D~~~~~~~~~~~~~~~~~~g~i~d~vi~~Ag~ 102 (264)
T 2pd6_A 71 DVSEARAARCLLEQVQACFSRPPSVVVSCAGI 102 (264)
T ss_dssp CTTSHHHHHHHHHHHHHHHSSCCSEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 2334445666666665544443 788887654
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.029 Score=53.39 Aligned_cols=95 Identities=14% Similarity=0.234 Sum_probs=56.4
Q ss_pred CCcCCCCc-EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 1 MEASALSR-IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 1 M~~~~~~~-IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
|+-+...| +-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... +.........++-.
T Consensus 1 M~~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 66 (250)
T 3nyw_A 1 MSLEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIM--------------RSNKHVQEPIVLPL 66 (250)
T ss_dssp ----CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHH--------------HHCTTSCCCEEEEC
T ss_pred CcccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--------------HhccccCcceEEec
Confidence 44333334 44555 5999999999999999999999999988776654321 00000001222222
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
=+.+...++.+++++.....+=+++|++...
T Consensus 67 Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAg~ 97 (250)
T 3nyw_A 67 DITDCTKADTEIKDIHQKYGAVDILVNAAAM 97 (250)
T ss_dssp CTTCHHHHHHHHHHHHHHHCCEEEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3444456677777666555455777776654
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.04 Score=51.83 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=54.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ..++..=+.+...
T Consensus 4 k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 63 (235)
T 3l6e_A 4 GHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG-----------------NA---VIGIVADLAHHED 63 (235)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----------------GG---EEEEECCTTSHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----------------CC---ceEEECCCCCHHH
Confidence 3466666 5899999999999999999999999987766554310 01 1222222334445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++.+.....+=+++|++...
T Consensus 64 v~~~~~~~~~~~g~id~lvnnAg~ 87 (235)
T 3l6e_A 64 VDVAFAAAVEWGGLPELVLHCAGT 87 (235)
T ss_dssp HHHHHHHHHHHHCSCSEEEEECCC
T ss_pred HHHHHHHHHHhcCCCcEEEECCCC
Confidence 666666666554455777776554
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.025 Score=56.76 Aligned_cols=73 Identities=12% Similarity=0.046 Sum_probs=49.3
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHH--HHHHHhhcccCCCCeeeeC---CHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKV--DETLDRAHREGQLPLTGHY---TPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~--~~l~~~~~~~g~~~i~~~~---s~~e~~~~l~~~dvIil~ 79 (503)
.|+|.|.| .|.+|+.++..|++.|++|.+.+|++++. +.+...... .+...+ +.+.+.+.++.+|+||.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v----~~v~~D~l~d~~~l~~~~~~~d~Vi~~ 80 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNV----TLFQGPLLNNVPLMDTLFEGAHLAFIN 80 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTE----EEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCc----EEEECCccCCHHHHHHHHhcCCEEEEc
Confidence 46899998 59999999999999999999999988764 333321100 111122 444444444559999876
Q ss_pred cCC
Q 010702 80 VKA 82 (503)
Q Consensus 80 vp~ 82 (503)
...
T Consensus 81 a~~ 83 (352)
T 1xgk_A 81 TTS 83 (352)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.042 Score=52.83 Aligned_cols=82 Identities=9% Similarity=0.052 Sum_probs=54.5
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHH
Q 010702 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (503)
Q Consensus 9 IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 87 (503)
+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+..=+.+...++
T Consensus 14 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~~v~ 73 (271)
T 3tzq_B 14 AIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVG-----------------RG---AVHHVVDLTNEVSVR 73 (271)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHC-----------------TT---CEEEECCTTCHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC-----------------CC---eEEEECCCCCHHHHH
Confidence 44555 5999999999999999999999999887666554210 00 222222334445667
Q ss_pred HHHHHHHhcCCCCCEEEecCCCC
Q 010702 88 QTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 88 ~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++++.+.....+=+++|++....
T Consensus 74 ~~~~~~~~~~g~id~lv~nAg~~ 96 (271)
T 3tzq_B 74 ALIDFTIDTFGRLDIVDNNAAHS 96 (271)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCCC
Confidence 77776666555557888776543
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.045 Score=55.01 Aligned_cols=97 Identities=13% Similarity=0.176 Sum_probs=57.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhC-CCcEEEE-e-C-ChhHHHHHHHhhcccCCC----------------Ceeee--CC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEK-GFPISVY-N-R-TTSKVDETLDRAHREGQL----------------PLTGH--YT 62 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~-G~~V~v~-d-r-~~~~~~~l~~~~~~~g~~----------------~i~~~--~s 62 (503)
+|+||||+|.|.+|+.+.+.|.++ .++|... | + +.+....+.+.....|.+ .+... .+
T Consensus 16 ~~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~d 95 (354)
T 3cps_A 16 FQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKD 95 (354)
T ss_dssp --CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSC
T ss_pred cceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCC
Confidence 356999999999999999999987 5676655 4 2 333333332211100000 12222 24
Q ss_pred HHHHH---hccCCCcEEEEecCCChhHHHHHHHHHhcCCCCC--EEEecCC
Q 010702 63 PRDFV---LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGD--CIIDGGN 108 (503)
Q Consensus 63 ~~e~~---~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~--iIId~st 108 (503)
++++. .. +|+||.|+|.... .+ ....++..|. +|||.+.
T Consensus 96 p~~i~w~~~~---vDvV~eatg~~~s-~e---~a~~~l~~GakkvVId~pa 139 (354)
T 3cps_A 96 PAEIPWGASG---AQIVCESTGVFTT-EE---KASLHLKGGAKKVIISAPP 139 (354)
T ss_dssp GGGCCHHHHT---CCEEEECSSSCCS-HH---HHGGGGTTTCSEEEESSCC
T ss_pred hHHCCcccCC---CCEEEECCCchhh-HH---HHHHHHHcCCcEEEEeCCC
Confidence 55431 23 8999999998743 22 2334566777 9999876
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.056 Score=55.45 Aligned_cols=114 Identities=14% Similarity=0.141 Sum_probs=75.1
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEE-EEeC----------ChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAE-KGFPIS-VYNR----------TTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~-~G~~V~-v~dr----------~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~ 73 (503)
++|+|.|.|.||...++.|.+ .|.+|. +.|+ +++.+.++.+.... .+..+... -+.+++... +|
T Consensus 210 ~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~-~~~~eil~~--~~ 286 (415)
T 2tmg_A 210 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGER-ITNEELLEL--DV 286 (415)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEE-ECHHHHTTC--SC
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceE-cCchhhhcC--CC
Confidence 579999999999999999999 999877 6676 66776666654211 00001122 245666542 49
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
|+++-|...+....+ -.+.+ .-++|+...|... +.+..+.+.++|+.++.
T Consensus 287 DIliP~A~~n~i~~~----~a~~l-~ak~V~EgAN~p~--t~~a~~~l~~~Gi~~~P 336 (415)
T 2tmg_A 287 DILVPAALEGAIHAG----NAERI-KAKAVVEGANGPT--TPEADEILSRRGILVVP 336 (415)
T ss_dssp SEEEECSSTTSBCHH----HHTTC-CCSEEECCSSSCB--CHHHHHHHHHTTCEEEC
T ss_pred cEEEecCCcCccCcc----cHHHc-CCeEEEeCCCccc--CHHHHHHHHHCCCEEEC
Confidence 999998766432222 22334 5678888888753 45666778899987764
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.037 Score=52.45 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=53.7
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~~ 84 (503)
++-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.++.. + .. .++.++. +.+..
T Consensus 9 ~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~--------------~--~~---~~~~~~~~Dv~~~~ 69 (247)
T 2jah_A 9 VALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELT--------------A--AG---AKVHVLELDVADRQ 69 (247)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------H--TT---CCEEEEECCTTCHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--------------h--cC---CcEEEEECCCCCHH
Confidence 455665 6899999999999999999999999887766543210 0 01 2233222 33444
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++++.....+=+++|++...
T Consensus 70 ~~~~~~~~~~~~~g~id~lv~nAg~ 94 (247)
T 2jah_A 70 GVDAAVASTVEALGGLDILVNNAGI 94 (247)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666666665554445777776543
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.016 Score=58.48 Aligned_cols=96 Identities=11% Similarity=0.095 Sum_probs=55.1
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCC-CcEEEEe-CChhHHHHHHHhhccc-------CCCCeeeeC-CHHHHHhccCCCc
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKG-FPISVYN-RTTSKVDETLDRAHRE-------GQLPLTGHY-TPRDFVLSIQRPR 74 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G-~~V~v~d-r~~~~~~~l~~~~~~~-------g~~~i~~~~-s~~e~~~~l~~~d 74 (503)
++||||+| .|.+|+.+.+.|.++. ++|.... .+...-+.+.+..... +...+...+ +++++ + .+|
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~---~vD 79 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYEDH-K---DVD 79 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGGG-T---TCS
T ss_pred CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHHh-c---CCC
Confidence 46899999 7999999999998764 4666553 2221111111100000 000112221 34443 3 499
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+||+|+|.. ...+....++ ..|..|||.|+.
T Consensus 80 vVf~atp~~-~s~~~a~~~~---~aG~~VId~s~~ 110 (350)
T 2ep5_A 80 VVLSALPNE-LAESIELELV---KNGKIVVSNASP 110 (350)
T ss_dssp EEEECCCHH-HHHHHHHHHH---HTTCEEEECSST
T ss_pred EEEECCChH-HHHHHHHHHH---HCCCEEEECCcc
Confidence 999999975 3344444443 467889999875
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.026 Score=53.76 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=55.3
Q ss_pred CCcCCCCc-EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 1 MEASALSR-IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 1 M~~~~~~~-IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
|+-++..| +-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++
T Consensus 1 M~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~ 61 (252)
T 3h7a_A 1 MSLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA----------------G---GRIVAR 61 (252)
T ss_dssp ----CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT----------------T---CEEEEE
T ss_pred CCcCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CeEEEE
Confidence 44333334 55556 589999999999999999999999998877665432100 1 223333
Q ss_pred e--cCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 79 L--VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 79 ~--vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
. +.+...++.+++.+... .+=+++|++...
T Consensus 62 ~~Dv~~~~~v~~~~~~~~~~-g~id~lv~nAg~ 93 (252)
T 3h7a_A 62 SLDARNEDEVTAFLNAADAH-APLEVTIFNVGA 93 (252)
T ss_dssp ECCTTCHHHHHHHHHHHHHH-SCEEEEEECCCC
T ss_pred ECcCCCHHHHHHHHHHHHhh-CCceEEEECCCc
Confidence 2 34445666777766655 444677776554
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0079 Score=60.47 Aligned_cols=41 Identities=12% Similarity=0.291 Sum_probs=35.5
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHH
Q 010702 5 ALSRIGLAG-LAVMGQNLALNVAEK-GFPISVYNRTTSKVDET 45 (503)
Q Consensus 5 ~~~~IgIIG-lG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l 45 (503)
+||+|.|.| .|.+|+.++..|++. |++|.+.+|++++...+
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~ 65 (372)
T 3slg_A 23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDL 65 (372)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGG
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhh
Confidence 357899998 699999999999998 99999999998765544
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.061 Score=57.59 Aligned_cols=96 Identities=11% Similarity=0.127 Sum_probs=62.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh-hcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~ 82 (503)
.++|-|+|.|.+|..++..|.+.|++|.+.|.++++++.+.+. +.. -+.+..+-++..+ .++++|.+++ .++
T Consensus 127 ~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~----~i~Gd~~~~~~L~~a~i~~a~~vi~-t~~ 201 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFK----VVYGSPTDAHVLAGLRVAAARSIIA-NLS 201 (565)
T ss_dssp CSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSE----EEESCTTCHHHHHHTTGGGCSEEEE-CSC
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCe----EEEeCCCCHHHHHhcCcccCCEEEE-eCC
Confidence 4579999999999999999999999999999999999888765 422 1222233333333 3456899887 444
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGG 107 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~s 107 (503)
+ ...-.+-.....+..-.+|.-..
T Consensus 202 D-~~n~~~~~~ar~~~~~~iiar~~ 225 (565)
T 4gx0_A 202 D-PDNANLCLTVRSLCQTPIIAVVK 225 (565)
T ss_dssp H-HHHHHHHHHHHTTCCCCEEEECS
T ss_pred c-HHHHHHHHHHHHhcCceEEEEEC
Confidence 3 33222222333344445555443
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.036 Score=57.28 Aligned_cols=114 Identities=13% Similarity=0.108 Sum_probs=74.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChhHHHHHHHhhcccCCC-CeeeeCCHHHHHhccCCCc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNR----------TTSKVDETLDRAHREGQL-PLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~~~~~g~~-~i~~~~s~~e~~~~l~~~d 74 (503)
++|+|.|.|++|...|+.|.+.|.+|. +.|+ +.+.+.++.+....-..+ ... ..+.+++... +||
T Consensus 236 ~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~-~i~~~ei~~~--~~D 312 (440)
T 3aog_A 236 ARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAE-PLPAADFWGL--PVE 312 (440)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSE-ECCHHHHTTC--CCS
T ss_pred CEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCce-EcCchhhhcC--CCc
Confidence 579999999999999999999999877 6677 566666665542110000 112 2245665542 499
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+++-|...+....+ -.+.+ .-.+|+...|... +.+..+.+.++|+.|+.
T Consensus 313 IlvPcA~~n~i~~~----na~~l-~ak~VvEgAN~p~--t~eA~~iL~~~GI~~~P 361 (440)
T 3aog_A 313 FLVPAALEKQITEQ----NAWRI-RARIVAEGANGPT--TPAADDILLEKGVLVVP 361 (440)
T ss_dssp EEEECSSSSCBCTT----TGGGC-CCSEEECCSSSCB--CHHHHHHHHHHTCEEEC
T ss_pred EEEecCCcCccchh----hHHHc-CCcEEEecCcccc--CHHHHHHHHHCCCEEEC
Confidence 99998765422111 12233 5678888888753 45666778889988773
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.13 Score=50.45 Aligned_cols=105 Identities=16% Similarity=0.237 Sum_probs=77.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchh
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDP 404 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~ 404 (503)
.+.++.+|.+.|.+.++.+..++|++.+.++. ++|..++.++.+.| ...|++++.....+.+.+.. +
T Consensus 184 ~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~------~ 250 (310)
T 3doj_A 184 VGNGAKMKLIVNMIMGSMMNAFSEGLVLADKS------GLSSDTLLDILDLG-AMTNPMFKGKGPSMNKSSYP------P 250 (310)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TSCHHHHHHHHHHS-TTCCHHHHHHHHHHHTTCCC------C
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-ccccHHHHHHhhhhhcCCCC------C
Confidence 47789999999999999999999999998853 39999999999876 34577766554444332211 1
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 010702 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTY 444 (503)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~~ 444 (503)
.|. +.....+++-++..|-+.|+|+|...++...|...
T Consensus 251 ~f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a 288 (310)
T 3doj_A 251 AFP--LKHQQKDMRLALALGDENAVSMPVAAAANEAFKKA 288 (310)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred Ccc--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 121 12334456888999999999999999988866543
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0089 Score=60.43 Aligned_cols=34 Identities=24% Similarity=0.592 Sum_probs=32.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|||.|||.|..|..+|..|+++|++|++++|++.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 6999999999999999999999999999998754
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.084 Score=52.36 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=46.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--hHHH----HHHHhhcc-cCCCCeeeeCCHHHHHhccC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTT--SKVD----ETLDRAHR-EGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~----~l~~~~~~-~g~~~i~~~~s~~e~~~~l~ 71 (503)
|||.|+|. |.+|+.++..|+..|+ +|.++|+++ ++.+ ++...... .+ .+....+..+++++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~--di~~~~~~~~a~~~-- 80 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLA--GLEATDDPKVAFKD-- 80 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEE--EEEEESCHHHHTTT--
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccC--CeEeccChHHHhCC--
Confidence 58999996 9999999999999996 899999975 2222 12111000 00 23334555665555
Q ss_pred CCcEEEEec
Q 010702 72 RPRSVIILV 80 (503)
Q Consensus 72 ~~dvIil~v 80 (503)
+|+||.+.
T Consensus 81 -~D~Vih~A 88 (327)
T 1y7t_A 81 -ADYALLVG 88 (327)
T ss_dssp -CSEEEECC
T ss_pred -CCEEEECC
Confidence 99999875
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0083 Score=60.79 Aligned_cols=91 Identities=11% Similarity=0.141 Sum_probs=54.3
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCCc---EEEEe-CC-hhHHHHHHHhhcccCCCCeeee-CCHHHHHhccCCCcEEE
Q 010702 5 ALSRIGLAG-LAVMGQNLALNVAEKGFP---ISVYN-RT-TSKVDETLDRAHREGQLPLTGH-YTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 5 ~~~~IgIIG-lG~mG~~lA~~L~~~G~~---V~v~d-r~-~~~~~~l~~~~~~~g~~~i~~~-~s~~e~~~~l~~~dvIi 77 (503)
|++||+||| .|..|.-|.+.|.+++|. +.... ++ ..+.-.+ .+. .+... .+.++ ++.+|+||
T Consensus 1 m~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~--~~~-----~~~~~~~~~~~----~~~~Dvvf 69 (366)
T 3pwk_A 1 MGYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKF--KDQ-----DITIEETTETA----FEGVDIAL 69 (366)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEE--TTE-----EEEEEECCTTT----TTTCSEEE
T ss_pred CCcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCccee--cCC-----CceEeeCCHHH----hcCCCEEE
Confidence 346999999 799999999999998773 33332 21 1110000 000 11111 12222 23499999
Q ss_pred EecCCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+|+|.+ ...+....+. ..|..|||.|+..
T Consensus 70 ~a~~~~-~s~~~a~~~~---~~G~~vIDlSa~~ 98 (366)
T 3pwk_A 70 FSAGSS-TSAKYAPYAV---KAGVVVVDNTSYF 98 (366)
T ss_dssp ECSCHH-HHHHHHHHHH---HTTCEEEECSSTT
T ss_pred ECCChH-hHHHHHHHHH---HCCCEEEEcCCcc
Confidence 999875 4454554443 4688999999864
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.073 Score=51.05 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=59.8
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCC
Q 010702 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (503)
Q Consensus 7 ~~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~ 82 (503)
-|+.|| |.+-+|.++|+.|++.|.+|.+.+|++++.++..++....| .++..+. +.+
T Consensus 9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g-------------------~~~~~~~~Dv~~ 69 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG-------------------YDAHGVAFDVTD 69 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT-------------------CCEEECCCCTTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------------CcEEEEEeeCCC
Confidence 478888 57889999999999999999999999988776654321110 2222222 344
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..+++.+++++.....+=|++|+....
T Consensus 70 ~~~v~~~~~~~~~~~G~iDiLVNNAG~ 96 (255)
T 4g81_D 70 ELAIEAAFSKLDAEGIHVDILINNAGI 96 (255)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHCCCCcEEEECCCC
Confidence 567888888888776666888887543
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.041 Score=53.55 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=36.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 47 (503)
+++-|+| .|-+|+.++..|++.|++|++.+|++++.+++.+
T Consensus 120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~ 161 (287)
T 1lu9_A 120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 161 (287)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 4688999 9999999999999999999999999988776654
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=95.45 E-value=0.067 Score=50.65 Aligned_cols=82 Identities=15% Similarity=0.253 Sum_probs=55.7
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+.+| | .|-+|..+|+.|++.|++|.+.+|+++..+++.+.... . ...+-.=+.+...
T Consensus 10 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~d~~~ 69 (248)
T 3op4_A 10 KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD-----------------N---GKGMALNVTNPES 69 (248)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG-----------------G---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-----------------c---ceEEEEeCCCHHH
Confidence 44444 5 68999999999999999999999998877766543210 1 1122222445456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++.....+=+++|++...
T Consensus 70 v~~~~~~~~~~~g~iD~lv~nAg~ 93 (248)
T 3op4_A 70 IEAVLKAITDEFGGVDILVNNAGI 93 (248)
T ss_dssp HHHHHHHHHHHHCCCSEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 777777776655555788887654
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.029 Score=58.10 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=69.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC---cEEEEe----CC----hh-HHHHHHH---hhcccCCCCe-eeeCCHHHHHhcc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF---PISVYN----RT----TS-KVDETLD---RAHREGQLPL-TGHYTPRDFVLSI 70 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~---~V~v~d----r~----~~-~~~~l~~---~~~~~g~~~i-~~~~s~~e~~~~l 70 (503)
.+|.|+|+|.+|.+++..|.+.|. +|+++| |+ .+ ..+.+.. ..... ... ....++.+++..
T Consensus 187 ~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~--~~~~~~~~~L~e~l~~- 263 (439)
T 2dvm_A 187 ITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKK--TNGENIEGGPQEALKD- 263 (439)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTT--SCTTCCCSSHHHHHTT-
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhc--cccccccccHHHHhcc-
Confidence 579999999999999999999998 799999 87 32 2111211 10000 000 013467777766
Q ss_pred CCCcEEEEecCC--ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 71 QRPRSVIILVKA--GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 71 ~~~dvIil~vp~--~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
+|+||-++|. +..-+ .....+.++.+|+|++|-.+... .+...+.|...+
T Consensus 264 --aDVlInaT~~~~G~~~~----e~v~~m~~~~iVfDLynP~~t~~---~~~A~~~G~~iv 315 (439)
T 2dvm_A 264 --ADVLISFTRPGPGVIKP----QWIEKMNEDAIVFPLANPVPEIL---PEEAKKAGARIV 315 (439)
T ss_dssp --CSEEEECSCCCSSSSCH----HHHTTSCTTCEEEECCSSSCSSC---HHHHHHHTCSEE
T ss_pred --CCEEEEcCCCccCCCCh----HHHHhcCCCCEEEECCCCCCcch---HHHHHHcCCeEE
Confidence 9999999987 42212 23445678889999966543322 233334465554
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.058 Score=51.48 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=56.2
Q ss_pred CCcCCC-CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 1 MEASAL-SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 1 M~~~~~-~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
|...+. +++-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++
T Consensus 1 m~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~ 61 (262)
T 1zem_A 1 MSKKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK----------------G---VEARSY 61 (262)
T ss_dssp --CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------T---SCEEEE
T ss_pred CCcccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEE
Confidence 444343 3455665 689999999999999999999999988766554321100 0 223222
Q ss_pred --ecCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 79 --LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 79 --~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
=+.+...++.+++.+...+.+=+++|++...
T Consensus 62 ~~D~~~~~~~~~~~~~~~~~~g~id~lv~nAg~ 94 (262)
T 1zem_A 62 VCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGY 94 (262)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EecCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 2334455666777666555455788887653
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.093 Score=49.75 Aligned_cols=86 Identities=14% Similarity=0.187 Sum_probs=57.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec--CCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v--p~~~ 84 (503)
.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... +.-. ..+.++..-+ .+..
T Consensus 14 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------~~~~--~~~~~~~~D~~~~~~~ 77 (252)
T 3f1l_A 14 IILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHIN--------------EETG--RQPQWFILDLLTCTSE 77 (252)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------HHHS--CCCEEEECCTTTCCHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------hhcC--CCceEEEEecccCCHH
Confidence 355556 5899999999999999999999999988776654311 1111 0133333333 3445
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++++++.+.....+=+++|++...
T Consensus 78 ~~~~~~~~~~~~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 78 NCQQLAQRIAVNYPRLDGVLHNAGL 102 (252)
T ss_dssp HHHHHHHHHHHHCSCCSEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCcc
Confidence 6777777777666566888887654
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.066 Score=50.96 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=55.5
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCChh
Q 010702 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGSP 85 (503)
Q Consensus 9 IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~~~ 85 (503)
+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+...
T Consensus 9 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~~~~~ 69 (257)
T 3imf_A 9 VIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF----------------P---GQILTVQMDVRNTDD 69 (257)
T ss_dssp EEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCS----------------T---TCEEEEECCTTCHHH
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCCHHH
Confidence 44445 589999999999999999999999998877765432100 0 222222 2344456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++.....+=+++|++...
T Consensus 70 v~~~~~~~~~~~g~id~lv~nAg~ 93 (257)
T 3imf_A 70 IQKMIEQIDEKFGRIDILINNAAG 93 (257)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 777777776655555788887653
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.021 Score=56.33 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=47.0
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIil~vp 81 (503)
+|+|.|.| .|.+|+.++..|++.|++|.+.+|++++.+.+...+. .+.. ..+.+++.+.++.+|+||-+..
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~-----~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEP-----ECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCC-----EEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCe-----EEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 46899998 5999999999999999999999999876543322111 0111 1234444444455888887754
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.049 Score=56.48 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=68.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHH--HHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec--C
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKV--DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--K 81 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~--~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v--p 81 (503)
.++|.|||+|..|.+.|+.|++.|++|+++|...... ..+. .|. ++..-....+.++. +|.||++. |
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~-----~~~~g~~~~~~~~~---~d~vV~s~gi~ 75 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAV-----ERHTGSLNDEWLMA---ADLIVASPGIA 75 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTS-----CEEESSCCHHHHHT---CSEEEECTTSC
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCC-----EEEECCCcHHHhcc---CCEEEeCCCCC
Confidence 3689999999999999999999999999999765321 1222 221 22212222444444 89888863 3
Q ss_pred CC-hhHHHHH----------HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 82 AG-SPVDQTI----------AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 82 ~~-~~v~~vl----------~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
.. ..+.... +-+...++...|-|..||+.-.++.-+...++..|..
T Consensus 76 ~~~p~~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~ 132 (439)
T 2x5o_A 76 LAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVN 132 (439)
T ss_dssp TTCHHHHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence 22 2222211 1122223434566667777766666667777777654
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.041 Score=52.79 Aligned_cols=83 Identities=10% Similarity=0.114 Sum_probs=59.3
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCC
Q 010702 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (503)
Q Consensus 7 ~~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~ 82 (503)
-|+.+| |.+-+|.++|+.|++.|.+|.++||++++++++.++.... . .+++.+. |.+
T Consensus 7 gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~----------------g---~~~~~~~~Dvt~ 67 (254)
T 4fn4_A 7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGM----------------G---KEVLGVKADVSK 67 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCC
Confidence 367777 4688999999999999999999999999887766542111 0 2333322 455
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
..+++.+++++.....+=|++|+...
T Consensus 68 ~~~v~~~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 68 KKDVEEFVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 56778888877776666688888654
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.059 Score=51.37 Aligned_cols=84 Identities=15% Similarity=0.264 Sum_probs=53.8
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~~ 84 (503)
+|-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+.. .+.. . .++.++. +.+..
T Consensus 9 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l--------------~~~~-~---~~~~~~~~D~~~~~ 70 (263)
T 3ai3_A 9 VAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSL--------------KEKF-G---VRVLEVAVDVATPE 70 (263)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--------------HHHH-C---CCEEEEECCTTSHH
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH--------------HHhc-C---CceEEEEcCCCCHH
Confidence 455666 599999999999999999999999988766554321 0000 1 2233222 33444
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++++++++.....+=+++|++...
T Consensus 71 ~~~~~~~~~~~~~g~id~lv~~Ag~ 95 (263)
T 3ai3_A 71 GVDAVVESVRSSFGGADILVNNAGT 95 (263)
T ss_dssp HHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666666665554445778877653
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.04 Score=52.66 Aligned_cols=83 Identities=8% Similarity=0.079 Sum_probs=55.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~~ 84 (503)
+|-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+..
T Consensus 31 ~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~~ 91 (262)
T 3rkr_A 31 VAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA----------------G---GEAESHACDLSHSD 91 (262)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CEEEEEECCTTCHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh----------------C---CceeEEEecCCCHH
Confidence 455556 699999999999999999999999998877665432100 0 222222 234445
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++++.....+=++||++...
T Consensus 92 ~v~~~~~~~~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 92 AIAAFATGVLAAHGRCDVLVNNAGV 116 (262)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCc
Confidence 5666776666555555778877654
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.039 Score=54.89 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=31.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
|+|.|+|. |.+|+.++..|++.|++|.+.+|++
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 58999997 9999999999999999999999976
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.038 Score=53.37 Aligned_cols=86 Identities=9% Similarity=0.130 Sum_probs=56.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~~ 84 (503)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.++..+.....+ .. ..++.++. +.+..
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------------~~--~~~~~~~~~Dv~~~~ 76 (281)
T 3svt_A 13 TYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALG--------------AN--GGAIRYEPTDITNED 76 (281)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC--------------CS--SCEEEEEECCTTSHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--------------CC--CceEEEEeCCCCCHH
Confidence 355555 6999999999999999999999999988776654321100 00 01233322 34445
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++++.....+=+++|++...
T Consensus 77 ~v~~~~~~~~~~~g~id~lv~nAg~ 101 (281)
T 3svt_A 77 ETARAVDAVTAWHGRLHGVVHCAGG 101 (281)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 6677777776655555788887654
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.077 Score=49.72 Aligned_cols=91 Identities=9% Similarity=0.159 Sum_probs=57.5
Q ss_pred CCcCCCCc-EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 1 MEASALSR-IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 1 M~~~~~~~-IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
|+-++..+ |-|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.+.. .+.. . .++.++
T Consensus 1 m~~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------~~~~-~---~~~~~~ 62 (248)
T 2pnf_A 1 MEIKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEI--------------ANKY-G---VKAHGV 62 (248)
T ss_dssp CCCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--------------HHHH-C---CCEEEE
T ss_pred CccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHH--------------Hhhc-C---CceEEE
Confidence 54333334 55555 699999999999999999999999988766554321 0000 1 223222
Q ss_pred e--cCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 79 L--VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 79 ~--vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
. +.+...++..++++...+.+=++||++...
T Consensus 63 ~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag~ 95 (248)
T 2pnf_A 63 EMNLLSEESINKAFEEIYNLVDGIDILVNNAGI 95 (248)
T ss_dssp ECCTTCHHHHHHHHHHHHHHSSCCSEEEECCCC
T ss_pred EccCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 2 334445666777776655555788887654
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.07 Score=50.47 Aligned_cols=87 Identities=13% Similarity=0.189 Sum_probs=53.1
Q ss_pred CCcCCCCc-EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEE
Q 010702 1 MEASALSR-IGLAG-LAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 1 M~~~~~~~-IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIi 77 (503)
|...+..| |-|.| .|.+|..+|+.|++.|++|.+.+|++ ++.++..+.. . .++.+
T Consensus 1 M~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------------------~---~~~~~ 58 (249)
T 2ew8_A 1 MTQRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNL-------------------G---RRVLT 58 (249)
T ss_dssp --CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHT-------------------T---CCEEE
T ss_pred CCCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhc-------------------C---CcEEE
Confidence 44444334 55555 69999999999999999999999998 6554321110 0 12222
Q ss_pred E--ecCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 78 I--LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 78 l--~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+ =+.+...++.+++.+...+.+=+++|++...
T Consensus 59 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 92 (249)
T 2ew8_A 59 VKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGI 92 (249)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EEeecCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2 2334445666666666555455778877654
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.046 Score=52.02 Aligned_cols=82 Identities=10% Similarity=0.064 Sum_probs=50.8
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHH
Q 010702 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (503)
Q Consensus 9 IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 87 (503)
+-|.| .|-+|..+|+.|++.|++|.+.+|+++..++..+. +-.. ..++..=+.+...++
T Consensus 10 ~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-----------------~~~~---~~~~~~Dv~~~~~v~ 69 (257)
T 3tpc_A 10 FIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAE-----------------LGAA---VRFRNADVTNEADAT 69 (257)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC--------------------------------CEEEECCTTCHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH-----------------hCCc---eEEEEccCCCHHHHH
Confidence 44555 58999999999999999999999998765544321 0011 233333344555677
Q ss_pred HHHHHHHhcCCCCCEEEecCCCC
Q 010702 88 QTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 88 ~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.+++.+.....+=+++|++....
T Consensus 70 ~~~~~~~~~~g~id~lv~nAg~~ 92 (257)
T 3tpc_A 70 AALAFAKQEFGHVHGLVNCAGTA 92 (257)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCCC
Confidence 77777766555557888876543
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.069 Score=49.75 Aligned_cols=81 Identities=12% Similarity=0.210 Sum_probs=52.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+... . ..++..=+.+...
T Consensus 6 k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~------------------~---~~~~~~D~~~~~~ 64 (234)
T 2ehd_A 6 GAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELE------------------G---ALPLPGDVREEGD 64 (234)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST------------------T---CEEEECCTTCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh------------------h---ceEEEecCCCHHH
Confidence 4577776 6999999999999999999999999887665543210 1 2222222333345
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
++++++.+...+.+=+++|++..
T Consensus 65 ~~~~~~~~~~~~~~id~li~~Ag 87 (234)
T 2ehd_A 65 WARAVAAMEEAFGELSALVNNAG 87 (234)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 56666655544434467777654
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0073 Score=60.56 Aligned_cols=90 Identities=9% Similarity=0.066 Sum_probs=54.5
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCC---CcEEEEe-CC-hhHHHHHHHhhcccCCCCeeeeC-CHHHHHhccCCCcEEEE
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKG---FPISVYN-RT-TSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVII 78 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G---~~V~v~d-r~-~~~~~~l~~~~~~~g~~~i~~~~-s~~e~~~~l~~~dvIil 78 (503)
|+||+|+| .|.+|+.+.+.|.+++ +++..++ ++ ..+.-.+. +. .+...+ +++. ... +|+||+
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~--~~-----~i~~~~~~~~~-~~~---vDvVf~ 71 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFN--GK-----TVRVQNVEEFD-WSQ---VHIALF 71 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEET--TE-----EEEEEEGGGCC-GGG---CSEEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeec--Cc-----eeEEecCChHH-hcC---CCEEEE
Confidence 46999999 9999999999999884 3555554 32 21100000 00 122211 2222 233 899999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
|+|.. ...+....+ +..|..+||.|+..
T Consensus 72 a~g~~-~s~~~a~~~---~~~G~~vId~s~~~ 99 (336)
T 2r00_A 72 SAGGE-LSAKWAPIA---AEAGVVVIDNTSHF 99 (336)
T ss_dssp CSCHH-HHHHHHHHH---HHTTCEEEECSSTT
T ss_pred CCCch-HHHHHHHHH---HHcCCEEEEcCCcc
Confidence 99875 344444444 34688999998764
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.015 Score=58.70 Aligned_cols=94 Identities=7% Similarity=0.142 Sum_probs=56.2
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCC-cEE-EEeCCh--hHHHHHHHh--------hcccCCCCeeeeCCHHHHHhccCC
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGF-PIS-VYNRTT--SKVDETLDR--------AHREGQLPLTGHYTPRDFVLSIQR 72 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~-~V~-v~dr~~--~~~~~l~~~--------~~~~g~~~i~~~~s~~e~~~~l~~ 72 (503)
++|||||| .|..|.-|.+.|.++-+ ++. +..++. .++...... +... +.+.. .+.+++ + .
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~--~~v~~-~~~~~~-~---~ 79 (359)
T 4dpl_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIAD--MEIKP-TDPKLM-D---D 79 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHT--CBCEE-CCGGGC-T---T
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhccccccccccccccc--ceEEe-CCHHHh-c---C
Confidence 35899999 69999999998877653 454 334433 122221000 0000 01211 233332 3 4
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 73 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+|+||+|+|.+ ...+....+. ..|..|||.|+..
T Consensus 80 vDvvf~a~p~~-~s~~~a~~~~---~~G~~vIDlSa~~ 113 (359)
T 4dpl_A 80 VDIIFSPLPQG-AAGPVEEQFA---KEGFPVISNSPDH 113 (359)
T ss_dssp CCEEEECCCTT-THHHHHHHHH---HTTCEEEECSSTT
T ss_pred CCEEEECCChH-HHHHHHHHHH---HCCCEEEEcCCCc
Confidence 99999999997 4455555543 4689999999864
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.015 Score=58.70 Aligned_cols=94 Identities=7% Similarity=0.142 Sum_probs=56.2
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCC-cEE-EEeCCh--hHHHHHHHh--------hcccCCCCeeeeCCHHHHHhccCC
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGF-PIS-VYNRTT--SKVDETLDR--------AHREGQLPLTGHYTPRDFVLSIQR 72 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~-~V~-v~dr~~--~~~~~l~~~--------~~~~g~~~i~~~~s~~e~~~~l~~ 72 (503)
++|||||| .|..|.-|.+.|.++-+ ++. +..++. .++...... +... +.+.. .+.+++ + .
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~--~~v~~-~~~~~~-~---~ 79 (359)
T 4dpk_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIAD--MEIKP-TDPKLM-D---D 79 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHT--CBCEE-CCGGGC-T---T
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhccccccccccccccc--ceEEe-CCHHHh-c---C
Confidence 35899999 69999999998877653 454 334433 122221000 0000 01211 233332 3 4
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 73 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+|+||+|+|.+ ...+....+. ..|..|||.|+..
T Consensus 80 vDvvf~a~p~~-~s~~~a~~~~---~~G~~vIDlSa~~ 113 (359)
T 4dpk_A 80 VDIIFSPLPQG-AAGPVEEQFA---KEGFPVISNSPDH 113 (359)
T ss_dssp CCEEEECCCTT-THHHHHHHHH---HTTCEEEECSSTT
T ss_pred CCEEEECCChH-HHHHHHHHHH---HCCCEEEEcCCCc
Confidence 99999999997 4455555543 4689999999864
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.14 Score=50.08 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=35.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 46 (503)
++|.|.|. |.+|+.++..|++.|++|.+.+|++++.+.+.
T Consensus 12 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~ 52 (342)
T 1y1p_A 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ 52 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHH
Confidence 57999986 99999999999999999999999988765544
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.055 Score=54.16 Aligned_cols=100 Identities=9% Similarity=0.106 Sum_probs=56.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHh---C-CCcEEE-EeC-ChhHHHHHHHhhcccCCC----------------Ceeee--C
Q 010702 6 LSRIGLAGLAVMGQNLALNVAE---K-GFPISV-YNR-TTSKVDETLDRAHREGQL----------------PLTGH--Y 61 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~---~-G~~V~v-~dr-~~~~~~~l~~~~~~~g~~----------------~i~~~--~ 61 (503)
+.||||+|.|.+|+.+.+.|.+ + .++|.. .++ +++....+.+.....|.+ .+... .
T Consensus 2 ~ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~ 81 (339)
T 2x5j_O 2 TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHER 81 (339)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred CeEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEecC
Confidence 3589999999999999999988 4 456654 454 555555555311100000 12222 2
Q ss_pred CHHHHH-hccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 62 TPRDFV-LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 62 s~~e~~-~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
+++++. .+ ..+|+||.|+|.... .+.....+.. ....+|||.+.
T Consensus 82 dp~~l~~~~-~~vDvV~e~tg~~~s-~e~a~~~l~~-GakkVVId~~a 126 (339)
T 2x5j_O 82 SLQSLPWRE-LGVDVVLDCTGVYGS-REHGEAHIAA-GAKKVLFSHPG 126 (339)
T ss_dssp SGGGCCHHH-HTCSEEEECSSSCCS-HHHHHHHHHT-TCSEEEESSCC
T ss_pred ChHHCcccc-cCCCEEEECCCcccc-HHHHHHHHHc-CCCEEEEeccc
Confidence 444421 10 028999999998644 3333333332 12236888776
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.059 Score=51.79 Aligned_cols=83 Identities=13% Similarity=0.158 Sum_probs=55.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~~ 84 (503)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+..
T Consensus 6 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dv~d~~ 66 (264)
T 3tfo_A 6 VILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA----------------G---GTALAQVLDVTDRH 66 (264)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT----------------T---CEEEEEECCTTCHH
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEcCCCCHH
Confidence 355556 589999999999999999999999998877665432100 0 223322 234445
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++.+.....+=+++|++...
T Consensus 67 ~v~~~~~~~~~~~g~iD~lVnnAG~ 91 (264)
T 3tfo_A 67 SVAAFAQAAVDTWGRIDVLVNNAGV 91 (264)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 6677777666655555778877543
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.072 Score=53.94 Aligned_cols=92 Identities=14% Similarity=0.210 Sum_probs=54.4
Q ss_pred CCcEEEEc-ccHHHHHHHH-HHHhCCCc---EEEEeC-ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAG-LAVMGQNLAL-NVAEKGFP---ISVYNR-TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~-~L~~~G~~---V~v~dr-~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|+||||+| .|.+|+.+.+ .|.++++. +..+.. +..+ .+....... +.+....+++++ +. +|+||.|
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~--~v~~~~g~~--i~~~~~~~~~~~-~~---~DvVf~a 72 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ--AAPSFGGTT--GTLQDAFDLEAL-KA---LDIIVTC 72 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS--BCCGGGTCC--CBCEETTCHHHH-HT---CSEEEEC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCC--CccccCCCc--eEEEecCChHHh-cC---CCEEEEC
Confidence 36899999 8999999999 56666653 344433 2221 110000000 122223345554 44 9999999
Q ss_pred cCCChhHHHHHHHHHhcCCCCC--EEEecCCC
Q 010702 80 VKAGSPVDQTIAALSEHMSPGD--CIIDGGNE 109 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~--iIId~st~ 109 (503)
+|.. ...+....+.+ .|. +|||.|+.
T Consensus 73 ~g~~-~s~~~a~~~~~---~G~k~vVID~ss~ 100 (367)
T 1t4b_A 73 QGGD-YTNEIYPKLRE---SGWQGYWIDAASS 100 (367)
T ss_dssp SCHH-HHHHHHHHHHH---TTCCCEEEECSST
T ss_pred CCch-hHHHHHHHHHH---CCCCEEEEcCChh
Confidence 9974 44555555543 454 99999876
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.078 Score=53.73 Aligned_cols=41 Identities=15% Similarity=0.256 Sum_probs=30.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC---CcEEE-EeC-ChhHHHHHH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG---FPISV-YNR-TTSKVDETL 46 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G---~~V~v-~dr-~~~~~~~l~ 46 (503)
++||||+|.|.+|+.+.+.|.+++ ++|.. .|+ +++....+.
T Consensus 2 ~ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll 47 (380)
T 2d2i_A 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLL 47 (380)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHH
T ss_pred CcEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhh
Confidence 358999999999999999998863 56554 454 555554554
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.041 Score=56.61 Aligned_cols=114 Identities=9% Similarity=0.088 Sum_probs=66.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeCCh---------------hHHHHHHHhhcccCCC-CeeeeCCHHHHHhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNRTT---------------SKVDETLDRAHREGQL-PLTGHYTPRDFVLS 69 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~-v~dr~~---------------~~~~~l~~~~~~~g~~-~i~~~~s~~e~~~~ 69 (503)
++|.|.|.|++|...|+.|.+.|.+|. +.|.++ +.+.++.+....-..+ ..+. -+.+++...
T Consensus 213 ~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~-i~~~~~~~~ 291 (421)
T 2yfq_A 213 AKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAER-ITDEEFWTK 291 (421)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------------
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceE-eCccchhcC
Confidence 589999999999999999999999987 678883 4455544432100000 0011 122333321
Q ss_pred cCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 70 IQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 70 l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+||+++-|.+.+....+. .+.+ ...+|+...|... +.+..+.+.++|+.|+.
T Consensus 292 --~~DIliP~A~~n~i~~~~----A~~l-~ak~VvEgAN~P~--t~ea~~il~~~GI~~~P 343 (421)
T 2yfq_A 292 --EYDIIVPAALENVITGER----AKTI-NAKLVCEAANGPT--TPEGDKVLTERGINLTP 343 (421)
T ss_dssp -----CEEECSCSSCSCHHH----HTTC-CCSEEECCSSSCS--CHHHHHHHHHHTCEEEC
T ss_pred --CccEEEEcCCcCcCCccc----HHHc-CCeEEEeCCcccc--CHHHHHHHHHCCCEEEC
Confidence 389999887665322222 2334 5788888888753 45666778888988763
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.038 Score=53.56 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=48.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCC-CcEEEEeCChhHH--HHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKG-FPISVYNRTTSKV--DETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G-~~V~v~dr~~~~~--~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIil~ 79 (503)
+++|.|.|. |.+|+.++..|++.| ++|.+.+|++++. +.+...+.. +.. ..+++.+.+.++.+|+||.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~-----~~~~D~~d~~~l~~~~~~~d~vi~~ 79 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAE-----VVQGDQDDQVIMELALNGAYATFIV 79 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCE-----EEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCE-----EEEecCCCHHHHHHHHhcCCEEEEe
Confidence 368999987 999999999999998 9999999998754 223222211 111 12444444444558888887
Q ss_pred cC
Q 010702 80 VK 81 (503)
Q Consensus 80 vp 81 (503)
..
T Consensus 80 a~ 81 (299)
T 2wm3_A 80 TN 81 (299)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.08 Score=52.95 Aligned_cols=41 Identities=15% Similarity=0.256 Sum_probs=30.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC---CcEEE-EeC-ChhHHHHHH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG---FPISV-YNR-TTSKVDETL 46 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G---~~V~v-~dr-~~~~~~~l~ 46 (503)
+.||||+|.|.+|+.+.+.|.+++ ++|.. .|+ +++....+.
T Consensus 2 ~ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~ 47 (339)
T 3b1j_A 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLL 47 (339)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHh
Confidence 358999999999999999998873 56554 455 555555554
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.067 Score=49.86 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=34.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 47 (503)
++|-|.| .|-+|..+|+.|+++|++|.+.+|++++.+++.+
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTN 43 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3577776 5899999999999999999999999988777654
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.046 Score=51.17 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=47.6
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeeee--CCHHHHHhccCCCcEEEEe
Q 010702 5 ALSRIGLAG-LAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 5 ~~~~IgIIG-lG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~--~s~~e~~~~l~~~dvIil~ 79 (503)
++++|.|.| .|.+|+.+++.|++. |++|.+.+|++++.+.+. ... .+... .+.+++.+.++.+|+||.+
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~-~~~-----~~~~~D~~d~~~~~~~~~~~d~vi~~ 76 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG-GEA-----DVFIGDITDADSINPAFQGIDALVIL 76 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT-CCT-----TEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcC-CCe-----eEEEecCCCHHHHHHHHcCCCEEEEe
Confidence 346899998 599999999999999 899999999987765441 110 11111 2333333333447888877
Q ss_pred cC
Q 010702 80 VK 81 (503)
Q Consensus 80 vp 81 (503)
..
T Consensus 77 a~ 78 (253)
T 1xq6_A 77 TS 78 (253)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.025 Score=59.16 Aligned_cols=106 Identities=17% Similarity=0.142 Sum_probs=71.6
Q ss_pred CcEEEEccc----HHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGLA----VMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG----~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.+|+|||++ .+|..+.++|.+.| +.|+..|.....+ . ++..+.|++|+.+. +|++++++|
T Consensus 9 ~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i---------~---G~~~y~sl~~lp~~---~Dlavi~vp 73 (457)
T 2csu_A 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV---------Q---GVKAYKSVKDIPDE---IDLAIIVVP 73 (457)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE---------T---TEECBSSTTSCSSC---CSEEEECSC
T ss_pred CeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeE---------C---CEeccCCHHHcCCC---CCEEEEecC
Confidence 469999998 89999999999986 5565555442211 1 35678888887665 899999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChh--h-----HHHHHHHHHhcCccEec
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYL--N-----TERRIHEASQKGLLYLG 130 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~--~-----t~~~~~~l~~~gi~~i~ 130 (503)
.. .+.++++++...- -..+|+ .+...+. + .+++.+.+++.|+++++
T Consensus 74 ~~-~~~~~v~e~~~~G-i~~vv~-~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viG 126 (457)
T 2csu_A 74 KR-FVKDTLIQCGEKG-VKGVVI-ITAGFGETGEEGKREEKELVEIAHKYGMRIIG 126 (457)
T ss_dssp HH-HHHHHHHHHHHHT-CCEEEE-CCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred HH-HHHHHHHHHHHcC-CCEEEE-ecCCCCccccccHHHHHHHHHHHHHcCCEEEc
Confidence 84 6777887776542 223333 3433321 1 44556666777888775
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.071 Score=54.73 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=74.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChhHHHHHHHhhcccCCCCeee-eCCHHHHHhccCCCc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPIS-VYNR----------TTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPR 74 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~~~~l~~~d 74 (503)
++|.|.|.|.+|...|+.|.+.|.+|. +.|+ +.+.+.++.+... .+.. .-+.+++... +||
T Consensus 219 k~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g-----~v~~~~~~~~e~~~~--~~D 291 (419)
T 3aoe_E 219 ARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATG-----SLPRLDLAPEEVFGL--EAE 291 (419)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHS-----SCSCCCBCTTTGGGS--SCS
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhC-----Ccceeeccchhhhcc--Cce
Confidence 579999999999999999999999987 7888 7777777665421 1110 1122344331 499
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+++-|........ +-.+.+ .=++|+...|... |.+..+.+.++|+.|+.
T Consensus 292 VliP~A~~n~i~~----~~A~~l-~ak~V~EgAN~p~--t~~A~~~L~~~Gi~~~P 340 (419)
T 3aoe_E 292 VLVLAAREGALDG----DRARQV-QAQAVVEVANFGL--NPEAEAYLLGKGALVVP 340 (419)
T ss_dssp EEEECSCTTCBCH----HHHTTC-CCSEEEECSTTCB--CHHHHHHHHHHTCEEEC
T ss_pred EEEeccccccccc----chHhhC-CceEEEECCCCcC--CHHHHHHHHHCCCEEEC
Confidence 9998876543222 222334 3478988888753 45666788999998873
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.077 Score=51.14 Aligned_cols=82 Identities=18% Similarity=0.253 Sum_probs=55.9
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+.+| | .|-+|..+|+.|++.|++|.+.+|+.++.+++.+... .. ..++..=+.+...
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~d~~~ 88 (272)
T 4dyv_A 29 KIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG-----------------DD---ALCVPTDVTDPDS 88 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT-----------------SC---CEEEECCTTSHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----------------CC---eEEEEecCCCHHH
Confidence 55555 5 6899999999999999999999999887766654310 11 2233333444456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++.....+=+++|++...
T Consensus 89 v~~~~~~~~~~~g~iD~lVnnAg~ 112 (272)
T 4dyv_A 89 VRALFTATVEKFGRVDVLFNNAGT 112 (272)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 777777766655555788877654
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.096 Score=49.80 Aligned_cols=83 Identities=10% Similarity=0.181 Sum_probs=54.6
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~~ 84 (503)
+|-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+... + .. .++.++. +.+..
T Consensus 11 ~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------~--~~---~~~~~~~~D~~~~~ 71 (260)
T 2ae2_A 11 TALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWR--------------S--KG---FKVEASVCDLSSRS 71 (260)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------H--TT---CEEEEEECCTTCHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------h--cC---CcEEEEEcCCCCHH
Confidence 466666 6899999999999999999999999887665543210 0 01 2332222 33444
Q ss_pred hHHHHHHHHHhcC-CCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHM-SPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l-~~g~iIId~st~ 109 (503)
.++.+++.+.... .+=+++|++...
T Consensus 72 ~~~~~~~~~~~~~~g~id~lv~~Ag~ 97 (260)
T 2ae2_A 72 ERQELMNTVANHFHGKLNILVNNAGI 97 (260)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCCEEEECCCC
Confidence 5677777766655 455788887654
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.079 Score=51.72 Aligned_cols=83 Identities=13% Similarity=0.193 Sum_probs=51.6
Q ss_pred cEE-EEc-ccHHHHHHHHHHHhCCCcEEEEeCC------------hhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCC
Q 010702 8 RIG-LAG-LAVMGQNLALNVAEKGFPISVYNRT------------TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 8 ~Ig-IIG-lG~mG~~lA~~L~~~G~~V~v~dr~------------~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~ 73 (503)
|+. |.| .|-+|..+|+.|++.|++|.+.+|+ ++..++..+.. ... ..
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~--~~ 89 (299)
T 3t7c_A 29 KVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQV-----------------EAL--GR 89 (299)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHH-----------------HHT--TC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHH-----------------Hhc--CC
Confidence 444 445 5899999999999999999999987 33333332211 010 12
Q ss_pred cEEEEe--cCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 74 RSVIIL--VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 74 dvIil~--vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.++. +.+...++.+++++...+.+=+++|++...
T Consensus 90 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 127 (299)
T 3t7c_A 90 RIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAAL 127 (299)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 333333 344456777777766655555778876553
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.017 Score=58.80 Aligned_cols=82 Identities=11% Similarity=0.120 Sum_probs=60.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC---cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
.||.|||. |+.|.+-+..+...|. +|+++|+++.. .+. . .+++. . +|+||-|+.-
T Consensus 215 ~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~------~g~-----~------~~~i~-~---aDivIn~vli 273 (394)
T 2qrj_A 215 PTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETS------RGG-----P------FDEIP-Q---ADIFINCIYL 273 (394)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHT------TCS-----C------CTHHH-H---SSEEEECCCC
T ss_pred CeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccc------cCC-----c------hhhHh-h---CCEEEECcCc
Confidence 58999999 9999999999999998 99999988631 121 1 13443 4 9999999986
Q ss_pred ChhHHHHH-HHHHhcC-CCCCEEEecCCC
Q 010702 83 GSPVDQTI-AALSEHM-SPGDCIIDGGNE 109 (503)
Q Consensus 83 ~~~v~~vl-~~l~~~l-~~g~iIId~st~ 109 (503)
+.....++ ++.+..+ ++|.+|||.+.-
T Consensus 274 g~~aP~Lvt~e~v~~m~k~gsVIVDVA~D 302 (394)
T 2qrj_A 274 SKPIAPFTNMEKLNNPNRRLRTVVDVSAD 302 (394)
T ss_dssp CSSCCCSCCHHHHCCTTCCCCEEEETTCC
T ss_pred CCCCCcccCHHHHhcCcCCCeEEEEEecC
Confidence 43222233 5666778 899999999753
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.099 Score=49.13 Aligned_cols=83 Identities=10% Similarity=0.093 Sum_probs=57.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~~ 84 (503)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+..
