Citrus Sinensis ID: 010732

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--
MATAVAASSFVSRSYGHEVASGLNSKASQMKFRCMKHSGLRSLNIIDDLQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEccccccccccHHHHHHcccHHHHHHccccEEEEEEccccHHHHccccEEEEEEEccEEEEEEEEEEEEcccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccEEEEcccHHHHHHHHHHHccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccEEccccHHHHHHHcccccccccccccccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccEEEEEcccccccHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHccccEEEEEEEcHHHHHHHHHcccEEEcccccccccHHHHHHcccccc
ccEEEEHHHcHcccccccccccccccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEcccccccccHHHHHcccHHHHHHcccEEEEEEccccHHHHHccccEEEEEEEcccEEEEEEEEEEEccccEEEEcccHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccHHccccccccccccccccEEEEEccHHHHHHHHHHHHHHcccccHHccEEEEEEEEHHHcccccHHHHHHccccHHHHcHHcHHccccccccccEEEHHHHHHEEccEEEEEcccHHHHHcccccccccHHHHHHHcccEEEEEccccccccccccccEEEcccHcHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHEEEcccccccccHHHHHHHHcccc
MATAVAASSFVSRSYGHEVASGLNSKASQMKFrcmkhsglrslniIDDLQVKTMASKLATsrqagrngfrsqngpslmIVCGVGLNILFVGtevapwsktgglgdvlgglppalaanghrvmtiaprydqykdawdTDVVIELKVGDKIEKVRFFHchkrgvdrvfvdhPWFLAKVWGktqskiygprtgedyqdnQLRFSLLCQAAleaprilnlnsnkyfsgpygedvVFVANDwhtslipcylktmykpkgmyksaKVVFCIHNIAyqgrfafedfgllnlpaqfkssfdfidgynkpvrgrkinwmkagilesdmvltvsphyaqelvsgedkgveLDNIIRKTGIKGivngmdvqewnpltdkyigvkydastvmdaKPLLKEALQAevglpvdrnipvigfigrleeqkgsDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGadfilipsrfepcgliQLHAMRYGTV
matavaassfvsrsyghevasglnskaSQMKFRCMKHSGLRSLNIIDDLQVKTMASKLAtsrqagrngfrsqngpSLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHChkrgvdrvfvdhPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQElvsgedkgvelDNIIRKTgikgivngmdvqewNPLTDKYIGVKYDASTVMDAKPLLKEALqaevglpvdrnIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV
MATAVAASSFVSRSYGHEVASGLNSKASQMKFRCMKHSGLRSLNIIDDLQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTgglgdvlgglppalaangHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV
*******************************FRCMKHSGLRSLNIIDDLQVK***********************SLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRY***
***********************************************************************************GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV
*********FVSRSYGHEVASGLNSKASQMKFRCMKHSGLRSLNIIDDLQVKTMAS**********NGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV
********SFVS************************HSGLRSLNIIDDLQVKTMASKLATSR***************MIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MATAVAASSFVSRSYGHEVASGLNSKASQMKFRCMKHSGLRSLNIIDDLQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query502 2.2.26 [Sep-21-2011]
Q43784 608 Granule-bound starch synt N/A no 0.984 0.812 0.729 0.0
O82627 608 Granule-bound starch synt N/A no 0.988 0.815 0.720 0.0
Q00775 607 Granule-bound starch synt N/A no 0.988 0.817 0.722 0.0
Q42857 608 Granule-bound starch synt N/A no 0.984 0.812 0.714 0.0
Q9MAQ0 610 Probable granule-bound st yes no 0.992 0.816 0.693 0.0
Q43092 603 Granule-bound starch synt N/A no 0.898 0.747 0.739 0.0
Q8LL05 565 Granule-bound starch synt N/A no 0.886 0.787 0.708 0.0
P04713 605 Granule-bound starch synt N/A no 0.916 0.760 0.681 0.0
Q42968 609 Granule-bound starch synt N/A no 0.906 0.747 0.688 0.0
Q0DEV5 609 Granule-bound starch synt no no 0.906 0.747 0.688 0.0
>sp|Q43784|SSG1_MANES Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1 Back     alignment and function desciption
 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/507 (72%), Positives = 424/507 (83%), Gaps = 13/507 (2%)

Query: 1   MATAVAASSFVSRSYGHEVASGLNSKASQMKF-----RCMKHSGLRSLNIIDDLQVKTMA 55
           MAT +AA  FVSRS  H     L +KA+ +       + +  +GLRSLN +D LQ+KT  
Sbjct: 1   MATVIAAH-FVSRS-SHLSIHALETKANNLSHTGPWTQTITPNGLRSLNTMDKLQMKTQ- 57

Query: 56  SKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALA 115
           SK      A  NG      P+  I+CG G+N++FVG EV PWSKTGGLGDVLGGLPPA+A
Sbjct: 58  SKAVKKVSATGNG-----RPAAKIICGHGMNLIFVGAEVGPWSKTGGLGDVLGGLPPAMA 112

Query: 116 ANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAK 175
           A GHRVMT++PRYDQYKDAWDT V +E+K+GD+IE VRFFH +KRGVDRVFVDHP FL K
Sbjct: 113 ARGHRVMTVSPRYDQYKDAWDTSVSVEIKIGDRIETVRFFHSYKRGVDRVFVDHPMFLEK 172

Query: 176 VWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVAN 235
           VWGKT SKIYGPR G DYQDNQLRFSLLC AALEAPR+LNLNS+K FSGPYGE+V F+AN
Sbjct: 173 VWGKTGSKIYGPRAGLDYQDNQLRFSLLCLAALEAPRVLNLNSSKNFSGPYGEEVAFIAN 232

Query: 236 DWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI 295
           DWHT+L+PCYLK +Y+P G+YK AKV FCIHNIAYQGRFAF DF  LNLP +FKSSFDFI
Sbjct: 233 DWHTALLPCYLKAIYQPMGIYKHAKVAFCIHNIAYQGRFAFSDFPRLNLPDKFKSSFDFI 292

Query: 296 DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVN 355
           DGY KPV+GRKINWMKAGILESD VLTVSP+YAQE++SG ++GVELDN IRKTGI GI+N
Sbjct: 293 DGYEKPVKGRKINWMKAGILESDRVLTVSPYYAQEVISGVERGVELDNFIRKTGIAGIIN 352

Query: 356 GMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQK 415
           GMDVQEWNP+TDKYI + YDA+TVMDAKPLLKEALQAEVGLPVDRN+P+IGFIGRLEEQK
Sbjct: 353 GMDVQEWNPVTDKYIDIHYDATTVMDAKPLLKEALQAEVGLPVDRNVPLIGFIGRLEEQK 412

Query: 416 GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA 475
           GSDI  AAI   ++ NVQI++LGTGKK  EKQ+E LE+LYP+KARGVAKFN+PLAHMI A
Sbjct: 413 GSDIFVAAISQLVEHNVQIVILGTGKKKFEKQIEHLEVLYPDKARGVAKFNVPLAHMITA 472

Query: 476 GADFILIPSRFEPCGLIQLHAMRYGTV 502
           GADF+L+PSRFEPCGLIQLHAMRYGTV
Sbjct: 473 GADFMLVPSRFEPCGLIQLHAMRYGTV 499
Responsible for the synthesis of amylose in reserve starch.
Manihot esculenta (taxid: 3983)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 4EC: 2
>sp|O82627|SSG1_ANTMA Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1 Back     alignment and function description
>sp|Q00775|SSG1_SOLTU Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1 Back     alignment and function description
>sp|Q42857|SSG1_IPOBA Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2 Back     alignment and function description
>sp|Q9MAQ0|SSG1_ARATH Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1 Back     alignment and function description
>sp|Q43092|SSG1_PEA Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|Q8LL05|SSG1B_HORVU Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1 Back     alignment and function description
>sp|P04713|SSG1_MAIZE Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1 Back     alignment and function description
>sp|Q42968|SSG1_ORYGL Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1 Back     alignment and function description
>sp|Q0DEV5|SSG1_ORYSJ Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query502
375151860 611 GBSSII-2 [Citrus sinensis] 1.0 0.821 0.998 0.0
375151864 618 GBSSII-2 [Prunus persica] 0.936 0.760 0.800 0.0
182636946 615 granule bound starch synthase Ib precurs 0.968 0.790 0.780 0.0
223029784 615 granule-bound starch synthase [Nelumbo n 0.994 0.811 0.758 0.0
197725528 615 granule-bound starch synthase [Nelumbo n 0.996 0.813 0.759 0.0
225466653 614 PREDICTED: granule-bound starch synthase 0.992 0.811 0.744 0.0
375151858 611 GBSSII-1 [Citrus sinensis] 0.994 0.816 0.746 0.0
170676395 614 granule bound starch synthase Ib precurs 0.960 0.785 0.767 0.0
258489621 609 granule-bound starch synthase 1 [Gossypi 0.988 0.814 0.737 0.0
211906516 609 granule bound starch synthase [Gossypium 0.988 0.814 0.737 0.0
>gi|375151860|gb|AFA36446.1| GBSSII-2 [Citrus sinensis] Back     alignment and taxonomy information
 Score = 1044 bits (2699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/502 (99%), Positives = 502/502 (100%)

