Citrus Sinensis ID: 010733
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 502 | 2.2.26 [Sep-21-2011] | |||||||
| B0JZE1 | 513 | Protein spinster homolog | yes | no | 0.432 | 0.423 | 0.255 | 4e-06 | |
| Q9GQQ0 | 605 | Protein spinster OS=Droso | no | no | 0.786 | 0.652 | 0.208 | 5e-06 | |
| A2SWM2 | 504 | Protein spinster homolog | yes | no | 0.440 | 0.438 | 0.226 | 1e-05 | |
| Q91VM4 | 549 | Protein spinster homolog | yes | no | 0.352 | 0.322 | 0.253 | 1e-05 | |
| Q8IVW8 | 549 | Protein spinster homolog | yes | no | 0.350 | 0.320 | 0.262 | 1e-05 | |
| Q5XGK0 | 526 | Protein spinster homolog | N/A | no | 0.731 | 0.697 | 0.188 | 8e-05 | |
| P33449 | 389 | Multidrug resistance prot | yes | no | 0.262 | 0.339 | 0.264 | 0.0003 | |
| Q6GIU7 | 388 | Quinolone resistance prot | yes | no | 0.336 | 0.435 | 0.223 | 0.0007 | |
| Q5HHX4 | 388 | Quinolone resistance prot | yes | no | 0.703 | 0.909 | 0.221 | 0.0008 | |
| Q6GBD5 | 388 | Quinolone resistance prot | yes | no | 0.336 | 0.435 | 0.223 | 0.0008 |
| >sp|B0JZE1|SPNS2_XENTR Protein spinster homolog 2 OS=Xenopus tropicalis GN=spns2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 105/254 (41%), Gaps = 37/254 (14%)
Query: 10 LVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSL-TLFRSIVQSFCY--PLAAYLSA 66
+++ ++ D + GV ++ +G G L T+F + SF P+ YL
Sbjct: 68 ILSVGNVLNYLDRYTVAGVLLDIQQHFEVKDSGAGLLQTVF---ICSFMVAAPIFGYLGD 124
Query: 67 HHNRAHVIALGAFLWAAATFLVAF--SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTD 124
NR +++ G F W+A TF +F F+ + +SRGL GIG A +++ D
Sbjct: 125 RFNRKVILSSGIFFWSAITFSSSFIPKKYFWLLVLSRGLVGIGEASYSTIAPTIIGDLFT 184
Query: 125 ETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG-WRLAFHLVGLISVIVGVLVH 183
+ R + LGS LG I +S + G WR A + ++ VI G L+
Sbjct: 185 KNTRTLMLSVFYFAIPLGSGLG-----YITGSSVKQVAGDWRWALRVSPVLGVITGTLLL 239
Query: 184 VYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSA 243
++ AK G K I D + +IK ++ VF S + S
Sbjct: 240 IFVPT----AKRGHAEQLKG--------SSWIRDMRGLIKNRSY-------VFSSLATST 280
Query: 244 FAFA----AMWLEL 253
+FA MW+ L
Sbjct: 281 VSFATGALGMWIPL 294
|
Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration. Xenopus tropicalis (taxid: 8364) |
| >sp|Q9GQQ0|SPIN_DROME Protein spinster OS=Drosophila melanogaster GN=spin PE=1 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 88/422 (20%), Positives = 167/422 (39%), Gaps = 27/422 (6%)
Query: 2 KSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLA 61
+S+ T+ ++ F ++ D + GV +V G L I C P+
Sbjct: 111 RSQWFTVTVLCFVNLINYMDRFTIAGVLTDVRNDFDIGNDSAGLLQTVFVISYMVCAPIF 170
Query: 62 AYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVAD 121
YL ++R ++A+G LW+ T L +F F R L GIG A ++++D
Sbjct: 171 GYLGDRYSRPWIMAVGVGLWSTTTLLGSFMKQFGWFIAFRALVGIGEASYSTIAPTIISD 230
Query: 122 STDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVL 181
R +GS LG ++ S + WR A + ++ IV V
Sbjct: 231 LFVHDMRSKMLALFYFAIPVGSGLG----YIVGSKTAHLANDWRWALRVTPILG-IVAVF 285
Query: 182 VHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSG 241
+ + DP +G+ + + DIK L+ + ++ F + ++ G
Sbjct: 286 LILLIKDPVRGHSEGSH--NLEATTYKQDIKALVRNRSFMLSTAGFTCVAFVAGALAWWG 343
Query: 242 SAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQ----RLPDSGRVI 297
+F + M ++ G + + + F + L GL G +G L+Q R P + VI
Sbjct: 344 PSFIYLGMKMQ-PGNENIVQDDVAFNFGVITMLAGLLGVPLGSFLSQYLVKRYPTADPVI 402
Query: 298 LSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPER 357
+ S LLV + T L +F L ++ N + + +VP R
Sbjct: 403 CAFGLLVSAPLLTGACLLVNSNSVGTYAL----IFFGQLALNLNWAIVADILLYVVVPTR 458
Query: 358 CRTSIYALDQSFE-----SIPSSFAPAVVGILAQHVYGY-KPIPQDASNSVEIETDRENA 411
T+ ++F+ ++ + +P +VG +++ + + P D+ + E+ + + A
Sbjct: 459 RSTA-----EAFQILISHALGDAGSPYLVGAISEAIMKHLHKNPSDSGLTTELRSMSQVA 513
Query: 412 AS 413
S
Sbjct: 514 GS 515
|
Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage. Involved in TGF-beta-mediated synaptic growth regulation both pre- and postsynaptically via its function in endosomal storage regulation. Also required during oogenesis by regulating yolk spheres storage. Drosophila melanogaster (taxid: 7227) |
| >sp|A2SWM2|SPNS2_DANRE Protein spinster homolog 2 OS=Danio rerio GN=spns2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 13/234 (5%)
Query: 10 LVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSL-TLFRSIVQSFCY--PLAAYLSA 66
+++F ++ D + GV ++ + G L T+F + SF P+ YL
Sbjct: 60 ILSFGNVLNYMDRYTVAGVLLDIQKQFKVGDSSAGLLQTVF---ICSFMVAAPIFGYLGD 116
Query: 67 HHNRAHVIALGAFLWAAATFLVAF--SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTD 124
NR +++ G F W+A T L +F ++ + +SR L GIG + +++ D
Sbjct: 117 RFNRKIILSCGIFFWSAVTLLSSFITKEYYWLLVLSRCLVGIGESSYSSISPTIIGDLFT 176
Query: 125 ETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHV 184
R + L LGS LG ++ S + W A + ++ + G L+ +
Sbjct: 177 NNKRTVMLSVFYLAIPLGSGLG----YILGSIAKDAGGHWYWALRVSPMLGLTAGTLILI 232
Query: 185 YANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVI-KIPTFQIIVAQGVFG 237
+ ++P+ + D K R + D+K L + V + + + A G FG
Sbjct: 233 FVSEPKRGSADQPGGRLKTRTSWVCDMKALAKNRSYVFSSLASAAVSFATGAFG 286
|
Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration. Danio rerio (taxid: 7955) |
| >sp|Q91VM4|SPNS2_MOUSE Protein spinster homolog 2 OS=Mus musculus GN=Spns2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 80/201 (39%), Gaps = 24/201 (11%)
Query: 59 PLAAYLSAHHNRAHVIALGAFLWAAATFLVAF--SSTFFQVAVSRGLNGIGLAIVIPAIQ 116
P+ YL NR +++ G F W+A TF +F F+ + +SRGL GIG A
Sbjct: 156 PIFGYLGDRFNRKVILSCGIFFWSAVTFSSSFIPQQYFWLLVLSRGLVGIGEASYSTIAP 215
Query: 117 SLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISV 176
+++ D + R + LGS LG + S+ W A + ++ +
Sbjct: 216 TIIGDLFTKNTRTLMLSVFYFAIPLGSGLG----YITGSSVKQAAGDWHWALRVSPVLGM 271
Query: 177 IVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVF 236
I G L+ + + D K R + D+K LI + VF
Sbjct: 272 ITGTLILILVPATKRGHADQLGGQLKARTSWLRDMKALIRNRSY--------------VF 317
Query: 237 GSFSGSAFAFA----AMWLEL 253
S + SA +FA MW+ L
Sbjct: 318 SSLATSAVSFATGALGMWIPL 338
|
Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration. Mus musculus (taxid: 10090) |
| >sp|Q8IVW8|SPNS2_HUMAN Protein spinster homolog 2 OS=Homo sapiens GN=SPNS2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 81/202 (40%), Gaps = 26/202 (12%)
Query: 59 PLAAYLSAHHNRAHVIALGAFLWAAATFLVAF--SSTFFQVAVSRGLNGIGLAIVIPAIQ 116
P+ YL NR +++ G F W+A TF +F F+ + +SRGL GIG A
Sbjct: 156 PIFGYLGDRFNRKVILSCGIFFWSAVTFSSSFIPQQYFWLLVLSRGLVGIGEASYSTIAP 215
Query: 117 SLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG-WRLAFHLVGLIS 175
+++ D + R + LGS LG I +S G W A + ++
Sbjct: 216 TIIGDLFTKNTRTLMLSVFYFAIPLGSGLG-----YITGSSVKQAAGDWHWALRVSPVLG 270
Query: 176 VIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGV 235
+I G L+ + + D K R + D+K LI + V
Sbjct: 271 MITGTLILILVPATKRGHADQLGDQLKARTSWLRDMKALIRNRSY--------------V 316
Query: 236 FGSFSGSAFAFA----AMWLEL 253
F S + SA +FA MW+ L
Sbjct: 317 FSSLATSAVSFATGALGMWIPL 338
|
Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration. Homo sapiens (taxid: 9606) |
| >sp|Q5XGK0|SPNS1_XENLA Protein spinster homolog 1 OS=Xenopus laevis GN=spns1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 79/418 (18%), Positives = 167/418 (39%), Gaps = 51/418 (12%)
Query: 2 KSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLA 61
K + ++++ + ++ D + GV ++ A + + G + F P+
Sbjct: 56 KRSVIIVIILFYINLLNYMDRFTVAGVLPDIKKAFNISDSNSGLVQTVFICSYMFLAPVF 115
Query: 62 AYLSAHHNRAHVIALGAFLWAAATFLVAFSST--FFQVAVSRGLNGIGLAIVIPAIQSLV 119
YL +NR ++ +G W+ T L +F S F+ ++RGL G+G A +++
Sbjct: 116 GYLGDRYNRKLIMCVGISFWSLVTLLSSFVSNQYFWLFLITRGLVGVGEASYSTIAPTII 175
Query: 120 AD--STDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVI 177
AD D+ R ++F Y + +G ++ S W A + + ++
Sbjct: 176 ADLFLADQRTRMLSF------FYFATPVGCGLGYIVGSEMTSAAGDWHWALRVTPGLGLL 229
Query: 178 VGVLVHVYANDPRCLAKDGTKIDHKPRRPF----WADIKDLITDAKMVIKIPTFQIIVAQ 233
+L+ A +P A ++ K RP W+ +D K ++K P+F
Sbjct: 230 AVLLLIFVAEEPPRGA-----LERKTDRPLTNTSWS------SDMKALLKNPSF------ 272
Query: 234 GVFGSFSGSAFAFAAMWLELIGFSHKLTAFLM-----------------TLFVIAFCLGG 276
+ +F + AF L L G ++ + + ++ +F C+ G
Sbjct: 273 -ILSTFGFTTVAFVTGALALWGPTYLMRSRMVIYKSKPCEGGICNYDDSMIFGGITCITG 331
Query: 277 LFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGL 336
+ G G +++R + + A +I +A L L L ++ + +FI
Sbjct: 332 ILGVLTGVEISKRYRKTNPRADPLVCAVGMISSAPFLFLSLAFADTSLVATYVFIFIGET 391
Query: 337 CMSWNAPATNNPIFAEIVPERCRTSIYALDQSFES-IPSSFAPAVVGILAQHVYGYKP 393
+S N + + ++P R R++ AL + + +P ++G+++ + KP
Sbjct: 392 LLSLNWALVADILLYVVIPTR-RSTAEALQIVVSHLLGDAGSPYLIGVISDQIQKGKP 448
|
Sphingolipid transporter. Xenopus laevis (taxid: 8355) |
| >sp|P33449|BMR1_BACSU Multidrug resistance protein 1 OS=Bacillus subtilis (strain 168) GN=bmr PE=3 SV=2 | Back alignment and function description |
|---|
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 4/136 (2%)
Query: 2 KSETLTLVLVN-FAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPL 60
K+ TLT++L N F A + ++ V + LH T +G + +I Q P+
Sbjct: 4 KNITLTILLTNLFIAFL---GIGLVIPVTPTIMNELHLSGTAVGYMVACFAITQLIVSPI 60
Query: 61 AAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVA 120
A R +I +G ++ + FL T + +SR L GI A ++P + + +A
Sbjct: 61 AGRWVDRFGRKIMIVIGLLFFSVSEFLFGIGKTVEMLFISRMLGGISAAFIMPGVTAFIA 120
Query: 121 DSTDETNRGMAFGWLQ 136
D T R A G++
Sbjct: 121 DITTIKTRPKALGYMS 136
|
Energy-dependent efflux pump responsible for decreased drug accumulation in multi-drug-resistant cells. Probably uses a transmembrane proton gradient as the energy source. Causes the efflux of a variety of toxic substances, including such structurally diverse compounds as ethidium bromide, rhodamine and acridine dyes, tetraphenylphosphonium, puromycin, chloramphenicol, doxorubicin, and fluoroquinolone antibiotics. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q6GIU7|NORA_STAAR Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MRSA252) GN=norA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 19/188 (10%)
Query: 24 MLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83
+LP K++G + LG L ++ Q P L+ + +I +G L++
Sbjct: 25 VLPVYLKDLG----LTGSDLGLLVAAFALSQMIISPFGGTLADKLGKKLIICIGLILFSV 80
Query: 84 ATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGS 143
+ F+ A F + +SR + G+ +V+P + L+AD + + FG++ G
Sbjct: 81 SEFMFAVGHNFSVLMLSRVIGGMSAGMVMPGVTGLIADVSPSHQKAKNFGYMSAIINSGF 140
Query: 144 VLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDG------- 196
+LG +A S R+ F+ G + ++ ++ V +DP+ G
Sbjct: 141 ILGPGIGGFMAEVS------HRMPFYFAGALGILAFIMSVVLIHDPKKSTTSGFQKLEPQ 194
Query: 197 --TKIDHK 202
TKI+ K
Sbjct: 195 LLTKINWK 202
|
Involved in quinolone resistance. May constitute a membrane-associated active efflux pump of hydrophilic quinolones. Staphylococcus aureus (strain MRSA252) (taxid: 282458) |
| >sp|Q5HHX4|NORA_STAAC Quinolone resistance protein NorA OS=Staphylococcus aureus (strain COL) GN=norA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 165/401 (41%), Gaps = 48/401 (11%)
Query: 24 MLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83
+LP K++G + LG L ++ Q P L+ + +I +G L++
Sbjct: 25 VLPVYLKDLGLT----GSDLGLLVAAFALSQMIISPFGGTLADKLGKKLIICIGLILFSV 80
Query: 84 ATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGS 143
+ F+ A F + +SR + G+ +V+P + L+AD + + FG++ G
Sbjct: 81 SEFMFAVGHNFSVLMLSRVIGGMSAGMVMPGVTGLIADISPSHQKAKNFGYMSAIINSGF 140
Query: 144 VLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKP 203
+LG +A S R+ F+ G + ++ ++ V +DP+ G + +P
Sbjct: 141 ILGPGIGGFMAEVS------HRMPFYFAGALGILAFIMSIVLIHDPKKSTTSGFQ-KLEP 193
Query: 204 RRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAFA--FAAMWLELIGFSHKLT 261
+ + K IT + + + SF SAF ++ + + +S K
Sbjct: 194 QLLTKINWKVFITPVILTLVL-------------SFGLSAFETLYSLYTADKVNYSPKDI 240
Query: 262 AFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQIS--AASVIPTAAVL-LLVLP 318
+ IA GG+FG + D S+++ A S++ + VL LLV
Sbjct: 241 S-------IAITGGGIFGA----LFQIYFFDKFMKYFSELTFIAWSLLYSVVVLILLVFA 289
Query: 319 DDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAP 378
+D + L +FI G M PA N F+ I ER + L+ +F S+ + P
Sbjct: 290 NDYWSIMLISFVVFI-GFDMI--RPAITN-YFSNIAGERQGFA-GGLNSTFTSMGNFIGP 344
Query: 379 AVVGILAQ-HVYG--YKPIPQDASNSVEIETDRENAASLAK 416
+ G L H+ Y I + V + ++++ A L +
Sbjct: 345 LIAGALFDVHIEAPIYMAIGVSLAGVVIVLIEKQHRAKLKE 385
|
Involved in quinolone resistance. May constitute a membrane-associated active efflux pump of hydrophilic quinolones. Staphylococcus aureus (strain COL) (taxid: 93062) |
| >sp|Q6GBD5|NORA_STAAS Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MSSA476) GN=norA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 19/188 (10%)
Query: 24 MLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83
+LP K++G + LG L ++ Q P L+ + +I +G L++
Sbjct: 25 VLPVYLKDLG----LTGSDLGLLVAAFALSQMIISPFGGTLADKLGKKLIICIGLILFSV 80
Query: 84 ATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGS 143
+ F+ A F + +SR + G+ +V+P + L+AD + + FG++ G
Sbjct: 81 SEFMFAVGHNFSVLMLSRVIGGMSAGMVMPGVTGLIADISPSHQKAKNFGYMSAIINSGF 140
Query: 144 VLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDG------- 196
+LG +A S R+ F+ G + ++ ++ V +DP+ G
Sbjct: 141 ILGPGIGGFMAEVS------HRMPFYFAGALGILAFIMSIVLIHDPKKSTTSGFQKLEPQ 194
Query: 197 --TKIDHK 202
TKI+ K
Sbjct: 195 LLTKINWK 202
|
Involved in quinolone resistance. May constitute a membrane-associated active efflux pump of hydrophilic quinolones. Staphylococcus aureus (strain MSSA476) (taxid: 282459) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 502 | ||||||
| 449451621 | 520 | PREDICTED: protein spinster-like [Cucumi | 0.996 | 0.961 | 0.690 | 0.0 | |
| 225439014 | 526 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.954 | 0.710 | 0.0 | |
| 296090607 | 521 | unnamed protein product [Vitis vinifera] | 1.0 | 0.963 | 0.710 | 0.0 | |
| 224099933 | 520 | predicted protein [Populus trichocarpa] | 0.964 | 0.930 | 0.725 | 0.0 | |
| 224096193 | 520 | predicted protein [Populus trichocarpa] | 0.964 | 0.930 | 0.721 | 0.0 | |
| 255545694 | 526 | carbohydrate transporter, putative [Rici | 0.976 | 0.931 | 0.683 | 0.0 | |
| 449502871 | 521 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.920 | 0.886 | 0.724 | 0.0 | |
| 449437244 | 521 | PREDICTED: uncharacterized protein LOC10 | 0.920 | 0.886 | 0.724 | 0.0 | |
| 356528477 | 512 | PREDICTED: uncharacterized protein LOC10 | 0.982 | 0.962 | 0.690 | 0.0 | |
| 356552876 | 503 | PREDICTED: protein spinster-like [Glycin | 0.952 | 0.950 | 0.672 | 0.0 |
| >gi|449451621|ref|XP_004143560.1| PREDICTED: protein spinster-like [Cucumis sativus] gi|449496531|ref|XP_004160158.1| PREDICTED: protein spinster-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/514 (69%), Positives = 424/514 (82%), Gaps = 14/514 (2%)
Query: 1 MKSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPL 60
MKSET+TL+LVN AAIMER DES+LPGVYKEVGAALH DPTGLGSLTLFRS+VQS CYPL
Sbjct: 1 MKSETVTLILVNLAAIMERTDESLLPGVYKEVGAALHIDPTGLGSLTLFRSVVQSSCYPL 60
Query: 61 AAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVA 120
AAYL+ HHNRAHVIA+GAFLWAAATFLVA SSTFFQVA+SRGLNGIGLAIVIPAIQSLVA
Sbjct: 61 AAYLAVHHNRAHVIAVGAFLWAAATFLVALSSTFFQVAISRGLNGIGLAIVIPAIQSLVA 120
Query: 121 DSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGV 180
DSTD++NRG+AFGWLQLTG LGS++GG CS+L+ASTSFMGIPGWR+AFHLVGLISVIVG+
Sbjct: 121 DSTDDSNRGLAFGWLQLTGNLGSIIGGLCSILMASTSFMGIPGWRIAFHLVGLISVIVGL 180
Query: 181 LVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFS 240
LV V+ANDP +G DH PR+PFW+++ DL+ ++K VI I +FQIIV+QGV GSF
Sbjct: 181 LVWVFANDPHFSEINGRDKDH-PRKPFWSEMMDLVKESKSVIGIQSFQIIVSQGVAGSFP 239
Query: 241 GSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQ 300
SA +FA MWLEL+GFSH+ T FL TLF+IA LGG+FGG++GDIL++R P+SGR++LSQ
Sbjct: 240 WSALSFAPMWLELVGFSHEKTGFLWTLFIIASSLGGIFGGRLGDILSKRFPNSGRIVLSQ 299
Query: 301 ISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRT 360
IS+AS +P AA+LLLVLPD+PST FLHGL LFIMG MSWNAPATNNPIFAEIVP++ RT
Sbjct: 300 ISSASAVPLAAILLLVLPDNPSTTFLHGLVLFIMGFSMSWNAPATNNPIFAEIVPKKSRT 359
Query: 361 SIYALDQSFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAIYA 420
SIYALD+SFESI SSFAP VVGILAQHVYGYKP + +++S +IETDRENA SLA+A+YA
Sbjct: 360 SIYALDRSFESILSSFAPPVVGILAQHVYGYKPAAKGSTDSSQIETDRENAKSLARALYA 419
Query: 421 AMSIPMAICCIIYSFLYCSYPNDRGQATTDALRESEMQKLVADS---IEKCCHVHVLE-- 475
A+ PM++CC IYSFLYCSYP DR +A AL ESEM L + + E+ H+ E
Sbjct: 420 AIGFPMSLCCFIYSFLYCSYPRDRERARMHALIESEMLHLESSTSPLYEQDSQFHISEAK 479
Query: 476 -------VEMNAKEEKGDTIDREHEGEQKSLLSH 502
E++ E D++D + ++K LL+H
Sbjct: 480 DFDDKDQTEVDLTYEIEDSLDFI-DSDEKQLLNH 512
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225439014|ref|XP_002262789.1| PREDICTED: uncharacterized protein LOC100241664 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/512 (71%), Positives = 427/512 (83%), Gaps = 10/512 (1%)
Query: 1 MKSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPL 60
M+SETLTL+LVN A IMERADES+LPGVYKEVGAALHTDPTGLGSLTLFRSIVQS CYPL
Sbjct: 6 MQSETLTLILVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSSCYPL 65
Query: 61 AAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVA 120
AAYL+ HHNRAHVIALGAFLWAAATFLVA SSTFFQVAVSRGLNGIGLAIV PAIQSL+A
Sbjct: 66 AAYLATHHNRAHVIALGAFLWAAATFLVAISSTFFQVAVSRGLNGIGLAIVTPAIQSLIA 125
Query: 121 DSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGV 180
DST++ NRG+AFGWLQLTG LGS++GG CSVLIASTSFMGIPGWR+AFHLVG+ISVIVG+
Sbjct: 126 DSTEDHNRGVAFGWLQLTGNLGSIIGGLCSVLIASTSFMGIPGWRVAFHLVGVISVIVGI 185
Query: 181 LVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFS 240
LV ++A DP + D P +PFW+++KDL+ +AK VI+IP+FQIIVAQGV GSF
Sbjct: 186 LVRLFATDPHFSDGNNLAKDKIPSKPFWSEVKDLVKEAKSVIRIPSFQIIVAQGVSGSFP 245
Query: 241 GSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQ 300
SA +FA MWLELIGFSHK TAFLMTLFVI+ +GGLFGGKMGD+LA+RLP+SGR+ILSQ
Sbjct: 246 WSALSFAPMWLELIGFSHKKTAFLMTLFVISGSIGGLFGGKMGDVLAKRLPNSGRIILSQ 305
Query: 301 ISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRT 360
IS+AS +P A VLLL+LPDDPSTAF+HGL LFIMGLC+SWN ATNNPIFAEIVPE+ RT
Sbjct: 306 ISSASGVPLATVLLLLLPDDPSTAFMHGLVLFIMGLCISWNPAATNNPIFAEIVPEKSRT 365
Query: 361 SIYALDQSFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAIYA 420
S+YALD+SFESI +SFAP VVGIL+Q VYGYKPIP+ +++S +IETDRENAASLAKA+Y
Sbjct: 366 SVYALDRSFESILASFAPPVVGILSQRVYGYKPIPEGSTDSAQIETDRENAASLAKALYT 425
Query: 421 AMSIPMAICCIIYSFLYCSYPNDRGQATTDALRESEMQKLVADSI---EKCCHVHVLEV- 476
A+SIP +CC+IYSFLY +YP DR +A AL +SEMQ++ D + E+ +H E
Sbjct: 426 AISIPFVVCCLIYSFLYRTYPRDRERARMQALIDSEMQQMDRDELPSGEEYSQLHFSETK 485
Query: 477 EMNAKE------EKGDTIDREHEGEQKSLLSH 502
E N KE E GD + ++K+LL +
Sbjct: 486 EPNDKERSVIEIEYGDENLDVDDNDKKTLLPN 517
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090607|emb|CBI40991.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/512 (71%), Positives = 427/512 (83%), Gaps = 10/512 (1%)
Query: 1 MKSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPL 60
M+SETLTL+LVN A IMERADES+LPGVYKEVGAALHTDPTGLGSLTLFRSIVQS CYPL
Sbjct: 1 MQSETLTLILVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSSCYPL 60
Query: 61 AAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVA 120
AAYL+ HHNRAHVIALGAFLWAAATFLVA SSTFFQVAVSRGLNGIGLAIV PAIQSL+A
Sbjct: 61 AAYLATHHNRAHVIALGAFLWAAATFLVAISSTFFQVAVSRGLNGIGLAIVTPAIQSLIA 120
Query: 121 DSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGV 180
DST++ NRG+AFGWLQLTG LGS++GG CSVLIASTSFMGIPGWR+AFHLVG+ISVIVG+
Sbjct: 121 DSTEDHNRGVAFGWLQLTGNLGSIIGGLCSVLIASTSFMGIPGWRVAFHLVGVISVIVGI 180
Query: 181 LVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFS 240
LV ++A DP + D P +PFW+++KDL+ +AK VI+IP+FQIIVAQGV GSF
Sbjct: 181 LVRLFATDPHFSDGNNLAKDKIPSKPFWSEVKDLVKEAKSVIRIPSFQIIVAQGVSGSFP 240
Query: 241 GSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQ 300
SA +FA MWLELIGFSHK TAFLMTLFVI+ +GGLFGGKMGD+LA+RLP+SGR+ILSQ
Sbjct: 241 WSALSFAPMWLELIGFSHKKTAFLMTLFVISGSIGGLFGGKMGDVLAKRLPNSGRIILSQ 300
Query: 301 ISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRT 360
IS+AS +P A VLLL+LPDDPSTAF+HGL LFIMGLC+SWN ATNNPIFAEIVPE+ RT
Sbjct: 301 ISSASGVPLATVLLLLLPDDPSTAFMHGLVLFIMGLCISWNPAATNNPIFAEIVPEKSRT 360
Query: 361 SIYALDQSFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAIYA 420
S+YALD+SFESI +SFAP VVGIL+Q VYGYKPIP+ +++S +IETDRENAASLAKA+Y
Sbjct: 361 SVYALDRSFESILASFAPPVVGILSQRVYGYKPIPEGSTDSAQIETDRENAASLAKALYT 420
Query: 421 AMSIPMAICCIIYSFLYCSYPNDRGQATTDALRESEMQKLVADSI---EKCCHVHVLEV- 476
A+SIP +CC+IYSFLY +YP DR +A AL +SEMQ++ D + E+ +H E
Sbjct: 421 AISIPFVVCCLIYSFLYRTYPRDRERARMQALIDSEMQQMDRDELPSGEEYSQLHFSETK 480
Query: 477 EMNAKE------EKGDTIDREHEGEQKSLLSH 502
E N KE E GD + ++K+LL +
Sbjct: 481 EPNDKERSVIEIEYGDENLDVDDNDKKTLLPN 512
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099933|ref|XP_002334427.1| predicted protein [Populus trichocarpa] gi|222872190|gb|EEF09321.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/489 (72%), Positives = 407/489 (83%), Gaps = 5/489 (1%)
Query: 1 MKSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPL 60
MK ETLTLVLVN A IMERADES+LPGVYKEVGAALHTDPTGLGSLTLFRSIVQS CYPL
Sbjct: 1 MKQETLTLVLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSSCYPL 60
Query: 61 AAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVA 120
AAYL+ HHNRAHVIALGAFLWAAATFLVA SSTF +VAVSRGLNGIGLAIV PAIQSLVA
Sbjct: 61 AAYLAVHHNRAHVIALGAFLWAAATFLVAISSTFLEVAVSRGLNGIGLAIVTPAIQSLVA 120
Query: 121 DSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGV 180
DSTDE+NRGMAFGWLQLTG LGS++GG CSVLIAS +FMGIPGWR+AFHLVG+ISVIVG+
Sbjct: 121 DSTDESNRGMAFGWLQLTGNLGSIIGGLCSVLIASRTFMGIPGWRVAFHLVGIISVIVGI 180
Query: 181 LVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFS 240
+V ++ANDPR + D P+ F +++K L+ +AK VIKIP+FQIIVAQGV GSF
Sbjct: 181 MVRLFANDPRFSDTNSKAKDQSPKS-FISEVKYLMKEAKSVIKIPSFQIIVAQGVSGSFP 239
Query: 241 GSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQ 300
SA +FA MWLELIGFSH+ TAFLMTLFV+A LGGLFGGKMGD+LA+R P+SGR+ LSQ
Sbjct: 240 WSALSFAPMWLELIGFSHEKTAFLMTLFVVAGSLGGLFGGKMGDVLAKRFPNSGRIFLSQ 299
Query: 301 ISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRT 360
IS+ S IP AAVLLLVLPDDPST F+HGL LFIMG C+SWN PATNNPIFAEIVP++ R
Sbjct: 300 ISSGSAIPLAAVLLLVLPDDPSTTFIHGLVLFIMGFCISWNGPATNNPIFAEIVPQKSRA 359
Query: 361 SIYALDQSFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAIYA 420
S+YALD+SFES+ SSFAP VGILAQHVYGYK P+ + +SV++ TDRENAASLAKA+Y
Sbjct: 360 SVYALDRSFESVLSSFAPPTVGILAQHVYGYK-TPKKSLDSVQVITDRENAASLAKALYT 418
Query: 421 AMSIPMAICCIIYSFLYCSYPNDRGQATTDALRESEMQKLVADSI---EKCCHVHVLEVE 477
A+ IPMA+CC IYSFLYC+YP DR +A AL E EMQ+L AD E+ ++V E
Sbjct: 419 AIGIPMALCCFIYSFLYCTYPRDRDRARMTALIELEMQQLEADDSPLREEHTRLNVSETN 478
Query: 478 MNAKEEKGD 486
EE+ +
Sbjct: 479 GLDGEERTE 487
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096193|ref|XP_002310569.1| predicted protein [Populus trichocarpa] gi|222853472|gb|EEE91019.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/489 (72%), Positives = 407/489 (83%), Gaps = 5/489 (1%)
Query: 1 MKSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPL 60
MK E LTLVLVNFA IM+RADES+LPGVYKEVGAALHTDPTGLGSLTLFRS+VQS CYPL
Sbjct: 1 MKQEALTLVLVNFAGIMQRADESLLPGVYKEVGAALHTDPTGLGSLTLFRSVVQSSCYPL 60
Query: 61 AAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVA 120
AAYL+ HHNRAHVIALGAFLWAAATFLVA SSTF +VAVSRGLNGIGLAIV PAIQSLVA
Sbjct: 61 AAYLAVHHNRAHVIALGAFLWAAATFLVAISSTFLEVAVSRGLNGIGLAIVTPAIQSLVA 120
Query: 121 DSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGV 180
DSTDE+NRGMAFGWLQLTG LGS++GG CSVLIAS +FMGIPGWR+AFHLVG+ISVIVG+
Sbjct: 121 DSTDESNRGMAFGWLQLTGNLGSIIGGLCSVLIASRTFMGIPGWRVAFHLVGIISVIVGI 180
Query: 181 LVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFS 240
+V ++ANDPR + D P+ F +++K L+ +AK VIKIP+FQIIVAQGV GSF
Sbjct: 181 MVRLFANDPRFSDTNSKAKDQSPKS-FISEVKYLMKEAKSVIKIPSFQIIVAQGVSGSFP 239
Query: 241 GSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQ 300
SA +FA MWLELIGFSH+ TAFLMTLFV+A LGGLFGGKMGD+LA+R P+SGR+ LSQ
Sbjct: 240 WSALSFAPMWLELIGFSHEKTAFLMTLFVVAGSLGGLFGGKMGDVLAKRFPNSGRIFLSQ 299
Query: 301 ISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRT 360
IS+ S IP AAVLLLVLPDDPST F+HGL LFIMG C+SWN PATNNPIFAEIVP++ R
Sbjct: 300 ISSGSAIPLAAVLLLVLPDDPSTTFIHGLVLFIMGFCISWNGPATNNPIFAEIVPQKSRA 359
Query: 361 SIYALDQSFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAIYA 420
S+YALD+SFES+ SSFAP VGILAQHVYGYK P+ + +SV++ TDRENAASLAKA+Y
Sbjct: 360 SVYALDRSFESVLSSFAPPTVGILAQHVYGYK-TPKKSLDSVQVITDRENAASLAKALYT 418
Query: 421 AMSIPMAICCIIYSFLYCSYPNDRGQATTDALRESEMQKLVADSI---EKCCHVHVLEVE 477
A+ IPMA+CC IYSFLYC+YP DR +A AL E EMQ+L AD E+ ++V E
Sbjct: 419 AIGIPMALCCFIYSFLYCTYPRDRDRARMTALIELEMQQLEADDSPLREEHTRLNVSETN 478
Query: 478 MNAKEEKGD 486
EE+ +
Sbjct: 479 GLDGEERTE 487
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255545694|ref|XP_002513907.1| carbohydrate transporter, putative [Ricinus communis] gi|223546993|gb|EEF48490.1| carbohydrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/499 (68%), Positives = 406/499 (81%), Gaps = 9/499 (1%)
Query: 1 MKSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPL 60
MK ETLTL+LVN A IMERADES+LPGVYKEVGAALHTDPTGLGSLTLFRSIVQS CYPL
Sbjct: 1 MKQETLTLLLVNLAGIMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSSCYPL 60
Query: 61 AAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVA 120
AAYL+ HNRAHVIA GA LWAAATFLVAFSST+F+VAVSR LNGIGLAIV PAIQSLVA
Sbjct: 61 AAYLAVKHNRAHVIAFGALLWAAATFLVAFSSTYFEVAVSRALNGIGLAIVAPAIQSLVA 120
Query: 121 DSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGV 180
DSTD++NRG AFGWLQLT +GS++GG CSVLIA +FMGIPGWRL+FHLVG+ISV+VGV
Sbjct: 121 DSTDDSNRGTAFGWLQLTANIGSIVGGLCSVLIAPITFMGIPGWRLSFHLVGIISVMVGV 180
Query: 181 LVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFS 240
LV+++ANDP + + F++++KDL+ +AK VIKIP+FQIIVAQG+ GSF
Sbjct: 181 LVYLFANDPHFSDASMKNRNQDVSKSFFSEVKDLVREAKSVIKIPSFQIIVAQGITGSFP 240
Query: 241 GSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQ 300
SA F+AMWLELIGFSH+ TA L+ LFVIA GGLFGGKMGDIL+ R P++GR+IL+Q
Sbjct: 241 WSALTFSAMWLELIGFSHEKTALLIALFVIAGSFGGLFGGKMGDILSTRFPNAGRIILAQ 300