T Consensus 7 ~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~~ 67 (247)
T 3lyl_A 7 VALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK----------------G---FKARGLVLNISDIE 67 (247)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CceEEEEecCCCHH
Confidence 455556 599999999999999999999999998877665432100 1 223222 234445
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++++.....+=+++|++...
T Consensus 68 ~~~~~~~~~~~~~~~id~li~~Ag~ 92 (247)
T 3lyl_A 68 SIQNFFAEIKAENLAIDILVNNAGI 92 (247)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 6777777777666556888887654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.085 Score=50.19 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=53.6
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+..=+.+...+
T Consensus 10 ~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~~v 69 (255)
T 4eso_A 10 KAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG-----------------PR---VHALRSDIADLNEI 69 (255)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----------------GG---EEEEECCTTCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---ceEEEccCCCHHHH
Confidence 455556 5899999999999999999999999988776654310 00 11222223444456
Q ss_pred HHHHHHHHhcCCCCCEEEecCCC
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.+++.+.....+=+++|++...
T Consensus 70 ~~~~~~~~~~~g~id~lv~nAg~ 92 (255)
T 4eso_A 70 AVLGAAAGQTLGAIDLLHINAGV 92 (255)
T ss_dssp HHHHHHHHHHHSSEEEEEECCCC
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 66666665555444677776543
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.031 Score=59.86 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=69.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~~~ 84 (503)
++|.|+|+|.+|..+|+.|.+.|++|.+.|.++++++++. . -+....+-+++.+ .++++|.++.+++++
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~-~-------~i~gD~t~~~~L~~agi~~ad~vi~~~~~d- 419 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDH-V-------VVYGDATVGQTLRQAGIDRASGIIVTTNDD- 419 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSS-C-------EEESCSSSSTHHHHHTTTSCSEEEECCSCH-
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcC-C-------EEEeCCCCHHHHHhcCccccCEEEEECCCc-
Confidence 5799999999999999999999999999999998765542 1 1222223333332 456799999998875
Q ss_pred hHHHHHHHHHhcCCCC-CEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 85 PVDQTIAALSEHMSPG-DCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g-~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
...-.+-.++..+.+. .+|.-..+... .+.+...|+..+-.
T Consensus 420 ~~ni~~~~~ak~l~~~~~iiar~~~~~~------~~~l~~~G~d~vi~ 461 (565)
T 4gx0_A 420 STNIFLTLACRHLHSHIRIVARANGEEN------VDQLYAAGADFVVS 461 (565)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEEESSTTS------HHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHHHHCCCCEEEEEECCHHH------HHHHHHcCCCEEEc
Confidence 3332333344445555 55555544322 22234456655533
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.073 Score=50.26 Aligned_cols=83 Identities=11% Similarity=0.077 Sum_probs=56.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~~ 84 (503)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... .. .++.++. +.+..
T Consensus 11 ~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~~~D~~~~~ 71 (253)
T 3qiv_A 11 VGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVA----------------DG---GTAISVAVDVSDPE 71 (253)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----------------TT---CEEEEEECCTTSHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh----------------cC---CcEEEEEccCCCHH
Confidence 455666 59999999999999999999999999887766543210 01 2233332 34445
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++.+.....+=+++|++...
T Consensus 72 ~~~~~~~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 72 SAKAMADRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 6677777776655556788887654
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.11 Score=50.02 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=54.8
Q ss_pred CcEEEEcc-cH--HHHHHHHHHHhCCCcEEEEeCCh--hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGL-AV--MGQNLALNVAEKGFPISVYNRTT--SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGl-G~--mG~~lA~~L~~~G~~V~v~dr~~--~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
++|-|.|. |. +|..+|+.|++.|++|.+.+|+. +..+++.+.. ....++..=+.
T Consensus 27 k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~---------------------~~~~~~~~Dl~ 85 (280)
T 3nrc_A 27 KKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEF---------------------NPAAVLPCDVI 85 (280)
T ss_dssp CEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGG---------------------CCSEEEECCTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhc---------------------CCceEEEeecC
Confidence 34666675 56 99999999999999999999987 4444333221 01223333344
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+...++.+++++.....+=+++|++....
T Consensus 86 ~~~~v~~~~~~~~~~~g~id~li~nAg~~ 114 (280)
T 3nrc_A 86 SDQEIKDLFVELGKVWDGLDAIVHSIAFA 114 (280)
T ss_dssp CHHHHHHHHHHHHHHCSSCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 55567777777776665667888876653
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.1 Score=50.33 Aligned_cols=83 Identities=17% Similarity=0.258 Sum_probs=54.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~~ 84 (503)
+|-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+... + .. .++.++ =+.+..
T Consensus 24 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~--------------~--~~---~~~~~~~~Dv~~~~ 84 (277)
T 2rhc_B 24 VALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELR--------------E--AG---VEADGRTCDVRSVP 84 (277)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------H--TT---CCEEEEECCTTCHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------h--cC---CceEEEECCCCCHH
Confidence 455555 6999999999999999999999999887665543210 0 00 222222 233444
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++++...+.+=++||++...
T Consensus 85 ~v~~~~~~~~~~~g~iD~lv~~Ag~ 109 (277)
T 2rhc_B 85 EIEALVAAVVERYGPVDVLVNNAGR 109 (277)
T ss_dssp HHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 5666677666655555788877653
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.055 Score=54.03 Aligned_cols=94 Identities=11% Similarity=0.044 Sum_probs=58.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeee--CCHHHHHhcc---CCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGH--YTPRDFVLSI---QRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~--~s~~e~~~~l---~~~dvIil~v 80 (503)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.+... +.-. .+..+.+.++ ...|+||-++
T Consensus 169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~----~~~~~~~~~~~~v~~~~~g~g~D~vid~~ 244 (348)
T 2d8a_A 169 KSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADY----VINPFEEDVVKEVMDITDGNGVDVFLEFS 244 (348)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSE----EECTTTSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE----EECCCCcCHHHHHHHHcCCCCCCEEEECC
Confidence 479999999999999999999999 9999999998887766554321 1101 1222222211 1367777777
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
..... +....+.+.++-.++..+.
T Consensus 245 g~~~~----~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 245 GAPKA----LEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp CCHHH----HHHHHHHEEEEEEEEECCC
T ss_pred CCHHH----HHHHHHHHhcCCEEEEEcc
Confidence 64322 2333344444445555543
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.017 Score=57.91 Aligned_cols=90 Identities=12% Similarity=0.093 Sum_probs=53.6
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCC---cEEEE-eCC-hhHHHHHHHhhcccCCCCeeeeC-CHHHHHhccCCCcEEEE
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGF---PISVY-NRT-TSKVDETLDRAHREGQLPLTGHY-TPRDFVLSIQRPRSVII 78 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~---~V~v~-dr~-~~~~~~l~~~~~~~g~~~i~~~~-s~~e~~~~l~~~dvIil 78 (503)
++||+|+| .|.+|+.+.+.|.+.+| ++... +++ ..+.-.+ .+. .+...+ ++++ .. .+|+||+
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~--~g~-----~i~~~~~~~~~-~~---~~DvV~~ 74 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGF--AES-----SLRVGDVDSFD-FS---SVGLAFF 74 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEE--TTE-----EEECEEGGGCC-GG---GCSEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCcccc--CCc-----ceEEecCCHHH-hc---CCCEEEE
Confidence 46899999 79999999999987665 44444 433 2110000 000 112211 2222 23 3999999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
|+|.. ...+.+..+. ..|..+||.|...
T Consensus 75 a~g~~-~s~~~a~~~~---~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 75 AAAAE-VSRAHAERAR---AAGCSVIDLSGAL 102 (340)
T ss_dssp CSCHH-HHHHHHHHHH---HTTCEEEETTCTT
T ss_pred cCCcH-HHHHHHHHHH---HCCCEEEEeCCCC
Confidence 99875 3344444443 4578899998764
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.072 Score=50.97 Aligned_cols=69 Identities=10% Similarity=0.161 Sum_probs=48.2
Q ss_pred cEEEEcc-cHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEEEecC
Q 010702 8 RIGLAGL-AVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 8 ~IgIIGl-G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIil~vp 81 (503)
+|.|.|. |.+|+.++..|++. |++|.+.+|++++.+.+...+.. +.. ..+.+++.+.++.+|+||.+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGIT-----VRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCE-----EEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCe-----EEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 4788986 99999999999998 99999999998876655433211 111 1244445455556898887754
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.11 Score=49.33 Aligned_cols=82 Identities=13% Similarity=0.181 Sum_probs=55.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+..=+.+...+
T Consensus 11 ~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~~ 70 (261)
T 3n74_A 11 VALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIG-----------------DA---ALAVAADISKEADV 70 (261)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----------------TT---EEEEECCTTSHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC-----------------Cc---eEEEEecCCCHHHH
Confidence 466666 5889999999999999999999999988776654310 00 12222223444556
Q ss_pred HHHHHHHHhcCCCCCEEEecCCC
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+++++++...+.+=+++|++...
T Consensus 71 ~~~~~~~~~~~g~id~li~~Ag~ 93 (261)
T 3n74_A 71 DAAVEAALSKFGKVDILVNNAGI 93 (261)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCcc
Confidence 67777666555555778777554
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=94.86 E-value=0.03 Score=53.79 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=49.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIil~vp 81 (503)
|+|.|.|. |.+|+.++..|++. |++|.+.+|++++.+.+...+.. +.. ..+.+++.+.++.+|+||.+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~-----~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVE-----VRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCE-----EEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCe-----EEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 47889986 99999999999998 99999999998776655432211 111 1234444444555888887654
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.082 Score=50.85 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=55.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
+|-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+... .. ..++..=+.+...+
T Consensus 7 ~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~~~ 66 (281)
T 3m1a_A 7 VWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYP-----------------DR---AEAISLDVTDGERI 66 (281)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCT-----------------TT---EEEEECCTTCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------------CC---ceEEEeeCCCHHHH
Confidence 455556 5999999999999999999999999887766554210 01 22233334444566
Q ss_pred HHHHHHHHhcCCCCCEEEecCCC
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.+++++.....+=++||++...
T Consensus 67 ~~~~~~~~~~~g~id~lv~~Ag~ 89 (281)
T 3m1a_A 67 DVVAADVLARYGRVDVLVNNAGR 89 (281)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHhCCCCCEEEECCCc
Confidence 77776666555455788887653
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.21 Score=49.96 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=37.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA 49 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~ 49 (503)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.+
T Consensus 173 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG 216 (356)
T 1pl8_A 173 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIG 216 (356)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC
Confidence 469999999999999988888998 8999999999887766554
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.088 Score=50.65 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=51.6
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeC-------------ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCc
Q 010702 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNR-------------TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 9 IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr-------------~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~d 74 (503)
+-|.| .|-+|..+|+.|++.|++|.+.+| +.+..++..+.. -.. ..+
T Consensus 14 ~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~--~~~ 74 (277)
T 3tsc_A 14 AFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLV-----------------EAA--NRR 74 (277)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHH-----------------HHT--TCC
T ss_pred EEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHH-----------------Hhc--CCe
Confidence 44555 689999999999999999999998 444444333211 000 123
Q ss_pred EEEEe--cCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 75 SVIIL--VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 75 vIil~--vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.++. +.+...++.+++++.....+=+++|++...
T Consensus 75 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~ 111 (277)
T 3tsc_A 75 IVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGV 111 (277)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 33332 344456677777776655555788887654
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.16 Score=48.49 Aligned_cols=40 Identities=25% Similarity=0.469 Sum_probs=33.2
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 47 (503)
|+.+| | .|-+|..+|+.|++.|++|.+.+|+++..++..+
T Consensus 11 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 52 (267)
T 3t4x_A 11 KTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIK 52 (267)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 44444 5 5899999999999999999999999887766554
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.041 Score=52.86 Aligned_cols=78 Identities=17% Similarity=0.293 Sum_probs=49.4
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHH
Q 010702 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (503)
Q Consensus 9 IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 87 (503)
+-|.| .|-+|..+|+.|++.|++|.+.+|+.++.+++... . ...+..=+.+...++
T Consensus 19 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~--------------------~---~~~~~~Dv~d~~~v~ 75 (266)
T 3p19_A 19 VVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLP--------------------N---TLCAQVDVTDKYTFD 75 (266)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTCCT--------------------T---EEEEECCTTCHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhhcC--------------------C---ceEEEecCCCHHHHH
Confidence 44556 58999999999999999999999998764432110 0 112222234444566
Q ss_pred HHHHHHHhcCCCCCEEEecCCC
Q 010702 88 QTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 88 ~vl~~l~~~l~~g~iIId~st~ 109 (503)
.+++.+.....+=+++|++...
T Consensus 76 ~~~~~~~~~~g~iD~lvnnAg~ 97 (266)
T 3p19_A 76 TAITRAEKIYGPADAIVNNAGM 97 (266)
T ss_dssp HHHHHHHHHHCSEEEEEECCCC
T ss_pred HHHHHHHHHCCCCCEEEECCCc
Confidence 6666665544444677776543
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.082 Score=50.38 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=56.8
Q ss_pred cEEEEcc-c-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCC
Q 010702 8 RIGLAGL-A-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (503)
Q Consensus 8 ~IgIIGl-G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~ 83 (503)
++-|.|. | -+|..+|+.|+++|++|.+.+|+.++.++..+..... ...++.++. +.+.
T Consensus 24 ~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------------------~~~~~~~~~~Dl~~~ 85 (266)
T 3o38_A 24 VVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADL------------------GLGRVEAVVCDVTST 85 (266)
T ss_dssp EEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT------------------CSSCEEEEECCTTCH
T ss_pred EEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc------------------CCCceEEEEeCCCCH
Confidence 4677788 8 4999999999999999999999998876655432100 002333332 3444
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++.+++++.....+=+++|++...
T Consensus 86 ~~v~~~~~~~~~~~g~id~li~~Ag~ 111 (266)
T 3o38_A 86 EAVDALITQTVEKAGRLDVLVNNAGL 111 (266)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 56777777776655555788887654
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.078 Score=50.44 Aligned_cols=83 Identities=12% Similarity=0.204 Sum_probs=55.5
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCC
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAG 83 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~ 83 (503)
|+.+| | .|-+|..+|+.|++.|++|.+.+|+.+..+++.+.... .. .++.++ =+.+.
T Consensus 13 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~~~Dv~d~ 73 (256)
T 3gaf_A 13 AVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQ----------------AG---GKAIGLECNVTDE 73 (256)
T ss_dssp CEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHH----------------TT---CCEEEEECCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----------------cC---CcEEEEECCCCCH
Confidence 44444 5 69999999999999999999999999877666543110 01 233333 23444
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++.+++++.....+=+++|++...
T Consensus 74 ~~v~~~~~~~~~~~g~id~lv~nAg~ 99 (256)
T 3gaf_A 74 QHREAVIKAALDQFGKITVLVNNAGG 99 (256)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 56777777776655555788877554
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.09 Score=51.38 Aligned_cols=83 Identities=8% Similarity=0.065 Sum_probs=56.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~~ 84 (503)
.|-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... .. .++.++ =+.+..
T Consensus 33 ~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~----------------~~---~~~~~~~~Dv~d~~ 93 (301)
T 3tjr_A 33 AAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRG----------------QG---FDAHGVVCDVRHLD 93 (301)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----------------TT---CCEEEEECCTTCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh----------------cC---CceEEEEccCCCHH
Confidence 466666 58999999999999999999999999887766543210 01 233322 334445
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++++++.+.....+=+++|++...
T Consensus 94 ~v~~~~~~~~~~~g~id~lvnnAg~ 118 (301)
T 3tjr_A 94 EMVRLADEAFRLLGGVDVVFSNAGI 118 (301)
T ss_dssp HHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCc
Confidence 6677777766555455788887654
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.11 Score=50.10 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=55.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++-|.| .|-+|..+|+.|++.|++|.+.+|+.++.+++.+... .. ...+..=+.+...+
T Consensus 7 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~~v 66 (281)
T 3zv4_A 7 VALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHG-----------------GN---AVGVVGDVRSLQDQ 66 (281)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTB-----------------TT---EEEEECCTTCHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcC-----------------Cc---EEEEEcCCCCHHHH
Confidence 355555 6899999999999999999999999988776554310 00 12222223444566
Q ss_pred HHHHHHHHhcCCCCCEEEecCCC
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.+++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~g~iD~lvnnAg~ 89 (281)
T 3zv4_A 67 KRAAERCLAAFGKIDTLIPNAGI 89 (281)
T ss_dssp HHHHHHHHHHHSCCCEEECCCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCc
Confidence 77777776655555788887654
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.066 Score=50.48 Aligned_cols=84 Identities=15% Similarity=0.227 Sum_probs=53.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCC-hhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRT-TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKA 82 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~ 82 (503)
++|-|.| .|.+|..+++.|+++|++|.+.+|+ +++.+++.+... + .. .++.++ =+.+
T Consensus 8 k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~--~~---~~~~~~~~D~~~ 68 (258)
T 3afn_B 8 KRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMR--------------A--DG---GDAAFFAADLAT 68 (258)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHH--------------H--TT---CEEEEEECCTTS
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHH--------------h--cC---CceEEEECCCCC
Confidence 3466666 5999999999999999999999998 766655443210 0 00 222222 2333
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
...++.+++++.....+=++||++...
T Consensus 69 ~~~~~~~~~~~~~~~g~id~vi~~Ag~ 95 (258)
T 3afn_B 69 SEACQQLVDEFVAKFGGIDVLINNAGG 95 (258)
T ss_dssp HHHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 445666666666554445788887653
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.044 Score=58.26 Aligned_cols=125 Identities=7% Similarity=0.047 Sum_probs=72.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|.|||+|..|..+|.+|+..|. +++++|.+.=....+..+.... ..++-.-+....+.+..+. +++-+.+.+..
T Consensus 33 ~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lN-p~v~v~~~~~~- 110 (531)
T 1tt5_A 33 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELN-SDVSGSFVEES- 110 (531)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTC-TTSBCCEESSC-
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhC-CCCeEEEeCCC-
Confidence 589999999999999999999997 7999998765455554331100 0000011122223333321 44545555542
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
+...++.....+..-++||+++- .+..-..+.+.+...++-|+.+.+.|
T Consensus 111 -~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~ln~~c~~~~iplI~~~~~G 159 (531)
T 1tt5_A 111 -PENLLDNDPSFFCRFTVVVATQL-PESTSLRLADVLWNSQIPLLICRTYG 159 (531)
T ss_dssp -HHHHHHSCGGGGGGCSEEEEESC-CHHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred -cchhhhhhHHHhcCCCEEEEeCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 34333322334455689998854 34444455666677788888775544
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.22 Score=48.51 Aligned_cols=103 Identities=12% Similarity=0.073 Sum_probs=72.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCC-----cchhhhHHHHHHHHhcCCC-CC
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGC-----IIRAVFLDRIKKAYQRNPN-LA 398 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gc-----ii~s~lL~~i~~~~~~~~~-~~ 398 (503)
.+.++.+|+++|.+.+..+..++|++.+.++. ++|..+++++|+..- --+|++.+ .+. +.
T Consensus 174 ~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~------G~d~~~~~~~~~~~~~i~~~~~~s~~~~--------~~~~~~ 239 (296)
T 3qha_A 174 PGAGTRMKLARNMLTFTSYAAACEAMKLAEAA------GLDLQALGRVVRHTDALTGGPGAIMVRD--------NMKDLE 239 (296)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHCCGGGGCCCS--------SCSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHhhhcchHHHHhcCcccCHHhh--------chhhhh
Confidence 47889999999999999999999999998843 399999977776421 22343322 111 11
Q ss_pred CCcchhhHhH--HH-HhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010702 399 SLVVDPEFAR--EM-VQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (503)
Q Consensus 399 ~ll~~~~~~~--~~-~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~ 443 (503)
. .++.|.- .. .-...+++-++..|-+.|+|+|.+.++...|..
T Consensus 240 ~--~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~ 285 (296)
T 3qha_A 240 P--DNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAA 285 (296)
T ss_dssp T--TSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred c--CCCCCchhhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 1 1233322 00 344567888999999999999999999886543
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.11 Score=51.79 Aligned_cols=124 Identities=11% Similarity=-0.008 Sum_probs=65.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|||+|..|+.+|.+|+..|. +++++|.+.-....+..+... ....+...+....+.+..+ .+++-+...+..
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~i-nP~v~v~~~~~~ 112 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI-FPLMDATGVKLS 112 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHH-CTTCEEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHh-CCCCEEEEEecc
Confidence 3589999999999999999999997 688999876322222211000 0000001111222222222 145555554321
Q ss_pred ---------hh--HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 84 ---------SP--VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 84 ---------~~--v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
.. .....+.+...+..-++|+|++-... .-..+...+...++-++.+
T Consensus 113 i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~-tR~lin~~c~~~~~plI~a 170 (340)
T 3rui_A 113 IPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRE-SRWLPSLLSNIENKTVINA 170 (340)
T ss_dssp CCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTG-GGHHHHHHHHHTTCEEEEE
T ss_pred ccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHH-HHHHHHHHHHHcCCcEEEe
Confidence 00 01111223333445689999876553 3334455666677777765
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.01 Score=60.25 Aligned_cols=100 Identities=13% Similarity=0.025 Sum_probs=65.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh-------hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT-------SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~-------~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
.||.|+|.|..|.++|+.+...|. +|+++|++- +.+..+......... ......+++|+++. +|++|=
T Consensus 189 ~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~-~~~~~~~L~eav~~---ADV~IG 264 (398)
T 2a9f_A 189 VSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTN-REFKSGTLEDALEG---ADIFIG 264 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHS-CTTCCCSCSHHHHT---TCSEEE
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccC-cccchhhHHHHhcc---CCEEEe
Confidence 589999999999999999999998 999999873 112221111100000 01124578888887 898776
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
+..++... +++...+.++.||+++||-.|+.+
T Consensus 265 ~Sapgl~T----~EmVk~Ma~~pIIfalsNPt~E~~ 296 (398)
T 2a9f_A 265 VSAPGVLK----AEWISKMAARPVIFAMANPIPEIY 296 (398)
T ss_dssp CCSTTCCC----HHHHHTSCSSCEEEECCSSSCSSC
T ss_pred cCCCCCCC----HHHHHhhCCCCEEEECCCCCccCC
Confidence 54433223 445555678999999999775433
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.1 Score=49.42 Aligned_cols=84 Identities=13% Similarity=0.220 Sum_probs=55.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAG 83 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~ 83 (503)
+++-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+... + .. .++.++ =+.+.
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------~--~~---~~~~~~~~D~~~~ 63 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEIN--------------Q--AG---GHAVAVKVDVSDR 63 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------H--TT---CCEEEEECCTTSH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------h--cC---CcEEEEEecCCCH
Confidence 3466666 6899999999999999999999999887665543210 0 00 222222 23344
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++++++++...+.+=+++|++...
T Consensus 64 ~~v~~~~~~~~~~~g~id~lv~nAg~ 89 (256)
T 1geg_A 64 DQVFAAVEQARKTLGGFDVIVNNAGV 89 (256)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 55667777766655555788887643
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.16 Score=48.24 Aligned_cols=84 Identities=14% Similarity=0.230 Sum_probs=54.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~~ 84 (503)
+|-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+.. .+.... .++.++ =+.+..
T Consensus 9 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------~~~~~~---~~~~~~~~D~~~~~ 71 (260)
T 2z1n_A 9 LAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRI--------------ASLVSG---AQVDIVAGDIREPG 71 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--------------HHHSTT---CCEEEEECCTTCHH
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH--------------HhcCCC---CeEEEEEccCCCHH
Confidence 455666 599999999999999999999999988766554321 000000 123222 234445
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++.+..... =+++|++...
T Consensus 72 ~v~~~~~~~~~~~g-id~lv~~Ag~ 95 (260)
T 2z1n_A 72 DIDRLFEKARDLGG-ADILVYSTGG 95 (260)
T ss_dssp HHHHHHHHHHHTTC-CSEEEECCCC
T ss_pred HHHHHHHHHHHhcC-CCEEEECCCC
Confidence 66777777666554 4778876653
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.13 Score=49.54 Aligned_cols=79 Identities=10% Similarity=0.102 Sum_probs=53.1
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCChh
Q 010702 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGSP 85 (503)
Q Consensus 9 IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~~~ 85 (503)
+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .++.++ =+.+...
T Consensus 30 vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dv~d~~~ 87 (277)
T 4dqx_A 30 CIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIG----------------------SKAFGVRVDVSSAKD 87 (277)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC----------------------TTEEEEECCTTCHHH
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC----------------------CceEEEEecCCCHHH
Confidence 44555 6899999999999999999999999887766654310 122222 2344455
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++.+.....+=+++|++...
T Consensus 88 v~~~~~~~~~~~g~iD~lv~nAg~ 111 (277)
T 4dqx_A 88 AESMVEKTTAKWGRVDVLVNNAGF 111 (277)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 666676666555455777776553
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.1 Score=49.87 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=54.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.. . .. ...+..=+.+...
T Consensus 7 k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------~---------~~---~~~~~~D~~~~~~ 66 (263)
T 2a4k_A 7 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL--------E---------AE---AIAVVADVSDPKA 66 (263)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC--------C---------SS---EEEEECCTTSHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------c---------Cc---eEEEEcCCCCHHH
Confidence 3566666 589999999999999999999999988776654421 0 01 1222222334445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
++.+++++.....+=+++|++..
T Consensus 67 v~~~~~~~~~~~g~iD~lvnnAg 89 (263)
T 2a4k_A 67 VEAVFAEALEEFGRLHGVAHFAG 89 (263)
T ss_dssp HHHHHHHHHHHHSCCCEEEEGGG
T ss_pred HHHHHHHHHHHcCCCcEEEECCC
Confidence 66666666655545577887654
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.13 Score=49.55 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=51.5
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCC----------------hhHHHHHHHhhcccCCCCeeeeCCHHHHHhccC
Q 010702 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRT----------------TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 9 IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~----------------~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~ 71 (503)
+-|.| .|-+|..+|+.|++.|++|.+.+|+ .+..+++.+.. .. .
T Consensus 14 ~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~-~ 74 (286)
T 3uve_A 14 AFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLV------------------KG-H 74 (286)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHH------------------HT-T
T ss_pred EEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHH------------------hh-c
Confidence 44556 5889999999999999999999987 33333322211 00 0
Q ss_pred CCcEEEEe--cCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 72 RPRSVIIL--VKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 72 ~~dvIil~--vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++.++. +.+...++.+++++.....+=+++|++...
T Consensus 75 ~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 114 (286)
T 3uve_A 75 NRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGI 114 (286)
T ss_dssp TCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 12333333 344456777777776655555788887654
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.13 Score=49.70 Aligned_cols=82 Identities=12% Similarity=0.158 Sum_probs=54.2
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+-.=+.+...
T Consensus 30 k~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~d~~~ 89 (277)
T 3gvc_A 30 KVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIG-----------------CG---AAACRVDVSDEQQ 89 (277)
T ss_dssp CEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC-----------------SS---CEEEECCTTCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC-----------------Cc---ceEEEecCCCHHH
Confidence 44455 5 6899999999999999999999999887766554310 00 2222222344455
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++.....+=+++|++...
T Consensus 90 v~~~~~~~~~~~g~iD~lvnnAg~ 113 (277)
T 3gvc_A 90 IIAMVDACVAAFGGVDKLVANAGV 113 (277)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666676666555455777776554
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.095 Score=50.57 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=56.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++.... -.. ...+..=+.+...+
T Consensus 34 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~d~~~v 96 (276)
T 3r1i_A 34 RALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV--------------GGK---ALPIRCDVTQPDQV 96 (276)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--------------TCC---CEEEECCTTCHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCe---EEEEEcCCCCHHHH
Confidence 455556 599999999999999999999999988776655432100 001 22222234454567
Q ss_pred HHHHHHHHhcCCCCCEEEecCCC
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+++++++.....+=+++|++...
T Consensus 97 ~~~~~~~~~~~g~iD~lvnnAg~ 119 (276)
T 3r1i_A 97 RGMLDQMTGELGGIDIAVCNAGI 119 (276)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 77777776655555788887654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.097 Score=49.94 Aligned_cols=85 Identities=13% Similarity=0.179 Sum_probs=54.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~~ 84 (503)
++-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+..... ... .++.++ =+.+..
T Consensus 9 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--------------~~~---~~~~~~~~D~~~~~ 71 (267)
T 2gdz_A 9 VALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ--------------FEP---QKTLFIQCDVADQQ 71 (267)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT--------------SCG---GGEEEEECCTTSHH
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh--------------cCC---CceEEEecCCCCHH
Confidence 466666 599999999999999999999999988766544321100 000 122222 233444
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++++...+.+=+++|++...
T Consensus 72 ~v~~~~~~~~~~~g~id~lv~~Ag~ 96 (267)
T 2gdz_A 72 QLRDTFRKVVDHFGRLDILVNNAGV 96 (267)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666666665555455788887654
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.075 Score=51.32 Aligned_cols=83 Identities=17% Similarity=0.208 Sum_probs=55.7
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~~ 84 (503)
.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+..
T Consensus 26 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dv~d~~ 86 (279)
T 3sju_A 26 TAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA----------------G---HDVDGSSCDVTSTD 86 (279)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------T---CCEEEEECCTTCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEECCCCCHH
Confidence 355556 589999999999999999999999998877665432100 0 223332 234445
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++++.....+=+++|++...
T Consensus 87 ~v~~~~~~~~~~~g~id~lv~nAg~ 111 (279)
T 3sju_A 87 EVHAAVAAAVERFGPIGILVNSAGR 111 (279)
T ss_dssp HHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCC
Confidence 6777777776655555788877654
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.098 Score=49.45 Aligned_cols=81 Identities=12% Similarity=0.153 Sum_probs=54.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAG 83 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~ 83 (503)
+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .++.++ =+.+.
T Consensus 7 k~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dv~~~ 64 (247)
T 3rwb_A 7 KTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIG----------------------KKARAIAADISDP 64 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC----------------------TTEEECCCCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC----------------------CceEEEEcCCCCH
Confidence 3455666 5899999999999999999999999988776654310 122221 12344
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++.+++++.....+=+++|++...
T Consensus 65 ~~v~~~~~~~~~~~g~id~lv~nAg~ 90 (247)
T 3rwb_A 65 GSVKALFAEIQALTGGIDILVNNASI 90 (247)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCC
Confidence 45677777666655555788877654
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.1 Score=49.36 Aligned_cols=84 Identities=14% Similarity=0.248 Sum_probs=51.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC-ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNR-TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr-~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~ 82 (503)
++|-|.| .|.+|..+++.|++.|++|.+.+| ++++.+++.+... + .. .++.++. +.+
T Consensus 8 k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~--------------~--~~---~~~~~~~~D~~~ 68 (261)
T 1gee_A 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIK--------------K--VG---GEAIAVKGDVTV 68 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH--------------H--TT---CEEEEEECCTTS
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHH--------------h--cC---CceEEEECCCCC
Confidence 3465665 699999999999999999999999 7766555443210 0 00 2222222 233
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
...++++++++.....+=++||++...
T Consensus 69 ~~~~~~~~~~~~~~~g~id~li~~Ag~ 95 (261)
T 1gee_A 69 ESDVINLVQSAIKEFGKLDVMINNAGL 95 (261)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 345566666655544444777776543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.067 Score=53.92 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=57.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH-HhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL-DRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+. +.+.. .+.-..+.+.+.+.....|+||-++.....
T Consensus 189 ~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~----~v~~~~~~~~~~~~~~~~D~vid~~g~~~~ 264 (366)
T 1yqd_A 189 KHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGAD----SFLVSRDQEQMQAAAGTLDGIIDTVSAVHP 264 (366)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCS----EEEETTCHHHHHHTTTCEEEEEECCSSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCc----eEEeccCHHHHHHhhCCCCEEEECCCcHHH
Confidence 4699999999999999999999999999999998887765 33321 111122222222212236777777765433
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
++..+ +.+.++-.++..+.
T Consensus 265 ~~~~~----~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 265 LLPLF----GLLKSHGKLILVGA 283 (366)
T ss_dssp SHHHH----HHEEEEEEEEECCC
T ss_pred HHHHH----HHHhcCCEEEEEcc
Confidence 33333 23334444444443
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.12 Score=49.51 Aligned_cols=80 Identities=11% Similarity=0.132 Sum_probs=54.4
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCChh
Q 010702 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGSP 85 (503)
Q Consensus 9 IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~~~ 85 (503)
+-|.| .|-+|..+|+.|++.|++|.+.+|+.++.+++.+... .++.++ =+.+...
T Consensus 30 vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dv~d~~~ 87 (266)
T 3grp_A 30 ALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLG----------------------KDVFVFSANLSDRKS 87 (266)
T ss_dssp EEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC----------------------SSEEEEECCTTSHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC----------------------CceEEEEeecCCHHH
Confidence 44445 6899999999999999999999999887766543210 122222 2344456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++.+++.+.....+=+++|++....
T Consensus 88 v~~~~~~~~~~~g~iD~lvnnAg~~ 112 (266)
T 3grp_A 88 IKQLAEVAEREMEGIDILVNNAGIT 112 (266)
T ss_dssp HHHHHHHHHHHHTSCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 6777776666555557888876543
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.13 Score=49.67 Aligned_cols=85 Identities=19% Similarity=0.286 Sum_probs=55.9
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCC-cEEEEecCCCh
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRP-RSVIILVKAGS 84 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~-dvIil~vp~~~ 84 (503)
|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.+++.+.. .+.-.. . .++..=+.+..
T Consensus 34 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--------------~~~~~~---~~~~~~~Dv~d~~ 96 (281)
T 4dry_A 34 RIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEI--------------GGRTGN---IVRAVVCDVGDPD 96 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--------------HHHHSS---CEEEEECCTTCHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH--------------HhcCCC---eEEEEEcCCCCHH
Confidence 45555 5 689999999999999999999999998876655431 111110 1 12222234445
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++++++++.....+=+++|++...
T Consensus 97 ~v~~~~~~~~~~~g~iD~lvnnAG~ 121 (281)
T 4dry_A 97 QVAALFAAVRAEFARLDLLVNNAGS 121 (281)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 6777777776655555788887654
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.15 Score=51.71 Aligned_cols=100 Identities=12% Similarity=0.097 Sum_probs=58.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCC--c---EEEEeCChhH----HHHHHH---hhcccCCCCeeeeCCHHHHHhccCCC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGF--P---ISVYNRTTSK----VDETLD---RAHREGQLPLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~--~---V~v~dr~~~~----~~~l~~---~~~~~g~~~i~~~~s~~e~~~~l~~~ 73 (503)
+||+||| +|.+|.++|..|+..+. + |.+++.+.+. ++-..- .....-..++....+..+..++ +
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~d---a 109 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFED---V 109 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---C
T ss_pred CEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCC---C
Confidence 5899999 79999999999998875 2 7775543322 221111 1110000024445555555555 9
Q ss_pred cEEEEecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 74 RSVIILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 74 dvIil~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
|+||++--. +. .++++...+.....++.+|+..||-
T Consensus 110 DvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNP 160 (375)
T 7mdh_A 110 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP 160 (375)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 999997521 11 1233334555554577888888873
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.14 Score=48.10 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=55.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec--CCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v--p~~~ 84 (503)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... .. ....++..-+ .+..
T Consensus 16 ~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---------------~~-~~~~~~~~d~d~~~~~ 79 (247)
T 3i1j_A 16 VILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSA---------------GQ-PQPLIIALNLENATAQ 79 (247)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT---------------TS-CCCEEEECCTTTCCHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhc---------------CC-CCceEEEeccccCCHH
Confidence 355556 599999999999999999999999998877665432110 00 0122333223 3334
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++.+.....+=+++|++...
T Consensus 80 ~~~~~~~~~~~~~g~id~lv~nAg~ 104 (247)
T 3i1j_A 80 QYRELAARVEHEFGRLDGLLHNASI 104 (247)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCcc
Confidence 5666777666655555788887654
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.14 Score=47.87 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=34.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 47 (503)
++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+++.+
T Consensus 8 ~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 1cyd_A 8 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK 49 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46777775 999999999999999999999999887665543
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.1 Score=49.02 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=54.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|.+|..++..|++.|++|.+.+|++++.+++.+.... .. -.. ..++..=+.+...
T Consensus 3 k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------~~---~~~---~~~~~~D~~~~~~ 66 (250)
T 2cfc_A 3 RVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWH----------AY---ADK---VLRVRADVADEGD 66 (250)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHST----------TT---GGG---EEEEECCTTCHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH----------hc---CCc---EEEEEecCCCHHH
Confidence 4567776 59999999999999999999999998877665442100 00 001 1222222334345
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++++++++...+.+=++||++...
T Consensus 67 ~~~~~~~~~~~~~~id~li~~Ag~ 90 (250)
T 2cfc_A 67 VNAAIAATMEQFGAIDVLVNNAGI 90 (250)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 666666665554445778876643
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.44 E-value=0.15 Score=48.76 Aligned_cols=84 Identities=8% Similarity=0.130 Sum_probs=56.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAG 83 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~ 83 (503)
++|-|.| .|.+|..+|+.|++.|++|.+.+|+++..+++.+... + .. .++.++ =+.+.
T Consensus 32 k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~--------------~--~~---~~~~~~~~Dl~~~ 92 (272)
T 1yb1_A 32 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCK--------------G--LG---AKVHTFVVDCSNR 92 (272)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------H--TT---CCEEEEECCTTCH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHH--------------h--cC---CeEEEEEeeCCCH
Confidence 3566776 6999999999999999999999999887665543211 0 00 222222 23344
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++.+++.+.....+=++||++...
T Consensus 93 ~~v~~~~~~~~~~~g~iD~li~~Ag~ 118 (272)
T 1yb1_A 93 EDIYSSAKKVKAEIGDVSILVNNAGV 118 (272)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHCCCCcEEEECCCc
Confidence 45667777776655555788887654
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.31 Score=47.01 Aligned_cols=84 Identities=12% Similarity=0.210 Sum_probs=54.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC-ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCC
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNR-TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr-~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~ 83 (503)
++-|.| .|-+|..+|+.|++.|++|.+.+| +++..+.+.+... .....++.++. +.+.
T Consensus 27 ~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~------------------~~~~~~~~~~~~Dv~d~ 88 (281)
T 3v2h_A 27 TAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVA------------------GLSSGTVLHHPADMTKP 88 (281)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHH------------------TTCSSCEEEECCCTTCH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHh------------------hccCCcEEEEeCCCCCH
Confidence 355555 689999999999999999999999 5555554443211 00012333332 3344
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++.+++++.....+=+++|++...
T Consensus 89 ~~v~~~~~~~~~~~g~iD~lv~nAg~ 114 (281)
T 3v2h_A 89 SEIADMMAMVADRFGGADILVNNAGV 114 (281)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEECCCC
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCC
Confidence 56777777777666566788887654
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.13 Score=49.66 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=53.1
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeC-ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCCh
Q 010702 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNR-TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (503)
Q Consensus 9 IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr-~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~~ 84 (503)
+-|.| .|-+|..+|+.|++.|++|.+.+| +++..+++.+.... .. .++.++ =+.+..
T Consensus 32 ~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~----------------~~---~~~~~~~~Dv~d~~ 92 (280)
T 4da9_A 32 AIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSG----------------LG---ARVIFLRADLADLS 92 (280)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHH----------------TT---CCEEEEECCTTSGG
T ss_pred EEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHh----------------cC---CcEEEEEecCCCHH
Confidence 44555 689999999999999999999985 66665554432110 01 233332 244555
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++.+.....+=+++|++...
T Consensus 93 ~v~~~~~~~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 93 SHQATVDAVVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp GHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 6777777776655555788877654
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.072 Score=48.39 Aligned_cols=41 Identities=12% Similarity=0.015 Sum_probs=35.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 47 (503)
.+|.|+| .|.+|..+++.+...|.+|.+.++++++.+.+.+
T Consensus 40 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~ 81 (198)
T 1pqw_A 40 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR 81 (198)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT
T ss_pred CEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 4688999 6999999999999999999999999887765543
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.21 Score=46.94 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=33.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 47 (503)
+|-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+
T Consensus 13 ~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 53 (254)
T 2wsb_A 13 CAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQ 53 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 466666 5999999999999999999999999887665543
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.38 E-value=0.095 Score=49.82 Aligned_cols=91 Identities=12% Similarity=0.185 Sum_probs=52.2
Q ss_pred CCcCCCCc-EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEE
Q 010702 1 MEASALSR-IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 1 M~~~~~~~-IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIi 77 (503)
|+...++| +-|.| .|-+|..+|+.|++.|++|.+.+|+.+. .+.+.+... .. -.. ..++.
T Consensus 1 M~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-----------~~---~~~---~~~~~ 63 (264)
T 3i4f_A 1 MSLGRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYK-----------DV---EER---LQFVQ 63 (264)
T ss_dssp -----CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTG-----------GG---GGG---EEEEE
T ss_pred CCcccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHH-----------hc---CCc---eEEEE
Confidence 44333344 55556 5899999999999999999998766543 333332210 00 011 22222
Q ss_pred EecCCChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
.=+.+...++++++++.....+=+++|++..
T Consensus 64 ~Dl~~~~~v~~~~~~~~~~~g~id~lv~~Ag 94 (264)
T 3i4f_A 64 ADVTKKEDLHKIVEEAMSHFGKIDFLINNAG 94 (264)
T ss_dssp CCTTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred ecCCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 3344545677777777665555578887766
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.034 Score=56.55 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=31.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
.+|.|||.|..|..+|..|++.|++|+++++++.
T Consensus 27 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 60 (398)
T 2xdo_A 27 KNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4799999999999999999999999999998754
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.036 Score=56.35 Aligned_cols=94 Identities=14% Similarity=0.264 Sum_probs=55.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCC-CcEE-EE-eC-ChhH-HHHHHHh--------hcccCCCCeeeeCCHHHHHhccCC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKG-FPIS-VY-NR-TTSK-VDETLDR--------AHREGQLPLTGHYTPRDFVLSIQR 72 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G-~~V~-v~-dr-~~~~-~~~l~~~--------~~~~g~~~i~~~~s~~e~~~~l~~ 72 (503)
+|||||| .|..|.-|.+.|.++- +++. ++ ++ +..+ +.+.... +..+ +.+... +.++..++
T Consensus 20 ~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~--~~v~~~-~~~~~~~~--- 93 (381)
T 3hsk_A 20 KKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQD--IVVQEC-KPEGNFLE--- 93 (381)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHT--CBCEES-SSCTTGGG---
T ss_pred cEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhccccccccccccccc--ceEEeC-chhhhccc---
Confidence 5799999 6999999999988875 3553 44 23 2221 2211100 0000 012211 22212344
Q ss_pred CcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 73 PRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 73 ~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
+|+||+|+|.+ ...+....+. ..|..|||.|+..
T Consensus 94 ~Dvvf~alp~~-~s~~~~~~~~---~~G~~VIDlSa~f 127 (381)
T 3hsk_A 94 CDVVFSGLDAD-VAGDIEKSFV---EAGLAVVSNAKNY 127 (381)
T ss_dssp CSEEEECCCHH-HHHHHHHHHH---HTTCEEEECCSTT
T ss_pred CCEEEECCChh-HHHHHHHHHH---hCCCEEEEcCCcc
Confidence 99999999985 4555555554 4689999999864
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.7 Score=44.62 Aligned_cols=103 Identities=15% Similarity=0.182 Sum_probs=72.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHH-HHhcCCCCCCCcch
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKK-AYQRNPNLASLVVD 403 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~-~~~~~~~~~~ll~~ 403 (503)
.+.+.+.|.+.|++.+..+..+.|++.+.++. +++.+++.+++..+. ..|+.+..... .++.+.. ..
T Consensus 168 ~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------G~~~~~~~~~~~~~~-~~s~~~~~~~~~~l~~~~~-~g---- 235 (299)
T 1vpd_A 168 IGAGNVTKLANQVIVALNIAAMSEALTLATKA------GVNPDLVYQAIRGGL-AGSTVLDAKAPMVMDRNFK-PG---- 235 (299)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTST-TCCHHHHHHHHHHHTTCCC-CS----
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHccC-CCCHHHHHhhhHhhcCCCC-CC----
Confidence 36778999999999999999999999987642 389999999998873 45665554333 3322211 11
Q ss_pred hhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010702 404 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (503)
Q Consensus 404 ~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~ 443 (503)
+.- ......++.++..|-+.|+|+|...+....+..
T Consensus 236 --~~~--~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~ 271 (299)
T 1vpd_A 236 --FRI--DLHIKDLANALDTSHGVGAQLPLTAAVMEMMQA 271 (299)
T ss_dssp --SBH--HHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred --CCh--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 111 111134588999999999999999988885553
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.35 E-value=0.17 Score=48.59 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=52.5
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeC-------------ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCc
Q 010702 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNR-------------TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 9 IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr-------------~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~d 74 (503)
+-|.| .|-+|..+|+.|++.|++|.+.+| ++++.+++.+... .. ..+
T Consensus 18 ~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--~~~ 78 (280)
T 3pgx_A 18 AFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVE-----------------DQ--GRK 78 (280)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHH-----------------TT--TCC
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHH-----------------hc--CCe
Confidence 44555 689999999999999999999998 4454444433210 00 023
Q ss_pred EEEE--ecCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 75 SVII--LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 75 vIil--~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.++ =+.+...++++++++.....+=+++|++...
T Consensus 79 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~ 115 (280)
T 3pgx_A 79 ALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGV 115 (280)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3332 3445556777777776655555788887654
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.22 Score=43.75 Aligned_cols=120 Identities=11% Similarity=0.042 Sum_probs=71.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHhhcccCCC-CeeeeCCHHHHHhcc-CCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTSKVDETLDRAHREGQL-PLTGHYTPRDFVLSI-QRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~-~i~~~~s~~e~~~~l-~~~dvIil~vp~ 82 (503)
.+|--||+|. | .++..+++. +.+|+++|.+++.++...+.....+.. ++....+..+..... ...|+|++.-+.
T Consensus 27 ~~vldiG~G~-G-~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~~ 104 (178)
T 3hm2_A 27 ETLWDIGGGS-G-SIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGL 104 (178)
T ss_dssp EEEEEESTTT-T-HHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-T
T ss_pred CeEEEeCCCC-C-HHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCcc
Confidence 3688999996 4 455556665 678999999998877665432211100 233333433333322 458999977655
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
.. ..+++.+...|++|..++-.. ............+...+..+...
T Consensus 105 ~~--~~~l~~~~~~L~~gG~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 105 TA--PGVFAAAWKRLPVGGRLVANA-VTVESEQMLWALRKQFGGTISSF 150 (178)
T ss_dssp TC--TTHHHHHHHTCCTTCEEEEEE-CSHHHHHHHHHHHHHHCCEEEEE
T ss_pred cH--HHHHHHHHHhcCCCCEEEEEe-eccccHHHHHHHHHHcCCeeEEE
Confidence 42 567788888888876665332 33345555666667666555443
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=94.34 E-value=0.17 Score=52.76 Aligned_cols=114 Identities=14% Similarity=0.169 Sum_probs=76.5
Q ss_pred CcEEEEcccH----------HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh----------cccCCCCeeeeCCHHHH
Q 010702 7 SRIGLAGLAV----------MGQNLALNVAEKGFPISVYNRTTSKVDETLDRA----------HREGQLPLTGHYTPRDF 66 (503)
Q Consensus 7 ~~IgIIGlG~----------mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~----------~~~g~~~i~~~~s~~e~ 66 (503)
++|+|+|+.. -...++..|.+.|.+|.+||..-...+ +.... ... ++..+.++.++
T Consensus 330 ~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 405 (467)
T 2q3e_A 330 KKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQ-IVVDLSHPGVSEDDQVSR---LVTISKDPYEA 405 (467)
T ss_dssp CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHH-HHHHHCC------CHHHH---HEEECSSHHHH
T ss_pred CEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHH-HhhhhccccccccccccC---ceeecCCHHHH
Confidence 5799999975 778899999999999999998632211 11110 000 14556788888
Q ss_pred HhccCCCcEEEEecCCChhHHHH-HHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc
Q 010702 67 VLSIQRPRSVIILVKAGSPVDQT-IAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG 132 (503)
Q Consensus 67 ~~~l~~~dvIil~vp~~~~v~~v-l~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p 132 (503)
++. +|.|++++... +.+.. .+.+...+....+|+|+-+..... .+.+...|+.|.+.+
T Consensus 406 ~~~---ad~~vi~t~~~-~f~~~~~~~~~~~~~~~~~i~D~r~~~~~~----~~~~~~~g~~~~~ig 464 (467)
T 2q3e_A 406 CDG---AHAVVICTEWD-MFKELDYERIHKKMLKPAFIFDGRRVLDGL----HNELQTIGFQIETIG 464 (467)
T ss_dssp HTT---CSEEEECSCCG-GGGGSCHHHHHHHSCSSCEEEESSCTTTTC----HHHHHHHTCEEEETT
T ss_pred HhC---CcEEEEecCCh-hhhcCCHHHHHHhcCCCCEEEeCCCcCCch----HHHHHhcCcEEEEeC
Confidence 776 99999999885 44332 345555565556699999887431 123455688887654
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.033 Score=56.74 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=32.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
.++|.|||.|..|..+|..|+++|++|.++++++.
T Consensus 23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~ 57 (407)
T 3rp8_A 23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE 57 (407)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 35799999999999999999999999999999864
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.13 Score=49.31 Aligned_cols=86 Identities=13% Similarity=0.172 Sum_probs=53.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~~ 84 (503)
+|-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+..... .. .. .++.++ =+.+..
T Consensus 8 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------~~-----~~---~~~~~~~~D~~~~~ 71 (278)
T 1spx_A 8 VAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAA--------GV-----SE---QNVNSVVADVTTDA 71 (278)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--------TC-----CG---GGEEEEECCTTSHH
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------cc-----CC---CceeEEecccCCHH
Confidence 455555 699999999999999999999999988776654431000 00 00 122222 233444
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++.+.....+=+++|++...
T Consensus 72 ~~~~~~~~~~~~~g~id~lv~~Ag~ 96 (278)
T 1spx_A 72 GQDEILSTTLGKFGKLDILVNNAGA 96 (278)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC-
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666666666554445788887654
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.041 Score=53.01 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=33.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK 41 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 41 (503)
+|+|.|.|+|.+|+.++..|++.|++|.+.+|+++.
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~ 38 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP 38 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 368999999999999999999999999999998765
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.27 Score=46.79 Aligned_cols=85 Identities=11% Similarity=0.101 Sum_probs=55.8
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~~ 84 (503)
.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... +.... .++.++. +.+..
T Consensus 10 ~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~--------------~~~~~---~~~~~~~~Dv~~~~ 72 (265)
T 3lf2_A 10 VAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALR--------------QRFPG---ARLFASVCDVLDAL 72 (265)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------HHSTT---CCEEEEECCTTCHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------HhcCC---ceEEEEeCCCCCHH
Confidence 344555 6899999999999999999999999988766554311 00000 2233332 34445
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++.+.....+=+++|++...
T Consensus 73 ~v~~~~~~~~~~~g~id~lvnnAg~ 97 (265)
T 3lf2_A 73 QVRAFAEACERTLGCASILVNNAGQ 97 (265)
T ss_dssp HHHHHHHHHHHHHCSCSEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 6777777776655555788887654
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.15 Score=52.12 Aligned_cols=44 Identities=7% Similarity=0.083 Sum_probs=37.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH 50 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~ 50 (503)
.+|.|+|+|.+|...++.+...|. +|.+.++++++.+.+.+.|.
T Consensus 215 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa 259 (404)
T 3ip1_A 215 DNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGA 259 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 469999999999999988889999 89999999998887766553
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.031 Score=57.68 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=31.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
|+++|.|||.|..|..+|..|+++|++|+++++.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 44579999999999999999999999999999875
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.23 Score=47.17 Aligned_cols=82 Identities=11% Similarity=0.136 Sum_probs=53.9
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
+|-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.+... . . ..++..=+.+...+
T Consensus 14 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------~------~---~~~~~~D~~d~~~v 73 (263)
T 3ak4_A 14 KAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE-----------N------G---GFAVEVDVTKRASV 73 (263)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCT-----------T------C---CEEEECCTTCHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh-----------c------C---CeEEEEeCCCHHHH
Confidence 466666 5899999999999999999999999887665543210 0 1 22222223444556
Q ss_pred HHHHHHHHhcCCCCCEEEecCCC
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.+++++.....+=++||++...
T Consensus 74 ~~~~~~~~~~~g~iD~lv~~Ag~ 96 (263)
T 3ak4_A 74 DAAMQKAIDALGGFDLLCANAGV 96 (263)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 66666665544445778877653
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.14 Score=50.51 Aligned_cols=85 Identities=11% Similarity=0.165 Sum_probs=56.9
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~~ 84 (503)
+|-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... .-.. .++.++. +.+..
T Consensus 10 ~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~--------------~~~~---~~~~~~~~Dl~~~~ 72 (319)
T 3ioy_A 10 TAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEA--------------EGSG---PEVMGVQLDVASRE 72 (319)
T ss_dssp EEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------------HTCG---GGEEEEECCTTCHH
T ss_pred EEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--------------cCCC---CeEEEEECCCCCHH
Confidence 466776 59999999999999999999999999887766543210 0000 1333332 34445
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++.+++.+.....+=++||++...