Query: 1   MATAVAASSFVSRSYGHEVASGLNSKASQMKFRCMKHSGLRSLNIIDDLQVKTMASKLAT 60
           MATAVAASSFVSRSYGHEVASGLNSKASQMKFRCMKHSGLRSLNIID+LQVKTMASKLAT
Sbjct: 1   MATAVAASSFVSRSYGHEVASGLNSKASQMKFRCMKHSGLRSLNIIDELQVKTMASKLAT 60

Query: 61  SRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHR 120
           SRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHR
Sbjct: 61  SRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHR 120

Query: 121 VMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKT 180
           VMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKT
Sbjct: 121 VMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKT 180

Query: 181 QSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS 240
           QSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS
Sbjct: 181 QSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS 240

Query: 241 LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNK 300
           LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNK
Sbjct: 241 LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNK 300

Query: 301 PVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQ 360
           PVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQ
Sbjct: 301 PVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQ 360

Query: 361 EWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDIL 420
           EWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDIL
Sbjct: 361 EWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDIL 420

Query: 421 AAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480
           AAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI
Sbjct: 421 AAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480

Query: 481 LIPSRFEPCGLIQLHAMRYGTV 502
           LIPSRFEPCGLIQLHAMRYGTV
Sbjct: 481 LIPSRFEPCGLIQLHAMRYGTV 502

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|375151864|gb|AFA36448.1| GBSSII-2 [Prunus persica] Back     alignment and taxonomy information
>gi|182636946|gb|ACB97678.1| granule bound starch synthase Ib precursor [Malus x domestica] gi|357528262|gb|AET80370.1| granule-bound starch synthase GBSS2 [Malus x domestica] Back     alignment and taxonomy information
>gi|223029784|gb|ACM78591.1| granule-bound starch synthase [Nelumbo nucifera] Back     alignment and taxonomy information
>gi|197725528|gb|ACH72975.1| granule-bound starch synthase [Nelumbo nucifera] Back     alignment and taxonomy information
>gi|225466653|ref|XP_002273608.1| PREDICTED: granule-bound starch synthase 1, chloroplastic/amyloplastic [Vitis vinifera] gi|296089007|emb|CBI38710.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|375151858|gb|AFA36445.1| GBSSII-1 [Citrus sinensis] Back     alignment and taxonomy information
>gi|170676395|gb|ACB30385.1| granule bound starch synthase Ib precursor [Lotus japonicus] Back     alignment and taxonomy information
>gi|258489621|gb|ACV72639.1| granule-bound starch synthase 1 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|211906516|gb|ACJ11751.1| granule bound starch synthase [Gossypium hirsutum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query502
TAIR|locus:2037950 610 GBSS1 "granule bound starch sy 0.992 0.816 0.667 5.4e-182
UNIPROTKB|Q42968 609 WAXY "Granule-bound starch syn 0.898 0.740 0.654 2.2e-162
TAIR|locus:2102102792 SS2 "starch synthase 2" [Arabi 0.796 0.505 0.419 7.9e-78
TAIR|locus:2169749652 SS1 "starch synthase 1" [Arabi 0.802 0.618 0.395 1.4e-73
TIGR_CMR|BA_5120476 BA_5120 "glycogen synthase" [B 0.523 0.552 0.392 3.7e-50
UNIPROTKB|Q9KRB6484 glgA "Glycogen synthase" [Vibr 0.579 0.601 0.345 1e-43
TIGR_CMR|VC_1726484 VC_1726 "glycogen synthase" [V 0.579 0.601 0.345 1e-43
TIGR_CMR|GSU_1023501 GSU_1023 "glycogen synthase" [ 0.523 0.524 0.372 1.9e-42
TIGR_CMR|GSU_3257484 GSU_3257 "glycogen synthase" [ 0.519 0.539 0.379 4e-42
TAIR|locus:21419361040 SS4 "starch synthase 4" [Arabi 0.782 0.377 0.313 8.5e-40
TAIR|locus:2037950 GBSS1 "granule bound starch synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1766 (626.7 bits), Expect = 5.4e-182, P = 5.4e-182
 Identities = 337/505 (66%), Positives = 402/505 (79%)

Query:     1 MATAVAASSFVSRS--YGHEVASGLNSKAS-QMKFRCMKHSGLRSLNIIDDLQVKTMASK 57
             MAT  A+S+FVSR+  + +  AS  +  A   +K + + H GLRS N++D+LQ ++ A K
Sbjct:     1 MATVTASSNFVSRTSLFNNHGASSCSDVAQITLKGQSLTHCGLRSFNMVDNLQRRSQA-K 59

Query:    58 LATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXX 117
               +++ + R+      G    IVC  G++++F+G EV PWSKT                 
Sbjct:    60 PVSAKSSKRSSKVKTAGK---IVCEKGMSVIFIGAEVGPWSKTGGLGDVLGGLPPALAAR 116

Query:   118 XHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVW 177
              HRVMTI PRYDQYKDAWDT VV+++KVGDK+E VRFFHC+KRGVDRVFVDHP FLAKV 
Sbjct:   117 GHRVMTICPRYDQYKDAWDTCVVVQIKVGDKVENVRFFHCYKRGVDRVFVDHPIFLAKVV 176

Query:   178 GKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDW 237
             GKT SKIYGP TG DY DNQLRFSLLCQAALEAP++LNLNS+KYFSGPYGEDVVFVANDW
Sbjct:   177 GKTGSKIYGPITGVDYNDNQLRFSLLCQAALEAPQVLNLNSSKYFSGPYGEDVVFVANDW 236

Query:   238 HTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDG 297
             HT+L+PCYLK+MY+ +G+Y +AKVVFCIHNIAYQGRFAF+D+ LLNLP  FKSSFDF+DG
Sbjct:   237 HTALLPCYLKSMYQSRGVYMNAKVVFCIHNIAYQGRFAFDDYSLLNLPISFKSSFDFMDG 296

Query:   298 YNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM 357
             Y KPV+GRKINWMKA ILE+  VLTVSP+YAQEL+SG D+GVEL   +R   + GI+NGM
Sbjct:   297 YEKPVKGRKINWMKAAILEAHRVLTVSPYYAQELISGVDRGVELHKYLRMKTVSGIINGM 356

Query:   358 DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGS 417
             DVQEWNP TDKYI +KYD +TV DAKPL+KEALQA VGLPVDR++PVIGFIGRLEEQKGS
Sbjct:   357 DVQEWNPSTDKYIDIKYDITTVTDAKPLIKEALQAAVGLPVDRDVPVIGFIGRLEEQKGS 416

Query:   418 DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477
             DIL  AI  F+  NVQ+++LGTGKK ME Q+ +LE  +P KA GVAKFN+PLAHMI AGA
Sbjct:   417 DILVEAISKFMGLNVQMVILGTGKKKMEAQILELEEKFPGKAVGVAKFNVPLAHMITAGA 476

Query:   478 DFILIPSRFEPCGLIQLHAMRYGTV 502
             DFI++PSRFEPCGLIQLHAMRYGTV
Sbjct:   477 DFIIVPSRFEPCGLIQLHAMRYGTV 501
GO:0009011 "starch synthase activity" evidence=IEA
GO:0009058 "biosynthetic process" evidence=IEA
GO:0009250 "glucan biosynthetic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0001666 "response to hypoxia" evidence=RCA
GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA
GO:0019375 "galactolipid biosynthetic process" evidence=RCA
UNIPROTKB|Q42968 WAXY "Granule-bound starch synthase 1, chloroplastic/amyloplastic" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
TAIR|locus:2102102 SS2 "starch synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169749 SS1 "starch synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5120 BA_5120 "glycogen synthase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KRB6 glgA "Glycogen synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1726 VC_1726 "glycogen synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1023 GSU_1023 "glycogen synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3257 GSU_3257 "glycogen synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TAIR|locus:2141936 SS4 "starch synthase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LL05SSG1B_HORVU2, ., 4, ., 1, ., 2, 4, 20.70880.88640.7876N/Ano
Q42857SSG1_IPOBA2, ., 4, ., 1, ., 2, 4, 20.71480.98400.8125N/Ano
Q43784SSG1_MANES2, ., 4, ., 1, ., 2, 4, 20.72970.98400.8125N/Ano
O82627SSG1_ANTMA2, ., 4, ., 1, ., 2, 10.72070.98800.8157N/Ano
Q43092SSG1_PEA2, ., 4, ., 1, ., 2, 4, 20.73920.89840.7479N/Ano
Q00775SSG1_SOLTU2, ., 4, ., 1, ., 2, 4, 20.72220.98800.8171N/Ano
Q9MAQ0SSG1_ARATH2, ., 4, ., 1, ., 2, 4, 20.69300.99200.8163yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00011972001
SubName- Full=Chromosome undetermined scaffold_2674, whole genome shotgun sequence; (614 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00028257001
RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role [...] (445 aa)
• •  •• 0.527
GSVIVG00029046001
RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role [...] (509 aa)
• •  •• 0.499
GSVIVG00007848001
SubName- Full=Chromosome undetermined scaffold_1099, whole genome shotgun sequence; (319 aa)
  •     0.489
GSVIVG00014579001
RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role [...] (519 aa)
• •  •• 0.469
GSVIVG00019926001
RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role [...] (520 aa)
• •  •• 0.449
GSVIVG00036349001
RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role [...] (527 aa)
• •   • 0.424
GSVIVG00015571001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (755 aa)
•     • 0.422
GSVIVG00025477001
RecName- Full=Galactose-1-phosphate uridylyltransferase; EC=2.7.7.12; (332 aa)
•       0.408