Query: 301 ISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRT 360
IS+AS IP AA+LLL LPDDPSTAF+HGL L +MGL ++WNAPATNNPIFAEIVPE+ RT
Sbjct: 301 ISSASAIPLAAILLLGLPDDPSTAFMHGLVLVVMGLFITWNAPATNNPIFAEIVPEKSRT 360
Query: 361 SIYALDQSFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAIYA 420
S+YALD+SFESI SSFAP +VG+LAQ+VYGYKP+P+ +S S EI TDR NAASLAKA+Y
Sbjct: 361 SVYALDRSFESILSSFAPPIVGLLAQYVYGYKPLPKGSSESEEIATDRRNAASLAKALYT 420
Query: 421 AMSIPMAICCIIYSFLYCSYPNDRGQATTDALRESEMQKLVAD---SIEKCCHVHVLEVE 477
A+ IPMA+CC IYSFLY +YP DR +A +AL E EM++L+ D + C V ++E
Sbjct: 421 AIGIPMALCCFIYSFLYRTYPRDRERAHMEALIELEMEQLILDDSPTSRGNCQVELVEA- 479
Query: 478 MNAKEEKGDTIDREHEGEQ 496
E+ I+ +EGE
Sbjct: 480 -----EEASVIEMVYEGED 493
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449502871|ref|XP_004161766.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101220496 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/465 (72%), Positives = 394/465 (84%), Gaps = 3/465 (0%)
Query: 1 MKSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPL 60
MK ET+TL+LVN A +MERADES+LPGVYKEVGAALHTDPTGLGSLTLFRSIVQ+ CYPL
Sbjct: 1 MKPETVTLILVNLAGVMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQAACYPL 60
Query: 61 AAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVA 120
AAYL+ HNRAHVIALGAFLWA+ATFLVAFSSTF QVA+SRGLNGIGLA+V PAIQSLVA
Sbjct: 61 AAYLAVRHNRAHVIALGAFLWASATFLVAFSSTFLQVAISRGLNGIGLALVAPAIQSLVA 120
Query: 121 DSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGV 180
DSTD++NRG+AFGWLQ TG LGS++GG CS++IA +FMGIPGWR+AFHLVGLISVIVG+
Sbjct: 121 DSTDDSNRGLAFGWLQTTGNLGSIIGGLCSIVIAPITFMGIPGWRIAFHLVGLISVIVGI 180
Query: 181 LVHVYANDPRCLAKDGTKI--DHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGS 238
LV ++A DP L DG KI D P+ FW+++K L +AK V+KIP+FQIIVAQGV GS
Sbjct: 181 LVRLFAQDPHFL-DDGIKIGNDVPPQSSFWSEVKVLAREAKSVMKIPSFQIIVAQGVTGS 239
Query: 239 FSGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVIL 298
F SA +FA MWLEL GFSH+ TAFLM +FVI LGGLFGGKMGDIL+ R P+SGR+IL
Sbjct: 240 FPWSALSFATMWLELKGFSHQKTAFLMGMFVIGNSLGGLFGGKMGDILSTRFPNSGRIIL 299
Query: 299 SQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERC 358
+QIS+ S IP AAVLLL LPD PSTA +HGL L I G+ +SWNAPATNNPIFAEIVPE+
Sbjct: 300 AQISSGSGIPLAAVLLLFLPDGPSTAVIHGLVLIIXGVFISWNAPATNNPIFAEIVPEKS 359
Query: 359 RTSIYALDQSFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAI 418
RTS+YALD+SFESI SSFAP VVGILAQHVYGYKP+ + +S S EI TDRENAASLA+A+
Sbjct: 360 RTSVYALDRSFESILSSFAPPVVGILAQHVYGYKPVQKGSSESEEIATDRENAASLARAL 419
Query: 419 YAAMSIPMAICCIIYSFLYCSYPNDRGQATTDALRESEMQKLVAD 463
Y A+ IP+A+CC IYSFLYC+YP DR +A + L ESEMQ++ ++
Sbjct: 420 YTAIGIPLALCCFIYSFLYCTYPRDRERARMEVLIESEMQQIESE 464
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437244|ref|XP_004136402.1| PREDICTED: uncharacterized protein LOC101220496 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/465 (72%), Positives = 394/465 (84%), Gaps = 3/465 (0%)
Query: 1 MKSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPL 60
MK ET+TL+LVN A +MERADES+LPGVYKEVGAALHTDPTGLGSLTLFRSIVQ+ CYPL
Sbjct: 1 MKPETVTLILVNLAGVMERADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQAACYPL 60
Query: 61 AAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVA 120
AAYL+ HNRAHVIALGAFLWA+ATFLVAFSSTF QVA+SRGLNGIGLA+V PAIQSLVA
Sbjct: 61 AAYLAVRHNRAHVIALGAFLWASATFLVAFSSTFLQVAISRGLNGIGLALVAPAIQSLVA 120
Query: 121 DSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGV 180
DSTD++NRG+AFGWLQ TG LGS++GG CS++IA +FMGIPGWR+AFHLVGLISVIVG+
Sbjct: 121 DSTDDSNRGLAFGWLQTTGNLGSIIGGLCSIVIAPITFMGIPGWRIAFHLVGLISVIVGI 180
Query: 181 LVHVYANDPRCLAKDGTKI--DHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGS 238
LV ++A DP L DG KI D P+ FW+++K L +AK V+KIP+FQIIVAQGV GS
Sbjct: 181 LVRLFAQDPHFL-DDGIKIGNDVPPQSSFWSEVKVLAREAKSVMKIPSFQIIVAQGVTGS 239
Query: 239 FSGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVIL 298
F SA +FA MWLEL GFSH+ TAFLM +FVI LGGLFGGKMGDIL+ R P+SGR+IL
Sbjct: 240 FPWSALSFATMWLELKGFSHQKTAFLMGMFVIGNSLGGLFGGKMGDILSTRFPNSGRIIL 299
Query: 299 SQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERC 358
+QIS+ S IP AAVLLL LPD PSTA +HGL L I+G +SWNAPATNNPIFAEIVPE+
Sbjct: 300 AQISSGSGIPLAAVLLLFLPDGPSTAVIHGLVLIIVGFFISWNAPATNNPIFAEIVPEKS 359
Query: 359 RTSIYALDQSFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAI 418
RTS+YALD+SFESI SSFAP VVGILAQHVYGYKP+ + +S S EI TDRENAASLA+A+
Sbjct: 360 RTSVYALDRSFESILSSFAPPVVGILAQHVYGYKPVQKGSSESEEIATDRENAASLARAL 419
Query: 419 YAAMSIPMAICCIIYSFLYCSYPNDRGQATTDALRESEMQKLVAD 463
Y A+ IP+A+CC IYSFLYC+YP DR +A + L ESEMQ++ ++
Sbjct: 420 YTAIGIPLALCCFIYSFLYCTYPRDRERARMEVLIESEMQQIESE 464
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528477|ref|XP_003532829.1| PREDICTED: uncharacterized protein LOC100787140 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/497 (69%), Positives = 398/497 (80%), Gaps = 4/497 (0%)
Query: 1 MKSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPL 60
MKSETL LVLVN A+IM+RADES+LPGVYKEVG L DPT LGSLTLFRS+VQS CYPL
Sbjct: 1 MKSETLNLVLVNLASIMQRADESLLPGVYKEVGEDLKADPTALGSLTLFRSLVQSLCYPL 60
Query: 61 AAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVA 120
AAYL+ HNRAHVIALGAFLWAAATFLVA SSTF QVA+SRGLNGIGLAIVIPAIQSLVA
Sbjct: 61 AAYLATRHNRAHVIALGAFLWAAATFLVAISSTFLQVAISRGLNGIGLAIVIPAIQSLVA 120
Query: 121 DSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGV 180
DST ++NRGMAFGWLQLTG LGS++GG SVLIAST+ GIPGWR+AFHLV LISVIVG+
Sbjct: 121 DSTVDSNRGMAFGWLQLTGNLGSIIGGLFSVLIASTTVAGIPGWRIAFHLVALISVIVGI 180
Query: 181 LVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFS 240
LV ++ANDP D T + + F++++KDL+ +AK VI+IPTFQIIVAQGVFGSF
Sbjct: 181 LVRLFANDPHYSKSDDTATNQAQNKSFYSEMKDLMKEAKSVIRIPTFQIIVAQGVFGSFP 240
Query: 241 GSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQ 300
S +FA +WLELIGFSH TA L TLF++A G LFGG MGD L+ RLP++GR+ILSQ
Sbjct: 241 WSGLSFATLWLELIGFSHVTTATLWTLFIVAASFGSLFGGWMGDFLSLRLPNAGRIILSQ 300
Query: 301 ISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRT 360
ISA SVIP AA+LLL LPDD STAF+HGL L IMG +WNAPATNNPIFAEIVPE+ RT
Sbjct: 301 ISAGSVIPLAAILLLGLPDDSSTAFMHGLVLVIMGFTSAWNAPATNNPIFAEIVPEKSRT 360
Query: 361 SIYALDQSFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAIYA 420
+IYALD SFESI +SFAP +VG+LAQHVYGY+PIP +S+SVEIETDRENAASLAKA+Y
Sbjct: 361 AIYALDCSFESILASFAPPIVGLLAQHVYGYRPIPSGSSDSVEIETDRENAASLAKALYT 420
Query: 421 AMSIPMAICCIIYSFLYCSYPNDRGQATTDALRESEMQKLVAD--SIEKCCHVH-VLEVE 477
A+ IPM IC +YS LYC+YP DR +A +L ESEMQ+L + + E+ C +H LE
Sbjct: 421 AIIIPMTICVSVYSLLYCTYPRDRERARMISLAESEMQQLEVEDGTKEEYCEIHEYLESN 480
Query: 478 -MNAKEEKGDTIDREHE 493
+N KE ID E
Sbjct: 481 VVNDKESSKFDIDYPRE 497
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552876|ref|XP_003544788.1| PREDICTED: protein spinster-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/501 (67%), Positives = 402/501 (80%), Gaps = 23/501 (4%)
Query: 1 MKSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPL 60
MK+ET+TL+LVN A IMERADES+LPGVYKEVG ALHTDPTGLG LTLFRSIVQS CYP+
Sbjct: 1 MKAETVTLLLVNLAGIMERADESLLPGVYKEVGTALHTDPTGLGYLTLFRSIVQSSCYPV 60
Query: 61 AAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVA 120
AAYL+ HNRAHVIA+GAFLWAAATFLVAFSSTFFQVA+SR NGIGLA+V PAIQSLVA
Sbjct: 61 AAYLAVRHNRAHVIAVGAFLWAAATFLVAFSSTFFQVALSRAFNGIGLALVTPAIQSLVA 120
Query: 121 DSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGV 180
DSTD++NRGMAFGWLQLTG +GS++GG SVLIA + GIPGWR++FH+VGLIS+IVG
Sbjct: 121 DSTDDSNRGMAFGWLQLTGNVGSIIGGLFSVLIAPITVFGIPGWRISFHIVGLISIIVGA 180
Query: 181 LVHVYANDPRCLAKDGTKIDHK-PRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF 239
LV+++ANDP + +GT + P + FW+++KDL+ ++K V+KI +FQIIVAQGV GSF
Sbjct: 181 LVYLFANDPH-FSDNGTNSRRQAPNKTFWSEVKDLVQESKSVLKISSFQIIVAQGVTGSF 239
Query: 240 SGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILS 299
SA +FA MWLEL GFSH+ TAFLM LFV+A +GGLFGGKMGDIL++R P+SGR+IL+
Sbjct: 240 PWSALSFAPMWLELTGFSHEKTAFLMGLFVVASSIGGLFGGKMGDILSKRYPNSGRIILA 299
Query: 300 QISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCR 359
QIS+ S IP AA+LL+ LPDDPST HGL L IMGL +SWN PATNNPIFAEIVPER R
Sbjct: 300 QISSGSAIPLAALLLIGLPDDPSTIISHGLVLIIMGLLISWNGPATNNPIFAEIVPERSR 359
Query: 360 TSIYALDQSFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAIY 419
TS+YA+D+SFESI SSFAP VGILAQHVYGYKPIP+ +S S EI TDRENAASLAK++Y
Sbjct: 360 TSVYAMDRSFESILSSFAPPAVGILAQHVYGYKPIPEGSSESQEILTDRENAASLAKSLY 419
Query: 420 AAMSIPMAICCIIYSFLYCSYPNDRGQATTDALRESEMQKLVADSIEKCCHVHVLEVEMN 479
A+ IPMA+CCIIY+FLY +YP DR +A +AL ESEMQ +
Sbjct: 420 TAIGIPMALCCIIYTFLYRTYPRDRERAKMEALIESEMQLI------------------- 460
Query: 480 AKEEKGDTIDREHEGEQKSLL 500
E G +DRE E E+ S++
Sbjct: 461 --ESGGLAMDREFESEELSIV 479
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 502 | ||||||
| TAIR|locus:2194749 | 490 | UNE2 "AT1G78130" [Arabidopsis | 0.922 | 0.944 | 0.688 | 4.1e-168 | |
| TAIR|locus:2184163 | 488 | AT5G10190 "AT5G10190" [Arabido | 0.928 | 0.954 | 0.673 | 5.5e-164 | |
| TAIR|locus:2115430 | 489 | AT4G36790 "AT4G36790" [Arabido | 0.888 | 0.912 | 0.409 | 1.1e-85 | |
| TAIR|locus:2046313 | 473 | AT2G18590 "AT2G18590" [Arabido | 0.892 | 0.947 | 0.332 | 7.2e-68 | |
| WB|WBGene00013739 | 518 | Y111B2A.19 [Caenorhabditis ele | 0.723 | 0.700 | 0.221 | 6.7e-08 | |
| WB|WBGene00008598 | 483 | F09A5.1 [Caenorhabditis elegan | 0.856 | 0.890 | 0.211 | 5.9e-07 | |
| GENEDB_PFALCIPARUM|PF14_0260 | 809 | PF14_0260 "metabolite/drug tra | 0.442 | 0.274 | 0.210 | 1.1e-06 | |
| UNIPROTKB|Q8ILI3 | 809 | PF14_0260 "Metabolite/drug tra | 0.442 | 0.274 | 0.210 | 1.1e-06 | |
| TIGR_CMR|BA_4961 | 478 | BA_4961 "drug resistance trans | 0.179 | 0.188 | 0.273 | 1.5e-06 | |
| UNIPROTKB|F1ME77 | 535 | SPNS3 "Uncharacterized protein | 0.366 | 0.343 | 0.252 | 3.3e-06 |
| TAIR|locus:2194749 UNE2 "AT1G78130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1635 (580.6 bits), Expect = 4.1e-168, P = 4.1e-168
Identities = 321/466 (68%), Positives = 373/466 (80%)
Query: 1 MKSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPL 60
MK+ET+TL+LVN A IMERADES+LPGVYKEVG ALHTDPTGLGSLTL RS+VQ+ CYPL
Sbjct: 1 MKAETMTLLLVNLAGIMERADESLLPGVYKEVGLALHTDPTGLGSLTLLRSMVQAACYPL 60
Query: 61 AAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVA 120
AAY++ HNRAHVIALGAFLW+AATFLVAFSSTFFQVAVSR LNGIGLA+V PAIQSLVA
Sbjct: 61 AAYMAIRHNRAHVIALGAFLWSAATFLVAFSSTFFQVAVSRALNGIGLALVAPAIQSLVA 120
Query: 121 DSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFXXXXXXXXXXXX 180
DSTD+ NRG AFGWLQLT +GS+LGG CSVLIA +FMGIPGWR+AF
Sbjct: 121 DSTDDANRGTAFGWLQLTANIGSILGGLCSVLIAPLTFMGIPGWRVAFHIVGVISVIVGV 180
Query: 181 XXXXYANDPRCLAKDGTKIDHKP--RRPFWADIKDLITDAKMVIKIPTFQIIVAQGVXXX 238
+ANDP KDG + ++P R+PF ++KDL+ +A VIKI +FQIIVAQGV
Sbjct: 181 LVRVFANDPH-FVKDGVDVSNQPGSRKPFCTEVKDLVREADTVIKIRSFQIIVAQGVTGS 239
Query: 239 XXXXXXXXXXMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVIL 298
MWLELIGFSH TAFLM LFV A LGGLFGGKMGD L+ RLP+SGR+IL
Sbjct: 240 FPWSALSFAPMWLELIGFSHGKTAFLMGLFVAASSLGGLFGGKMGDFLSTRLPNSGRIIL 299
Query: 299 SQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERC 358
+QIS+AS IP AA+LLLVLPDDPSTA +HGL L ++GL +SWNAPATNNPIFAEIVPE+
Sbjct: 300 AQISSASAIPLAAILLLVLPDDPSTAAIHGLILVLLGLFVSWNAPATNNPIFAEIVPEKS 359
Query: 359 RTSIYALDQSFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAI 418
RTS+YALD+SFESI SSFAP +VGILAQHVYGYKPIP+ +S S EI TDRENAASLAKA+
Sbjct: 360 RTSVYALDKSFESILSSFAPPIVGILAQHVYGYKPIPEGSSRSTEIATDRENAASLAKAL 419
Query: 419 YAAMSIPMAICCIIYSFLYCSYPNDRGQATTDALRESEMQKLVADS 464
Y ++ +PMA CC IYSFLY SYP DR +A +A +SEM++L+ +S
Sbjct: 420 YTSIGLPMAACCFIYSFLYRSYPLDRDRARMEAFIDSEMRELLPES 465
|
|
| TAIR|locus:2184163 AT5G10190 "AT5G10190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1596 (566.9 bits), Expect = 5.5e-164, P = 5.5e-164
Identities = 317/471 (67%), Positives = 365/471 (77%)
Query: 1 MKSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPL 60
MKSETLTLVLV A IMERADES+LPGVYKEVG ALH DPT LG+LTLFRSIVQS CYPL
Sbjct: 1 MKSETLTLVLVYLAGIMERADESLLPGVYKEVGDALHVDPTALGTLTLFRSIVQSSCYPL 60
Query: 61 AAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVA 120
AAYLS+ HNRAHVIALGAFLWA ATFLVA S+TFFQVAVSRGLNGIGLAIV PAIQSLVA
Sbjct: 61 AAYLSSRHNRAHVIALGAFLWATATFLVAVSTTFFQVAVSRGLNGIGLAIVTPAIQSLVA 120
Query: 121 DSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFXXXXXXXXXXXX 180
DSTD+ NRGMAFGWL T +GS+LG CS+L AS SF G+ GWR+AF
Sbjct: 121 DSTDDYNRGMAFGWLGFTSNIGSILGYVCSILFASKSFNGVAGWRIAFLLVAVVSVIVGI 180
Query: 181 XXXXYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVXXXXX 240
+A DP + TK H +PFW+DI+DL+ +AKMVIKIP+FQI VAQGV
Sbjct: 181 LVRLFATDPHYSDRKITK--HVKDKPFWSDIRDLLKEAKMVIKIPSFQIFVAQGVSGSFP 238
Query: 241 XXXXXXXXMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQ 300
+WLELIGFSHK TA L+TLF I+ LGGLFGG MGD LA++ P+ GR+ LSQ
Sbjct: 239 WSALAFAPLWLELIGFSHKTTAVLVTLFTISCSLGGLFGGYMGDTLAKKFPNGGRIFLSQ 298
Query: 301 ISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRT 360
+S+ S IP AA+LL+ LPDDPSTAF HGL L IMGLC+SWN ATN PIFAEIVPER RT
Sbjct: 299 VSSGSAIPLAAILLIGLPDDPSTAFSHGLVLVIMGLCISWNGAATNGPIFAEIVPERART 358
Query: 361 SIYALDQSFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAIYA 420
SIYALD+SFESI +SFAP +VG+LAQ++YGYKPIP+ +++SV+I+TDR NAASLAKA+Y
Sbjct: 359 SIYALDRSFESILASFAPPIVGMLAQNIYGYKPIPEGSTSSVKIDTDRANAASLAKALYT 418
Query: 421 AMSIPMAICCIIYSFLYCSYPNDRGQATTDALRESEMQKL--VADSIE-KC 468
++ IPM ICC IYSFLYC+YP DR +A AL ESEMQ+L D IE KC
Sbjct: 419 SIGIPMVICCTIYSFLYCTYPRDRDRAKMQALIESEMQQLNEEEDEIEVKC 469
|
|
| TAIR|locus:2115430 AT4G36790 "AT4G36790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 186/454 (40%), Positives = 262/454 (57%)
Query: 5 TLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYL 64
+++L+L+N AAIMERADE++LP VYKEV A + P+ LG LT R+ VQ PLA L
Sbjct: 42 SISLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFVRNFVQGLASPLAGVL 101
Query: 65 SAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTD 124
++R V+A+G F WA +T V SS F QVA+ R +NG GLAIVIPA+QS +ADS
Sbjct: 102 VITYDRPIVLAIGTFCWALSTAAVGASSYFIQVALWRAVNGFGLAIVIPALQSFIADSYK 161
Query: 125 ETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFXXXXXXXXXXXXXXXX 184
+ RG FG L L G +G + GG + ++A + F GIPGWR AF
Sbjct: 162 DGARGAGFGMLNLIGTIGGIGGGVVATVMAGSEFWGIPGWRCAFIMMAALSAVIGLLVFL 221
Query: 185 YANDPRCLAKDGTKIDHKPR-RPFWADIKDLITDAKMVIKIPTFQIIVAQGVXXXXXXXX 243
+ DPR + + HK W D + AK V+K+ TFQIIVAQG+
Sbjct: 222 FVVDPRKNIEREELMAHKMNSNSVW---NDSLAAAKSVVKVSTFQIIVAQGIIGSFPWTA 278
Query: 244 XXXXXMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISA 303
MW ELIGF H TA L+ +F +G L GG + D +++ P+SGRV+ +Q SA
Sbjct: 279 MVFFTMWFELIGFDHNQTAALLGVFATGGAIGTLMGGIIADKMSRIYPNSGRVMCAQFSA 338
Query: 304 ASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIY 363
IP + +LL V+P S+ + + LF+MGL ++W A N P+FAE+VP R RT IY
Sbjct: 339 FMGIPFSIILLKVIPQSTSSYSIFSITLFLMGLTITWCGSAVNAPMFAEVVPPRHRTMIY 398
Query: 364 ALDQSFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAIYAAMS 423
A D++FE SSFA +VGIL++ ++GY D + RE A +L+K + + M+
Sbjct: 399 AFDRAFEGSFSSFAAPLVGILSEKLFGYDSRGIDPLKGSSV---RE-ADALSKGLLSMMA 454
Query: 424 IPMAICCIIYSFLYCSYPNDRGQATTDALRESEM 457
+P +CC+ Y+ L+ + DR A + +E+EM
Sbjct: 455 VPFGLCCLCYTPLHFVFQKDRENAKIASSKETEM 488
|
|
| TAIR|locus:2046313 AT2G18590 "AT2G18590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 155/466 (33%), Positives = 237/466 (50%)
Query: 5 TLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYL 64
+++L+++N A +M+RADE ++P KE+ A H + +G L+ R+IVQ PLA
Sbjct: 12 SISLIIINLATMMQRADEKLIPSTAKELKEAFHAKLSDIGLLSFIRNIVQGLASPLAGLF 71
Query: 65 SAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTD 124
+ ++R V A G+F W ++T S F QV + NG+G AIV P +QS++ADS
Sbjct: 72 AISYDRPTVFAFGSFFWVSSTVATGVSRYFIQVTLGVAFNGVGHAIVYPVLQSIIADSFK 131
Query: 125 ETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFXXXXXXXXXXXXXXXX 184
E++RG FG L G +G + G ++A F GI GWR AF
Sbjct: 132 ESSRGFGFGLWNLIGTVGGIGGTVVPTVMAGHDFFGISGWRCAFILSATLSTIVGILVFF 191
Query: 185 YANDPRCLAKDGTKIDHKPRR-------------PFWADIKDLITDAKMVIKIPTFQIIV 231
+ +DPR + H + P + K+ K V K+ TFQIIV
Sbjct: 192 FVSDPREKKTSSVIVHHDDQHERDENNGGTMMESPSSSVWKESWVAIKDVTKLRTFQIIV 251
Query: 232 AQGVXXXXXXXXXXXXXMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLP 291
QG+ MW ELIGF H A L +F +G L GG + D +++ P
Sbjct: 252 LQGIVGSVPWNAMLFWTMWFELIGFDHNQAALLNGIFATGQAIGSLVGGIIADKMSRVFP 311
Query: 292 DSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFA 351
+SGR+I +Q S + VLL ++P ++ ++ + LF+MGL ++W PA N+PI A
Sbjct: 312 NSGRLICAQFSVFMGAMFSIVLLRMIPQSVNSFYIFLVTLFLMGLTITWCGPAINSPILA 371
Query: 352 EIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENA 411
EIVP + RT +YA D++ E SSF +VGI+++ ++G+ DA + A
Sbjct: 372 EIVPAKHRTMVYAFDRALEVTFSSFGAPLVGIMSEKLFGF-----DAKGIDHVNDSGREA 426
Query: 412 ASLAKAIYAAMSIPMAICCIIYSFLYCSYPNDRGQATTDALRESEM 457
+L K I M++P +CC+ Y+ L+ + DR T + RE EM
Sbjct: 427 EALGKGIMWMMALPFGLCCLCYTPLHFLFRKDRKIDRTTSSREVEM 472
|
|
| WB|WBGene00013739 Y111B2A.19 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 155 (59.6 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 90/407 (22%), Positives = 151/407 (37%)
Query: 8 LVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAH 67
L+LVN M+R + GV + D G G L + F PL YL
Sbjct: 29 LLLVNLLNYMDRYT---IVGVMSRLATFFDIDDKGQGLLQTVFIVFYMFFAPLFGYLGDR 85
Query: 68 HNRAHVIALGAFLWAAATFLVAFSST--FFQVAVSRGLNGIGLAIVIPAIQSLVADSTDE 125
+NR ++ G +W A F +F ++ + RG+ GIG A ++++D
Sbjct: 86 YNRKMLMITGICIWILAVFASSFCGEGHYYLFLLCRGIVGIGEASYSTIAPTVLSDLFSG 145
Query: 126 TNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFXXXXXXXXXXXXXXXXY 185
R +GS LG F S S+ W+
Sbjct: 146 GLRSRVLMMFYFAIPVGSGLG-FIS---GSSISQATDSWQWGVRFSPIIGIACLGLMLWL 201
Query: 186 ANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVXXXXXXXXXX 245
++P A DG + + D DLI D K ++ I TF + A +
Sbjct: 202 LDEPVRGACDGARQN--------GDEADLIGDIKYLMSIKTFYLASAASIASFFSIGTMS 253
Query: 246 XXXMWL-ELIGFSH-------KLTAFLMT----LFVIAFCLGGLFGGKMGDILAQRLPDS 293
W + +GFS+ K+ +T +F I C+ GL G G IL++ D
Sbjct: 254 ---WWTPQYVGFSYAVIHNVPKVPETELTQINLIFGIITCMAGLLGVATGSILSRAWRDG 310
Query: 294 GRVILSQISA-ASVIPTAAVLLLVLPDDPSTAFL-----HG---LALF-IMGLCMSWNAP 343
+ + + A V A + + LP F+ +G L F IM +C++W+
Sbjct: 311 SSIFRNHATEKADVYICALSMFVALPFLFFAIFIAEYSTNGCLILIYFAIMSMCLNWSVN 370
Query: 344 ATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYG 390
+ + +V R T++ + +P ++G+L+ + G
Sbjct: 371 V--DVLMYVVVANRRATALAVQTMVAHLFGDAASPYIIGVLSDMLRG 415
|
|
| WB|WBGene00008598 F09A5.1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 146 (56.5 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 103/488 (21%), Positives = 188/488 (38%)
Query: 2 KSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLA 61
+ + +++V++ ++ D + GV +V + + + + G + I P+
Sbjct: 5 RKDYISIVILFVVNLINNVDRYTIAGVLPDVQSYYNINDSMGGMIQTVFLISFMIGSPIC 64
Query: 62 AYLSAHHNRAHVIALGAFLW----AAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQS 117
YL NR +V+ +G +W A+TF+ + F R L GIG A + +
Sbjct: 65 GYLGDRFNRKYVMLVGIVIWLICVCASTFIPR--NLFPLFLFFRSLVGIGEASYVNICPT 122
Query: 118 LVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFXXXXXXXXX 177
+++D R + L +GS LG S ++S + G W+
Sbjct: 123 MISDMFTSDKRTRVYMLFYLAVPVGSGLGYIISSNVSSLT--G--SWQWGVRVTGIGGIV 178
Query: 178 XXXXXXXYANDP-RCLAK--DGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQ-IIVAQ 233
++P R A+ +G +P +W D+K L+ V+ + +I
Sbjct: 179 ALLALLFMVHEPERGAAEKLEGKDTTVRPSTSYWKDLKVLLKCPTYVVTTLAYTALIFVS 238
Query: 234 GVXXXXXXXXXXXXXMWL-------EL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDI 285
G W EL + F ++ T + L A C G+ G +G++
Sbjct: 239 GTLTWWMPTIIEYSAAWTRGYKSIKELPLSFKNE-TGLIFGLLTTA-C--GIIGTLLGNL 294
Query: 286 LAQRL--------PDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGL--ALFIMG 335
LAQ + R L ++I T L++V S+ L + + I G
Sbjct: 295 LAQCFLYGWLGAWSKTKRAHLVAAGCGALISTPC-LVVVFVFGHSSELLTWIMVGVSITG 353
Query: 336 LCMSWNAPATNNPIFAEIV-PERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYKPI 394
LC +W+ N +F +IV PER T+ + + P ++G ++
Sbjct: 354 LCFNWSL---NVEVFNQIVAPERRSTAFSYVTLISHLCGDASGPYIIGAIS--------- 401
Query: 395 PQDASNSVEIETDRENAASLAKAIYAAMSIP--MAICCIIYSFLYCSYPNDRGQATTDAL 452
DA S +++ + SLA YA+M P M I ++Y + D + +
Sbjct: 402 --DAIKSNHLDSPEWDYKSLA---YASMLAPVMMGISTVLYFVAAIIFKRDARRLVREMT 456
Query: 453 R-ESEMQK 459
R ES+ Q+
Sbjct: 457 RNESDDQE 464
|
|
| GENEDB_PFALCIPARUM|PF14_0260 PF14_0260 "metabolite/drug transporter" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 124 (48.7 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 49/233 (21%), Positives = 100/233 (42%)
Query: 217 DAKMVIKIPTFQIIVAQGVXXXXXXXXXXXXXMWLELIGFSHKLTAFLMTLFVIAFCLGG 276
+ K V K +F +++ G+ + + S + F++++ + L
Sbjct: 577 EIKYVFKNYSFWLMITMGMLNGIPKHVLSLMIYFFQYCNISDFKSGFIISVSWLCASLIS 636
Query: 277 LFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFI-MG 335
F G + D + + D R + + I L +P + +T+F++ + + + MG
Sbjct: 637 PFIGIISDYIYKLNKDINRQRIGMYTHCFRIFLMFTLFYFIPKE-ATSFIYFVIISLFMG 695
Query: 336 LCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVG-ILAQHVYG-YKP 393
+ W T+ PI +IV +R I AL +FE+I SS ++G L H+ Y
Sbjct: 696 ILSGWINIGTHKPIIIDIVKQRHTAFIMALMNAFENIGSS----IIGTFLLSHLLNKYDY 751
Query: 394 IPQDASNSV-EIETDRENAASLAKAIYAAMSIPMAIC-CIIYSFLYCSYPNDR 444
I + ++V + ++ N L+ + P + C++Y+ Y +Y D+
Sbjct: 752 IDKKKIHTVVNVNVNKHNVNVLSDVLLMLTCFPWLLSFCLLYALKY-TYKKDK 803
|
|
| UNIPROTKB|Q8ILI3 PF14_0260 "Metabolite/drug transporter, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 124 (48.7 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 49/233 (21%), Positives = 100/233 (42%)
Query: 217 DAKMVIKIPTFQIIVAQGVXXXXXXXXXXXXXMWLELIGFSHKLTAFLMTLFVIAFCLGG 276
+ K V K +F +++ G+ + + S + F++++ + L
Sbjct: 577 EIKYVFKNYSFWLMITMGMLNGIPKHVLSLMIYFFQYCNISDFKSGFIISVSWLCASLIS 636
Query: 277 LFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFI-MG 335
F G + D + + D R + + I L +P + +T+F++ + + + MG
Sbjct: 637 PFIGIISDYIYKLNKDINRQRIGMYTHCFRIFLMFTLFYFIPKE-ATSFIYFVIISLFMG 695
Query: 336 LCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVG-ILAQHVYG-YKP 393
+ W T+ PI +IV +R I AL +FE+I SS ++G L H+ Y
Sbjct: 696 ILSGWINIGTHKPIIIDIVKQRHTAFIMALMNAFENIGSS----IIGTFLLSHLLNKYDY 751
Query: 394 IPQDASNSV-EIETDRENAASLAKAIYAAMSIPMAIC-CIIYSFLYCSYPNDR 444
I + ++V + ++ N L+ + P + C++Y+ Y +Y D+
Sbjct: 752 IDKKKIHTVVNVNVNKHNVNVLSDVLLMLTCFPWLLSFCLLYALKY-TYKKDK 803
|
|
| TIGR_CMR|BA_4961 BA_4961 "drug resistance transporter, EmrB/QacA family" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 105 (42.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 59 PLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSL 118
P+ L+ R V+ +GA ++ + L ++ Q+ R L GIG V+P ++
Sbjct: 56 PIYGKLADLFGRKKVLLIGATIFLVGSALCGVVTSMEQLIFFRALQGIGAGAVMPITMTI 115
Query: 119 VADSTDET-NRGMAFGWLQ----LTGYLGSVLGGF 148
+ D E +R A GW+ ++G +G ++GGF
Sbjct: 116 IGDLYSEAKDRAKAQGWMSAVWGVSGVIGPLVGGF 150
|
|
| UNIPROTKB|F1ME77 SPNS3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 102 (41.0 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 50/198 (25%), Positives = 78/198 (39%)
Query: 24 MLPGVYKEVGAALHTDPTGLGSL-TLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWA 82
++ GV +V H + G L T+F S + P+ YL H+R ++ G LW+
Sbjct: 95 IIAGVLLDVQKFFHISDSNAGLLQTVFISFLL-LSAPVFGYLGDRHSRKATLSFGILLWS 153
Query: 83 AATFLVAFSSTFFQ--VAVSRGLNGIGLAIVIPAIQSLVADS--TDETNRGMAFGWLQLT 138
A +F S + +SRGL G G A +++ D D+ R +A ++ +
Sbjct: 154 GAGLSSSFISPRYSWLFFLSRGLVGTGTASYSTIAPTVLGDLFVRDQRTRVLAIFYIFIP 213
Query: 139 GYLGSVLGGFCSVLIASTSFMGIPGWRLAFXXXXXXXXXXXXXXXXYANDP-RCLA-KDG 196
+GS LG +A + G WR A DP R A K G
Sbjct: 214 --VGSGLGYVLGSAVAELT--G--NWRWALRIMPCLEAVALILLIMLVPDPPRGAAEKQG 267
Query: 197 TKIDHKPRRPFWADIKDL 214
PR + D++ L
Sbjct: 268 VATTGDPRSSWCEDVRYL 285
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00010917001 | SubName- Full=Chromosome chr7 scaffold_294, whole genome shotgun sequence; (521 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 502 | |||
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-33 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-24 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 9e-12 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-11 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 4e-11 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 7e-11 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 8e-10 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-09 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 9e-07 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-06 | |
| TIGR00805 | 633 | TIGR00805, oat, sodium-independent organic anion t | 2e-04 | |
| TIGR00886 | 366 | TIGR00886, 2A0108, nitrite extrusion protein (nitr | 3e-04 | |
| TIGR02332 | 412 | TIGR02332, HpaX, 4-hydroxyphenylacetate permease | 6e-04 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 0.001 | |
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 0.003 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 0.003 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-33
Identities = 89/367 (24%), Positives = 158/367 (43%), Gaps = 24/367 (6%)
Query: 13 FAAIMERADESMLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRA 71
AA + S+L + L PT +G L S+ + PLA LS R
Sbjct: 3 LAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRR 62
Query: 72 HVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMA 131
V+ +G L+A L+ F+S+ + + V R L G+G + PA +L+AD RG A
Sbjct: 63 RVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRA 122
Query: 132 FGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRC 191
G L LG+ LG L+AS + GWR AF ++ +++++ VL + P
Sbjct: 123 LGLLSAGFGLGAALGPLLGGLLAS-----LFGWRAAFLILAILALLAAVLAALLLPRPP- 176
Query: 192 LAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAFAFAAMWL 251
+ K +P L+ K++++ P +++A +FG + + ++
Sbjct: 177 -------PESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQ 229
Query: 252 ELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAA 311
E++G S L L+ L + +G L G++ D L +R + A ++ A
Sbjct: 230 EVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRR---------LLLALLLLILA 280