T Consensus 73 ~v~~~~~~~~~~~g~id~lv~nAg~ 97 (319)
T 3ioy_A 73 GFKMAADEVEARFGPVSILCNNAGV 97 (319)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCc
Confidence 6777777776655455778877653
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.16 Score=48.76 Aligned_cols=85 Identities=9% Similarity=0.130 Sum_probs=53.3
Q ss_pred CcEEEEcc---cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGL---AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGl---G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
++|-|.|. |.+|..+|+.|++.|++|.+.+|+++ .++..+. +.+......++..=+.+.
T Consensus 7 k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~-----------------l~~~~~~~~~~~~D~~~~ 68 (275)
T 2pd4_A 7 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRP-----------------IAQELNSPYVYELDVSKE 68 (275)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHH-----------------HHHHTTCCCEEECCTTCH
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHH-----------------HHHhcCCcEEEEcCCCCH
Confidence 45777786 69999999999999999999999975 2211111 001000122333334444
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++.+++++.....+=+++|++...
T Consensus 69 ~~v~~~~~~~~~~~g~id~lv~nAg~ 94 (275)
T 2pd4_A 69 EHFKSLYNSVKKDLGSLDFIVHSVAF 94 (275)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 56777777776655445778887654
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.17 Score=53.20 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=67.1
Q ss_pred CCcEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeee--CCHHHHHhccCCCcEEEEe--
Q 010702 6 LSRIGLAGLAVMGQN-LALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGH--YTPRDFVLSIQRPRSVIIL-- 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~--~s~~e~~~~l~~~dvIil~-- 79 (503)
.++|.|||+|..|.+ +|+.|.+.|++|+++|..... .+.+.+.+ +... .+.+. +. .+|.||..
T Consensus 19 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~g-------i~~~~g~~~~~-~~---~a~~vv~s~~ 87 (491)
T 2f00_A 19 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLG-------ATIYFNHRPEN-VR---DASVVVVSSA 87 (491)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTT-------CEEESSCCGGG-GT---TCSEEEECTT
T ss_pred CCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHCC-------CEEECCCCHHH-cC---CCCEEEECCC
Confidence 357999999999997 999999999999999986543 34444433 2222 23322 23 48888875
Q ss_pred cCCC-hhHHHH----------HHHHHhcCCC-CCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 80 VKAG-SPVDQT----------IAALSEHMSP-GDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 80 vp~~-~~v~~v----------l~~l~~~l~~-g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
+|.+ ..+... .+.+...+.. ..|-|..||+.-.++.-+...|+..|.
T Consensus 88 i~~~~p~~~~a~~~~ipvl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~ 146 (491)
T 2f00_A 88 ISADNPEIVAAHEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGL 146 (491)
T ss_dssp CCTTCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHcCCcEEEHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 3322 112211 1222222222 245566777776666667777877774
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.088 Score=53.01 Aligned_cols=125 Identities=9% Similarity=0.070 Sum_probs=67.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
..+|.|||+|..|+.+|.+|+..|. +++++|.+.-....+..+... ....+-..+....+.+..+ .+++-+...+..
T Consensus 118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~~~~~~ 196 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKR-NSEISVSEIALN 196 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEEECC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHH-CCCCeEEEeecc
Confidence 3589999999999999999999997 699999875332222211100 0000000011122222211 144445444332
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
-.-+. .+.. +..-++|||++-.....-..+.+.+...++-++.+.+.|
T Consensus 197 i~~~~---~~~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~~~~g 244 (353)
T 3h5n_A 197 INDYT---DLHK-VPEADIWVVSADHPFNLINWVNKYCVRANQPYINAGYVN 244 (353)
T ss_dssp CCSGG---GGGG-SCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEEEEET
T ss_pred cCchh---hhhH-hccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 10010 1223 566789999765433233345566677788787765443
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.21 Score=47.27 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=54.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.. -.. ..++..=+.+...
T Consensus 6 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------------~~~---~~~~~~D~~~~~~ 65 (254)
T 1hdc_A 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----------------GDA---ARYQHLDVTIEED 65 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----------------GGG---EEEEECCTTCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----------------CCc---eeEEEecCCCHHH
Confidence 3566776 599999999999999999999999988766654321 001 1122222334445
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++.....+=+++|++...
T Consensus 66 ~~~~~~~~~~~~g~iD~lv~nAg~ 89 (254)
T 1hdc_A 66 WQRVVAYAREEFGSVDGLVNNAGI 89 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666666554445778876654
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=94.22 E-value=0.14 Score=54.88 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=30.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT 39 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 39 (503)
..+|.|||+|..|+.+|.+|+..|. +++++|.+.
T Consensus 326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~ 360 (615)
T 4gsl_A 326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT 360 (615)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 3589999999999999999999997 689999876
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.18 Score=48.14 Aligned_cols=83 Identities=12% Similarity=0.139 Sum_probs=56.2
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCChh
Q 010702 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAGSP 85 (503)
Q Consensus 9 IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~~~ 85 (503)
+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.. .+.. . .++.++ =+.+...
T Consensus 23 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l--------------~~~~-~---~~~~~~~~Dv~~~~~ 84 (266)
T 4egf_A 23 ALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRAL--------------GEQF-G---TDVHTVAIDLAEPDA 84 (266)
T ss_dssp EEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--------------HHHH-C---CCEEEEECCTTSTTH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH--------------HHhc-C---CcEEEEEecCCCHHH
Confidence 44445 689999999999999999999999998877655431 1100 1 233332 3455567
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.+++++.....+=+++|++...
T Consensus 85 v~~~~~~~~~~~g~id~lv~nAg~ 108 (266)
T 4egf_A 85 PAELARRAAEAFGGLDVLVNNAGI 108 (266)
T ss_dssp HHHHHHHHHHHHTSCSEEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 788887777665555788877654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 503 | ||||
| d2pgda1 | 297 | a.100.1.1 (A:177-473) 6-phosphogluconate dehydroge | 1e-132 | |
| d1pgja1 | 300 | a.100.1.1 (A:179-478) 6-phosphogluconate dehydroge | 1e-121 | |
| d2pgda2 | 176 | c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase | 1e-32 | |
| d1pgja2 | 178 | c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase | 3e-31 | |
| d3cuma2 | 162 | c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase | 2e-22 | |
| d1vpda2 | 161 | c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase | 2e-21 | |
| d2cvza2 | 156 | c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase | 3e-13 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 2e-09 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 9e-06 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 3e-05 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 0.002 |
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 297 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 384 bits (987), Expect = e-132
Identities = 158/300 (52%), Positives = 202/300 (67%), Gaps = 8/300 (2%)
Query: 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITA 241
G+G+FVKMVHNGIEYGDMQLI EAY ++K V GL + E+A+ F+EWNK EL+SFL+EITA
Sbjct: 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITA 60
Query: 242 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEE 301
I K +D G+ L+ KI D G KGTGKWT A E V I ++ R LS LK+E
Sbjct: 61 SILKFQDADGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDE 119
Query: 302 REKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKG 361
R +A+K QN+ DKK ++D+R+ALYASKI SYAQG LLR + E G
Sbjct: 120 RIQASK------KLKGPQNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFG 173
Query: 362 WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVV 421
W LN+G +A +W+GGCIIR+VFL +IK A+ RNP L +L++D F + Q +WRR +
Sbjct: 174 WTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAI 233
Query: 422 GLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSF-HTEWT 480
+ AGI P +LS++D YR A LPANL+QAQRD FGAHTYE + +PG F HT WT
Sbjct: 234 STGVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWT 293
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Score = 355 bits (913), Expect = e-121
Identities = 89/304 (29%), Positives = 155/304 (50%), Gaps = 8/304 (2%)
Query: 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEW-NKGELESFLVEIT 240
G+G+ VKM HN EY +Q+ E +D+L+ +G L+N E+A + ++W +K L+S++++I+
Sbjct: 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDIS 59
Query: 241 ADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKE 300
+ KD+ G L + ++D+ G KGTG W+ Q+A E+ V AP++ ++ R + K
Sbjct: 60 IAAARAKDKDG-SYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKT 118
Query: 301 EREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 360
ER+ A + + I + ++ + I YAQ LR
Sbjct: 119 ERQANASNAPGI-TQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVH 177
Query: 361 GWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420
+ LN ++ GCI++ L + +A+++NPN+++ + F E+ +R +
Sbjct: 178 NFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISN--LMCAFQTEIRAGLQNYRDM 235
Query: 421 VGL-AISAGISTPGMCASLSYFDTYRRARLP-ANLVQAQRDLFGAHTYERIDRPGSFHTE 478
V L +S P + ASL+Y L LV QRD+FG H YER+D+ G +
Sbjct: 236 VALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQ 295
Query: 479 WTKL 482
W +L
Sbjct: 296 WPEL 299
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 120 bits (302), Expect = 1e-32
Identities = 84/177 (47%), Positives = 117/177 (66%), Gaps = 3/177 (1%)
Query: 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPR 64
A + I L GLAVMGQNL LN+ + GF + +NRT SKVD+ L A+ + G ++
Sbjct: 1 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVLGAHSLE 58
Query: 65 DFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
+ V +++PR +I+LVKAG VD I L + GD IIDGGN Y +T RR + K
Sbjct: 59 EMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDK 118
Query: 125 GLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGE 180
G+L++G GVSGGE+GAR+GPSLMPGG+ EA+ +I+ I Q +AA+V G PC ++G+
Sbjct: 119 GILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGD 175
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Score = 116 bits (291), Expect = 3e-31
Identities = 79/176 (44%), Positives = 107/176 (60%), Gaps = 2/176 (1%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR-AHREGQLPLTGHYTPRDF 66
+G+ GL VMG NLALN+AEKGF ++V+NRT SK +E + A L T F
Sbjct: 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAF 62
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
S+++PR +ILV+AG+ D TI L + GD ++D GN + + RR + GL
Sbjct: 63 AASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGL 122
Query: 127 LYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEG 181
+LGMG+SGGEEGAR GP+ PGG+ + IR I++ AA+ DDG PCVT G G
Sbjct: 123 RFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG 178
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 91.9 bits (227), Expect = 2e-22
Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 8/164 (4%)
Query: 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDF 66
+I GL MG +A N+ + G+ ++V++ S VD + + RD
Sbjct: 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASA-------ARSARDA 54
Query: 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126
V S++ + + L H++PG +++ + + A ++GL
Sbjct: 55 VQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGL 114
Query: 127 LYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQV 169
L VSGG GA G + M GG EA R + + + +
Sbjct: 115 AMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNI 158
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 89.1 bits (220), Expect = 2e-21
Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 14/166 (8%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++G GL +MG+ ++ N+ + G+ + V +R + G T
Sbjct: 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN----------PEAIADVIAAGAETASTAK 51
Query: 68 LSIQRPRSVIILVKAGSPVDQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124
++ +I ++ V + + E PG +ID + L + K
Sbjct: 52 AIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAK 111
Query: 125 GLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQV 169
G+ L VSGGE A G S+M GG ++ D+++ +A V
Sbjct: 112 GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV 157
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 65.3 bits (158), Expect = 3e-13
Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 13/167 (7%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
++ GL MG +A ++A + FP V+NRT K + G + V
Sbjct: 2 KVAFIGLGAMGYPMAGHLA-RRFPTLVWNRTFEKALRHQEEF---GSEAVPLERVAEARV 57
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
+ P + + + AL ++ G +D + + R +KG+
Sbjct: 58 IFTCLPTTREV--------YEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVT 109
Query: 128 YLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGP 173
YL VSGG GA G ++M GG EA +R L V GP
Sbjct: 110 YLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLAYAKKVVHVGP 156
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 53.7 bits (128), Expect = 2e-09
Identities = 21/173 (12%), Positives = 43/173 (24%), Gaps = 24/173 (13%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
R+G G + Q LA + +G + S R + Y+ +
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
++ ++ +AG +D N T R +
Sbjct: 62 SAVTPGVALGAARRAG-------------RHVRGIYVDINNISP-ETVRMASSL-IEKGG 106
Query: 128 YLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180
++ + G ++ G L + G + G
Sbjct: 107 FVDAAIMGSVRRKGADIRIIASGRDAEE---FMKLNRY------GLNIEVRGR 150
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 43.6 bits (101), Expect = 9e-06
Identities = 19/170 (11%), Positives = 53/170 (31%), Gaps = 17/170 (10%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFV 67
+IG+ GL ++G +LA ++ +G + +R S ++ ++R +
Sbjct: 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQL---------VDEAGQDL 52
Query: 68 LSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127
+Q + + + + + + + + G
Sbjct: 53 SLLQTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGH 112
Query: 128 YLGMGVSGGEEGARHGP--------SLMPGGSFEAYNNIRDILQKVAAQV 169
+ + G +GA + E +R +L+ + ++
Sbjct: 113 PMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKI 162
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 41.9 bits (97), Expect = 3e-05
Identities = 11/162 (6%), Positives = 38/162 (23%), Gaps = 18/162 (11%)
Query: 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL 68
+ G + + + ++ + +R+ + + Y + L
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAE------------VYGGKAATL 49
Query: 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128
+ ++ V +T+A G + +
Sbjct: 50 EKHPELNGVVFVIVPDRYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIH-----P 104
Query: 129 LGMGVSGGEEGARH-GPSLMPGGSFEAYNNIRDILQKVAAQV 169
S + G ++ I ++++ +
Sbjct: 105 NFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKY 146
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 37.2 bits (85), Expect = 0.002
Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 9/145 (6%)
Query: 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-----REGQLPLTGHYT 62
+ GL G A +A KG + ++ ++ E DR
Sbjct: 3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLL 62
Query: 63 PRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIID--GGNEWYLNTERRIHE 120
D L+++ ++I+V A A ++ ++S G II G L + + E
Sbjct: 63 TSDIGLAVKDADVILIVVPAIH-HASIAANIASYISEGQLIILNPGATGGALEFRKILRE 121
Query: 121 ASQKGLLYLGMGVSGGEEGARHGPS 145
+ +G S P
Sbjct: 122 NGAPEVT-IGETSSMLFTCRSERPG 145
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 503 | |||
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 100.0 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 100.0 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.97 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.97 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.97 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.95 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.93 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 99.88 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 99.88 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.85 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.82 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.74 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.74 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.72 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.59 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.53 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.51 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.5 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.49 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.44 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.43 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.41 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.41 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.4 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.38 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.33 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 99.14 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.11 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.89 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.85 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.85 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.8 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.77 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.76 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.7 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.69 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.66 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.6 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.55 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.51 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.49 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.33 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.31 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.3 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.19 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.16 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.15 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.13 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.1 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.07 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.04 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 98.03 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.01 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 98.0 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.98 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.97 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.91 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.89 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.84 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.8 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.8 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.78 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.73 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.72 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.71 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.69 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.67 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 97.67 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.64 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.61 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.61 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.54 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.54 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.53 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.53 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 97.53 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.47 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.41 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.38 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.29 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.28 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.28 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 97.26 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.26 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.21 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 97.18 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.18 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.15 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 97.09 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.09 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.03 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 97.02 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.0 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 97.0 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.99 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.99 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.96 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.95 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.95 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.93 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.9 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 96.89 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 96.88 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.86 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.83 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.82 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.78 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 96.76 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.73 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.7 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.63 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.58 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.57 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.41 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.41 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.31 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 96.22 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.22 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.19 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 96.18 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.17 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 96.12 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 96.12 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.12 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 96.0 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.99 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 95.99 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.91 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 95.91 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 95.9 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.85 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.84 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 95.8 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 95.75 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 95.75 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 95.74 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.73 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.72 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 95.7 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.69 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 95.68 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.68 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.63 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 95.61 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 95.6 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 95.59 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 95.59 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 95.57 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 95.56 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.54 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.51 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.49 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 95.48 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 95.47 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.47 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 95.46 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 95.38 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 95.28 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 95.25 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.25 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 95.25 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 95.23 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 95.14 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 95.1 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.09 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 95.09 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 95.06 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 95.04 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.03 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 95.02 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 95.02 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 95.0 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.97 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 94.94 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 94.9 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 94.88 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.86 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 94.83 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 94.75 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 94.71 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 94.64 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 94.63 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 94.62 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 94.62 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.6 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 94.59 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 94.57 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 94.54 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 94.45 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.44 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 94.42 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 94.42 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.36 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.31 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.28 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.27 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 94.26 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 94.24 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 94.21 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 94.19 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 94.17 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.16 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 94.02 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 94.02 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.01 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 94.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 93.99 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 93.98 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.97 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 93.93 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 93.9 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 93.9 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 93.88 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 93.86 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 93.84 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 93.83 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 93.82 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 93.81 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 93.8 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 93.79 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 93.78 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 93.75 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 93.71 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 93.69 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 93.54 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 93.51 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 93.38 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.25 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 93.18 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.18 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.1 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 93.08 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 93.07 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 92.94 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 92.55 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 92.54 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 92.48 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 92.35 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 92.34 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 92.27 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 92.26 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 92.25 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 92.18 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.13 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 92.11 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 92.02 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 91.99 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 91.99 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 91.71 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 91.71 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 91.54 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 91.46 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 91.39 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.35 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 91.17 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 91.1 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 91.07 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 90.91 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 90.87 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.84 | |
| d1n1ea1 | 160 | Glycerol-3-phosphate dehydrogenase {Trypanosome (L | 90.73 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 90.54 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 90.5 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 90.5 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 90.49 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 90.29 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 90.1 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 90.08 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 89.89 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 89.65 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 89.36 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.25 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 89.18 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 89.09 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 89.05 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 88.71 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 88.57 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 88.47 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 88.4 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 87.91 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 87.67 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 87.65 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 87.61 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 87.53 | |
| d1ycga1 | 149 | Nitric oxide reductase C-terminal domain {Moorella | 87.4 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 86.76 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 86.71 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 86.48 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 86.43 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 86.39 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 86.38 | |
| d1txga1 | 155 | Glycerol-3-phosphate dehydrogenase {Archaeoglobus | 86.14 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 86.05 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 85.81 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 85.79 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 85.59 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 85.42 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 85.3 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 85.28 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 85.01 | |
| d1ks9a1 | 124 | Ketopantoate reductase PanE {Escherichia coli [Tax | 84.69 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 84.64 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 84.49 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 84.28 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 84.07 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 83.88 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 83.87 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 83.64 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 83.49 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 83.49 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 83.43 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 83.29 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 82.8 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 82.7 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 82.63 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 82.6 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 82.51 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 82.34 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 82.11 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 81.99 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 81.24 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 81.11 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 81.01 | |
| d1vmea1 | 148 | ROO-like flavoprotein TM0755, C-terminal domain {T | 80.98 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 80.97 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 80.63 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 80.49 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 80.36 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 80.34 |
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=100.00 E-value=5.2e-81 Score=614.21 Aligned_cols=295 Identities=53% Similarity=0.898 Sum_probs=278.9
Q ss_pred chhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHh
Q 010702 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILD 261 (503)
Q Consensus 182 G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~ 261 (503)
|+|||||||||+|||++||+++|+|.++++..|++++++.++|..|+.+.++|||++++.++++.+++ ...+.+|.|.|
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~il~~kd~-~~~~~ld~I~d 79 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDA-DGKHLLPKIRD 79 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCT-TSSBSGGGSCC
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCC-CcCcchhhhhc
Confidence 79999999999999999999999999999864499999999999999999999999999999987663 34579999999
Q ss_pred hcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccchhhHHHHHHHHHHHH
Q 010702 262 KTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYAS 341 (503)
Q Consensus 262 ~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~v~~ai~~~ 341 (503)
.++|||||+|++++|.++|||+|+|.+||++|++|+.+++|..+++.++++... ....+...|+++||||+++|
T Consensus 80 ~a~~kGTG~Wt~~~Al~lgvp~p~I~~Av~aR~~S~~k~~R~~~~~~~~~~~~~------~~~~~~~~~i~~l~~al~~~ 153 (297)
T d2pgda1 80 SAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNI------PFEGDKKSFLEDIRKALYAS 153 (297)
T ss_dssp CCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC------CCCSCHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHcCCCchHHHHHHhhHhhcccHHHHHHhhhcccCcccC------CCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999776432 23446788999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhhHhHHHHhhhhHHHHHH
Q 010702 342 KICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVV 421 (503)
Q Consensus 342 ~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~r~~v 421 (503)
+|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.+.++|+++|++.|+++++.|.+.+.+..++|||+|
T Consensus 154 ~i~syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~a~~~~~~l~nl~~~~~~~~~l~~~~~~~r~~v 233 (297)
T d2pgda1 154 KIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAI 233 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHHHHHhCCCccchhhcHHHHHHHhhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhccCCcchhHHHhhhhhcCCccccccCCCCcc-cccccCCC
Q 010702 422 GLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSF-HTEWTKLP 483 (503)
Q Consensus 422 ~~a~~~gvp~P~~saal~y~~~~~~~~~~~~~iqa~rd~fG~H~~~r~d~~~~~-h~~w~~~~ 483 (503)
..|++.|||+|++++||+||++++++++|+|+|||||||||+|||+|+|++|.| |++|+..+
T Consensus 234 ~~ai~~gip~P~lssaL~y~~~~~~~~lp~~lIQAqRD~FG~H~~~r~d~~G~f~H~~W~~~~ 296 (297)
T d2pgda1 234 STGVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHG 296 (297)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHCSSCTHHHHHHHHHHHHCCCBCCSSSTTCCBCCCCSCSC
T ss_pred HHHHHcCCChHHHHHHHHHHHHhccCCchhHHHHHHHHHhcCCCeeecCCCCCcccCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999975 99998643
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=2.6e-78 Score=597.19 Aligned_cols=295 Identities=29% Similarity=0.540 Sum_probs=265.6
Q ss_pred chhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcc-CCcchhHHhhhhhhccccccCCCchhHHHHH
Q 010702 182 GSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNK-GELESFLVEITADIFKVKDEYGEGELVDKIL 260 (503)
Q Consensus 182 G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~-g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~ 260 (503)
|+|||||||||+|||++||+++|+|.+++..+ ++++++.++|..|+. +.++|||++++.++++++++ .+.+++|.|.
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~~-~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~-~g~~l~d~I~ 78 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDK-DGSYLTEHVM 78 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCT-TSSBGGGGBC
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCC-CCchhHHHhc
Confidence 79999999999999999999999999999876 999999999999965 57899999999999987664 4568999999
Q ss_pred hhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccCCCcccccccccccchhhHHHHHHHHHHH
Q 010702 261 DKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYA 340 (503)
Q Consensus 261 ~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~v~~ai~~ 340 (503)
|.++|||||+|++++|.++|+|+|++.+||++|++|+.|++|..+++.++++...... ....+...++|+++|||||||
T Consensus 79 d~a~~kGTG~Wt~~~al~~gvp~p~i~~Av~aR~~S~~k~~R~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~Al~~ 157 (300)
T d1pgja1 79 DRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGITQSPGY-TLKNKSPSGPEIKQLYDSVCI 157 (300)
T ss_dssp CCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHSTTTTCCCCC-CCSCCSTTSHHHHHHHHHHHH
T ss_pred ccccCCchHHHHHHHHHHcCCCccHHHHHHHHHHHhCChHHHHHHHhhcccccCCccc-ccccchhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999866431100 001123568899999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhhHhHHHHhhhhHHHHH
Q 010702 341 SKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRV 420 (503)
Q Consensus 341 ~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~r~~ 420 (503)
|+|++|+|||+||++++++|+|++|+.+|+++||+||||||.||+.|.++|+++|++.+++. .|...+.+....++++
T Consensus 158 ~~i~syaQGf~LL~~as~~~~w~ldl~~Ia~iWr~GCIIRS~LL~~i~~a~~~~~~l~~l~~--~f~~~~~~~~~~~~r~ 235 (300)
T d1pgja1 158 AIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMC--AFQTEIRAGLQNYRDM 235 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHHHHHHHCTTCSCTTG--GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCccchHHHHHhcCCceeeHHHHHHHHHHhhcCCccchhhH--HHHHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888775 3666666666666555
Q ss_pred H-HHHHHcCCChHHHHHHHHHHHhhccCCcc-hhHHHhhhhhcCCccccccCCCCcccccccC
Q 010702 421 V-GLAISAGISTPGMCASLSYFDTYRRARLP-ANLVQAQRDLFGAHTYERIDRPGSFHTEWTK 481 (503)
Q Consensus 421 v-~~a~~~gvp~P~~saal~y~~~~~~~~~~-~~~iqa~rd~fG~H~~~r~d~~~~~h~~w~~ 481 (503)
| ..+++.|||+|++++||+||++++++++| +|||||||||||+|||+|+|++|.||++|++
T Consensus 236 v~~~~~~~gip~P~lssaL~y~~~~~~~~l~~anLIQAqRD~FGaH~~~r~d~~g~~H~~W~~ 298 (300)
T d1pgja1 236 VALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQWPE 298 (300)
T ss_dssp HHHHHHHCCCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHHCCCEEBSSSSSEECCCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCCchhHHHHHHHhhcCCCCeeeCCCCCCcCCCCCC
Confidence 5 56789999999999999999999999999 6999999999999999999999999999976
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=2.4e-31 Score=240.36 Aligned_cols=157 Identities=23% Similarity=0.390 Sum_probs=148.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|||||||+|.||.+||++|+++||+|++|||++++.+++.+.+ ...+.++.|++++ +|+||+|||++.++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~-------~~~~~~~~e~~~~---~d~ii~~v~~~~~v 70 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAG-------AETASTAKAIAEQ---CDVIITMLPNSPHV 70 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhh-------hhhcccHHHHHhC---CCeEEEEcCCHHHH
Confidence 6899999999999999999999999999999999999998764 4678999999998 99999999999999
Q ss_pred HHHH---HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHH
Q 010702 87 DQTI---AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDIL 162 (503)
Q Consensus 87 ~~vl---~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll 162 (503)
++++ +.+.+.+.+|++|||+||+.|..++++.+.++++|++|+++|++|++.+++.|+ ++|+||+++++++++++|
T Consensus 71 ~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il 150 (161)
T d1vpda2 71 KEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLM 150 (161)
T ss_dssp HHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHH
Confidence 9998 568888999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhcccCCCCcEEEeC
Q 010702 163 QKVAAQVDDGPCVTYIG 179 (503)
Q Consensus 163 ~~ig~~~~~~~~v~~~G 179 (503)
+.++ ++++|+|
T Consensus 151 ~~~~------~~i~~~G 161 (161)
T d1vpda2 151 KAMA------GSVVHTG 161 (161)
T ss_dssp HTTE------EEEEEEE
T ss_pred HHhc------CceEECC
Confidence 9999 7899986
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.97 E-value=9.5e-31 Score=239.90 Aligned_cols=172 Identities=47% Similarity=0.812 Sum_probs=157.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
.+|||||+|.||.+||++|+++||+|++|||++++++++.+.+.... ....+.+.+++++.+..+|.+++++|++.++
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v 80 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGT--KVLGAHSLEEMVSKLKKPRRIILLVKAGQAV 80 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTS--SCEECSSHHHHHHHBCSSCEEEECSCTTHHH
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccc--cccchhhhhhhhhhhcccceEEEecCchHHH
Confidence 58999999999999999999999999999999999999988754321 3456778888877777799999999999999
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHHh
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVA 166 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~ig 166 (503)
.++.+++.+.+.+|++|||+||..|.+++++.+.+.++|++|+++|++||+.+++.|.++|+||+++++++++|+|+.++
T Consensus 81 ~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~~~~~gG~~~~~~~~~~il~~~~ 160 (176)
T d2pgda2 81 DNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIA 160 (176)
T ss_dssp HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHHS
T ss_pred HHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCcEEEcCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-CCCCcEEEeCC
Q 010702 167 AQV-DDGPCVTYIGE 180 (503)
Q Consensus 167 ~~~-~~~~~v~~~G~ 180 (503)
.++ .+++|+.|+|+
T Consensus 161 ~kv~~g~~c~~~~G~ 175 (176)
T d2pgda2 161 AKVGTGEPCCDWVGD 175 (176)
T ss_dssp CBCTTSCBSCCCCEE
T ss_pred cccCCCCcCceeeCC
Confidence 887 56788889986
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=3.2e-30 Score=233.16 Aligned_cols=158 Identities=26% Similarity=0.423 Sum_probs=147.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+||||||+|.||.+||++|+++||+|.+|||++++.+.+...+ .....++.+++.. +|+|++|||++.+
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~-------~~~~~~~~e~~~~---~diii~~v~~~~~ 70 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAG-------ASAARSARDAVQG---ADVVISMLPASQH 70 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT-------CEECSSHHHHHTS---CSEEEECCSCHHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhh-------ccccchhhhhccc---cCeeeecccchhh
Confidence 46899999999999999999999999999999999999888764 4567899999988 9999999999988
Q ss_pred HHHHHH---HHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHH
Q 010702 86 VDQTIA---ALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDI 161 (503)
Q Consensus 86 v~~vl~---~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~l 161 (503)
++.++. ++.+.+.+|++|||+||+.|..+.++.+.++++|++|+++|++||+++++.|+ ++|+||+++++++++++
T Consensus 71 ~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~i 150 (162)
T d3cuma2 71 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPL 150 (162)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecCCHHHHHHHHHH
Confidence 888874 47788999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhcccCCCCcEEEeC
Q 010702 162 LQKVAAQVDDGPCVTYIG 179 (503)
Q Consensus 162 l~~ig~~~~~~~~v~~~G 179 (503)
|+.++ +.++|+|
T Consensus 151 l~~~~------~~v~~~G 162 (162)
T d3cuma2 151 FEAMG------RNIFHAG 162 (162)
T ss_dssp HHHHE------EEEEEEE
T ss_pred HHHHc------CccEECc
Confidence 99999 7899986
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.95 E-value=2.5e-28 Score=223.93 Aligned_cols=176 Identities=42% Similarity=0.724 Sum_probs=155.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCC-CCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ-LPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~-~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|||||||+|.||.+||++|+++||+|.+|||++++.+++.+.+..... -......+.++++..+..++.+++++++...
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 689999999999999999999999999999999999999887643210 0345667888888877889999999999999
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKV 165 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~i 165 (503)
++.++..+...+.++++++|+||..+..+.++.+.+.+++++|+++|++|++.+++.|+++|+||+++++++++|+|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~~~mvgG~~~~~~~v~pil~~~ 161 (178)
T d1pgja2 82 TDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAA 161 (178)
T ss_dssp HHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEECHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCcEEEeeCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCcEEEeCCcchh
Q 010702 166 AAQVDDGPCVTYIGEGGSG 184 (503)
Q Consensus 166 g~~~~~~~~v~~~G~~G~g 184 (503)
+.++.. .-.|+|+.|+|
T Consensus 162 ~~~~~~--~~~~~g~~G~G 178 (178)
T d1pgja2 162 AAKADD--GRPCVTMNGSG 178 (178)
T ss_dssp SCBCTT--SCBSCCCCCST
T ss_pred hccccC--CCCccCCCCCC
Confidence 954311 11288888876
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=5.7e-27 Score=210.24 Aligned_cols=154 Identities=26% Similarity=0.337 Sum_probs=137.7
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHH
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVD 87 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~ 87 (503)
||||||+|.||.+||++|.++|+.| +|||++++..++.+.+. ...... +.+.+ +|++++++|++.++.
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~---~~~~i~~~~~~~~v~ 69 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFG-------SEAVPL-ERVAE---ARVIFTCLPTTREVY 69 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHC-------CEECCG-GGGGG---CSEEEECCSSHHHHH
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcC-------Cccccc-ccccc---eeEEEecccchhhhh
Confidence 7999999999999999999999865 78999998888777642 223344 33444 899999999999999
Q ss_pred HHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHHHHHh
Q 010702 88 QTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVA 166 (503)
Q Consensus 88 ~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll~~ig 166 (503)
.+.+++.+.+.+++++||+||..|..++++.+.++++|++|+|+||+||+.+|++|+ ++|+||+++++++++|+|. ++
T Consensus 70 ~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L~-~~ 148 (156)
T d2cvza2 70 EVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLA-YA 148 (156)
T ss_dssp HHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGCT-TE
T ss_pred hhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHHHH-hc
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999994 88
Q ss_pred cccCCCCcEEEeCC
Q 010702 167 AQVDDGPCVTYIGE 180 (503)
Q Consensus 167 ~~~~~~~~v~~~G~ 180 (503)
.+++|+||
T Consensus 149 ------~~v~~~GP 156 (156)
T d2cvza2 149 ------KKVVHVGP 156 (156)
T ss_dssp ------EEEEEEES
T ss_pred ------CcCEEeCc
Confidence 78999986
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.88 E-value=7.3e-24 Score=206.68 Aligned_cols=120 Identities=5% Similarity=0.068 Sum_probs=101.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhh
Q 010702 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (503)
Q Consensus 326 ~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~ 405 (503)
|+||||||||||||||+||+|+|+|++|+.+.+.++ .++.+|+..|+.| .++||||+++.+++++++...+.++|.+
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~--~~i~~vf~~w~~~-~l~syLleit~~il~~kd~~~~~~ld~I 77 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGH--KEMAKAFEEWNKT-ELDSFLIEITASILKFQDADGKHLLPKI 77 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCH--HHHHHHHHHHTTT-TTCBHHHHHHHHHHHCBCTTSSBSGGGS
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHhCC-CccHHHHHHHHHHHhccCCCcCcchhhh
Confidence 589999999999999999999999999996543222 4566666669999 8999999999999986554456777888
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCcc
Q 010702 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARLP 450 (503)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~~ 450 (503)
.+.+-+++|| +|++++|+++|||+|+|++||+ |+++++.+|..
T Consensus 78 ~d~a~~kGTG--~Wt~~~Al~lgvp~p~I~~Av~aR~~S~~k~~R~~ 122 (297)
T d2pgda1 78 RDSAGQKGTG--KWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQ 122 (297)
T ss_dssp CCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHH
T ss_pred hccccCCCch--HHHHHHHHHcCCCchHHHHHHhhHhhcccHHHHHH
Confidence 8888899999 9999999999999999999999 67777766653
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.88 E-value=9.5e-24 Score=206.58 Aligned_cols=119 Identities=13% Similarity=0.172 Sum_probs=101.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhh
Q 010702 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (503)
Q Consensus 326 ~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~ 405 (503)
|+||||||||||||||+||+++|+|++||.. +... .++.+|++.|++|.+++||||+++.++++++++.+..|+|.+
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~-~~~~--~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~~g~~l~d~I 77 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAM-GLNN--DEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHV 77 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCH--HHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGGB
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHc-CCCH--HHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCCCCchhHHHh
Confidence 5899999999999999999999999999843 2111 256777777977669999999999999987655456888888
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHH--HHHhhccCCc
Q 010702 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLS--YFDTYRRARL 449 (503)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~--y~~~~~~~~~ 449 (503)
.+.+.+++|| +|++++|+++|+|+|+|++||+ ++++++.+|.
T Consensus 78 ~d~a~~kGTG--~Wt~~~al~~gvp~p~i~~Av~aR~~S~~k~~R~ 121 (300)
T d1pgja1 78 MDRIGSKGTG--LWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQ 121 (300)
T ss_dssp CCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHH
T ss_pred cccccCCchH--HHHHHHHHHcCCCccHHHHHHHHHHHhCChHHHH
Confidence 8888899999 9999999999999999999999 7888877764
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.85 E-value=1.7e-21 Score=173.28 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=122.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|||||||+|.||++||++|+++||+|++||+++.+...+...+. ....+++|+++. +|+||+|||++ ..
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~e~~~~---~diIi~~v~~~-~~ 69 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTV-------GVTETSEEDVYS---CPVVISAVTPG-VA 69 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH-------TCEECCHHHHHT---SSEEEECSCGG-GH
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcc-------cccccHHHHHhh---cCeEEEEecCc-hH
Confidence 68999999999999999999999999999998887766665543 346688999988 99999999986 55
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHHHHH
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKV 165 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll~~i 165 (503)
.+++..+.+.+ ++++||+||..|..++++.+.+++. .|+++|++|++..+..++ .++.|++.+.+++ |+.+
T Consensus 70 ~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~~~~~~--~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~~----l~~~ 141 (152)
T d1i36a2 70 LGAARRAGRHV--RGIYVDINNISPETVRMASSLIEKG--GFVDAAIMGSVRRKGADIRIIASGRDAEEFMK----LNRY 141 (152)
T ss_dssp HHHHHHHHTTC--CSEEEECSCCCHHHHHHHHHHCSSS--EEEEEEECSCHHHHGGGCEEEEESTTHHHHHG----GGGG
T ss_pred HHHHHhhcccC--CceeeccCcCCHHHHHHHHHHHhcc--CCCcccccCCcccccCCcEEEEECCCHHHHHH----HHHc
Confidence 66777776654 6899999999999999988877654 499999999999998888 5555666555443 6778
Q ss_pred hcccCCCCcEEEeCC
Q 010702 166 AAQVDDGPCVTYIGE 180 (503)
Q Consensus 166 g~~~~~~~~v~~~G~ 180 (503)
| .++.++|+
T Consensus 142 g------~~i~~~G~ 150 (152)
T d1i36a2 142 G------LNIEVRGR 150 (152)
T ss_dssp T------CEEEECSS
T ss_pred C------CeeeEcCC
Confidence 8 78888886
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.82 E-value=3.4e-20 Score=166.93 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=119.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|||||||+|.||++||++|.++||+|++|||+++..+++.+.+.. ....+..+.+++ +|+||+++|.. .+
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~------~~~~~~~~~~~~---~DiIilavp~~-~~ 70 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLV------DEAGQDLSLLQT---AKIIFLCTPIQ-LI 70 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSC------SEEESCGGGGTT---CSEEEECSCHH-HH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhcc------ceeeeecccccc---cccccccCcHh-hh
Confidence 689999999999999999999999999999999998887776531 122333344555 99999999985 89
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh-cCccEecccCCCChhhhh----cCC-cc---cCCCCHHHHHH
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ-KGLLYLGMGVSGGEEGAR----HGP-SL---MPGGSFEAYNN 157 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~-~gi~~i~~pvsgg~~~a~----~G~-~i---~~gg~~~a~~~ 157 (503)
+++++++.+.+.++.+|+|+++..........+.... .+.|.+..|..+|+..+. .+. .+ +.++++++++.
T Consensus 71 ~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~ 150 (165)
T d2f1ka2 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLAC 150 (165)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHH
T ss_pred hhhhhhhhhhcccccceeeccccchHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHH
Confidence 9999999999999999999999876655544333221 144555566666665443 233 33 34889999999
Q ss_pred HHHHHHHHhcccCCCCcEEEe
Q 010702 158 IRDILQKVAAQVDDGPCVTYI 178 (503)
Q Consensus 158 v~~ll~~ig~~~~~~~~v~~~ 178 (503)
++++|+.+| .++++|
T Consensus 151 v~~l~~~lG------~~v~~c 165 (165)
T d2f1ka2 151 LRSVLEPLG------VKIYLC 165 (165)
T ss_dssp HHHHHGGGT------CEEEEC
T ss_pred HHHHHHHhC------CEEEeC
Confidence 999999999 567664
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=1.3e-19 Score=160.83 Aligned_cols=149 Identities=7% Similarity=-0.037 Sum_probs=112.8
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHHH
Q 010702 9 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQ 88 (503)
Q Consensus 9 IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~ 88 (503)
|||||+|+||++|+.+|.++++.+.+|+|++++.+++.+.+. ..+.+++++++. +|+||+|||++ ++.+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~-------~~~~~~~~~~~~---~DiVil~v~d~-~i~~ 70 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYG-------GKAATLEKHPEL---NGVVFVIVPDR-YIKT 70 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTC-------CCCCSSCCCCC------CEEECSCTT-THHH
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhccc-------ccccchhhhhcc---CcEEEEeccch-hhhH
Confidence 899999999999999997765556799999999999988763 235577777776 99999999985 6777
Q ss_pred HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHHHHHhc
Q 010702 89 TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAA 167 (503)
Q Consensus 89 vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll~~ig~ 167 (503)
+++++. .++.+|||+|+..+....+ .....++|++.++..++...+..+. .++++||+++++.++++|+.+|
T Consensus 71 v~~~l~---~~~~ivi~~s~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG- 143 (153)
T d2i76a2 71 VANHLN---LGDAVLVHCSGFLSSEIFK---KSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEIS- 143 (153)
T ss_dssp HHTTTC---CSSCCEEECCSSSCGGGGC---SSSEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHC-
T ss_pred HHhhhc---ccceeeeecccchhhhhhh---hhccccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHC-
Confidence 765542 4789999999988755432 2334578888888888877776665 7888999999999999999999
Q ss_pred ccCCCCcEEEeCC
Q 010702 168 QVDDGPCVTYIGE 180 (503)
Q Consensus 168 ~~~~~~~v~~~G~ 180 (503)
.+++++++
T Consensus 144 -----~~~~~i~~ 151 (153)
T d2i76a2 144 -----GKYFVIPS 151 (153)
T ss_dssp -----SCEEECCG
T ss_pred -----CcEEEeCC
Confidence 67888764
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.74 E-value=6.4e-18 Score=149.76 Aligned_cols=135 Identities=19% Similarity=0.186 Sum_probs=112.9
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
++||+||| +|.||++||++|.++||+|.+|||++.... ++.++. +|++++++|..
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~--------------------~~~~~~---~~~v~~~~~~~- 64 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVA--------------------ESILAN---ADVVIVSVPIN- 64 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGH--------------------HHHHTT---CSEEEECSCGG-
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccccc--------------------chhhhh---ccccccccchh-
Confidence 56999999 999999999999999999999999865322 233444 89999999985
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChhhhhcCC--cccCCCCHHHHHHHHHH
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP--SLMPGGSFEAYNNIRDI 161 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~~a~~G~--~i~~gg~~~a~~~v~~l 161 (503)
++..++.++.+.+.++.+|+|++|+.+...+++.+.+ ..+|+. .|++|++.+...|. .+++|++++.++++.++
T Consensus 65 ~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~---~~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~~~l 141 (152)
T d2pv7a2 65 LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH---TGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQ 141 (152)
T ss_dssp GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHH
T ss_pred hheeeeecccccccCCceEEEecccCHHHHHHHHHHc---cCCEEEecccCCCcccccCCcEEEEecCCCHHHHHHHHHH
Confidence 7888999999999999999999999988777665533 345765 69999988888887 45568899999999999
Q ss_pred HHHHhc
Q 010702 162 LQKVAA 167 (503)
Q Consensus 162 l~~ig~ 167 (503)
|+.+|+
T Consensus 142 l~~~Ga 147 (152)
T d2pv7a2 142 IQIWGA 147 (152)
T ss_dssp HHHTTC
T ss_pred HHHhCC
Confidence 999994
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.72 E-value=1.1e-16 Score=144.15 Aligned_cols=151 Identities=15% Similarity=0.202 Sum_probs=115.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
|++|+|||+|.||.+||++|.++|+ +|++||++++..+.+.+.+... ....+..+... ..+|+|++|+|.
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~-----~~~~~~~~~~~--~~~dlIila~p~- 72 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIID-----EGTTSIAKVED--FSPDFVMLSSPV- 72 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCS-----EEESCGGGGGG--TCCSEEEECSCH-
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcch-----hhhhhhhhhhc--cccccccccCCc-
Confidence 3579999999999999999999996 6889999999998888765321 34455554332 138999999998
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCC----hhhhh----cCC-cccC---CC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGG----EEGAR----HGP-SLMP---GG 150 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg----~~~a~----~G~-~i~~---gg 150 (503)
..+.++++++.+.+.++++|+|.+++.....+.+.+.+.. +|+. .|+.|. +..+. .|. .+++ +.
T Consensus 73 ~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~---~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~ 149 (171)
T d2g5ca2 73 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKT 149 (171)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSS
T ss_pred hhhhhhhhhhhccccccccccccccccHHHHHHHHHhhcc---cccccccccccccccHHHHHHHhhCCCeEEEecCCCC
Confidence 4789999999999999999999999988777776665544 3554 466664 33332 233 3332 45
Q ss_pred CHHHHHHHHHHHHHHhc
Q 010702 151 SFEAYNNIRDILQKVAA 167 (503)
Q Consensus 151 ~~~a~~~v~~ll~~ig~ 167 (503)
+++.++.++++|+.+|+
T Consensus 150 ~~~~~~~v~~~~~~lG~ 166 (171)
T d2g5ca2 150 DKKRLKLVKRVWEDVGG 166 (171)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 88999999999999994
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.59 E-value=3.7e-15 Score=131.76 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=104.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|||||||+|.||++|+.+|.++|++|.+|+|++++.+++.++. ++..+.+++++++. +|+||+||++ ..+
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~------g~~~~~~~~~~~~~---~dvIilavkp-~~~ 70 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL------ALPYAMSHQDLIDQ---VDLVILGIKP-QLF 70 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH------TCCBCSSHHHHHHT---CSEEEECSCG-GGH
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc------ceeeechhhhhhhc---cceeeeecch-HhH
Confidence 6899999999999999999999999999999999998887653 25677899999998 9999999987 456
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChhhhhcCCc-ccCC--CCHHHHHHHHHHH
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGPS-LMPG--GSFEAYNNIRDIL 162 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~~a~~G~~-i~~g--g~~~a~~~v~~ll 162 (503)
++++ +.+.++++||+..++.. ...+.+.+.. +..++. +|-.+ .....|.+ +..+ .+++..+.++++|
T Consensus 71 ~~vl----~~l~~~~~iis~~agi~--~~~l~~~l~~-~~~ivr~mPN~~--~~v~~g~~~~~~~~~~~~~~~~~v~~l~ 141 (152)
T d2ahra2 71 ETVL----KPLHFKQPIISMAAGIS--LQRLATFVGQ-DLPLLRIMPNMN--AQILQSSTALTGNALVSQELQARVRDLT 141 (152)
T ss_dssp HHHH----TTSCCCSCEEECCTTCC--HHHHHHHHCT-TSCEEEEECCGG--GGGTCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHh----hhcccceeEeccccccc--HHHHHhhhcc-cccchhhccchh--hhcCccceEEEeCCCCCHHHHHHHHHHH
Confidence 6554 55778999998877653 3344454433 344443 34221 11223443 3333 2689999999999
Q ss_pred HHHh
Q 010702 163 QKVA 166 (503)
Q Consensus 163 ~~ig 166 (503)
+.+|
T Consensus 142 ~~~G 145 (152)
T d2ahra2 142 DSFG 145 (152)
T ss_dssp HTTE
T ss_pred HhCC
Confidence 9999
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.53 E-value=3.2e-15 Score=141.04 Aligned_cols=162 Identities=13% Similarity=0.039 Sum_probs=129.9
Q ss_pred CcEEEEcccH--HHHHHHH------HHHhCCCcEEEEeCChhHH-HHHHHhhc---------------ccC---------
Q 010702 7 SRIGLAGLAV--MGQNLAL------NVAEKGFPISVYNRTTSKV-DETLDRAH---------------REG--------- 53 (503)
Q Consensus 7 ~~IgIIGlG~--mG~~lA~------~L~~~G~~V~v~dr~~~~~-~~l~~~~~---------------~~g--------- 53 (503)
.+++++|+|. ||..++. +|++.|+.|++.|.+++++ +.+..... ...
T Consensus 41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~ 120 (242)
T d2b0ja2 41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH 120 (242)
T ss_dssp CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred eeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence 3578888886 8888877 7899999999999998764 32221100 000
Q ss_pred -----CCCeeeeCCHHHHHhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 54 -----QLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 54 -----~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
..+++.++|+.|++++ +|+||+|||.+..+.++++++.+.+++|.+|+|+||+.+..+.++.+.+.+++++|
T Consensus 121 ~~~pEe~Gv~v~~d~~Eav~~---ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~v 197 (242)
T d2b0ja2 121 LVHPEDVGLKVTSDDREAVEG---ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNI 197 (242)
T ss_dssp SSCGGGGTCEEESCHHHHHTT---CSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEE
T ss_pred cCCHHHCCCEEECCHHHHHhc---CCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEE
Confidence 0146778999999998 99999999998889999999999999999999999999999999999999999999
Q ss_pred ecccCCCChhhhhcCC-cccCCCCHHHHHHHHHHHHHHhcccCCCCcEEEe
Q 010702 129 LGMGVSGGEEGARHGP-SLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYI 178 (503)
Q Consensus 129 i~~pvsgg~~~a~~G~-~i~~gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~ 178 (503)
++++.+++++ ...+. .++.+++++.++++.++|+.+| +.++.+
T Consensus 198 i~~hp~a~pe-~~g~~li~~~~aseE~iekv~elles~G------k~~~vv 241 (242)
T d2b0ja2 198 TSYHPGCVPE-MKGQVYIAEGYASEEAVNKLYEIGKIAR------GKAFKM 241 (242)
T ss_dssp EECBCSSCTT-TCCCEEEEESSSCHHHHHHHHHHHHHHH------SCEEEE
T ss_pred ECCCccCcCc-cccceEEecCCCCHHHHHHHHHHHHHHC------CCeEeC
Confidence 9876666654 22333 6677899999999999999999 666654
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.51 E-value=1.8e-13 Score=126.44 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=114.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc---------------ccCCCCeeeeCCHHHHHhccC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH---------------REGQLPLTGHYTPRDFVLSIQ 71 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------------~~g~~~i~~~~s~~e~~~~l~ 71 (503)
|||+|||+|.+|.++|..|+++||+|++||.++++++.+.+... ..+ ++...++..+++..
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~--~~~~~~~~~~~i~~-- 76 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTG--RLSGTTDFKKAVLD-- 76 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEESCHHHHHHT--
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhccc--ccccCCCHHHHHhh--
Confidence 68999999999999999999999999999999999887653211 111 46778899998887
Q ss_pred CCcEEEEecCCC---------hhHHHHHHHHH---hcCCCCCEEEecCCCChhhHHHHHHHHHhc--------CccEecc
Q 010702 72 RPRSVIILVKAG---------SPVDQTIAALS---EHMSPGDCIIDGGNEWYLNTERRIHEASQK--------GLLYLGM 131 (503)
Q Consensus 72 ~~dvIil~vp~~---------~~v~~vl~~l~---~~l~~g~iIId~st~~~~~t~~~~~~l~~~--------gi~~i~~ 131 (503)
+|++++|||++ ..+..+++.+. ....++++||-.||+.|..++++...+.+. .+++.-+
T Consensus 77 -~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~ 155 (202)
T d1mv8a2 77 -SDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTN 155 (202)
T ss_dssp -CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEEC
T ss_pred -CCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhh
Confidence 99999999974 23455555444 456688999999999999999876654321 3455566
Q ss_pred cCCCCh----hhhhcCCcccCCC-CHHHHHHHHHHHHHHh
Q 010702 132 GVSGGE----EGARHGPSLMPGG-SFEAYNNIRDILQKVA 166 (503)
Q Consensus 132 pvsgg~----~~a~~G~~i~~gg-~~~a~~~v~~ll~~ig 166 (503)
|-.-.+ .....-+.+++|| ++++.+.++++++.+.
T Consensus 156 PE~~~~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~ 195 (202)
T d1mv8a2 156 PEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELD 195 (202)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSS
T ss_pred hhhhcccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcC
Confidence 633222 1223333556675 6888999999998887
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=8.8e-14 Score=127.56 Aligned_cols=159 Identities=10% Similarity=0.142 Sum_probs=111.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh-------cccCCC---------------CeeeeCC
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA-------HREGQL---------------PLTGHYT 62 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~---------------~i~~~~s 62 (503)
|..||+|||+|.||.++|..++.+||+|.+||++++.++...+.- ...+.. ++....+
T Consensus 3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d 82 (192)
T d1f0ya2 3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD 82 (192)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence 346899999999999999999999999999999998655443210 000000 4567778
Q ss_pred HHHHHhccCCCcEEEEecCCChhHHHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh--c--CccEecccCCCCh
Q 010702 63 PRDFVLSIQRPRSVIILVKAGSPVDQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ--K--GLLYLGMGVSGGE 137 (503)
Q Consensus 63 ~~e~~~~l~~~dvIil~vp~~~~v~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~--~--gi~~i~~pvsgg~ 137 (503)
..+++.+ +|+|+.++|++..++.-+ .++.+.++++.++...|++.+. .+++..+.. + |.||+..|-.-.-
T Consensus 83 ~~~a~~~---ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i--~~la~~~~~p~r~ig~HffnP~~~~~l 157 (192)
T d1f0ya2 83 AASVVHS---TDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQI--TSIANATTRQDRFAGLHFFNPVPVMKL 157 (192)
T ss_dssp HHHHTTS---CSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCH--HHHHTTSSCGGGEEEEEECSSTTTCCE
T ss_pred hHhhhcc---cceehhhcccchhHHHHHHHHHhhhcccCceeeccCccccc--chhhhhccCHhHEEeeccccccCcccE
Confidence 7777776 999999999998877554 7888888888777766665542 234443322 2 6788765522111
Q ss_pred hhhhcCCcccCC--CCHHHHHHHHHHHHHHhcccCCCCcEEEeCC
Q 010702 138 EGARHGPSLMPG--GSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180 (503)
Q Consensus 138 ~~a~~G~~i~~g--g~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~ 180 (503)
. -++.| .+++.++.+..+++.+| +.++.+.+
T Consensus 158 V------EIv~g~~T~~~~i~~~~~~~~~lg------k~pV~v~D 190 (192)
T d1f0ya2 158 V------EVIKTPMTSQKTFESLVDFSKALG------KHPVSCKD 190 (192)
T ss_dssp E------EEECCTTCCHHHHHHHHHHHHHTT------CEEEEECS
T ss_pred E------EEcCCCCCCHHHHHHHHHHHHHcC------CEEEEeec
Confidence 0 12332 58999999999999999 77877743
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.49 E-value=2.2e-14 Score=126.62 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=100.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|||||||+|.||.+|+.+|.++| ++|.+|||++++.+++.++. ++...++.+++ .. +|+||+||++ ..