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query502
cd03791476 cd03791, GT1_Glycogen_synthase_DULL1_like, This fa 1e-167
TIGR02095473 TIGR02095, glgA, glycogen/starch synthase, ADP-glu 1e-164
PRK00654466 PRK00654, glgA, glycogen synthase; Provisional 1e-129
COG0297487 COG0297, GlgA, Glycogen synthase [Carbohydrate tra 1e-107
pfam08323234 pfam08323, Glyco_transf_5, Starch synthase catalyt 1e-82
PRK14099485 PRK14099, PRK14099, glycogen synthase; Provisional 3e-79
PRK14098489 PRK14098, PRK14098, glycogen synthase; Provisional 7e-61
PLN02939977 PLN02939, PLN02939, transferase, transferring glyc 3e-54
PLN023161036 PLN02316, PLN02316, synthase/transferase 5e-48
cd03801374 cd03801, GT1_YqgM_like, This family is most closel 3e-17
cd03798377 cd03798, GT1_wlbH_like, This family is most closel 2e-08
TIGR02149388 TIGR02149, glgA_Coryne, glycogen synthase, Coryneb 5e-07
COG0438381 COG0438, RfaG, Glycosyltransferase [Cell envelope 5e-07
cd03811353 cd03811, GT1_WabH_like, This family is most closel 7e-07
pfam00534158 pfam00534, Glycos_transf_1, Glycosyl transferases 1e-06
cd01635229 cd01635, Glycosyltransferase_GTB_type, Glycosyltra 2e-06
cd03795357 cd03795, GT1_like_4, This family is most closely r 2e-04
cd03814364 cd03814, GT1_like_2, This family is most closely r 3e-04
TIGR03449405 TIGR03449, mycothiol_MshA, D-inositol-3-phosphate 5e-04
cd03800398 cd03800, GT1_Sucrose_synthase, This family is most 5e-04
cd03823359 cd03823, GT1_ExpE7_like, This family is most close 7e-04
cd03796 398 cd03796, GT1_PIG-A_like, This family is most close 0.001
cd03817374 cd03817, GT1_UGDG_like, This family is most closel 0.001
TIGR04063397 TIGR04063, stp3, PEP-CTERM/exosortase A-associated 0.004
cd03820348 cd03820, GT1_amsD_like, This family is most closel 0.004
pfam14172133 pfam14172, DUF4309, Domain of unknown function (DU 0.004
>gnl|CDD|99965 cd03791, GT1_Glycogen_synthase_DULL1_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information 
 Score =  480 bits (1239), Expect = e-167
 Identities = 171/423 (40%), Positives = 240/423 (56%), Gaps = 33/423 (7%)

Query: 86  NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDT----DVVI 141
            +LFV +EVAP++KTGGLGDV+G LP ALA  GH V  I P+Y +  D          + 
Sbjct: 1   KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLF 60

Query: 142 ELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFS 201
            + VG + E V  F     GV   F+D+P +  +             +G DY+DN  RF+
Sbjct: 61  GVPVGGRPEYVGVFELPVDGVPVYFLDNPDYFDRPGLY-------DDSGYDYEDNAERFA 113

Query: 202 LLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKV 261
           L  +AALE  R L             +  +   +DWHT L+P  LK  Y     +K+ K 
Sbjct: 114 LFSRAALELLRRLG-----------WKPDIIHCHDWHTGLVPALLKEKYADPF-FKNIKT 161

Query: 262 VFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVL 321
           VF IHN+AYQG F  E    L LP +     D ++ Y +      +N++KAGI+ +D V 
Sbjct: 162 VFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQ------VNFLKAGIVYADAVT 215

Query: 322 TVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTV 379
           TVSP YA+E+++ E  G  LD ++  R   + GI+NG+D   WNP TD ++   Y A   
Sbjct: 216 TVSPTYAREILTPEF-GEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSA-DD 273

Query: 380 MDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT 439
           ++ K   K ALQ E+GLPVD + P+ GF+GRL EQKG D+L  A+P  ++   Q+++LG+
Sbjct: 274 LEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGS 333

Query: 440 GKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRY 499
           G    E+ L +L   YP +   +  ++  LAH+I AGADF L+PSRFEPCGL Q++AMRY
Sbjct: 334 GDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRY 393