Query: 312 VLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFES 371
L L L ++ +AL ++G PA N + +++ P+ R + L + S
Sbjct: 281 ALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNA-LVSDLAPKEERGTASGLYNTAGS 339
Query: 372 IPSSFAP 378
+ + P
Sbjct: 340 LGGALGP 346
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 6e-24
Identities = 80/381 (20%), Positives = 145/381 (38%), Gaps = 53/381 (13%)
Query: 8 LVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAH 67
L+L+ + D +L + L + G + S+ + LA YLS
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 68 HNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETN 127
R V+ LG L+A + L+AF+S+ + + V R L G+G + PA +L+A+
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 128 RGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYAN 187
RG A G LG++LG L+A + GWR F ++ ++ +++ +L+
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESL-----GWRWLFLILAILGLLLALLLLFL-- 173
Query: 188 DPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAFAFA 247
R + + F + ++
Sbjct: 174 ----------------LRLLLL------------LALAFFLLSFGYYGLLTYLPLYL--- 202
Query: 248 AMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVI 307
E++G S L++LF + LG L GG + D L +R + ++
Sbjct: 203 ---QEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL--------LLLIGLLL 251
Query: 308 PTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQ 367
+LLL L + +AL ++G + + PA +E+ P R + L
Sbjct: 252 AALGLLLLALAPSLALLL---VALLLLGFGLGFAFPALLTLA-SELAPPEARGTASGLFN 307
Query: 368 SFESIPSSFAPAVVGILAQHV 388
+F S+ + P + G+L
Sbjct: 308 TFGSLGGALGPLLAGLLLDTG 328
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 9e-12
Identities = 66/340 (19%), Positives = 120/340 (35%), Gaps = 38/340 (11%)
Query: 73 VIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAF 132
+A+ +W T L AF+ + + + R L G A P I +VA + R A
Sbjct: 61 TLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAV 120
Query: 133 GWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCL 192
LG ++GG I W+ AF + G++ +I GVL + DP
Sbjct: 121 SIFNSAQGLGGIIGGPLVGWILIHF-----SWQWAFIIEGVLGIIWGVLWLKFIPDPPQK 175
Query: 193 AK--------------DGTKIDHKPRRPFWADIKDLITDAKM-VIKIPTFQIIVAQGVFG 237
AK + P P IK+L+ D ++ + + F + + G F
Sbjct: 176 AKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFL 235
Query: 238 SFSGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVI 297
++ + G S F+ +L I +G + GG++ D+L +R G+ +
Sbjct: 236 TWF-PTYLVQER-----GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRR----GKSL 285
Query: 298 LSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEI---V 354
+ A + LL+ + + + + + + +A I
Sbjct: 286 VFARKTAIIAGLVLSLLMFATNYVNIP-----YAALALVALGFFGLGAGAIGWALISDNA 340
Query: 355 PERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYKPI 394
P L S ++ P V+G +A +
Sbjct: 341 PGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGA 380
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 63/307 (20%), Positives = 113/307 (36%), Gaps = 48/307 (15%)
Query: 43 LGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRG 102
L S L + L+ R V+ L++ T L A ++ Q+ + R
Sbjct: 57 LFSAGLIGMAFGAL---FFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRF 113
Query: 103 LNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIP 162
L G+GL ++P + +LV++ + RG A G + +G+ +GGF + + IP
Sbjct: 114 LAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL-------IP 166
Query: 163 --GWRLAFHLVGLISVIVGVLVH---------------------VYANDPRCLAKDGTKI 199
GWR F++ G+ +++ +L+ V A P+ A+ + +
Sbjct: 167 VFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSAL 226
Query: 200 DHKPRR-PFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAFAFAAMWLELI---- 254
+ + + K ++ + G + F WL +
Sbjct: 227 PEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVY------FLTNWLPKLMVEL 280
Query: 255 GFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQR----LPDSGRVILSQISAASVIPTA 310
GFS L A LF +G + G + D L R L G V + + PT
Sbjct: 281 GFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTL 340
Query: 311 AVLLLVL 317
+LL +
Sbjct: 341 LLLLGAI 347
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 66/335 (19%), Positives = 122/335 (36%), Gaps = 42/335 (12%)
Query: 6 LTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLS 65
L L L FA E + G+ + A L G L ++ + PL A L+
Sbjct: 16 LALALAAFAIGT---TEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLT 72
Query: 66 AHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDE 125
R ++ L+ + L A + +F + ++R L G+ + +L A
Sbjct: 73 GRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPP 132
Query: 126 TNRGMAFGWLQLTGYLGSVLGGFCSVLIAST---SFMG-IPGWRLAFHLVGLISVIVGVL 181
RG A L V G + +F+G + GWR F + +++++ +L
Sbjct: 133 GKRGRA---------LALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLL 183
Query: 182 VHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSG 241
++ P ++I P ++ L ++ + TF + G F ++
Sbjct: 184 --LWKLLPP------SEISGSLPGPLRTLLRLLRRPGVLLGLLATF--LFMTGHFALYT- 232
Query: 242 SAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQI 301
+ GFS + ++ F IA +G L GG++ D + + L +
Sbjct: 233 ---YIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLAD---RGPRRALIAALLLL 286
Query: 302 SAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGL 336
A+ LL L ++ L LF+ G
Sbjct: 287 ---------ALALLALTFTGASPALALALLFLWGF 312
|
Length = 394 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 7e-11
Identities = 66/367 (17%), Positives = 125/367 (34%), Gaps = 33/367 (8%)
Query: 41 TGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVS 100
T LG L SI + +S N + +G L A FS++ + +A
Sbjct: 30 TDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAAL 89
Query: 101 RGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMG 160
LNGI + P V + RG + + +G G +++ + +
Sbjct: 90 WALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVG--GGLLPPLVLFGIAELY 147
Query: 161 IPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKM 220
W F + G+I++IV ++ + D + + P ++ DA+
Sbjct: 148 --SWHWVFIVPGIIAIIVSLICFLLLRDSP-QSCGLPPAEEMP-------NEEPDGDAEK 197
Query: 221 VIKIPTFQIIVAQGVFGS--FSGSAFAFAAMWLELIGF----------SHKLTAFLMTLF 268
+ T + I Q V + + + +++ G + +
Sbjct: 198 KEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWA 257
Query: 269 VIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDP--STAFL 326
+ LGGL G + L+ +L + R L+ A +I + V L +P L
Sbjct: 258 FTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICL 317
Query: 327 HGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQ 386
L + G M A +E+ P++ + F + A +G LA
Sbjct: 318 FALGFLVYGPQMLIGVIA------SELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD 371
Query: 387 HVYGYKP 393
+G+
Sbjct: 372 G-FGWAG 377
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 8e-10
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Query: 52 IVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIV 111
+ Q PL+ L+ R V+ +G F++ +T + A SS + ++R L G G A
Sbjct: 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68
Query: 112 IPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLG-GFCSVLIASTSFMGIPGWRLAFHL 170
+ A +L+AD RG+A G + LG +LG VL GWR F
Sbjct: 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL------GWRAPFLF 122
Query: 171 VGLISVIVGVLV 182
+ ++++ +L+
Sbjct: 123 LAILALAAFILL 134
|
Length = 141 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 6/149 (4%)
Query: 35 ALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAH-HNRAHVIALGAFLWAAATFLVAFSST 93
L G L + L LS R ++ +G L A L+A + +
Sbjct: 205 VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS 264
Query: 94 FFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLI 153
+ V+ L G GL PA+ +L ++ RG A G G LG LG + L+
Sbjct: 265 LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL 324
Query: 154 ASTSFMGIPGWRLAFHLVGLISVIVGVLV 182
T G+ F ++ ++++ +L+
Sbjct: 325 LDTG-----GYGGVFLILAALALLAALLL 348
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 9e-07
Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 13/154 (8%)
Query: 235 VFGSFSGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSG 294
S A E +G S L+T F + + L G++ D +R
Sbjct: 8 AGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRR----- 62
Query: 295 RVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIV 354
RV+L ++ A LLL+L L + + GL PA + A+
Sbjct: 63 RVLL-----IGLLLFALGLLLLLFASSLWLLL--VLRVLQGLGGGALFPAAAA-LIADWF 114
Query: 355 PERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388
P R L + + ++ P + G+LA
Sbjct: 115 PPEERGRALGLLSAGFGLGAALGPLLGGLLASLF 148
|
Length = 346 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 54/331 (16%), Positives = 116/331 (35%), Gaps = 60/331 (18%)
Query: 74 IALGAFLWAAATFLVAFS--STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMA 131
+ +G L+ L F+ +F+ + V R + G+G+ + + +++ + RG
Sbjct: 79 LLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGAL 138
Query: 132 FGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRC 191
QL G ++ + + S GWR+ L + ++++ + + PR
Sbjct: 139 GSLYQLGITFGILVAAIIGLGLNKYS--NSDGWRIPLGLQFVPAILLLIGLLFLPESPRW 196
Query: 192 LAKDGTKIDHK----------PRRPFWADIKDLI---TDAKMVIKIPTFQ---------I 229
L G + + + KD + +A+ + F+ +
Sbjct: 197 LVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLM 256
Query: 230 IVAQGVFGSFSG--SAFAFAAMWLELIGFSHKLTAFLMTLFV----IAFCLGGLFGGKMG 283
V +F +G + F ++ E +G S + L+T+ V F +F
Sbjct: 257 GVMLQIFQQLTGINAIFYYSPTIFETLGLS---DSLLVTIIVGVVNFVFTFIAIF----- 308
Query: 284 DILAQRLPDSGR-----VILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCM 338
L R GR + + ++ ++ A+L + + + LFI +
Sbjct: 309 --LVDRF---GRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFAL 363
Query: 339 SWNAPATNNPIF----AEIVPERCRTSIYAL 365
W P+ +E+ P R A+
Sbjct: 364 GW------GPVPWVIVSELFPLGVRPKAMAI 388
|
Length = 449 |
| >gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 50/226 (22%), Positives = 80/226 (35%), Gaps = 38/226 (16%)
Query: 91 SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCS 150
S + VS+ L GIG + P S + D N + G L +V G
Sbjct: 169 SLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGIL----ESIAVFGPAFG 224
Query: 151 VLIAS-------------TSFMGI----PGWRLAFHLVGLISVIVGVLVHV-YANDPRCL 192
L+ S T + + P W A+ + LI V +L + P+ L
Sbjct: 225 YLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPLFFFPKAL 284
Query: 193 AKDGT-------------KIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIV-AQGVFGS 238
K+G K + + R+ KD K ++ P + +++ AQ +
Sbjct: 285 PKEGKRVNVDVHETEKLEKSEDESRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSL 344
Query: 239 FSGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVI-AFCLGGLFGGKM 282
F +LE G S FL+ + + A LG L GG +
Sbjct: 345 AFNGYITFLPKYLENQYGISSAEANFLIGVVNVPAAGLGYLIGGFI 390
|
The Organo Anion Transporter (OAT) Family (TC 2.A.60)Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. Length = 633 |
| >gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 49/275 (17%), Positives = 85/275 (30%), Gaps = 25/275 (9%)
Query: 72 HVIALGAFLWAAATFLVAFS-STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGM 130
+ L L A + ++ + + R GI ++ + +G
Sbjct: 68 YTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASC-MPWISFFFPKKIQGT 126
Query: 131 AFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG-----WRLAFHLV-GLISVIVGVLVHV 184
A G G +G + F I + G W AF +V I ++ +L+
Sbjct: 127 ALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFF 186
Query: 185 YANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIK-----IPTFQIIVAQGVFGSF 239
D + W+ + D V + I V FGSF
Sbjct: 187 VGAD--TPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVT---FGSF 241
Query: 240 SGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILS 299
G + FA + + G S +L + G +G ++ RL G
Sbjct: 242 LGVSSIFAMFFKDQFGLSKVTAGAYASLGGLL----GSLARPLGGAISDRL---GGARKL 294
Query: 300 QISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIM 334
+S V A +++L L S A L + +
Sbjct: 295 LMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALF 329
|
[Transport and binding proteins, Anions]. Length = 366 |
| >gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 6e-04
Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 30/205 (14%)
Query: 74 IALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFG 133
IA LW A+ F++ + + R L GI A +P I + R A
Sbjct: 76 IAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANA 135
Query: 134 W----LQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDP 189
+ +T LG +L G+ ++A M + GW+ F L G SVI+GV+ + +D
Sbjct: 136 LFMIAMPVTMALGLILSGY---ILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDS 192
Query: 190 RCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAFAFAAM 249
AK + D K +K++I + ++ ++ P G+F+ +A +M
Sbjct: 193 PDKAKWLDEEDKKA-------LKEMIDNDQLTLEQPE----------GAFAHAAMPQRSM 235
Query: 250 WLELIGFSHKLTAFLMTLFVIAFCL 274
E+ T +M + FCL
Sbjct: 236 LREI------FTPAIMLYTLAYFCL 254
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 56/263 (21%), Positives = 89/263 (33%), Gaps = 34/263 (12%)
Query: 29 YKEVGAALHTDPTGLGSLTLFRSIVQSFCY---PLAAYLSAHH-NRAHVIALGAFLWAAA 84
Y ++G L D T + LF S S Y + +L+ I LGA L A
Sbjct: 49 YYQLGDGLGFDETH--ATGLF-SAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIG 105
Query: 85 TFLVAFSSTF--FQVAVSRGLNGIGLAIVIPAIQSLVAD--STDETNRGMAFGWLQLTGY 140
++A SS + + L +G + P I SL+ + D+ R F Y
Sbjct: 106 HLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLF----Y 161
Query: 141 LGSVLGGFCSVLIASTSFMGIPGWRLAFHL--VGLISVIVGVLVHVYANDPRCLAKDGTK 198
+G +G + +I GW + F L VG+I +V ++ R + G
Sbjct: 162 MGINIGSLIAPIITGL-LAINYGWHVGFGLAAVGMIIGLV-----IFLLGRRHVKGIGGV 215
Query: 199 IDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAFAFAAMWLELIGFSH 258
D P F + L M++ ++ Q F A+ F
Sbjct: 216 PDPNPLS-FNFLLPVLGGLVVMILAALLTL-LLNQNTFSGVLLVISILIAIIYFAEAFRS 273
Query: 259 KLT---------AFLMTLFVIAF 272
A + LF + F
Sbjct: 274 PKVFDERRRLLAAIPLFLFAVIF 296
|
Length = 498 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 65/294 (22%), Positives = 108/294 (36%), Gaps = 37/294 (12%)
Query: 60 LAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLV 119
+ LS N + +A G L A L FS + F AV LNG + P +
Sbjct: 83 VMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTI 142
Query: 120 ADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVG 179
RG W + ++ G ++ F GWR AF+ G+I++IV
Sbjct: 143 THWFSRKERG---TWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVA 199
Query: 180 VLVHV----------------YANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIK 223
+++ Y DP + + + W K V+K
Sbjct: 200 LILLFLLRDRPQSEGLPPIEEYRGDPLEIYE---EEKENEGLTAWQIFV------KYVLK 250
Query: 224 IPTFQIIVAQGVFGSFSGSAF-AFAAMWL-ELIGFSHKLTAFLMTLFVIAFCLGGLFGGK 281
++ VF + ++L E+ GFS + ++LF +A G L G
Sbjct: 251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAG- 309
Query: 282 MGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMG 335
L+ +L R ++ I + TA+++L L + S L + LFI+G
Sbjct: 310 ---WLSDKLFKGRRGPMALIFMLLI--TASLVLYWLAPNGS-YLLDAILLFIIG 357
|
Length = 448 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 51/297 (17%), Positives = 101/297 (34%), Gaps = 26/297 (8%)
Query: 97 VAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGG----FCSVL 152
+ ++R + G L +A+ RG + Q+ +G +L S L
Sbjct: 99 LLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL 158
Query: 153 IASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRR-PFWADI 211
+ + + GWR+ F LV + V++G+ + + K K HK +R P
Sbjct: 159 LGDDALLEW-GWRIPF-LVSAVLVLIGLYLRRNLEETPVFEKAQEK--HKKKRGPIAE-- 212
Query: 212 KDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAFAFAAMWLELIGFSHKLTAFLMTLFVIA 271
+T + + +I F + + L G S ++ L +I
Sbjct: 213 --TLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTL---GLSANSALLVLMLSLIL 267
Query: 272 FCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLAL 331
F + G + D + +R V++ A+++ ++ L+ + F L
Sbjct: 268 FFITIPLSGALSDRIGRR-----PVLIIFTVLAALLAVPLLMALLDSGSFTLFF----FL 318
Query: 332 FIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFES-IPSSFAPAVVGILAQH 387
+ + E+ P R + +L + I FAP + L
Sbjct: 319 VLGMALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM 375
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 502 | |||
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK10054 | 395 | putative transporter; Provisional | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 100.0 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.98 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.98 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.98 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.97 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.97 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.97 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.97 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.97 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.96 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.96 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.96 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.96 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.96 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.96 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.96 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.96 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.95 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.94 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.94 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.94 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.92 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.92 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.92 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.92 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.91 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.91 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.9 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.9 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.9 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.9 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.89 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.89 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.89 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.88 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.87 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.85 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.81 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.8 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.77 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.76 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.76 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.68 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.66 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.65 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.63 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.59 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.58 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.58 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.58 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.56 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.55 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.54 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.54 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.54 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.54 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.53 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.53 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.51 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.51 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.51 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.5 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.5 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.49 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.47 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.46 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.45 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.45 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.43 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.43 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.43 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.41 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.41 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.41 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.39 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.39 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.38 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.36 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.36 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.36 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.35 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.35 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.34 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.34 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.33 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.32 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.31 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.3 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.3 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.29 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.29 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.28 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.27 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.26 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.26 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.26 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.25 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.25 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.25 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.25 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.24 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.22 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.22 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.21 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.21 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.21 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.2 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.2 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.2 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.19 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.18 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.18 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.18 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.18 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.17 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.16 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.15 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.14 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.13 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.13 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.12 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.12 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.11 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.1 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.1 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.08 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 99.07 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.07 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.07 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.07 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.06 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 99.06 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.06 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.05 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.03 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.03 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.02 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.01 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.01 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.01 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.99 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.97 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.96 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.94 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.93 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.92 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.91 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.9 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.89 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.88 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.87 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.85 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.85 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.84 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.82 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.81 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.81 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.8 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.79 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.77 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.75 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.68 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.67 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.66 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.63 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.58 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.56 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.56 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.54 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.54 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.49 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.45 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.42 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.4 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.35 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.31 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.27 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.25 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.2 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.2 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.17 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 98.14 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.03 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.99 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.97 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.95 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.94 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.75 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.75 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.73 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.65 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.54 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 97.3 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.29 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.24 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.22 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.88 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.7 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 96.69 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.65 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.51 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.31 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.19 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.1 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.97 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 95.87 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.84 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 95.71 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 95.47 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 95.43 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.5 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 92.52 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 92.11 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 91.16 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 90.94 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 90.37 | |