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~------~~~~~~~~~~v-~~---~Div~lavkP-~~ 69 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL------GVETSATLPEL-HS---DDVLILAVKP-QD 69 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT------CCEEESSCCCC-CT---TSEEEECSCH-HH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc------ccccccccccc-cc---cceEEEecCH-HH
Confidence 68999999999999999998887 89999999999999988764 35666666653 33 9999999986 56
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec-ccCCCChhhhhcCC-cccCC--CCHHHHHHHHHH
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG-MGVSGGEEGARHGP-SLMPG--GSFEAYNNIRDI 161 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~-~pvsgg~~~a~~G~-~i~~g--g~~~a~~~v~~l 161 (503)
+.++++++. ..+.+||+..++.. ...+.+.+.. ..+.+. +|-. +.....|. .+..+ .+++..+.++++
T Consensus 70 ~~~v~~~l~---~~~~~viS~~ag~~--~~~l~~~l~~-~~~iir~mpn~--p~~~~~g~t~~~~~~~~~~~~~~~v~~l 141 (152)
T d1yqga2 70 MEAACKNIR---TNGALVLSVAAGLS--VGTLSRYLGG-TRRIVRVMPNT--PGKIGLGVSGMYAEAEVSETDRRIADRI 141 (152)
T ss_dssp HHHHHTTCC---CTTCEEEECCTTCC--HHHHHHHTTS-CCCEEEEECCG--GGGGTCEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhHHHHh---hcccEEeecccCCC--HHHHHHHhCc-CcceEeecccc--hhHhcCCcEEEEeCCCCCHHHHHHHHHH
Confidence 777766553 35789998777654 3344444432 223332 2322 22334555 34343 368889999999
Q ss_pred HHHHh
Q 010702 162 LQKVA 166 (503)
Q Consensus 162 l~~ig 166 (503)
|+.+|
T Consensus 142 ~~~~G 146 (152)
T d1yqga2 142 MKSVG 146 (152)
T ss_dssp HHTTE
T ss_pred HHhCC
Confidence 99999
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.44 E-value=2.1e-13 Score=117.45 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=93.9
Q ss_pred CcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHH
Q 010702 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKI 259 (503)
Q Consensus 180 ~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i 259 (503)
+.|+|+.+|+++|.+.++.+++++|++.++++.| ++++++.+++ +.+.+.|+.++.+.+.+.. ++|.|+|.++++
T Consensus 1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~G-id~~~~~~~l---~~~~~~S~~~~~~~~~~~~-~~~~~~f~~~l~ 75 (133)
T d1vpda1 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAG-VNPDLVYQAI---RGGLAGSTVLDAKAPMVMD-RNFKPGFRIDLH 75 (133)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCCHHHHHHHHHHHT-TCCCCSSBHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---Hhccccchhhhhccchhhh-ccCCCCchHHHH
Confidence 3699999999999999999999999999999999 9999999998 6788899999999887765 568999999999
Q ss_pred HhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010702 260 LDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (503)
Q Consensus 260 ~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s 296 (503)
.||++ ++.+.|.+.|+|+|+...+ .+.|..
T Consensus 76 ~KDl~------l~~~~a~~~~~~~p~~~~~-~~~~~~ 105 (133)
T d1vpda1 76 IKDLA------NALDTSHGVGAQLPLTAAV-MEMMQA 105 (133)
T ss_dssp HHHHH------HHHHHHHHHTCCCHHHHHH-HHHHHH
T ss_pred HHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 99996 9999999999999999876 444443
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.43 E-value=3e-13 Score=116.72 Aligned_cols=107 Identities=19% Similarity=0.176 Sum_probs=91.5
Q ss_pred CcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhc------cccccCCCc
Q 010702 180 EGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIF------KVKDEYGEG 253 (503)
Q Consensus 180 ~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l------~~~~~~~~~ 253 (503)
|.|+|+.+|+++|.+.++.+++++|++.++++.| +|++.+.+++ +.+.+.|+.++...+.. ...++|.++
T Consensus 1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~G-ld~~~~~eil---~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (134)
T d3cuma1 1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANG-LEAKVLAEIM---RRSSGGNWALEVYNPWPGVMENAPASRDYSGG 76 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSS
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH---HhcccchhhhhhhhhhhhccchhhhcCCCCCC
Confidence 5699999999999999999999999999999999 9999999998 67888999998754321 112457899
Q ss_pred hhHHHHHhhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 010702 254 ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSG 297 (503)
Q Consensus 254 ~~ld~i~~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s~ 297 (503)
|.++.+.||+. ++.++|.+.|+|+|+...+ .+.|..+
T Consensus 77 f~~~l~~KDl~------l~~~~a~~~g~~~p~~~~a-~~~~~~a 113 (134)
T d3cuma1 77 FMAQLMAKDLG------LAQEAAQASASSTPMGSLA-LSLYRLL 113 (134)
T ss_dssp SBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHHHHH
T ss_pred cchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 99999999996 9999999999999999876 4555443
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.41 E-value=1.4e-13 Score=125.93 Aligned_cols=154 Identities=10% Similarity=0.024 Sum_probs=110.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCC-------CeeeeCCHHHHHhccCCCcEEEE
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL-------PLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~-------~i~~~~s~~e~~~~l~~~dvIil 78 (503)
|+||+|||+|.||+++|..|+++||+|++|+|+++.++.+.+.+.+...+ ++....++++++++ +|+||+
T Consensus 7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~---ad~iii 83 (189)
T d1n1ea2 7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG---AEIILF 83 (189)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT---CSCEEE
T ss_pred eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCC---CCEEEE
Confidence 35799999999999999999999999999999999999887665322111 57888999999887 999999
Q ss_pred ecCCChhHHHHHHHHHhc-----CCCCCEEEecCCCChhhHHH-HHHHHHh----cCccEecccCCCChhhhhcCC--cc
Q 010702 79 LVKAGSPVDQTIAALSEH-----MSPGDCIIDGGNEWYLNTER-RIHEASQ----KGLLYLGMGVSGGEEGARHGP--SL 146 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~-----l~~g~iIId~st~~~~~t~~-~~~~l~~----~gi~~i~~pvsgg~~~a~~G~--~i 146 (503)
+||. ..++++++++.+. +.++.+|+.++.+....+.. ..+.+.+ ..+.++..|-.. .+-++.-| ..
T Consensus 84 avPs-~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A-~Ev~~~~pt~~v 161 (189)
T d1n1ea2 84 VIPT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFA-IEVATGVFTCVS 161 (189)
T ss_dssp CSCH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCH-HHHHTTCCEEEE
T ss_pred cCcH-HHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcH-HHHHcCCCcEEE
Confidence 9998 5888898877653 35677788888776444332 3333332 223344444332 34444445 44
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 010702 147 MPGGSFEAYNNIRDILQK 164 (503)
Q Consensus 147 ~~gg~~~a~~~v~~ll~~ 164 (503)
+++-+.+..+.++++|+.
T Consensus 162 iAs~~~~~a~~i~~lfst 179 (189)
T d1n1ea2 162 IASADINVARRLQRIMST 179 (189)
T ss_dssp EECSSHHHHHHHHHHHSC
T ss_pred EEeCCHHHHHHHHHHhCC
Confidence 455688888889888863
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.41 E-value=4.6e-13 Score=115.18 Aligned_cols=105 Identities=15% Similarity=0.126 Sum_probs=91.5
Q ss_pred cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHH
Q 010702 181 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKIL 260 (503)
Q Consensus 181 ~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~ 260 (503)
.|+|+.+|+++|.+..+.+.+++|++.++++.| +|++++.+++ +.+.+.|+.++.+.+....+++|+++|.++.+.
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~G-ld~~~~~~vl---~~s~~~s~~~~~~~p~~~~~~~~~~~f~~~~~~ 76 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQG-VSAEKALEVI---NASSGRSNATENLIPQRVLTRAFPKTFALGLLV 76 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHh
Confidence 489999999999999999999999999999999 9999999998 678889999988776322236789999999999
Q ss_pred hhcCCcchHHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 010702 261 DKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLS 296 (503)
Q Consensus 261 ~~~~~kgtG~~~~~~A~~~gvp~p~~~~Av~~r~~s 296 (503)
||+. ++.+.|.++|+|+|+...+ .+.|..
T Consensus 77 KDl~------l~~~~a~~~g~~~pl~~~~-~~~~~~ 105 (132)
T d2cvza1 77 KDLG------IAMGVLDGEKAPSPLLRLA-REVYEM 105 (132)
T ss_dssp HHHH------HHHHHHTTTCCCCHHHHHH-HHHHHH
T ss_pred hHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 9996 9999999999999998865 444443
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.40 E-value=6.4e-13 Score=121.09 Aligned_cols=156 Identities=15% Similarity=0.191 Sum_probs=107.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-------ccCCC----------CeeeeCCHHHHHh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-------REGQL----------PLTGHYTPRDFVL 68 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~~----------~i~~~~s~~e~~~ 68 (503)
..||+|||+|.||.++|..++.+|++|.+||++++.+++..+... ..+.. ++....+.++ +.
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 82 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD-FG 82 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT-GG
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccc-cc
Confidence 468999999999999999999999999999999987665433210 01000 2445555544 33
Q ss_pred ccCCCcEEEEecCCChhHHH-HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc----CccEecccC-CCChhhhhc
Q 010702 69 SIQRPRSVIILVKAGSPVDQ-TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK----GLLYLGMGV-SGGEEGARH 142 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~~-vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~----gi~~i~~pv-sgg~~~a~~ 142 (503)
+ +|+||.++|++..++. ++.+|.+..+++.||...|++.+. .++.+.+... |.||+..|- +...+
T Consensus 83 ~---adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i--~~la~~~~~p~r~~g~Hf~nP~~~~~lVE---- 153 (186)
T d1wdka3 83 N---VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISI--SLLAKALKRPENFVGMHFFNPVHMMPLVE---- 153 (186)
T ss_dssp G---CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCH--HHHGGGCSCGGGEEEEECCSSTTTCCEEE----
T ss_pred c---cceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccH--HHHHHhccCchheEeeccccCcccCCeEE----
Confidence 3 9999999999988876 447888888888888776666543 3344433322 566665441 21111
Q ss_pred CCcccC--CCCHHHHHHHHHHHHHHhcccCCCCcEEEeCC
Q 010702 143 GPSLMP--GGSFEAYNNIRDILQKVAAQVDDGPCVTYIGE 180 (503)
Q Consensus 143 G~~i~~--gg~~~a~~~v~~ll~~ig~~~~~~~~v~~~G~ 180 (503)
++. ..+++.++.+..+++.+| +.++.+.+
T Consensus 154 ---iv~~~~T~~~~~~~~~~~~~~lg------k~pv~v~d 184 (186)
T d1wdka3 154 ---VIRGEKSSDLAVATTVAYAKKMG------KNPIVVND 184 (186)
T ss_dssp ---EEECSSCCHHHHHHHHHHHHHTT------CEEEEEES
T ss_pred ---ECCCCCCCHHHHHHHHHHHHHcC------CEEEEEec
Confidence 222 358899999999999999 77877743
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.38 E-value=1.7e-12 Score=117.24 Aligned_cols=113 Identities=19% Similarity=0.123 Sum_probs=89.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhccc----CC----CCeeeeCCHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHRE----GQ----LPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g~----~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
+||+|||+|.||..+|..|+++||+|.+|+|++++.+.+.+.+... +. .......++.|++++ +|+||+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---aD~iii 78 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD---ADVILI 78 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT---CSEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcC---CCEEEE
Confidence 5899999999999999999999999999999999998887654211 00 023446778888887 999999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK 124 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~ 124 (503)
++|+. .++.+++++.+++.++.+|+..++... ........+...
T Consensus 79 ~v~~~-~~~~~~~~i~~~l~~~~~iv~~~g~~~-~~~~~~~~~~~~ 122 (184)
T d1bg6a2 79 VVPAI-HHASIAANIASYISEGQLIILNPGATG-GALEFRKILREN 122 (184)
T ss_dssp CSCGG-GHHHHHHHHGGGCCTTCEEEESSCCSS-HHHHHHHHHHHT
T ss_pred EEchh-HHHHHHHHhhhccCCCCEEEEeCCCCc-cHHHHHHHHHHh
Confidence 99995 789999999999999999887666544 344555555544
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.33 E-value=1.5e-12 Score=117.87 Aligned_cols=152 Identities=11% Similarity=0.114 Sum_probs=99.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC--hhHHHHHHHhhcccC---CC---CeeeeCCHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRT--TSKVDETLDRAHREG---QL---PLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~--~~~~~~l~~~~~~~g---~~---~i~~~~s~~e~~~~l~~~dvIil 78 (503)
|||+|||+|.||.++|..|+++|++|.+|.|+ ++.++.+.+...... .+ .+...++.++++++ +|+|++
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---ad~Ii~ 77 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLEN---AEVVLL 77 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTT---CSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhc---cchhhc
Confidence 69999999999999999999999999999884 445666654322110 00 24556777888877 999999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhH--HHHHHHHHhc-C-----ccEecccCCCChhhhhcCC--cccC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNT--ERRIHEASQK-G-----LLYLGMGVSGGEEGARHGP--SLMP 148 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t--~~~~~~l~~~-g-----i~~i~~pvsgg~~~a~~G~--~i~~ 148 (503)
+||. ..++++++++.+.+++..+|+.+....+... ....+.+.+. + +.++..|-.. .+-++.-| ..++
T Consensus 78 avps-~~~~~~~~~l~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A-~Ei~~~~pt~~via 155 (180)
T d1txga2 78 GVST-DGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIA-REVAKRMPTTVVFS 155 (180)
T ss_dssp CSCG-GGHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCH-HHHHTTCCEEEEEE
T ss_pred ccch-hhhHHHHHhhccccccceecccccCccccccccccchHHHHhhhcccccceeEEcCCccH-HHHHcCCCcEEEEE
Confidence 9998 5899999999999876655554333321111 1122233221 1 2233333322 33444445 4556
Q ss_pred CCCHHHHHHHHHHHH
Q 010702 149 GGSFEAYNNIRDILQ 163 (503)
Q Consensus 149 gg~~~a~~~v~~ll~ 163 (503)
+.+.+..+.++++|+
T Consensus 156 s~~~~~a~~i~~~f~ 170 (180)
T d1txga2 156 SPSESSANKMKEIFE 170 (180)
T ss_dssp CSCHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHC
Confidence 678888888888875
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.14 E-value=2.4e-10 Score=104.40 Aligned_cols=149 Identities=11% Similarity=0.056 Sum_probs=97.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc-----------ccCCCCeeeeCCHHHHHhccCCCcE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH-----------REGQLPLTGHYTPRDFVLSIQRPRS 75 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-----------~~g~~~i~~~~s~~e~~~~l~~~dv 75 (503)
|||+|||+|.+|.++|..|+ .||+|.+||.++++++.+.+... .....++....+......+ +|+
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~---~~i 76 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKE---AEL 76 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHH---CSE
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhc---ccc
Confidence 68999999999999998775 69999999999999887763210 0000134555566665666 999
Q ss_pred EEEecCCCh----------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCC--CCh--hhhh
Q 010702 76 VIILVKAGS----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS--GGE--EGAR 141 (503)
Q Consensus 76 Iil~vp~~~----------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs--gg~--~~a~ 141 (503)
|++|+|.+. .++.+...+.. ..++.+|+-.||..|.+++++...+.+.. ++-+|-. -|. ....
T Consensus 77 i~v~vpt~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~iii~Stv~pgt~~~~~~~~~~~~--~~~~PE~i~~G~ai~d~~ 153 (196)
T d1dlja2 77 VIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTDR--IIFSPEFLRESKALYDNL 153 (196)
T ss_dssp EEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCSC--EEECCCCCCTTSTTHHHH
T ss_pred ccccCCccccccCCCcceeEEeehhhhhhh-cccceeEEeeeecCceeeeeeeeccchhh--hccchhhcchhhhHhhcc
Confidence 999998763 23334444444 35788999999999999988877665543 3334422 221 1122
Q ss_pred cCCcccCCCCHHHHHHHHHHH
Q 010702 142 HGPSLMPGGSFEAYNNIRDIL 162 (503)
Q Consensus 142 ~G~~i~~gg~~~a~~~v~~ll 162 (503)
+-+.++.|++.+..+++..++
T Consensus 154 ~p~riv~G~~~~~~~~~~~~~ 174 (196)
T d1dlja2 154 YPSRIIVSCEENDSPKVKADA 174 (196)
T ss_dssp SCSCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEeCCHhhHHHHHHHH
Confidence 333667787655444444333
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.4e-11 Score=109.17 Aligned_cols=101 Identities=14% Similarity=0.121 Sum_probs=75.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
|||+|||+|.||+.+|..|+++||+|++++|++++.+.....+............+..+.... +|+||+++|.. ++
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~iii~vka~-~~ 76 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLAT---SDLLLVTLKAW-QV 76 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHT---CSEEEECSCGG-GH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcc---cceEEEeeccc-ch
Confidence 699999999999999999999999999999998754432211111000011223334444555 99999999995 89
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
+++++.+.+.+.++++|+.+.|+..
T Consensus 77 ~~~~~~l~~~~~~~~~Iv~~qNG~~ 101 (167)
T d1ks9a2 77 SDAVKSLASTLPVTTPILLIHNGMG 101 (167)
T ss_dssp HHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred HHHHHhhccccCcccEEeeccCccc
Confidence 9999999999999999999988753
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.89 E-value=2.2e-09 Score=97.58 Aligned_cols=111 Identities=17% Similarity=0.217 Sum_probs=92.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|+.+..-|.+|.+||+....-.. ... ++....++++++.. +|+|++++|-....
T Consensus 50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-~~~-------~~~~~~~l~~ll~~---sD~i~~~~plt~~T 118 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE-RAL-------GLQRVSTLQDLLFH---SDCVTLHCGLNEHN 118 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH-HHH-------TCEECSSHHHHHHH---CSEEEECCCCCTTC
T ss_pred ceEEEeccccccccceeeeeccccceeeccCcccccch-hhh-------ccccccchhhcccc---CCEEEEeecccccc
Confidence 57999999999999999999999999999987553221 111 24567899999998 99999999987777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccE
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~ 128 (503)
+..+ .+.+..++++.++|++|.+..-+...+.+.+++..+..
T Consensus 119 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~ 161 (193)
T d1mx3a1 119 HHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRG 161 (193)
T ss_dssp TTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEE
T ss_pred hhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCceE
Confidence 7777 57778899999999999999889999999888765543
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.85 E-value=4.1e-09 Score=95.65 Aligned_cols=121 Identities=15% Similarity=0.212 Sum_probs=98.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|+.+..-|.+|.+||+............ .....+++++++. +|+|++++|-....
T Consensus 48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~-------~~~~~~l~~ll~~---sD~v~l~~plt~~T 117 (191)
T d1gdha1 48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQ-------ATFHDSLDSLLSV---SQFFSLNAPSTPET 117 (191)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHT-------CEECSSHHHHHHH---CSEEEECCCCCTTT
T ss_pred cceEEeecccchHHHHHHHHhhccccccccccccccchhhccc-------ccccCCHHHHHhh---CCeEEecCCCCchH
Confidence 5799999999999999999999999999998765433333221 3456789999998 99999999988888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCCh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~ 137 (503)
+.++ .+.+..+++|.++|++|-+..-+...+.+.+++..+.....-|.-.+
T Consensus 118 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV~~~E 169 (191)
T d1gdha1 118 RYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGE 169 (191)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTT
T ss_pred hheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEEEECCCCC
Confidence 8888 67888899999999999999999999999998876654444454444
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.85 E-value=2.1e-09 Score=96.81 Aligned_cols=105 Identities=11% Similarity=0.192 Sum_probs=89.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|+.+..-|.+|.+|||++.. + ......++++++.. +|+|++++|.....
T Consensus 43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~-------~------~~~~~~~l~ell~~---sDiv~~~~pl~~~t 106 (181)
T d1qp8a1 43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE-------G------PWRFTNSLEEALRE---ARAAVCALPLNKHT 106 (181)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC-------S------SSCCBSCSHHHHTT---CSEEEECCCCSTTT
T ss_pred ceEEEeccccccccceeeeeccccccccccccccc-------c------ceeeeechhhhhhc---cchhhccccccccc
Confidence 57999999999999999999999999999998642 1 12345788999887 99999999988777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+.++ .+.+..++++.++|++|.+..-+...+.+.+++..+.
T Consensus 107 ~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~ 148 (181)
T d1qp8a1 107 RGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF 148 (181)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred ccccccceeeeccccceEEeccccccccchhhhhhcccCcEE
Confidence 7777 6788889999999999999888888888988886544
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.80 E-value=6.4e-09 Score=94.73 Aligned_cols=118 Identities=15% Similarity=0.129 Sum_probs=94.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|+.|..-|.+|.+||+....... ..+ ....++++++.. +|+|++++|-....
T Consensus 44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~--~~~--------~~~~~l~~~l~~---sDii~~~~plt~~T 110 (197)
T d1j4aa1 44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE--KKG--------YYVDSLDDLYKQ---ADVISLHVPDVPAN 110 (197)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH--HTT--------CBCSCHHHHHHH---CSEEEECSCCCGGG
T ss_pred CeEEEecccccchhHHHhHhhhcccccccCcccccccc--cce--------eeeccccccccc---cccccccCCccccc
Confidence 57999999999999999999999999999987654222 111 234689999988 99999999988777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCCh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~ 137 (503)
+.++ .+.+..+++|.++|++|.+..-+...+.+.+.+..+.....-|.-.+
T Consensus 111 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~E 162 (197)
T d1j4aa1 111 VHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGE 162 (197)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTC
T ss_pred cccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeeccccC
Confidence 7777 67778899999999999998888888888888865544444455444
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.77 E-value=7.7e-09 Score=93.62 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=93.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|+.|..-|.+|.+||+........... ++....+++++++. +|+|++++|-....
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~-------~~~~~~~l~~~l~~---sD~v~~~~plt~~T 114 (188)
T d2naca1 45 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL-------NLTWHATREDMYPV---CDVVTLNCPLHPET 114 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHH-------TCEECSSHHHHGGG---CSEEEECSCCCTTT
T ss_pred cceeeccccccchhhhhhhhccCceEEEEeeccccccccccc-------cccccCCHHHHHHh---ccchhhcccccccc
Confidence 589999999999999999999999999999875443333322 24567899999888 99999999988888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
+.++ .+.+..+++|.++|++|.+..-+...+.+.+++..+.
T Consensus 115 ~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ 156 (188)
T d2naca1 115 EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLA 156 (188)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEE
T ss_pred hhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCce
Confidence 8888 6788889999999999999988999999988876443
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.76 E-value=1.3e-08 Score=91.68 Aligned_cols=116 Identities=15% Similarity=0.195 Sum_probs=94.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|+.+..-|.+|.+||+......... .+ + ...+++|+++. ||+|++++|-....
T Consensus 45 k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~-~~-------~-~~~~l~ell~~---sDiv~~~~Plt~~T 112 (184)
T d1ygya1 45 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ-LG-------I-ELLSLDDLLAR---ADFISVHLPKTPET 112 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH-HT-------C-EECCHHHHHHH---CSEEEECCCCSTTT
T ss_pred eeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhh-cC-------c-eeccHHHHHhh---CCEEEEcCCCCchh
Confidence 5799999999999999999999999999998876543322 21 2 24689999988 99999999988888
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCC
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVS 134 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvs 134 (503)
+.++ .+.+..++++.++|++|.+..-+...+.+.+.+..+.....-|.
T Consensus 113 ~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV~ 161 (184)
T d1ygya1 113 AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVF 161 (184)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSC
T ss_pred hhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeCC
Confidence 8888 67888899999999999999999999999998865544333333
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.70 E-value=9.5e-09 Score=93.84 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=94.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|+.+|+.|..-|.+|.+||+.+.... . ......+++++... +|+|++++|.....
T Consensus 46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~-------~----~~~~~~~l~~l~~~---~D~v~~~~plt~~T 111 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD-------H----PDFDYVSLEDLFKQ---SDVIDLHVPGIEQN 111 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC-------C----TTCEECCHHHHHHH---CSEEEECCCCCGGG
T ss_pred eeeeeeecccccccccccccccceeeeccCCccchhh-------h----cchhHHHHHHHHHh---cccceeeecccccc
Confidence 5799999999999999999999999999998754311 0 01235689999988 99999999988887
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCCCh
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSGGE 137 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsgg~ 137 (503)
+.++ .+.+..++++.++|+++.+..-+...+.+.+++..+.....-|.-.+
T Consensus 112 ~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~~~E 163 (199)
T d1dxya1 112 THIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYE 163 (199)
T ss_dssp TTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTH
T ss_pred cccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccccCCC
Confidence 7777 67778899999999999999888999999888765554444455444
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.69 E-value=3.2e-08 Score=88.32 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=51.8
Q ss_pred CcEEEE-cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLA-GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgII-GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
|||+|| |+|.||++||+.|+++||+|.+|+|++++++++.++....+........+....... .+.....++..
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 75 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEA---CDIAVLTIPWE 75 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHH---CSEEEECSCHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccch---hhhhhhheeee
Confidence 689999 899999999999999999999999999998888765432110012223334444443 55666665543
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.66 E-value=1.6e-08 Score=91.54 Aligned_cols=109 Identities=16% Similarity=0.186 Sum_probs=91.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|||||+|.+|..+|+.+...|.+|.+||+...... . ......+++++++. +|+|++++|-....
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----~-------~~~~~~~l~ell~~---sDii~i~~plt~~T 110 (188)
T d1sc6a1 45 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----G-------NATQVQHLSDLLNM---SDVVSLHVPENPST 110 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----T-------TCEECSCHHHHHHH---CSEEEECCCSSTTT
T ss_pred eEEEEeecccchhhhhhhcccccceEeeccccccchh----h-------hhhhhhhHHHHHhh---ccceeecccCCcch
Confidence 5899999999999999999999999999998754210 0 13456789999998 99999999987777
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
+.++ ++.+..++++.++|+++.+..-+...+.+.+.+..+...
T Consensus 111 ~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a 154 (188)
T d1sc6a1 111 KNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGA 154 (188)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEE
T ss_pred hhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEE
Confidence 7777 678888999999999999999899999999987654433
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.60 E-value=9.1e-08 Score=81.10 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=76.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~~~ 84 (503)
+++.|+|+|.+|..+|+.|.+.|++|.++|.++++++++.+.+... +....+-.++.. .++++|.+|++++++.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~----~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~ 76 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHA----VIANATEENELLSLGIRNFEYVIVAIGANI 76 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEE----EECCTTCTTHHHHHTGGGCSEEEECCCSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcc----eeeecccchhhhccCCccccEEEEEcCchH
Confidence 3789999999999999999999999999999999999887655321 111112222222 2445999999999875
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
....++..+....+...+|+-..+. ...+.+...|+.++=.
T Consensus 77 ~~~~~~~~~~~~~~~~~iiar~~~~------~~~~~l~~~Gad~vi~ 117 (134)
T d2hmva1 77 QASTLTTLLLKELDIPNIWVKAQNY------YHHKVLEKIGADRIIH 117 (134)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCSH------HHHHHHHHHTCSEEEC
T ss_pred HhHHHHHHHHHHcCCCcEEeecccH------hHHHHHHHCCCCEEEC
Confidence 5544445555555555565554432 2344456667766543
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.55 E-value=1.3e-07 Score=83.00 Aligned_cols=95 Identities=19% Similarity=0.164 Sum_probs=69.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.++|.|||+|.||..++.+|...|. +|++++|+.++++++.+.... .....+++.+.+.+ +|+||.|++.+.
T Consensus 24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~----~~~~~~~~~~~l~~---~Divi~atss~~ 96 (159)
T d1gpja2 24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG----EAVRFDELVDHLAR---SDVVVSATAAPH 96 (159)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC----EECCGGGHHHHHHT---CSEEEECCSSSS
T ss_pred cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc----ccccchhHHHHhcc---CCEEEEecCCCC
Confidence 4689999999999999999999998 599999999999988876421 12334455555555 999999998764
Q ss_pred hH--HHHHHHHHhcC--CCCCEEEecC
Q 010702 85 PV--DQTIAALSEHM--SPGDCIIDGG 107 (503)
Q Consensus 85 ~v--~~vl~~l~~~l--~~g~iIId~s 107 (503)
.+ ++.++.....- .+..+|||.+
T Consensus 97 ~ii~~~~i~~~~~~r~~~~~~~iiDla 123 (159)
T d1gpja2 97 PVIHVDDVREALRKRDRRSPILIIDIA 123 (159)
T ss_dssp CCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred ccccHhhhHHHHHhcccCCCeEEEeec
Confidence 32 44444443322 2445999996
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.51 E-value=2.3e-07 Score=81.89 Aligned_cols=116 Identities=9% Similarity=0.050 Sum_probs=77.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCee--eeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLT--GHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~--~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
++|.|||+|.||..+|.+|+++||+|+++||+.++++++.+..... .+. ......+....+...|+++.++|...
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~ 79 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHS---TPISLDVNDDAALDAEVAKHDLVISLIPYTF 79 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTE---EEEECCTTCHHHHHHHHTTSSEEEECSCGGG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhccccc---ccccccccchhhhHhhhhccceeEeeccchh
Confidence 5899999999999999999999999999999999999988754211 011 11222333333444899999888753
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
...+..... ..+..++|.+...+ ....+.+.....+..++.
T Consensus 80 -~~~~~~~~~---~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ 120 (182)
T d1e5qa1 80 -HATVIKSAI---RQKKHVVTTSYVSP-AMMELDQAAKDAGITVMN 120 (182)
T ss_dssp -HHHHHHHHH---HHTCEEECSSCCCH-HHHHTHHHHHHTTCEEEC
T ss_pred -hhHHHHHHH---hhccceeecccCcH-HHHHHHHHhccccceeeh
Confidence 333333333 34677888876543 445555655666655554
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.49 E-value=8e-07 Score=75.03 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=76.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~~~ 84 (503)
|+|-|+|+|.+|..+|+.|.+.|++|.+.|.++++++++.+..... -+.+..+-.++.. .++.+|.++.+++++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~---vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d- 76 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL---VINGDCTKIKTLEDAGIEDADMYIAVTGKE- 76 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE---EEESCTTSHHHHHHTTTTTCSEEEECCSCH-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhh---hccCcccchhhhhhcChhhhhhhcccCCcH-
Confidence 6899999999999999999999999999999999999887652111 1222233334443 245799999888875
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEe
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYL 129 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i 129 (503)
...-.+..+...+.+..+|+-..+.. ..+.+.+.|+.++
T Consensus 77 ~~N~~~~~~~k~~~~~~iI~~~~~~~------~~~~l~~~G~d~v 115 (132)
T d1lssa_ 77 EVNLMSSLLAKSYGINKTIARISEIE------YKDVFERLGVDVV 115 (132)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECSSTT------HHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHcCCceEEEEecCHH------HHHHHHHCCCCEE
Confidence 44434444555566777776555432 2334556677554
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.33 E-value=2.1e-06 Score=75.15 Aligned_cols=109 Identities=20% Similarity=0.215 Sum_probs=76.4
Q ss_pred CcEEEEcccHHHHH-HHHHHHhC-CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQN-LALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~-lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
+||||||+|.||.. ....+... ++++ .++|+++++.+.+.+.. ++..+++.+++.++ +|+|++++|+.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~------~~~~~~~~~~l~~~---~D~V~I~tp~~ 72 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW------RIPYADSLSSLAAS---CDAVFVHSSTA 72 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH------TCCBCSSHHHHHTT---CSEEEECSCTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc------cccccccchhhhhh---cccccccccch
Confidence 58999999999986 45556654 5665 48899999988887654 24567888998876 99999999997
Q ss_pred hhHHHHHHHHHhcCCCC-CEEEec-CCCChhhHHHHHHHHHhcCccE
Q 010702 84 SPVDQTIAALSEHMSPG-DCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g-~iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (503)
...+-+...+ . .| .++++- -+....+..++.+..++.|..+
T Consensus 73 ~h~~~~~~al-~---~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~ 115 (164)
T d1tlta1 73 SHFDVVSTLL-N---AGVHVCVDKPLAENLRDAERLVELAARKKLTL 115 (164)
T ss_dssp HHHHHHHHHH-H---TTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred hccccccccc-c---ccceeeccccccCCHHHHHHHHHHHHHcCCcE
Confidence 6544443333 3 33 456653 2234567777777777777544
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.31 E-value=1.2e-06 Score=76.36 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=71.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.++|+|||.|.-|.+-|+||.+.|.+|++--|...+ .+...+.| +. ..+++|+++. +|+|++.+|+.
T Consensus 16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~G-------f~-v~~~~eA~~~---aDiim~L~PD~- 83 (182)
T d1np3a2 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHG-------LK-VADVKTAVAA---ADVVMILTPDE- 83 (182)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTT-------CE-EECHHHHHHT---CSEEEECSCHH-
T ss_pred CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhc-------cc-cccHHHHhhh---cCeeeeecchH-
Confidence 368999999999999999999999999998777543 34333333 33 4689999988 99999999984
Q ss_pred hHHHHH-HHHHhcCCCCCEEEecC
Q 010702 85 PVDQTI-AALSEHMSPGDCIIDGG 107 (503)
Q Consensus 85 ~v~~vl-~~l~~~l~~g~iIId~s 107 (503)
.-.++. +.+.|.|++|+.+.-..
T Consensus 84 ~q~~vy~~~I~p~lk~g~~L~FaH 107 (182)
T d1np3a2 84 FQGRLYKEEIEPNLKKGATLAFAH 107 (182)
T ss_dssp HHHHHHHHHTGGGCCTTCEEEESC
T ss_pred HHHHHHHHhhhhhcCCCcEEEEec
Confidence 556667 57999999999887544
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.30 E-value=3.5e-06 Score=75.09 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=80.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
+||||||+|.||...+..+... +++|. ++|+++++.+.+.+..... .....++++++++++ .+.|+|++++|+..
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~-~~iD~v~I~tp~~~ 78 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYP--ESTKIHGSYESLLED-PEIDALYVPLPTSL 78 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCC--TTCEEESSHHHHHHC-TTCCEEEECCCGGG
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccc--cceeecCcHHHhhhc-cccceeeecccchh
Confidence 5899999999999999999876 56765 7899999988877653211 024578899999875 45899999999976
Q ss_pred hHHHHHHHHHhcCCCCC-EEEec-CCCChhhHHHHHHHHHhcCccE
Q 010702 85 PVDQTIAALSEHMSPGD-CIIDG-GNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~-iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (503)
..+-+... +..|. ++++- -.....+.+++.+..++++..+
T Consensus 79 h~~~~~~~----l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~ 120 (184)
T d1ydwa1 79 HVEWAIKA----AEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI 120 (184)
T ss_dssp HHHHHHHH----HTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred hcchhhhh----hhccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence 55443332 33444 44442 2234566777777777766654
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.19 E-value=6.8e-06 Score=70.55 Aligned_cols=99 Identities=11% Similarity=0.077 Sum_probs=65.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHh----hcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDR----AHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~----~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
.+||+|||+|.+|.++|..|+..| .+|.++|+++++.+..... ....+ .......+++++ . .||+|+++
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~-~~~~~~~d~~~~-~---~adivvit 79 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTA-PKKIYSGEYSDC-K---DADLVVIT 79 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSC-CCEEEECCGGGG-T---TCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccC-CceEeeccHHHh-c---cccEEEEe
Confidence 469999999999999999999988 4899999999875433211 11111 133445566654 3 39999998
Q ss_pred cCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
...+. .++++..++.++ .+..+++..||..
T Consensus 80 ag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvtNPv 124 (146)
T d1ez4a1 80 AGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPV 124 (146)
T ss_dssp CCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeCCcc
Confidence 64321 233444566664 4677888888743
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.16 E-value=2.5e-06 Score=74.37 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=75.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC-Chh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA-GSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~-~~~ 85 (503)
.||.|||.|..|..=++...+.|-.|+++|+++++.+++....... -.....+.+.+.+.++++|+||-++-- +..
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~---~~~~~~~~~~l~~~~~~aDivI~aalipG~~ 109 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR---VELLYSNSAEIETAVAEADLLIGAVLVPGRR 109 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG---SEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc---ceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence 5899999999999999999999999999999999998887664332 123344555555555569999998732 222
Q ss_pred HHHHH-HHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTI-AALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl-~~l~~~l~~g~iIId~st~ 109 (503)
...++ ++.+..+++|.+|||.+-.
T Consensus 110 aP~lIt~~mv~~Mk~GSVIVDvaid 134 (168)
T d1pjca1 110 APILVPASLVEQMRTGSVIVDVAVD 134 (168)
T ss_dssp CCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred cCeeecHHHHhhcCCCcEEEEeecC
Confidence 22233 6778889999999998764
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.15 E-value=8.7e-06 Score=70.01 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=69.0
Q ss_pred CCcCCCCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHh---hcccCCCCee-eeCCHHHHHhccCCCc
Q 010702 1 MEASALSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR---AHREGQLPLT-GHYTPRDFVLSIQRPR 74 (503)
Q Consensus 1 M~~~~~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~---~~~~g~~~i~-~~~s~~e~~~~l~~~d 74 (503)
|......||+|||+|.+|.++|..|+..|. ++.++|+++++++..... ....-..... ...+.++ .+ ++|
T Consensus 1 m~~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~-l~---daD 76 (148)
T d1ldna1 1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDD-CR---DAD 76 (148)
T ss_dssp CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGG-TT---TCS
T ss_pred CCCCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHH-hc---cce
Confidence 444445689999999999999999999886 799999999875433211 1000000222 3344443 33 399
Q ss_pred EEEEecCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 75 SVIILVKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 75 vIil~vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
+|+++..... .++++.+.+.++- ++.+++..||.....+
T Consensus 77 vvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~~ivvtNPvd~~t 130 (148)
T d1ldna1 77 LVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVDILT 130 (148)
T ss_dssp EEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHHHH
T ss_pred eEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhC-CCceEEEecCccHHHH
Confidence 9999864321 2445556777765 5668887877544333
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.13 E-value=2.2e-05 Score=69.55 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=76.0
Q ss_pred CcEEEEcccHHHHH-HHHHHHhCC--CcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQN-LALNVAEKG--FPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~-lA~~L~~~G--~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
.||||||+|.+|.. .+..+.+.+ ++|. ++|+++++.+.+.+.... ...+++++|++++ ++.|+|++++|+
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~-----~~~~~~~~ell~~-~~id~v~I~tp~ 77 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN-----PAVFDSYEELLES-GLVDAVDLTLPV 77 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS-----CEEESCHHHHHHS-SCCSEEEECCCG
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccc-----cceeeeeeccccc-cccceeeccccc
Confidence 48999999999987 466777644 4544 789999999888765421 3567899999875 447999999998
Q ss_pred ChhHHHHHHHHHhcCCCC-CEEEec-CCCChhhHHHHHHHHHhcCcc
Q 010702 83 GSPVDQTIAALSEHMSPG-DCIIDG-GNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g-~iIId~-st~~~~~t~~~~~~l~~~gi~ 127 (503)
....+ ++..++. .| .++++- -+....+..++.+..++.+..
T Consensus 78 ~~h~~-~~~~al~---~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~ 120 (181)
T d1zh8a1 78 ELNLP-FIEKALR---KGVHVICEKPISTDVETGKKVVELSEKSEKT 120 (181)
T ss_dssp GGHHH-HHHHHHH---TTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred ccccc-ccccccc---cchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence 75544 3333333 34 455553 223456666777777776654
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.10 E-value=9.9e-06 Score=70.86 Aligned_cols=112 Identities=13% Similarity=0.035 Sum_probs=76.4
Q ss_pred CcEEEEcccHHHHH-HHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQN-LALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~-lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
+||||||+|.||.. ....+.+. +.++.++|+++++.+.+.+.... ...+++.+++++. +.|+|++++|+..
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~--~iD~V~I~tp~~~ 74 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRV-----SATCTDYRDVLQY--GVDAVMIHAATDV 74 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTC-----CCCCSSTTGGGGG--CCSEEEECSCGGG
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccc-----ccccccHHHhccc--ccceecccccccc
Confidence 58999999999976 45566555 45788999999999888775321 1346788887763 4899999999976
Q ss_pred hHHHHHHHHHhcCCCCCEEEec-CCCChhhHHHHHHHHHhcCccE
Q 010702 85 PVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (503)
..+-+...+... -.++++- -.....+.+++.+..++++..+
T Consensus 75 H~~~~~~al~~g---k~V~~EKP~~~~~~e~~~l~~~a~~~~~~~ 116 (167)
T d1xeaa1 75 HSTLAAFFLHLG---IPTFVDKPLAASAQECENLYELAEKHHQPL 116 (167)
T ss_dssp HHHHHHHHHHTT---CCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred cccccccccccc---cccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 655444433321 2366652 2234466777777777776644
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.07 E-value=1.9e-05 Score=68.34 Aligned_cols=105 Identities=10% Similarity=0.135 Sum_probs=69.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc----ccC-CCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH----REG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~----~~g-~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
++||+|||+|.+|.++|..|+..++ ++.++|+++++++....... ..+ ...+....+.++..++ +|+|+++
T Consensus 7 ~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---adiVvit 83 (154)
T d1pzga1 7 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG---ADCVIVT 83 (154)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT---CSEEEEC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcC---CCeEEEe
Confidence 4689999999999999999998886 79999999876544332110 000 0134455667776666 9999998
Q ss_pred cCCC------------h--------hHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 80 VKAG------------S--------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 80 vp~~------------~--------~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
...+ . .++++++.+.++- ++.+|+..||-....+
T Consensus 84 ag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~-p~aiviivsNPvd~lt 137 (154)
T d1pzga1 84 AGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCMV 137 (154)
T ss_dssp CSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHH
T ss_pred cccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcC-CCcEEEEeCCcHHHHH
Confidence 7321 0 2445556666554 5678888887543333
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=98.03 E-value=1.2e-05 Score=73.83 Aligned_cols=117 Identities=11% Similarity=0.041 Sum_probs=78.2
Q ss_pred CcEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLAGLAVMGQN-LALNVAEK-GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgIIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
-+|||||+|.||.. +...+... +++|. ++|+++++.+.+.+...... ..+..++|.++++++ ++.|+|++++|+.
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~-~~~~~~~d~~ell~~-~~iD~V~I~tp~~ 111 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDP-RKIYDYSNFDKIAKD-PKIDAVYIILPNS 111 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCG-GGEECSSSGGGGGGC-TTCCEEEECSCGG
T ss_pred EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhcccc-ccccccCchhhhccc-ccceeeeeccchh
Confidence 47999999999975 55555554 56655 88999999988877532110 024557889998874 4579999999997
Q ss_pred hhHHHHHHHHHhcCCCCCEEEec-CCCChhhHHHHHHHHHhcCccE
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (503)
...+-++..+... -.++++- -+..+.+..++.+..++.++.+
T Consensus 112 ~H~~~~~~al~~g---k~v~~EKPla~~~~e~~~l~~~a~~~~~~~ 154 (221)
T d1h6da1 112 LHAEFAIRAFKAG---KHVMCEKPMATSVADCQRMIDAAKAANKKL 154 (221)
T ss_dssp GHHHHHHHHHHTT---CEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHhhhcc---hhhhcCCCccCCHHHHHHHHHHHHhcCCcE
Confidence 6655554444322 2455552 2234566777777777766644
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=1e-05 Score=70.27 Aligned_cols=89 Identities=11% Similarity=-0.001 Sum_probs=68.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++++|+|.|.+|+.+|+.+...|.+|.+||++|-+.-+..-.+ . ...+.++++.. +|+|++++....
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG-------~-~v~~~~~a~~~---adivvtaTGn~~-- 91 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEG-------Y-EVTTMDEACQE---GNIFVTTTGCID-- 91 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------C-EECCHHHHTTT---CSEEEECSSCSC--
T ss_pred CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCc-------e-Eeeehhhhhhh---ccEEEecCCCcc--
Confidence 5799999999999999999999999999999997644433333 2 34578888776 999988876532
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCC
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~ 110 (503)
++ .+-.+.+++|.++.+.+...
T Consensus 92 --vI~~eh~~~MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 92 --IILGRHFEQMKDDAIVCNIGHFD 114 (163)
T ss_dssp --SBCHHHHTTCCTTEEEEECSSST
T ss_pred --chhHHHHHhccCCeEEEEecccc
Confidence 23 45567789999999976543
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.00 E-value=7.1e-06 Score=73.94 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC------CcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG------FPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G------~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
++|+|||.|.-|.+-|+||.+.| .+|.+-=|.. ...+...+.|...- +. ...+.+|+++. +|+|++.
T Consensus 45 KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~--~~-~v~~v~EAv~~---ADiVmiL 118 (226)
T d1qmga2 45 KQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEE--NG-TLGDMWETISG---SDLVLLL 118 (226)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGG--GT-CEEEHHHHHHT---CSEEEEC
T ss_pred CEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccC--CC-cccCHHHHHhh---CCEEEEe
Confidence 57999999999999999999955 5677664433 33444444442100 00 13478888887 9999999
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecC
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGG 107 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~s 107 (503)
+|+. .-.++.+++.|+|++|+.+.-.-
T Consensus 119 lPDe-~Q~~vy~~I~p~Lk~G~~L~FaH 145 (226)
T d1qmga2 119 ISDS-AQADNYEKVFSHMKPNSILGLSH 145 (226)
T ss_dssp SCHH-HHHHHHHHHHHHSCTTCEEEESS
T ss_pred cchH-HHHHHHHHHHHhcCCCceeeecc
Confidence 9995 55668899999999999887643
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.98 E-value=2.5e-05 Score=66.46 Aligned_cols=99 Identities=19% Similarity=0.137 Sum_probs=64.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhh----cc-cCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRA----HR-EGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~----~~-~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|||+|||+|.+|.++|..|+..| .++.++|+++++.+...... .. ....++...++.+++ ++ +|+|+++
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~-~d---advvvit 76 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADT-AN---SDIVIIT 76 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGG-TT---CSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHh-cC---CeEEEEE
Confidence 68999999999999999999998 48999999987654332111 00 000124444555443 33 9999998
Q ss_pred cCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 VKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.-. +. .++++.+.+.++- |+.+++..||-.
T Consensus 77 ag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPv 121 (142)
T d1guza1 77 AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPL 121 (142)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSH
T ss_pred EecCCCCCCchHHHHHHHHHHHHHHHHHhhccC-CCeEEEEecCCh
Confidence 621 11 1344456666654 677888888743
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.97 E-value=3.3e-05 Score=65.74 Aligned_cols=99 Identities=11% Similarity=0.101 Sum_probs=64.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHH----Hhhc-ccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETL----DRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~----~~~~-~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|||+|||+|.+|.++|..|+..|. ++.++|+++++.+... .... .....++....+.+++. + +|+|+++
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~-~---adiVvit 76 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLK-G---SEIIVVT 76 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGT-T---CSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhc-c---ccEEEEe
Confidence 699999999999999999998885 6999999998754322 1110 00001355556665433 3 9999988
Q ss_pred cCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
...+. .++++.+.+.++ .+..+++..||-.
T Consensus 77 ag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvtNPv 121 (142)
T d1ojua1 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPM 121 (142)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSH
T ss_pred ccccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEecCCh
Confidence 64211 233333455554 4678898888843
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.91 E-value=2.8e-05 Score=66.09 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=62.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhh----cccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRA----HREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~----~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|||+|||+|.+|.++|..|+.++. ++.++|+++++++...... ..... ......+.++ .+ .+|+|+++.
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~-~~~~~~~~~~-~~---~adivvita 75 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRR-ANIYAGDYAD-LK---GSDVVIVAA 75 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCC-CEEEECCGGG-GT---TCSEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccccccc-ccccCCcHHH-hc---CCCEEEEec
Confidence 699999999999999999998874 7999999988765332211 11100 1222334443 33 399999986
Q ss_pred CCC----h-----------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~----~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
-.+ . .++++.+.+.++. |+.+++..||-.
T Consensus 76 g~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~-p~aivivvtNPv 119 (140)
T d1a5za1 76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPV 119 (140)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred ccccCCCcchhhhhccccchHHHHHHHHHhcC-CCcEEEEeCCcH
Confidence 321 1 1334445565554 677888888754
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.89 E-value=0.0001 Score=62.60 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=64.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHH---hh-cccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLD---RA-HREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~---~~-~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
.||+|||+|.+|.++|..|+..|. ++.++|+++++++.... .. ...+...+....+.++ +++ +|+|+++.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~-~~d---aDvVVita 77 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEI-CRD---ADMVVITA 77 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGG-GTT---CSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHH-hhC---CcEEEEec
Confidence 489999999999999999999986 79999999987543221 11 1110013444555554 333 99999986
Q ss_pred CCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
-... .++++..++.++. ++.+++..||-..
T Consensus 78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPvD 122 (143)
T d1llda1 78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVA-PNAIYMLITNPVD 122 (143)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHH
T ss_pred ccccCCCCchhhhhhhhHHHHHHHHHHHHhhC-CCeEEEEeCCchH
Confidence 3221 2334445666654 5667887877543
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.84 E-value=6.4e-05 Score=63.91 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=65.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-----ccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-----REGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-----~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
+||+|||+|.+|.++|..|+.++. ++.++|+++++.+....... .....++..+.+.+++.. +|+|+++.
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~----advvvita 77 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTAN----SDVIVVTS 77 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTT----CSEEEECC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcC----CCEEEEee
Confidence 589999999999999999998876 89999998876543322110 000113556677777543 99999998
Q ss_pred CCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
..+. .+++++..+.++- +..+++-.||-.
T Consensus 78 g~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~-p~aivivvtNPv 121 (142)
T d1uxja1 78 GAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPL 121 (142)
T ss_dssp SCC---------CHHHHHHHHHHHHHHHGGGC-TTCEEEECSSSH
T ss_pred eccCCcCcchhHHHhHHHHHHHHHHHHHhccC-CCceEEEeCCch
Confidence 4321 2334455666654 566777777643
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.80 E-value=3.9e-05 Score=69.17 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=77.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|+|.|+|.+|..+|+.|.+.|.+|+++|.+++.+......+. . .-+++++... +||+++-|-..+.-.
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~-------~-~~~~~~~~~~--~~DI~iPcA~~~~I~ 97 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGH-------T-AVALEDVLST--PCDVFAPCAMGGVIT 97 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-------E-ECCGGGGGGC--CCSEEEECSCSCCBC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcc-------c-ccCccccccc--cceeeeccccccccc
Confidence 57999999999999999999999999999999998887765442 2 2355666552 489888776554333
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
++.++. + +-++|+...|.. ...+...+.+.++|+.|+.
T Consensus 98 ~~~a~~----i-~ak~i~e~AN~p-~~~~~~~~~L~~rgI~~iP 135 (201)
T d1c1da1 98 TEVART----L-DCSVVAGAANNV-IADEAASDILHARGILYAP 135 (201)
T ss_dssp HHHHHH----C-CCSEECCSCTTC-BCSHHHHHHHHHTTCEECC
T ss_pred HHHHhh----h-hhheeeccCCCC-cchhhHHHHhcccceEEEe
Confidence 333333 3 346888877754 3444556778899998764
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.80 E-value=0.00013 Score=62.11 Aligned_cols=112 Identities=15% Similarity=0.111 Sum_probs=69.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCC---eeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLP---LTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~---i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
.||+|||+ |.+|+++|..|+..|. ++.++|.++.+.+.+--..... ... .....+..+..++ +|+|+++.
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~-~~~~~~~~~~~~~~~~~~~---aDivVita 76 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET-RATVKGYLGPEQLPDCLKG---CDVVVIPA 76 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSS-SCEEEEEESGGGHHHHHTT---CSEEEECC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhh-hcCCCeEEcCCChHHHhCC---CCEEEECC
Confidence 38999995 9999999999999986 6999999877654432111100 001 1122344455555 99999985
Q ss_pred CCC---------------hhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh
Q 010702 81 KAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ 123 (503)
Q Consensus 81 p~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~ 123 (503)
..+ ..++++++.+.++ .+..+|+..||--...+.-..+.+++
T Consensus 77 g~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvD~~t~~~~~~~kk 133 (144)
T d1mlda1 77 GVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVNSTIPITAEVFKK 133 (144)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhHHHHHHHHHH
Confidence 321 1355566777776 56778888877543333333334443
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.78 E-value=0.00017 Score=62.43 Aligned_cols=100 Identities=13% Similarity=0.133 Sum_probs=64.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHh---hc-ccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR---AH-REGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~---~~-~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
..||+|||+|.+|.++|..|+..|. ++.++|+++++++..... .. ..+...+....+.+++. .+|+|+++
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~----~adiVVit 95 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTA----NSKIVVVT 95 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGT----TCSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcc----cccEEEEe
Confidence 3589999999999999999999997 799999998776433211 11 00000223344554433 39999997
Q ss_pred cCCCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 80 VKAGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 80 vp~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.-... .+++++.++.+. .++.+++..||-.
T Consensus 96 Ag~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvtNPv 140 (160)
T d1i0za1 96 AGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNPV 140 (160)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred cCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCch
Confidence 63211 234445566665 4667888888754
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.73 E-value=9.7e-06 Score=71.30 Aligned_cols=85 Identities=9% Similarity=0.251 Sum_probs=58.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK-GFPI-SVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
+||||||+|.||+.++..+.+. ++++ .++|++++.... . ......+.+++.++ +|+|++|+|+..