Query: 500 GTV 502
           GTV
Sbjct: 394 GTV 396

Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. Length = 476
>gnl|CDD|233724 TIGR02095, glgA, glycogen/starch synthase, ADP-glucose type Back     alignment and domain information
>gnl|CDD|234809 PRK00654, glgA, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|223374 COG0297, GlgA, Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|219794 pfam08323, Glyco_transf_5, Starch synthase catalytic domain Back     alignment and domain information
>gnl|CDD|237610 PRK14099, PRK14099, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|172588 PRK14098, PRK14098, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups Back     alignment and domain information
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase Back     alignment and domain information
>gnl|CDD|99974 cd03801, GT1_YqgM_like, This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>gnl|CDD|99971 cd03798, GT1_wlbH_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|233748 TIGR02149, glgA_Coryne, glycogen synthase, Corynebacterium family Back     alignment and domain information
>gnl|CDD|223515 COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|99982 cd03811, GT1_WabH_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|215979 pfam00534, Glycos_transf_1, Glycosyl transferases group 1 Back     alignment and domain information
>gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>gnl|CDD|99969 cd03795, GT1_like_4, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|99985 cd03814, GT1_like_2, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|132490 TIGR03449, mycothiol_MshA, D-inositol-3-phosphate glycosyltransferase Back     alignment and domain information
>gnl|CDD|99973 cd03800, GT1_Sucrose_synthase, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|99993 cd03823, GT1_ExpE7_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|99970 cd03796, GT1_PIG-A_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|99987 cd03817, GT1_UGDG_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|234452 TIGR04063, stp3, PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family Back     alignment and domain information
>gnl|CDD|99990 cd03820, GT1_amsD_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|222577 pfam14172, DUF4309, Domain of unknown function (DUF4309) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 502
PLN02939977 transferase, transferring glycosyl groups 100.0
PRK14098489 glycogen synthase; Provisional 100.0
PRK14099485 glycogen synthase; Provisional 100.0
TIGR02095473 glgA glycogen/starch synthases, ADP-glucose type. 100.0
PLN023161036 synthase/transferase 100.0
PRK00654466 glgA glycogen synthase; Provisional 100.0
COG0297487 GlgA Glycogen synthase [Carbohydrate transport and 100.0
cd03791476 GT1_Glycogen_synthase_DULL1_like This family is mo 100.0
TIGR02094601 more_P_ylases alpha-glucan phosphorylases. This fa 100.0
PF08323245 Glyco_transf_5: Starch synthase catalytic domain; 100.0
cd04299 778 GT1_Glycogen_Phosphorylase_like This family is mos 100.0
cd03796 398 GT1_PIG-A_like This family is most closely related 100.0
PRK10307412 putative glycosyl transferase; Provisional 99.97
TIGR03449405 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino 99.97
TIGR02468 1050 sucrsPsyn_pln sucrose phosphate synthase/possible 99.97
TIGR02472439 sucr_P_syn_N sucrose-phosphate synthase, putative, 99.97
TIGR02149388 glgA_Coryne glycogen synthase, Corynebacterium fam 99.97
PLN02871 465 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase 99.97
TIGR02470 784 sucr_synth sucrose synthase. This model represents 99.96
KOG1111 426 consensus N-acetylglucosaminyltransferase complex, 99.96
cd04962371 GT1_like_5 This family is most closely related to 99.96
PLN02846 462 digalactosyldiacylglycerol synthase 99.96
cd03818396 GT1_ExpC_like This family is most closely related 99.96
cd03802335 GT1_AviGT4_like This family is most closely relate 99.96
PRK15484380 lipopolysaccharide 1,2-N-acetylglucosaminetransfer 99.96
cd03805392 GT1_ALG2_like This family is most closely related 99.96
cd03812358 GT1_CapH_like This family is most closely related 99.95
PRK10125405 putative glycosyl transferase; Provisional 99.95
PRK15427406 colanic acid biosynthesis glycosyltransferase WcaL 99.95
PLN00142 815 sucrose synthase 99.95
cd03800398 GT1_Sucrose_synthase This family is most closely r 99.95
cd04955363 GT1_like_6 This family is most closely related to 99.95
cd03819355 GT1_WavL_like This family is most closely related 99.95
PRK09922359 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D 99.95
cd03792372 GT1_Trehalose_phosphorylase Trehalose phosphorylas 99.94
cd03793 590 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, 99.94
cd03821375 GT1_Bme6_like This family is most closely related 99.94
cd04951360 GT1_WbdM_like This family is most closely related 99.94
TIGR03088374 stp2 sugar transferase, PEP-CTERM/EpsH1 system ass 99.94
cd03817374 GT1_UGDG_like This family is most closely related 99.94
cd03795357 GT1_like_4 This family is most closely related to 99.94
cd03823359 GT1_ExpE7_like This family is most closely related 99.94
cd03806419 GT1_ALG11_like This family is most closely related 99.94
cd03799355 GT1_amsK_like This is a family of GT1 glycosyltran 99.93
cd03807365 GT1_WbnK_like This family is most closely related 99.93
cd05844367 GT1_like_7 Glycosyltransferases catalyze the trans 99.93
cd03814364 GT1_like_2 This family is most closely related to 99.93
cd03794394 GT1_wbuB_like This family is most closely related 99.93
cd03816415 GT1_ALG1_like This family is most closely related 99.93
cd03825365 GT1_wcfI_like This family is most closely related 99.93
PRK15179694 Vi polysaccharide biosynthesis protein TviE; Provi 99.93
cd03809365 GT1_mtfB_like This family is most closely related 99.92
cd03801374 GT1_YqgM_like This family is most closely related 99.92
PLN02949463 transferase, transferring glycosyl groups 99.92
cd03820348 GT1_amsD_like This family is most closely related 99.92
cd03811353 GT1_WabH_like This family is most closely related 99.91
cd03822366 GT1_ecORF704_like This family is most closely rela 99.91
cd03808359 GT1_cap1E_like This family is most closely related 99.91
cd03798377 GT1_wlbH_like This family is most closely related 99.91
PRK15490578 Vi polysaccharide biosynthesis protein TviE; Provi 99.91
PLN02501 794 digalactosyldiacylglycerol synthase 99.9
PLN02275371 transferase, transferring glycosyl groups 99.9
cd03813475 GT1_like_3 This family is most closely related to 99.89
cd03804351 GT1_wbaZ_like This family is most closely related 99.88
TIGR03087397 stp1 sugar transferase, PEP-CTERM/EpsH1 system ass 99.88
PHA01633335 putative glycosyl transferase group 1 99.87
cd03788460 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a 99.83
TIGR02400456 trehalose_OtsA alpha,alpha-trehalose-phosphate syn 99.83
PRK00726357 murG undecaprenyldiphospho-muramoylpentapeptide be 99.83
TIGR02918500 accessory Sec system glycosylation protein GtfA. M 99.82
cd03785350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 99.81
cd04946407 GT1_AmsK_like This family is most closely related 99.81
TIGR01133348 murG undecaprenyldiphospho-muramoylpentapeptide be 99.8
PHA01630331 putative group 1 glycosyl transferase 99.79
cd04949372 GT1_gtfA_like This family is most closely related 99.77
PRK13609380 diacylglycerol glucosyltransferase; Provisional 99.76
cd01635229 Glycosyltransferase_GTB_type Glycosyltransferases 99.75
PLN03063 797 alpha,alpha-trehalose-phosphate synthase (UDP-form 99.74
PF05693 633 Glycogen_syn: Glycogen synthase; InterPro: IPR0086 99.74
PLN02605382 monogalactosyldiacylglycerol synthase 99.73
PRK14501 726 putative bifunctional trehalose-6-phosphate syntha 99.7
TIGR02398487 gluc_glyc_Psyn glucosylglycerol-phosphate synthase 99.68
PRK05749425 3-deoxy-D-manno-octulosonic-acid transferase; Revi 99.66
cd04950373 GT1_like_1 Glycosyltransferases catalyze the trans 99.63
PRK13608391 diacylglycerol glucosyltransferase; Provisional 99.61
PF00534172 Glycos_transf_1: Glycosyl transferases group 1; In 99.53
cd03786363 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th 99.5
PRK00025380 lpxB lipid-A-disaccharide synthase; Reviewed 99.49
PF13439177 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 99.46
TIGR00236365 wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras 99.46
PLN03064 934 alpha,alpha-trehalose-phosphate synthase (UDP-form 99.44
PF13579160 Glyco_trans_4_4: Glycosyl transferase 4-like domai 99.43
TIGR00215385 lpxB lipid-A-disaccharide synthase. Lipid-A precur 99.36
PRK09814333 beta-1,6-galactofuranosyltransferase; Provisional 99.3
KOG0853 495 consensus Glycosyltransferase [Cell wall/membrane/ 99.26
COG0438381 RfaG Glycosyltransferase [Cell envelope biogenesis 99.13
KOG1387465 consensus Glycosyltransferase [Cell wall/membrane/ 99.1
PF13692135 Glyco_trans_1_4: Glycosyl transferases group 1; PD 99.06
PRK10117474 trehalose-6-phosphate synthase; Provisional 99.0
PF00982474 Glyco_transf_20: Glycosyltransferase family 20; In 98.99
COG0058 750 GlgP Glucan phosphorylase [Carbohydrate transport 98.88
PRK12446352 undecaprenyldiphospho-muramoylpentapeptide beta-N- 98.86
PLN02205 854 alpha,alpha-trehalose-phosphate synthase [UDP-form 98.86
PF09314185 DUF1972: Domain of unknown function (DUF1972); Int 98.85
COG0380486 OtsA Trehalose-6-phosphate synthase [Carbohydrate 98.8
PRK14986 815 glycogen phosphorylase; Provisional 98.69
KOG2941444 consensus Beta-1,4-mannosyltransferase [Posttransl 98.69
PF13477139 Glyco_trans_4_2: Glycosyl transferase 4-like 98.62
cd04300 797 GT1_Glycogen_Phosphorylase This is a family of oli 98.6
KOG3742 692 consensus Glycogen synthase [Carbohydrate transpor 98.53
COG0707357 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami 98.5
TIGR03590279 PseG pseudaminic acid biosynthesis-associated prot 98.48
PRK14985 798 maltodextrin phosphorylase; Provisional 98.43
TIGR03713519 acc_sec_asp1 accessory Sec system protein Asp1. Th 98.42
TIGR02093 794 P_ylase glycogen/starch/alpha-glucan phosphorylase 98.42
PF00343 713 Phosphorylase: Carbohydrate phosphorylase; InterPr 98.34
PF13528318 Glyco_trans_1_3: Glycosyl transferase family 1 98.26
TIGR02919438 accessory Sec system glycosyltransferase GtfB. Mem 98.1
PF12000171 Glyco_trans_4_3: Gkycosyl transferase family 4 gro 98.05
PF04007335 DUF354: Protein of unknown function (DUF354); Inte 97.93
TIGR03568365 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, 97.7
COG0763381 LpxB Lipid A disaccharide synthetase [Cell envelop 97.69
cd03784401 GT1_Gtf_like This family includes the Gtfs, a grou 97.63
PRK01021608 lpxB lipid-A-disaccharide synthase; Reviewed 97.53
TIGR00661321 MJ1255 conserved hypothetical protein. This model 97.45
PF02684373 LpxB: Lipid-A-disaccharide synthetase; InterPro: I 97.43
PF02350346 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; 97.21
TIGR03492396 conserved hypothetical protein. This protein famil 97.19
COG3660329 Predicted nucleoside-diphosphate-sugar epimerase [ 96.68
PHA03392 507 egt ecdysteroid UDP-glucosyltransferase; Provision 96.56
COG1817346 Uncharacterized protein conserved in archaea [Func 96.49
COG1519419 KdtA 3-deoxy-D-manno-octulosonic-acid transferase 96.28
PF00862550 Sucrose_synth: Sucrose synthase; InterPro: IPR0003 96.19
PF13844468 Glyco_transf_41: Glycosyl transferase family 41; P 95.53
PF11997268 DUF3492: Domain of unknown function (DUF3492); Int 94.74
PRK14089347 ipid-A-disaccharide synthase; Provisional 94.65
COG1819406 Glycosyl transferases, related to UDP-glucuronosyl 94.21
COG3914620 Spy Predicted O-linked N-acetylglucosamine transfe 93.59
PF06258311 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP 93.57
PRK10017426 colanic acid biosynthesis protein; Provisional 93.5
COG0381383 WecB UDP-N-acetylglucosamine 2-epimerase [Cell env 92.04
PF12038168 DUF3524: Domain of unknown function (DUF3524); Int 91.98
PF06925169 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) sy 91.74
PF0828890 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IP 90.97
KOG1050 732 consensus Trehalose-6-phosphate synthase component 90.36
PRK02797322 4-alpha-L-fucosyltransferase; Provisional 88.86
COG4671400 Predicted glycosyl transferase [General function p 87.97
TIGR02195334 heptsyl_trn_II lipopolysaccharide heptosyltransfer 87.94
COG3980318 spsG Spore coat polysaccharide biosynthesis protei 87.59
TIGR01426392 MGT glycosyltransferase, MGT family. This model de 87.4
PF01975196 SurE: Survival protein SurE; InterPro: IPR002828 T 85.78
PF1008797 DUF2325: Uncharacterized protein conserved in bact 84.51
cd03789279 GT1_LPS_heptosyltransferase Lipopolysaccharide hep 83.92
PF02951119 GSH-S_N: Prokaryotic glutathione synthetase, N-ter 83.48
PRK10422352 lipopolysaccharide core biosynthesis protein; Prov 82.47
PF07429360 Glyco_transf_56: 4-alpha-L-fucosyltransferase glyc 82.02
PF04464369 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate 82.0
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information 
Probab=100.00  E-value=2.5e-61  Score=530.45  Aligned_cols=390  Identities=34%  Similarity=0.580  Sum_probs=326.6