| PF03547 | 385 | Mem_trans: Membrane transport protein; InterPro: I | 90.35 | |
| PF02990 | 521 | EMP70: Endomembrane protein 70; InterPro: IPR00424 | 90.12 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 88.64 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 87.84 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 86.47 | |
| PF06912 | 209 | DUF1275: Protein of unknown function (DUF1275); In | 85.07 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 84.38 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 82.54 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 81.84 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 80.84 |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=304.66 Aligned_cols=374 Identities=20% Similarity=0.227 Sum_probs=304.0
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
|+.++..+++++...++.+..++...|.+.++.++|.+|+|++.+++.+.|.++.++.|.++||.+.|+.+.+++++.++
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai 106 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHH--HHHHhhccCCC
Q 010733 84 ATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCS--VLIASTSFMGI 161 (502)
Q Consensus 84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~--~~l~~~~~~~~ 161 (502)
..++++++++.+.+.+.-++.|..+|...|++...++.|++++|||+..++++.+.++|..+.|++. +++..+
T Consensus 107 ~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~----- 181 (448)
T COG2271 107 VNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH----- 181 (448)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc-----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 888877
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccCCcccccC-------CCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHH
Q 010733 162 PGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKD-------GTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQG 234 (502)
Q Consensus 162 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (502)
.+||..|++.++++++.+++.++..+|++...-- ++..+..++++..+.......-.+.+++||..|.+.+..
T Consensus 182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~ 261 (448)
T COG2271 182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALAN 261 (448)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHH
Confidence 7999999999999999999988876664432111 010000000000000111223346788999999877766
Q ss_pred Hhhhh-hhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhh--hcCCCchhHHHHHHHHHHHHHHH
Q 010733 235 VFGSF-SGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILA--QRLPDSGRVILSQISAASVIPTA 310 (502)
Q Consensus 235 ~~~~~-~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~ 310 (502)
.+... =+++..|.|.|+. ..|+|..+++...+.+-+++++|++++||++||+- ||.+. .+++.+.+.
T Consensus 262 vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~---------~~i~~~~i~ 332 (448)
T COG2271 262 VFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM---------ALIFMLLIT 332 (448)
T ss_pred HHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH---------HHHHHHHHH
Confidence 65555 5788899999998 58999999999999999999999999999999975 44321 111112112
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhh-hhchhHHHHHHHHHHHh
Q 010733 311 AVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESI-PSSFAPAVVGILAQHVY 389 (502)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~i~~~~~g~l~~~~~ 389 (502)
..+...+...+.+..+..++++.+|+..-.... +.-..+.|..|++..|++.|+...++++ |...+....|++.|. .
T Consensus 333 ~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqm-LiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~-~ 410 (448)
T COG2271 333 ASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQM-LIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT-W 410 (448)
T ss_pred HHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHH-HHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec-C
Confidence 222222222333456667788888887766665 6777889999999999999999999999 888899999999888 5
Q ss_pred cCCC
Q 010733 390 GYKP 393 (502)
Q Consensus 390 ~~~~ 393 (502)
++..
T Consensus 411 gW~g 414 (448)
T COG2271 411 GWDG 414 (448)
T ss_pred CCcc
Confidence 6653
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=314.06 Aligned_cols=384 Identities=39% Similarity=0.578 Sum_probs=308.7
Q ss_pred CcchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHH
Q 010733 2 KSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLW 81 (502)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~ 81 (502)
+..++.+.++++...+++.|++.+..+.+.+++.+|++++..|++.+.+.+.+.+++|+.|+++|||+||+++.+|..++
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW 108 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCC
Q 010733 82 AAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGI 161 (502)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~ 161 (502)
.++.+++++++.||+++++|.+.|+|.+...|.++++++|.+|.++|++++++++.+.++|..+|.+.+..+.+..
T Consensus 109 ~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~---- 184 (493)
T KOG1330|consen 109 TLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT---- 184 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988862
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHH-----HHHHHh
Q 010733 162 PGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQII-----VAQGVF 236 (502)
Q Consensus 162 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 236 (502)
..|||.|+..++++++++++.+++.+||++...++.+.+.+...+. ...+++.+.+.+++.+... ...+..
T Consensus 185 ~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~----ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~ 260 (493)
T KOG1330|consen 185 FWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPF----TSVWKDLKVLAKIKVFVLSSLGIIAAQFVI 260 (493)
T ss_pred cceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCc----cchHHHHHHHHccCceeeehHHHHHHHHhc
Confidence 4499999999999999999999988888764333332222111122 3344555555555554433 333333
Q ss_pred hhhhhhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 010733 237 GSFSGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLV 316 (502)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (502)
+...|....+.+...+-.|++..+.-++..+...++.+|.+++|.++||+.++.+...+.........+........+..
T Consensus 261 Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~ 340 (493)
T KOG1330|consen 261 GSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFL 340 (493)
T ss_pred cccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHH
Confidence 33333333333333344577777777888888999999999999999998887666556666666666666666666655
Q ss_pred cCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchh-HHHHHHHHHHHhcCCC
Q 010733 317 LPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFA-PAVVGILAQHVYGYKP 393 (502)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~-~~~~g~l~~~~~~~~~ 393 (502)
.+..........+.++++|....+...+...-+..+..|++.|.++.++...+..+.+-.+ |++.|.+.|+..++++
T Consensus 341 ~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~~ 418 (493)
T KOG1330|consen 341 FPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYKP 418 (493)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCCc
Confidence 5555555555566677777776666655778888999999999999999998887666555 5599999999988875
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=293.75 Aligned_cols=354 Identities=18% Similarity=0.247 Sum_probs=285.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHH
Q 010733 3 SETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWA 82 (502)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~ 82 (502)
..|..++.+.++.|..+....+...++|++.+|+|+|..+.|++.|.|.+++.++.|+...+.||+.||++++..+.++.
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi 89 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFI 89 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCc
Q 010733 83 AATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIP 162 (502)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~ 162 (502)
++.+++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.+++.++.+. +
T Consensus 90 ~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~-----~ 164 (394)
T COG2814 90 VSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL-----F 164 (394)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH-----h
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hh
Q 010733 163 GWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SG 241 (502)
Q Consensus 163 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 241 (502)
|||+.|++.++++++..+..+...| |+..+.+. +...++..+++|+|..+......++... .|
T Consensus 165 GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~~~~---------------~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F 228 (394)
T COG2814 165 GWRATFLAIAVLALLALLLLWKLLP-PSEISGSL---------------PGPLRTLLRLLRRPGVLLGLLATFLFMTGHF 228 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCCC---------------CcchhHHHHHhcCchHHHHHHHHHHHHcchh
Confidence 9999999999999998888777443 22111111 1112334566777777765555544444 67
Q ss_pred hHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010733 242 SAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDD 320 (502)
Q Consensus 242 ~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (502)
..++|+..+++ ..|+|....++....+++++++|+.++|++.|| +.|+ .... ....... ....+. ..
T Consensus 229 ~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~-----~l~~-~~~l~a~--~~l~l~---~~ 296 (394)
T COG2814 229 ALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRR-----ALIA-ALLLLAL--ALLALT---FT 296 (394)
T ss_pred hhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchh-----HHHH-HHHHHHH--HHHHHH---Hh
Confidence 88888777776 589999999999999999999999999999999 5553 1111 1111111 111111 12
Q ss_pred CchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 321 PSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
..+.+......++.|+....... .......+.. ++.+..+.+++....++|..+|..++|.+.|+ .++.
T Consensus 297 ~~~~~~~~~~~~~wg~a~~~~~~-~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~-~g~~ 365 (394)
T COG2814 297 GASPALALALLFLWGFAFSPALQ-GLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDA-LGYA 365 (394)
T ss_pred cchHHHHHHHHHHHHHHhhhhhh-HHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchH
Confidence 22233344455556666665555 4455555533 47799999999999999999999999999999 5665
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=315.23 Aligned_cols=369 Identities=14% Similarity=0.178 Sum_probs=256.2
Q ss_pred hHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCcc-chHH-----HHHHHHHHHHhhhhhhHhhhccCchHHHHHHH
Q 010733 5 TLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTG-LGSL-----TLFRSIVQSFCYPLAAYLSAHHNRAHVIALGA 78 (502)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~g~~-----~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~ 78 (502)
++.+....++++++++|...++...|.+.++++.+.++ .+++ .++..+++.+++++.|+++||+|||+++.+++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 45677788999999999999999999999999765433 2332 47778999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHH--------HHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHH
Q 010733 79 FLWAAATFLVAFSSTFFQ--------VAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCS 150 (502)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 150 (502)
++++++++++++++|+++ ++++|+++|++.|+.++...+++.|++|+++|+++.++...+..+|.++++.+.
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999875 889999999999999999999999999999999999999999999998888776
Q ss_pred HHHHhhc---cCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCC---CcchhhhHHHHHHhhhhhhh
Q 010733 151 VLIASTS---FMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPR---RPFWADIKDLITDAKMVIKI 224 (502)
Q Consensus 151 ~~l~~~~---~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 224 (502)
..+.... ....+|||++|++.+++.++..++...++|+|++...+++.++.+.+ +....+.++.++.. .
T Consensus 175 ~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 249 (490)
T PRK10642 175 VLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKH-----W 249 (490)
T ss_pred HHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHh-----H
Confidence 5553210 01127999999998776665444444466666543221111000000 00011111111110 1
Q ss_pred hHHHHHH-HHHHhhhhhhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHH
Q 010733 225 PTFQIIV-AQGVFGSFSGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQIS 302 (502)
Q Consensus 225 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 302 (502)
+.+.... ...+.....+....|+|.|++ .+|++..+.++......++.+++.++.|+++||+|||+ .+.....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-----~~~~~~~ 324 (490)
T PRK10642 250 RSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRP-----FVILGSV 324 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-----HHHHHHH
Confidence 1122222 222223334566779999997 57999888888888888899999999999999999984 2211111
Q ss_pred HHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHH
Q 010733 303 AASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVG 382 (502)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g 382 (502)
..... ....+.... .+. ...+....++.+++.+.... ....+..|.+|++.|+++.|+.+....+++.++|.+.|
T Consensus 325 -~~~~~-~~~~~~~~~-~~~-~~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g 399 (490)
T PRK10642 325 -ALFVL-AIPAFILIN-SNV-IGLIFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAA 399 (490)
T ss_pred -HHHHH-HHHHHHHHh-CCC-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 111111111 111 22233334445554444433 45677789999999999999877777788899999999
Q ss_pred HHHHHH
Q 010733 383 ILAQHV 388 (502)
Q Consensus 383 ~l~~~~ 388 (502)
++.+..
T Consensus 400 ~l~~~~ 405 (490)
T PRK10642 400 WLVEST 405 (490)
T ss_pred HHHHHh
Confidence 998864
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=309.76 Aligned_cols=372 Identities=17% Similarity=0.143 Sum_probs=287.6
Q ss_pred CCcchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHH
Q 010733 1 MKSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFL 80 (502)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l 80 (502)
|.++|..+..++++.++...|.++.+..+|.+.+|+|.+.++.+|+.+.|.+++.++.+++|+++||+|||++++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~ 80 (495)
T PRK14995 1 MFRQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTL 80 (495)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhcc-CcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccC
Q 010733 81 WAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADST-DETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFM 159 (502)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 159 (502)
++++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|++++++......+|.++||.+++++.++
T Consensus 81 ~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~--- 157 (495)
T PRK14995 81 FGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH--- 157 (495)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---
Confidence 9999999999999999999999999999999998888887776 678999999999999999999999999999998
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHh-hccCCcccccCCCccCC----------------CCCCcchhhhH----------
Q 010733 160 GIPGWRLAFHLVGLISVIVGVLVHV-YANDPRCLAKDGTKIDH----------------KPRRPFWADIK---------- 212 (502)
Q Consensus 160 ~~~~w~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~---------- 212 (502)
.+|||.|++...+.++..++.++ .|++++. +.++.+... ...+..+....
T Consensus 158 --~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~-~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (495)
T PRK14995 158 --FYWGSVFLINVPIVLVVMGLTARYVPRQAGR-RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGAL 234 (495)
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHhCCCCCCC-CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 89999999988877776666555 4433321 111110000 00000110000
Q ss_pred ----HHHHHh--------hhhhhhhHHHHHHHHHHhhhh-hhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhh
Q 010733 213 ----DLITDA--------KMVIKIPTFQIIVAQGVFGSF-SGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLF 278 (502)
Q Consensus 213 ----~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~ 278 (502)
....+. .++++++.+.......+.... .++...+.|.|++ .+|+++.++|+...+..++..++.++
T Consensus 235 ~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~ 314 (495)
T PRK14995 235 LLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPI 314 (495)
T ss_pred HHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000111 256777777665555544444 3455568899998 58999999999999999999999999
Q ss_pred hHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCC
Q 010733 279 GGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERC 358 (502)
Q Consensus 279 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~ 358 (502)
.|++.||+++|+ .... ...+. .+....+......++.+ ......++.|++.+...+ .....+.+..|+++
T Consensus 315 ~g~l~~r~g~~~-----~~~~--g~~~~-~~~~~~l~~~~~~~~~~-~~~~~~~l~G~g~g~~~~-~~~~~~~~~~~~~~ 384 (495)
T PRK14995 315 AGILVSRLGLRL-----VATG--GMALS-ALSFYGLAMTDFSTQQW-QAWGLMALLGFSAASALL-ASTSAIMAAAPPEK 384 (495)
T ss_pred HHHHHHHcCchH-----HHHH--HHHHH-HHHHHHHHHhcCCCchH-HHHHHHHHHHHhHHHHHH-HHHHHHHhcCCHHh
Confidence 999999999873 2211 11111 11111111122222222 234566777888887776 66778888899999
Q ss_pred chhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 359 RTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 359 ~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
++.+.++.++..++|+.+|+.+.|.+.+..
T Consensus 385 ~g~~~~~~~~~~~lG~~~G~ai~g~i~~~~ 414 (495)
T PRK14995 385 AAAAGAIETMAYELGAGLGIAIFGLLLSRS 414 (495)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998864
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=308.75 Aligned_cols=378 Identities=16% Similarity=0.128 Sum_probs=276.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHH
Q 010733 3 SETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWA 82 (502)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~ 82 (502)
.+|+.+..+++.++++++|+..++...|.+.+|+|++.++.|++.+++.+++.+++++.|++.||+|||+++..+.++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~ 84 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWG 84 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHH
Confidence 36888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhc-cCCC
Q 010733 83 AATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTS-FMGI 161 (502)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-~~~~ 161 (502)
++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|.++++++++++.+.. ..+.
T Consensus 85 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 164 (412)
T TIGR02332 85 IASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMAL 164 (412)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887421 1122
Q ss_pred cchhHHHHHHHHHHHHHHHHHHh-hccCCcccc---cCCCcc-------CC---CCCCcc-hhhhHHHHHHhhhhhhhhH
Q 010733 162 PGWRLAFHLVGLISVIVGVLVHV-YANDPRCLA---KDGTKI-------DH---KPRRPF-WADIKDLITDAKMVIKIPT 226 (502)
Q Consensus 162 ~~w~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~-------~~---~~~~~~-~~~~~~~~~~~~~~~~~~~ 226 (502)
.+||+.|++.+++.++..++.++ ++|+|+..+ .++++. ++ +..+.. .++.......++.++ ++.
T Consensus 165 ~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 243 (412)
T TIGR02332 165 KGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-TPA 243 (412)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-ChH
Confidence 69999999998888877666655 444443211 100000 00 000000 000000011233344 355
Q ss_pred HHHHHHHHHhhhh-hhhHHHhHHHHHHHh--CCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHH
Q 010733 227 FQIIVAQGVFGSF-SGSAFAFAAMWLELI--GFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISA 303 (502)
Q Consensus 227 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 303 (502)
++......++... .+...+|+|.+++++ |++..+++.......++.+++.++.|+++||+++|+ ........
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~-----~~~~~~~~ 318 (412)
T TIGR02332 244 IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK-----HHTALPYL 318 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH-----HHHHHHHH
Confidence 5555444444333 456678999999874 678888999999999999999999999999998774 11111111
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHH
Q 010733 304 ASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGI 383 (502)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~ 383 (502)
.. .. ...+... ..+. .. ....+...+++.....+ .......|.+|++.|++++|+.+...++|++++|.+.|.
T Consensus 319 ~~-~~--~~~~~~~-~~~~-~~-~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~ 391 (412)
T TIGR02332 319 FA-AA--GWLLASA-TDHN-LI-QLLGIIMASMGSFSAMA-IFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGI 391 (412)
T ss_pred HH-HH--HHHHHHh-cCCH-HH-HHHHHHHHHHHhhhhhh-HHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 11 11 1111111 1122 21 11122223333322233 334555678899999999999999999999999999999
Q ss_pred HHHHHhcCCC
Q 010733 384 LAQHVYGYKP 393 (502)
Q Consensus 384 l~~~~~~~~~ 393 (502)
+.|..++|+.
T Consensus 392 i~~~~g~~~~ 401 (412)
T TIGR02332 392 LKDATGSFNS 401 (412)
T ss_pred ccccCCCCch
Confidence 9998656653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=316.66 Aligned_cols=369 Identities=18% Similarity=0.183 Sum_probs=270.6
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
.+.++..+++++++.+.++..+++..|.+.+|+|++.++.|++.+++.+++.+++++.|+++||+|||+++..+.+++++
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 106 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI 106 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence 34567788888889999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHh-----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhcc
Q 010733 84 ATFLVAF-----SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSF 158 (502)
Q Consensus 84 ~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~ 158 (502)
+.++.++ +++++.+++.|+++|++.+...|...+++.+|+|+++|++++|+...+.++|.++++++..++.+...
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~ 186 (467)
T PRK09556 107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF 186 (467)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence 7776665 58999999999999999999999999999999999999999999999999999999999877766410
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhccC-CcccccCCCcc---CC---CCCCcchhhhHHHHHH-hhhhhhhhHHHHH
Q 010733 159 MGIPGWRLAFHLVGLISVIVGVLVHVYAND-PRCLAKDGTKI---DH---KPRRPFWADIKDLITD-AKMVIKIPTFQII 230 (502)
Q Consensus 159 ~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 230 (502)
..+||..|.+.+++.++.+++.+++.++ |+.....++++ +. ++.....++.. .... .+..++++.++..
T Consensus 187 --~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 263 (467)
T PRK09556 187 --DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMT-KWQIFVEYVLKNPVIWLL 263 (467)
T ss_pred --cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCc-HHHHHHHHHHcChHHHHH
Confidence 0269999999888888777766665433 32211100000 00 00000000000 0011 2236778887776
Q ss_pred HHHHHhhhh-hhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHH
Q 010733 231 VAQGVFGSF-SGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIP 308 (502)
Q Consensus 231 ~~~~~~~~~-~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 308 (502)
.+..++... .++...|+|.|++ ++|++..++++......++.+++.++.|+++||+++|+. ...... .....