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~-------~---~~~~~~~~~~~~~~---~D~Vvi~tp~~~ 70 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK-------T---PVFDVADVDKHADD---VDVLFLCMGSAT 70 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS-------S---CEEEGGGGGGTTTT---CSEEEECSCTTT
T ss_pred ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc-------c---ccccchhhhhhccc---cceEEEeCCCcc
Confidence 5899999999999999999875 5664 478988653211 1 23445555555554 999999999975
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st 108 (503)
..+ -..+.|..|.-+|++..
T Consensus 71 h~~----~a~~aL~aG~~vv~~~~ 90 (170)
T d1f06a1 71 DIP----EQAPKFAQFACTVDTYD 90 (170)
T ss_dssp HHH----HHHHHHTTTSEEECCCC
T ss_pred cHH----HHHHHHHCCCcEEEecC
Confidence 433 23344667887776543
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.72 E-value=0.00011 Score=62.49 Aligned_cols=99 Identities=10% Similarity=0.091 Sum_probs=57.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCC--Ceee-eCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQL--PLTG-HYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~--~i~~-~~s~~e~~~~l~~~dvIil~vp 81 (503)
+||+|||+|.+|.++|..|+.+|. ++.++|+++++++.....-.+.... .... ..+.++ ++.+|+|+++..
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~----~~~adivvitag 77 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSD----VKDCDVIVVTAG 77 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGG----GTTCSEEEECCC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHH----hCCCceEEEecc
Confidence 589999999999999999999986 7999999987643322211100000 1222 223333 334999999853
Q ss_pred CCh---------------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AGS---------------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~~---------------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.+. .++++.+.+.++- +..+++..||-.
T Consensus 78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPv 120 (142)
T d1y6ja1 78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNPV 120 (142)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSSH
T ss_pred cccCcCcchhHHhhHHHHHHHHHHHHhhccC-CCceEEEecChH
Confidence 221 1223334555544 566788787743
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.71 E-value=0.00021 Score=60.88 Aligned_cols=99 Identities=15% Similarity=0.075 Sum_probs=63.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHh----hcccCCC-CeeeeCCHHHHHhccCCCcEEEEe
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR----AHREGQL-PLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~----~~~~g~~-~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
+||+|||+|.+|.++|..|+..|. ++.++|+++++.+..... .... .. ......+.+++ ++ +|+||++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~-~~~~~~~~~d~~~l-~~---adiVVit 76 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANL-EAHGNIVINDWAAL-AD---ADVVIST 76 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGS-SSCCEEEESCGGGG-TT---CSEEEEC
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhcccccc-CCccceeccCHHHh-cc---ccEEEEe
Confidence 589999999999999999998874 799999999875433221 1111 01 12334455553 33 9999998
Q ss_pred cCCCh-------------------hHHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 80 VKAGS-------------------PVDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 80 vp~~~-------------------~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
..... .++++...+.++ .++.+++..||-..
T Consensus 77 aG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNPvD 126 (146)
T d1hyha1 77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVISNPVD 126 (146)
T ss_dssp CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH
T ss_pred ccccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCcHH
Confidence 54211 133333455543 47788888888543
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.69 E-value=2.6e-05 Score=68.79 Aligned_cols=102 Identities=14% Similarity=0.142 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCC------Cee------------e-eCCHHHHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQL------PLT------------G-HYTPRDFV 67 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~------~i~------------~-~~s~~e~~ 67 (503)
.+|.|||.|..|..=++-....|-.|+++|+++++.+++.+.+...-.+ ... . ....+.+.
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l~ 109 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVL 109 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999998888765321000 000 0 01122344
Q ss_pred hccCCCcEEEEecCCC-hhHHHHH-HHHHhcCCCCCEEEecCC
Q 010702 68 LSIQRPRSVIILVKAG-SPVDQTI-AALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 68 ~~l~~~dvIil~vp~~-~~v~~vl-~~l~~~l~~g~iIId~st 108 (503)
+.++++|+||.++--+ .....++ +++...+++|.+|||.+-
T Consensus 110 ~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvai 152 (183)
T d1l7da1 110 KELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAV 152 (183)
T ss_dssp HHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred HHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEee
Confidence 4466799999886321 1222223 678888999999999864
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.67 E-value=0.00014 Score=62.87 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=62.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHh----hcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDR----AHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~----~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
.||+|||+|.+|.++|..|+..|. ++.++|+++++++..+.. ....+...+....+.+++ .+ +|+|+++.
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~-~~---adivvita 95 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVS-AN---SKLVIITA 95 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGG-TT---EEEEEECC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhh-cc---ccEEEEec
Confidence 579999999999999999999986 799999998775433211 111000023345565554 33 89999886
Q ss_pred CCCh---------------hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 81 KAGS---------------PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 81 p~~~---------------~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.... .++++...+... .++.+++..||-
T Consensus 96 g~~~~~~~~R~dll~~N~~i~~~i~~~i~~~-~p~~ivivvtNP 138 (159)
T d2ldxa1 96 GARMVSGQTRLDLLQRNVAIMKAIVPGVIQN-SPDCKIIVVTNP 138 (159)
T ss_dssp SCCCCTTTCSSCTTHHHHHHHHHHTTTHHHH-STTCEEEECSSS
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHhcc-CCCeEEEEeCCc
Confidence 3211 122222344443 467788888884
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=97.67 E-value=0.00027 Score=61.79 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=51.0
Q ss_pred CCcEEEEcccHHHHHHHH--HHHhC----CCcEEEEeCChhHHHHHHHh---h-ccc-CCCCeeeeCCHHHHHhccCCCc
Q 010702 6 LSRIGLAGLAVMGQNLAL--NVAEK----GFPISVYNRTTSKVDETLDR---A-HRE-GQLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~--~L~~~----G~~V~v~dr~~~~~~~l~~~---~-~~~-g~~~i~~~~s~~e~~~~l~~~d 74 (503)
.|||+|||+|..|.+++. .++.. +.++.++|+++++++..... . ... ...++..+++.++++.+ +|
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~d---ad 78 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID---AD 78 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---CS
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccC---CC
Confidence 369999999999987543 34432 45899999999876543211 1 000 01257778899998887 99
Q ss_pred EEEEecCC
Q 010702 75 SVIILVKA 82 (503)
Q Consensus 75 vIil~vp~ 82 (503)
+|+.++..
T Consensus 79 ~Vv~~~~~ 86 (171)
T d1obba1 79 FVINTAMV 86 (171)
T ss_dssp EEEECCCT
T ss_pred eEeeeccc
Confidence 99998654
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.64 E-value=0.0002 Score=61.24 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=65.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhh----cccC-CCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA----HREG-QLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~----~~~g-~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
.+||+|||+|.+|.++|..|...+. ++.+||+++++.+...... ...+ ...+....+.+++ ++ +|+|+++
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~-~~---advvvit 78 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDL-AG---ADVVIVT 78 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGG-TT---CSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEeccccccc-CC---CcEEEEe
Confidence 3589999999999999998888875 7999999987654432211 0000 0123444455554 33 9999998
Q ss_pred cCCCh--------------------hHHHHHHHHHhcCCCCCEEEecCCCChhhH
Q 010702 80 VKAGS--------------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNT 114 (503)
Q Consensus 80 vp~~~--------------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t 114 (503)
.-... .++++.+.+.+. .++.+|+..||--...+
T Consensus 79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvtNPvD~~t 132 (150)
T d1t2da1 79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVTNPVDVMV 132 (150)
T ss_dssp CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSHHHHH
T ss_pred cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchHHHH
Confidence 64211 233444556555 46788888888543333
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.61 E-value=9.4e-05 Score=63.94 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=59.6
Q ss_pred CcEEEEcccHHHHH-HHHHHHhCC-CcE-EEEeCChhHH-HHHHHhhcccCCCCee-eeCCHHHHHhc--cCCCcEEEEe
Q 010702 7 SRIGLAGLAVMGQN-LALNVAEKG-FPI-SVYNRTTSKV-DETLDRAHREGQLPLT-GHYTPRDFVLS--IQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIGlG~mG~~-lA~~L~~~G-~~V-~v~dr~~~~~-~~l~~~~~~~g~~~i~-~~~s~~e~~~~--l~~~dvIil~ 79 (503)
.||||||+|.+|.. +...|.... .++ .+.+|+++.. ..+.+.. ++. ...+.+++.+. .++.|+|+++
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~------~i~~~~~~~d~l~~~~~~~~iDiVf~A 78 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM------GVTTTYAGVEGLIKLPEFADIDFVFDA 78 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT------TCCEESSHHHHHHHSGGGGGEEEEEEC
T ss_pred cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhc------CCcccccceeeeeecccccccCEEEEc
Confidence 58999999999986 556665554 344 4668887532 2333322 122 34456666543 2247999999
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
+|.+.++... .....++.|..|||.|.
T Consensus 79 Tpag~h~~~~--~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 79 TSASAHVQNE--ALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp SCHHHHHHHH--HHHHHHCTTCEEEECST
T ss_pred CCchhHHHhH--HHHHHHHcCCEEEEccc
Confidence 9987554432 22334578999999987
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.61 E-value=0.00027 Score=65.11 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=74.3
Q ss_pred CCcEEEEcccHHH----HHHHHHHHhC--CCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 6 LSRIGLAGLAVMG----QNLALNVAEK--GFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 6 ~~~IgIIGlG~mG----~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
..||||||+|.+| ......+.+. +++|. ++|+++++.+++.+..... ....++++++++++ ++.|+|++
T Consensus 16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~-~~iD~V~i 91 (237)
T d2nvwa1 16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLK---HATGFDSLESFAQY-KDIDMIVV 91 (237)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCT---TCEEESCHHHHHHC-TTCSEEEE
T ss_pred CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccc---cceeecchhhcccc-cccceeec
Confidence 3589999998744 4445556543 56755 7999999988887654221 24567899999875 34799999
Q ss_pred ecCCChhHHHHHHHHHhcC--CCC-CEEEec--CCCChhhHHHHHHHHHhcC
Q 010702 79 LVKAGSPVDQTIAALSEHM--SPG-DCIIDG--GNEWYLNTERRIHEASQKG 125 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l--~~g-~iIId~--st~~~~~t~~~~~~l~~~g 125 (503)
++|+....+.+...+.... ..+ .++++- +. ...+.+++.+..++++
T Consensus 92 ~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~-~~~e~~~l~~~a~~~~ 142 (237)
T d2nvwa1 92 SVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAA-SVQQAEELYSISQQRA 142 (237)
T ss_dssp CSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSS-SHHHHHHHHHHHHTCT
T ss_pred cCCCcchhhHHHHHHHhcccccCCceEEEeccccC-CHHHHHHHHHHHhhcC
Confidence 9998766555555444321 122 466652 22 3445666666665553
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.54 E-value=0.00013 Score=62.86 Aligned_cols=89 Identities=11% Similarity=0.010 Sum_probs=70.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
+++.|+|.|..|+++|+++...|-+|+++++||-+.-+..-.| ++ ..+.++++.. +|++|.++....
T Consensus 24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdG-------f~-v~~~~~a~~~---aDi~vTaTGn~~-- 90 (163)
T d1v8ba1 24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEG-------FN-VVTLDEIVDK---GDFFITCTGNVD-- 90 (163)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTT-------CE-ECCHHHHTTT---CSEEEECCSSSS--
T ss_pred CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcC-------Cc-cCchhHcccc---CcEEEEcCCCCc--
Confidence 4799999999999999999999999999999996644433332 33 4688888887 999999987743
Q ss_pred HHHH-HHHHhcCCCCCEEEecCCCC
Q 010702 87 DQTI-AALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 87 ~~vl-~~l~~~l~~g~iIId~st~~ 110 (503)
++ .+-...++.|.||.+.+.-.
T Consensus 91 --vI~~~h~~~MKdgaIl~N~GHfd 113 (163)
T d1v8ba1 91 --VIKLEHLLKMKNNAVVGNIGHFD 113 (163)
T ss_dssp --SBCHHHHTTCCTTCEEEECSSTT
T ss_pred --cccHHHHHHhhCCeEEEeccccc
Confidence 33 44456788999999887654
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.54 E-value=3.2e-05 Score=67.99 Aligned_cols=114 Identities=21% Similarity=0.152 Sum_probs=72.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|.|+|+|-++++++..|.+.+-+|++++|++++.+.+.+.....+ .+....... ..+..+|+||-|+|.+..
T Consensus 19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~--~~~~~~~~~---~~~~~~diiIN~tp~g~~- 92 (171)
T d1p77a1 19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG--NIQAVSMDS---IPLQTYDLVINATSAGLS- 92 (171)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS--CEEEEEGGG---CCCSCCSEEEECCCC----
T ss_pred CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc--ccchhhhcc---ccccccceeeeccccccc-
Confidence 57999999999999999999988899999999999998877543221 222222111 124458999999998732
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCcc
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLL 127 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~ 127 (503)
..........++++.+++|..=..|..| .+.+..++.|..
T Consensus 93 ~~~~~~~~~~~~~~~~~~D~vy~~p~~T-~~l~~A~~~g~~ 132 (171)
T d1p77a1 93 GGTASVDAEILKLGSAFYDMQYAKGTDT-PFIALCKSLGLT 132 (171)
T ss_dssp ----CCCHHHHHHCSCEEESCCCTTSCC-HHHHHHHHTTCC
T ss_pred ccccchhhhhhcccceeeeeeccCcccH-HHHHHHHHcCCC
Confidence 1111111112346788888864445444 334445566653
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.53 E-value=0.0001 Score=64.39 Aligned_cols=112 Identities=19% Similarity=0.149 Sum_probs=75.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|.|+|+|-.+++++..|.+.|.+|++++|++++.+++.+.....+ .+.. .+..+.. ...+|+||-|+|.+..
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~--~~~~-~~~~~~~--~~~~dliIN~Tp~G~~- 92 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG--SIQA-LSMDELE--GHEFDLIINATSSGIS- 92 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS--SEEE-CCSGGGT--TCCCSEEEECCSCGGG-
T ss_pred CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc--cccc-ccccccc--ccccceeecccccCcc-
Confidence 57999999999999999999999999999999999998887543321 2222 2333321 2348999999987632
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCc
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGL 126 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi 126 (503)
.+...--...+.++.+++|.--... .| .+.+..+++|.
T Consensus 93 ~~~~~~~~~~~~~~~~v~D~vY~P~-~T-~ll~~A~~~G~ 130 (170)
T d1nyta1 93 GDIPAIPSSLIHPGIYCYDMFYQKG-KT-PFLAWCEQRGS 130 (170)
T ss_dssp TCCCCCCGGGCCTTCEEEESCCCSS-CC-HHHHHHHHTTC
T ss_pred cCCCCCcHHHhccCcEEEEeecCCC-CC-HHHHHHHHcCC
Confidence 1111001234678899999865443 33 34445566665
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.53 E-value=9.1e-05 Score=60.65 Aligned_cols=104 Identities=19% Similarity=0.152 Sum_probs=77.7
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
++|+|||+ +..|..+.++|.+.||+|...+.+.+.+ . +...+.+++|+-+. +|++++++|.
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i---------~---G~~~y~sl~~lp~~---~D~vvi~vp~ 66 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI---------E---GLKCYRSVRELPKD---VDVIVFVVPP 66 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE---------T---TEECBSSGGGSCTT---CCEEEECSCH
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc---------c---Cccccccchhcccc---ceEEEEEeCH
Confidence 46999994 7899999999999999988887654321 1 36778888887665 8999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
..+.++++++...- ...+++..++.. +++.+.+++.|+.+++.
T Consensus 67 -~~~~~~l~~~~~~g-~k~v~~~~g~~~----~~~~~~a~~~gi~vigp 109 (116)
T d1y81a1 67 -KVGLQVAKEAVEAG-FKKLWFQPGAES----EEIRRFLEKAGVEYSFG 109 (116)
T ss_dssp -HHHHHHHHHHHHTT-CCEEEECTTSCC----HHHHHHHHHHTCEEECS
T ss_pred -HHHHHHHHHHHhcC-CceEEeccchhh----HHHHHHHHHcCCEEEcC
Confidence 47888888776643 346777665543 34566777889988763
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.47 E-value=0.00019 Score=60.19 Aligned_cols=108 Identities=17% Similarity=0.027 Sum_probs=78.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcc--
Q 010702 325 VDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVV-- 402 (503)
Q Consensus 325 ~~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~-- 402 (503)
.|+|+.+|.++|.+.++.+++++|++.+.++.. +|.+.+.++-+.| --+|+.++.........+. .++.
T Consensus 2 ~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~G------ld~~~~~eil~~~-~g~s~~~~~~~~~~~~~~~--~~~~~~ 72 (134)
T d3cuma1 2 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANG------LEAKVLAEIMRRS-SGGNWALEVYNPWPGVMEN--APASRD 72 (134)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------CCHHHHHHHHHTS-TTCCHHHHHCCCSTTSSTT--SGGGGT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHhc-ccchhhhhhhhhhhhccch--hhhcCC
Confidence 478999999999999999999999999988643 9999999999977 3578887653211111110 0110
Q ss_pred -hhhHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010702 403 -DPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (503)
Q Consensus 403 -~~~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~ 443 (503)
++.|. +.-...+++-+...|-+.|+|+|....+...|..
T Consensus 73 ~~~~f~--~~l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~~ 112 (134)
T d3cuma1 73 YSGGFM--AQLMAKDLGLAQEAAQASASSTPMGSLALSLYRL 112 (134)
T ss_dssp TCSSSB--HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred CCCCcc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 11121 2234456788899999999999999999987654
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.41 E-value=0.00053 Score=58.19 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=30.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF--PISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~ 40 (503)
|||+|||+ |.+|.++|..|+..|. ++.++|++++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~ 37 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence 68999995 9999999999999984 8999999864
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.38 E-value=0.002 Score=53.47 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=80.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHHHHhcCCCCCCCcchhh
Q 010702 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPE 405 (503)
Q Consensus 326 ~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~~~~~~~~~~~ll~~~~ 405 (503)
|+|+-+|.++|.+.+..+++++|++.+..++ ++|.+++.++.+.|. -+|..++.....+-+++.. +.
T Consensus 3 G~g~~~Kl~nN~l~~~~~~~~aEal~la~~~------Gid~~~~~~~l~~~~-~~S~~~~~~~~~~~~~~~~------~~ 69 (133)
T d1vpda1 3 GAGNVTKLANQVIVALNIAAMSEALTLATKA------GVNPDLVYQAIRGGL-AGSTVLDAKAPMVMDRNFK------PG 69 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTST-TCCHHHHHHHHHHHTTCCC------CS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhcc-ccchhhhhccchhhhccCC------CC
Confidence 7889999999999999999999999998854 399999999999873 5788887755544333211 22
Q ss_pred HhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 010702 406 FAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDT 443 (503)
Q Consensus 406 ~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~~ 443 (503)
|.- .-...+++-+...|-+.|+|+|....+..+|..
T Consensus 70 f~~--~l~~KDl~l~~~~a~~~~~~~p~~~~~~~~~~~ 105 (133)
T d1vpda1 70 FRI--DLHIKDLANALDTSHGVGAQLPLTAAVMEMMQA 105 (133)
T ss_dssp SBH--HHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred chH--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 322 223456788899999999999999999997764
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=9.8e-05 Score=66.28 Aligned_cols=72 Identities=17% Similarity=0.281 Sum_probs=51.3
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
|+||.|+| .|.+|+.++..|+++||+|.++.|++++.......+. .+.. ..+.+++.+.++.+|+||.++..
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~-----~~~~gD~~d~~~l~~al~~~d~vi~~~g~ 77 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPA-----HVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCS-----EEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccccccc-----ccccccccchhhHHHHhcCCCEEEEEecc
Confidence 46899999 6999999999999999999999999987543322211 1111 12445555555668988888753
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.28 E-value=0.0017 Score=56.04 Aligned_cols=95 Identities=13% Similarity=0.093 Sum_probs=60.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee---eCCHHHHHhcc-----CCCcEEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG---HYTPRDFVLSI-----QRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~---~~s~~e~~~~l-----~~~dvIil 78 (503)
.+|.|+|+|.+|...++.+...|.+|.+.|+++++.+.+.+.+... .+.. ..+..+..+.+ ..+|+||.
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~---~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid 104 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADV---TLVVDPAKEEESSIIERIRSAIGDLPNVTID 104 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSE---EEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcE---EEeccccccccchhhhhhhcccccCCceeee
Confidence 4699999999999999999999999999999999988777655321 0111 11222222211 23678887
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
++.... .++.....+.++-.|+-.+.
T Consensus 105 ~~g~~~----~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 105 CSGNEK----CITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp CSCCHH----HHHHHHHHSCTTCEEEECSC
T ss_pred cCCChH----HHHHHHHHHhcCCceEEEec
Confidence 776532 23333344555555555443
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.28 E-value=0.0016 Score=55.05 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=59.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHh-CC--CcEEEEeCChhHHHHHHHhhcccCCCC---eeeeCCHHHHHhccCCCcEEEEe
Q 010702 7 SRIGLAG-LAVMGQNLALNVAE-KG--FPISVYNRTTSKVDETLDRAHREGQLP---LTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~-~G--~~V~v~dr~~~~~~~l~~~~~~~g~~~---i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|||+||| .|.+|.++|..|+. .+ .++.++|+.+.......+......... +....+.++ .++ +|+||++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~-~~~---aDvvvit 76 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPA-LEG---ADVVLIS 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHH-HTT---CSEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccc-cCC---CCEEEEC
Confidence 6999999 59999999998864 34 689999987643222222110000001 112333443 444 9999998
Q ss_pred cCCC---------------hhHHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 80 VKAG---------------SPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 80 vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
.-.+ ..++++.+++.++- ++.+|+..||-..
T Consensus 77 aG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~-p~aivivvtNPvD 122 (145)
T d2cmda1 77 AGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPVN 122 (145)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHH
T ss_pred CCccCCCCcchhhHHHHHHHHHHHHHHHHHhhC-CCcEEEEccCCch
Confidence 6321 12455566777765 5677888877543
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.26 E-value=0.00022 Score=68.86 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=72.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhC-C-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK-G-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+++|||+|.++...+..|... . .+|.+|+|++++.+.+.+..... .+....++++.+.. +|+|+.+++...
T Consensus 126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~---~~~~~~~~~~a~~~---aDiV~taT~s~~ 199 (320)
T d1omoa_ 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDR---GISASVQPAEEASR---CDVLVTTTPSRK 199 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHT---TCCEEECCHHHHTS---SSEEEECCCCSS
T ss_pred cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhc---CCccccchhhhhcc---ccEEEEeccCcc
Confidence 4699999999999998887753 3 37999999999998887764432 34556677777776 999999998765
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
++ +. ...+++|..|+..++..|.
T Consensus 200 P~---~~--~~~l~~G~hv~~iGs~~p~ 222 (320)
T d1omoa_ 200 PV---VK--AEWVEEGTHINAIGADGPG 222 (320)
T ss_dssp CC---BC--GGGCCTTCEEEECSCCSTT
T ss_pred cc---cc--hhhcCCCCeEeecCCcccc
Confidence 42 21 2468899999988876553
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=0.0016 Score=55.33 Aligned_cols=116 Identities=11% Similarity=0.164 Sum_probs=69.1
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCC-eeeeCCHHHHHh--ccCCCcEEEEecCCCh
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLP-LTGHYTPRDFVL--SIQRPRSVIILVKAGS 84 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~-i~~~~s~~e~~~--~l~~~dvIil~vp~~~ 84 (503)
.|-|+|.|.+|..++..|.+.|++|++.+.++++.....+.....+ .. +.+..+-.++.+ .++++|.||++++++.
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~-~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~ 83 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDN-ADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA 83 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTT-CEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCC-cEEEEccCcchHHHHHhccccCCEEEEccccHH
Confidence 5889999999999999999999999999999876544443321111 01 122223334433 3567999999998864
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
....++..+....+.-.+|+-..+. .. ...+...|+.++=
T Consensus 84 ~n~~~~~~~r~~~~~~~iia~~~~~--~~----~~~l~~~Gad~vi 123 (153)
T d1id1a_ 84 DNAFVVLSAKDMSSDVKTVLAVSDS--KN----LNKIKMVHPDIIL 123 (153)
T ss_dssp HHHHHHHHHHHHTSSSCEEEECSSG--GG----HHHHHTTCCSEEE
T ss_pred HHHHHHHHHHHhCCCCceEEEEcCH--HH----HHHHHHCCCCEEE
Confidence 3322222222322333566554442 22 2334555765553
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.00017 Score=56.41 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=31.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
.+||.|+|+|..|.+.|+.|.+.|.+|++||.++.
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 46899999999999999999999999999997653
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=97.18 E-value=0.00039 Score=53.83 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=45.8
Q ss_pred CcEEEEcccHHHH-HHHHHHHhCCCcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 7 SRIGLAGLAVMGQ-NLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIGlG~mG~-~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
|||=|||.|-+|. +||+.|.++|+.|+++|+.+ +.+++|.+.|. .+....+.+. +..+|+||..
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi-----~i~~gh~~~~----i~~~d~vV~S 67 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGI-----PIFVPHSADN----WYDPDLVIKT 67 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTC-----CEESSCCTTS----CCCCSEEEEC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCC-----eEEeeecccc----cCCCCEEEEe
Confidence 6899999999994 89999999999999999887 45666666553 1222223222 3347887765
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.18 E-value=0.00021 Score=62.33 Aligned_cols=114 Identities=12% Similarity=0.059 Sum_probs=68.3
Q ss_pred CcCCCCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 2 EASALSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 2 ~~~~~~~IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
..+.+++|||||+|.||...+..|.+.. ..+.+++....+ ++ ... ......+.+++++. ++.|+|+++
T Consensus 3 ~~~~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~---~~~----~~~~~~~~~e~l~~-~~iD~V~I~ 72 (172)
T d1lc0a1 3 TNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--EL---GSL----DEVRQISLEDALRS-QEIDVAYIC 72 (172)
T ss_dssp CCCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CC---CEE----TTEEBCCHHHHHHC-SSEEEEEEC
T ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HH---HHh----hccCcCCHHHHHhC-CCcchhhhc
Confidence 3444568999999999999988887543 234444432221 01 111 11235588998874 447999999
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEec-CCCChhhHHHHHHHHHhcCccE
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDG-GNEWYLNTERRIHEASQKGLLY 128 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~-st~~~~~t~~~~~~l~~~gi~~ 128 (503)
+|+....+-+.. .++. .-.++++- -.....+.+++.+..++.|..+
T Consensus 73 tp~~~H~~~~~~-al~~--gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~ 119 (172)
T d1lc0a1 73 SESSSHEDYIRQ-FLQA--GKHVLVEYPMTLSFAAAQELWELAAQKGRVL 119 (172)
T ss_dssp SCGGGHHHHHHH-HHHT--TCEEEEESCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred cccccccccccc-cccc--chhhhcCCCccccHHHHHHHHHHHHHcCCeE
Confidence 999766543333 3332 12466662 1234567777777777777644
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=0.00026 Score=62.43 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=75.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHh---hcccCCC--CeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDR---AHREGQL--PLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~---~~~~g~~--~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
++|.|||+|-+|++++..|.+.|. +++++||++++.+++... ....... .+....+.+++.+.+..+|+||-++
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~T 98 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGT 98 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceecccc
Confidence 579999999999999999999997 689999998876654321 1100000 1122234444444444599999999
Q ss_pred CCChhH--HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 81 KAGSPV--DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 81 p~~~~v--~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
|.+..- .+.+..-...++++.+++|..-. |..| .+.+..++.|..+++
T Consensus 99 p~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~-p~~T-~ll~~a~~~g~~~i~ 148 (182)
T d1vi2a1 99 KVGMKPLENESLVNDISLLHPGLLVTECVYN-PHMT-KLLQQAQQAGCKTID 148 (182)
T ss_dssp STTSTTSCSCCSCCCGGGSCTTCEEEECCCS-SSSC-HHHHHHHTTTCEEEC
T ss_pred CCccccccchhhhhHHHhhhcchhhHHhhcC-cccc-HHHHHHHHCcCeEec
Confidence 875220 01110012347788999999643 3344 334445666776664
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.09 E-value=0.00062 Score=57.33 Aligned_cols=103 Identities=14% Similarity=0.076 Sum_probs=76.8
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
++|+|||+ +..|..++.+|.++||+|+..|...+.+ . +...+.+++++-.. .|++++++|.
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i---------~---G~~~~~sl~dlp~~---iD~v~i~vp~ 84 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV---------L---GRKCYPSVLDIPDK---IEVVDLFVKP 84 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE---------T---TEECBSSGGGCSSC---CSEEEECSCH
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc---------C---CCcccccccccCcc---ceEEEEEeCH
Confidence 46999996 5799999999999999988887653211 1 36678888887665 8999999998
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
..+.++++++... ....+++..+... ++..+.+++.|+.+++
T Consensus 85 -~~~~~~~~e~~~~-g~k~v~~~~G~~~----ee~~~~a~~~gi~vig 126 (139)
T d2d59a1 85 -KLTMEYVEQAIKK-GAKVVWFQYNTYN----REASKKADEAGLIIVA 126 (139)
T ss_dssp -HHHHHHHHHHHHH-TCSEEEECTTCCC----HHHHHHHHHTTCEEEE
T ss_pred -HHHHHHHHHHHHh-CCCEEEEeccccC----HHHHHHHHHCCCEEEc
Confidence 5788888887764 3445666555543 3455667778988886
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.09 E-value=0.00071 Score=61.82 Aligned_cols=109 Identities=13% Similarity=0.145 Sum_probs=79.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++|.|-|.|.+|..+|+.|.+.|..|.+.|.++..++.+..... .. ..+++++... +||+++-|--.+.-.
T Consensus 40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g------~~-~~~~~~~~~~--~cDIl~PcA~~~~I~ 110 (230)
T d1leha1 40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEG------AD-AVAPNAIYGV--TCDIFAPCALGAVLN 110 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC------CE-ECCGGGTTTC--CCSEEEECSCSCCBS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcC------Cc-ccCCcccccc--cccEecccccccccC
Confidence 57999999999999999999999999999999999888776532 22 3455665542 499999887665333
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
++.+.. +. =++|+...|..+.+ .+..+.|.++|+.|+.
T Consensus 111 ~~~~~~----l~-ak~Ive~ANn~~t~-~ea~~~L~~rGI~~iP 148 (230)
T d1leha1 111 DFTIPQ----LK-AKVIAGSADNQLKD-PRHGKYLHELGIVYAP 148 (230)
T ss_dssp TTHHHH----CC-CSEECCSCSCCBSS-HHHHHHHHHHTCEECC
T ss_pred hHHhhc----cC-ccEEEecccCCCCC-chHHHHHHhhCcEEEe
Confidence 333333 32 36888888666543 3556778899998774
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.03 E-value=0.0015 Score=56.27 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=49.6
Q ss_pred CcEEEEcccHHHHHHHHHHH-h--C---CCcEEEEeCChhHHHHHHHhhc--ccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVA-E--K---GFPISVYNRTTSKVDETLDRAH--REGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~-~--~---G~~V~v~dr~~~~~~~l~~~~~--~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
|||+|||+|..|.+++.... . + +.++.++|+++++.+...+... ......+....+..+.+++ +|+|++
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~---aDvVVi 77 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVD---AKYVIF 77 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTT---CSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCC---CCEEEE
Confidence 68999999999887774422 1 1 3589999999998764432110 0001145666777777776 999999
Q ss_pred ecCCC
Q 010702 79 LVKAG 83 (503)
Q Consensus 79 ~vp~~ 83 (503)
+.-.+
T Consensus 78 ta~~~ 82 (162)
T d1up7a1 78 QFRPG 82 (162)
T ss_dssp CCCTT
T ss_pred ecccC
Confidence 87543
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.02 E-value=0.0053 Score=50.72 Aligned_cols=102 Identities=10% Similarity=0.120 Sum_probs=76.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHhCCCcchhhhHHHHHH-HHhcCCCCCCCcchh
Q 010702 326 DKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIWKGGCIIRAVFLDRIKK-AYQRNPNLASLVVDP 404 (503)
Q Consensus 326 ~~~~~vk~v~~ai~~~~~~~~aqg~~ll~~~~~~~~w~l~l~~i~~iW~~Gcii~s~lL~~i~~-~~~~~~~~~~ll~~~ 404 (503)
|+|+-+|.+.|.+..+.++.++|++.+-++. ++|++++.++.+.| --+|..++.... ....++ .+ +
T Consensus 2 G~g~~~Kl~nN~l~~~~~~~~aEal~la~~~------Gld~~~~~~vl~~s-~~~s~~~~~~~p~~~~~~~-~~-----~ 68 (132)
T d2cvza1 2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQ------GVSAEKALEVINAS-SGRSNATENLIPQRVLTRA-FP-----K 68 (132)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTS-TTCBHHHHHTHHHHTTTSC-CC-----C
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhh-hhhhhhhhhhhhHHHHHHh-hh-----h
Confidence 6788999999999999999999999998854 39999999999876 346777665332 222221 11 2
Q ss_pred hHhHHHHhhhhHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010702 405 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFD 442 (503)
Q Consensus 405 ~~~~~~~~~~~~~r~~v~~a~~~gvp~P~~saal~y~~ 442 (503)
.|. +.-...+++-+...|-+.|+|+|....+...|.
T Consensus 69 ~f~--~~~~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~ 104 (132)
T d2cvza1 69 TFA--LGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYE 104 (132)
T ss_dssp SSB--HHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred hhH--HHHHhhHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 222 223445678889999999999999999988664
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.00 E-value=0.00022 Score=59.42 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=71.3
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGL----AVMGQNLALNVAEKG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGl----G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.+|+|||+ |.+|..+.++|.+.| ++|+..+...+.+ . +...+.|+.|+-.. .|++++++|
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i---------~---G~~~y~sl~dlp~~---vDlvvi~vp 73 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV---------Q---GVKAYKSVKDIPDE---IDLAIIVVP 73 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE---------T---TEECBSSTTSCSSC---CSEEEECSC
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc---------C---CeEeecchhhcCCC---CceEEEecC
Confidence 46999996 899999999998776 6888888764321 1 36778888887665 899999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCCh-hhH----HHHHHHHHhcCccEec
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWY-LNT----ERRIHEASQKGLLYLG 130 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~-~~t----~~~~~~l~~~gi~~i~ 130 (503)
. ..+.++++++...--+..+++..+-... ..- +++.+...+.|+++++
T Consensus 74 ~-~~~~~~~~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~G 126 (129)
T d2csua1 74 K-RFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG 126 (129)
T ss_dssp H-HHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred h-HHhHHHHHHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCEEeC
Confidence 8 5788888887765333333332211111 111 2233344555777764
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=97.00 E-value=0.002 Score=55.77 Aligned_cols=110 Identities=12% Similarity=0.125 Sum_probs=68.7
Q ss_pred CCcEEEEcccHHHHHHH--HHHHh-CC---CcEEEEeCChhHHHHHHH---hhc-ccC-CCCeeeeCCHHHHHhccCCCc
Q 010702 6 LSRIGLAGLAVMGQNLA--LNVAE-KG---FPISVYNRTTSKVDETLD---RAH-REG-QLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA--~~L~~-~G---~~V~v~dr~~~~~~~l~~---~~~-~~g-~~~i~~~~s~~e~~~~l~~~d 74 (503)
..||+|||.|..|.+.+ ..|.. .. -+|.++|.++++++.... ... ..+ ..++....+..|.+++ +|
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~---AD 79 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD---VD 79 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS---CS
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCC---CC
Confidence 35899999999887643 22322 22 379999999998763221 110 000 1246677888888877 99
Q ss_pred EEEEecCCCh-----------------------------------hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHH
Q 010702 75 SVIILVKAGS-----------------------------------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIH 119 (503)
Q Consensus 75 vIil~vp~~~-----------------------------------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~ 119 (503)
+||++.-.+. .++++++.+.+. .|+.+++..||-....+..+.+
T Consensus 80 ~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~-~P~A~li~~TNPvdv~t~~~~k 158 (167)
T d1u8xx1 80 FVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY-SPDAWMLNYSNPAAIVAEATRR 158 (167)
T ss_dssp EEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSCHHHHHHHHHH
T ss_pred EEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHHHHHHHH
Confidence 9999975421 133344455454 4788999998865544544443
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.99 E-value=0.00096 Score=52.34 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=46.2
Q ss_pred CCcEEEEcccHHH-HHHHHHHHhCCCcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGLAVMG-QNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGlG~mG-~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
.++|-|||.|-.| ++||+.|.+.||+|+++|+.. ..++.+.+.|. .+......+. +.+ +|+||..
T Consensus 8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi-----~v~~g~~~~~-i~~---~d~vV~S 74 (96)
T d1p3da1 8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGA-----KIYIGHAEEH-IEG---ASVVVVS 74 (96)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTC-----EEEESCCGGG-GTT---CSEEEEC
T ss_pred CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCC-----eEEECCcccc-CCC---CCEEEEC
Confidence 4689999999999 778999999999999999863 44666666543 1333233332 333 7877765
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.99 E-value=0.00077 Score=58.46 Aligned_cols=110 Identities=12% Similarity=0.117 Sum_probs=70.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.++|.|||+|-++++++..|.+.|. +|++++|++++.+.+.+... .....+.. ..++|+||-|+|-+-
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~------~~~~~~~~-----~~~~DliINaTpiGm 85 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG------YAYINSLE-----NQQADILVNVTSIGM 85 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT------CEEESCCT-----TCCCSEEEECSSTTC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhh------hhhhhccc-----ccchhhheeccccCC
Confidence 3579999999999999999999997 79999999999988876532 12222221 123899999998541
Q ss_pred h--HHH---HHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 85 P--VDQ---TIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 85 ~--v~~---vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
. .++ .+.. ..++++.+|+|.--.. ..| .+.+..+++|...++
T Consensus 86 ~~~~~~~~l~~~~--~~~~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~i~ 132 (167)
T d1npya1 86 KGGKEEMDLAFPK--AFIDNASVAFDVVAMP-VET-PFIRYAQARGKQTIS 132 (167)
T ss_dssp TTSTTTTSCSSCH--HHHHHCSEEEECCCSS-SSC-HHHHHHHHTTCEEEC
T ss_pred ccccccccccccH--hhcCCcceEEEEeecc-CCC-HHHHHHHHCCCeEEE
Confidence 0 000 0000 1133567888875443 333 234555666665543
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.00078 Score=57.16 Aligned_cols=96 Identities=11% Similarity=0.151 Sum_probs=55.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCC-C---cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKG-F---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G-~---~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|+||||||+ |.+|+-+.+.|.++. | ++..+.++........... .. .......+..++ .. +|++|+|+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~-~~--~~~~~~~~~~~~-~~---~DivF~a~ 73 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGG-TT--GTLQDAFDLEAL-KA---LDIIVTCQ 73 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGT-CC--CBCEETTCHHHH-HT---CSEEEECS
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccC-Cc--eeeecccchhhh-hc---CcEEEEec
Confidence 458999996 999999998777653 3 4555554433211111000 00 011222233333 44 99999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
|.+ ........+... ..+.+|||.|+.+
T Consensus 74 ~~~-~s~~~~~~~~~~-g~~~~VID~Ss~f 101 (146)
T d1t4ba1 74 GGD-YTNEIYPKLRES-GWQGYWIDAASSL 101 (146)
T ss_dssp CHH-HHHHHHHHHHHT-TCCCEEEECSSTT
T ss_pred Cch-HHHHhhHHHHhc-CCCeecccCCccc
Confidence 985 455555555442 2346899999864
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.95 E-value=0.0017 Score=56.74 Aligned_cols=95 Identities=20% Similarity=0.320 Sum_probs=59.0
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-cEEEE-eCCh-h-HHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGF-PISVY-NRTT-S-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~-~V~v~-dr~~-~-~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
|+||||+|+ |..|.-|.+.|.++-+ ++... .++. . ++.......... ......+++++.++ +|++++++
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~---~~~~~~~~~~~~~~---~dvvf~a~ 74 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLEN---SILSEFDPEKVSKN---CDVLFTAL 74 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCC---CBCBCCCHHHHHHH---CSEEEECC
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhcc---ccccccCHhHhccc---cceEEEcc
Confidence 569999995 9999999999998753 44433 3322 1 122221111110 11223466677666 99999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
|.+.. .+ +.+.. .+..|||.|+..--
T Consensus 75 p~~~s-~~----~~~~~-~~~~VIDlSadfRl 100 (176)
T d1vkna1 75 PAGAS-YD----LVREL-KGVKIIDLGADFRF 100 (176)
T ss_dssp STTHH-HH----HHTTC-CSCEEEESSSTTTC
T ss_pred ccHHH-HH----HHHhh-ccceEEecCccccc
Confidence 99743 22 33333 68899999987643
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.95 E-value=0.0023 Score=52.87 Aligned_cols=86 Identities=17% Similarity=0.255 Sum_probs=57.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEE-EeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
|||+|+|+ |.||+.++..+.+.|+++.. +|++.. ..+..+|+||=-..+ .
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~---------------------------~~~~~~DVvIDFS~p-~ 52 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV---------------------------EELDSPDVVIDFSSP-E 52 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE---------------------------EECSCCSEEEECSCG-G
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH---------------------------HHhccCCEEEEecCH-H
Confidence 68999995 99999999999999998763 453311 112238988876655 3
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHh
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQ 123 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~ 123 (503)
.+.+.++.... .+.-+|-+||+...+..+..+.+.+
T Consensus 53 ~~~~~l~~~~~---~~~p~ViGTTG~~~~~~~~i~~~ak 88 (128)
T d1vm6a3 53 ALPKTVDLCKK---YRAGLVLGTTALKEEHLQMLRELSK 88 (128)
T ss_dssp GHHHHHHHHHH---HTCEEEECCCSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh---cCCCEEEEcCCCCHHHHHHHHHHHh
Confidence 56666655543 4566788888876655555555443
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.93 E-value=0.002 Score=53.04 Aligned_cols=95 Identities=13% Similarity=0.129 Sum_probs=62.5
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHh--ccCCCcEEEEecCCChh
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVL--SIQRPRSVIILVKAGSP 85 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~--~l~~~dvIil~vp~~~~ 85 (503)
.|-|+|.|.+|..++..| .|++|.+.+.+++..+.+...+... +.+..+-.+... .+.+++.++++.+++..
T Consensus 2 HivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~~~~~~----i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~ 75 (129)
T d2fy8a1 2 HVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKVLRSGANF----VHGDPTRVSDLEKANVRGARAVIVNLESDSE 75 (129)
T ss_dssp CEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHHHHTTCEE----EESCTTSHHHHHHTTCTTCSEEEECCSSHHH
T ss_pred EEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHHHhcCccc----cccccCCHHHHHHhhhhcCcEEEEeccchhh
Confidence 477999999999999998 4778999999999988887665321 223333345543 36679999999887543
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
...++..+...-+.-.+++-..+
T Consensus 76 n~~~~~~~r~~~~~~~iia~~~~ 98 (129)
T d2fy8a1 76 TIHCILGIRKIDESVRIIAEAER 98 (129)
T ss_dssp HHHHHHHHHHHCSSSCEEEECSS
T ss_pred hHHHHHHHHHHCCCceEEEEEcC
Confidence 33333333333333356665544
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.0027 Score=54.80 Aligned_cols=95 Identities=14% Similarity=0.180 Sum_probs=64.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhcc-----CCCcEEEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSI-----QRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l-----~~~dvIil 78 (503)
.+|.|+|+|.+|...++.+...|. +|.+.|+++++.+...+.|... +.. ..++.+..+.+ ..+|+||.
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~----~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADL----VLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE----EEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcc----cccccccccccccccccccCCCCceEEEe
Confidence 369999999999999999999998 6999999999988777655421 111 23444433321 23789999
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++.... .++.....+.++..++-.+..
T Consensus 104 ~~G~~~----~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 104 CTGAEA----SIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp CSCCHH----HHHHHHHHSCTTCEEEECSCC
T ss_pred ccCCch----hHHHHHHHhcCCCEEEEEecC
Confidence 987643 344445556666655555543
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.89 E-value=0.0054 Score=53.03 Aligned_cols=107 Identities=13% Similarity=0.016 Sum_probs=65.5
Q ss_pred CcEEEEcccHHHH--HHHHHHHhC-C---CcEEEEeCChhH--HHHHHHhh---c-cc-CCCCeeeeCCHHHHHhccCCC
Q 010702 7 SRIGLAGLAVMGQ--NLALNVAEK-G---FPISVYNRTTSK--VDETLDRA---H-RE-GQLPLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 7 ~~IgIIGlG~mG~--~lA~~L~~~-G---~~V~v~dr~~~~--~~~l~~~~---~-~~-g~~~i~~~~s~~e~~~~l~~~ 73 (503)
+||+|||+|..|. .++..+... . -++.++|+++++ .+.+-... . .. ...++...++..+..++ +
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~g---a 78 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG---A 78 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---C
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCC---C
Confidence 6899999997764 444444432 2 389999998854 32221100 0 00 01145667788777776 9
Q ss_pred cEEEEecCCChh-----------------------------------HHHHHHHHHhcCCCCCEEEecCCCChhhHHHH
Q 010702 74 RSVIILVKAGSP-----------------------------------VDQTIAALSEHMSPGDCIIDGGNEWYLNTERR 117 (503)
Q Consensus 74 dvIil~vp~~~~-----------------------------------v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~ 117 (503)
|+|+++...+.. +++++..+..+ .|+.+++..||-....+...
T Consensus 79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~-~pda~~i~vtNPvdv~t~~~ 156 (169)
T d1s6ya1 79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTNPAGMVTEAV 156 (169)
T ss_dssp SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHH
T ss_pred CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhc-CCCeEEEEeCChHHHHHHHH
Confidence 999999865421 34455566554 57889999888644444333
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=96.88 E-value=0.00098 Score=64.49 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=72.8
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE-KG-FPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+++|||+|.++...+..+.. .+ -+|.+|+|++++.+++.++-....++.+..+.+++++++. +|+|+.|+++..
T Consensus 129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~---ADIi~t~Tas~s 205 (340)
T d1x7da_ 129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKG---VDIITTVTADKA 205 (340)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTT---CSEEEECCCCSS
T ss_pred ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhc---CCceeeccccCC
Confidence 579999999999988887754 34 3799999999999988865432212356789999999998 999999886531
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
...++. ...+++|..|.-.++-.|.
T Consensus 206 -~~Pv~~--~~~l~pG~hI~aiGs~~p~ 230 (340)
T d1x7da_ 206 -YATIIT--PDMLEPGMHLNAVGGDCPG 230 (340)
T ss_dssp -EEEEEC--GGGCCTTCEEEECSCCBTT
T ss_pred -CCcccc--hhhcCCCCEEeecccchhh
Confidence 111221 1457899988888776553
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.86 E-value=0.0029 Score=53.90 Aligned_cols=99 Identities=14% Similarity=0.175 Sum_probs=60.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEE--eCChhHHHHHHHhhcccCC---CCeeeeCCHHHHHhccCCC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF-------PISVY--NRTTSKVDETLDRAHREGQ---LPLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~-------~V~v~--dr~~~~~~~l~~~~~~~g~---~~i~~~~s~~e~~~~l~~~ 73 (503)
+||+|||+ |.+|.++|..|+..+. ...++ +++.++.+........... ..+....+..+..++ +
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---a 81 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD---A 81 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---C
T ss_pred CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccc---c
Confidence 48999996 9999999999998663 12334 3444444433221110000 035566667766666 9
Q ss_pred cEEEEecCC----C-----------hhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 74 RSVIILVKA----G-----------SPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 74 dvIil~vp~----~-----------~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
|+||++--. + ..++++...+..+.+++.+|+-.||
T Consensus 82 dvViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN 131 (154)
T d1y7ta1 82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN 131 (154)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred cEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 999998621 1 1234444566666666777777776
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.83 E-value=0.0067 Score=50.85 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=58.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCC--cEEEEeCCh--hHHH----HHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEE
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGF--PISVYNRTT--SKVD----ETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~--~V~v~dr~~--~~~~----~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIi 77 (503)
.||+||| .|.+|.++|..|...|. ++.++|++. +..+ ++...........+ ...+.+++. .+|+|+
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i-~~~~~~~~~----~aDiVv 75 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRV-RQGGYEDTA----GSDVVV 75 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEE-EECCGGGGT----TCSEEE
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceE-eeCCHHHhh----hcCEEE
Confidence 3899999 69999999999999986 699999753 2222 22211111110122 234555543 399999
Q ss_pred EecCC----Ch-----------hHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 78 ILVKA----GS-----------PVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 78 l~vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++.-. +. .++++.+.+..+- ++.+++..||-.
T Consensus 76 itaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~-p~~i~ivvtNPv 122 (142)
T d1o6za1 76 ITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNPV 122 (142)
T ss_dssp ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSSH
T ss_pred EecccccccCCchhhHHHHHHHHHHHHHHHHHhcC-CCceEEEecChH
Confidence 88531 11 1333445555544 567888777743
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.0032 Score=54.18 Aligned_cols=93 Identities=11% Similarity=0.168 Sum_probs=65.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
.+|.|+|+|.+|...++.+...|.++.+.++++++.+.+.+.+... +.-..+........+..|++|.++.....+
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~----~i~~~~~~~~~~~~~~~D~vid~~g~~~~~ 107 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADE----VVNSRNADEMAAHLKSFDFILNTVAAPHNL 107 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSE----EEETTCHHHHHTTTTCEEEEEECCSSCCCH
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcE----EEECchhhHHHHhcCCCceeeeeeecchhH
Confidence 4699999999999999888899999999999999887776665431 223344444444445689999999876444
Q ss_pred HHHHHHHHhcCCCCCEEEecC
Q 010702 87 DQTIAALSEHMSPGDCIIDGG 107 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~s 107 (503)
+.. ...+.++-.++..+
T Consensus 108 ~~~----~~~l~~~G~iv~~G 124 (168)
T d1uufa2 108 DDF----TTLLKRDGTMTLVG 124 (168)
T ss_dssp HHH----HTTEEEEEEEEECC
T ss_pred HHH----HHHHhcCCEEEEec
Confidence 443 34555555555554
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.78 E-value=0.00083 Score=57.00 Aligned_cols=95 Identities=16% Similarity=0.185 Sum_probs=54.7
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCC-C---cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKG-F---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G-~---~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
|||||||+ |..|.-|.+.|.++. | ++..+..+... .......... ..+....+.+. .+. +|+||+|+|
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~-gk~~~~~~~~--~~~~~~~~~~~-~~~---~DvvF~alp 73 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG-VPAPNFGKDA--GMLHDAFDIES-LKQ---LDAVITCQG 73 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS-SBCCCSSSCC--CBCEETTCHHH-HTT---CSEEEECSC
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc-ccccccCCcc--eeeecccchhh-hcc---ccEEEEecC
Confidence 68999985 999999998877643 3 34444322211 0000000000 01112223333 344 999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
++ ...++...+... ..+.+|||.|+.+
T Consensus 74 ~~-~s~~~~~~l~~~-g~~~~VIDlSsdf 100 (147)
T d1mb4a1 74 GS-YTEKVYPALRQA-GWKGYWIDAASTL 100 (147)
T ss_dssp HH-HHHHHHHHHHHT-TCCSEEEESSSTT
T ss_pred ch-HHHHHhHHHHHc-CCceEEEeCCccc
Confidence 86 556666666552 2346899999865
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=96.76 E-value=0.00073 Score=56.62 Aligned_cols=105 Identities=10% Similarity=0.090 Sum_probs=78.4
Q ss_pred CcEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGL----AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
++|+|||+ +..|..+..+|.+.||++..++.++.. + . .. +...+.++.++-.. .|++++++|+
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~-~----~--i~---g~~~~~~l~~i~~~---iD~v~v~~p~ 80 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQG-E----E--LF---GEEAVASLLDLKEP---VDILDVFRPP 80 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTT-S----E--ET---TEECBSSGGGCCSC---CSEEEECSCH
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEecccc-c----e--ee---ceecccchhhccCC---CceEEEeccH
Confidence 46999997 789999999999999999999876531 0 0 11 35677888877654 8999999997
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
..+.++++++... ....+++..+... ++..+.+++.|+.++.
T Consensus 81 -~~v~~~v~~~~~~-g~k~i~~q~G~~~----~e~~~~a~~~Gi~vV~ 122 (136)
T d1iuka_ 81 -SALMDHLPEVLAL-RPGLVWLQSGIRH----PEFEKALKEAGIPVVA 122 (136)
T ss_dssp -HHHTTTHHHHHHH-CCSCEEECTTCCC----HHHHHHHHHTTCCEEE
T ss_pred -HHHHHHHHHHHhh-CCCeEEEecCccC----HHHHHHHHHcCCEEEc
Confidence 5778888777654 3456777665543 3556777888998885
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.73 E-value=0.0044 Score=52.72 Aligned_cols=100 Identities=13% Similarity=0.025 Sum_probs=62.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChhH--HHHHHHh---hcccCCCCeeeeCCHHHHHhccCC
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VDETLDR---AHREGQLPLTGHYTPRDFVLSIQR 72 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~~~l~~~---~~~~g~~~i~~~~s~~e~~~~l~~ 72 (503)
-+||+|||+ |.+|.++|..|+..+. ++.++|.+... .+.+.-. ........+....+..+..++
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 79 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKD--- 79 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTT---
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCC---
Confidence 369999995 9999999999986542 47778876543 3333211 110000035566777777776
Q ss_pred CcEEEEecCCC---------------hhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 73 PRSVIILVKAG---------------SPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 73 ~dvIil~vp~~---------------~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
+|+||++-..+ ..++++...+..+.++..++|..||
T Consensus 80 ~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsN 130 (154)
T d5mdha1 80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (154)
T ss_dssp CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecC
Confidence 99999986321 1244555666666655555666666
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.70 E-value=0.0002 Score=62.90 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=72.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCC---eeeeCCHHHHHhccCCCcEEEEecCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLP---LTGHYTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~---i~~~~s~~e~~~~l~~~dvIil~vp~ 82 (503)
.++|-|||.|-++++++..|.+.| +|++++|++++.+.+.+......... .....++.. .+..+|+||.|+|.