Q ss_pred             cCCceEEEEeeeccCccccccHHHHHhhhHHHHHHCCCeEEEEEecCCCCccccCCc-----eEEEEEeCCeeeEEEEEE
Q 010732           82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTD-----VVIELKVGDKIEKVRFFH  156 (502)
Q Consensus        82 ~~~MkIl~V~~~~~P~~~~GG~~~~v~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  156 (502)
                      +++|||+||++|+.|+.++||+++++++|+++|++.||+|.|++|.|+.....+...     ......++......++++
T Consensus       479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~  558 (977)
T PLN02939        479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT  558 (977)
T ss_pred             CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence            568999999999999999999999999999999999999999999998765322111     112222333333467788


Q ss_pred             EeecCceEEEEeC--C-cccccccCCCCCcccCCCCCCCCcchHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCEEEE
Q 010732          157 CHKRGVDRVFVDH--P-WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFV  233 (502)
Q Consensus       157 ~~~~gv~v~~i~~--p-~~~~~~~~~~~~~~y~~~~g~~~~~~~~r~~~~~~a~~~~~~~l~~~~~~~~~~~~~pDvVih  233 (502)
                      ...+||++||+++  | .|+.+      ..+|+      +.|+..||.+||+++++++..++          ++|| |||
T Consensus       559 ~~~~GV~vyfId~~~~~~fF~R------~~iYg------~~Dn~~RF~~FsrAaLe~~~~~~----------~~PD-IIH  615 (977)
T PLN02939        559 GTVEGLPVYFIEPQHPSKFFWR------AQYYG------EHDDFKRFSYFSRAALELLYQSG----------KKPD-IIH  615 (977)
T ss_pred             EEECCeeEEEEecCCchhccCC------CCCCC------CccHHHHHHHHHHHHHHHHHhcC----------CCCC-EEE
Confidence            8889999999985  3 25554      46786      68999999999999999998764          3699 999


Q ss_pred             EcCCccchHHHHHHHhccCCCCcCCCeEEEEEecCccccccccccccccCCCcccccccccccCCCCCcccchHHHHHHH
Q 010732          234 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAG  313 (502)
Q Consensus       234 ~h~~~t~~~~~~lk~~~~~~~~~~~~pvv~tiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~~~~~~~~~~~~k~~  313 (502)
                      ||||+|++++.+++..+...| +.++|+||||||..|||.|+...+..+++|.....+.+....+    ....+|++|.+
T Consensus       616 ~HDW~TaLV~pll~~~y~~~~-~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~----~~~~iN~LK~G  690 (977)
T PLN02939        616 CHDWQTAFVAPLYWDLYAPKG-FNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDN----AHGRINVVKGA  690 (977)
T ss_pred             ECCccHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhc----cCCchHHHHHH
Confidence            999999998655555565555 4789999999999999999888877788887655433222111    12579999999


Q ss_pred             HHhcCccccCCHHHHHHHHcCCCCCCcchhhhc--cccEEEeeCCCcCCCCCCCcccccccccCcchhccchHHHHHHHH
Q 010732          314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQ  391 (502)
Q Consensus       314 ~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~--~~~i~vI~NGvd~~~~~p~~~~~i~~~~~~~~~~~~k~~~k~~l~  391 (502)
                      +..||.|+|||+.+++++..  .+|..++.+++  ..++.+|+||||.+.|+|.+|++|+.+|+..++ .+|...|.+++
T Consensus       691 Iv~AD~VtTVSptYA~EI~t--e~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl-~GK~~nK~aLR  767 (977)
T PLN02939        691 IVYSNIVTTVSPTYAQEVRS--EGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDL-QGKAANKAALR  767 (977)
T ss_pred             HHhCCeeEeeeHHHHHHHHH--HhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhh-hhhhhhhHHHH
Confidence            99999999999999999985  56776666655  368999999999999999999999999999997 69999999999


Q ss_pred             HHhCCCCC-CCCcEEEEEcCcccccCHHHHHHHHhhcccCCeEEEEEeCCC-hhhHHHHHHHHHHCC--CceEEEeecCh
Q 010732          392 AEVGLPVD-RNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-KPMEKQLEQLEILYP--EKARGVAKFNI  467 (502)
Q Consensus       392 ~~~gl~~~-~~~p~i~~iGrl~~~KG~d~ll~Al~~L~~~~v~lvivG~g~-~~~~~~l~~l~~~~~--~~v~~~~~~~~  467 (502)
                      +++|++.+ ++.|+|+|+||+.++||++.+++|+.++.+.+++|+|+|+|+ +.+++.++++..+++  ++|.+.+.++.
T Consensus       768 kelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de  847 (977)
T PLN02939        768 KQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDE  847 (977)
T ss_pred             HHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCH
Confidence            99999853 678999999999999999999999999877789999999996 456778888888875  57999999998


Q ss_pred             HHHHHHHHhcCEEEEcCCCCCCcHHHHHHHHcCCC
Q 010732          468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV  502 (502)
Q Consensus       468 ~~~~~ila~ADi~l~PS~~E~fglv~lEAma~G~P  502 (502)
                      ...+.+|++||+||+||++||||++++|||+||+|
T Consensus       848 ~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtP  882 (977)
T PLN02939        848 ALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSV  882 (977)
T ss_pred             HHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCC
Confidence            88899999999999999999999999999999987

>PRK14098 glycogen synthase; Provisional Back     alignment and domain information
>PRK14099 glycogen synthase; Provisional Back     alignment and domain information
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type Back     alignment and domain information
>PLN02316 synthase/transferase Back     alignment and domain information
>PRK00654 glgA glycogen synthase; Provisional Back     alignment and domain information
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR02094 more_P_ylases alpha-glucan phosphorylases Back     alignment and domain information
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2 Back     alignment and domain information
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences Back     alignment and domain information
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK10307 putative glycosyl transferase; Provisional Back     alignment and domain information
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase Back     alignment and domain information
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant Back     alignment and domain information
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain Back     alignment and domain information
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family Back     alignment and domain information
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase Back     alignment and domain information
>TIGR02470 sucr_synth sucrose synthase Back     alignment and domain information
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism] Back     alignment and domain information
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02846 digalactosyldiacylglycerol synthase Back     alignment and domain information
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional Back     alignment and domain information
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK10125 putative glycosyl transferase; Provisional Back     alignment and domain information
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional Back     alignment and domain information
>PLN00142 sucrose synthase Back     alignment and domain information
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional Back     alignment and domain information
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose Back     alignment and domain information
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis Back     alignment and domain information
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli Back     alignment and domain information
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria Back     alignment and domain information
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>PLN02949 transferase, transferring glycosyl groups Back     alignment and domain information
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>PLN02501 digalactosyldiacylglycerol synthase Back     alignment and domain information
>PLN02275 transferase, transferring glycosyl groups Back     alignment and domain information
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>PHA01633 putative glycosyl transferase group 1 Back     alignment and domain information
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor Back     alignment and domain information
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming] Back     alignment and domain information
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional Back     alignment and domain information
>TIGR02918 accessory Sec system glycosylation protein GtfA Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>PHA01630 putative group 1 glycosyl transferase Back     alignment and domain information
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding Back     alignment and domain information
>PRK13609 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional Back     alignment and domain information
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3 Back     alignment and domain information
>PLN02605 monogalactosyldiacylglycerol synthase Back     alignment and domain information
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional Back     alignment and domain information
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase Back     alignment and domain information
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed Back     alignment and domain information
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>PRK13608 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc) Back     alignment and domain information
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A Back     alignment and domain information
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase Back     alignment and domain information
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional Back     alignment and domain information
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A Back     alignment and domain information
>TIGR00215 lpxB lipid-A-disaccharide synthase Back     alignment and domain information
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional Back     alignment and domain information
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A Back     alignment and domain information
>PRK10117 trehalose-6-phosphate synthase; Provisional Back     alignment and domain information
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed Back     alignment and domain information
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming] Back     alignment and domain information
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases Back     alignment and domain information
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK14986 glycogen phosphorylase; Provisional Back     alignment and domain information
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like Back     alignment and domain information
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases Back     alignment and domain information
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG Back     alignment and domain information
>PRK14985 maltodextrin phosphorylase; Provisional Back     alignment and domain information
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1 Back     alignment and domain information
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases Back     alignment and domain information
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 Back     alignment and domain information
>TIGR02919 accessory Sec system glycosyltransferase GtfB Back     alignment and domain information
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria Back     alignment and domain information
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length Back     alignment and domain information
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing Back     alignment and domain information
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>TIGR00661 MJ1255 conserved hypothetical protein Back     alignment and domain information
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5 Back     alignment and domain information
>TIGR03492 conserved hypothetical protein Back     alignment and domain information
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional Back     alignment and domain information
>COG1817 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2 Back     alignment and domain information
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A Back     alignment and domain information
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PRK14089 ipid-A-disaccharide synthase; Provisional Back     alignment and domain information
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins Back     alignment and domain information
>PRK10017 colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes Back     alignment and domain information
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [] Back     alignment and domain information
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins Back     alignment and domain information
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK02797 4-alpha-L-fucosyltransferase; Provisional Back     alignment and domain information
>COG4671 Predicted glycosyl transferase [General function prediction only] Back     alignment and domain information
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II Back     alignment and domain information
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR01426 MGT glycosyltransferase, MGT family Back     alignment and domain information
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family Back     alignment and domain information
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS) Back     alignment and domain information
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6 Back     alignment and domain information
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional Back     alignment and domain information
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long) Back     alignment and domain information
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query502
3vue_A 536 Crystal Structure Of Rice Granule Bound Starch Synt 1e-177
3d1j_A477 Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408 2e-43
2qzs_A485 Crystal Structure Of Wild-Type E.Coli Gs In Complex 3e-43
1rzu_A485 Crystal Structure Of The Glycogen Synthase From A. 5e-43
3cop_A485 Crystal Structure Of E.Coli Gs Mutant E377a In Comp 1e-42
1rzv_A485 Crystal Structure Of The Glycogen Synthase From Agr 1e-40
3fro_A439 Crystal Structure Of Pyrococcus Abyssi Glycogen Syn 3e-07
2bis_A440 Structure Of Glycogen Synthase From Pyrococcus Abys 3e-07
3l01_A428 Crystal Structure Of Monomeric Glycogen Synthase Fr 4e-07
2bfw_A200 Structure Of The C Domain Of Glycogen Synthase From 2e-06
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain Length = 536 Back     alignment and structure 
Iteration: 1