T Consensus 264 ~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~-----~~~~~~-~~~~~ 337 (467)
T PRK09556 264 CFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA-----LVACIA-LALII 337 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch-----HHHHHH-HHHHH
Confidence 665555444 3456679999997 589999999999999999999999999999999998852 211111 11111
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhh-hhchhHHHHHHHHH
Q 010733 309 TAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESI-PSSFAPAVVGILAQ 386 (502)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~i~~~~~g~l~~ 386 (502)
...... ...++. ....+..+..|+....... .......|.+|++.+|++.|+.+..+++ +++++|.+.|.+.|
T Consensus 338 -~~~~~~--~~~~~~-~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 338 -FTLGVY--QHATSE-YMYLASLFALGFLVFGPQL-LIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred -HHHHHH--HhcCcH-HHHHHHHHHHHHHHhhHHH-HHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 111111 112222 2233444555543322221 1235667999999999999999999997 66999999999999
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=300.78 Aligned_cols=352 Identities=16% Similarity=0.192 Sum_probs=269.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHH
Q 010733 3 SETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWA 82 (502)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~ 82 (502)
++|..++.+.++.++.........+++|.+.+++|.|+++.|++.+.+.+++.+++++.|++.||+|||+++..+.++.+
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 85 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFI 85 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 34555666666666654555556677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCc
Q 010733 83 AATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIP 162 (502)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~ 162 (502)
++++++++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++.+.+. .
T Consensus 86 ~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~-----~ 160 (390)
T PRK03545 86 ASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY-----L 160 (390)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH-----h
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887 8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHH-hhhhhh
Q 010733 163 GWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGV-FGSFSG 241 (502)
Q Consensus 163 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 241 (502)
+||+.|++.+++.++..+..+...++++.+ + +. ..++.++.++++.++......+ .....+
T Consensus 161 gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~---~--------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (390)
T PRK03545 161 GWRTTFLAIGGGALITLLLLIKLLPLLPSE---H--------SG-------SLKSLPLLFRRPALVSLYLLTVVVVTAHF 222 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCCC---C--------cc-------hHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 999999999988877766655533322110 0 00 1123445667777655433333 333344
Q ss_pred hHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010733 242 SAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDD 320 (502)
Q Consensus 242 ~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (502)
....+.+.+++ +.|+++.+++.+.....++.++++++.+++.||+++|. ... .... .......+... .
T Consensus 223 ~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-----~~~--~~~~--~~~~~~~l~~~--~ 291 (390)
T PRK03545 223 TAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF-----LLI--AIAL--LLVCLLLLLPA--A 291 (390)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH-----HHH--HHHH--HHHHHHHHHHH--h
Confidence 45567777777 47999999999999999999999999999999998762 111 1111 11111111111 1
Q ss_pred CchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 321 PSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
+ ..+......++.|++.+...+ .....+.+..| +.+++++|+.+...++|..+||.+.|.+.|.. ++.
T Consensus 292 ~-~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~-g~~ 359 (390)
T PRK03545 292 N-SEWHLSVLSIFWGIAIMCIGL-AMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL-GLS 359 (390)
T ss_pred c-hHHHHHHHHHHHHHHHhcchH-HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Chh
Confidence 2 223344556667777665555 45677777766 67899999999999999999999999999984 543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=301.87 Aligned_cols=373 Identities=15% Similarity=0.174 Sum_probs=272.6
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
++..+...++++++.+++...++..+|.+.+++|.|+++.|++.+.+.+++.+++++.|++.||+|||+++.++.++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence 34566677888888888988999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcc
Q 010733 84 ATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG 163 (502)
Q Consensus 84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~ 163 (502)
+.+++++++|++.+++.|++.|++.|...+...+++.+++|+++|++++++.+.+.++|.++++.+++++.+. .+
T Consensus 101 ~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~g 175 (434)
T PRK11663 101 INILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH-----YG 175 (434)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-hccCCcccccCCCc--cCC--C--CC-CcchhhhHHHHHHhhhhhhhhHHHHHHHHHH
Q 010733 164 WRLAFHLVGLISVIVGVLVHV-YANDPRCLAKDGTK--IDH--K--PR-RPFWADIKDLITDAKMVIKIPTFQIIVAQGV 235 (502)
Q Consensus 164 w~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~--~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (502)
||+.|++.+++.++..++.++ ++++|++...+... +++ + .+ +....+.++.++ +..++++.++.+....+
T Consensus 176 w~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 253 (434)
T PRK11663 176 WRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILT--KYVLLNPYIWLLSFSYV 253 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHH--HHHhcChHHHHHHHHHH
Confidence 999999988877766554444 45444322111000 000 0 00 000001111111 12456677666555444
Q ss_pred hhhh-hhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 010733 236 FGSF-SGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVL 313 (502)
Q Consensus 236 ~~~~-~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
.... ......|+|.|++ ++|++..+++...+...+++++++++.|++.||+.+++. +............ ....
T Consensus 254 ~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r---~~~~~~~~~~~~~--~~~~ 328 (434)
T PRK11663 254 LVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNR---GPMNLIFAAGILL--SVGS 328 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCc---cHHHHHHHHHHHH--HHHH
Confidence 4333 3355578999996 689999999999999999999999999999999843321 1111111111111 1111
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 314 LLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
+...... +... .....+..|++...... .......|..|++.+++++|+.++..++|++++|++.|++.|.. ++.
T Consensus 329 ~~~~~~~-~~~~-~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~-g~~ 403 (434)
T PRK11663 329 LWLMPFA-SYVM-QAACFFTIGFFVFGPQM-LIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW-HWT 403 (434)
T ss_pred HHHcccc-cHHH-HHHHHHHHHHHHhhHHH-HHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc-ccH
Confidence 1112222 2222 22233334443222111 23456688899999999999999999999999999999999984 554
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=301.04 Aligned_cols=366 Identities=15% Similarity=0.128 Sum_probs=268.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHH
Q 010733 3 SETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWA 82 (502)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~ 82 (502)
.+++.+....++++.++++.....+..|.+.+++|+|+.+.+++.+++.+++.+++++.|+++||+|||+++.++.++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~ 94 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 34667788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCc
Q 010733 83 AATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIP 162 (502)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~ 162 (502)
++.++++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+.++|.++++.+.+.+.+. .
T Consensus 95 ~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~-----~ 169 (426)
T PRK12307 95 VGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA-----Y 169 (426)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc-----C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888876 8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh---
Q 010733 163 GWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF--- 239 (502)
Q Consensus 163 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 239 (502)
+||+.|++..+..++...+....|+++++.+++.+ ++.+..+..+ +......+.+++++.++.........+.
T Consensus 170 ~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (426)
T PRK12307 170 GWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS-GKGKHSQSAW---SVFSLSMKGLFNRAQFPLTLCVFIVLFSIFG 245 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh-ccccccccch---hhhhHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 99999998654433322222223333222111111 1111111111 1112234556666666543332222222
Q ss_pred -hhhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcC
Q 010733 240 -SGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLP 318 (502)
Q Consensus 240 -~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (502)
.+....++|.|+++.|+++.+.+...+...++.++++++.+++.||++||+ ...... ..... ....+....
T Consensus 246 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-----~~~~~~--~~~~~-~~~~~~~~~ 317 (426)
T PRK12307 246 ANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK-----TFSIGL--LMSFL-FIFPLFRIP 317 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-----HHHHHH--HHHHH-HHHHHHHHc
Confidence 223456889999988999999999999999999999999999999999884 221111 11111 111111111
Q ss_pred CCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 319 DDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
.. .........+..++......+ ....++.|.+|++.||+++|+.+....+++.++|.+.|++.+..
T Consensus 318 -~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~ 384 (426)
T PRK12307 318 -QD-NYLLLGACLFGLMATNVGVGG-LVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM 384 (426)
T ss_pred -cc-cHHHHHHHHHHHHHhcccHhH-HHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence 11 122122222222222222222 45677889999999999999999999999999999999998874
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=299.15 Aligned_cols=359 Identities=19% Similarity=0.192 Sum_probs=273.9
Q ss_pred CcchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHH
Q 010733 2 KSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLW 81 (502)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~ 81 (502)
+++|.++.+.++..++++++....+...|.+.+++|.++.+.|++.+.+.++..++.++.|+++||+|||+++..+.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF 90 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 45677888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCC
Q 010733 82 AAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGI 161 (502)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~ 161 (502)
+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----- 165 (406)
T PRK11551 91 GLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD----- 165 (406)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred cchhHHHHHHHHHHHHHHHHHHh-hccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHH-HHHHHhhhh
Q 010733 162 PGWRLAFHLVGLISVIVGVLVHV-YANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQII-VAQGVFGSF 239 (502)
Q Consensus 162 ~~w~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 239 (502)
.+||+.|++.+++.++..++... ++|++++..++.++ + ..+.. .+...++ + +.+..+.. ....+....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~--~~~~~---~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 235 (406)
T PRK11551 166 AAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAG-K--QRAPV---LRALFGE-G---RATATLLLWISYFFTLIV 235 (406)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcc-h--hhhhh---HHHHhhh-h---hhhHHHHHHHHHHHHHHH
Confidence 89999999988776666655544 45444332211110 0 00000 0111111 0 11111112 222222223
Q ss_pred hhhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCC
Q 010733 240 SGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPD 319 (502)
Q Consensus 240 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (502)
.+....|.|.++++.|+++.+.+.......++.++++++.|++.||+++|+ .... .. .........+ ..
T Consensus 236 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~~~~-~~--~~~~~~~~~~-~~-- 304 (406)
T PRK11551 236 LYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR-----VVLL-IY--AGILASLAAL-AA-- 304 (406)
T ss_pred HHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHH-HH--HHHHHHHHHH-Hh--
Confidence 345566899999989999999999999999999999999999999999884 2211 11 1111111111 11
Q ss_pred CCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 320 DPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
.++.+ ...+..++.|++.+...+ ...++..|.+|+++|+++.|+.+....+++.++|.+.|.+.+..
T Consensus 305 ~~~~~-~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~ 371 (406)
T PRK11551 305 APSFA-GMLLAGFAAGLFVVGGQS-VLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG 371 (406)
T ss_pred cCcHH-HHHHHHHHHHHHHHhHHH-HHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence 12222 233445556666655555 56788999999999999999999999999999999999998864
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=289.92 Aligned_cols=333 Identities=15% Similarity=0.115 Sum_probs=249.5
Q ss_pred ccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 010733 23 SMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRG 102 (502)
Q Consensus 23 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~ 102 (502)
...++++|.+++|+|+|.++.|++.+.+.+++.+++++.|++.||+|||+++..+..+++++.+++++++|++.++++|+
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~ 105 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL 105 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHH
Q 010733 103 LNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLV 182 (502)
Q Consensus 103 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~ 182 (502)
++|++.+...+....++.+++| ++|+++++++..+...|..+++.+++++.++. .+||+.+.+.++..++..+..
T Consensus 106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~----~~w~~~~~~~~~~~~~~~~~~ 180 (393)
T PRK09705 106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS----ETWYQTLAWWALPAVVALFAW 180 (393)
T ss_pred HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 78999999999999999999999999988761 389999887766655444333
Q ss_pred HhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhh-hhhhHHHhHHHHHHHhCCChhHH
Q 010733 183 HVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGS-FSGSAFAFAAMWLELIGFSHKLT 261 (502)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~ 261 (502)
+...++.+..+ ++ + +. ..++.++++..+...+..++.. ..+....|+|.+++++|.+..++
T Consensus 181 ~~~~~~~~~~~---~~--~--~~-----------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~a 242 (393)
T PRK09705 181 WWQSAREVASS---HK--T--TT-----------TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYS 242 (393)
T ss_pred HHHhcCCCccc---cC--C--Cc-----------CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhh
Confidence 33322211100 00 0 00 0112233444444333333333 34466678999999899999999
Q ss_pred HHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcC
Q 010733 262 AFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWN 341 (502)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 341 (502)
+...+..+++.++++++.+++.||+++|+ ...... .+ .......+...+. .... . ..++.|++.+..
T Consensus 243 g~~~~~~~i~~i~g~~~~g~l~~r~~~~~-----~~~~~~--~l-~~~~~~~~~~~~~--~~~~-~--~~~l~g~g~g~~ 309 (393)
T PRK09705 243 GSLLALMTLGQAAGALLMPAMARHQDRRK-----LLMLAL--VL-QLVGFCGFIWLPL--QLPV-L--WAMVCGLGLGGA 309 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccchH-----HHHHHH--HH-HHHHHHHHHHccc--hHHH-H--HHHHHHHhccch
Confidence 99999999999999999999999999884 221111 11 1111111111221 1111 1 223456666665
Q ss_pred CCCcchhhhhhccC-CCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 342 APATNNPIFAEIVP-ERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 342 ~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
.+ .......+..+ ++.+++.+|+.+...++++.++|.+.|++.|..+++.
T Consensus 310 ~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 360 (393)
T PRK09705 310 FP-LCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYL 360 (393)
T ss_pred HH-HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 55 44555556664 5788999999999999999999999999999975543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=299.99 Aligned_cols=373 Identities=14% Similarity=0.092 Sum_probs=273.7
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
+|.++....+.......+...++..+|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++
T Consensus 17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 96 (455)
T TIGR00892 17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASL 96 (455)
T ss_pred chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHH
Confidence 56666666666666666667788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHH-HHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCc
Q 010733 84 ATFLVAFSSTFFQVAV-SRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIP 162 (502)
Q Consensus 84 ~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~ 162 (502)
++++++++++++.+++ .|+++|++.+...+...+++.++++ ++|++++++.+.+..+|..++|++++.+.+. .
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~-----~ 170 (455)
T TIGR00892 97 GMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES-----F 170 (455)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH-----h
Confidence 9999999999998875 5799999999877788889999995 7899999999999999999999999999887 8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccCCcccc--cCC--CccCCC-C-CC-cchhhhHHHHHHh--hhhhhhhHHHHHHHH
Q 010733 163 GWRLAFHLVGLISVIVGVLVHVYANDPRCLA--KDG--TKIDHK-P-RR-PFWADIKDLITDA--KMVIKIPTFQIIVAQ 233 (502)
Q Consensus 163 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~-~-~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 233 (502)
|||+.|++.+++.++..+..++..+.++..+ ..+ +..+.. . ++ ......++ ..+. .+++++|.++.....
T Consensus 171 gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 249 (455)
T TIGR00892 171 GWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEK-INRFLDFSLFTHRGFLVYLSG 249 (455)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhh-hhhhcchHHhcCchHHHHHHH
Confidence 9999999999887766655444432221110 000 000000 0 00 00000011 1111 246677877766665
Q ss_pred HHhhhh-hhhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHH
Q 010733 234 GVFGSF-SGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAV 312 (502)
Q Consensus 234 ~~~~~~-~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
.+.... .+....++|.|.++.|+++.+++++.+..+++.++++++.+++.||...++. +.......... ..+..+
T Consensus 250 ~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~---~~~~~~~~~~~-~~l~~l 325 (455)
T TIGR00892 250 NVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPH---VQYLFSFALLF-NGLTHL 325 (455)
T ss_pred HHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHH---HHHHHHHHHHH-HHHHHH
Confidence 444443 3455568899998899999999999999999999999999999997422110 11111111111 111111
Q ss_pred HHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 313 LLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
+... .++ .+.+.+..++.|++.+...+ ...+++.|.+|++++++++|+.+...+++++++|.+.|.+.|..+++.
T Consensus 326 -l~~~--~~~-~~~~~i~~~~~G~~~g~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~ 400 (455)
T TIGR00892 326 -LCAL--AGD-YTGLVIYCIFFGLSFGSVGA-LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYK 400 (455)
T ss_pred -HHHH--hch-HHHHHHHHHHHHHHhchHHH-HHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcc
Confidence 1111 122 23344566677888777766 678888999999999999999999999999999999999999865554
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=286.69 Aligned_cols=336 Identities=14% Similarity=0.041 Sum_probs=244.4
Q ss_pred HHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 010733 18 ERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQV 97 (502)
Q Consensus 18 ~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l 97 (502)
+......+++.+|.+++|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+.....+|++.+
T Consensus 3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL 82 (368)
T ss_pred hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34455678889999999999999999999999999999999999999999999988776655555544333334799999
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHH
Q 010733 98 AVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVI 177 (502)
Q Consensus 98 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~ 177 (502)
++.|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.+++++++.++.++ .|||+.|++.++++++
T Consensus 83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~-----~gWr~~f~~~~~l~~~ 156 (368)
T TIGR00903 83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA-----GGLQLLIIPIAAVAAA 156 (368)
T ss_pred HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cchHHHHHHHHHHHHH
Confidence 9999999999986 456666779999999999999999999999999999999999887 8999999998888887
Q ss_pred HHHHHHh-hccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHHhHHHHHHHhC
Q 010733 178 VGVLVHV-YANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFAFAAMWLELIG 255 (502)
Q Consensus 178 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g 255 (502)
..++.++ +||+|++..+ . .+ . ++..+++++++++|.++......++... .++..+|+|.|+++.|
T Consensus 157 ~~~~~~~~lp~~p~~~~~---~-----~~-~----~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g 223 (368)
T TIGR00903 157 GIILVLAALPALPFQAAE---G-----FG-F----KDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAG 223 (368)
T ss_pred HHHHHHHHcCCCCCCCCC---C-----cc-h----HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 7766655 5554433211 0 00 0 1112346678888888877666665555 5577789999999888
Q ss_pred CChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 010733 256 FSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMG 335 (502)
Q Consensus 256 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 335 (502)
++.. .+.......+.+.++ .++++||..||+.. +.......... .+. ....... .+... ......+.+
T Consensus 224 ~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r--~~~~~~~~~~~--a~~-~~~~~~~--~~~~~-~~~~~~l~~ 291 (368)
T TIGR00903 224 LEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLR--SIYIRAAALLI--AAF-FLALAFE--LNRLA-LFAFIGIAG 291 (368)
T ss_pred CChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhH--HHHHHHHHHHH--HHH-HHHHHHc--cccHH-HHHHHHHHH
Confidence 8865 566655555555555 47888887665311 11111111111 111 1111111 11222 233444455
Q ss_pred HhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHH
Q 010733 336 LCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILA 385 (502)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~ 385 (502)
++.....+ ..+++.+|.+|++.|+++.|+.+..+++++.++|.+.+.+.
T Consensus 292 ~~~~~~~~-~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 292 LLMLPAYA-IIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred HhhhhhHH-HHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 55555555 56789999999999999999999999999999999998777
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=308.34 Aligned_cols=372 Identities=13% Similarity=0.140 Sum_probs=271.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHH
Q 010733 3 SETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWA 82 (502)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~ 82 (502)
.+|.++.+++++.+..+++...++.++|.+.+++|++..+.+++.+++.++++++++++|+++||+|||+++++++++.+
T Consensus 164 ~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~ 243 (742)
T TIGR01299 164 FQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNG 243 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 35667778888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhc-----
Q 010733 83 AATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTS----- 157 (502)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~----- 157 (502)
++.++++++++++.++++|++.|++.++..+...+++.|++|+++|++.+++..++..+|.++++.++..+....
T Consensus 244 i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~ 323 (742)
T TIGR01299 244 FFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQ 323 (742)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999887776431
Q ss_pred ---cCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccC----------CC-C-----CC-------------
Q 010733 158 ---FMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKID----------HK-P-----RR------------- 205 (502)
Q Consensus 158 ---~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~-----~~------------- 205 (502)
.....+||+.+++.+++.++..++.+++||+|++...+++.++ .+ . .+
T Consensus 324 ~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~ 403 (742)
T TIGR01299 324 MGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQE 403 (742)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhh
Confidence 0112479999999988888777777778999887543322110 00 0 00
Q ss_pred --------c--chh---------hhHHHHHHhhhhhhhhH----HHHHHHHHHhhhhhhhHHHhHHHHHHHh--------
Q 010733 206 --------P--FWA---------DIKDLITDAKMVIKIPT----FQIIVAQGVFGSFSGSAFAFAAMWLELI-------- 254 (502)
Q Consensus 206 --------~--~~~---------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 254 (502)
. .+. .....+.+.+.+++.+. +.+.+..+...+.+|+...|+|.++++.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~ 483 (742)
T TIGR01299 404 DELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAAL 483 (742)
T ss_pred hhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 000 00011122334444333 3334444444444677788999876431
Q ss_pred ----------------------------------CCC-------------------------------------------
Q 010733 255 ----------------------------------GFS------------------------------------------- 257 (502)
Q Consensus 255 ----------------------------------g~s------------------------------------------- 257 (502)
|+.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 563 (742)
T TIGR01299 484 TKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEE 563 (742)
T ss_pred hccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhh
Confidence 000
Q ss_pred ------------------------------hhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHH
Q 010733 258 ------------------------------HKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVI 307 (502)
Q Consensus 258 ------------------------------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 307 (502)
.....+...+..++.+++.++.|+++||+|||+ .+.. ..++.++
T Consensus 564 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~-----~l~~-~~~lsai 637 (742)
T TIGR01299 564 YKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLR-----MLAG-SMVLSCI 637 (742)
T ss_pred hhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-----HHHH-HHHHHHH
Confidence 001233455667889999999999999999994 2211 1111111
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 308 PTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
+ .+ ++.+ ...... +.+..++.+++.+...+ ...+++.|.+|++.|++++|+.++...+|++++|++.|.+.+.
T Consensus 638 ~--~l-l~~~--~~s~~~-ll~~~~l~g~~~~~~~~-~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~ 710 (742)
T TIGR01299 638 S--CF-FLSF--GNSESA-MIALLCLFGGLSIAAWN-ALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI 710 (742)
T ss_pred H--HH-HHHH--HccHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11 1111 112222 23334455665555555 6788999999999999999999999999999999999988765
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=291.03 Aligned_cols=358 Identities=13% Similarity=0.103 Sum_probs=267.5
Q ss_pred hHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHH
Q 010733 5 TLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAA 84 (502)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~ 84 (502)
|..+....+ ..+........++..|.+.+++|+|.++.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~ 81 (377)
T TIGR00890 3 WYVLVGTVI-MCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLG 81 (377)
T ss_pred EEEeHHHHH-HHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHH
Confidence 343333333 3334444667889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcch
Q 010733 85 TFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGW 164 (502)
Q Consensus 85 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w 164 (502)
.+++++++|++.+++.|++.|++.+...+.....+.+++| ++|+++.++...+.++|..+++++.+.+.+. .+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~ 155 (377)
T TIGR00890 82 FTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL-----EGV 155 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc-----ccH
Confidence 9999999999999999999999999988888899999986 6799999999999999998877777777765 799
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhh-hhH
Q 010733 165 RLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFS-GSA 243 (502)
Q Consensus 165 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 243 (502)
|+.|++.+++.++..+..+++.++++.++.+++. + .+. ...+.++.++++.++......+..... ...
T Consensus 156 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (377)
T TIGR00890 156 PAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI-E---VSV-------KDYTVWEMLRTPQFWVLYLSFFLNAVSGLLL 224 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecCchhccccCc-c---cch-------hhhhHHHHHcCccHHHHHHHHHHHhHHHHHH
Confidence 9999999998888877776665544332211111 0 000 011234456666666555444433332 233
Q ss_pred HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCch
Q 010733 244 FAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPST 323 (502)
Q Consensus 244 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (502)
..+.+.+.+++|.++.+.+.......++.++++++.|++.||++||+.. .. .... ..+.... ....... .
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-----~~--~~~~-~~~~~~~-~~~~~~~-~ 294 (377)
T TIGR00890 225 IGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTM-----SI--VFGI-SAVGMAA-MLFIPML-N 294 (377)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hH--HHHH-HHHHHHH-HHHcccc-h
Confidence 4566777778899999999999999999999999999999999988521 11 1111 1111111 1111111 1
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 324 AFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 324 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
........++.+++.+...+ ....+..|.+|+++|+++.|+.+....+++.++|.+.|.+.+.. ++.
T Consensus 295 ~~~~~~~~~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~ 361 (377)
T TIGR00890 295 DVLFLATVALVFFTWGGTIS-LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI-GFE 361 (377)
T ss_pred hHHHHHHHHHHHHHhccchh-ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-chh
Confidence 22222334556666666555 56788999999999999999999999999999999999999874 554
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=294.01 Aligned_cols=374 Identities=17% Similarity=0.180 Sum_probs=274.4
Q ss_pred CcchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHH
Q 010733 2 KSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLW 81 (502)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~ 81 (502)
+++|+.+..++++++.++++....+++.|.+.+++|.++.+.|++.+++.++..+++++.|+++||+|||++++++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 87 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLF 87 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCC
Q 010733 82 AAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGI 161 (502)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~ 161 (502)
+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+.
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~----- 162 (405)
T TIGR00891 88 SAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV----- 162 (405)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred cc--hhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCC--------CCcchhhhHHHHHHhhhhhhh--hHHHH
Q 010733 162 PG--WRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKP--------RRPFWADIKDLITDAKMVIKI--PTFQI 229 (502)
Q Consensus 162 ~~--w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--~~~~~ 229 (502)
.+ ||+.|++.++..++..+.....||++++.+.++++++..+ .+..+...++.....+...++ +.+..
T Consensus 163 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (405)
T TIGR00891 163 WGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVY 242 (405)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHH
Confidence 44 9999998776665554444445554432221111100000 000000001111111111111 11111
Q ss_pred H-HHHHHhhhhhhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHH
Q 010733 230 I-VAQGVFGSFSGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVI 307 (502)
Q Consensus 230 ~-~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 307 (502)
. ....+..........+.|.+++ ++|++..+.+.+.+...++.++++++.+++.||+++|+. ..... ....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~-----~~~~~--~~~~ 315 (405)
T TIGR00891 243 LVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKA-----YVCSL--LAGQ 315 (405)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhh-----hHHHH--HHHH
Confidence 1 1222222223344567888887 689999999999999999999999999999999999852 11111 1111
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 308 PTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
. ........ ..+ .....+..++.++..+...+ ....++.|.+|++.|++++|+.+.+.++++.++|++.|.+.|.
T Consensus 316 ~-~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~ 390 (405)
T TIGR00891 316 L-LIIPVFAI--GAN-VAVLGLGLFFQQMLVQGIWG-ILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR 390 (405)
T ss_pred H-HHHHHHHh--CCc-hHHHHHHHHHHHHHHccchh-hHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11111111 122 22233333445555555454 5678889999999999999999999999999999999999998
Q ss_pred HhcCC
Q 010733 388 VYGYK 392 (502)
Q Consensus 388 ~~~~~ 392 (502)
.+.|.
T Consensus 391 ~g~~~ 395 (405)
T TIGR00891 391 LDEYG 395 (405)
T ss_pred ccccc
Confidence 64454
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=300.42 Aligned_cols=367 Identities=16% Similarity=0.187 Sum_probs=261.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHH
Q 010733 3 SETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWA 82 (502)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~ 82 (502)
++|+.+..++++++++.++....++.+|.+.+++|.++.+.+++.+.+.+++.++.++.|+++||+|||+++.++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 96 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 34677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCc
Q 010733 83 AATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIP 162 (502)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~ 162 (502)
++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+. .
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~ 171 (496)
T PRK03893 97 VGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV-----W 171 (496)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887 8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhh----HHHHHHh---------hhh--------
Q 010733 163 GWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADI----KDLITDA---------KMV-------- 221 (502)
Q Consensus 163 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---------~~~-------- 221 (502)
+||+.|++..+..++..+.....|+++++..+++++++ .++..+.. +...... ...