T Consensus 18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~dliIn~tp~ 93 (177)
T d1nvta1 18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDV---DLDGVDIIINATPI 93 (177)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTC---CCTTCCEEEECSCT
T ss_pred CCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhh---ccchhhhhccCCcc
Confidence 357999999999999999998777 89999999999888765432100000 011122222 23348999999987
Q ss_pred ChhHHHHHHHH--HhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 83 GSPVDQTIAAL--SEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 83 ~~~v~~vl~~l--~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+..-....... ...+.++.+++|..-.... | .+.+..++.|...++
T Consensus 94 g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~-T-~l~~~a~~~G~~~i~ 141 (177)
T d1nvta1 94 GMYPNIDVEPIVKAEKLREDMVVMDLIYNPLE-T-VLLKEAKKVNAKTIN 141 (177)
T ss_dssp TCTTCCSSCCSSCSTTCCSSSEEEECCCSSSS-C-HHHHHHHTTTCEEEC
T ss_pred cccccccccchhhhhccCcccceeeecCCcHh-H-HHHHHHHHCCCcccC
Confidence 53111000000 1235678899998654433 3 334445666766554
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.63 E-value=0.00083 Score=56.87 Aligned_cols=93 Identities=13% Similarity=0.041 Sum_probs=55.3
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCC---cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGF---PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.|+|||||+ |..|.-|.+.|.+++| ++.....+...-+.+.... . .........+.... +|++++++|
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~-~----~~~~~~~~~~~~~~---~d~vf~a~p 73 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAE-S----SLRVGDVDSFDFSS---VGLAFFAAA 73 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETT-E----EEECEEGGGCCGGG---CSEEEECSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeecc-c----cchhccchhhhhcc---ceEEEecCC
Confidence 369999996 9999999999987665 5555433322111110000 0 11111111222333 999999998
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
.+ ...+....+. .+|.+|||.|+..
T Consensus 74 ~~-~s~~~~~~~~---~~g~~VID~Ss~f 98 (144)
T d2hjsa1 74 AE-VSRAHAERAR---AAGCSVIDLSGAL 98 (144)
T ss_dssp HH-HHHHHHHHHH---HTTCEEEETTCTT
T ss_pred cc-hhhhhccccc---cCCceEEeechhh
Confidence 85 4454544443 4789999998865
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.58 E-value=0.0026 Score=55.61 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=58.9
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhC-CCcEE-EEeCCh-----hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEE
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEK-GFPIS-VYNRTT-----SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI 77 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~-G~~V~-v~dr~~-----~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIi 77 (503)
|+||+||| .|..|.-|.+.|..+ .+++. ++.++. ++.............+......+....... .|+++
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~dvvf 77 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSAD---VDVVF 77 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTT---CCEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcc---cceee
Confidence 57999999 599999999999998 45664 343221 112221111100000112233333333333 89999
Q ss_pred EecCCChhHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 78 ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 78 l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
+|+|++ ...+....+. ..+..|||.|...-.
T Consensus 78 ~alp~~-~s~~~~~~~~---~~~~~vIDlSadfRl 108 (179)
T d2g17a1 78 LATAHE-VSHDLAPQFL---QAGCVVFDLSGAFRV 108 (179)
T ss_dssp ECSCHH-HHHHHHHHHH---HTTCEEEECSSTTSS
T ss_pred ccccch-hHHHHhhhhh---hcCceeecccccccc
Confidence 999985 3444444443 478999999987643
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.57 E-value=0.00098 Score=60.56 Aligned_cols=33 Identities=30% Similarity=0.531 Sum_probs=31.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
+||.|||.|.+|.+.|..|+++|++|++++|+.
T Consensus 7 ~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999864
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.41 E-value=0.0021 Score=55.93 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=60.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhcc---CCCcEEEEecC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSI---QRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~~~~l---~~~dvIil~vp 81 (503)
.+|.|+|+|.+|...++.+...|. +|++.|+++++.+...+.|... -+.. ..++.+.+.++ ...|+||.++.
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~---~i~~~~~~~~~~v~~~t~g~G~D~vid~~g 105 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATD---ILNYKNGHIEDQVMKLTNGKGVDRVIMAGG 105 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSE---EECGGGSCHHHHHHHHTTTSCEEEEEECSS
T ss_pred CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccc---cccccchhHHHHHHHHhhccCcceEEEccC
Confidence 469999999999999999988996 7999999999988777665421 0100 12233333322 22688888887
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGG 107 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~s 107 (503)
....+++.+ ..+.++..++..+
T Consensus 106 ~~~~~~~a~----~~~~~~G~iv~~G 127 (174)
T d1jqba2 106 GSETLSQAV----KMVKPGGIISNIN 127 (174)
T ss_dssp CTTHHHHHH----HHEEEEEEEEECC
T ss_pred CHHHHHHHH----HHHhcCCEEEEEe
Confidence 654344333 3344555555554
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.41 E-value=0.013 Score=50.85 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=37.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA 49 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~ 49 (503)
.+|.|+|+|.+|...++.+...|. +|++.|+++++.+.+.+.|
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lG 73 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIG 73 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEECCCccchhheeccccccccccccccccccccccccccc
Confidence 469999999999999999999997 7999999999987766554
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.31 E-value=0.0056 Score=56.49 Aligned_cols=84 Identities=14% Similarity=0.288 Sum_probs=58.9
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCC
Q 010702 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKA 82 (503)
Q Consensus 7 ~~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~ 82 (503)
+||++| | .+-+|..+|+.|++.|++|.+.+|++++.+++.++.... . .+++.+ =+.+
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~----------------g---~~~~~~~~Dv~~ 61 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA----------------G---GHAVAVKVDVSD 61 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTS
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEeeCCC
Confidence 478777 5 577999999999999999999999999887766532111 0 223322 2345
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
...++++++.+.....+=|++|+....
T Consensus 62 ~~~v~~~~~~~~~~~g~iDilVnnAG~ 88 (255)
T d1gega_ 62 RDQVFAAVEQARKTLGGFDVIVNNAGV 88 (255)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCccEEEecccc
Confidence 556777888777766666788876543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.22 E-value=0.0065 Score=56.07 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=58.3
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCC
Q 010702 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (503)
Q Consensus 8 ~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~ 83 (503)
||++| |.+-+|.++|+.|++.|++|.+.+|+++++++..++-... . .++..+. +.+.
T Consensus 3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~----------------g---~~~~~~~~Dvs~~ 63 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA----------------G---VEADGRTCDVRSV 63 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEeecCCH
Confidence 78888 5678999999999999999999999998887766532110 0 2233222 3455
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
..++.+++.+.....+=+++|++..
T Consensus 64 ~~v~~~~~~~~~~~g~iDilVnnAG 88 (257)
T d2rhca1 64 PEIEALVAAVVERYGPVDVLVNNAG 88 (257)
T ss_dssp HHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEeccc
Confidence 6778888887776655678887644
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.22 E-value=0.00088 Score=57.95 Aligned_cols=95 Identities=14% Similarity=0.228 Sum_probs=58.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhc-cCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLS-IQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~-l~~~dvIil~vp~~~~ 85 (503)
.+|.|+|+|.+|...++.+...|.+|++.|+++++.+.+.+.|... +....+..+..+. ....|+++.++.....
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~----~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~ 104 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADH----YIATLEEGDWGEKYFDTFDLIVVCASSLTD 104 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSE----EEEGGGTSCHHHHSCSCEEEEEECCSCSTT
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcE----EeeccchHHHHHhhhcccceEEEEecCCcc
Confidence 4799999999999988888888999999999999998887766432 1111222222222 2235777777654321
Q ss_pred HHHHHHHHHhcCCCCCEEEecC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGG 107 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~s 107 (503)
. .++.....+.++-.++..+
T Consensus 105 ~--~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 105 I--DFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp C--CTTTGGGGEEEEEEEEECC
T ss_pred c--hHHHHHHHhhccceEEEec
Confidence 1 1223334444444444444
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.19 E-value=0.0084 Score=51.93 Aligned_cols=38 Identities=13% Similarity=0.356 Sum_probs=29.4
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCC-CcE-EEEeCChhHH
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKG-FPI-SVYNRTTSKV 42 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G-~~V-~v~dr~~~~~ 42 (503)
|++||||.|.|++|+.+.+.+.+.. .+| .+.|.++...
T Consensus 1 M~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~ 40 (172)
T d2czca2 1 MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFE 40 (172)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHH
T ss_pred CcEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHH
Confidence 4579999999999999999998754 454 4667776543
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.01 Score=54.32 Aligned_cols=81 Identities=12% Similarity=0.260 Sum_probs=58.0
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+.|| | .+-+|.++|+.|++.|++|.+.+|++++++++.++... . +..+..=+.+..+
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~-----------------~---~~~~~~Dv~~~~~ 64 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGA-----------------N---GKGLMLNVTDPAS 64 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG-----------------G---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCC-----------------C---CcEEEEEecCHHH
Confidence 67777 5 68899999999999999999999999988877654211 1 1222222445567
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
++++++.+.....+=+++|+...
T Consensus 65 v~~~~~~~~~~~g~iDilVnnAg 87 (243)
T d1q7ba_ 65 IESVLEKIRAEFGEVDILVNNAG 87 (243)
T ss_dssp HHHHHHHHHHHTCSCSEEEECCC
T ss_pred hhhhhhhhhcccCCcceehhhhh
Confidence 78888888776666678887654
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.17 E-value=0.0099 Score=51.77 Aligned_cols=37 Identities=8% Similarity=0.226 Sum_probs=28.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEEE-EeCChhHH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-FPISV-YNRTTSKV 42 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~~V~v-~dr~~~~~ 42 (503)
|-||||.|.|++|+.+++.+.++. ++|.. .|+++...
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~ 39 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYE 39 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHH
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHH
Confidence 348999999999999999999764 56554 56666543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.008 Score=55.09 Aligned_cols=84 Identities=10% Similarity=0.114 Sum_probs=60.4
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEE--EecCCC
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVI--ILVKAG 83 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIi--l~vp~~ 83 (503)
|+.+| | .+-+|..+|..|+++|++|.+.+|++++++++.++.... . .++.. .=+.+.
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~----------------~---~~~~~~~~Dvs~~ 68 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL----------------G---AKVHTFVVDCSNR 68 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEeeCCCH
Confidence 56666 5 467999999999999999999999999888776542110 1 23333 334555
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
..++.+++.+.....+=+++|++....
T Consensus 69 ~~v~~~~~~i~~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 69 EDIYSSAKKVKAEIGDVSILVNNAGVV 95 (244)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCCceeEeecccc
Confidence 567778888877777778888876653
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.12 E-value=0.013 Score=45.64 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=61.5
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhh
Q 010702 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDK 262 (503)
Q Consensus 183 ~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~ 262 (503)
.+.++|++.|.+.+.-++.++|.+.++++.| +|..++.+++.. ......++. .+...-.|++. -+-||
T Consensus 3 ~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g-~d~~~v~~~~~~-d~ri~~~~~------~~~pG~G~GG~----ClpKD 70 (98)
T d1mv8a1 3 VAEMIKYTCNVWHAAKVTFANEIGNIAKAVG-VDGREVMDVICQ-DHKLNLSRY------YMRPGFAFGGS----CLPKD 70 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHHTT-CTTTTTSST------TCSCCSCCCSS----SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHhc-Ccccccccc------ccCCcccCCcc----ccchh
Confidence 5789999999999999999999999999998 999999998731 110011111 01111124332 23344
Q ss_pred cCCcchHHHHHHHHHHcCCCcchHHHHH
Q 010702 263 TGMKGTGKWTVQQAAELSVAAPTIAASL 290 (503)
Q Consensus 263 ~~~kgtG~~~~~~A~~~gvp~p~~~~Av 290 (503)
.. .....|.+.|++.+++.++.
T Consensus 71 ~~------al~~~a~~~~~~~~ll~~~~ 92 (98)
T d1mv8a1 71 VR------ALTYRASQLDVEHPMLGSLM 92 (98)
T ss_dssp HH------HHHHHHHHTTCCCTTGGGHH
T ss_pred HH------HHHHHHHHcCCChHHHHHHH
Confidence 32 45678899999999988764
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.12 E-value=0.0094 Score=52.33 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=36.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 48 (503)
++|-|.| .|-+|..+|+.|++.|.+|.+.+|++++.+++.+.
T Consensus 24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~ 66 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADS 66 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHH
Confidence 4677777 69999999999999999999999999988777654
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.00 E-value=0.015 Score=53.25 Aligned_cols=83 Identities=10% Similarity=0.107 Sum_probs=58.3
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
-|+.+| | .+-+|..+|+.|++.|++|.+.+|++++.+++.++... . +..+-.=+.+..
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~~~~ 65 (244)
T d1nffa_ 6 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD-----------------A---ARYVHLDVTQPA 65 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG-----------------G---EEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhC-----------------c---ceEEEeecCCHH
Confidence 366666 5 58899999999999999999999999988777654211 1 111212244556
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++++++++.....+=+++|++...
T Consensus 66 ~v~~~~~~~~~~~g~idilinnAG~ 90 (244)
T d1nffa_ 66 QWKAAVDTAVTAFGGLHVLVNNAGI 90 (244)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCeEEEECCcc
Confidence 7788887777665566788877654
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.99 E-value=0.012 Score=47.07 Aligned_cols=88 Identities=14% Similarity=0.040 Sum_probs=54.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHhhcccCCCCeeee---CCHHHHHhccCCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK-VDETLDRAHREGQLPLTGH---YTPRDFVLSIQRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~i~~~---~s~~e~~~~l~~~dvIil~vp~ 82 (503)
.+|.|||.|.+|..-|+.|.+.|.+|++++..... ...+.+.+ +++.. .+.++ +..+++|+.+..+
T Consensus 13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~------~i~~~~~~~~~~d----l~~~~lv~~at~d 82 (113)
T d1pjqa1 13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEG------MLTLVEGPFDETL----LDSCWLAIAATDD 82 (113)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTT------SCEEEESSCCGGG----GTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcC------CceeeccCCCHHH----hCCCcEEeecCCC
Confidence 58999999999999999999999999999876543 33333322 12221 22233 3338888887666
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
. .+..-+..... +..+.|+...
T Consensus 83 ~-~~n~~i~~~a~---~~~ilVNv~D 104 (113)
T d1pjqa1 83 D-TVNQRVSDAAE---SRRIFCNVVD 104 (113)
T ss_dssp H-HHHHHHHHHHH---HTTCEEEETT
T ss_pred H-HHHHHHHHHHH---HcCCEEEeCC
Confidence 4 45443333322 2345565443
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=95.99 E-value=0.038 Score=47.70 Aligned_cols=103 Identities=13% Similarity=0.086 Sum_probs=63.9
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChhH--HHHHHHh---hcccCCCCeeeeCCHHHHHhccCCCc
Q 010702 8 RIGLAGL-AVMGQNLALNVAEKGF-------PISVYNRTTSK--VDETLDR---AHREGQLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 8 ~IgIIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~~~l~~~---~~~~g~~~i~~~~s~~e~~~~l~~~d 74 (503)
||.|+|+ |.+|.+++.+|+.... .+.++|.+... ++.+.-+ ........+...++..+..++ +|
T Consensus 26 kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~---aD 102 (175)
T d7mdha1 26 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFED---VD 102 (175)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---CS
T ss_pred EEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccC---Cc
Confidence 6999996 9999999999997532 56677876642 2322211 110000034566777777776 99
Q ss_pred EEEEecCCC----h-----------hHHHHHHHHHhcCCCCCEEEecCCCChhhHH
Q 010702 75 SVIILVKAG----S-----------PVDQTIAALSEHMSPGDCIIDGGNEWYLNTE 115 (503)
Q Consensus 75 vIil~vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~st~~~~~t~ 115 (503)
+||++--.+ . .++++.+.+.++.+++.+|+-.|| |-++.
T Consensus 103 vVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~ 156 (175)
T d7mdha1 103 WALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTN 156 (175)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHH
T ss_pred eEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHH
Confidence 999986221 1 134444666676666777777777 44443
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.91 E-value=0.0028 Score=58.12 Aligned_cols=34 Identities=12% Similarity=0.270 Sum_probs=31.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|+|.|||.|.-|...|..|+++|++|+++++++.
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 34 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 6899999999999999999999999999998753
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.91 E-value=0.0079 Score=49.88 Aligned_cols=96 Identities=15% Similarity=0.125 Sum_probs=66.3
Q ss_pred CCcEEEEccc----------HHHHHHHHHHHhCCCcEEEEeCChhHH-------HHHHHhhcccCCCCeeeeCCHHHHHh
Q 010702 6 LSRIGLAGLA----------VMGQNLALNVAEKGFPISVYNRTTSKV-------DETLDRAHREGQLPLTGHYTPRDFVL 68 (503)
Q Consensus 6 ~~~IgIIGlG----------~mG~~lA~~L~~~G~~V~v~dr~~~~~-------~~l~~~~~~~g~~~i~~~~s~~e~~~ 68 (503)
..||+|+|+- .-...++..|.+.|.+|.+||..-+.. +.+....... ....+.++.+++.
T Consensus 13 ~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~i~ 89 (136)
T d1mv8a3 13 TRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHV---SSLLVSDLDEVVA 89 (136)
T ss_dssp CCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHH---HTTBCSCHHHHHH
T ss_pred CCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccc---cceeehhhhhhhh
Confidence 3589999984 467789999999999999999632211 1111110000 1245689999999
Q ss_pred ccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 69 SIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 69 ~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
. +|+||++++.. ..++ +...+.++.+|+|+-+..+.
T Consensus 90 ~---~D~ivi~t~h~-~f~~----l~~~~~~~~~I~D~~~~~~~ 125 (136)
T d1mv8a3 90 S---SDVLVLGNGDE-LFVD----LVNKTPSGKKLVDLVGFMPH 125 (136)
T ss_dssp H---CSEEEECSCCG-GGHH----HHHSCCTTCEEEESSSCCSS
T ss_pred h---ceEEEEEeCCH-HHHH----HHHHhcCCCEEEECCCCCCh
Confidence 8 99999999986 3333 44456678999999887653
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.90 E-value=0.0078 Score=55.35 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=58.2
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCC
Q 010702 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (503)
Q Consensus 7 ~~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~ 82 (503)
-||++| | .+-+|..+|+.|+++|++|.+.+|++++++++.++.... . .++..+. +.+
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~----------------g---~~~~~~~~Dvt~ 70 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF----------------G---YESSGYAGDVSK 70 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT----------------T---CCEEEEECCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCC
Confidence 478877 5 578999999999999999999999999887766542111 0 2222222 345
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
..+++.+++++.....+=|++|+...
T Consensus 71 ~~~v~~~~~~~~~~~g~iDilvnnag 96 (251)
T d2c07a1 71 KEEISEVINKILTEHKNVDILVNNAG 96 (251)
T ss_dssp HHHHHHHHHHHHHHCSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhcCCceeeeeccc
Confidence 56777888887776656677877543
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.008 Score=51.56 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=56.4
Q ss_pred CcEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAV-MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||-+. +|.+||..|.+.|.+|++++... .++.+...+ +|+||.++.....
T Consensus 38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t---------------------~~l~~~~~~---ADivI~a~G~p~~ 93 (166)
T d1b0aa1 38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------------------KNLRHHVEN---ADLLIVAVGKPGF 93 (166)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------------------SCHHHHHHH---CSEEEECSCCTTC
T ss_pred ceEEEEeccccccHHHHHHHHHhhcccccccccc---------------------chhHHHHhh---hhHhhhhccCccc
Confidence 5799999765 99999999999999999997543 234445555 9999999976533
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++ ...+++|.+|||.+..
T Consensus 94 i~------~~~vk~g~vvIDvGi~ 111 (166)
T d1b0aa1 94 IP------GDWIKEGAIVIDVGIN 111 (166)
T ss_dssp BC------TTTSCTTCEEEECCCE
T ss_pred cc------ccccCCCcEEEecCce
Confidence 22 2367899999999865
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.84 E-value=0.017 Score=49.12 Aligned_cols=44 Identities=9% Similarity=0.217 Sum_probs=38.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH 50 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~ 50 (503)
.+|.|+|+|.+|...++.+...|.+|.+.++++++.+.+.+.|.
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga 72 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA 72 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc
Confidence 46999999999999999999999999999999999887776553
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.014 Score=53.55 Aligned_cols=80 Identities=10% Similarity=0.185 Sum_probs=56.6
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+.+| | .+-+|.++|+.|++.|++|.+.||++++.+++.++... +..+..=+.+...
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~---------------------~~~~~~Dvs~~~~ 65 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPG---------------------AVFILCDVTQEDD 65 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT---------------------EEEEECCTTSHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCC---------------------CeEEEccCCCHHH
Confidence 55555 5 58999999999999999999999999888777654210 1122222445567
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
++++++++.....+=+++|+...
T Consensus 66 v~~~~~~~~~~~g~iDilVnnAG 88 (250)
T d1ydea1 66 VKTLVSETIRRFGRLDCVVNNAG 88 (250)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHhcCCCCEEEeccc
Confidence 78888777766555578887654
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=95.75 E-value=0.0059 Score=52.41 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=65.2
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHH-HHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecC
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEK-GFPIS-VYNRTTSKV-DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~-~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp 81 (503)
.+||+|+|+ |.||+.+++.+.+. ++++. +++|..... ..-.......+...+....+++++.+. +|+||-...
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~---~DViIDFs~ 80 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDD---FDVFIDFTR 80 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTS---CSEEEECSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcc---cceEEEecc
Confidence 368999995 99999999988765 56654 566653321 000000000001135566777776665 999987765
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHH
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEAS 122 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~ 122 (503)
+ ..+.+.++... ..+.-+|-+||+......+..+.+.
T Consensus 81 p-~~~~~~~~~a~---~~~~~~ViGTTG~~~~~~~~i~~~a 117 (162)
T d1diha1 81 P-EGTLNHLAFCR---QHGKGMVIGTTGFDEAGKQAIRDAA 117 (162)
T ss_dssp H-HHHHHHHHHHH---HTTCEEEECCCCCCHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHH---hccceeEEecCCCcHHHHHHHHHHc
Confidence 5 35555554433 3567788888887554444444433
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=95.75 E-value=0.025 Score=52.01 Aligned_cols=82 Identities=16% Similarity=0.261 Sum_probs=56.8
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCC
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~ 83 (503)
|+.+| | .+-+|.++|+.|++.|++|.+.||++++++++.+..... . .++..+. +.+.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~----------------g---~~~~~~~~Dv~~~ 66 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK----------------G---VEARSYVCDVTSE 66 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------T---SCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCCH
Confidence 55565 5 577999999999999999999999998887766532110 0 2333332 3455
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
..++++++.+.....+=+++|+...
T Consensus 67 ~~v~~~~~~~~~~~g~iDilVnnaG 91 (260)
T d1zema1 67 EAVIGTVDSVVRDFGKIDFLFNNAG 91 (260)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCeehhhhc
Confidence 6778888777766555578887644
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=95.74 E-value=0.0032 Score=57.42 Aligned_cols=34 Identities=29% Similarity=0.558 Sum_probs=31.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
+||.|||.|.-|..+|..|+++|++|++++++++
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 5899999999999999999999999999998754
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=95.73 E-value=0.015 Score=53.69 Aligned_cols=85 Identities=13% Similarity=0.206 Sum_probs=56.9
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
++-|.| .+-+|.++|+.|++.|++|.+.+|++++++++.+.....+ .. +..+..=+.+...+
T Consensus 8 ~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~--------------~~---~~~~~~D~s~~~~~ 70 (258)
T d1ae1a_ 8 TALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--------------LN---VEGSVCDLLSRTER 70 (258)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CC---EEEEECCTTCHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CC---ceEEEeecCCHHHH
Confidence 455556 6889999999999999999999999988777665421110 00 12222334455667
Q ss_pred HHHHHHHHhcC-CCCCEEEecCCC
Q 010702 87 DQTIAALSEHM-SPGDCIIDGGNE 109 (503)
Q Consensus 87 ~~vl~~l~~~l-~~g~iIId~st~ 109 (503)
+++++++.... .+-+++|++...
T Consensus 71 ~~~~~~~~~~~~g~idilinnag~ 94 (258)
T d1ae1a_ 71 DKLMQTVAHVFDGKLNILVNNAGV 94 (258)
T ss_dssp HHHHHHHHHHTTSCCCEEEECCCC
T ss_pred HHHHHHHHHHhCCCcEEEeccccc
Confidence 77777777665 355777775443
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=95.72 E-value=0.015 Score=53.70 Aligned_cols=83 Identities=11% Similarity=0.208 Sum_probs=56.8
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCC
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~ 83 (503)
|++|| | .+-+|..+|+.|++.|++|.+.+|++++++++.++.... . .++..+. +.+.
T Consensus 9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~----------------g---~~~~~~~~Dv~~~ 69 (259)
T d2ae2a_ 9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK----------------G---FKVEASVCDLSSR 69 (259)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CEEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CCceEEEeeCCCH
Confidence 56666 5 578999999999999999999999999887776542111 0 2222222 3444
Q ss_pred hhHHHHHHHHHhcCC-CCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMS-PGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~-~g~iIId~st~ 109 (503)
..++++++++...+. +=+++|+....
T Consensus 70 ~~v~~~~~~~~~~~~~~idilvnnAG~ 96 (259)
T d2ae2a_ 70 SERQELMNTVANHFHGKLNILVNNAGI 96 (259)
T ss_dssp HHHHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCceEEEECCce
Confidence 567777777766654 45788876543
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=95.70 E-value=0.018 Score=52.92 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=54.9
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+.+| | .+-+|.++|+.|++.|++|.+.+|++++.+++.++... . +..+..=+.+...
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~~~~~ 65 (254)
T d1hdca_ 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGD-----------------A---ARYQHLDVTIEED 65 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGG-----------------G---EEEEECCTTCHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-----------------c---eEEEEcccCCHHH
Confidence 44444 5 57899999999999999999999999887776653210 1 1122222344556
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++++++.+.....+=+++|++...
T Consensus 66 v~~~~~~~~~~~g~iDilVnnAg~ 89 (254)
T d1hdca_ 66 WQRVVAYAREEFGSVDGLVNNAGI 89 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCccEEEecCcc
Confidence 777777776655555677776543
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.012 Score=50.68 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=57.5
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|.|||-+ .+|.+||..|++.|..|++++.... ++.+...+ +|+||.++....-
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~---------------------~l~~~~~~---aDivi~a~G~~~~ 95 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA---------------------HLDEEVNK---GDILVVATGQPEM 95 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS---------------------SHHHHHTT---CSEEEECCCCTTC
T ss_pred ceEEEEecCCccchHHHHHHHhccCceEEEecccc---------------------cHHHHHhh---ccchhhccccccc
Confidence 579999975 5999999999999999999986532 33444444 9999999987643
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
++ ...+++|.+|||.+....
T Consensus 96 i~------~~~vk~g~iviDvgi~~~ 115 (170)
T d1a4ia1 96 VK------GEWIKPGAIVIDCGINYV 115 (170)
T ss_dssp BC------GGGSCTTCEEEECCCBC-
T ss_pred cc------cccccCCCeEeccCcccc
Confidence 22 246889999999987653
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=95.68 E-value=0.017 Score=53.75 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=56.4
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+.+| | .+-+|.++|+.|++.|++|.+.+|++++++++.++.. .. +..+..=+.+...
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~-----------------~~---~~~~~~Dv~~~~~ 65 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHG-----------------DN---VLGIVGDVRSLED 65 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----------------GG---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-----------------CC---eeEEecccccHHH
Confidence 45555 5 5899999999999999999999999988777654321 11 2222333445556
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
+++.++.+.....+=+++|+...
T Consensus 66 ~~~~~~~~~~~~g~idilvnnAG 88 (276)
T d1bdba_ 66 QKQAASRCVARFGKIDTLIPNAG 88 (276)
T ss_dssp HHHHHHHHHHHHSCCCEEECCCC
T ss_pred HHHHHHHHHHHhCCccccccccc
Confidence 77777777766656678887654
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.0044 Score=54.17 Aligned_cols=35 Identities=17% Similarity=0.464 Sum_probs=32.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
.+||+|||.|..|..-|..|+++||+|++|++++.
T Consensus 43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence 46899999999999999999999999999999864
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.63 E-value=0.0052 Score=49.29 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=32.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK 41 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 41 (503)
.||||||.|..|+.||....+.|++|.++|.+++.
T Consensus 12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~ 46 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA 46 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 58999999999999999999999999999988763
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=95.61 E-value=0.022 Score=51.82 Aligned_cols=80 Identities=15% Similarity=0.178 Sum_probs=55.7
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+.+| | .+-+|..+|+.|++.|++|.+.+|++++++++.+.. + +..+..=+.+...
T Consensus 6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~------~----------------~~~~~~Dv~~~~~ 63 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV------G----------------AHPVVMDVADPAS 63 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT------T----------------CEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc------C----------------CeEEEEecCCHHH
Confidence 55555 5 578999999999999999999999998887766532 1 1122222345556
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++++++++.....+=+++|++...
T Consensus 64 v~~~~~~~~~~~g~iDilVnnAG~ 87 (242)
T d1ulsa_ 64 VERGFAEALAHLGRLDGVVHYAGI 87 (242)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHhcCCceEEEECCcc
Confidence 777777776655555778876543
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=95.60 E-value=0.015 Score=53.35 Aligned_cols=81 Identities=11% Similarity=0.202 Sum_probs=57.1
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCC
Q 010702 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (503)
Q Consensus 7 ~~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~ 82 (503)
-|+.|| | .+-+|.++|+.|++.|++|.+.+|++++++++.++.. .+.+++. +.+
T Consensus 6 gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~Dv~~ 63 (253)
T d1hxha_ 6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG----------------------ERSMFVRHDVSS 63 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC----------------------TTEEEECCCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC----------------------CCeEEEEeecCC
Confidence 367777 5 6789999999999999999999999988877665421 1122221 234
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
...++++++.+.....+=+++|+....
T Consensus 64 ~~~~~~~~~~~~~~~g~iDilVnnAG~ 90 (253)
T d1hxha_ 64 EADWTLVMAAVQRRLGTLNVLVNNAGI 90 (253)
T ss_dssp HHHHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCCeEEecccc
Confidence 456777777777666566788877554
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=95.59 E-value=0.026 Score=52.70 Aligned_cols=84 Identities=13% Similarity=0.182 Sum_probs=56.1
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCC
Q 010702 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAG 83 (503)
Q Consensus 8 ~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~ 83 (503)
|++|| |.|-+|.++|+.|++.|++|.+.+|+.++.++..++... ... .++..+ =+.+.
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~--------------~~g----~~~~~~~~D~~~~ 87 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISS--------------QTG----NKVHAIQCDVRDP 87 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------------HHS----SCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH--------------hcC----CceEEEEecccCh
Confidence 67777 689999999999999999999999999887766543210 001 122222 23444
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++..++.+......=+++|++...
T Consensus 88 ~~v~~~~~~~~~~~g~iDilvnnAg~ 113 (294)
T d1w6ua_ 88 DMVQNTVSELIKVAGHPNIVINNAAG 113 (294)
T ss_dssp HHHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred HHHHHHhhhhhhhccccchhhhhhhh
Confidence 45666666666655555777776544
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.59 E-value=0.024 Score=53.33 Aligned_cols=88 Identities=11% Similarity=0.276 Sum_probs=59.1
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec--CCC
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KAG 83 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v--p~~ 83 (503)
|++|| | .+-+|.++|+.|++.|++|.+.+|+.++.++..++-... . ......+++.+.+ .+.
T Consensus 13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~----------~----~~~~~~~~~~~~~Dvs~~ 78 (297)
T d1yxma1 13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQAN----------L----PPTKQARVIPIQCNIRNE 78 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------S----CTTCCCCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh----------h----ccccCceEEEEeccCCCH
Confidence 56666 4 688999999999999999999999998877665432110 0 0000134544443 455
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++++++.+.....+=+++|+....
T Consensus 79 ~~v~~~~~~~~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 79 EEVNNLVKSTLDTFGKINFLVNNGGG 104 (297)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCeEEEEeeccc
Confidence 66777887777666666888876543
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.57 E-value=0.004 Score=57.88 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=33.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|+.+|.|||.|..|..+|..|+++|++|.+++++++
T Consensus 1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (292)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 345899999999999999999999999999999875
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.56 E-value=0.066 Score=41.48 Aligned_cols=86 Identities=13% Similarity=0.036 Sum_probs=59.4
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhh
Q 010702 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDK 262 (503)
Q Consensus 183 ~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~ 262 (503)
.+.++|++.|.+.+..+..++|.+.++++.| ++..++.+.+. ......++ .+.....|++. -+-||
T Consensus 3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g-~d~~~v~~~~~--~d~~~~~~-------~~~pg~g~GG~----ClpKD 68 (98)
T d1dlja1 3 EAEAVKLFANTYLALRVAYFNELDTYAESRK-LNSHMIIQGIS--YDDRIGMH-------YNNPSFGYGGY----SLPKD 68 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH--TSTTTCSS-------SCCCCSSCCSS----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHH--hccccCCc-------cccCCCCcccc----cCccc
Confidence 4789999999999999999999999999998 99998887763 11111111 12221234443 33445
Q ss_pred cCCcchHHHHHHHHHHcCCCcchHHHHH
Q 010702 263 TGMKGTGKWTVQQAAELSVAAPTIAASL 290 (503)
Q Consensus 263 ~~~kgtG~~~~~~A~~~gvp~p~~~~Av 290 (503)
. +++ .+.+.|++.+++.++.
T Consensus 69 ~-------~al-~~~~~~~~~~ll~~~~ 88 (98)
T d1dlja1 69 T-------KQL-LANYNNIPQTLIEAIV 88 (98)
T ss_dssp H-------HHH-HHHHTTSSCSHHHHHH
T ss_pred H-------HHH-HHHhcCCCcHHHHHHH
Confidence 4 344 4677899999988764
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.54 E-value=0.0056 Score=53.18 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=31.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTS 40 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~ 40 (503)
.+||.|||.|..|...|..|+++|+ +|+++++++.
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 3689999999999999999999999 5999998864
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.51 E-value=0.009 Score=51.58 Aligned_cols=73 Identities=12% Similarity=0.062 Sum_probs=48.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHhhcccCCCCeeee--CCHHHHHhccC--CCcEEEEecC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFP-ISVYNRTTSKVDETLDRAHREGQLPLTGH--YTPRDFVLSIQ--RPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~i~~~--~s~~e~~~~l~--~~dvIil~vp 81 (503)
.+|.|+|+|.+|...++.+...|.+ |.+.|+++++.+.+.+.+... +.-. .+..+.+.++. ..|+||.|+.
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~----~i~~~~~~~~~~i~~~t~gg~D~vid~~G 105 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH----VINSKTQDPVAAIKEITDGGVNFALESTG 105 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSE----EEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeE----EEeCCCcCHHHHHHHHcCCCCcEEEEcCC
Confidence 3699999999999999999888876 457799999888777665321 1111 22333333221 2577777776
Q ss_pred CC
Q 010702 82 AG 83 (503)
Q Consensus 82 ~~ 83 (503)
..
T Consensus 106 ~~ 107 (174)
T d1f8fa2 106 SP 107 (174)
T ss_dssp CH
T ss_pred cH
Confidence 54
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=95.49 E-value=0.026 Score=48.58 Aligned_cols=36 Identities=14% Similarity=0.332 Sum_probs=28.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC-CcEE-EEeCChhH
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG-FPIS-VYNRTTSK 41 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G-~~V~-v~dr~~~~ 41 (503)
|.+|||-|.|++|+.+.+.+.+++ .+|. +.|+++..
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~ 38 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDF 38 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSH
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHH
Confidence 458999999999999999988776 4554 55666543
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.016 Score=53.31 Aligned_cols=83 Identities=10% Similarity=0.189 Sum_probs=57.4
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCC
Q 010702 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (503)
Q Consensus 8 ~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~ 83 (503)
|+.|| |.+-+|.++|+.|++.|++|.+.+|++++++++.++-... . .+++.+. +.+.
T Consensus 12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~----------------g---~~~~~~~~Dvs~~ 72 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL----------------G---GQAFACRCDITSE 72 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc----------------C---CcEEEEEccCCCH
Confidence 67777 5688999999999999999999999998887766532110 0 2333332 3344
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++++++.+...+.+=+++|++...
T Consensus 73 ~~~~~~~~~~~~~~g~iDilvnnAG~ 98 (255)
T d1fmca_ 73 QELSALADFAISKLGKVDILVNNAGG 98 (255)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEeeeCCcC
Confidence 56777777776665555777776543
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=95.47 E-value=0.023 Score=51.99 Aligned_cols=82 Identities=10% Similarity=0.184 Sum_probs=58.0
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCC
Q 010702 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (503)
Q Consensus 8 ~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~ 83 (503)
|+.+| |.+-+|..+|+.|++.|++|.+.+|++++.+++.+.... . .++..+. +.+.
T Consensus 7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~~~Dv~~~ 66 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-----------------P---DQIQFFQHDSSDE 66 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-----------------T---TTEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-----------------C---CcEEEEEccCCCH
Confidence 67777 468899999999999999999999999887776653210 0 1222222 4455
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++++++.+...+.+=|++|++...
T Consensus 67 ~~v~~~~~~~~~~~G~iDiLVnnAg~ 92 (251)
T d1zk4a1 67 DGWTKLFDATEKAFGPVSTLVNNAGI 92 (251)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCceEEEecccc
Confidence 67778887777665555788876544
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.0034 Score=46.91 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=31.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|++|||||.|..|+.|+..-.+-|++|.++|.+++
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 35899999999999999999999999999997754
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.46 E-value=0.019 Score=52.81 Aligned_cols=82 Identities=13% Similarity=0.219 Sum_probs=55.8
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+.|| | .+-+|..+|+.|++.|++|.+.+|+.++++++.++... + +..+..=+.+...
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~----~----------------~~~~~~Dvt~~~~ 65 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGP----A----------------ACAIALDVTDQAS 65 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCT----T----------------EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC----c----------------eEEEEeeCCCHHH
Confidence 55555 5 58999999999999999999999999888776654210 0 1111222344456
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
++++++++.....+=|++|+....
T Consensus 66 v~~~~~~~~~~~g~iDilVnnAg~ 89 (256)
T d1k2wa_ 66 IDRCVAELLDRWGSIDILVNNAAL 89 (256)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHhCCccEEEeeccc
Confidence 777777776655555777776543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.013 Score=53.63 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=35.2
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 48 (503)
|+.+| | .+-+|.++|+.|++.|++|.+.+|++++++++.++
T Consensus 8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~ 50 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE 50 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh
Confidence 45555 5 68899999999999999999999999988887765
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.28 E-value=0.38 Score=43.10 Aligned_cols=175 Identities=15% Similarity=0.145 Sum_probs=102.0
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEEEe-C----------ChhHHHHHHHhhcc-cCCCCeeeeCCHHHHHhccCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVA-EKGFPISVYN-R----------TTSKVDETLDRAHR-EGQLPLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~-~~G~~V~v~d-r----------~~~~~~~l~~~~~~-~g~~~i~~~~s~~e~~~~l~~~ 73 (503)
++|.|-|.|.+|..+|+.|. +.|..|...+ . +.+.+....+.... .+....+ .-+.+++... +|
T Consensus 32 ~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~ 108 (234)
T d1b26a1 32 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGE-RITNEELLEL--DV 108 (234)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCE-EECHHHHHTS--CC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccce-eecccccccc--cc
Confidence 57999999999999999997 5698877543 2 33334333332211 0000122 2255666652 49
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc--CCCChhhhhcCCcccCCCC
Q 010702 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG--VSGGEEGARHGPSLMPGGS 151 (503)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p--vsgg~~~a~~G~~i~~gg~ 151 (503)
|+++-|--.+... .+-.+.+. -++|+...|... +.+..+.|.++|+.|+.-- -+||...
T Consensus 109 DI~~PcA~~~~I~----~~~a~~l~-~~~I~e~AN~p~--t~~a~~~L~~rgI~~~PD~~aNaGGVi~------------ 169 (234)
T d1b26a1 109 DILVPAALEGAIH----AGNAERIK-AKAVVEGANGPT--TPEADEILSRRGILVVPDILANAGGVTV------------ 169 (234)
T ss_dssp SEEEECSCTTCBC----HHHHTTCC-CSEEECCSSSCB--CHHHHHHHHHTTCEEECHHHHTTHHHHH------------
T ss_pred ceeecchhccccc----HHHHHHhh-hceEeecCCCCC--CHHHHHHHHHCCeEEechHHhcCCCeee------------
Confidence 9988876554322 33344453 368888888653 3345677899999887532 1222110
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010702 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIF 224 (503)
Q Consensus 152 ~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~ 224 (503)
..+ ++.+... ...+ -..-+.+.++..+...+.+.+..+++.+ +++.+...++
T Consensus 170 -s~~----E~~qn~~-------~~~w--------~~e~V~~~l~~~m~~~~~~v~~~a~~~~-~~~r~aA~~~ 221 (234)
T d1b26a1 170 -SYF----EWVQDLQ-------SFFW--------DLDQVRNALEKMMKGAFNDVMKVKEKYN-VDMRTAAYIL 221 (234)
T ss_dssp -HHH----HHHHHHT-------TCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHHH
T ss_pred -eeh----hcccccc-------hhcc--------cHHHHHHHHHHHHHHHHHHHHHHHHHhC-cCHHHHHHHH
Confidence 111 2223222 1111 1134566666667777788999999998 9988776554
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=95.25 E-value=0.038 Score=50.75 Aligned_cols=84 Identities=15% Similarity=0.244 Sum_probs=57.6
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCC
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~ 83 (503)
|+.|| | .+-+|.++|+.|++.|++|.+.+|+++++++..+.... .... .+++.+. +.+.
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~--------------~~~~---~~~~~~~~Dvt~~ 67 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLE--------------TAPD---AEVLTTVADVSDE 67 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------------HCTT---CCEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--------------hCCC---CeEEEEeccCCCH
Confidence 56666 5 57899999999999999999999999887766543211 0011 3344333 3455
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
..++.+++++...+.+=|++|+...
T Consensus 68 ~~v~~~~~~~~~~~G~iDiLVnnAG 92 (258)
T d1iy8a_ 68 AQVEAYVTATTERFGRIDGFFNNAG 92 (258)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCc
Confidence 6777778777766655678888654
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.25 E-value=0.029 Score=51.31 Aligned_cols=84 Identities=19% Similarity=0.295 Sum_probs=56.3
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCC
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~ 83 (503)
|+.+| | .+-+|.++|+.|++.|++|.+.+|+.++.++..++.. +-. . .+++.+. +.+.
T Consensus 6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~--------------~~~-g---~~~~~~~~Dv~~~ 67 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLT--------------EKY-G---VETMAFRCDVSNY 67 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------HHH-C---CCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--------------HHh-C---CcEEEEEccCCCH
Confidence 56655 5 5789999999999999999999999988766554211 000 1 2333332 3444
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++.+++++...+.+=|++|++...
T Consensus 68 ~~v~~~~~~~~~~~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 68 EEVKKLLEAVKEKFGKLDTVVNAAGI 93 (251)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 66777777777665555788876543
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.052 Score=43.35 Aligned_cols=113 Identities=17% Similarity=0.092 Sum_probs=83.5
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
..||-|-|. |.-|+..+..+.+.|-+|.. ..+|.+- |... .++-.++|.+|+++.. .+|.-++-||+..
T Consensus 6 ~trVlvQGiTG~~G~~ht~~m~~yGT~vVa-GVtPgkg------G~~~--~giPVf~sV~eAv~~~-~~~~SvIfVPp~~ 75 (119)
T d2nu7a1 6 NTKVICQGFTGSQGTFHSEQAIAYGTKMVG-GVTPGKG------GTTH--LGLPVFNTVREAVAAT-GATASVIYVPAPF 75 (119)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEE-EECTTCT------TEEE--TTEEEESSHHHHHHHH-CCCEEEECCCGGG
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCceEE-EEccCCC------Cccc--CCCchhhHHHHHHHHh-CCCeEEEeccHHH
Confidence 358999997 99999999999999987553 2334321 1111 1578899999998863 4899999999987
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+.+.+++.+...++ .+|+-+-...+.+..++.+.+++++..+++
T Consensus 76 a~dA~~EAi~agI~--~iV~ITEgIP~~D~~~i~~~~~~~~~~liG 119 (119)
T d2nu7a1 76 CKDSILEAIDAGIK--LIITITEGIPTLDMLTVKVKLDEAGVRMIG 119 (119)
T ss_dssp HHHHHHHHHHTTCS--EEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHCCCC--EEEEecCCCCHHHHHHHHHHHhhCCCEEeC
Confidence 77777787766553 566666667778888888888888877653
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.23 E-value=0.026 Score=52.00 Aligned_cols=87 Identities=13% Similarity=0.249 Sum_probs=60.0
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCC
Q 010702 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (503)
Q Consensus 7 ~~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~ 82 (503)
-|+++| |.+-+|.++|+.|++.|++|.+.+|+.++++++.++....+ . . ..++..+. +.+
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~------~-------~---~~~~~~~~~Dvt~ 68 (264)
T d1spxa_ 5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAG------V-------S---EQNVNSVVADVTT 68 (264)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------C-------C---GGGEEEEECCTTS
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------C-------C---cCceEEEEccCCC
Confidence 378888 57899999999999999999999999998877765421110 0 0 02233332 445
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
...++++++.+.....+=+++|++...
T Consensus 69 ~~~v~~~~~~~~~~~g~iDilvnnAG~ 95 (264)
T d1spxa_ 69 DAGQDEILSTTLGKFGKLDILVNNAGA 95 (264)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCC-
T ss_pred HHHHHHHHHHHHHHhCCCCEeeccccc
Confidence 567777887777666566888887654
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=95.14 E-value=0.058 Score=43.19 Aligned_cols=113 Identities=19% Similarity=0.150 Sum_probs=83.0
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
..||-|-|. |..|+-.+..+.+.|-+|.. ..+|.+- |... .++-.+++.+|++++. .+|.-++.||+..
T Consensus 7 ~trVivQGiTG~~G~~ht~~m~~yGT~iVa-GVtPgkg------G~~~--~giPVf~tV~eAv~~~-~~d~SvIfVPp~~ 76 (121)
T d1oi7a1 7 ETRVLVQGITGREGQFHTKQMLTYGTKIVA-GVTPGKG------GMEV--LGVPVYDTVKEAVAHH-EVDASIIFVPAPA 76 (121)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEE-EECTTCT------TCEE--TTEEEESSHHHHHHHS-CCSEEEECCCHHH
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCceEe-eeecCCC------CcEE--ECCchHhhHHHHHHhc-CCeEEEEeeCHHH
Confidence 358999996 99999999999999987543 2334321 1110 1578899999999874 6999999999987
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+.+.+++.+...++ .+|+-+-.....+..++.+.++.++.++++
T Consensus 77 a~dAi~EAi~agI~--liv~ITEgVPv~Dm~~i~~~~~~~~~~liG 120 (121)
T d1oi7a1 77 AADAALEAAHAGIP--LIVLITEGIPTLDMVRAVEEIKALGSRLIG 120 (121)
T ss_dssp HHHHHHHHHHTTCS--EEEECCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhCCCc--EEEEecCCCCHHHHHHHHHHHHhCCCEEeC
Confidence 77777777766542 456656666777888888888888877664
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=95.10 E-value=0.0086 Score=54.95 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=30.3
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
+|.|||.|.+|.+.|..|+++|++|+++|++.
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 49999999999999999999999999999874
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.045 Score=50.12 Aligned_cols=85 Identities=15% Similarity=0.219 Sum_probs=58.3
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCC
Q 010702 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (503)
Q Consensus 8 ~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~ 83 (503)
|+.+| |.+-+|.++|+.|++.|++|.+.+|++++++++.++....+ . ..+++.+. +.+.
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~--------------~---~~~~~~~~~Dls~~ 73 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG--------------Y---PGTLIPYRCDLSNE 73 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------C---SSEEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------C---CceEEEEEccCCCH
Confidence 56666 56899999999999999999999999998888765422110 0 02333332 3455
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+.++.+++.+.....+=+++|++...
T Consensus 74 ~~v~~~v~~~~~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 74 EDILSMFSAIRSQHSGVDICINNAGL 99 (257)
T ss_dssp HHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEecccc
Confidence 67777887777655555777776543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=95.09 E-value=0.027 Score=52.04 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=32.1
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 5 ALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 5 ~~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
+++||.|+| .|.+|+.++..|+++||+|++.+|++.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~ 38 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV 38 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 356899998 599999999999999999999998753
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.06 E-value=0.003 Score=51.90 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=50.5
Q ss_pred CcEEEEcccHHHHHHHHHHH-hCCCcEEE-EeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVA-EKGFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~-~~G~~V~v-~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
-+|.|+|+|.+|..++..+. +.||++.+ +|-++++...... | .++...+.++++... ..+++++++|. .
T Consensus 4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~-G-----i~V~~~~~l~~~~~~--~i~iai~~i~~-~ 74 (126)
T d2dt5a2 4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVR-G-----GVIEHVDLLPQRVPG--RIEIALLTVPR-E 74 (126)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEET-T-----EEEEEGGGHHHHSTT--TCCEEEECSCH-H
T ss_pred ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEEC-C-----EEEecHHHHHHHHhh--cccEEEEeCCH-H
Confidence 37999999999999998664 45788665 5888765322111 0 123333444454442 36777888876 4
Q ss_pred hHHHHHHHHHh
Q 010702 85 PVDQTIAALSE 95 (503)
Q Consensus 85 ~v~~vl~~l~~ 95 (503)
..+++++.+.+
T Consensus 75 ~~~~I~d~l~~ 85 (126)
T d2dt5a2 75 AAQKAADLLVA 85 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56667766654
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.04 E-value=0.015 Score=51.36 Aligned_cols=70 Identities=14% Similarity=0.087 Sum_probs=47.4
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEE--EeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEEEec
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISV--YNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v--~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIil~v 80 (503)
|++|-|.| .|.+|+.++..|+++|++|.+ ..|++++...+.... .+.. ..+.+.+.+.++.+|.|+.+.
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~~~d~vi~~a 76 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEA------DVFIGDITDADSINPAFQGIDALVILT 76 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCT------TEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCc------EEEEeeeccccccccccccceeeEEEE
Confidence 57899998 699999999999999987554 568887765443211 1111 234444444455588888775
Q ss_pred C
Q 010702 81 K 81 (503)
Q Consensus 81 p 81 (503)
.
T Consensus 77 ~ 77 (252)
T d2q46a1 77 S 77 (252)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.03 E-value=0.0094 Score=52.91 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=30.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 39 (503)
+||.|||.|.-|.+.|..|+++|+ +|+++++++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 489999999999999999999996 799999875
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=95.02 E-value=0.039 Score=50.86 Aligned_cols=84 Identities=10% Similarity=0.066 Sum_probs=56.4
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
-|+.+| |.+-+|..+|+.|++.|++|.+.+|++++.+++.++....+ . ..++..=+.+..
T Consensus 6 gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~--~----------------~~~~~~Dv~~~~ 67 (268)
T d2bgka1 6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPD--V----------------ISFVHCDVTKDE 67 (268)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTT--T----------------EEEEECCTTCHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCC--c----------------eEEEEccCCCHH
Confidence 366777 46889999999999999999999999998887765421110 0 111111234445
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st 108 (503)
.++.+++.+.....+=+++|++..
T Consensus 68 ~v~~~~~~~~~~~g~iD~lVnnAG 91 (268)
T d2bgka1 68 DVRNLVDTTIAKHGKLDIMFGNVG 91 (268)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCcceeccccc
Confidence 677777777665555577776554
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=95.02 E-value=0.027 Score=51.18 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=53.7
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCC
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAG 83 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~ 83 (503)
|+.+| | .+-+|..+|+.|+++|++|.+.+|+.+++++..++.. .+++.+ =+.+.
T Consensus 6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dls~~ 63 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE----------------------AEAIAVVADVSDP 63 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC----------------------SSEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC----------------------CceEEEEecCCCH
Confidence 45555 5 5779999999999999999999999988776655321 122222 13444
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGG 107 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~s 107 (503)
..+++.++.+.....+=+++|+..
T Consensus 64 ~~i~~~~~~i~~~~g~iDiLinnA 87 (241)
T d2a4ka1 64 KAVEAVFAEALEEFGRLHGVAHFA 87 (241)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEGG
T ss_pred HHHHHHHHHHHHHhCCccEecccc
Confidence 567777777776655667777754
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.00 E-value=0.038 Score=51.11 Aligned_cols=86 Identities=15% Similarity=0.258 Sum_probs=58.0
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCC
Q 010702 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (503)
Q Consensus 8 ~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~ 83 (503)
|+.|| |.+-+|.++|+.|++.|++|.+.+|++++++++.++-...+ . .. .++..+. +.+.
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~------~-------~~---~~~~~~~~Dvs~~ 69 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSG------V-------SE---KQVNSVVADVTTE 69 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------C-------CG---GGEEEEECCTTSH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------C-------CC---CceEEEEccCCCH
Confidence 56666 46889999999999999999999999998887765422110 0 00 2233333 3455
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++.+++.+.....+=+++|+....