 Score =  619 bits (1595), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 287/417 (68%), Positives = 334/417 (80%)
Query: 85  LNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELK 144
           +N++FVG E+APWSKT                  HRVM I+PRYDQYKDAWDT VV E+K
Sbjct: 10  MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIK 69
Query: 145 VGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLC 204
           V D+ E+VRFFHC+KRGVDRVF+DHP FL KVWGKT  KIYGP TG DY+DNQ+RFSLLC
Sbjct: 70  VADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLC 129
Query: 205 QAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFC 264
           QAALEAPRILNLN+N YF G YGEDVVFV NDWHT  +  YLK  Y+P G+Y++AKV FC
Sbjct: 130 QAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFC 189
Query: 265 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324
           IHNI+YQGRFAFED+  LNL  +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVS
Sbjct: 190 IHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVS 249
Query: 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKP 384
           P+YA+EL+SG  +G ELDNI+R TGI GIVNGMDV EW+P  DKYI  KYDA+T ++AK 
Sbjct: 250 PYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKA 309
Query: 385 LLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPM 444
           L KEALQAE GLPVDR IP+I FIGRLEEQKG D++AAAIP  ++E+VQI++LGTGKK  
Sbjct: 310 LNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKF 369
Query: 445 EKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT 501
           EK L+ +E  YP K R V KFN PLAH+I+AGAD + +PSRFEPCGLIQL  MRYGT
Sbjct: 370 EKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGT 426
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s) Length = 477 Back     alignment and structure
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) Length = 485 Back     alignment and structure
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp Length = 485 Back     alignment and structure
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex With Adp And Acceptor Analogue Heppso Length = 485 Back     alignment and structure
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) Length = 485 Back     alignment and structure
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase With Open And Closed Conformations Length = 439 Back     alignment and structure
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi Length = 440 Back     alignment and structure
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From Pyrococcus Abyssi Length = 428 Back     alignment and structure
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From Pyrococcus Abyssi Length = 200 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query502
1rzu_A485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 0.0
2qzs_A485 Glycogen synthase; glycosyl-transferase, GT-B fold 0.0
3fro_A439 GLGA glycogen synthase; glycosyltransferase family 1e-127
2bfw_A200 GLGA glycogen synthase; glycosyltransferase family 1e-63
2iw1_A374 Lipopolysaccharide core biosynthesis protein RFAG; 2e-14
2jjm_A394 Glycosyl transferase, group 1 family protein; anth 2e-14
3nb0_A 725 Glycogen [starch] synthase isoform 2; glycogen syn 5e-14
3okp_A394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 1e-12
3c48_A438 Predicted glycosyltransferases; retaining glycosyl 5e-12
2r60_A 499 Glycosyl transferase, group 1; rossmann-fold; 1.80 7e-11
2x6q_A416 Trehalose-synthase TRET; biosynthetic protein; 2.2 8e-11
3qhp_A166 Type 1 capsular polysaccharide biosynthesis prote 2e-10
3s28_A 816 Sucrose synthase 1; glycosyltransferase, sucrose m 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
2gek_A406 Phosphatidylinositol mannosyltransferase (PIMA); G 8e-06
2iuy_A342 Avigt4, glycosyltransferase; antibiotics, family G 8e-05
3oy2_A 413 Glycosyltransferase B736L; rossmann fold, GDP-mann 2e-04
2x0d_A413 WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge 8e-04
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Length = 485 Back     alignment and structure
 Score =  530 bits (1368), Expect = 0.0
 Identities = 139/420 (33%), Positives = 208/420 (49%), Gaps = 31/420 (7%)

Query: 85  LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELK 144
           +N+L V +E+ P  KTGGL DV+G LP AL A+G R  T+ P Y   K A    V     
Sbjct: 1   MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEF 60

Query: 145 VGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLC 204
                EK          +D + +D P +  +  G      Y  +TG+DY DN  RF+ L 
Sbjct: 61  TDLLGEKADLLEVQHERLDLLILDAPAYYERSGG-----PYLGQTGKDYPDNWKRFAALS 115

Query: 205 QAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFC 264
            AA      +           +  D+V  A+DW  ++ P Y++              +  
Sbjct: 116 LAAARIGAGVLPG--------WRPDMVH-AHDWQAAMTPVYMRYAE-----TPEIPSLLT 161

Query: 265 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324
           IHNIA+QG+F    F  L LPA      + I+ YN       ++++K G+  +  + TVS
Sbjct: 162 IHNIAFQGQFGANIFSKLALPAHA-FGMEGIEYYND------VSFLKGGLQTATALSTVS 214

Query: 325 PHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDA 382
           P YA+E+++ E  G+ L+ +I  R   + GIVNG+D   WNP TD  I   Y A+  +  
Sbjct: 215 PSYAEEILTAE-FGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAAN-LKN 272

Query: 383 KPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 442
           + L K+A+     +  D   P+   I RL  QKG D++A A+   +    +++VLG G  
Sbjct: 273 RALNKKAVAEHFRIDDD-GSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDV 331