T Consensus 172 ~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (496)
T PRK03893 172 GWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAP---VRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNA 248 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhcccccc---chhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 99999987554433333222234443332211111100 00000000 0000000 000
Q ss_pred -----------------------hhhhHHHHHHHHHHhhhh-hhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhh
Q 010733 222 -----------------------IKIPTFQIIVAQGVFGSF-SGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGG 276 (502)
Q Consensus 222 -----------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~ 276 (502)
.+.+.........+.... .+....++|.|++ ++|++..+++.+.+...++.+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~ 328 (496)
T PRK03893 249 AIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGC 328 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 000000000000111111 1123467899996 799999999999999999999999
Q ss_pred hhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCC
Q 010733 277 LFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPE 356 (502)
Q Consensus 277 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~ 356 (502)
++.|++.||+++|+ ...... ... .+..+.+. ... ....+......+..+.......+ ...++++|.+|+
T Consensus 329 ~~~g~l~dr~g~~~-----~~~~~~--~~~-~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 397 (496)
T PRK03893 329 CVGGFLGDWLGTRK-----AYVCSL--LIS-QLLIIPVF-AIG-GANVWVLGLLLFFQQMLGQGISG-LLPKLIGGYFDT 397 (496)
T ss_pred HHHHHHHHHhcchH-----HHHHHH--HHH-HHHHHHHh-hcc-ccHHHHHHHHHHHHHHHhcccch-hhHHHHHhhCCH
Confidence 99999999999884 221111 111 11111111 111 22222222223332222222233 466788999999
Q ss_pred CCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 357 RCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 357 ~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
+.|++++|+.+....+++.++|.+.|.+.|..
T Consensus 398 ~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~ 429 (496)
T PRK03893 398 EQRAAGLGFTYNVGALGGALAPILGALIAQRL 429 (496)
T ss_pred HHhhcccchhhhhhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999874
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=291.16 Aligned_cols=359 Identities=14% Similarity=0.107 Sum_probs=245.3
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhhhcc---CCCccchHHHHHH---HHHHHHhhhhhhHhhhccCchHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGAALH---TDPTGLGSLTLFR---SIVQSFCYPLAAYLSAHHNRAHVIALG 77 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~g~~~s~~---~l~~~~~~~~~G~l~dr~G~r~~~~~~ 77 (502)
+++.+...+++++++++|...++.+.|.+.++++ .+..+.++..+.+ .++..++++++|+++||+|||+++..+
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~ 99 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS 99 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3445666778899999999999999999999985 4455444444444 444559999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHH
Q 010733 78 AFLWAAATFLVAFSSTFF--------QVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFC 149 (502)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l 149 (502)
.++++++++++++++++. .+++.|+++|++.|...+...+++.|++|+++|+++.++.+.+...|.++++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~ 179 (432)
T PRK10406 100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV 179 (432)
T ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998864 588999999999999999999999999999999999999999999998888877
Q ss_pred HHHHHhhc---cCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhH
Q 010733 150 SVLIASTS---FMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPT 226 (502)
Q Consensus 150 ~~~l~~~~---~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (502)
...+.... ....+|||++|++.+++.++...+....+|+++++.++ . ++ ..+.+++++++.
T Consensus 180 ~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~----~--~~----------~~~~~~l~~~~~ 243 (432)
T PRK10406 180 VVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA----L--KE----------AGSLKGLWRNRR 243 (432)
T ss_pred HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh----h--cc----------cccHHHHHhhHH
Confidence 65554210 00127999999998887766544433344433221100 0 00 012234445555
Q ss_pred HHHHHHHH-Hh-hhhhhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHH
Q 010733 227 FQIIVAQG-VF-GSFSGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISA 303 (502)
Q Consensus 227 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 303 (502)
.+...... +. ....+....|+|.+++ ++|++..+.+.......+...++.++.|+++||++||+ ...... .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~-----~~~~~~-~ 317 (432)
T PRK10406 244 AFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRT-----SMLCFG-S 317 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-----HHHHHH-H
Confidence 55443332 22 3335566789999987 58999989988888888888888999999999999884 221111 1
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhh-hhchhHHHHH
Q 010733 304 ASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESI-PSSFAPAVVG 382 (502)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~i~~~~~g 382 (502)
..... ...........+.....+ ..+.+..+..+...+ ....+..|.+|++.|++++|+.+..+++ .+...|.+.+
T Consensus 318 ~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~ 394 (432)
T PRK10406 318 LAALF-TVPILSALQNVSSPYAAF-GLVMCALLIVSFYTS-ISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL 394 (432)
T ss_pred HHHHH-HHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH
Confidence 11111 111111111111222111 112222222222223 4567889999999999999999988765 3455777777
Q ss_pred HHHHHH
Q 010733 383 ILAQHV 388 (502)
Q Consensus 383 ~l~~~~ 388 (502)
.+ +..
T Consensus 395 ~l-~~~ 399 (432)
T PRK10406 395 SL-KSI 399 (432)
T ss_pred HH-HHh
Confidence 44 553
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=291.02 Aligned_cols=364 Identities=15% Similarity=0.090 Sum_probs=251.3
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
+++.+....+..+...++.....+..|.+.+++|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.+++++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~ 113 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAP 113 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 34556666666777777777888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHh----hccC
Q 010733 84 ATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAS----TSFM 159 (502)
Q Consensus 84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~----~~~~ 159 (502)
+.++++++++++.+++.|+++|++.+... ....++++++|+++|++++++.....++|..+++.+.+.+.. ....
T Consensus 114 ~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 192 (476)
T PLN00028 114 AVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAP 192 (476)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999987654 456789999999999999999988888888877776655432 1011
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh
Q 010733 160 GIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF 239 (502)
Q Consensus 160 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (502)
+..+||+.|++.+++.++..++.++++++++....++..++.+.++ +...+..++.++++.++.+.+..+....
T Consensus 193 ~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (476)
T PLN00028 193 SFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPK------DSFSKVLRYGVTNYRTWILALTYGYSFG 266 (476)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCcccc------ccHHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 1258999999999998888777777765533221110000000000 0111234455666666655444333333
Q ss_pred -hhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhc
Q 010733 240 -SGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVL 317 (502)
Q Consensus 240 -~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (502)
.+...+++|.|+. ++|+++.+++.+.+...++.+++++++|+++||+++|+..+.|.........+.. ..... .
T Consensus 267 ~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~--i~~~~--~ 342 (476)
T PLN00028 267 VELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGG--VFCIW--L 342 (476)
T ss_pred HHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHH--HHHHH--h
Confidence 3455568898887 5799999999999999999999999999999999987543323332222211111 11111 1
Q ss_pred CCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHH
Q 010733 318 PDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVV 381 (502)
Q Consensus 318 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~ 381 (502)
...++.+ .....+++.+++.+.... ..+++..+..| +.+|++.|+.+..+.+|+.++|.+.
T Consensus 343 ~~~~~~~-~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~ 403 (476)
T PLN00028 343 GRANSLG-AAIVVMILFSIFVQAACG-ATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLF 403 (476)
T ss_pred cccchHH-HHHHHHHHHHHHHHHhhh-hhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHH
Confidence 2222222 222333444444443333 34555566554 6899999998766555555555443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=297.30 Aligned_cols=373 Identities=13% Similarity=0.165 Sum_probs=258.4
Q ss_pred hHHHHHHHHHHHHHHHhhccchhhHHHHhhhc--------cCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHH
Q 010733 5 TLTLVLVNFAAIMERADESMLPGVYKEVGAAL--------HTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIAL 76 (502)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~ 76 (502)
.+...+..++.+.++++...+++..|.+++++ +.++.+.+++.+++.++..++++++|+++||+|||+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~ 90 (479)
T PRK10077 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI 90 (479)
T ss_pred HHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 45667778888999999999999999999988 8888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHh
Q 010733 77 GAFLWAAATFLVAFS------------STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSV 144 (502)
Q Consensus 77 ~~~l~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 144 (502)
+.+++.++.++++++ ++++.++++|+++|++.|...+...++++|++|+++|++++++.+.+..+|.+
T Consensus 91 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~ 170 (479)
T PRK10077 91 AAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQL 170 (479)
T ss_pred HHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHH
Confidence 999999998888763 23567889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc---cCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCC-------CCCcchhhhHHH
Q 010733 145 LGGFCSVLIASTS---FMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHK-------PRRPFWADIKDL 214 (502)
Q Consensus 145 ~g~~l~~~l~~~~---~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 214 (502)
+++.++..+.... ..+..+||++|++.+++.++..+..+++||+|++...+++.++.+ ..++..+..++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (479)
T PRK10077 171 VVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEI 250 (479)
T ss_pred HHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHH
Confidence 9988877664311 112379999999998888887766666787776533222211100 000000001111
Q ss_pred HHHhh-------hhhhhhHHHHHHHH---HHhhhh-hhhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHh
Q 010733 215 ITDAK-------MVIKIPTFQIIVAQ---GVFGSF-SGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMG 283 (502)
Q Consensus 215 ~~~~~-------~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~ 283 (502)
....+ ..+........... .+.... .+....+.|.+.++.|.+.....+.....++..+++.++.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~ 330 (479)
T PRK10077 251 KHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTV 330 (479)
T ss_pred HHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11100 00000000000000 000011 11233467888888899887777777788889999999999999
Q ss_pred hhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhH
Q 010733 284 DILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIY 363 (502)
Q Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 363 (502)
||++||+ .... ......+....+......... .......++..+.+.+....+..+.+++|.+|++.|++++
T Consensus 331 dr~g~r~-----~~i~-~~~~~~v~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 402 (479)
T PRK10077 331 DKFGRKP-----LQII-GALGMAIGMFSLGTAFYTQAP--GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKAL 402 (479)
T ss_pred HHhcChH-----HHHH-hHHHHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHH
Confidence 9999884 2211 111111211111111111111 1122233344444444433236789999999999999999
Q ss_pred hHHHhhhhhhhchhHHHHHHHH
Q 010733 364 ALDQSFESIPSSFAPAVVGILA 385 (502)
Q Consensus 364 g~~~~~~~~~~~i~~~~~g~l~ 385 (502)
|+.+..+++++++++.+.+.+.
T Consensus 403 g~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 403 AIAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999988877665
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=292.72 Aligned_cols=363 Identities=17% Similarity=0.170 Sum_probs=272.1
Q ss_pred HHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhH
Q 010733 15 AIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTF 94 (502)
Q Consensus 15 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~ 94 (502)
+++..+++..++...|.+.+++|.++.+.|++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 82 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY 82 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHH
Q 010733 95 FQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLI 174 (502)
Q Consensus 95 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~ 174 (502)
+.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|.++++.+++.+.+. .+||+.|++.+++
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~~~~~~~~ 157 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH-----FSWQWAFIIEGVL 157 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh-----CCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887 8999999999888
Q ss_pred HHHHHHHHHhhccCCcccccC-CCccCC---CC---CCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhh-hhHHHh
Q 010733 175 SVIVGVLVHVYANDPRCLAKD-GTKIDH---KP---RRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFS-GSAFAF 246 (502)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 246 (502)
.++..++.++..++++..++. .++++. +. +.+..++.+......++.++++.++......+..... .....+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (399)
T TIGR00893 158 GIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTW 237 (399)
T ss_pred HHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 887777666544433221111 000000 00 0000000011122344566777777666555554443 455568
Q ss_pred HHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHH
Q 010733 247 AAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAF 325 (502)
Q Consensus 247 ~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (502)
.|.+++ .+|.++.+.++......++.+++.++.+++.||+++|+.. .........................+ ...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 313 (399)
T TIGR00893 238 FPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKS---LVFARKTAIIAGLVLSLLMFATNYVN-IPY 313 (399)
T ss_pred HHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---hhHHHHHHHHHHHHHHHHHHHhccch-hHH
Confidence 899987 5899999999999999999999999999999999998521 11111111111111111111122112 222
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 326 LHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 326 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
.......+.+++.+ ..+ ...++..|..|++.|++++|+.+.+..+++.++|.+.|.+.|..
T Consensus 314 ~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~ 374 (399)
T TIGR00893 314 AALALVALGFFGLG-AGA-IGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT 374 (399)
T ss_pred HHHHHHHHHHhchh-hhh-HHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC
Confidence 22222333333333 444 68899999999999999999999999999999999999999874
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=301.78 Aligned_cols=375 Identities=14% Similarity=0.082 Sum_probs=275.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhccchhhHHHHhh----------------------hccCCCccchHHHHHHHHHHHHhhh
Q 010733 2 KSETLTLVLVNFAAIMERADESMLPGVYKEVGA----------------------ALHTDPTGLGSLTLFRSIVQSFCYP 59 (502)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~s~~~~g~~~s~~~l~~~~~~~ 59 (502)
+.||.+..++++++.+.+.|+..++...+.+.+ |++++..+.|++.+.+.+++.++++
T Consensus 15 ~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~ 94 (465)
T TIGR00894 15 SFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQI 94 (465)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHc
Confidence 346778888888899999999999999888877 7899999999999999999999999
Q ss_pred hhhHhhhccCchHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHH
Q 010733 60 LAAYLSAHHNRAHVIALGAFLWAAATFLVAFS--STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQL 137 (502)
Q Consensus 60 ~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 137 (502)
+.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.||+|+++|++++++...
T Consensus 95 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 174 (465)
T TIGR00894 95 PVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTS 174 (465)
T ss_pred chHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999887654 5688899999999999999999999999999999999999999999
Q ss_pred HHhhhHhHHHHHHHHHHhhccCCCc-chhHHHHHHHHHHHHHHHHHHhhccC-CcccccCCCccCC----C-CCCcchhh
Q 010733 138 TGYLGSVLGGFCSVLIASTSFMGIP-GWRLAFHLVGLISVIVGVLVHVYAND-PRCLAKDGTKIDH----K-PRRPFWAD 210 (502)
Q Consensus 138 ~~~~G~~~g~~l~~~l~~~~~~~~~-~w~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~-~~~~~~~~ 210 (502)
+..+|.++++++++.+.+. . +||+.|++.+++.++..++.+.++++ |+..+..++.+++ . +.+....+
T Consensus 175 ~~~~g~~i~~~l~~~l~~~-----~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~ 249 (465)
T TIGR00894 175 GFQLGTFIFLPISGWLCES-----WGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTR 249 (465)
T ss_pred HHHHHHHHHHHHHHHHHhc-----cCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCC
Confidence 9999999999999998875 5 99999999999888887777665544 3222111110000 0 00000000
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhh
Q 010733 211 IKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQ 288 (502)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 288 (502)
....++++++++.++...+..+.... .+...+|+|.|++ .+|++..+.++..+...++.+++.++.|+++||+++
T Consensus 250 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~ 326 (465)
T TIGR00894 250 ---QSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKS 326 (465)
T ss_pred ---CCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01134567777777776665555544 4466679999997 589999999999999999999999999999999887
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHh
Q 010733 289 RLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQS 368 (502)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 368 (502)
|+....+..................+......... ....+++.+.+.+.+...+ .......|..| +.+|.+.|+.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~ 403 (465)
T TIGR00894 327 SKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAF-YLTIIILTLANAVSSGPLA-GVLINSLDLAP-RFLGFIKGITGL 403 (465)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHHhhhhhh-hhhhchhhcCh-hHHHHHHHHHHH
Confidence 65443222211111111111111111111111122 2222333344444444444 34455667776 479999999999
Q ss_pred hhhhhhchhHHHHHHHHHH
Q 010733 369 FESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 369 ~~~~~~~i~~~~~g~l~~~ 387 (502)
.+.+++.++|.+.|.+.+.
T Consensus 404 ~~~l~~~i~p~l~g~~~~~ 422 (465)
T TIGR00894 404 PGFIGGLIASTLAGNILSQ 422 (465)
T ss_pred HHHHHHHHHHHhhheeeCC
Confidence 9999999999999988764
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=289.17 Aligned_cols=372 Identities=14% Similarity=0.111 Sum_probs=258.7
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
+|.++...++.....+.++..++...|.+.++ |.|+.+.|++.+.+.+++.+++++.|+++||+|||++++++.++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i 105 (452)
T PRK11273 27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 105 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHH
Confidence 35555555666666777777788888999988 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh----hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHh-HHHHHHHHHHhhcc
Q 010733 84 ATFLVAFSS----TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSV-LGGFCSVLIASTSF 158 (502)
Q Consensus 84 ~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~l~~~l~~~~~ 158 (502)
+.+++++++ +++.+++.|++.|++.+...+.....+.+++|+++|++++++++.+.++|.. .+++++..+...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-- 183 (452)
T PRK11273 106 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF-- 183 (452)
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--
Confidence 999988764 7888999999999999998888888999999999999999999999999874 455544444333
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHh-hccCCcccccCCCc---cCCCC----CCcchhhhHHHHHHhhhhhhhhHHHHH
Q 010733 159 MGIPGWRLAFHLVGLISVIVGVLVHV-YANDPRCLAKDGTK---IDHKP----RRPFWADIKDLITDAKMVIKIPTFQII 230 (502)
Q Consensus 159 ~~~~~w~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (502)
.+||+.|++.+++.++..++.++ .+++|+....+++. ++.++ .+....+.++.. .+.+++++.++..
T Consensus 184 ---~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 258 (452)
T PRK11273 184 ---NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIF--MQYVLPNKLLWYI 258 (452)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHH--HHHHHcChHHHHH
Confidence 59999999998887776665555 44443321111000 00000 000000112211 1246677887776
Q ss_pred HHHHHhhhh-hhhHHHhHHHHHHH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHH
Q 010733 231 VAQGVFGSF-SGSAFAFAAMWLEL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIP 308 (502)
Q Consensus 231 ~~~~~~~~~-~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 308 (502)
.+..++... .+....|+|.|+++ .|++..+++.......++.+++.++.|+++||+++++. +...........+
T Consensus 259 ~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~---~~~~~~~~~l~~~- 334 (452)
T PRK11273 259 AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR---GATGVFFMTLVTI- 334 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc---chHHHHHHHHHHH-
Confidence 555544433 45666799999985 79999999999988999999999999999999954321 1111111111111
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhch-hHHHHHHHHHH
Q 010733 309 TAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSF-APAVVGILAQH 387 (502)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i-~~~~~g~l~~~ 387 (502)
....+. .......+ .....++..|........ ....+..|.+|++.+|+++|+.+...++++.+ +|.+.|.+.|.
T Consensus 335 -~~~~~~-~~~~~~~~-~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~ 410 (452)
T PRK11273 335 -ATIVYW-LNPAGNPT-VDMACMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 410 (452)
T ss_pred -HHHHHH-HhcccChH-HHHHHHHHHHHHHHhHHH-HHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 111111 11111222 222334444443322222 23456779999999999999999999988765 79999999998
Q ss_pred HhcCC
Q 010733 388 VYGYK 392 (502)
Q Consensus 388 ~~~~~ 392 (502)
. ++.
T Consensus 411 ~-g~~ 414 (452)
T PRK11273 411 F-GWD 414 (452)
T ss_pred h-cch
Confidence 5 554
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=277.91 Aligned_cols=349 Identities=13% Similarity=0.124 Sum_probs=264.9
Q ss_pred CcchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHH
Q 010733 2 KSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLW 81 (502)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~ 81 (502)
|+.|+.+..+.++.+..........+.+|.+.+++|+++++.|+..+++.++..+++++.|++.||+|||+++..+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~ 95 (394)
T PRK10213 16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLL 95 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence 34566666666666666666666667789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCC
Q 010733 82 AAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGI 161 (502)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~ 161 (502)
+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++.+.+.
T Consensus 96 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~----- 170 (394)
T PRK10213 96 TLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL----- 170 (394)
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cchhHHHHHHHHHHHHHHHHHHh-hccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-
Q 010733 162 PGWRLAFHLVGLISVIVGVLVHV-YANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF- 239 (502)
Q Consensus 162 ~~w~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 239 (502)
.+||+.|++.+++.+++.+.... .|+.+++ ++ +.. +..++.+++|.++...+..+....
T Consensus 171 ~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~----~~--------~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~ 231 (394)
T PRK10213 171 IGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE----PS--------HQK-------QNTFRLLQRPGVMAGMIAIFMSFAG 231 (394)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc----cc--------cch-------hHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 89999999988777665544443 3332210 00 000 112345667776665444333322
Q ss_pred hhhHHHhH-HHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcC
Q 010733 240 SGSAFAFA-AMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLP 318 (502)
Q Consensus 240 ~~~~~~~~-~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (502)
.+....+. |.+.+++|+++.+.+......+++.+++.++.+++.||.+++. ... ..... ......+....
T Consensus 232 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~------l~~-~~~~~--~~~~~~l~~~~ 302 (394)
T PRK10213 232 QFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLA------LAG-APLVL--AVSALVLTLWG 302 (394)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhH------HHH-HHHHH--HHHHHHHHHHh
Confidence 33444554 7777788999999999999999999999999999999854331 111 11111 11111111111
Q ss_pred CCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 319 DDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
++ .+......++.|++.+...+ ...+.+++..| +++++..++.....+++..+||.+.|.+.|..
T Consensus 303 --~~-~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~ 367 (394)
T PRK10213 303 --SD-KIVATGVAIIWGLTFALVPV-GWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNI 367 (394)
T ss_pred --hh-HHHHHHHHHHHHHHHHhhhH-HHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22 23344556677888877777 66777888887 55778888888888999999999999999974
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=283.72 Aligned_cols=365 Identities=14% Similarity=0.126 Sum_probs=252.5
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHH-Hhhhc--cCCCccchHHH-----HHHHHHHHHhhhhhhHhhhccCchHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKE-VGAAL--HTDPTGLGSLT-----LFRSIVQSFCYPLAAYLSAHHNRAHVIA 75 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~s~~~~g~~~-----s~~~l~~~~~~~~~G~l~dr~G~r~~~~ 75 (502)
+++.+...+++++++++|...++.+.|. +.+++ +.++. .+++. ++.+++..+++++.|+++||+|||+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~ 98 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence 4567788888999999999999988774 55565 66665 56654 3455667788999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHH
Q 010733 76 LGAFLWAAATFLVAFSSTFF--------QVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGG 147 (502)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~ 147 (502)
.+.+++++++++++++++++ .++++|+++|++.|..++...+++.|++|+++|++..+..+.+..+|.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~ 178 (438)
T PRK09952 99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST 178 (438)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 5888999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhcc---CCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhh
Q 010733 148 FCSVLIASTSF---MGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKI 224 (502)
Q Consensus 148 ~l~~~l~~~~~---~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (502)
.+...+..... ...++||++|++.+++.++...+....+|+|++.+.+++.++.+ .+.. ..+.++++
T Consensus 179 ~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~-~~~~---------~~~~l~~~ 248 (438)
T PRK09952 179 GLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAK-KRIP---------VIEALLRH 248 (438)
T ss_pred HHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccccc-ccCC---------HHHHHHHc
Confidence 88776653100 01279999999988776554333333455544322211111100 0000 01123334
Q ss_pred hHHHHHH-HHHH-hhhhhhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHH
Q 010733 225 PTFQIIV-AQGV-FGSFSGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQI 301 (502)
Q Consensus 225 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 301 (502)
+..+... ...+ .....+....|.|.|++ ++|++...........++..+++.++.|+++||++||+ ......
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~-----~~~~~~ 323 (438)
T PRK09952 249 PGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRR-----VYITGA 323 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-----HHHHHH
Confidence 4333332 2222 23334566678999887 58888876656666667778888999999999999984 222211
Q ss_pred HHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhh-hhhhchhHHH
Q 010733 302 SAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFE-SIPSSFAPAV 380 (502)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~~~~i~~~~ 380 (502)
................ .+....+....++.+++.+...+ ..+++..|.+|++.|+++.|+.+... .+++.++|.+
T Consensus 324 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i 399 (438)
T PRK09952 324 --LIGTLSAFPFFMALEA-QSIFWIVFFSIMLANIAHDMVVC-VQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFI 399 (438)
T ss_pred --HHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHH
Confidence 1111111111111111 12222233344455666665555 56889999999999999999976665 4889999999
Q ss_pred HHHHHHHH
Q 010733 381 VGILAQHV 388 (502)
Q Consensus 381 ~g~l~~~~ 388 (502)
.|++.+..
T Consensus 400 ~g~l~~~~ 407 (438)
T PRK09952 400 AAALVTYF 407 (438)
T ss_pred HHHHHHhc
Confidence 99999864
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=284.16 Aligned_cols=363 Identities=15% Similarity=0.179 Sum_probs=248.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHH-HHHH-----HHHHHhhhhhhHhhhccCchHHHHH
Q 010733 3 SETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLT-LFRS-----IVQSFCYPLAAYLSAHHNRAHVIAL 76 (502)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~-s~~~-----l~~~~~~~~~G~l~dr~G~r~~~~~ 76 (502)
+|++....++++.+++++|+..++...|.+.+|++.++.+.+.+. +... ++..+++++.|+++||+|||++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~ 91 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV 91 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence 467788888999999999999999999999999999888876543 3322 2224678999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHH
Q 010733 77 GAFLWAAATFLVAFSSTFF--------QVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGF 148 (502)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~ 148 (502)
+.+++.+++++++++++++ .++++|+++|++.+...+....++.|++|+++|++++++...+.++|..+++.
T Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~ 171 (434)
T PRK15075 92 TLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAAL 171 (434)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 46889999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHhhcc---CCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhh
Q 010733 149 CSVLIASTSF---MGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIP 225 (502)
Q Consensus 149 l~~~l~~~~~---~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (502)
+++.+..... .+..+||++|++..+...+. ......++|++....++ .+.++ ++.. +...+++
T Consensus 172 ~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~-------~~~~~---~~~~---~~~~~~~ 237 (434)
T PRK15075 172 LGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFI-FLIRRSLEETEEFLARK-------HRPSM---REIF---RSLAANW 237 (434)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHHhcCCCHHHHHhh-------hcccc---ccHH---HHHHHhH
Confidence 8877642100 01279999999854432221 11111122211000000 00001 1111 1112222
Q ss_pred HHHHH-HHHHH-hhhhhhhHHHhHHHHHHH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHH
Q 010733 226 TFQII-VAQGV-FGSFSGSAFAFAAMWLEL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQIS 302 (502)
Q Consensus 226 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 302 (502)
..+.. ....+ .....+....|.|.|+++ +|++..++++......++.+++.++.|+++||++||+ .......
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~-----~~~~~~~ 312 (434)
T PRK15075 238 RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP-----VLIAFTV 312 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----HHHHHHH
Confidence 22221 22222 222234566789999985 8999999999888899999999999999999999884 2222111
Q ss_pred HHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhh-hhchhHHHH
Q 010733 303 AASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESI-PSSFAPAVV 381 (502)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~i~~~~~ 381 (502)
. . ..............+... ......++.+++.+...+ ....+..|.+|++.|+++.|+.+.+... ++.++|.+.
T Consensus 313 ~-~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~-~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~ 388 (434)
T PRK15075 313 L-A-ILTAYPALSWLVAAPSFA-RMLAVELWLSFLYGSYNG-AMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAIS 388 (434)
T ss_pred H-H-HHHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHHHHh-hHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHH
Confidence 1 1 111111111111112211 122223334455555444 4567889999999999999997665554 588899999
Q ss_pred HHHHHHH
Q 010733 382 GILAQHV 388 (502)
Q Consensus 382 g~l~~~~ 388 (502)
|++.|..
T Consensus 389 g~i~~~~ 395 (434)
T PRK15075 389 TWLIHVT 395 (434)
T ss_pred HHHHHhc
Confidence 9999985
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=272.28 Aligned_cols=359 Identities=13% Similarity=0.041 Sum_probs=266.3
Q ss_pred hHHHHHHHHHHHHHHHhhccchhhHHHHhh-hccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 5 TLTLVLVNFAAIMERADESMLPGVYKEVGA-ALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
++.+.+..++.++.+....+++++.+.+.+ ++|+|++|.+++.+++.+++.++.++.|++.||+|.|+++.++.++.++
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i 112 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII 112 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 477888889999999999999999999876 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh-----hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHh---
Q 010733 84 ATFLVAFS-----STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAS--- 155 (502)
Q Consensus 84 ~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~--- 155 (502)
.+++.+++ +|++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...+..