T Consensus 70 ~~v~~~~~~~~~~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 70 DGQDQIINSTLKQFGKIDVLVNNAGA 95 (272)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCceEEEeCCcc
Confidence 56777777777665555788876443
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.97 E-value=0.0089 Score=56.82 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=32.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
++||.|||+|.-|...|..|+++|++|.+++++..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 46899999999999999999999999999998754
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.94 E-value=0.0084 Score=54.71 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=31.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
+||.|||.|.-|..-|..|+++|++|+++++++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 589999999999999999999999999999864
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.90 E-value=0.009 Score=50.71 Aligned_cols=91 Identities=11% Similarity=0.134 Sum_probs=52.6
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCc---EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 8 RIGLAGL-AVMGQNLALNVAEKGFP---ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 8 ~IgIIGl-G~mG~~lA~~L~~~G~~---V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
||||||+ |..|.-|.+.|.++.|. +.....+...-..+..... ........++... +.|++++++|.+
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~-----~~~~~~~~~~~~~---~~d~~f~~~~~~ 74 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQ-----DITIEETTETAFE---GVDIALFSAGSS 74 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTE-----EEEEEECCTTTTT---TCSEEEECSCHH
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCC-----cccccccchhhhh---hhhhhhhccCcc
Confidence 7999996 99999999999988753 3333322111000000000 1122222222223 389999999875
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
. ..+....+ ..+|..|||.|+..
T Consensus 75 ~-s~~~~~~~---~~~~~~VIDlSsdf 97 (154)
T d2gz1a1 75 T-SAKYAPYA---VKAGVVVVDNTSYF 97 (154)
T ss_dssp H-HHHHHHHH---HHTTCEEEECSSTT
T ss_pred c-hhhHHhhh---ccccceehhcChhh
Confidence 3 33333333 34789999999865
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=94.88 E-value=0.0096 Score=55.43 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=31.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
+||.|||.|..|.+.|..|+++|++|+++++++.
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~ 64 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER 64 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4799999999999999999999999999998753
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.86 E-value=0.14 Score=42.06 Aligned_cols=97 Identities=14% Similarity=0.100 Sum_probs=58.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHh-CCCcEE-EEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAE-KGFPIS-VYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~-~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
||+|+| .|.||+.++..+.+ .++++. .+|+.. ++..... ..+|+||=...+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~----------------------~~~~~~~--~~~DvvIDFS~p~- 55 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD----------------------PLSLLTD--GNTEVVIDFTHPD- 55 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC----------------------CTHHHHT--TTCSEEEECCCTT-
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC----------------------chhhhcc--ccCCEEEEcccHH-
Confidence 699999 59999999888765 456654 455431 1122221 1389988876553
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHH-HHHHH-HhcCccEeccc
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTER-RIHEA-SQKGLLYLGMG 132 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~-~~~~l-~~~gi~~i~~p 132 (503)
.+.+.++.... .|.-+|-+||+......+ +.+.+ +.+.+-.+-+|
T Consensus 56 ~~~~~~~~~~~---~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~ap 102 (135)
T d1yl7a1 56 VVMGNLEFLID---NGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAP 102 (135)
T ss_dssp THHHHHHHHHH---TTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECS
T ss_pred HHHHHHHHHHh---cCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcC
Confidence 56666655543 566777788887654433 33322 34444433333
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=94.83 E-value=0.044 Score=49.66 Aligned_cols=83 Identities=18% Similarity=0.241 Sum_probs=58.1
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCc-------EEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFP-------ISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~-------V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil 78 (503)
+|.+| | .+-+|.++|+.|+++|++ |.+++|++++++++.++-... . .++..+
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~----------------g---~~~~~~ 62 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE----------------G---ALTDTI 62 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT----------------T---CEEEEE
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEE
Confidence 56666 5 477999999999999997 899999999887776532111 0 222222
Q ss_pred --ecCCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 79 --LVKAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 79 --~vp~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
=+.+..+++++++.+.....+=|++|+....
T Consensus 63 ~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAg~ 95 (240)
T d2bd0a1 63 TADISDMADVRRLTTHIVERYGHIDCLVNNAGV 95 (240)
T ss_dssp ECCTTSHHHHHHHHHHHHHHTSCCSEEEECCCC
T ss_pred EecCCCHHHHHHHHHHHHHHcCCcceeeccccc
Confidence 2455567788888887766666788876554
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.75 E-value=0.038 Score=50.72 Aligned_cols=84 Identities=14% Similarity=0.176 Sum_probs=55.7
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCC
Q 010702 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (503)
Q Consensus 7 ~~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~ 82 (503)
-|+.+| |.+-+|..+|+.|++.|++|.+.+|+++++++..++.... . .++..+. +.+
T Consensus 8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~----------------~---~~~~~~~~Dv~~ 68 (259)
T d1xq1a_ 8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK----------------G---FQVTGSVCDASL 68 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CceEEEeccCCC
Confidence 356666 4688999999999999999999999999887766542111 0 2222222 344
Q ss_pred ChhHHHHHHHHHhcC-CCCCEEEecCCC
Q 010702 83 GSPVDQTIAALSEHM-SPGDCIIDGGNE 109 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l-~~g~iIId~st~ 109 (503)
...++.+++.+...+ .+=+++|+....
T Consensus 69 ~~~v~~~~~~~~~~~~g~idilvnnAG~ 96 (259)
T d1xq1a_ 69 RPEREKLMQTVSSMFGGKLDILINNLGA 96 (259)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCcccccccccc
Confidence 456677777666544 234677776544
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.71 E-value=0.047 Score=50.47 Aligned_cols=85 Identities=15% Similarity=0.251 Sum_probs=55.9
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEE--ecCCC
Q 010702 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVII--LVKAG 83 (503)
Q Consensus 8 ~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil--~vp~~ 83 (503)
|+.|| |.+-+|.++|+.|++.|++|.+.+|++++++++.++-...+ . .. .++..+ =+.+.
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~---~----------~~---~~~~~~~~Dv~~~ 68 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAG---V----------PA---EKINAVVADVTEA 68 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---C----------CG---GGEEEEECCTTSH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC---C----------CC---cceEEEEeeCCCH
Confidence 55666 46789999999999999999999999998877665421110 0 00 122222 23444
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
..++++++.+.....+=|++|+...
T Consensus 69 ~~v~~~~~~~~~~~G~iDilVnnAG 93 (274)
T d1xhla_ 69 SGQDDIINTTLAKFGKIDILVNNAG 93 (274)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHcCCceEEEeecc
Confidence 5677777777765555577777643
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.029 Score=51.93 Aligned_cols=86 Identities=13% Similarity=0.193 Sum_probs=59.9
Q ss_pred CcEEEE--cccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 7 SRIGLA--GLAVMGQNLALNVAEK-GFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 7 ~~IgII--GlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
++|+|| |.+-+|..+|+.|++. |.+|.+++|++++.++..++....+ . .+.++.+=+.+.
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--------------~---~~~~~~~Dvs~~ 65 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--------------L---SPRFHQLDIDDL 65 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--------------C---CCEEEECCTTCH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--------------C---cEEEEEEecCCH
Confidence 589999 6789999999999975 8999999999998877765421110 0 133444445555
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++++++.+.....+=|++|+....
T Consensus 66 ~sv~~~~~~~~~~~g~iDiLVnNAGi 91 (275)
T d1wmaa1 66 QSIRALRDFLRKEYGGLDVLVNNAGI 91 (275)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCc
Confidence 67777777776654444777776544
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=94.63 E-value=0.036 Score=48.16 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=51.5
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCC-CcEEEE-eCCh-hH-HHHHHHhhcccCCCCee-eeCCHHHHHhccCCCcEEEEe
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKG-FPISVY-NRTT-SK-VDETLDRAHREGQLPLT-GHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G-~~V~v~-dr~~-~~-~~~l~~~~~~~g~~~i~-~~~s~~e~~~~l~~~dvIil~ 79 (503)
+.||||||+ |..|.-|.+.|.++- +++... .++. .+ ..+........ ... .....++.... +|+++++
T Consensus 5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~Dvvf~a 78 (183)
T d2cvoa1 5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQ---DLPNLVAVKDADFSN---VDAVFCC 78 (183)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTS---CCCCCBCGGGCCGGG---CSEEEEC
T ss_pred ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCcccccccccccc---ccccchhhhhhhhcc---cceeeec
Confidence 458999995 999999999999874 355544 3222 11 22221111000 111 11122233344 9999999
Q ss_pred cCCChhHHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 80 VKAGSPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
+|.+. ..+. .+.+.+...+||.+....
T Consensus 79 lp~~~-s~~~----~~~l~~~~~~v~~~~~~~ 105 (183)
T d2cvoa1 79 LPHGT-TQEI----IKGLPQELKIVDLSADFR 105 (183)
T ss_dssp CSSSH-HHHH----HHTSCSSCEEEECSSTTT
T ss_pred cccch-HHHH----HHHHHhcCcccccchhhh
Confidence 99974 3333 333444455556555543
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.62 E-value=0.0022 Score=57.66 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=24.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEE
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPIS 33 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~ 33 (503)
|||.|||+|.+|.+.|..|+++|++|+
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~ 27 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVL 27 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTS
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCce
Confidence 689999999999999999999998643
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=94.62 E-value=0.029 Score=51.18 Aligned_cols=112 Identities=8% Similarity=0.062 Sum_probs=68.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEe-CC----------hhHHHHHHHh--------h-cccCCCCeeeeCCHHHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYN-RT----------TSKVDETLDR--------A-HREGQLPLTGHYTPRDF 66 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~d-r~----------~~~~~~l~~~--------~-~~~g~~~i~~~~s~~e~ 66 (503)
++|.|-|.|.+|..+|+.|.+.|.+|...+ .+ .+.+.+..+. . ... +.....+++++
T Consensus 32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i 108 (242)
T d1v9la1 32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKD---NAEFVKNPDAI 108 (242)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTS---CCCCCSSTTGG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhcc---CceEeeCcchh
Confidence 589999999999999999999999987553 32 1222111100 0 000 12233345555
Q ss_pred HhccCCCcEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 67 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
... +||+++-|-..+.-.. +-.+.+ +-++|+...|... +.+..+.|.++|+.|+.
T Consensus 109 ~~~--~~DIliPcA~~~~I~~----~~a~~i-~ak~IvegAN~p~--t~~a~~~L~~rgI~~~P 163 (242)
T d1v9la1 109 FKL--DVDIFVPAAIENVIRG----DNAGLV-KARLVVEGANGPT--TPEAERILYERGVVVVP 163 (242)
T ss_dssp GGC--CCSEEEECSCSSCBCT----TTTTTC-CCSEEECCSSSCB--CHHHHHHHHTTTCEEEC
T ss_pred ccc--cccEEeecchhccccH----HHHHhc-ccCEEEecCCCCC--ChhHHHHHHhCCeEEeC
Confidence 542 4999998876542222 222334 3478888888753 44456788999998774
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.60 E-value=0.039 Score=47.18 Aligned_cols=91 Identities=10% Similarity=0.040 Sum_probs=59.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.+|.|.|. |.+|....+.+...|.+|.+.++++++.+.+.+.|... +.-..+..+.......+|+||-++.+ .
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~----~i~~~~~~~~~~~~~g~D~v~d~~G~--~ 102 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEE----AATYAEVPERAKAWGGLDLVLEVRGK--E 102 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSE----EEEGGGHHHHHHHTTSEEEEEECSCT--T
T ss_pred CEEEEEeccccchhhhhhhhcccccccccccccccccccccccccce----eeehhhhhhhhhccccccccccccch--h
Confidence 36889895 99999999888899999999999999888777765432 22222323333334457888877642 2
Q ss_pred HHHHHHHHHhcCCCCCEEEecC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGG 107 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~s 107 (503)
+ +.....+.++-.++..+
T Consensus 103 ~----~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 103 V----EESLGLLAHGGRLVYIG 120 (171)
T ss_dssp H----HHHHTTEEEEEEEEEC-
T ss_pred H----HHHHHHHhcCCcEEEEe
Confidence 3 33344555555555554
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=94.59 E-value=0.028 Score=51.68 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=56.4
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCC
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~ 83 (503)
|+.+| | .+-+|..+|+.|++.|++|.+.+|+.++.++..++... + .. .+++.+. +.+.
T Consensus 10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~-------------~-~g----~~~~~~~~Dv~~~ 71 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGK-------------E-FG----VKTKAYQCDVSNT 71 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHH-------------H-HT----CCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-------------H-hC----CceEEEEccCCCH
Confidence 56666 5 57799999999999999999999998877665543110 0 01 2333332 3455
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..++.+++++.....+=+++|++...
T Consensus 72 ~~v~~~~~~~~~~~g~iDilVnnAg~ 97 (260)
T d1h5qa_ 72 DIVTKTIQQIDADLGPISGLIANAGV 97 (260)
T ss_dssp HHHHHHHHHHHHHSCSEEEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCcEecccccc
Confidence 56777777777766555777776543
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=94.57 E-value=0.062 Score=48.90 Aligned_cols=78 Identities=9% Similarity=0.085 Sum_probs=51.8
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
|+.+| | .+-+|..+|+.|++.|++|.+.+|+++..+. .+.. . ...+-.=+.+...
T Consensus 6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~-~~~~------------------~----~~~~~~Dv~~~~~ 62 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEV-AEAI------------------G----GAFFQVDLEDERE 62 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHH-HHHH------------------T----CEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHc------------------C----CeEEEEeCCCHHH
Confidence 55555 4 7899999999999999999999999875432 2211 0 1222222345556
Q ss_pred HHHHHHHHHhcCCCCCEEEecCC
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st 108 (503)
++++++++.....+=|++|+...
T Consensus 63 v~~~~~~~~~~~G~iDiLVnnAG 85 (248)
T d2d1ya1 63 RVRFVEEAAYALGRVDVLVNNAA 85 (248)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHhcCCCCeEEEeCc
Confidence 77777777666555577777644
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.54 E-value=0.044 Score=50.04 Aligned_cols=87 Identities=14% Similarity=0.239 Sum_probs=59.1
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCCC
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKAG 83 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~~ 83 (503)
|+.+| | .+-+|.++|+.|++.|++|.+.+|++++.++..+..... ....++..+. +.+.
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~-----------------~~~~~~~~~~~Dv~~~ 66 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ-----------------FEPQKTLFIQCDVADQ 66 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT-----------------SCGGGEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh-----------------cCCCcEEEEEeecCCH
Confidence 56666 5 588999999999999999999999999887766542110 0002233322 4455
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCCh
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEWY 111 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~~ 111 (503)
..++++++.+...+.+=+++|+......
T Consensus 67 ~~v~~~~~~~~~~~G~iDilVnnAg~~~ 94 (254)
T d2gdza1 67 QQLRDTFRKVVDHFGRLDILVNNAGVNN 94 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHHHcCCcCeecccccccc
Confidence 6677888777766555578888765543
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.45 E-value=0.018 Score=46.14 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=31.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
.+|.|||.|.+|.-+|..|++.|.+|+++.|.+.
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence 5799999999999999999999999999988764
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.44 E-value=0.15 Score=43.66 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=37.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH 50 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~ 50 (503)
.+|.|+|+|.+|...++.+...|. .|++.|+++++.+...+.|.
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga 74 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA 74 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC
Confidence 369999999999999999999997 57888999998876666553
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.42 E-value=0.056 Score=48.99 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=34.8
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA 49 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~ 49 (503)
++-|.| .+-+|.++|+.|++.|++|.+.+|++++++++.++.
T Consensus 7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~ 49 (242)
T d1cyda_ 7 RALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC 49 (242)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc
Confidence 344446 478999999999999999999999999888777653
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.42 E-value=0.052 Score=49.09 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=35.6
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh
Q 010702 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (503)
Q Consensus 7 ~~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 48 (503)
-|++|| |.+-+|.++|+.|+++|++|.+.+|+.++.++..++
T Consensus 5 GKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~ 48 (248)
T d2o23a1 5 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK 48 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH
Confidence 367777 568899999999999999999999999887766543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.36 E-value=0.098 Score=44.84 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=38.7
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH 50 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~ 50 (503)
.|.|+|+|-+|...++.+...|. +|.+.|+++++.+...+.|+
T Consensus 32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA 75 (176)
T d1d1ta2 32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA 75 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred EEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence 59999999999999999999995 79999999999988777665
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.1 Score=47.21 Aligned_cols=123 Identities=16% Similarity=0.164 Sum_probs=69.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|.|||+|.+|+.+|.+|++.|. +++++|.+.=....+..+.. ....++-.-+....+.+..+ .+++-+..++...
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~-np~~~i~~~~~~~ 109 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRI-NPHIAITPVNALL 109 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEECSCC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHh-hcccchhhhhhhh
Confidence 589999999999999999999998 68899876533333322110 00000000111122222211 2677777776542
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
.-. ....+ +...++++|++.. +.....+.+.+.+.++-|+.+.+.+
T Consensus 110 ~~~-~~~~~---~~~~divid~~d~-~~~~~~in~~~~~~~ip~i~g~~~~ 155 (247)
T d1jw9b_ 110 DDA-ELAAL---IAEHDLVLDCTDN-VAVRNQLNAGCFAAKVPLVSGAAIR 155 (247)
T ss_dssp CHH-HHHHH---HHTSSEEEECCSS-HHHHHHHHHHHHHHTCCEEEEEEEB
T ss_pred hhc-ccccc---ccccceeeeccch-hhhhhhHHHHHHHhCCCcccccccc
Confidence 222 22222 3356899998754 3333345555666788788765544
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.28 E-value=0.051 Score=46.61 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=38.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH 50 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~ 50 (503)
.+|.|+|+|.+|...++.+...|. +|.+.|+++++.+...+.|.
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa 73 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA 73 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCC
Confidence 369999999999999999999986 68899999999888777664
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.27 E-value=0.028 Score=47.62 Aligned_cols=44 Identities=9% Similarity=0.179 Sum_probs=38.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH 50 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~ 50 (503)
.+|.|+|+|.+|...++.+...|.+|.+.++++++.+.+.+.|.
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga 72 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA 72 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCc
Confidence 47999999999999999899999999999999999887766543
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.26 E-value=0.023 Score=45.99 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=31.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
.++.|||.|.+|.-+|..|++.|.+|+++++++
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence 579999999999999999999999999998876
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=94.24 E-value=0.073 Score=48.33 Aligned_cols=81 Identities=12% Similarity=0.196 Sum_probs=53.4
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHH-HHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cC
Q 010702 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKV-DETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VK 81 (503)
Q Consensus 7 ~~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp 81 (503)
-|+++| | .+-+|.++|+.|++.|++|.+.+|+++.. +...+.. . .+++.+. +.
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~------------------g----~~~~~~~~Dvs 62 (247)
T d2ew8a1 5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNL------------------G----RRVLTVKCDVS 62 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHT------------------T----CCEEEEECCTT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHc------------------C----CcEEEEEeeCC
Confidence 367777 5 57899999999999999999999987532 2211110 0 2233222 34
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+...++.+++++.....+=|++|+....
T Consensus 63 ~~~~v~~~~~~~~~~~G~iDilVnnAG~ 90 (247)
T d2ew8a1 63 QPGDVEAFGKQVISTFGRCDILVNNAGI 90 (247)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5567777887777665556788877554
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=94.21 E-value=0.097 Score=47.82 Aligned_cols=118 Identities=12% Similarity=-0.014 Sum_probs=77.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
++|-=+|+|. | .++..+++.|.+|+++|.++..++...+.....+ .+. ....+..+.... ...|+|+..+.. ..
T Consensus 122 ~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~-~~~~~~~~d~~~~~~~-~~fD~V~ani~~-~~ 196 (254)
T d2nxca1 122 DKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNG-VRPRFLEGSLEAALPF-GPFDLLVANLYA-EL 196 (254)
T ss_dssp CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTT-CCCEEEESCHHHHGGG-CCEEEEEEECCH-HH
T ss_pred CEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcC-CceeEEeccccccccc-cccchhhhcccc-cc
Confidence 4688899986 4 3566778889999999999998877665332221 122 234455555432 347888876554 35
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
..+++..+...|+||-.++- |.........+.+.+++.|...+.
T Consensus 197 l~~l~~~~~~~LkpGG~lil-Sgil~~~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 197 HAALAPRYREALVPGGRALL-TGILKDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp HHHHHHHHHHHEEEEEEEEE-EEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEE-EecchhhHHHHHHHHHHCCCEEEE
Confidence 67777888888888766553 223334556667777777876554
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=94.19 E-value=0.021 Score=45.77 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=31.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
.+|.|||.|..|.-+|..|++.|.+|++++|.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence 579999999999999999999999999999876
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.17 E-value=0.017 Score=52.47 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=31.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~ 40 (503)
++|.|||.|.-|..+|..|+++|. +|.+++++++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 589999999999999999999995 8999999864
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.16 E-value=0.037 Score=47.08 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=57.1
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeC---CHH-HHHhcc--CCCcEEEE
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHY---TPR-DFVLSI--QRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~---s~~-e~~~~l--~~~dvIil 78 (503)
.+|.|+|+ |.+|...++.+...|. .|++.++++++.+.+.+.|... .... ++. +..+.. ...|+|+.
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~-----~i~~~~~~~~~~~~~~~~~~~~d~vid 103 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADY-----VINASMQDPLAEIRRITESKGVDAVID 103 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSE-----EEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCce-----eeccCCcCHHHHHHHHhhcccchhhhc
Confidence 36999995 9999999988888885 8999999999988777665321 1111 222 222211 23677777
Q ss_pred ecCCChhHHHHHHHHHhcCCCCCEEEecC
Q 010702 79 LVKAGSPVDQTIAALSEHMSPGDCIIDGG 107 (503)
Q Consensus 79 ~vp~~~~v~~vl~~l~~~l~~g~iIId~s 107 (503)
|+.... .++.....+.++-.++..+
T Consensus 104 ~~g~~~----~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 104 LNNSEK----TLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp SCCCHH----HHTTGGGGEEEEEEEEECC
T ss_pred ccccch----HHHhhhhhcccCCEEEEec
Confidence 775532 2333344555555555443
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.02 E-value=0.027 Score=45.49 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=30.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
.++.|||.|.+|.-+|..|.+.|.+|+++.|++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~ 53 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI 53 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEech
Confidence 479999999999999999999999999998763
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=94.02 E-value=0.02 Score=53.24 Aligned_cols=33 Identities=30% Similarity=0.581 Sum_probs=30.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 39 (503)
++|.|||.|.+|.+.|..|++.|. +|+++|+++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 479999999999999999999996 699999874
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.01 E-value=0.04 Score=47.15 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=37.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH 50 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~ 50 (503)
.+|.|+|. |.+|....+.+...|.+|++.++++++.+.+.+.|.
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga 74 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA 74 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CEEEEEeccccccccccccccccCcccccccccccccccccccCc
Confidence 36999995 999999998888999999999999988877776554
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=94.00 E-value=0.025 Score=45.67 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=31.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
++|.|||.|.+|.-+|..|++.|.+|+++++++.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence 5899999999999999999999999999998864
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.99 E-value=0.019 Score=55.02 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=31.6
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 5 ALSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 5 ~~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
+.|||-|.| .|.+|+.|+..|.++||+|+++|+...
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~ 50 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN 50 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCc
Confidence 357999997 799999999999999999999987543
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=93.98 E-value=0.097 Score=47.38 Aligned_cols=83 Identities=12% Similarity=0.244 Sum_probs=55.3
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEE-eCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCC
Q 010702 8 RIGLA--GLAVMGQNLALNVAEKGFPISVY-NRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (503)
Q Consensus 8 ~IgII--GlG~mG~~lA~~L~~~G~~V~v~-dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~ 82 (503)
+|.+| |.+-+|..+|+.|++.|++|.+. .|+++..+++.++... . . .+++.+. +.+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~--------------~--g---~~~~~~~~Dv~~ 62 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEA--------------Y--G---GQAITFGGDVSK 62 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--------------H--T---CEEEEEECCTTS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH--------------c--C---CcEEEEeCCCCC
Confidence 46677 56889999999999999999875 5677766665543211 0 0 2333332 345
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
...++++++.+.....+=|++|+....
T Consensus 63 ~~~v~~~~~~~~~~~g~iDiLVnnAg~ 89 (244)
T d1edoa_ 63 EADVEAMMKTAIDAWGTIDVVVNNAGI 89 (244)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCCcccccccc
Confidence 556777888877766666788876543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.97 E-value=0.063 Score=45.72 Aligned_cols=94 Identities=9% Similarity=0.059 Sum_probs=56.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCH-HHHHhcc--CCCcEEEEecCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGHYTP-RDFVLSI--QRPRSVIILVKA 82 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~-~e~~~~l--~~~dvIil~vp~ 82 (503)
.+|.|+|+|.+|...++.+...|. .|.+.++++++.+.+.+.+... -+....+. ++..+.. ...|+||.++..
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~---~i~~~~~~~~~~~~~~~~~g~d~vid~~g~ 110 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH---VVDARRDPVKQVMELTRGRGVNVAMDFVGS 110 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSE---EEETTSCHHHHHHHHTTTCCEEEEEESSCC
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccce---eecCcccHHHHHHHhhCCCCceEEEEecCc
Confidence 369999999999998888877775 6788899999888777655321 01111122 2222211 236778877765
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGG 107 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~s 107 (503)
.. .++.....+.++-.++-.+
T Consensus 111 ~~----~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 111 QA----TVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp HH----HHHHGGGGEEEEEEEEECC
T ss_pred ch----HHHHHHHHHhCCCEEEEEe
Confidence 33 2333444455544444443
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=93.93 E-value=0.13 Score=46.82 Aligned_cols=84 Identities=11% Similarity=0.155 Sum_probs=54.5
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCC
Q 010702 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (503)
Q Consensus 8 ~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~ 82 (503)
|+.+| |.+-+|.++|+.|++.|++|.+.+|+. +..+++.+.. .+.- . .+++.+. +.+
T Consensus 5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~--------------~~~~-g---~~~~~~~~Dv~~ 66 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGL--------------AAQH-G---VKVLYDGADLSK 66 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHH--------------HHHH-T---SCEEEECCCTTS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHH--------------HHhc-C---CcEEEEECCCCC
Confidence 67777 567899999999999999999999974 4455444321 0000 1 2333333 344
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
..+++++++++.....+=|++|+....
T Consensus 67 ~~~v~~~~~~~~~~~G~iDiLVnnAG~ 93 (260)
T d1x1ta1 67 GEAVRGLVDNAVRQMGRIDILVNNAGI 93 (260)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCcEEEeeccc
Confidence 456777777776655555788876543
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=93.90 E-value=0.078 Score=48.59 Aligned_cols=85 Identities=13% Similarity=0.214 Sum_probs=53.7
Q ss_pred CCcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--c
Q 010702 6 LSRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTS-KVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--V 80 (503)
Q Consensus 6 ~~~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--v 80 (503)
.-|+.|| |.+-+|..+|+.|++.|++|.+.+|+.+ ..+.+.+..... ..+++.+. +
T Consensus 6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~-------------------g~~~~~~~~Dv 66 (261)
T d1geea_ 6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV-------------------GGEAIAVKGDV 66 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------------TCEEEEEECCT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhc-------------------CCcEEEEEccC
Confidence 3467777 5688999999999999999999999864 344433321100 02333322 3
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.+...++++++.+...+.+=|++|+....
T Consensus 67 t~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 95 (261)
T d1geea_ 67 TVESDVINLVQSAIKEFGKLDVMINNAGL 95 (261)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEeecccee
Confidence 34456677777666655455777776543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.90 E-value=0.023 Score=45.83 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=31.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
.+|.|||.|.+|.-+|..|++.|++|+++++++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence 4799999999999999999999999999998764
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=93.86 E-value=0.042 Score=49.57 Aligned_cols=67 Identities=7% Similarity=0.057 Sum_probs=42.8
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
++-|.| .+-+|..+|+.|++.|++|.+.+|+++.+++...... ........+++++.+.+-|++|..
T Consensus 6 ~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~-----~~Dv~~~~~~~~~~~g~iD~lVnn 73 (234)
T d1o5ia_ 6 GVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYV-----VCDLRKDLDLLFEKVKEVDILVLN 73 (234)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEE-----ECCTTTCHHHHHHHSCCCSEEEEC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEE-----EcchHHHHHHHHHHhCCCcEEEec
Confidence 344556 5789999999999999999999999876654321100 001122344555555556666654
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.84 E-value=0.054 Score=50.51 Aligned_cols=113 Identities=8% Similarity=0.023 Sum_probs=69.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEe-----------CChhHHHHHHHhhccc-CCCCeeeeCCHHHHHhccCCCc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYN-----------RTTSKVDETLDRAHRE-GQLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~d-----------r~~~~~~~l~~~~~~~-g~~~i~~~~s~~e~~~~l~~~d 74 (503)
++|.|-|.|++|...|+.|.+.|..|...+ .+.+.+.+........ +.... .-+..++... +||
T Consensus 37 ktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~D 112 (293)
T d1hwxa1 37 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKA--KIYEGSILEV--DCD 112 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTS--CBCCSCGGGC--CCS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeeccccc--ccCCcccccC--Ccc
Confidence 579999999999999999999999877553 3445555444332110 00000 1122333332 499
Q ss_pred EEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 75 SVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 75 vIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+++-|--.+.... +-.+.+ .-++|+...|... +.+..+.|.++|+.|+.
T Consensus 113 IliPaA~~~~I~~----~~a~~l-~ak~I~EgAN~P~--t~eA~~~L~~~gI~viP 161 (293)
T d1hwxa1 113 ILIPAASEKQLTK----SNAPRV-KAKIIAEGANGPT--TPQADKIFLERNIMVIP 161 (293)
T ss_dssp EEEECSSSSCBCT----TTGGGC-CCSEEECCSSSCB--CHHHHHHHHHTTCEEEC
T ss_pred EEeeccccccccH----HHHHHH-hhCEEeccCCCCC--CcchHHHHHHCCCEEeC
Confidence 9988865542222 222334 3468888888753 44556788999998875
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.83 E-value=0.025 Score=52.12 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=31.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
..||.|||.|.-|.+-|..|+++|++|+|+..+.
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4589999999999999999999999999998764
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=93.82 E-value=0.091 Score=47.71 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=52.4
Q ss_pred cEEEE-cc-c--HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC
Q 010702 8 RIGLA-GL-A--VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG 83 (503)
Q Consensus 8 ~IgII-Gl-G--~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~ 83 (503)
|+.+| |+ | -+|.++|+.|++.|++|.+.+|+.+..+...+.. .....+..+-.-+.+.
T Consensus 9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~------------------~~~~~~~~~~~D~~~~ 70 (256)
T d1ulua_ 9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLA------------------EALGGALLFRADVTQD 70 (256)
T ss_dssp CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH------------------HHTTCCEEEECCTTCH
T ss_pred CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhh------------------hccCcccccccccCCH
Confidence 45544 76 4 4999999999999999999999865444332211 1100122222234455
Q ss_pred hhHHHHHHHHHhcCCCCCEEEecCCCC
Q 010702 84 SPVDQTIAALSEHMSPGDCIIDGGNEW 110 (503)
Q Consensus 84 ~~v~~vl~~l~~~l~~g~iIId~st~~ 110 (503)
..++.+++.+.....+=+++|++....
T Consensus 71 ~~v~~~~~~~~~~~g~iDilVnnag~~ 97 (256)
T d1ulua_ 71 EELDALFAGVKEAFGGLDYLVHAIAFA 97 (256)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECCCCC
T ss_pred HHHHHHHHHHHHhcCCceEEEeccccc
Confidence 567777777766555557788765543
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=93.81 E-value=0.025 Score=45.38 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=30.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
.+|.|||.|.+|.-+|..|++.|.+|+++.|.+
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence 579999999999999999999999999999864
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.80 E-value=0.016 Score=54.50 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=31.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|.+|.|||+|.-|.+.|..|+++|++|.+++++..
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 34799999999999999999999999999998754
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.79 E-value=0.018 Score=51.39 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=30.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEK--GFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~ 40 (503)
+||+|||.|.-|..-|..|+++ |++|++|++.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 5899999999999999999765 789999998864
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=93.78 E-value=0.02 Score=54.40 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=31.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTTS 40 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~ 40 (503)
++||+|||+|.-|...|..|++.| ++|++++++..
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 468999999999999999998876 69999999854
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=93.75 E-value=0.1 Score=47.67 Aligned_cols=84 Identities=10% Similarity=0.083 Sum_probs=52.6
Q ss_pred cEEEEcc-c--HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 8 RIGLAGL-A--VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 8 ~IgIIGl-G--~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
++-|.|. | -+|.++|+.|+++|++|++.+|+++..+.+.+ +.+....+.++..-+....
T Consensus 7 ~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~------------------l~~~~~~~~~~~~d~~~~~ 68 (274)
T d2pd4a1 7 KGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRP------------------IAQELNSPYVYELDVSKEE 68 (274)
T ss_dssp EEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHH------------------HHHHTTCCCEEECCTTCHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH------------------HHhhCCceeEeeecccchh
Confidence 4556675 5 49999999999999999999998643222211 1111112444444555555
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++++++.+...+.+-+++|.+...
T Consensus 69 ~~~~~~~~~~~~~g~id~lV~nag~ 93 (274)
T d2pd4a1 69 HFKSLYNSVKKDLGSLDFIVHSVAF 93 (274)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECCCC
T ss_pred hHHHHHHHHHHHcCCCCeEEeeccc
Confidence 6666666666666555666665543
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.71 E-value=0.031 Score=48.98 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=30.5
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
+|.|||.|.-|...|..|+++|++|+++++++
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 58999999999999999999999999999885
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=93.69 E-value=0.031 Score=45.20 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=30.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
.+|.|||.|.+|.-+|..|++.|.+|+++++.+
T Consensus 31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence 579999999999999999999999999998775
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.54 E-value=0.031 Score=45.27 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=31.1
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
++|.|||.|.+|.-+|..|++.|.+|+++.|++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence 579999999999999999999999999999874
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=93.51 E-value=0.032 Score=50.09 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=32.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSK 41 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 41 (503)
.+|.|||.|..|...|..|+++|++|.++++++..
T Consensus 3 yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 3 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 57999999999999999999999999999988653
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.38 E-value=0.044 Score=43.94 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=30.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
.+|.|||.|.+|.-+|..|++.|.+|+++.++.
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD 55 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence 579999999999999999999999999998765
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.25 E-value=0.085 Score=45.17 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=57.0
Q ss_pred CcEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccC--CCCe--eee---CCHHHHHhccCCCcEEEE
Q 010702 7 SRIGLAGLA-VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREG--QLPL--TGH---YTPRDFVLSIQRPRSVII 78 (503)
Q Consensus 7 ~~IgIIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g--~~~i--~~~---~s~~e~~~~l~~~dvIil 78 (503)
+++.|||-+ .+|++||..|+++|..|+.++++.... +. ...... ..+. ... +.+.+.... +|+||.
T Consensus 30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~lk~~~~~---aDIvIs 103 (171)
T d1edza1 30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQK--FT-RGESLKLNKHHVEDLGEYSEDLLKKCSLD---SDVVIT 103 (171)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEE--EE-SCCCSSCCCCEEEEEEECCHHHHHHHHHH---CSEEEE
T ss_pred CEEEEECCccccHHHHHHHHHHCCCEEEEeccccccc--cc-cccceeeeeeccccccccchhHHhhcccc---CCEEEE
Confidence 579999966 569999999999999999998653210 00 000000 0000 001 124455555 999999
Q ss_pred ecCCChh-HHHHHHHHHhcCCCCCEEEecCCC
Q 010702 79 LVKAGSP-VDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 79 ~vp~~~~-v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
+++.+.- +. ..++++|.++||.+..
T Consensus 104 avG~p~~~i~------~d~ik~GavvIDvGi~ 129 (171)
T d1edza1 104 GVPSENYKFP------TEYIKEGAVCINFACT 129 (171)
T ss_dssp CCCCTTCCBC------TTTSCTTEEEEECSSS
T ss_pred ccCCCccccC------hhhcccCceEeecccc
Confidence 9987531 11 1357899999999865
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.18 E-value=0.11 Score=47.73 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=34.3
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHh
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDR 48 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 48 (503)
|+.+| | .+-+|.++|+.|++.|++|.+.+|+.++++++.++
T Consensus 15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~ 57 (269)
T d1xu9a_ 15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSH 57 (269)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 44555 6 47799999999999999999999999988877653
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.18 E-value=0.098 Score=44.56 Aligned_cols=73 Identities=10% Similarity=0.079 Sum_probs=49.6
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhcccCCCCeeee---CCHHHHHhcc--CCCcEEEEecC
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAHREGQLPLTGH---YTPRDFVLSI--QRPRSVIILVK 81 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~---~s~~e~~~~l--~~~dvIil~vp 81 (503)
+|.|+|+|-+|...+..++..|. +|.+.++++++.+...+.+... .+... +...+..... ...|++|.++.
T Consensus 31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~---~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G 107 (176)
T d2jhfa2 31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE---CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG 107 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE---EECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCee---EEecCCchhHHHHHHHHHhcCCCCEEEecCC
Confidence 59999999999999999999985 7888999999988777665431 01111 1222322211 23688888876
Q ss_pred CC
Q 010702 82 AG 83 (503)
Q Consensus 82 ~~ 83 (503)
..
T Consensus 108 ~~ 109 (176)
T d2jhfa2 108 RL 109 (176)
T ss_dssp CH
T ss_pred ch
Confidence 64
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.10 E-value=0.041 Score=45.13 Aligned_cols=34 Identities=12% Similarity=0.296 Sum_probs=31.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
.+|.|||.|.+|.-+|..|++.|.+|+++++.+.
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence 5799999999999999999999999999988764
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.08 E-value=0.13 Score=47.11 Aligned_cols=83 Identities=10% Similarity=0.200 Sum_probs=52.8
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCC
Q 010702 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTT-SKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (503)
Q Consensus 8 ~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~ 82 (503)
|+.+| |.+-+|.++|+.|+++|++|.+.+++. +..+++.+..... . .++.... +.+
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~----------------g---~~~~~~~~D~~~ 79 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN----------------G---SDAACVKANVGV 79 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhh----------------C---CceeeEeCCCCC
Confidence 67677 479999999999999999999988774 4444443321110 0 2333332 334
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.+.+++.++.+......=+++|.....
T Consensus 80 ~~~v~~~~~~~~~~~g~idilV~nag~ 106 (272)
T d1g0oa_ 80 VEDIVRMFEEAVKIFGKLDIVCSNSGV 106 (272)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCCcccccccc
Confidence 456777777776665555777766543
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=93.07 E-value=0.034 Score=50.98 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=29.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
+|.|||.|.+|.+.|..|+++|++|.++++..
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 58999999999999999999999999999753
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.94 E-value=0.087 Score=44.95 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=21.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCC
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKG 29 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G 29 (503)
+.+|+++|+|.+|+++++.|.++.
T Consensus 4 ~i~I~l~G~G~VG~~l~~~l~~~~ 27 (168)
T d1ebfa1 4 VVNVAVIGAGVVGSAFLDQLLAMK 27 (168)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCC
T ss_pred EEEEEEEeCCHHHHHHHHHHHHhH
Confidence 458999999999999999998754
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.55 E-value=0.053 Score=48.53 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=32.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
..+|.|||.|.-|...|..|++.|++|++++++++
T Consensus 49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence 35799999999999999999999999999998764
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.54 E-value=0.042 Score=43.67 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=31.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
.++.|||.|..|.-+|..|++.|.+|+++++.+.
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence 5799999999999999999999999999988753
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.48 E-value=0.073 Score=54.03 Aligned_cols=125 Identities=7% Similarity=0.054 Sum_probs=72.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc-ccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH-REGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.+|.|||+|..|..++.+|+..|. +++++|.+.-....+...-. ....++-..+....+.+..|- +++-+..+...
T Consensus 26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lN-p~v~i~~~~~~- 103 (529)
T d1yova1 26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELN-SDVSGSFVEES- 103 (529)
T ss_dssp CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTC-TTSBCCEESSC-
T ss_pred CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhC-CCCcEEEEcCC-
Confidence 589999999999999999999996 69999877655555443210 000000011111222233221 45444444432
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecccCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMGVSG 135 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~pvsg 135 (503)
..+.++.....+..-++||++. ..+.....+.+.+.+.++-|+.+.+.|
T Consensus 104 -~~~~~~~~~~~~~~~dvVv~~~-~~~~~~~~l~~~c~~~~ip~i~~~~~G 152 (529)
T d1yova1 104 -PENLLDNDPSFFCRFTVVVATQ-LPESTSLRLADVLWNSQIPLLICRTYG 152 (529)
T ss_dssp -HHHHHHSCGGGGGGCSEEEEES-CCHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred -chhhhhhHHHHhcCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 3444433333455567888764 345555567777778888888776554
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.35 E-value=0.15 Score=46.47 Aligned_cols=83 Identities=16% Similarity=0.306 Sum_probs=51.4
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEE-EeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--cCC
Q 010702 8 RIGLA--GLAVMGQNLALNVAEKGFPISV-YNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL--VKA 82 (503)
Q Consensus 8 ~IgII--GlG~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~--vp~ 82 (503)
|+.+| |.+-+|..+|+.|++.|++|.+ ++++.+..+++.++.... . .+++.+. +.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~----------------g---~~~~~~~~D~~~ 67 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL----------------G---AQGVAIQADISK 67 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHc----------------C---CCceEecCCCCC
Confidence 56666 5688999999999999999987 566766666655432111 0 2333322 334
Q ss_pred ChhHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 83 GSPVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 83 ~~~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
...++..++.+......=+++|+....
T Consensus 68 ~~~v~~~~~~~~~~~g~idilinnag~ 94 (259)
T d1ja9a_ 68 PSEVVALFDKAVSHFGGLDFVMSNSGM 94 (259)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHcCCCcEEEecccc
Confidence 456666676666554444567765543
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.054 Score=50.43 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=30.0
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
+|.|||.|.-|.+-|..|+++|++|++++++.
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 48999999999999999999999999999765
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=92.27 E-value=0.05 Score=49.61 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=32.3
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhH
Q 010702 6 LSRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSK 41 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~ 41 (503)
++||-|+|. |.+|+.++..|.++||+|.+.+|++..
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~ 39 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA 39 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence 468999985 999999999999999999999997653
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.26 E-value=0.091 Score=44.92 Aligned_cols=43 Identities=12% Similarity=0.001 Sum_probs=35.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA 49 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~ 49 (503)
.+|.|.| .|.+|...++.+...|.+|.+..+++++.+.+.+.+
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~G 70 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLG 70 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTC
T ss_pred CEEEEECCCCCcccccchhhccccccceeeeccccccccccccc
Confidence 3688878 599999999999899999999999988877666544
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=92.25 E-value=0.047 Score=51.20 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=31.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
+|.|||+|.-|..+|..|.+.|++|.+++++++
T Consensus 9 dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 699999999999999999999999999999865
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.18 E-value=0.24 Score=44.59 Aligned_cols=175 Identities=13% Similarity=0.123 Sum_probs=96.4
Q ss_pred CcEEEEcccHHHHHHHHHHHh-CCCcEE-EEeCC----------hhHHHHHHHhh-cccCCCCeeeeCCHHHHHhccCCC
Q 010702 7 SRIGLAGLAVMGQNLALNVAE-KGFPIS-VYNRT----------TSKVDETLDRA-HREGQLPLTGHYTPRDFVLSIQRP 73 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~-~G~~V~-v~dr~----------~~~~~~l~~~~-~~~g~~~i~~~~s~~e~~~~l~~~ 73 (503)
++|.|-|.|.+|..+|+.|.+ .|..|. +.|.+ .+.+.+..... ...+..+... -+.+++... +|
T Consensus 33 ~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~--~~ 109 (239)
T d1gtma1 33 KTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATN-ITNEELLEL--EV 109 (239)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEE-ECHHHHHHS--CC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCee-ecccccccc--cc
Confidence 689999999999999999975 588765 44543 22222222221 1100001122 255666653 49
Q ss_pred cEEEEecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEeccc--CCCChhhhhcCCcccCCCC
Q 010702 74 RSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGMG--VSGGEEGARHGPSLMPGGS 151 (503)
Q Consensus 74 dvIil~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~p--vsgg~~~a~~G~~i~~gg~ 151 (503)
|+++-|-..+...++ ..+.+ .-++|+...|... +.+..+.|.++|+.|+.-- -+||...
T Consensus 110 DIl~PcA~~~~I~~~----~a~~i-~ak~I~e~AN~p~--t~ea~~~L~~rgI~~iPD~~aNAGGVi~------------ 170 (239)
T d1gtma1 110 DVLAPAAIEEVITKK----NADNI-KAKIVAEVANGPV--TPEADEILFEKGILQIPDFLCNAGGVTV------------ 170 (239)
T ss_dssp SEEEECSCSCCBCTT----GGGGC-CCSEEECCSSSCB--CHHHHHHHHHTTCEEECHHHHTTHHHHH------------
T ss_pred cEEeeccccccccHH----HHHhc-cccEEEecCCCCC--CHHHHHHHHHCCCEEecchhhCCcceeE------------
Confidence 999988765432222 23334 3468888888764 3345677899999887532 2222210
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcEEEeCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010702 152 FEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELAEIF 224 (503)
Q Consensus 152 ~~a~~~v~~ll~~ig~~~~~~~~v~~~G~~G~g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~ 224 (503)
..++. .+... ...+. ..-+.+.++..+...+.+.+..+++.+ +++.+...++
T Consensus 171 -s~~E~----~qn~~-------~~~w~--------~~~v~~~l~~~m~~~~~~v~~~a~~~~-~~~r~aA~~~ 222 (239)
T d1gtma1 171 -SYFEW----VQNIT-------GYYWT--------IEEVRERLDKKMTKAFYDVYNIAKEKN-IHMRDAAYVV 222 (239)
T ss_dssp -HHHHH----HHHHH-------CCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH
T ss_pred -eeeee----ccccc-------ccccc--------HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH
Confidence 11222 22222 00110 112344455556666777888888887 8877665553
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.13 E-value=0.13 Score=44.93 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=35.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRA 49 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~ 49 (503)
.+|.|+|+|.+|...+..+...|. +|.+.|+++++.+.+.+.+
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G 70 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG 70 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc
Confidence 369999999999887777767776 6888999999988776654
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.11 E-value=0.34 Score=38.97 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=77.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
.||-|-|. |.-|+-.+..+.+-|-+|..- .+|.+ .|... .++-.+++.+|+++.. .+|.-++.||+..+
T Consensus 16 TrVivQGiTG~~G~~ht~~m~~YGT~iVaG-VtPgK------gG~~~--~giPVf~tV~eA~~~~-~~daSvIfVPp~~a 85 (130)
T d1euca1 16 TKVICQGFTGKQGTFHSQQALEYGTNLVGG-TTPGK------GGKTH--LGLPVFNTVKEAKEQT-GATASVIYVPPPFA 85 (130)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEE-ECTTC------TTCEE--TTEEEESSHHHHHHHH-CCCEEEECCCHHHH
T ss_pred CeEEEEcCCCcHHHHHHHHHHHhcCCeEEe-eccCC------CCccc--cCccchhhHHHHHHhc-CCcEEEEecCHHHH
Confidence 57999997 999999999999999875532 23332 11110 1578899999999854 38999999999877
Q ss_pred HHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhc-CccEec
Q 010702 86 VDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQK-GLLYLG 130 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~-gi~~i~ 130 (503)
.+.+++.+...++ .+|+-+-.....+..++.+.+.++ +.++++
T Consensus 86 ~dAi~EAi~agI~--liV~ITEgIPv~Dm~~i~~~~~~~~~~~liG 129 (130)
T d1euca1 86 AAAINEAIDAEVP--LVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 129 (130)
T ss_dssp HHHHHHHHHTTCS--EEEECCCCCCHHHHHHHHHHHTTCSSCEEEC
T ss_pred HHHHHHHHhCCCC--EEEEecCCCCHHHHHHHHHHHHhCCCcEEeC
Confidence 7777787776553 345555555666666776666444 355553
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.02 E-value=0.043 Score=44.29 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=31.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
.++.|||.|.+|.-+|..|++.|.+|++..|++.
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence 4799999999999999999999999999988764
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=91.99 E-value=0.071 Score=50.52 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=33.2
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHH
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKV 42 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~ 42 (503)
+++|.|+| .|.+|+.++..|.++||+|.+..|++.+.
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~ 40 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL 40 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence 46899998 59999999999999999999999987654
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.99 E-value=0.058 Score=48.95 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=35.1
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010702 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (503)
Q Consensus 7 ~~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 47 (503)
-|+.+| |.+-+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~ 48 (245)
T d2ag5a1 6 GKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK 48 (245)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 367777 67999999999999999999999999887765543
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.71 E-value=0.036 Score=49.23 Aligned_cols=34 Identities=9% Similarity=0.097 Sum_probs=30.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC-------CcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG-------FPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G-------~~V~v~dr~~~ 40 (503)
.||+|||.|.-|.+-|..|+++| ++|++|++.+.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 38999999999999999999988 47999998864
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=91.71 E-value=0.077 Score=42.24 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=31.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
++|.|||.|.+|.-+|..|++.|.+|+++.+.+.
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence 5799999999999999999999999999998764
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.54 E-value=0.19 Score=45.35 Aligned_cols=82 Identities=13% Similarity=0.147 Sum_probs=51.6
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~ 84 (503)
.|-|.| .+-+|..+|+.|++.|+ .|.+..|+.++.+++.+... .. ..++.+=+.+..
T Consensus 5 tilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~-----------------~~---~~~~~~Dvs~~~ 64 (250)
T d1yo6a1 5 SVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKD-----------------SR---VHVLPLTVTCDK 64 (250)
T ss_dssp EEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCC-----------------TT---EEEEECCTTCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhC-----------------Cc---eEEEEEecCCHH
Confidence 354445 58899999999999996 57778999988776653210 01 223333345555
Q ss_pred hHHHHHHHHHhcCCC--CCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSP--GDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~--g~iIId~st~ 109 (503)
.++++++.+...+.. =+++|++...
T Consensus 65 ~v~~~~~~i~~~~~~~~idilinnAG~ 91 (250)
T d1yo6a1 65 SLDTFVSKVGEIVGSDGLSLLINNAGV 91 (250)
T ss_dssp HHHHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEcCcc
Confidence 677777766554322 3677776543
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=91.46 E-value=0.076 Score=47.94 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=29.3
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
|||.|| | .+-+|.++|+.|++.|++|.+.||+.+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 577666 5 688999999999999999999998754
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.39 E-value=0.14 Score=46.46 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=37.3
Q ss_pred CCCCcEEEE-c-ccHHHHHHHHHHHh---CCCcEEEEeCChhHHHHHHHh
Q 010702 4 SALSRIGLA-G-LAVMGQNLALNVAE---KGFPISVYNRTTSKVDETLDR 48 (503)
Q Consensus 4 ~~~~~IgII-G-lG~mG~~lA~~L~~---~G~~V~v~dr~~~~~~~l~~~ 48 (503)
...-||+|| | .+-+|.++|+.|++ +|++|.+.+|++++++++.++
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~ 52 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEE 52 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHH
Confidence 344589999 5 47899999999986 799999999999988777653
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.35 E-value=0.41 Score=40.28 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=37.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH 50 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~ 50 (503)
.+|.|+|+|.+|...+..++..|- .|++.|+++++.+...+.|.
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA 74 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA 74 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC
Confidence 369999999999999988888876 68889999999888777654
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=91.17 E-value=0.048 Score=49.61 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=30.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
|||-|.|. |.+|+.|+..|.++||+|...||+.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 68999996 9999999999999999999999864
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=91.10 E-value=0.066 Score=50.21 Aligned_cols=33 Identities=9% Similarity=0.227 Sum_probs=30.0
Q ss_pred cEEEEcccHHHHHHHHHHH-----hCCCcEEEEeCChh
Q 010702 8 RIGLAGLAVMGQNLALNVA-----EKGFPISVYNRTTS 40 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~-----~~G~~V~v~dr~~~ 40 (503)
.|.|||.|..|..+|..|+ ++|++|+++++++.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 6999999999999999996 58999999998764
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=91.07 E-value=0.071 Score=48.18 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=34.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL 46 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 46 (503)
.+|-|||.|..|...|..|+++|++|.++++++..-..+.
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~ 44 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKIL 44 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceE
Confidence 4799999999999999999999999999999876544444
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=90.91 E-value=0.076 Score=42.97 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=31.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
.++.|||.|.+|.-+|..|++.|.+|++..+.+.
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~ 60 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG 60 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence 4799999999999999999999999999988763
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.87 E-value=0.54 Score=40.08 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=70.4
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCC-CCeee-eCCHHHHHhccCCCcEEEEecCCChh
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQ-LPLTG-HYTPRDFVLSIQRPRSVIILVKAGSP 85 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~-~~i~~-~~s~~e~~~~l~~~dvIil~vp~~~~ 85 (503)
+|-=||+|.=..+ ..|++.+.+|+.+|++++.++.+.+.....|- .+++. ..+..+........|.|++..+. ..