Query: 443 PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV 502
            +E  L      +  +      +N PL+H++ AG D I+IPSRFEPCGL QL+A+RYG +
Sbjct: 332 ALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCI 391
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Length = 485 Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A* 3l01_A* Length = 439 Back     alignment and structure
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 Length = 200 Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Length = 374 Back     alignment and structure
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Length = 394 Back     alignment and structure
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* Length = 725 Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Length = 394 Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Length = 438 Back     alignment and structure
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Length = 499 Back     alignment and structure
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Length = 416 Back     alignment and structure
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} Length = 166 Back     alignment and structure
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* Length = 816 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Length = 406 Back     alignment and structure
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Length = 342 Back     alignment and structure
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Length = 413 Back     alignment and structure
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* Length = 413 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query502
3vue_A 536 GBSS-I, granule-bound starch synthase 1, chloropla 100.0
2qzs_A485 Glycogen synthase; glycosyl-transferase, GT-B fold 100.0
1rzu_A485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 100.0
3fro_A439 GLGA glycogen synthase; glycosyltransferase family 100.0
3c48_A438 Predicted glycosyltransferases; retaining glycosyl 100.0
2r60_A 499 Glycosyl transferase, group 1; rossmann-fold; 1.80 100.0
3okp_A394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 99.98
3nb0_A 725 Glycogen [starch] synthase isoform 2; glycogen syn 99.97
3s28_A 816 Sucrose synthase 1; glycosyltransferase, sucrose m 99.97
2iw1_A374 Lipopolysaccharide core biosynthesis protein RFAG; 99.97
2iuy_A342 Avigt4, glycosyltransferase; antibiotics, family G 99.96
2gek_A406 Phosphatidylinositol mannosyltransferase (PIMA); G 99.96
2jjm_A394 Glycosyl transferase, group 1 family protein; anth 99.96
2x6q_A416 Trehalose-synthase TRET; biosynthetic protein; 2.2 99.96
3oy2_A 413 Glycosyltransferase B736L; rossmann fold, GDP-mann 99.95
1l5w_A 796 Maltodextrin phosphorylase; enzymatic catalysis, s 99.94
2c4m_A 796 Glycogen phosphorylase; allosteric control, phosph 99.93
2x0d_A413 WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge 99.91
2hy7_A406 Glucuronosyltransferase GUMK; glycosyltransferases 99.89
2gj4_A 824 Glycogen phosphorylase, muscle form; transferase; 99.88
1f0k_A364 MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe 99.87
2vsy_A568 XCC0866; transferase, glycosyl transferase, GT-B, 99.86
1uqt_A 482 Alpha, alpha-trehalose-phosphate synthase; glycosy 99.85
3beo_A375 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a 99.82
3t5t_A496 Putative glycosyltransferase; GTB fold, pseudoglyc 99.82
2bfw_A200 GLGA glycogen synthase; glycosyltransferase family 99.8
1vgv_A384 UDP-N-acetylglucosamine 2-epimerase; structural ge 99.8
1v4v_A376 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t 99.69
3qhp_A166 Type 1 capsular polysaccharide biosynthesis prote 99.67
2f9f_A177 First mannosyl transferase (WBAZ-1); alpha-beta pr 99.61
2xci_A374 KDO-transferase, 3-deoxy-D-manno-2-octulosonic aci 99.61
3ot5_A403 UDP-N-acetylglucosamine 2-epimerase; structural ge 99.4
3otg_A412 CALG1; calicheamicin, TDP, structural genomics, PS 99.38
3rhz_A339 GTF3, nucleotide sugar synthetase-like protein; gl 99.37
3dzc_A396 UDP-N-acetylglucosamine 2-epimerase; structural ge 99.32
3s2u_A365 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape 99.31
4fzr_A398 SSFS6; structural genomics, PSI-biology, protein s 99.17
2iyf_A 430 OLED, oleandomycin glycosyltransferase; antibiotic 99.1
3oti_A398 CALG3; calicheamicin, TDP, structural genomics, PS 99.04
4hwg_A385 UDP-N-acetylglucosamine 2-epimerase; ssgcid, struc 99.03
3tsa_A391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 98.95
3ia7_A402 CALG4; glycosysltransferase, calicheamicin, enediy 98.94
3rsc_A415 CALG2; TDP, enediyne, structural genomics, PSI-2, 98.85
2p6p_A384 Glycosyl transferase; X-RAY-diffraction,urdamycina 98.81
3h4t_A404 Glycosyltransferase GTFA, glycosyltransferase; van 98.43
4amg_A400 Snogd; transferase, polyketide biosynthesis, GT1 f 98.36
1ygp_A 879 Yeast glycogen phosphorylase; phosphorylated form, 98.34
2iya_A424 OLEI, oleandomycin glycosyltransferase; carbohydra 98.25
2yjn_A441 ERYCIII, glycosyltransferase; transferase, cytochr 98.24
3q3e_A631 HMW1C-like glycosyltransferase; N-glycosylation; 2 97.84
1rrv_A416 Glycosyltransferase GTFD; GT-B, glycosyltransferas 97.81
2o6l_A170 UDP-glucuronosyltransferase 2B7; drug metabolism, 97.48
3tov_A349 Glycosyl transferase family 9; structural genomics 96.92
1psw_A348 ADP-heptose LPS heptosyltransferase II; structural 95.75
3hbm_A282 UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter je 95.73
1iir_A415 Glycosyltransferase GTFB; rossmann fold; 1.80A {Am 94.87
4gyw_A723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 94.19
2gt1_A326 Lipopolysaccharide heptosyltransferase-1; GT-B fol 84.0
2jzc_A224 UDP-N-acetylglucosamine transferase subunit ALG13; 82.0
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A* Back     alignment and structure
Probab=100.00  E-value=4.6e-68  Score=574.83  Aligned_cols=421  Identities=72%  Similarity=1.234  Sum_probs=378.9

Q ss_pred             cCCceEEEEeeeccCccccccHHHHHhhhHHHHHHCCCeEEEEEecCCCCccccCCceEEEEEeCCeeeEEEEEEEeecC
Q 010732           82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRG  161 (502)
Q Consensus        82 ~~~MkIl~V~~~~~P~~~~GG~~~~v~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  161 (502)
                      +..||||||++|++|+.|+||+++++++|+++|+++||+|.|++|.|+.+.+.++......+.++.+...+++++...+|
T Consensus         7 ~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   86 (536)
T 3vue_A            7 HHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRG   86 (536)
T ss_dssp             -CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEETT
T ss_pred             CCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEECC
Confidence            34799999999999999999999999999999999999999999999999998888888899999999999999999999


Q ss_pred             ceEEEEeCCcccccccCCCCCcccCCCCCCCCcchHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCEEEEEcCCccch
Q 010732          162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSL  241 (502)
Q Consensus       162 v~v~~i~~p~~~~~~~~~~~~~~y~~~~g~~~~~~~~r~~~~~~a~~~~~~~l~~~~~~~~~~~~~pDvVih~h~~~t~~  241 (502)
                      |++||+++|.++.+.+++++..+|++..|.+|.|+..||.+||++++++.+.+++...+++.+.+++|+|+|+|||+|++
T Consensus        87 v~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~hDW~t~l  166 (536)
T 3vue_A           87 VDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGP  166 (536)
T ss_dssp             EEEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEEESGGGST
T ss_pred             ceEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEECcchHHH
Confidence            99999999999999999999999999999999999999999999999999999888888888888888799999999999


Q ss_pred             HHHHHHHhccCCCCcCCCeEEEEEecCccccccccccccccCCCcccccccccccCCCCCcccchHHHHHHHHHhcCccc
Q 010732          242 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVL  321 (502)
Q Consensus       242 ~~~~lk~~~~~~~~~~~~pvv~tiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi  321 (502)
                      +|.+++..++..+.+.++|+|+|+||..+||.|+...+..++++.......++...+..+.....+++++.++..||+|+
T Consensus       167 ~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k~~i~~ad~v~  246 (536)
T 3vue_A          167 LASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVL  246 (536)
T ss_dssp             HHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHHHHHHHCSEEE
T ss_pred             HHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHHHHHHhccEEE
Confidence            99999999998898999999999999999999999999999998887777677777777777788999999999999999


Q ss_pred             cCCHHHHHHHHcCCCCCCcchhhhccccEEEeeCCCcCCCCCCCcccccccccCcchhccchHHHHHHHHHHhCCCCCCC
Q 010732          322 TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN  401 (502)
Q Consensus       322 ~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~NGvd~~~~~p~~~~~i~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~  401 (502)
                      |||+.+++++.+...+|.+++...+..++.+|+||+|.+.|+|.+|.+|+.+|+..+....|...|.++++++|++.|++
T Consensus       247 tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~  326 (536)
T 3vue_A          247 TVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRK  326 (536)
T ss_dssp             ESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCCCTT
T ss_pred             EcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCCCCC
Confidence            99999999998755677777777778899999999999999999999999999999988999999999999999999999


Q ss_pred             CcEEEEEcCcccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeecChHHHHHHHHhcCEEE
Q 010732          402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL  481 (502)
Q Consensus       402 ~p~i~~iGrl~~~KG~d~ll~Al~~L~~~~v~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~ila~ADi~l  481 (502)
                      .|+|+|+||+.++||++.|++|+++|.+++.+++++|.|++..++.++++...+++++.+.+.++.++++.+|++||++|
T Consensus       327 ~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD~~v  406 (536)
T 3vue_A          327 IPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLA  406 (536)
T ss_dssp             SCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHHHHHHHHHCSEEE
T ss_pred             CcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHHHHHHHHhhheee
Confidence            99999999999999999999999999888999999999998888889999999999999999999999999999999999


Q ss_pred             EcCCCCCCcHHHHHHHHcCCC
Q 010732          482 IPSRFEPCGLIQLHAMRYGTV  502 (502)
Q Consensus       482 ~PS~~E~fglv~lEAma~G~P  502 (502)
                      +||++|+||++++|||+||+|
T Consensus       407 ~PS~~E~fgl~~lEAma~G~P  427 (536)
T 3vue_A          407 VPSRFEPCGLIQLQGMRYGTP  427 (536)
T ss_dssp             ECCSCCSSCSHHHHHHHTTCC
T ss_pred             cccccCCCCHHHHHHHHcCCC
Confidence            999999999999999999998
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Back     alignment and structure
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Back     alignment and structure
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Back     alignment and structure
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* Back     alignment and structure
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Back     alignment and structure
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Back     alignment and structure
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Back     alignment and structure
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Back     alignment and structure
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Back     alignment and structure
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Back     alignment and structure
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Back     alignment and structure
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} Back     alignment and structure
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* Back     alignment and structure
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A* Back     alignment and structure
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... Back     alignment and structure
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A* Back     alignment and structure
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A Back     alignment and structure
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A* Back     alignment and structure
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 Back     alignment and structure
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* Back     alignment and structure
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 Back     alignment and structure
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} Back     alignment and structure
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8 Back     alignment and structure
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A* Back     alignment and structure
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A* Back     alignment and structure
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae} Back     alignment and structure
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii} Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A Back     alignment and structure
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} Back     alignment and structure
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula} Back     alignment and structure
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7 Back     alignment and structure
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* Back     alignment and structure
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* Back     alignment and structure
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 502
d1rzua_477 c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacte 3e-78
d2bisa1437 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyro 5e-25
d1uqta_456 c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA 6e-04
d2bfwa1196 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Py 0.001
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Length = 477 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  250 bits (639), Expect = 3e-78
 Identities = 137/419 (32%), Positives = 202/419 (48%), Gaps = 31/419 (7%)

Query: 86  NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKV 145
           N+L V +E+ P  KTGGL DV+G LP AL A+G R  T+ P Y   K A    V      
Sbjct: 2   NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFT 61