T Consensus 113 ~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l 191 (462)
T PRK15034 113 PCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPV 191 (462)
T ss_pred HHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999987 8999999999999998 77889999999999999999999999987777888777666655431
Q ss_pred --h-cc-------CCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhh
Q 010733 156 --T-SF-------MGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIP 225 (502)
Q Consensus 156 --~-~~-------~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (502)
. +. .+..+||.++++..++.++..++.+++.++++.. +...++.+..+|+|
T Consensus 192 ~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~-------------------~~~~~~~~~vlk~~ 252 (462)
T PRK15034 192 FAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS-------------------RASIADQLPVLQRL 252 (462)
T ss_pred HHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-------------------ccCHHHHHHHhCCC
Confidence 1 00 0124589999898888888877777765443210 11124455678888
Q ss_pred HHHHHHHHHHhhhhhhh-HHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHH
Q 010733 226 TFQIIVAQGVFGSFSGS-AFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAA 304 (502)
Q Consensus 226 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 304 (502)
..|.+....++.+..|. ...++|.|+++ .++............+...+.++++|+++||+|+++ ....... .
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~-----vl~~~~i-~ 325 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR-----VTLINFI-F 325 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH-----HHHHHHH-H
Confidence 88877777666666664 44589999875 333333333344456788899999999999999985 2222111 1
Q ss_pred HHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCC---------------------CCchhh
Q 010733 305 SVIPTAAVLLLVLPDD-PSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPE---------------------RCRTSI 362 (502)
Q Consensus 305 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~---------------------~~~~~~ 362 (502)
..+. ....+...+.. ......+...++.+.++.|.... ..+-++.+.+|+ ++.|.+
T Consensus 326 ~~i~-~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gng-svfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 403 (462)
T PRK15034 326 MAIF-SALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSG-STFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAA 403 (462)
T ss_pred HHHH-HHHHHHHhccccccHHHHHHHHHHHHHHHhcccch-HHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHH
Confidence 1111 11112222222 12333344444444555565555 556677777764 157889
Q ss_pred HhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 363 YALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 363 ~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
.|+....+.+|+++.|.+.|...+.++++.
T Consensus 404 ~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~ 433 (462)
T PRK15034 404 LGFISAIGAVGGFFIPQAFGMSLNMTGSPV 433 (462)
T ss_pred HHHHHHHHHcccchhhHHHHHHHHHcCCcH
Confidence 999999999999999999999999876654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=279.05 Aligned_cols=350 Identities=14% Similarity=0.156 Sum_probs=255.0
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAAT 85 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~ 85 (502)
+.+..+.+..+..........+.+|.+++|+|.+.++.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 82 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN 82 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence 45667777888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchh
Q 010733 86 FLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWR 165 (502)
Q Consensus 86 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~ 165 (502)
+++++++|++.+++.|+++|++.+...+....++.+++|+++|++++++...+..+|..+++++++.+.+. .+||
T Consensus 83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-----~gwr 157 (382)
T PRK10091 83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE-----FSWR 157 (382)
T ss_pred HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh-----ccHH
Confidence 99999999999999999999999998999999999999999999999999999999999999999999887 8999
Q ss_pred HHHHHHHHHHHHHHHHHHh-hccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhh-hhhhH
Q 010733 166 LAFHLVGLISVIVGVLVHV-YANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGS-FSGSA 243 (502)
Q Consensus 166 ~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 243 (502)
+.|++.+++.++..+..++ .|+.++ + ++ .+. ++. .+.++++..+......++.. ..+..
T Consensus 158 ~~f~~~~~~~~~~~~~~~~~lp~~~~-~----~~------~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (382)
T PRK10091 158 YTFLLIAVFNIAVLASIYFWVPDIRD-E----AK------GGL----REQ----FHFLRSPAPWLIFAATMFGNAGVFAW 218 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCc-c----cc------cCH----HHH----HHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 9999998887776665544 433221 0 00 000 111 12334454544433333322 22333
Q ss_pred HHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 010733 244 FAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPS 322 (502)
Q Consensus 244 ~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (502)
..+.+.+++ .+|+++.+.+++.....++.++++++.+++.||+++|+. ... ..... .+..+.+.... +.
T Consensus 219 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~-----~~~-~~~~~--~i~~~~~~~~~--~~ 288 (382)
T PRK10091 219 FSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI-----AAV-TDFII--VLALLMLFFFG--GM 288 (382)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH-----HHH-HHHHH--HHHHHHHHHHH--hh
Confidence 456666666 589999999999999999999999999999999998842 111 11111 11111111111 11
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 323 TAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
.+. ..+..+..+++.....++.......+..|++.++.+ ..+....+|..+||.+.|.+.|..++|.
T Consensus 289 ~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~ 355 (382)
T PRK10091 289 KTA-SLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYN 355 (382)
T ss_pred HHH-HHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcc
Confidence 222 223333444443333331223344444444444443 4467788999999999999999766665
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=277.44 Aligned_cols=355 Identities=12% Similarity=0.082 Sum_probs=266.9
Q ss_pred CcchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHH
Q 010733 2 KSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLW 81 (502)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~ 81 (502)
.++++..+..++++++.+.+....++.+|.+.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~ 82 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45677888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCC
Q 010733 82 AAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGI 161 (502)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~ 161 (502)
+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++++..+....+|..++|.+.+.+....
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---- 158 (394)
T PRK03699 83 ILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS---- 158 (394)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988876421
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhh-hh
Q 010733 162 PGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGS-FS 240 (502)
Q Consensus 162 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 240 (502)
.+||+.|++.+++.++..++.++ .+.|+.++++ ++++. +. .+... ++.++......++.. ..
T Consensus 159 ~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~~~~-~~~~~----~~----------~~~~~-~~~~~~~~~~~~~~~~~~ 221 (394)
T PRK03699 159 IEWYWVYACIGLVYVAIFILTLF-SEFPALGKHA-PKADK----PV----------AKEKW-GIGVLFLAIAALLYILAQ 221 (394)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHh-cCCccccccC-ccccC----cc----------ccccC-ChHHHHHHHHHHHHHHHH
Confidence 69999999988877766554443 2222211111 00000 00 01111 233333333333322 33
Q ss_pred hhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCC
Q 010733 241 GSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPD 319 (502)
Q Consensus 241 ~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (502)
+....|+|.|++ ++|+|+.+++.+.+...++..+++++.+++.||+++|+. ..... .+.. .........
T Consensus 222 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~-----l~~~~--~~~~--~~~~~~~~~- 291 (394)
T PRK03699 222 LTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRI-----LTVLA--GLAL--VLMYLFVNT- 291 (394)
T ss_pred HHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhH-----HHHHH--HHHH--HHHHHHHHc-
Confidence 466679999997 579999999999999999999999999999999999852 21111 1111 111111111
Q ss_pred CCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 320 DPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
++... .....+..|++.+...+ ...+...+..| +.+++..+......++|+.++|.+.|.+.|.. ++.
T Consensus 292 -~~~~~-~~~~~~~~G~~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~-g~~ 359 (394)
T PRK03699 292 -DDPSH-LLYAILGLGFFSSAIYT-TIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHF-GLQ 359 (394)
T ss_pred -CCchH-HHHHHHHHHHHHHHHHH-HHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-Cch
Confidence 12222 23345566776665555 45566667665 44678889999999999999999999999984 443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=276.77 Aligned_cols=359 Identities=13% Similarity=0.043 Sum_probs=270.0
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
.+.....+.+..+...++...+.+.+|.+.+++|.|+.+.++..+.+.+++.+++++.|+++||+|||+++..+.++.++
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 90 (406)
T PRK15402 11 ALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL 90 (406)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 34555666666777788888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcc
Q 010733 84 ATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG 163 (502)
Q Consensus 84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~ 163 (502)
+.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|.+.+++......+|..++|.+++.+.++ .+
T Consensus 91 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-----~~ 165 (406)
T PRK15402 91 TCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV-----LP 165 (406)
T ss_pred HHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cC
Confidence 9999999999999999999999999988899999999999999999999999999999999999999999887 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhh
Q 010733 164 WRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGS 242 (502)
Q Consensus 164 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 242 (502)
||+.|++.++..++..+..++..++++...++ +.. .++..++.+.++++|.++.......+... ...
T Consensus 166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (406)
T PRK15402 166 WRGMFVLFAALAALSFFGLWRAMPETAGRVGE---------KLS---LKELGRDYKLVLKNRRFVAGALALGLVSLPLLA 233 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCCccccc---------ccc---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 99999998888877766555433322211100 001 12334455677788887765554443333 234
Q ss_pred HHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 010733 243 AFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDP 321 (502)
Q Consensus 243 ~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (502)
...+.|.+++ ++|+++.+.+.......++.+++.++.+++.||+++|+ ...... ....+........... ..
T Consensus 234 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~-----~~~~~~-~~~~~g~~~~~~~~~~-~~ 306 (406)
T PRK15402 234 WIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRS-----LIRMGL-WPMVAGLLLAALATVI-SS 306 (406)
T ss_pred HHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-----HHHHHH-HHHHHHHHHHHHHHHc-cc
Confidence 4456788876 68999999998888888889999999999999999884 221111 1111111111111111 12
Q ss_pred chHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 322 STAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
..........++.|++.+...+ ......... +++++|++.++.+..+.++..+++.+.+.+.+..
T Consensus 307 ~~~~~~~~~~~~~g~g~~~~~~-~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 371 (406)
T PRK15402 307 HAYLWLTAGLSLYAFGIGLANA-GLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG 371 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHhh-hHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 2233344556667777776655 344444333 4588999999999999999999999999887763
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=284.60 Aligned_cols=371 Identities=15% Similarity=0.206 Sum_probs=280.5
Q ss_pred hHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHH
Q 010733 5 TLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAA 84 (502)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~ 84 (502)
++.++.++++.++..++...+++.+|.+.+++|.++.+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 34567888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcch
Q 010733 85 TFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGW 164 (502)
Q Consensus 85 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w 164 (502)
.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.++ .+|
T Consensus 89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~-----~gw 163 (471)
T PRK10504 89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY-----ASW 163 (471)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh-----ccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 899
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCcccccCCCcc---------------CCCCCCcchhhh------------------
Q 010733 165 RLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKI---------------DHKPRRPFWADI------------------ 211 (502)
Q Consensus 165 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~------------------ 211 (502)
|+.|++......+..+......++.+....+.+.. ..+.....+...
T Consensus 164 ~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (471)
T PRK10504 164 HWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLL 243 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999988777766666555433322111110000 000000001000
Q ss_pred HHH----HHHhhhhhhhhHHHHHHHHHHhhhhhhhH-HHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhh
Q 010733 212 KDL----ITDAKMVIKIPTFQIIVAQGVFGSFSGSA-FAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDI 285 (502)
Q Consensus 212 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 285 (502)
++. .....++++++.+.......++....+.. ..+.|.|++ .+|.++.+.++...+..++.+++.++.+++.||
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r 323 (471)
T PRK10504 244 HARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR 323 (471)
T ss_pred HHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00012467788887776666655554433 356888988 589999999999999999999999999999999
Q ss_pred hhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhH
Q 010733 286 LAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYAL 365 (502)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 365 (502)
+++|+ ...... .+ ..+....+......+ ..+......++.|++.+...+ ....+..+..|++.++.++|+
T Consensus 324 ~g~~~-----~~~~~~--~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~ 393 (471)
T PRK10504 324 FGYRR-----VLVATT--LG-LALVSLLFMLVALLG-WYYLLPFVLFLQGMVNSTRFS-SMNTLTLKDLPDNLASSGNSL 393 (471)
T ss_pred cCchH-----HHHHHH--HH-HHHHHHHHHhccccc-cHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHhccchHHH
Confidence 99884 221111 11 111111122222222 222233345556666666665 567888889999999999999
Q ss_pred HHhhhhhhhchhHHHHHHHHHHHhcC
Q 010733 366 DQSFESIPSSFAPAVVGILAQHVYGY 391 (502)
Q Consensus 366 ~~~~~~~~~~i~~~~~g~l~~~~~~~ 391 (502)
.++...+|..+++.+.|.+.+.. ++
T Consensus 394 ~~~~~~~g~~ig~~i~g~ll~~~-g~ 418 (471)
T PRK10504 394 LSMIMQLSMSIGVTIAGLLLGLF-GQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hh
Confidence 99999999999999999999985 44
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=288.52 Aligned_cols=375 Identities=12% Similarity=0.042 Sum_probs=256.7
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhhhc-----cCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGAAL-----HTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGA 78 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~ 78 (502)
+++++.++.++.+.++++....+.+.|.+.+++ +.+..+.+++.+.+.+++.++++++|+++||+|||+++.++.
T Consensus 14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~ 93 (502)
T TIGR00887 14 HFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL 93 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 456777888889999999999999999887753 334557789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhh------HHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHH
Q 010733 79 FLWAAATFLVAFSST------FFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVL 152 (502)
Q Consensus 79 ~l~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~ 152 (502)
++..++.++++++++ ++.++++|+++|++.|...+....++.|++|+++|++++++.+....+|.++++.++..
T Consensus 94 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~ 173 (502)
T TIGR00887 94 IIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI 173 (502)
T ss_pred HHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876 78999999999999999999999999999999999999999999999999999999877
Q ss_pred HHhhcc------------------CCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccC------------C-
Q 010733 153 IASTSF------------------MGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKID------------H- 201 (502)
Q Consensus 153 l~~~~~------------------~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~- 201 (502)
+..... ....+||++|.+.+++.++..+..+++||+|++...++++++ +
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~ 253 (502)
T TIGR00887 174 VLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKI 253 (502)
T ss_pred HHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcccc
Confidence 653110 012479999999988888877777789999987433222111 0
Q ss_pred CCCCcch----hhhHHHHHHhhhhhh----hhHHHH---HHHHHH-hhhhhhhHHHhHHHHHHHhCCChhHHHH------
Q 010733 202 KPRRPFW----ADIKDLITDAKMVIK----IPTFQI---IVAQGV-FGSFSGSAFAFAAMWLELIGFSHKLTAF------ 263 (502)
Q Consensus 202 ~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~g~s~~~~~~------ 263 (502)
+.+.+.. ++.+.....++++++ ++.... .....+ .....|+...|.|.++++.|++...++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~ 333 (502)
T TIGR00887 254 EAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEEL 333 (502)
T ss_pred ccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHH
Confidence 0000000 000000012233332 111111 111112 2222345556789999888886542211
Q ss_pred ------HHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 010733 264 ------LMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLC 337 (502)
Q Consensus 264 ------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 337 (502)
......++.+++.++.++++||+|||+ .... ......+....+.+.... ...... .....+...++
T Consensus 334 ~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~-----~l~~-~~~~~~~~~~~l~~~~~~-~~~~~~-~~~~~~~~~~~ 405 (502)
T TIGR00887 334 YKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKP-----IQLM-GFFILTVLFFVLGFAYNH-LSTHGF-LAIYVLAQFFA 405 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchh-----HHHH-HHHHHHHHHHHHHHHHHh-cchhHH-HHHHHHHHHHH
Confidence 223344566778889999999999995 2222 111111111111111111 111111 11111111221
Q ss_pred hhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 338 MSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 338 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
.....+ ..+.+..|.+|++.|+++.|+.+.+++++++++|.+.+.+.+.
T Consensus 406 ~~~~~~-~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 454 (502)
T TIGR00887 406 NFGPNA-TTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH 454 (502)
T ss_pred hcCCCc-hhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence 112223 5677889999999999999999999999999999999999885
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=276.76 Aligned_cols=353 Identities=17% Similarity=0.161 Sum_probs=276.6
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 010733 11 VNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAF 90 (502)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~ 90 (502)
+.++.++..+......+.+|.+.++++.++.+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 83 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF 83 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hh-----hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchh
Q 010733 91 SS-----TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWR 165 (502)
Q Consensus 91 ~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~ 165 (502)
++ +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+. .+||
T Consensus 84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-----~g~~ 158 (365)
T TIGR00900 84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT-----LGIK 158 (365)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----hhHH
Confidence 88 9999999999999999999999999999999999999999999999999999999999999987 8999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhh-hhHH
Q 010733 166 LAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFS-GSAF 244 (502)
Q Consensus 166 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 244 (502)
+.|++.++..++..+..+...++++. +++++ +.+++..++..+..+.++++|.++......+..... ....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (365)
T TIGR00900 159 WAIWVDAVGFAISALLIVSVRIPELA-ASEIQ-------ALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAI 230 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCC-Ccccc-------ccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999877766655544443221111 10000 000111233334456677788777666555544443 3344
Q ss_pred -HhHHHHHHH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 010733 245 -AFAAMWLEL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPS 322 (502)
Q Consensus 245 -~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (502)
.+.|.+.++ +|.++.+.+.+.....++.+++.++.+++.||.++++ ..... .....+. .........
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~-~~~~~~~---~~~~~~~~~-- 299 (365)
T TIGR00900 231 VALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMA-----LMTGA-IFVIGLA---ILVVGLTPP-- 299 (365)
T ss_pred HHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH-----HHHHH-HHHHHHH---HHHHHhhch--
Confidence 678888885 8999999999999999999999999999999998874 22111 1111111 111111111
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 323 TAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
+.+...+..++.|++.+...+ ...++..|..|+++|+++.|+.+...++++.++|.+.|.+.|..
T Consensus 300 ~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 300 NFPLFLVLWFAIGVGYGPINV-PQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 234445667778888887777 77889999999999999999999999999999999999999873
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=272.69 Aligned_cols=355 Identities=15% Similarity=0.131 Sum_probs=269.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHH
Q 010733 3 SETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWA 82 (502)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~ 82 (502)
++++.+..+.+..++...+.....+.+|.+.+++|.++.+.+++.+.+.++..+++++.|++.||+|||+++..+.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 2 SAKAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFA 81 (385)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence 34445555555566677788888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCc
Q 010733 83 AATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIP 162 (502)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~ 162 (502)
++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----~ 156 (385)
T TIGR00710 82 LSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW-----L 156 (385)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887 8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hh
Q 010733 163 GWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SG 241 (502)
Q Consensus 163 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 241 (502)
+||+.|++.++..++..+..++..++++..+++ . +.++..++.++.++++.++...+....... .+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (385)
T TIGR00710 157 SWHAIFAFLSLAGILLSALIFFILPETLPYEAR----------I---QISTYFETFLLLLKSKMFWGYALIYGASFGGFF 223 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc----------C---CHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence 999999998888777766665544332211110 0 012223445566777777665544433333 34
Q ss_pred hHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010733 242 SAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDD 320 (502)
Q Consensus 242 ~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (502)
....+.|.+++ ++|.++.+.+.+.....++.++++++.+++.||+++|+ ...... ................ .
T Consensus 224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~-~ 296 (385)
T TIGR00710 224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS-----LLRMGL-ILFAVSAVLLEITAIL-G 296 (385)
T ss_pred HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-----HHHHHH-HHHHHHHHHHHHHHHh-c
Confidence 45567788887 68999999999999999999999999999999999884 221111 1111111111111111 1
Q ss_pred CchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHH
Q 010733 321 PSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGIL 384 (502)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l 384 (502)
...........++.|++.+...+ .......|..| +.++++.++.+.....++.+.+++.+.+
T Consensus 297 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 297 LGSWAMIIGPMMFVGIGNSMISS-IAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI 358 (385)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12233344445566777776666 56677778776 6799999999999888777777777643
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=291.27 Aligned_cols=367 Identities=16% Similarity=0.197 Sum_probs=280.4
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAAT 85 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~ 85 (502)
+.+..++++.++..++....++.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS 81 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchh
Q 010733 86 FLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWR 165 (502)
Q Consensus 86 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~ 165 (502)
+++++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..+||.+++++.++ .+||
T Consensus 82 ~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----~~w~ 156 (485)
T TIGR00711 82 LLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN-----YHWR 156 (485)
T ss_pred HHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC-----cCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887 8999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccccCCCccC----------------CCCCCcchhhhHHH---------------
Q 010733 166 LAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKID----------------HKPRRPFWADIKDL--------------- 214 (502)
Q Consensus 166 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~--------------- 214 (502)
+.|++.+++.++..++.++..+++++...++.+.. .+..+..|.+.+..
T Consensus 157 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (485)
T TIGR00711 157 WIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFV 236 (485)
T ss_pred ehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999888877776666554333222111111000 00011111100000
Q ss_pred HH--------HhhhhhhhhHHHHHHHHHHhhhh-hhhHHHhHHHHHHH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhh
Q 010733 215 IT--------DAKMVIKIPTFQIIVAQGVFGSF-SGSAFAFAAMWLEL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGD 284 (502)
Q Consensus 215 ~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 284 (502)
.+ ...++++++.++...+..+.... .+....++|.|+++ +|+++.++++...+..++.+++.++.|++.|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~ 316 (485)
T TIGR00711 237 VWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGD 316 (485)
T ss_pred HHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 01245666666655444443333 45566789999984 8999999999999999999999999999999
Q ss_pred hhhhcCCCchhHHHHHHHHHHHHHHHHHHHh-hcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhH
Q 010733 285 ILAQRLPDSGRVILSQISAASVIPTAAVLLL-VLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIY 363 (502)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 363 (502)
|+++|+ .... .. ....+....+. ...... .........++.|++.+...+ .......+..|+++++++.
T Consensus 317 r~~~~~-----~~~~--g~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~~~~~~-~~~~~~~~~~~~~~~g~~~ 386 (485)
T TIGR00711 317 KIDPRK-----LVTI--GL-ILYAVGFYWRAFTFTPDT-PFLAIALPQFIRGFGMGCFFM-PLTTIALSGLPPHKIARGS 386 (485)
T ss_pred hcCcHH-----HHHH--HH-HHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCHHHHhHHH
Confidence 999884 2111 11 11111111111 112222 223334456677888777665 4566677888999999999
Q ss_pred hHHHhhhhhhhchhHHHHHHHHHH
Q 010733 364 ALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 364 g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
|+.+..+.+|+.+++.+.|.+.++
T Consensus 387 ~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 387 SLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=280.01 Aligned_cols=366 Identities=17% Similarity=0.204 Sum_probs=270.6
Q ss_pred HHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhh
Q 010733 13 FAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSS 92 (502)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~ 92 (502)
++++..+.++..++...|.+.+++|.+..+.|++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 81 (379)
T TIGR00881 2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST 81 (379)
T ss_pred chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHH-HHHHHHHhhccCCCcchhHHHHHH
Q 010733 93 TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGG-FCSVLIASTSFMGIPGWRLAFHLV 171 (502)
Q Consensus 93 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~-~l~~~l~~~~~~~~~~w~~~f~~~ 171 (502)
+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .++..+.+. .+||+.|++.
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~ 156 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-----YSWHWVFIVP 156 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc-----CCchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 466666665 7999999998
Q ss_pred HHHHHHHHHHHHhhc-cCCcccccCCCcc---CC-CC-CCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHH
Q 010733 172 GLISVIVGVLVHVYA-NDPRCLAKDGTKI---DH-KP-RRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGSAF 244 (502)
Q Consensus 172 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 244 (502)
+++.++..++.+... ++++....++.++ ++ +. .+...++.+......+.+++++.++...+..+.... .....
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (379)
T TIGR00881 157 GIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGIL 236 (379)
T ss_pred HHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 888777766665543 3332211111100 00 00 000000001111234556677777766555444444 34556
Q ss_pred HhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCch
Q 010733 245 AFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPST 323 (502)
Q Consensus 245 ~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (502)
.+.|.|++ .+|+++.+++.......++.++++++.+++.||..+++. ....... .. .............. ..
T Consensus 237 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~----~~~~~~~-~~-~~~~~~~~~~~~~~-~~ 309 (379)
T TIGR00881 237 DWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRR----GPLAVFF-MA-LIIVSLLVYWLNPA-AN 309 (379)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcc----hHHHHHH-HH-HHHHHHHHHhcCcc-hh
Confidence 78899987 589999999999999999999999999999998654431 1111111 11 11111111111111 12
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 324 AFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 324 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
........+..|+......+ ....+..|..|++.|+++.|+.+....+++.++|.+.|.+.|.. ++.
T Consensus 310 ~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~ 376 (379)
T TIGR00881 310 PLMDLICLFALGFLVYGPQM-LIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF-GWA 376 (379)
T ss_pred HHHHHHHHHHHHHHHhhhhH-HHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh-ccc
Confidence 22233444555554444333 45678899999999999999999999999999999999999984 554
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=258.67 Aligned_cols=361 Identities=15% Similarity=0.127 Sum_probs=288.0
Q ss_pred CcchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHH
Q 010733 2 KSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLW 81 (502)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~ 81 (502)
+.+++.+++..++....+....+++++.+.+.+++|+|+.|.+++.++..+...+..++.|.+.||||.|++..+++++.
T Consensus 10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~ 89 (417)
T COG2223 10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL 89 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence 34678888888989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh---hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhcc
Q 010733 82 AAATFLVAFSS---TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSF 158 (502)
Q Consensus 82 ~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~ 158 (502)
.+-++..+++. ++|++++.+++.|++ |..+....+.+++||||+++|.++|+.. ..++|..+...++..+...
T Consensus 90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~-- 165 (417)
T COG2223 90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA-- 165 (417)
T ss_pred HHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH--
Confidence 99999999986 445999999999998 5577888899999999999999999999 9999999999999999987
Q ss_pred CCCcc---hhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHH
Q 010733 159 MGIPG---WRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGV 235 (502)
Q Consensus 159 ~~~~~---w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (502)
.+ ||..-.+..+..++..+..++..+|.+..+...+.. +. .+.+.+++++..|.+.+..+
T Consensus 166 ---~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~------------~~--~~~~~v~~~~~~W~lsllY~ 228 (417)
T COG2223 166 ---FGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQ------------LP--AQLKAVFSNKDTWLLSLLYF 228 (417)
T ss_pred ---HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccc------------ch--hHHHHHhcCcchHHHHHHHH
Confidence 77 999999998988888888888766644321111100 00 34566776777777666666
Q ss_pred hhhhhh-hHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 010733 236 FGSFSG-SAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVL 313 (502)
Q Consensus 236 ~~~~~~-~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
..+..+ +...++|.|++ ++|.++.+++.......+.+.+.++++|+++||+|.+|. ... ....+.++.....
T Consensus 229 ~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv-----~~~-~f~~~~~~~~~l~ 302 (417)
T COG2223 229 ATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV-----TLA-VFVGMALAAALLS 302 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH-----HHH-HHHHHHHHHHHHH
Confidence 666654 55679999998 799999999999999999999999999999999999852 222 1112222212111
Q ss_pred HhhcCC-CCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcC
Q 010733 314 LLVLPD-DPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGY 391 (502)
Q Consensus 314 ~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~ 391 (502)
+..... ...+.......++..+++.+.... ..+.++...+| ++.|.+.|+..+++.+|+..-|...|...+.++.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnG-svfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~ 379 (417)
T COG2223 303 LFLTGFGHGGSFVVFVAVFLALFVFAGLGNG-SVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSY 379 (417)
T ss_pred ccccccccCcchHHHHHHHHHHHHHhccCcc-hheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccH
Confidence 111111 113334444556666777777776 67888888887 46899999999999999999999999999997543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=279.70 Aligned_cols=350 Identities=14% Similarity=0.084 Sum_probs=266.4
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHH
Q 010733 9 VLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLV 88 (502)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~ 88 (502)
..+.+..++..+......+.+|.+.++++.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~ 99 (417)
T PRK10489 20 RAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGL 99 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHH
Confidence 34455566777777788888999999999999999999999999999999999999999999999998888888776655
Q ss_pred Hh-----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcc
Q 010733 89 AF-----SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG 163 (502)
Q Consensus 89 ~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~ 163 (502)
+. .++++.+++.|+++|++.+...++..+++.+++|+++|+++.++.....++|..+||.+++.+.+. .+
T Consensus 100 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~-----~~ 174 (417)
T PRK10489 100 ALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA-----GG 174 (417)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH-----Hh
Confidence 42 568899999999999999988899999999999999999999999999999999999999999887 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhH
Q 010733 164 WRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSA 243 (502)
Q Consensus 164 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (502)
|++.|++.++..++..++.+.+|++++..++ + ++.. ++..+..+..+++|.++...+..++.......