T Consensus 36 ~VLDiGcGsG~~s--~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~-~~ 112 (186)
T d1l3ia_ 36 VAVDVGCGTGGVT--LELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG-GE 112 (186)
T ss_dssp EEEEESCTTSHHH--HHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT-TC
T ss_pred EEEEEECCeEccc--ccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCcc-cc
Confidence 5666777653333 34566677999999999988776654322210 03433 35667776666678999877665 46
Q ss_pred HHHHHHHHHhcCCCCCEE-EecCCCChhhHHHHHHHHHhcC
Q 010702 86 VDQTIAALSEHMSPGDCI-IDGGNEWYLNTERRIHEASQKG 125 (503)
Q Consensus 86 v~~vl~~l~~~l~~g~iI-Id~st~~~~~t~~~~~~l~~~g 125 (503)
.+++++.+...|++|..+ +... .........+.+...+
T Consensus 113 ~~~~~~~~~~~LkpgG~lvi~~~--~~e~~~~~~~~l~~~~ 151 (186)
T d1l3ia_ 113 LQEILRIIKDKLKPGGRIIVTAI--LLETKFEAMECLRDLG 151 (186)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEC--BHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHhCcCCEEEEEee--ccccHHHHHHHHHHcC
Confidence 788888888888776644 4332 2334444445555554
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.84 E-value=0.58 Score=39.17 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=35.6
Q ss_pred cEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHhhc
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGF-PISVYNRTTSKVDETLDRAH 50 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~ 50 (503)
+|.|+|+|-+|...++.+...|. .|.+.++++++.+...+.|.
T Consensus 31 tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa 74 (176)
T d2fzwa2 31 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA 74 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC
T ss_pred EEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC
Confidence 69999999999999988888896 57778899988877666553
|
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=90.73 E-value=0.11 Score=43.82 Aligned_cols=117 Identities=19% Similarity=0.138 Sum_probs=76.3
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH------HHHHHhccCCcchhHHhhhhhhccccccCCCchhHH
Q 010702 184 GNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNAELA------EIFDEWNKGELESFLVEITADIFKVKDEYGEGELVD 257 (503)
Q Consensus 184 g~~vK~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~------~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld 257 (503)
....++-.|.....+...+.|+..+++..| -+++++. |++-.-.....+++.+.. .+ ..+..++
T Consensus 23 ~~gl~~g~N~~aali~~g~~Em~~~~~~~g-~~~~t~~~laGlGDli~Tc~s~~sRN~~~G~---~l------~~g~~~~ 92 (160)
T d1n1ea1 23 ANGLGMGLNARAALIMRGLLEIRDLTAALG-GDGSAVFGLAGLGDLQLTCSSELSRNFTVGK---KL------GKGLPIE 92 (160)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSTTTTSTTTHHHHHHHTTCTTSHHHHHHH---HH------HHTCCHH
T ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHhC-CCccceeccccchhheeeeecchhHHHHHHH---HH------hccccHH
Confidence 333456678888999999999999999998 5555432 222110011111221111 11 1234667
Q ss_pred HHHhhcCCcchHHHHHH----HHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHhccC
Q 010702 258 KILDKTGMKGTGKWTVQ----QAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVLKEA 312 (503)
Q Consensus 258 ~i~~~~~~kgtG~~~~~----~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~~~~ 312 (503)
.+.+..+|+.+|..++. .+.++++.+|++.+. .+.+...++++..+..++..|
T Consensus 93 e~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~v--y~Il~~~~~p~~~i~~Lm~r~ 149 (160)
T d1n1ea1 93 EIQRTSKAVAEGVATADPLMRLAKQLKVKMPLCHQI--YEIVYKKKNPRDALADLLSCG 149 (160)
T ss_dssp HHHHSCCSCCHHHHHHHHHHHHHHHHTCCCHHHHHH--HHHHHSCCCHHHHHHHHTTSC
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHcCCCCcHHHHH--HHHHhCcCCHHHHHHHHHCCC
Confidence 77778888999977764 567889999999853 467777788888888887544
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=90.54 E-value=0.28 Score=44.60 Aligned_cols=117 Identities=10% Similarity=-0.010 Sum_probs=64.5
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEE-EeCC----------hhHHHHHHHh-hcc-cCCC-------CeeeeCCHHHH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISV-YNRT----------TSKVDETLDR-AHR-EGQL-------PLTGHYTPRDF 66 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v-~dr~----------~~~~~~l~~~-~~~-~g~~-------~i~~~~s~~e~ 66 (503)
++|.|-|.|++|...|+.|.+.|.+|.. .|.+ .+...+.... ... .+.. ..... +.+++
T Consensus 37 ~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 115 (255)
T d1bgva1 37 KTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF-PGEKP 115 (255)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE-ETCCG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee-chhhc
Confidence 5899999999999999999999998764 3432 2222222111 000 0000 01111 12222
Q ss_pred HhccCCCcEEEEecCCChhHHHHHHHHHhcCCCC-CEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 67 VLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPG-DCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 67 ~~~l~~~dvIil~vp~~~~v~~vl~~l~~~l~~g-~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
... +||+++-|-..+....+.++.|.. .+ ++|+...|... +.+.....++++|+.++.
T Consensus 116 ~~~--~~DiliPcA~~~~I~~~~a~~l~a---~~ck~I~EgAN~p~-t~ea~~~ll~~~gI~vvP 174 (255)
T d1bgva1 116 WGQ--KVDIIMPCATQNDVDLEQAKKIVA---NNVKYYIEVANMPT-TNEALRFLMQQPNMVVAP 174 (255)
T ss_dssp GGS--CCSEEECCSCTTCBCHHHHHHHHH---TTCCEEECCSSSCB-CHHHHHHHHHCTTCEEEC
T ss_pred ccc--cccEEeeccccccccHHHHHhhhh---cCceEEecCCCCCc-chHHHHHHHHhcCCEEeh
Confidence 221 489988776554333444555543 12 57888777653 333334456677887763
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.50 E-value=0.84 Score=42.24 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=53.1
Q ss_pred cEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccC-CCcEEEEecCCCh
Q 010702 8 RIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQ-RPRSVIILVKAGS 84 (503)
Q Consensus 8 ~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~-~~dvIil~vp~~~ 84 (503)
|+.|| | .+-+|..+|+.|+++|++|.+.||+.+..... ......+++++.+. ....+..-+.+..
T Consensus 8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 75 (302)
T d1gz6a_ 8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVG------------KGSSAADKVVEEIRRRGGKAVANYDSVE 75 (302)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCB------------CCSHHHHHHHHHHHHTTCEEEEECCCGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhh------------hhHHHHHHHHHHHhhcccccccccchHH
Confidence 67777 4 57899999999999999999998875421000 00011111111110 1233344444445
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++++++.+.....+=|++|+....
T Consensus 76 ~~~~~v~~~~~~~G~iDiLVnNAGi 100 (302)
T d1gz6a_ 76 AGEKLVKTALDTFGRIDVVVNNAGI 100 (302)
T ss_dssp GHHHHHHHHHHHTSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCcc
Confidence 6777777777666555788876443
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=90.50 E-value=0.49 Score=42.88 Aligned_cols=41 Identities=12% Similarity=0.332 Sum_probs=31.6
Q ss_pred CcEEEE--cccHHHHHHHHHHHhCCCcEEEEe-CChhHHHHHHH
Q 010702 7 SRIGLA--GLAVMGQNLALNVAEKGFPISVYN-RTTSKVDETLD 47 (503)
Q Consensus 7 ~~IgII--GlG~mG~~lA~~L~~~G~~V~v~d-r~~~~~~~l~~ 47 (503)
+-|+|| |.+-+|.++|+.|+++|++|.+.+ |+.+..+++.+
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~ 45 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSA 45 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHH
Confidence 358888 457899999999999999998865 55555555544
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.49 E-value=0.056 Score=48.35 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=47.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHhhcccCCCCeee--eCCHHHHHhccCCCcEEEEecC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGF--PISVYNRTTSKVDETLDRAHREGQLPLTG--HYTPRDFVLSIQRPRSVIILVK 81 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~i~~--~~s~~e~~~~l~~~dvIil~vp 81 (503)
++|-|.| +|.+|+.++..|.++|. +|.+.+|++.....-.... ..... ..+++++.+.++.+|+++.++.
T Consensus 15 k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~-----i~~~~~D~~~~~~~~~~~~~~d~vi~~~~ 89 (232)
T d2bkaa1 15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKN-----VNQEVVDFEKLDDYASAFQGHDVGFCCLG 89 (232)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGG-----CEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccce-----eeeeeeccccccccccccccccccccccc
Confidence 5799997 69999999999999995 7999999865422111110 01111 2244555555666888888775
Q ss_pred C
Q 010702 82 A 82 (503)
Q Consensus 82 ~ 82 (503)
.
T Consensus 90 ~ 90 (232)
T d2bkaa1 90 T 90 (232)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=90.29 E-value=0.4 Score=43.19 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=29.7
Q ss_pred cEEEEcc-cH--HHHHHHHHHHhCCCcEEEEeCChhHH
Q 010702 8 RIGLAGL-AV--MGQNLALNVAEKGFPISVYNRTTSKV 42 (503)
Q Consensus 8 ~IgIIGl-G~--mG~~lA~~L~~~G~~V~v~dr~~~~~ 42 (503)
++-|.|+ |. +|.++|+.|+++|.+|.+.+|+.++.
T Consensus 8 ~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~ 45 (268)
T d2h7ma1 8 RILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL 45 (268)
T ss_dssp EEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHH
Confidence 4556685 65 99999999999999999999998765
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=90.10 E-value=0.49 Score=42.38 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=28.8
Q ss_pred cEEEEcc-c--HHHHHHHHHHHhCCCcEEEEeCChhHHHHH
Q 010702 8 RIGLAGL-A--VMGQNLALNVAEKGFPISVYNRTTSKVDET 45 (503)
Q Consensus 8 ~IgIIGl-G--~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 45 (503)
+|-|.|. | -+|.++|+.|++.|++|.+.+|+++..+.+
T Consensus 7 ~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~ 47 (258)
T d1qsga_ 7 RILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV 47 (258)
T ss_dssp EEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred EEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 3444465 4 388999999999999999999986644433
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=90.08 E-value=0.095 Score=49.33 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=32.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHH
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGF-PISVYNRTTSKVDET 45 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l 45 (503)
|||-|.| .|.+|+.++..|+++|+ +|.+.|+.......+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~ 41 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF 41 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGG
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhh
Confidence 5899997 59999999999999995 799998876554433
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=89.89 E-value=0.12 Score=48.59 Aligned_cols=31 Identities=13% Similarity=0.392 Sum_probs=28.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNR 37 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr 37 (503)
|||-|+| .|.+|+.|+..|++.||+|.+.||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 6899997 699999999999999999999986
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=89.65 E-value=0.11 Score=44.83 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=29.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCC--CcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKG--FPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G--~~V~v~dr~~ 39 (503)
|||.|||.|..|..+|..|.+.+ .+|++++|++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 68999999999999999998864 5799998764
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=89.36 E-value=0.12 Score=43.06 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=29.7
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC--cEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF--PISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~--~V~v~dr~~ 39 (503)
+||.|||.|..|..+|..|.+.|. +|+++++++
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 589999999999999999999885 688998876
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.25 E-value=0.28 Score=41.51 Aligned_cols=43 Identities=12% Similarity=-0.001 Sum_probs=36.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhc
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAH 50 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~ 50 (503)
+|.|+| .|.+|....+.....|.+|++.++++++.+.+.+.|.
T Consensus 31 ~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa 74 (179)
T d1qora2 31 QFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA 74 (179)
T ss_dssp EEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred EEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC
Confidence 688884 5669998888888899999999999999888777654
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.18 E-value=0.16 Score=47.72 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=28.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNR 37 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr 37 (503)
+||-|.| .|.+|+.|+..|+++|++|++.|+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 5898887 699999999999999999999975
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=89.09 E-value=0.48 Score=37.69 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=59.4
Q ss_pred CCcEEEEccc-----------HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCc
Q 010702 6 LSRIGLAGLA-----------VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPR 74 (503)
Q Consensus 6 ~~~IgIIGlG-----------~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~d 74 (503)
.+||-|||.| ..+...++.|.+.|+++.+.|-||+.+ .++++ + +|
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV-----------------std~d-~------aD 59 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV-----------------STDYD-T------SD 59 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS-----------------TTSTT-S------SS
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh-----------------hcChh-h------cC
Confidence 4689999998 677888999999999999999998742 12222 1 45
Q ss_pred EEE-EecCCChhHHHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEec
Q 010702 75 SVI-ILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 75 vIi-l~vp~~~~v~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
.+. ..+.. ..+.++++ .-+|..+++-.+.- +...+...|.+.|+..++
T Consensus 60 ~lYfeplt~-e~v~~Ii~----~E~p~~ii~~~GGQ---talnla~~L~~~gv~iLG 108 (121)
T d1a9xa4 60 RLYFEPVTL-EDVLEIVR----IEKPKGVIVQYGGQ---TPLKLARALEAAGVPVIG 108 (121)
T ss_dssp EEECCCCSH-HHHHHHHH----HHCCSEEECSSSTH---HHHTTHHHHHHTTCCBCS
T ss_pred ceEEccCCH-HHHHHHHH----HhCCCEEEeehhhh---hHHHHHHHHHHcCCcEEC
Confidence 444 34433 23444432 23466777766653 445566677777765443
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=89.05 E-value=1.1 Score=39.84 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=28.9
Q ss_pred EEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHH
Q 010702 9 IGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSKV 42 (503)
Q Consensus 9 IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~ 42 (503)
++|| |.+-+|.++|+.|+++|++|.+.+|+.++.
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~ 38 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA 38 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence 5666 457799999999999999999999986653
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=88.71 E-value=0.28 Score=44.54 Aligned_cols=97 Identities=18% Similarity=0.081 Sum_probs=65.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhH
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPV 86 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v 86 (503)
.||++||. + ++...+.+.|.++.+++|+|.. + .......++++.. ||+||++-.+ -+
T Consensus 123 ~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~~-------g-------d~p~~~~~~lLp~---aD~viiTGsT--lv 179 (251)
T d2h1qa1 123 KKVGVVGH--F--PHLESLLEPICDLSILEWSPEE-------G-------DYPLPASEFILPE---CDYVYITCAS--VV 179 (251)
T ss_dssp SEEEEESC--C--TTHHHHHTTTSEEEEEESSCCT-------T-------CEEGGGHHHHGGG---CSEEEEETHH--HH
T ss_pred CEEEEEec--c--hhHHHHHhcCCcEEEEeCCCCC-------C-------CCCchHHHHhhhc---CCEEEEEech--hh
Confidence 58999986 4 6777788999999999999741 1 2334445666666 9999988543 57
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCChhhHHHHHHHHHhcCccEecc
Q 010702 87 DQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQKGLLYLGM 131 (503)
Q Consensus 87 ~~vl~~l~~~l~~g~iIId~st~~~~~t~~~~~~l~~~gi~~i~~ 131 (503)
...++.|+.+.++...|+-.+-+.|-.- . +-+.|+.++..
T Consensus 180 N~Tl~~LL~~~~~a~~vvl~GPS~p~~P----~-lf~~Gv~~lag 219 (251)
T d2h1qa1 180 DKTLPRLLELSRNARRITLVGPGTPLAP----V-LFEHGLQELSG 219 (251)
T ss_dssp HTCHHHHHHHTTTSSEEEEESTTCCCCG----G-GGGTTCSEEEE
T ss_pred cCCHHHHHHhCCcCCEEEEECCCcccCH----H-HHhcCCceEeE
Confidence 7788999998877765554444433221 1 22357777764
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.57 E-value=0.29 Score=43.80 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=29.2
Q ss_pred CcEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 010702 7 SRIGLA-G-LAVMGQNLALNVAEKGFPISVYNRTTSK 41 (503)
Q Consensus 7 ~~IgII-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~ 41 (503)
-|+.+| | .+-+|..+|+.|++.|++|.+.+|+.+.
T Consensus 7 gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~ 43 (237)
T d1uzma1 7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA 43 (237)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence 356666 5 5789999999999999999999998653
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=88.47 E-value=0.28 Score=46.11 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=35.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLD 47 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 47 (503)
++|.|.| .|.+|+.++..|.++||+|.+..|+.++.+.+..
T Consensus 12 k~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~ 53 (342)
T d1y1pa1 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQK 53 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHH
Confidence 4799997 6999999999999999999999999887666543
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=88.40 E-value=0.15 Score=47.93 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=34.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHH
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDET 45 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 45 (503)
+||-|.| .|.+|+.++..|.++|++|.+++|+..+...+
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~ 48 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSL 48 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHH
Confidence 6899998 79999999999999999999999987654433
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=87.91 E-value=0.18 Score=46.06 Aligned_cols=33 Identities=12% Similarity=0.319 Sum_probs=30.2
Q ss_pred cEEEEcccHHHHHHHHHHHh-CCCcEEEEeCChh
Q 010702 8 RIGLAGLAVMGQNLALNVAE-KGFPISVYNRTTS 40 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~-~G~~V~v~dr~~~ 40 (503)
+|.|||.|.-|...|..|++ .|++|+++++.+.
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 59999999999999999987 5999999998864
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.67 E-value=0.4 Score=40.92 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=58.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhcc--CCCcEEEEecCCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSI--QRPRSVIILVKAGS 84 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l--~~~dvIil~vp~~~ 84 (503)
+|-|.| .|-+|....+.....|.+|+...+++++.+.+.+.+... -+......++.+..+ +..|+|+-++...
T Consensus 34 ~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~---vi~~~~~~~~~~~~~~~~gvD~vid~vgg~- 109 (176)
T d1xa0a2 34 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE---VLAREDVMAERIRPLDKQRWAAAVDPVGGR- 109 (176)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE---EEECC---------CCSCCEEEEEECSTTT-
T ss_pred EEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccce---eeecchhHHHHHHHhhccCcCEEEEcCCch-
Confidence 588888 699999988888899999999999999988887766532 111112223333222 2468888887653
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
. ++..+..+.++-.++.++..
T Consensus 110 ~----~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 110 T----LATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp T----HHHHHHTEEEEEEEEECSCC
T ss_pred h----HHHHHHHhCCCceEEEeecc
Confidence 3 33444455556566665544
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=87.65 E-value=0.13 Score=46.66 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=48.6
Q ss_pred EEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCChhHHHH
Q 010702 11 LAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQT 89 (503)
Q Consensus 11 IIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~~~v~~v 89 (503)
|-|. +-+|.++|+.|++.|++|.+.+|+.++.+++.+.... ...+|+ .+..+++++
T Consensus 5 VTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~------------------~~~~dv-----~~~~~~~~~ 61 (252)
T d1zmta1 5 VTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAET------------------YPQLKP-----MSEQEPAEL 61 (252)
T ss_dssp ESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHH------------------CTTSEE-----CCCCSHHHH
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCc------------------EEEecc-----CCHHHHHHH
Confidence 4454 5699999999999999999999998887776543211 001442 123456677
Q ss_pred HHHHHhcCCCCCEEEecC
Q 010702 90 IAALSEHMSPGDCIIDGG 107 (503)
Q Consensus 90 l~~l~~~l~~g~iIId~s 107 (503)
++++.....+=|++|+..
T Consensus 62 ~~~~~~~~G~iDiLVnNA 79 (252)
T d1zmta1 62 IEAVTSAYGQVDVLVSND 79 (252)
T ss_dssp HHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHcCCCCEEEECC
Confidence 766666554446777643
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=87.61 E-value=1.1 Score=40.16 Aligned_cols=83 Identities=7% Similarity=0.085 Sum_probs=50.3
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec--CCC-h
Q 010702 9 IGLAG-LAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV--KAG-S 84 (503)
Q Consensus 9 IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v--p~~-~ 84 (503)
|-|.| .+-+|..+|+.|++.|.+|.+..|+.++.+.+.+... ......+.+..+ ..+ .
T Consensus 8 vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~------------------~~~~~~~~~~~~d~~~~~~ 69 (254)
T d1sbya1 8 VIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKA------------------INPKVNITFHTYDVTVPVA 69 (254)
T ss_dssp EEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHH------------------HCTTSEEEEEECCTTSCHH
T ss_pred EEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHh------------------hCCCCCEEEEEeecCCCHH
Confidence 44445 5679999999999999999888766655444332110 000123333332 212 3
Q ss_pred hHHHHHHHHHhcCCCCCEEEecCCC
Q 010702 85 PVDQTIAALSEHMSPGDCIIDGGNE 109 (503)
Q Consensus 85 ~v~~vl~~l~~~l~~g~iIId~st~ 109 (503)
.++++++.+.....+=|++|++...
T Consensus 70 ~~~~~~~~~~~~~g~iDilvnnAG~ 94 (254)
T d1sbya1 70 ESKKLLKKIFDQLKTVDILINGAGI 94 (254)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEeCCCC
Confidence 5677777777665555788876554
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.53 E-value=0.24 Score=46.38 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=29.2
Q ss_pred CcEE-EEc-ccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 7 SRIG-LAG-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~Ig-IIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
+||+ |.| .|.+|+.++..|.++||+|.+.||.+.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~ 36 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS 36 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 4785 555 699999999999999999999999653
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Probab=87.40 E-value=1.4 Score=35.71 Aligned_cols=122 Identities=12% Similarity=0.034 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEecCCC-----hhHHHHH
Q 010702 16 VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAG-----SPVDQTI 90 (503)
Q Consensus 16 ~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~vp~~-----~~v~~vl 90 (503)
.|...++..+.+.|++|.+++.+....+ ++...+.++|.|++..|.. ..++..+
T Consensus 18 ~vA~~Ia~~l~~~g~~v~~~~~~~~~~~---------------------~~~~~~~~~d~ii~Gspt~~g~~~~~~~~~l 76 (149)
T d1ycga1 18 KMAHALMDGLVAGGCEVKLFKLSVSDRN---------------------DVIKEILDARAVLVGSPTINNDILPVVSPLL 76 (149)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEGGGSCHH---------------------HHHHHHHHCSEEEEECCCBTTBCCGGGHHHH
T ss_pred HHHHHHHHHHHhcCCeeEEEEccccchH---------------------HHhhhhhhCCeEEEEeecccCCCCHHHHHHH
Confidence 4677788888889999999876543222 2222222289999999853 3577788
Q ss_pred HHHHhcCCCCCEEEecCC-C-ChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHHHHHHHHHHHHHHhcc
Q 010702 91 AALSEHMSPGDCIIDGGN-E-WYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQ 168 (503)
Q Consensus 91 ~~l~~~l~~g~iIId~st-~-~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~a~~~v~~ll~~ig~~ 168 (503)
+.+...-.++..+.-.++ + .....+.+.+.+...|...+..|..-. . ..-+++.+++++++-+.++.+
T Consensus 77 ~~l~~~~~~~k~~~~fgs~g~~g~a~~~l~~~l~~~g~~~v~~~~~~~-----~-----~~P~~~dl~~~~e~g~~ia~k 146 (149)
T d1ycga1 77 DDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAEPGPTV-----Q-----WVPRGEDLQRCYELGRKIAAR 146 (149)
T ss_dssp HHHHHHCCSSCEEEEEEEESSSCCHHHHHHHHHHHTTCEESCSSCCEE-----E-----SSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCCEEEEEecccCCchhHHHHHHHHHHCCCEEeccceEEE-----c-----ccCCHHHHHHHHHHHHHHHHH
Confidence 777664334544333322 1 223456677788888887775432100 0 011456677777777777643
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=86.76 E-value=0.26 Score=42.82 Aligned_cols=32 Identities=13% Similarity=-0.073 Sum_probs=29.8
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
+|.|||.|.-|...|..+++.|.+|.++++++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~ 35 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE 35 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence 58999999999999999999999999999863
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=86.71 E-value=4.6 Score=32.45 Aligned_cols=128 Identities=13% Similarity=0.068 Sum_probs=74.1
Q ss_pred CcEEEE-c--cc---HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLA-G--LA---VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgII-G--lG---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
.||.|| + .| .|...++..|.+.|++|.+++.+.... ++....+.++|.|++..
T Consensus 3 ~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~~~---------------------~~~~~~l~~~d~vi~Gs 61 (152)
T d1e5da1 3 NKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHH---------------------SQIMSEISDAGAVIVGS 61 (152)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCH---------------------HHHHHHHHTCSEEEEEC
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccCCh---------------------hhhccchhhCCEEEEec
Confidence 356666 3 23 466778888888999999988654322 22222222389999999
Q ss_pred CCC-----hhHHHHHHHHHhcCCCCCEEEecCC-C-ChhhHHHHHHHHHhcCccEecccCCCChhhhhcCCcccCCCCHH
Q 010702 81 KAG-----SPVDQTIAALSEHMSPGDCIIDGGN-E-WYLNTERRIHEASQKGLLYLGMGVSGGEEGARHGPSLMPGGSFE 153 (503)
Q Consensus 81 p~~-----~~v~~vl~~l~~~l~~g~iIId~st-~-~~~~t~~~~~~l~~~gi~~i~~pvsgg~~~a~~G~~i~~gg~~~ 153 (503)
|.. ..+...++.+...-.++..+.-.++ + .......+.+.+.+.|...+..|+.- .+ --+++
T Consensus 62 pt~~~~~~~~~~~~l~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~g~~~v~~~~~~------~~-----~p~~~ 130 (152)
T d1e5da1 62 PTHNNGILPYVAGTLQYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPATPVKV------KN-----VPTHA 130 (152)
T ss_dssp CCBTTBCCHHHHHHHHHHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCSCCEEE------ES-----SCCHH
T ss_pred cccCCccCchhHHHHHHhhccCCCCCEEEEEEeeCCCCccHHHHHHHHHHCCCEEecCcEEE------ec-----CCCHH
Confidence 863 3566777666543334554433322 2 33445667778888888776544321 00 01445
Q ss_pred HHHHHHHHHHHHh
Q 010702 154 AYNNIRDILQKVA 166 (503)
Q Consensus 154 a~~~v~~ll~~ig 166 (503)
..+.++++-+.|+
T Consensus 131 ~~~~~~e~g~~i~ 143 (152)
T d1e5da1 131 DYEQLKTMAQTIA 143 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566666655555
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=86.48 E-value=0.24 Score=43.34 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=31.7
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCC
Q 010702 4 SALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRT 38 (503)
Q Consensus 4 ~~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~ 38 (503)
++..+|-|||.|..|...|..+++.|.+|.+++++
T Consensus 3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 34568999999999999999999999999999876
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=86.43 E-value=0.12 Score=43.90 Aligned_cols=32 Identities=6% Similarity=0.130 Sum_probs=27.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHhCCCcEEEEe
Q 010702 5 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYN 36 (503)
Q Consensus 5 ~~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~d 36 (503)
|+.+|.|||.|..|..+|..|++.|++|.+..
T Consensus 2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~ 33 (183)
T d1d7ya1 2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITV 33 (183)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCCCEEEECccHHHHHHHHHHHhcCCceEEEE
Confidence 45679999999999999999999998765543
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=86.39 E-value=0.16 Score=47.98 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=27.9
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 010702 6 LSRIGLAG-LAVMGQNLALNVAEKGFPISVYNR 37 (503)
Q Consensus 6 ~~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr 37 (503)
||||-|.| .|.+|+.|+..|.++|++|.++++
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~ 34 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL 34 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence 57999997 799999999999999998766654
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=86.38 E-value=0.23 Score=41.23 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=27.8
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
.||.|||.|..|.-+|..|++ +++|+++++.+
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~ 32 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP 32 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence 379999999999999999865 78999998754
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.14 E-value=0.43 Score=39.83 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH------HHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcC
Q 010702 191 HNGIEYGDMQLISEAYDVLKHVGGLSNAELAE------IFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTG 264 (503)
Q Consensus 191 ~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~------~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~ 264 (503)
.|.....+...+.|+..+++..| -+++++.. ++-. ....+++.+. ..+. .+..++.+.+...
T Consensus 34 ~N~~aali~~g~~Em~~~~~~~g-~~~~t~~~~aGiGDLi~T--c~~sRN~~~G---~~l~------~G~~~~e~~~~~~ 101 (155)
T d1txga1 34 SNAKGVIATRAINEMAELIEILG-GDRETAFGLSGFGDLIAT--FRGGRNGMLG---ELLG------KGLSIDEAMEELE 101 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SCGGGGGSTTTHHHHHHT--TTCHHHHHHH---HHHH------TTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHhhHHHhhc-ccchhhcccchhhhHHhh--cCCCCccHHH---HHHh------hhhhHHHHHHHhc
Confidence 58888888999999999999999 67776533 2211 1111222211 1111 1234455555433
Q ss_pred ----CcchHHHHHH----HHHHcCCCcchHHHHHHHHHHhcchHHHHHHHHHh
Q 010702 265 ----MKGTGKWTVQ----QAAELSVAAPTIAASLDCRYLSGLKEEREKAAKVL 309 (503)
Q Consensus 265 ----~kgtG~~~~~----~A~~~gvp~p~~~~Av~~r~~s~~~~~r~~~~~~~ 309 (503)
+..+|..++. .+.++++.+|++.. |+ +.+...++....+..++
T Consensus 102 ~~~~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~-vy-~Il~~~~~~~~~i~~L~ 152 (155)
T d1txga1 102 RRGVGVVEGYKTAEKAYRLSSKINADTKLLDS-IY-RVLYEGLKVEEVLFELA 152 (155)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHTTCCCHHHHH-HH-HHHHSCCCHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCcHHHH-HH-HHHhCcCCHHHHHHHHH
Confidence 2456766664 67778999999985 44 55555555555555443
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.05 E-value=0.25 Score=48.52 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=30.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGF-PISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 39 (503)
+||.|||+|.+|..++.+|+..|+ +++++|.+.
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 589999999999999999999998 799998775
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=85.81 E-value=0.3 Score=43.50 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=61.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee-eCCHHHHHhccCCCcEEEEe------
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG-HYTPRDFVLSIQRPRSVIIL------ 79 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~-~~s~~e~~~~l~~~dvIil~------ 79 (503)
.+|-=||+|. ..++..|++.|++|++.|.+++-++.+.+.....+ .++.. ..+..++-- -+.-|+|+++
T Consensus 39 ~~vLDiGCG~--G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~-~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 39 DDYLDLACGT--GNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQG-LKPRLACQDISNLNI-NRKFDLITCCLDSTNY 114 (246)
T ss_dssp TEEEEETCTT--STTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTT-CCCEEECCCGGGCCC-SCCEEEEEECTTGGGG
T ss_pred CeEEEEeCcC--CHHHHHHHHhCCccEeeccchhhhhhccccccccC-ccceeeccchhhhcc-cccccccceeeeeeec
Confidence 3688889883 34677788899999999999988776554322111 12332 334444321 1235888864
Q ss_pred cCCChhHHHHHHHHHhcCCCC-CEEEecC
Q 010702 80 VKAGSPVDQTIAALSEHMSPG-DCIIDGG 107 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~l~~g-~iIId~s 107 (503)
+++......++..+...|++| .+|+|..
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 344456677889999988876 4565553
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.79 E-value=0.31 Score=42.53 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=30.4
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
-+|.|||.|.-|..-|..+++.|.+|.++++.+
T Consensus 6 yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~ 38 (233)
T d1v59a1 6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG 38 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 369999999999999999999999999999764
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=85.59 E-value=0.26 Score=43.69 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=29.0
Q ss_pred cEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 010702 8 RIGLA--GLAVMGQNLALNVAEKGFPISVYNRTTSK 41 (503)
Q Consensus 8 ~IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 41 (503)
|++|| |.+-+|.++|+.|+++|++|.+.+|+++.
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~ 37 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG 37 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence 45666 46899999999999999999999998653
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=85.42 E-value=0.33 Score=44.58 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=30.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
-+|.|||.|.-|...|..|+++|.+|.+.++.+
T Consensus 17 ~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 369999999999999999999999999999875
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.30 E-value=0.32 Score=46.52 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=28.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNR 37 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr 37 (503)
|||-|.| .|.+|+.+++.|++.||+|+++|-
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDn 33 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDN 33 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEec
Confidence 6899997 599999999999999999999984
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.28 E-value=0.36 Score=44.70 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=29.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCC
Q 010702 7 SRIGLAG-LAVMGQNLALNVAEKGFPISVYNRT 38 (503)
Q Consensus 7 ~~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~ 38 (503)
+||-|.| .|.+|+.++..|+++||+|.++|+.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~ 34 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF 34 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 5899997 6999999999999999999999863
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=85.01 E-value=0.57 Score=41.45 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=60.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCee-eeCCHHHHHhccCCCcEEEEec-----
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLT-GHYTPRDFVLSIQRPRSVIILV----- 80 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~-~~~s~~e~~~~l~~~dvIil~v----- 80 (503)
.+|-=||+|. | .++..|+++|++|++.|.+++-++.+.+.....+ .++. ...+..++--. +.-|+|+++-
T Consensus 43 ~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~-~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~ 118 (251)
T d1wzna1 43 RRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAKERN-LKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (251)
T ss_dssp CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CEEEEeCCCC-C-ccchhhcccceEEEEEeecccccccccccccccc-ccchheehhhhhcccc-cccchHhhhhhhhhc
Confidence 3688999996 4 4567788999999999999988776655432211 1222 23344433211 1247777642
Q ss_pred CCChhHHHHHHHHHhcCCCCC-EEEecCC
Q 010702 81 KAGSPVDQTIAALSEHMSPGD-CIIDGGN 108 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~-iIId~st 108 (503)
.+....+.++.++...|++|- +|+|..+
T Consensus 119 ~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 119 FDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 222345677888888887764 5666544
|
| >d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Ketopantoate reductase PanE domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=84.69 E-value=0.84 Score=36.18 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhCCCC--HHHHHHHHHHhccCCcchhHHhhhhhhccccccCCCchhHHHHHhhcCCcchHHHHHHH
Q 010702 198 DMQLISEAYDVLKHVGGLS--NAELAEIFDEWNKGELESFLVEITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTVQQ 275 (503)
Q Consensus 198 ~~~~~~Ea~~l~~~~g~~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~ld~i~~~~~~kgtG~~~~~~ 275 (503)
..+++.|+..+++..| ++ .++..+.+......... ...++..++.+.+. ..+|.+.. +.++.
T Consensus 37 ~~~l~~E~~~va~a~g-~~~~~~~~~~~~~~~~~~~~~-~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~ 100 (124)
T d1ks9a1 37 IMQICEEVAAVIEREG-HHTSAEDLRDYVMQVIDATAE-NISSMLQDIRALRH-----TEIDYING---------FLLRR 100 (124)
T ss_dssp HHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHHHTTT-CCCHHHHHHHTTCC-----CSGGGTHH---------HHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhccCC-CCChHHHHHHcCCc-----chHHHHHH---------HHHHH
Confidence 5678899999999988 65 44544444332221111 11233445544322 35666664 57999
Q ss_pred HHHcCCCcchHHHH
Q 010702 276 AAELSVAAPTIAAS 289 (503)
Q Consensus 276 A~~~gvp~p~~~~A 289 (503)
|.++|+|+|+....
T Consensus 101 a~~~gi~tP~~~~l 114 (124)
T d1ks9a1 101 ARAHGIAVPENTRL 114 (124)
T ss_dssp HHHHTCCCHHHHHH
T ss_pred HHHhCCCCcHHHHH
Confidence 99999999998754
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=84.64 E-value=0.55 Score=39.82 Aligned_cols=92 Identities=10% Similarity=-0.025 Sum_probs=59.2
Q ss_pred cEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeee--CC-HHHHHh--ccCCCcEEEEecC
Q 010702 8 RIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGH--YT-PRDFVL--SIQRPRSVIILVK 81 (503)
Q Consensus 8 ~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~--~s-~~e~~~--~l~~~dvIil~vp 81 (503)
+|-|.|. |.+|...++.....|.+|+...+++++.+.+.+.+... +... .+ .+++.+ .-...|+|+-++.
T Consensus 32 ~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~----vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG 107 (182)
T d1v3va2 32 TVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDA----AFNYKTVNSLEEALKKASPDGYDCYFDNVG 107 (182)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE----EEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred EEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhh----hcccccccHHHHHHHHhhcCCCceeEEecC
Confidence 5777787 77998888888899999999999999988877765431 1111 11 122222 1133688888874
Q ss_pred CChhHHHHHHHHHhcCCCCCEEEecCC
Q 010702 82 AGSPVDQTIAALSEHMSPGDCIIDGGN 108 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~iIId~st 108 (503)
. + .++...+.+.++-.++..+.
T Consensus 108 ~-~----~~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 108 G-E----FLNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp H-H----HHHHHGGGEEEEEEEEECCC
T ss_pred c-h----hhhhhhhhccCCCeEEeecc
Confidence 2 2 34555666666666666553
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=84.49 E-value=1.3 Score=39.27 Aligned_cols=84 Identities=13% Similarity=0.118 Sum_probs=53.4
Q ss_pred CCcEEEEcc-cHHHHHHHHHHH---hCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe--
Q 010702 6 LSRIGLAGL-AVMGQNLALNVA---EKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL-- 79 (503)
Q Consensus 6 ~~~IgIIGl-G~mG~~lA~~L~---~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~-- 79 (503)
|++|-|.|. .-+|..+|+.|+ +.|++|.+.+|++++.+++.+.. +. ..++.++.
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~------------------~~--~~~~~~~~~D 61 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLA------------------KN--HSNIHILEID 61 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHH------------------HH--CTTEEEEECC
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH------------------hc--CCcEEEEEEE
Confidence 346877775 789999999886 57999999999998766554321 11 03343333
Q ss_pred cCCChhHHHHHHHHHhc--CCCCCEEEecCCC
Q 010702 80 VKAGSPVDQTIAALSEH--MSPGDCIIDGGNE 109 (503)
Q Consensus 80 vp~~~~v~~vl~~l~~~--l~~g~iIId~st~ 109 (503)
+.+...++++++.+... ..+=+++|+....
T Consensus 62 vs~~~~v~~~~~~i~~~~~~~~iDiLvnNAg~ 93 (248)
T d1snya_ 62 LRNFDAYDKLVADIEGVTKDQGLNVLFNNAGI 93 (248)
T ss_dssp TTCGGGHHHHHHHHHHHHGGGCCSEEEECCCC
T ss_pred eccHHHHHHHHhhhHHHhhcCCcceEEeeccc
Confidence 34556677777766432 1233677776543
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=84.28 E-value=0.29 Score=41.08 Aligned_cols=33 Identities=12% Similarity=0.260 Sum_probs=29.0
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
.+|.|||.|..|.-+|..|++.|.+|++..+.+
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~ 36 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD 36 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence 589999999999999999999999987765544
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=84.07 E-value=0.38 Score=41.65 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=30.6
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
-.|.|||.|.-|...|..+++.|.+|.++++..
T Consensus 4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~ 36 (221)
T d1dxla1 4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36 (221)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 479999999999999999999999999998764
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=83.88 E-value=0.46 Score=41.70 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=30.2
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
.|.|||.|.-|.+.|..+++.|.+|.++++.+
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 68999999999999999999999999999765
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=83.87 E-value=2.7 Score=36.89 Aligned_cols=121 Identities=8% Similarity=-0.010 Sum_probs=69.9
Q ss_pred CcEEEEcccH--HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeee----eCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGLAV--MGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTG----HYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGlG~--mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~----~~s~~e~~~~l~~~dvIil~v 80 (503)
++|.=+|+|. .-..||...- .+-.|+.+|.++..++.+.+.....+ ++.. ...+..........|+|+..+
T Consensus 75 ~~VLDlGaGsG~~t~~la~~VG-~~G~V~aVD~s~~~l~~a~~~a~~~~--~~~~i~~d~~~~~~~~~~~~~vD~i~~d~ 151 (227)
T d1g8aa_ 75 KSVLYLGIASGTTASHVSDIVG-WEGKIFGIEFSPRVLRELVPIVEERR--NIVPILGDATKPEEYRALVPKVDVIFEDV 151 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHSSCT--TEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CEEEEeccCCCHHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHHhcC--CceEEEEECCCcccccccccceEEEEEEc
Confidence 4788887754 4444444332 23479999999999888776533221 1221 112222222223468888888
Q ss_pred CCChhHHHHHHHHHhcCCCCCEEEec-------CCCChhhHHHHHHHHHhcCccEec
Q 010702 81 KAGSPVDQTIAALSEHMSPGDCIIDG-------GNEWYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 81 p~~~~v~~vl~~l~~~l~~g~iIId~-------st~~~~~t~~~~~~l~~~gi~~i~ 130 (503)
+...+.+.++..+...|++|-.++-+ ++..+....+..+.+.+.|+..++
T Consensus 152 ~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie 208 (227)
T d1g8aa_ 152 AQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIE 208 (227)
T ss_dssp CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 87767788888888888887654421 233444444434444555666654
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.64 E-value=0.48 Score=40.94 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=30.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 6 LSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 6 ~~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
..+|-|||.|..|...|..+++.|.+|.++++..
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~ 36 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence 3579999999999999999999999999998764
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.49 E-value=0.44 Score=43.83 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=29.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
+|-|.| +|.+|+.++..|.++||+|.+.+|...
T Consensus 2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~ 35 (321)
T d1rpna_ 2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS 35 (321)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence 677886 699999999999999999999998653
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.49 E-value=6.8 Score=32.12 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=47.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeC-----ChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNR-----TTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr-----~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
.+|++||- .++..+++..+..-|.+|.++.. +++..+.+.+.....+ ..+..+.++.+++.. +|+|..-.
T Consensus 5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~ea~~~---adviy~~~ 80 (163)
T d1pvva2 5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESG-GSFELLHDPVKAVKD---ADVIYTDV 80 (163)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHT-CEEEEESCHHHHTTT---CSEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhccc-ceEEEecCHHHHhhh---ccEEeecc
Confidence 58999995 56778888888899999998854 3333333332211110 136778899998887 99888653
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=83.43 E-value=0.46 Score=44.88 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=27.2
Q ss_pred cEE-EEc-ccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 8 RIG-LAG-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 8 ~Ig-IIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
||. |.| +|.+|+.++..|.++||+|++.||.+.
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~ 36 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS 36 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 566 556 899999999999999999999998653
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.29 E-value=0.39 Score=37.76 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=27.6
Q ss_pred CcEEEEcccHHHHHHHHHHH---hCCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVA---EKGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~---~~G~~V~v~dr~~~ 40 (503)
.+|.|||.|.+|.-+|..|. .+|.+|+++.+.+.
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~ 57 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM 57 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence 57999999999999996555 45668999987653
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.80 E-value=0.33 Score=41.55 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=30.2
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
.+|.|||.|.-|..-|..+++.|.+|.++++.+
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~ 38 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM 38 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence 589999999999999999999999999998654
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=82.70 E-value=0.5 Score=37.03 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=28.5
Q ss_pred CcEEEEcccHHHHHHHHHHHh---CCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE---KGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~---~G~~V~v~dr~~~ 40 (503)
.+|.|||.|..|.-+|..|.+ .|.+|+++.|.+.
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~ 55 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM 55 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence 579999999999999976654 4889999988753
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.63 E-value=0.55 Score=43.45 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=27.4
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
++-|.| .|.+|+.|+..|.++||+|.++||..
T Consensus 3 ~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~ 35 (339)
T d1n7ha_ 3 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRS 35 (339)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred EEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence 444555 69999999999999999999999854
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=82.60 E-value=0.92 Score=39.04 Aligned_cols=99 Identities=10% Similarity=0.096 Sum_probs=59.3
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCe-eeeCCHHHHHhccCCCcEEEEecC----
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPL-TGHYTPRDFVLSIQRPRSVIILVK---- 81 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i-~~~~s~~e~~~~l~~~dvIil~vp---- 81 (503)
.+|-=||+|. ..++..|++.|.+|++.|.+++.++.+.+.....+ ..+ ....+..++-..-..-|+|+..--
T Consensus 39 ~~ILDiGcG~--G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~ 115 (226)
T d1ve3a1 39 GKVLDLACGV--GGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 115 (226)
T ss_dssp CEEEEETCTT--SHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CEEEEECCCc--chhhhhHhhhhcccccccccccchhhhhhhhcccc-ccccccccccccccccCcCceEEEEecchhhC
Confidence 4688899986 34667788999999999999988776654322111 111 223344332211112477766421
Q ss_pred CChhHHHHHHHHHhcCCCCC-EEEecCC
Q 010702 82 AGSPVDQTIAALSEHMSPGD-CIIDGGN 108 (503)
Q Consensus 82 ~~~~v~~vl~~l~~~l~~g~-iIId~st 108 (503)
++.....++.++...|.||- ++++..+
T Consensus 116 ~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 116 EPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 11346667888888888764 5565543
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=82.51 E-value=0.49 Score=43.80 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=30.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
..|.|||.|.-|...|..|+++|++|.+.++.+
T Consensus 24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~ 56 (322)
T d1d4ca2 24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP 56 (322)
T ss_dssp CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 479999999999999999999999999999875
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.34 E-value=0.53 Score=45.17 Aligned_cols=34 Identities=12% Similarity=0.286 Sum_probs=30.9
Q ss_pred CcEEEEcccHHHHHHHHHHHh------CCCcEEEEeCChh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE------KGFPISVYNRTTS 40 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~------~G~~V~v~dr~~~ 40 (503)
..|.|||.|.-|++.|..|++ +|++|.++++...
T Consensus 33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~ 72 (380)
T d2gmha1 33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72 (380)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence 479999999999999999997 8999999998754
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=82.11 E-value=0.5 Score=44.19 Aligned_cols=31 Identities=13% Similarity=0.372 Sum_probs=28.9
Q ss_pred CcEEEEcccHHHHHHHHHHHhCCCcEEEEeC
Q 010702 7 SRIGLAGLAVMGQNLALNVAEKGFPISVYNR 37 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr 37 (503)
-+|-|||.|.-|..+|.+|+++|++|.+.++
T Consensus 5 yDviIVGsG~aG~v~A~~La~~G~kVlvLEa 35 (379)
T d2f5va1 5 YDVVIVGSGPIGCTYARELVGAGYKVAMFDI 35 (379)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred ccEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence 3699999999999999999999999999975
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.99 E-value=2.3 Score=36.14 Aligned_cols=70 Identities=23% Similarity=0.172 Sum_probs=49.7
Q ss_pred CcEEEEc-c-cHHHHHHHHHHHhCCCcEEEEeCC-----hhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEe
Q 010702 7 SRIGLAG-L-AVMGQNLALNVAEKGFPISVYNRT-----TSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIIL 79 (503)
Q Consensus 7 ~~IgIIG-l-G~mG~~lA~~L~~~G~~V~v~dr~-----~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~ 79 (503)
.||++|| . .++..+++..++.-|.+|.+.... ++.++.+.+.....+ ..++.+.+++++++. +|+|..-
T Consensus 6 lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~eai~~---aDvVyt~ 81 (185)
T d1dxha2 6 ISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESG-AKLTLTEDPKEAVKG---VDFVHTD 81 (185)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHT-CEEEEESCHHHHTTT---CSEEEEC
T ss_pred CEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccC-CeEEEEeChhhcccc---ccEEEee
Confidence 5899999 4 589999999999999999998753 233333322111110 147788999999887 9998875
Q ss_pred c
Q 010702 80 V 80 (503)
Q Consensus 80 v 80 (503)
+
T Consensus 82 ~ 82 (185)
T d1dxha2 82 V 82 (185)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.24 E-value=0.5 Score=41.37 Aligned_cols=32 Identities=19% Similarity=0.066 Sum_probs=29.6
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
.|.|||.|.-|...|..+++.|.+|.+++..+
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~ 36 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT 36 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 68999999999999999999999999998653
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.11 E-value=0.71 Score=39.83 Aligned_cols=32 Identities=22% Similarity=0.079 Sum_probs=29.7
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTT 39 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 39 (503)
.|.|||.|..|...|..+++.|.+|.+.++..
T Consensus 5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~ 36 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELGARAAVVESHK 36 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence 68899999999999999999999999998753
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=81.01 E-value=0.67 Score=38.72 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=28.9
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeCC
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNRT 38 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr~ 38 (503)
+|.|||.|..|..-|..+++.|.+|.++++.
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence 5889999999999999999999999999864
|
| >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: ROO-like flavoprotein TM0755, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.98 E-value=3.5 Score=33.12 Aligned_cols=106 Identities=11% Similarity=0.077 Sum_probs=66.0
Q ss_pred CcEEEE-c--cc---HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhhcccCCCCeeeeCCHHHHHhccCCCcEEEEec
Q 010702 7 SRIGLA-G--LA---VMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILV 80 (503)
Q Consensus 7 ~~IgII-G--lG---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~i~~~~s~~e~~~~l~~~dvIil~v 80 (503)
.||.|| | .| .|...|+..|.+.|+.|.+++.+... ..++.+...++..+|.|++..
T Consensus 4 ~kv~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~~------------------~~~~~~~~~~l~~~d~iiigs 65 (148)
T d1vmea1 4 GKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEE------------------RPAISEILKDIPDSEALIFGV 65 (148)
T ss_dssp TEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSC------------------CCCHHHHHHHSTTCSEEEEEE
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc------------------ccchhHhhhhHHHCCEeEEEe
Confidence 466666 3 23 46777888888999999988755321 234555555666699999999
Q ss_pred CCC-----hhHHHHHHHHHhcCCCCCEEEecCC-C-ChhhHHHHHHHHHhcCccEec
Q 010702 81 KAG-----SPVDQTIAALSEHMSPGDCIIDGGN-E-WYLNTERRIHEASQKGLLYLG 130 (503)
Q Consensus 81 p~~-----~~v~~vl~~l~~~l~~g~iIId~st-~-~~~~t~~~~~~l~~~gi~~i~ 130 (503)
|.. ..+...++.+.+.-.+|..++-.+| . .....+.+.+.+...|...++
T Consensus 66 pt~~~~~~~~~~~~l~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~G~~~v~ 122 (148)
T d1vmea1 66 STYEAEIHPLMRFTLLEIIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRILS 122 (148)
T ss_dssp CEETTEECHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC-CCHHHHHHTSSCEEEE
T ss_pred cccCCccCchHHHHHHHHhhcccCCCEEEEEEcCCCccchHHHHHHHHHHcCCcEEe
Confidence 843 2566666666654335554333322 2 223345567778888877665
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=80.97 E-value=0.65 Score=38.16 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=28.2
Q ss_pred EEEE--cccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 9 IGLA--GLAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 9 IgII--GlG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
+-|+ |.|.+|..+|..|++.|.+|++..+.+.
T Consensus 42 vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 42 VVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp EEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred eEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 4444 9999999999999999999999998764
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=80.63 E-value=0.53 Score=41.70 Aligned_cols=33 Identities=9% Similarity=0.260 Sum_probs=29.6
Q ss_pred cEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChh
Q 010702 8 RIGLAG-LAVMGQNLALNVAEKGFPISVYNRTTS 40 (503)
Q Consensus 8 ~IgIIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 40 (503)
||-|.| .+-+|..+|+.|+++|++|.+.||+++
T Consensus 4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~ 37 (235)
T d1ooea_ 4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN 37 (235)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 687776 599999999999999999999999865
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.49 E-value=0.63 Score=42.94 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=62.1
Q ss_pred CcEEEEcccHHHHHHHHHHHh----CCC-------cEEEEeCCh----hH---HHHHHHhhcccCCCCeeeeCCHHHHHh
Q 010702 7 SRIGLAGLAVMGQNLALNVAE----KGF-------PISVYNRTT----SK---VDETLDRAHREGQLPLTGHYTPRDFVL 68 (503)
Q Consensus 7 ~~IgIIGlG~mG~~lA~~L~~----~G~-------~V~v~dr~~----~~---~~~l~~~~~~~g~~~i~~~~s~~e~~~ 68 (503)
.||.|.|+|.-|.++|..|.. .|. +++++|+.- ++ .+.......... .-....++.++++
T Consensus 26 ~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~--~~~~~~~L~e~i~ 103 (294)
T d1pj3a1 26 HKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSA--PESIPDTFEDAVN 103 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCC--CSSCCSSHHHHHH
T ss_pred cEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccc--cccchhHHHHHHH
Confidence 479999999999999988654 343 588888742 11 111011100000 0112357888887
Q ss_pred ccCCCcEEEEec-CCChhHHHHHHHHHhcCCCCCEEEecCCCChh
Q 010702 69 SIQRPRSVIILV-KAGSPVDQTIAALSEHMSPGDCIIDGGNEWYL 112 (503)
Q Consensus 69 ~l~~~dvIil~v-p~~~~v~~vl~~l~~~l~~g~iIId~st~~~~ 112 (503)
.++ ++++|-+. +.+...+++++.+... .+.-||.-+||-.+.
T Consensus 104 ~~k-ptvliG~S~~~g~ft~evi~~Ma~~-~~~PIIFaLSNPt~~ 146 (294)
T d1pj3a1 104 ILK-PSTIIGVAGAGRLFTPDVIRAMASI-NERPVIFALSNPTAQ 146 (294)
T ss_dssp HHC-CSEEEECCCSSCCSCHHHHHHHHHH-CSSCEEEECCSSGGG
T ss_pred hcC-CceEEEecCCCCcCCHHHHHHHHhc-CCCcEEEEccCCCCc
Confidence 543 55555544 4455567788777653 567899999997654
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=80.36 E-value=1.6 Score=31.59 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=36.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHhh
Q 010702 7 SRIGLAGL-AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRA 49 (503)
Q Consensus 7 ~~IgIIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~ 49 (503)
.+|-|.|. |-+|....+.+...|++|++..+++++.+.+.+.|
T Consensus 33 ~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG 76 (77)
T d1o8ca2 33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG 76 (77)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred CcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence 46878764 99999999988899999999999999988776643
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=80.34 E-value=0.69 Score=43.43 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=28.1
Q ss_pred cEEEEcccHHHHHHHHHHHhCCCcEEEEeC
Q 010702 8 RIGLAGLAVMGQNLALNVAEKGFPISVYNR 37 (503)
Q Consensus 8 ~IgIIGlG~mG~~lA~~L~~~G~~V~v~dr 37 (503)
.|-|||.|.-|..+|.+|+++|++|.+.++
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEa 33 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEM 33 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence 477999999999999999999999999986
|