Query: 146 GDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQ 205
               EK          +D + +D P +  +  G      Y  +TG+DY DN  RF+ L  
Sbjct: 62  DLLGEKADLLEVQHERLDLLILDAPAYYERSGG-----PYLGQTGKDYPDNWKRFAALSL 116

Query: 206 AALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCI 265
           AA      +          P     +  A+DW  ++ P Y++    P+        +  I
Sbjct: 117 AAARIGAGVL---------PGWRPDMVHAHDWQAAMTPVYMRYAETPE-----IPSLLTI 162

Query: 266 HNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325
           HNIA+QG+F    F  L LPA          G         ++++K G+  +  + TVSP
Sbjct: 163 HNIAFQGQFGANIFSKLALPAHA-------FGMEGIEYYNDVSFLKGGLQTATALSTVSP 215

Query: 326 HYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAK 383
            YA+E+++ E  G+ L+ +I  R   + GIVNG+D   WNP TD  I   Y A   +  +
Sbjct: 216 SYAEEILTAE-FGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSA-ANLKNR 273

Query: 384 PLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKP 443
            L K+A+     +  D   P+   I RL  QKG D++A A+   +    +++VLG G   
Sbjct: 274 ALNKKAVAEHFRID-DDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVA 332

Query: 444 MEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV 502
           +E  L      +  +      +N PL+H++ AG D I+IPSRFEPCGL QL+A+RYG +
Sbjct: 333 LEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCI 391
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Length = 437 Back     information, alignment and structure
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} Length = 456 Back     information, alignment and structure
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Length = 196 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query502
d1rzua_477 Glycogen synthase 1, GlgA {Agrobacterium tumefacie 100.0
d2bisa1437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 100.0
d2iw1a1370 Lipopolysaccharide core biosynthesis protein RfaG 99.95
d2bfwa1196 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 99.8
d1uqta_456 Trehalose-6-phosphate synthase, OtsA {Escherichia 99.75
d2f9fa1166 First mannosyl transferase WbaZ {Archaeoglobus ful 99.59
d1l5wa_ 796 Maltodextrin phosphorylase (MALP) {Escherichia col 99.04
d2gj4a1 824 Glycogen phosphorylase {Rabbit (Oryctolagus cunicu 98.97
d1ygpa_ 876 Glycogen phosphorylase {Baker's yeast (Saccharomyc 98.43
d1pn3a_391 TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi 98.14
d1f0ka_351 Peptidoglycan biosynthesis glycosyltransferase Mur 98.1
d1rrva_401 TDP-vancosaminyltransferase GftD {Amycolatopsis or 98.09
d1iira_401 UDP-glucosyltransferase GtfB {Amycolatopsis orient 97.46
d1v4va_373 UDP-N-acetylglucosamine 2-epimerase {Thermus therm 96.5
d2acva1461 Triterpene UDP-glucosyl transferase UGT71G1 {Medic 94.8
d1f6da_376 UDP-N-acetylglucosamine 2-epimerase {Escherichia c 94.2
d1o6ca_377 UDP-N-acetylglucosamine 2-epimerase {Bacillus subt 93.6
d1jaya_212 Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae 83.65
d1ks9a2167 Ketopantoate reductase PanE {Escherichia coli [Tax 82.03
d1pswa_348 ADP-heptose LPS heptosyltransferase II {Escherichi 81.55
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=6.7e-50  Score=423.60  Aligned_cols=389  Identities=34%  Similarity=0.535  Sum_probs=315.9

Q ss_pred             ceEEEEeeeccCccccccHHHHHhhhHHHHHHCCCeEEEEEecCCCCccccCCceEEEEEeCCeeeEEEEEEEeecCceE
Q 010732           85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR  164 (502)
Q Consensus        85 MkIl~V~~~~~P~~~~GG~~~~v~~La~aLa~~Gh~V~vitp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v  164 (502)
                      |||+||+++|+|+.++||+|+++.+|+++|+++||+|+|++|.|+...+.+.......-........++.++....|+++
T Consensus         1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (477)
T d1rzua_           1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLGEKADLLEVQHERLDL   80 (477)
T ss_dssp             CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSSSCCEEEEEEEETTEEE
T ss_pred             CEEEEEEEeeecccccCcHHHHHHHHHHHHHHcCCeEEEEecCCcchhhhcccceEEEEEeccCCceEEEEEEEECCeeE
Confidence            99999999999988899999999999999999999999999999876665444432221222222345667777899999


Q ss_pred             EEEeCCcccccccCCCCCcccCCCCCCCCcchHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCEEEEEcCCccchHHH
Q 010732          165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC  244 (502)
Q Consensus       165 ~~i~~p~~~~~~~~~~~~~~y~~~~g~~~~~~~~r~~~~~~a~~~~~~~l~~~~~~~~~~~~~pDvVih~h~~~t~~~~~  244 (502)
                      |++++|.++.+.+     .+|....+.+|.++..++..+++++.++++....        .++|| |||+|+|++++.+.
T Consensus        81 ~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~pD-IvH~h~~~~~l~~~  146 (477)
T d1rzua_          81 LILDAPAYYERSG-----GPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLP--------GWRPD-MVHAHDWQAAMTPV  146 (477)
T ss_dssp             EEEECHHHHCSSS-----CSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSS--------SCCCS-EEEEEHHHHTTHHH
T ss_pred             EEecChhhcccCC-----CcccCcccccccccHHHHHHHHHHHHhhhhhccc--------CCCCC-EEEecchhHHHHHH
Confidence            9999998876632     4566677888999999999999998887766431        35799 99999999999988


Q ss_pred             HHHHhccCCCCcCCCeEEEEEecCccccccccccccccCCCcccccccccccCCCCCcccchHHHHHHHHHhcCccccCC
Q 010732          245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS  324 (502)
Q Consensus       245 ~lk~~~~~~~~~~~~pvv~tiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS  324 (502)
                      +++....     .++|+|+|+|+..++..++...+..+..+......-.       ......+++++..+..+|.++++|
T Consensus       147 ~~~~~~~-----~~ip~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ad~~~~vs  214 (477)
T d1rzua_         147 YMRYAET-----PEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEG-------IEYYNDVSFLKGGLQTATALSTVS  214 (477)
T ss_dssp             HHHHSSS-----CCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTT-------TEETTEEEHHHHHHHHCSEEEESC
T ss_pred             HHHHhhC-----CCCCEEEEEecccccccCCHHHHHHhhcchhhccccc-------ccccchhHHHHHHHHhhhhhhhcc
Confidence            8875432     5799999999998888878777766666655432100       011134567788888999999999


Q ss_pred             HHHHHHHHcCCCCCCcchhhhc--cccEEEeeCCCcCCCCCCCcccccccccCcchhccchHHHHHHHHHHhCCCCCCCC
Q 010732          325 PHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI  402 (502)
Q Consensus       325 ~~~~~~l~~~~~~g~~~~~~~~--~~~i~vI~NGvd~~~~~p~~~~~i~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~  402 (502)
                      +.+++++.. ..+|...+.+.+  ..++.+|+||+|.+.|+|..+++|+.+++.... ..+...+++++...+++ +++.
T Consensus       215 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~p~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~  291 (477)
T d1rzua_         215 PSYAEEILT-AEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANL-KNRALNKKAVAEHFRID-DDGS  291 (477)
T ss_dssp             HHHHHHTTS-HHHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBC-TTHHHHHHHHHHHHTCC-CSSS
T ss_pred             HHHHHHHHH-HhcCcchhhhhhhccccEEEEECCcchhhccccccccccccchhhhH-HHhhhhHHHHHHhcccc-cCCc
Confidence            999998764 234444443333  358999999999999999999999888876653 56667788889999987 5678


Q ss_pred             cEEEEEcCcccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeecChHHHHHHHHhcCEEEE
Q 010732          403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI  482 (502)
Q Consensus       403 p~i~~iGrl~~~KG~d~ll~Al~~L~~~~v~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~ila~ADi~l~  482 (502)
                      |+|+|+||+.++||+|.|++|++++.+.+.+++++|.|++.....++++...+++++.+.+.++.++.+.++++||++|+
T Consensus       292 ~~i~~vgrl~~~KG~~~Ll~a~~~~~~~~~~l~~~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD~~v~  371 (477)
T d1rzua_         292 PLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIII  371 (477)
T ss_dssp             CEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEeeeeecCCcHHHHHHHHHHHhhCCeEEEEecCCchHHHHHHHHHhhcCCeEEEEcccChhHHHHHHHhCccccC
Confidence            89999999999999999999999998889999999999987778888888889999999999999999999999999999


Q ss_pred             cCCCCCCcHHHHHHHHcCCC
Q 010732          483 PSRFEPCGLIQLHAMRYGTV  502 (502)
Q Consensus       483 PS~~E~fglv~lEAma~G~P  502 (502)
                      ||.+|+||++++|||+||+|
T Consensus       372 PS~~E~fglv~lEAma~G~P  391 (477)
T d1rzua_         372 PSRFEPCGLTQLYALRYGCI  391 (477)
T ss_dssp             CCSCCSSCSHHHHHHHHTCE
T ss_pred             CccccCCCHHHHHHHHcCCC
Confidence            99999999999999999998
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]} Back     information, alignment and structure
>d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]} Back     information, alignment and structure