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T PRK10489 175 VAWNYGLAAAGTFITLLPLLRLPALPPPPQP---R------EHPL---RSLLAGFRFLLASPVVGGIALLGGLLTMASAV 242 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc---c------ccch---HHHHHHHHHHHcChHHHHHHHHHHHHHHHHhH
Confidence 9999999888777666665556554322100 0 0111 22233345566777765554444433333455
Q ss_pred HHhHHHHHHH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 010733 244 FAFAAMWLEL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPS 322 (502)
Q Consensus 244 ~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (502)
..+.|.|.++ +|.++.+.+++.+...++.+++.++.+++.||.++++ .+.... ....+. ...... .+
T Consensus 243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~-----~l~~~~---~~~~~~-~~~~~~--~~- 310 (417)
T PRK10489 243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGL-----LMLLST---LGSFLA-VGLFGL--MP- 310 (417)
T ss_pred HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcch-----HHHHHH---HHHHHH-HHHHHc--cc-
Confidence 5678999986 8999999999999999999999999999999855442 111111 111111 111111 12
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 323 TAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
.+....+..++.|++.+...+ ...+++++..|++.||+++|+.+...+++..++|.+.|.+.|..
T Consensus 311 ~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~ 375 (417)
T PRK10489 311 MWILAVLCLALFGYLSAISSL-LQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM 375 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh
Confidence 233344566667777776655 56788899999999999999999999999999999999999984
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=278.02 Aligned_cols=346 Identities=27% Similarity=0.404 Sum_probs=263.5
Q ss_pred HHHHHHHHHHhhccchhhHH-HHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHH
Q 010733 11 VNFAAIMERADESMLPGVYK-EVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVA 89 (502)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~ 89 (502)
++++.++..++.....+.+| .+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..
T Consensus 1 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 1 LFLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence 35677888888888999999 89999999999999999999999999999999999999999999999999999977777
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHH
Q 010733 90 FSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFH 169 (502)
Q Consensus 90 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~ 169 (502)
++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++.+.+. .+||+.|+
T Consensus 81 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-----~~~~~~~~ 155 (352)
T PF07690_consen 81 FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY-----FGWRWAFL 155 (352)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-----CHHCCHHH
T ss_pred hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc-----cccccccc
Confidence 7788889999999999999999999999999999999999999999999999999999999999877 89999999
Q ss_pred HHHHHHHHHHHHHHh-hccCCcccccCCCccCCCCCCcchhhhHHHHH-HhhhhhhhhHHHHHHHHHHhhh-hhhhHHHh
Q 010733 170 LVGLISVIVGVLVHV-YANDPRCLAKDGTKIDHKPRRPFWADIKDLIT-DAKMVIKIPTFQIIVAQGVFGS-FSGSAFAF 246 (502)
Q Consensus 170 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 246 (502)
+.+++.++..++... ++++++..+.+++.+++ ++.++... ..+.+++++.++......+... .......+
T Consensus 156 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (352)
T PF07690_consen 156 ISAILSLIAAILFILFLPEPPPPRERESPKESE-------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFF 228 (352)
T ss_dssp HHHHHHHHHHHHHHCCC---STTTT--SSTTTT---------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhHhhhhhhcccccccccccccc-------cccccccccccccccccchhhhhhhhhhHHHHHHHHhhcc
Confidence 999998888775433 43333332222211110 00111112 2455566665553333333333 34456678
Q ss_pred HHHHH-HHhCCC-hhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchH
Q 010733 247 AAMWL-ELIGFS-HKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTA 324 (502)
Q Consensus 247 ~~~~~-~~~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (502)
.|.|+ +++|++ ..+.+.+.....+.++++.++.+++.||+++++ ....... . ..+....+..... ....
T Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~-~--~~~~~~~~~~~~~-~~~~ 299 (352)
T PF07690_consen 229 LPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR-----RLLIAIL-L--LILGALGLLLLPF-SSSP 299 (352)
T ss_dssp HHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHH-H--HHHHHHHHCCSHH-HCHH
T ss_pred cchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-----HHHHHHH-H--HHHHHHHHHHHHH-hhhH
Confidence 99985 479999 899999999999999999999999999998763 1111111 1 1111111111111 1122
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhH
Q 010733 325 FLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAP 378 (502)
Q Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~ 378 (502)
.......++.|++.+...+ ...++..+..|++++|++.|+.+...++++.++|
T Consensus 300 ~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 300 VWLIIALFLIGFGFGIVFP-ILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCH-HHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3344466678888888777 8899999999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=276.94 Aligned_cols=372 Identities=15% Similarity=0.145 Sum_probs=263.0
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
+|..+....+.+...+.++..+....|.+++ +|.++++.+++.+++.++..+++++.|+++||+|||+++..+.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 3555666677777788888888888888876 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh----hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHh-hcc
Q 010733 84 ATFLVAFS----STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAS-TSF 158 (502)
Q Consensus 84 ~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-~~~ 158 (502)
+.++.++. ++++.+.+.|++.|++.+...+.....+.|++|+++|++++++.+.+.++|..+++.+.+.... .
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~-- 181 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF-- 181 (438)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh--
Confidence 98888764 4677888999999999999999999999999999999999999999999999999888775443 3
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHh-hccCCcccccCC--C-ccC--CC--CCCcchhhhHHHHHHhhhhhhhhHHHHH
Q 010733 159 MGIPGWRLAFHLVGLISVIVGVLVHV-YANDPRCLAKDG--T-KID--HK--PRRPFWADIKDLITDAKMVIKIPTFQII 230 (502)
Q Consensus 159 ~~~~~w~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~-~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (502)
.+||+.|++.+++.++..++.++ .+|+|+....++ + +++ ++ ++.+...+.++.. .+..++++.++..
T Consensus 182 ---~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 256 (438)
T TIGR00712 182 ---NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIF--MQYVLPNKLLWYI 256 (438)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHH--HHHHccCchHHHH
Confidence 69999999999888877666555 444332211000 0 000 00 0000000111111 1246677877776
Q ss_pred HHHHHhhhh-hhhHHHhHHHHHHH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHH
Q 010733 231 VAQGVFGSF-SGSAFAFAAMWLEL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIP 308 (502)
Q Consensus 231 ~~~~~~~~~-~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 308 (502)
....++... .+....|.|.|+++ .|+++.++++...+..+.+++++++.|++.||+++++.. ..... ......
T Consensus 257 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~----~~~~~-~~~~~~ 331 (438)
T TIGR00712 257 AIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRG----ATGVF-FMTLVT 331 (438)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc----HHHHH-HHHHHH
Confidence 555444333 45666799999985 799999999999999999999999999999999755311 11111 111111
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhh-chhHHHHHHHHHH
Q 010733 309 TAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPS-SFAPAVVGILAQH 387 (502)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~-~i~~~~~g~l~~~ 387 (502)
.....+. .....+.+. .....+..|++...... .......|.+|++.|++++|+.+...++++ .++|.+.|.+.|.
T Consensus 332 ~~~~~~~-~~~~~~~~~-~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~ 408 (438)
T TIGR00712 332 IAVIVYW-MNPAGNPLV-DMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 408 (438)
T ss_pred HHHHHHH-hcCCCchHH-HHHHHHHHHHHHccHHH-HHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh
Confidence 1111111 111122222 22333444443322211 123456789999999999999999988875 6899999999998
Q ss_pred HhcCC
Q 010733 388 VYGYK 392 (502)
Q Consensus 388 ~~~~~ 392 (502)
. +++
T Consensus 409 ~-g~~ 412 (438)
T TIGR00712 409 F-GWD 412 (438)
T ss_pred c-cch
Confidence 4 554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=282.72 Aligned_cols=369 Identities=14% Similarity=0.107 Sum_probs=256.0
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhhccCC--------CccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHH
Q 010733 11 VNFAAIMERADESMLPGVYKEVGAALHTD--------PTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWA 82 (502)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~ 82 (502)
+.++.++..++....++..|.+..+++.+ ..+.+++.+++.++..++++++|+++||+|||++++++.++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~ 112 (481)
T TIGR00879 33 AAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFV 112 (481)
T ss_pred HHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHH
Confidence 34444566778888888899999988877 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh---hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHH---HHHHhh
Q 010733 83 AATFLVAFSS---TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCS---VLIAST 156 (502)
Q Consensus 83 ~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~---~~l~~~ 156 (502)
++.+++.+.. +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++ ....+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 192 (481)
T TIGR00879 113 IGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNT 192 (481)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 9999996543 5568999999999999999999999999999999999999999999999999999998 544444
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCC--------CCCCcchhhhH--H-------------
Q 010733 157 SFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDH--------KPRRPFWADIK--D------------- 213 (502)
Q Consensus 157 ~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~------------- 213 (502)
.+||+.|++.++..++..+..++++|+|++...+++.++. ..........+ +
T Consensus 193 -----~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (481)
T TIGR00879 193 -----LGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSV 267 (481)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence 7999999997776666666566677665432111111000 00000000000 0
Q ss_pred --HHHHhhhhh---hhhHHHHHHHHHHhhhhh-hhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhh
Q 010733 214 --LITDAKMVI---KIPTFQIIVAQGVFGSFS-GSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILA 287 (502)
Q Consensus 214 --~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 287 (502)
.+.+..... +++.++...+..+..... .....+.|.++++.|++..+++.......++.+++.++.+++.||++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 347 (481)
T TIGR00879 268 QPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFG 347 (481)
T ss_pred cccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 001111111 123333333333332222 23445788888889999988899999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCc-----hHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhh
Q 010733 288 QRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPS-----TAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSI 362 (502)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~ 362 (502)
||+ ..... ..........+.+......+. ....+ ....+.+.+.+....+....+..|.+|++.|+++
T Consensus 348 ~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 420 (481)
T TIGR00879 348 RRP-----LLLIG-AAGMAICLFVLGILGASFVTGSSKSSGNVAI-VFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKG 420 (481)
T ss_pred chH-----HHHHH-HHHHHHHHHHHHHHhhcccCCcccchhHHHH-HHHHHHHHHHHccccCeehhhhhccCChHHHHHH
Confidence 884 22211 111111111111111111111 22222 2222223333332222567788999999999999
Q ss_pred HhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 363 YALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 363 ~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
+|+.+...+++++++|.+.+.+.+.. ++.
T Consensus 421 ~~~~~~~~~lg~~i~~~~~~~~~~~~-~~~ 449 (481)
T TIGR00879 421 ISIAVAANWLANFIVGFLFPTMLESI-GVG 449 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-Ccc
Confidence 99999999999999999999998873 443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=269.41 Aligned_cols=349 Identities=11% Similarity=0.034 Sum_probs=257.1
Q ss_pred HHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 010733 12 NFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFS 91 (502)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~ 91 (502)
.+..+...+......+.+|.+.+++|.+..+.++..+++.+++.++++++|+++||+|||++++.+.+++++++++++++
T Consensus 22 ~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a 101 (413)
T PRK15403 22 ILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT 101 (413)
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc
Confidence 33345566778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHH
Q 010733 92 STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLV 171 (502)
Q Consensus 92 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~ 171 (502)
+|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..+||++++.+.++ .+||+.|++.
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~-----~gw~~~f~~~ 176 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF-----VHWKVLFAII 176 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHH
Confidence 99999999999999999877788889999999999999999999999999999999999999887 8999999999
Q ss_pred HHHHHHHHHHHHh-hccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHHhHHH
Q 010733 172 GLISVIVGVLVHV-YANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFAFAAM 249 (502)
Q Consensus 172 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 249 (502)
+++.++..+..++ +||+++. ++ + +. +.++..++++.++++|.++...+....... .+....+.|.
T Consensus 177 ~~~~~i~~~~~~~~lp~~~~~-~~--~-------~~---~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~ 243 (413)
T PRK15403 177 AVMGLIAFVGLLLAMPETVKR-GA--V-------PF---SAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPV 243 (413)
T ss_pred HHHHHHHHHHHHHhCCCCccc-cC--C-------CC---ChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 9888777665444 4443221 00 0 00 113345567788889998876665554444 3444567898
Q ss_pred HHHH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHH
Q 010733 250 WLEL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHG 328 (502)
Q Consensus 250 ~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (502)
++++ +|+++.+.++.......+.+++..+.+++.++..+++. ..........+..+........ .+.+....
T Consensus 244 ~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~----~~~~~~~~~ig~~l~~~~~~~~---~~~~~~~~ 316 (413)
T PRK15403 244 ILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF----IWRAVPIQLVGLALLIVGNLLW---PHVWLWSV 316 (413)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH----HHHHHHHHHHHHHHHHHHHHHc---cccHHHHH
Confidence 8885 69999999999888888888887777776644333321 1111011111111111111111 12222233
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 329 LALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 329 ~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
...++.+++.+...+ ........ -.+..+|++.++.+.....+..+++...|++.+.
T Consensus 317 ~~~~l~~~G~~~~~p-~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~ 373 (413)
T PRK15403 317 LGTSLYAFGIGLIFP-TLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN 373 (413)
T ss_pred HHHHHHHHHHHHHhH-HHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455566777666665 33322221 1233479999999999999999999999988766
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=268.24 Aligned_cols=349 Identities=20% Similarity=0.195 Sum_probs=256.7
Q ss_pred CCcchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHH
Q 010733 1 MKSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFL 80 (502)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l 80 (502)
|++..+.++.+.++.++...+.....+.+|.+.+++|.|..++|++.+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~ 80 (381)
T PRK03633 1 MSTYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLI 80 (381)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 56667778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCC
Q 010733 81 WAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMG 160 (502)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~ 160 (502)
.+++.+++++++|++.+++.|+++|++.+...+...+.+.+..++++|++++++...+.++|..+|+.+++.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---- 156 (381)
T PRK03633 81 FAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE---- 156 (381)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----
Confidence 9999999999999999999999999999999998888888999999999999999999999999999999988764
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhh
Q 010733 161 IPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFS 240 (502)
Q Consensus 161 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (502)
..|...+. .+........+. +...+++. . + ++ +. + +.++.++++.++......+.....
T Consensus 157 -~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~---~--~~--~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~ 215 (381)
T PRK03633 157 -LMSVLPWV-TGLVLAAILPLL-FTRILNQQ-A---E--NH--DS---T-------SIWPMLKLRQARLGVNGCIISGIV 215 (381)
T ss_pred -ccchHHHH-HHHHHHHHHHHH-HhcccCCC-C---C--CC--CC---C-------CHHHHHHhcchHHHHHHHHHHHHH
Confidence 33333322 222222111111 11111110 0 0 00 00 0 112234455555433322222222
Q ss_pred -hhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCC
Q 010733 241 -GSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPD 319 (502)
Q Consensus 241 -~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (502)
.....++|.|+++.|.++.+.+.+.+...++.++++++.|++.||+++|+ ...... .. ..+....+ ..
T Consensus 216 ~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~-----~l~~~~--~~-~~~~~~~~--~~- 284 (381)
T PRK03633 216 LGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL-----VLRVQV--FV-VILGSIAM--LS- 284 (381)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH-----HHHHHH--HH-HHHHHHHH--hh-
Confidence 24456789999988999999999999999999999999999999999884 221111 11 11111111 11
Q ss_pred CCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcC
Q 010733 320 DPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGY 391 (502)
Q Consensus 320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~ 391 (502)
... .....++.|++.....+ ...+.+.|..|+++++...+..+...++|+.++|.+.|++.|.. ++
T Consensus 285 --~~~--~~~~~~l~g~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-g~ 350 (381)
T PRK03633 285 --QAA--MAPALFILGAAGFTLYP-VAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-SD 350 (381)
T ss_pred --hHH--HHHHHHHHHHHHHhHHH-HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-Cc
Confidence 111 12233445554444455 66777888888888888888888888999999999999999984 44
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=267.89 Aligned_cols=350 Identities=16% Similarity=0.103 Sum_probs=263.4
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHH
Q 010733 7 TLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATF 86 (502)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~ 86 (502)
.+..+.+...+..+....+.+.+|.+.+++|.++++.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 86 (401)
T PRK11043 7 FLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSL 86 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHH
Confidence 33444444555666777888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhH
Q 010733 87 LVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRL 166 (502)
Q Consensus 87 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~ 166 (502)
+++++++++.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+.+. .+||+
T Consensus 87 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-----~g~~~ 161 (401)
T PRK11043 87 GMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH-----FGWQA 161 (401)
T ss_pred HHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CChHH
Confidence 9999999999999999999999888888889999999999999999999999999999999999999987 89999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHH-hhhhhhhHHH
Q 010733 167 AFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGV-FGSFSGSAFA 245 (502)
Q Consensus 167 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 245 (502)
.|++.+++.++..++.+.++|+++..++ ++...+.+++++++.++....... .....+....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (401)
T PRK11043 162 IFATLFAITLLLILPTLRLKPSKKARKQ-----------------SQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLT 224 (401)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccc-----------------chHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888777666656554321110 001123445566666554333322 2222345556
Q ss_pred hHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHH
Q 010733 246 FAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAF 325 (502)
Q Consensus 246 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (502)
+.|.+++++|+++.+.++......++.++++++.+++.||+++|+ .... ......+......+......+. ..
T Consensus 225 ~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~ 297 (401)
T PRK11043 225 GSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQ-----LLPW-LLVLFAVSVIAIWLASLLSHPS-LV 297 (401)
T ss_pred HhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-----HHHH-HHHHHHHHHHHHHHHHHhccCc-HH
Confidence 789888889999999999888888889999999999999998874 1111 1111111111111111111122 22
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 326 LHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 326 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
.......+.+++.+...+ .......+..| +++|++.|+.+..+..++..++.+.|.+.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 298 PLLIPFCVMAAANGAIYP-IVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 333445566777777666 55566666666 5799999999999999999999999988763
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=266.81 Aligned_cols=360 Identities=14% Similarity=0.164 Sum_probs=258.1
Q ss_pred hHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHH
Q 010733 5 TLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAA 84 (502)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~ 84 (502)
++.+....++.++...........++.+.+++|.++++.|++.+.+.+++.+++++.|++.||+|||+++..+.++.+++
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~ 91 (402)
T TIGR00897 12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVG 91 (402)
T ss_pred CchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 45666777777776666666556667777899999999999999999999999999999999999999999999999988
Q ss_pred HHHHH---h-hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhH-hHHHHHHHHHHhhccC
Q 010733 85 TFLVA---F-SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGS-VLGGFCSVLIASTSFM 159 (502)
Q Consensus 85 ~~~~~---~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~l~~~l~~~~~~ 159 (502)
++++. + .++++.+++.|+++|++.+...+...+.+.+++|+++|++++|+.+.+.++|. +++|++++.+.+.
T Consensus 92 ~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~--- 168 (402)
T TIGR00897 92 HAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA--- 168 (402)
T ss_pred HHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---
Confidence 77653 3 35888999999999999988888888899999999999999999999999997 6899999888876
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh
Q 010733 160 GIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF 239 (502)
Q Consensus 160 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (502)
.||+..++......++..++.+++.++++.+++++ + +.+. ++..+..+.++++|.++......++...
T Consensus 169 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (402)
T TIGR00897 169 --FGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ---T----REKF---SELGKAATILFTNPNVLLGGMVRIINTI 236 (402)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHhccCCCCCccccc---C----Ccch---hhHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 78766665544443333444444433322111110 0 0111 1222345567788887765554444333
Q ss_pred -hhhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcC
Q 010733 240 -SGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLP 318 (502)
Q Consensus 240 -~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (502)
.+...++.|.|++++|++..+.+.+.....+++.+++++.|++.||++||+. ..........+....+......
T Consensus 237 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~-----~~~~~~l~~~~~~~~l~~~~~~ 311 (402)
T TIGR00897 237 GLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNT-----VRWFGGVGCGIFTLALYYIPQH 311 (402)
T ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-----HHHHHHHHHHHHHHHHHHHHHc
Confidence 4566678999999999999999998889999999999999999999998752 1111111111111111111111
Q ss_pred CCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 319 DDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
..+ ......+..+..|++.+...+ ......+..| ++|+++.|+.+....+++.++|.+.|.+.|..
T Consensus 312 ~~~-~~~~~~~~~~~~G~~~~~~~~--~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~ 377 (402)
T TIGR00897 312 FGH-SFAVALIIAIALGIFLAGYVP--LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF 377 (402)
T ss_pred cCC-cHHHHHHHHHHHHHHHHHHHH--HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 111 223333455566666655443 3455566544 68999999999999999999999999999984
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=270.57 Aligned_cols=345 Identities=17% Similarity=0.186 Sum_probs=250.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccchhhHHH-HhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHH
Q 010733 3 SETLTLVLVNFAAIMERADESMLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLW 81 (502)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~ 81 (502)
+.++.+..+++..++..++..+..+.+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.+++
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~ 91 (399)
T PRK05122 12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGC 91 (399)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHH
Confidence 34566778888899999999998888886 67899999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhh--------hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHH
Q 010733 82 AAATFLVAFSS--------TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLI 153 (502)
Q Consensus 82 ~~~~~~~~~~~--------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 153 (502)
+++.+.+.++. +++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+.+++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l 171 (399)
T PRK05122 92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL 171 (399)
T ss_pred HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence 88877665542 5778999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHH
Q 010733 154 ASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQ 233 (502)
Q Consensus 154 ~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (502)
.+. .+||+.+++.++..++..+.....++++ +. + + ++. +.++.. ++..+ .....
T Consensus 172 ~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~--~---~~~---~~~~~~---~~~~~-----~~~~~ 225 (399)
T PRK05122 172 YHW-----GGLAGLGLLIMLLALLGLLLARPRPAVP---PV--K--G---ERL---PFRRVL---GRVWP-----YGMGL 225 (399)
T ss_pred HHc-----ccHHHHHHHHHHHHHHHHHHHhcCCCCC---CC--C--c---cch---hHHHHH---HHHHH-----HHHHH
Confidence 887 8999998887665543332222111111 00 0 0 000 111111 11111 11111
Q ss_pred HHhhhhhhhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 010733 234 GVFGSFSGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVL 313 (502)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
.+..........+.|.|+++.|.+ +.+.......++.++++++.+++.||+++|+ ...... ..... ....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~-----~~~~~~-~~~~~--~~~~ 295 (399)
T PRK05122 226 ALASIGFGTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLR-----VAIVSL-LVEIL--GLLL 295 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHH-----HHHHHH-HHHHH--HHHH
Confidence 111122223446778887776663 4456667788888999999999999998874 221111 11111 1111
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 314 LLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
+ .. .++ .+...+..++.|++.+...+ .......|..|+++|+++.|+.+....++..+++++.|.+.+..
T Consensus 296 ~-~~--~~~-~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 365 (399)
T PRK05122 296 L-WL--APS-PWMALIGAALTGFGFSLVFP-ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF 365 (399)
T ss_pred H-HH--hcc-HHHHHHHHHHHHHhHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1 11 122 22344556677887776666 45566778889999999999999999999999999999999874
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=274.40 Aligned_cols=363 Identities=19% Similarity=0.194 Sum_probs=268.6
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
+|+.+...++.++..+++....++..|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+++..+.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 94 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSV 94 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH
Confidence 45566666777778888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcc
Q 010733 84 ATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG 163 (502)
Q Consensus 84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~ 163 (502)
+.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+. .+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~g 169 (398)
T TIGR00895 95 FTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV-----FG 169 (398)
T ss_pred HHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc-----cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-hccCCcccccCCCcc------------------CCCCCCcchhhhHHHHHHhhhhhhh
Q 010733 164 WRLAFHLVGLISVIVGVLVHV-YANDPRCLAKDGTKI------------------DHKPRRPFWADIKDLITDAKMVIKI 224 (502)
Q Consensus 164 w~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (502)
||+.|++.++..++..++.+. ++++++...++++++ +.++.+...+..++..+..++..+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (398)
T TIGR00895 170 WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTA 249 (398)
T ss_pred ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhH
Confidence 999999987666665555444 454433211110000 0000000111111112211111112
Q ss_pred hHHHHHHHHHHhh-hhhhhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHH
Q 010733 225 PTFQIIVAQGVFG-SFSGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISA 303 (502)
Q Consensus 225 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 303 (502)
+..+.+....+.. ...+....+.|.+.++.|.++.+.+.......++.+++.++.+++.||+++|+ .... ..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~--~~ 322 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV-----TALL--LL 322 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH-----HHHH--HH
Confidence 2222222222222 22345556788777789999999999999999999999999999999998872 1111 11
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHH
Q 010733 304 ASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGI 383 (502)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~ 383 (502)
..... ...+.. .. .+ ........++.|++.+...+ ...++..|.+|++.|+++.|+.+.+..+++.++|.+.|.
T Consensus 323 ~~~~~--~~~~~~-~~-~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 323 LGAVF--AVLVGS-TL-FS-PTLLLLLGAIAGFFVNGGQS-GLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHH--HHHHHH-Hh-hC-HHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 11111 111111 11 12 22234556677777777776 778999999999999999999999999999999999987
Q ss_pred H
Q 010733 384 L 384 (502)
Q Consensus 384 l 384 (502)
+
T Consensus 397 l 397 (398)
T TIGR00895 397 L 397 (398)
T ss_pred c
Confidence 5
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=262.42 Aligned_cols=345 Identities=17% Similarity=0.206 Sum_probs=245.2
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHH-HhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAA 84 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~ 84 (502)
+.+..+.++.++.........+.+|. +.+++|.|.+++|++.+++.+++.++++++|+++||+||||+++.+.++.+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA 94 (392)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence 45566667777778888888888885 67899999999999999999999999999999999999999999998887776
Q ss_pred HHHHH---h-----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 85 TFLVA---F-----SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 85 ~~~~~---~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
.+... + .++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++||++++.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (392)
T PRK12382 95 GLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH 174 (392)
T ss_pred HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 54332 2 358899999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHh
Q 010733 157 SFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVF 236 (502)
Q Consensus 157 ~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (502)
.+||+.+.+..+..++........+++++ ++ + .+. +.++.. +...+ +.... .+.
T Consensus 175 -----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~-----~~~---~~~~~~---~~~~~-~~~~~----~l~ 228 (392)
T PRK12382 175 -----FGFAALALTTMVLPLLAWAFNGTVRKVPA---HA--G-----ERP---SLWSVV---GLIWK-PGLGL----ALQ 228 (392)
T ss_pred -----cChHHHHHHHHHHHHHHHHHHHhccCCCC---Cc--c-----cCc---hHHHHH---HHHHH-hHHHH----HHH
Confidence 89999877655443333222211221111 00 0 000 111111 11111 11111 111
Q ss_pred hhhhhhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 010733 237 GSFSGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLV 316 (502)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (502)
.........+.|.++++.+++. .++......++.++++++.|++.||+++|+.. .... . ...+.... ..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~-----~~~~--~-~~~~~~~~-~~ 297 (392)
T PRK12382 229 GVGFAVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVA-----IVSL--L-VETVGLLL-LW 297 (392)
T ss_pred HHHHhHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeh-----HHHH--H-HHHHHHHH-HH
Confidence 1222244567788888777654 45666677788889999999999999988532 1111 1 11111111 11
Q ss_pred cCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 317 LPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
.. ++. .......++.|++.+...+ ...+...+..|+++||++.|+.++...+++.++|.+.|.+.|.. ++.
T Consensus 298 ~~--~~~-~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~-g~~ 368 (392)
T PRK12382 298 LA--PTA-WVALAGAALTGAGCSLIFP-ALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF-GYP 368 (392)
T ss_pred Hc--ccH-HHHHHHHHHHHHHHHhHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-Cch
Confidence 11 222 2334455667777776666 56677788899999999999999999999999999999999984 554
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=257.73 Aligned_cols=346 Identities=13% Similarity=0.116 Sum_probs=253.9
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFL 87 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~ 87 (502)
+..++++.++..++........+.+.++++.++.+.+++.+.+.+++.++.+++|+++||+|||++++++.++.++++++
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~ 84 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL 84 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence 34567777887776665666667778999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHH
Q 010733 88 VAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLA 167 (502)
Q Consensus 88 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~ 167 (502)
++++++. ++.|+++|++.+...|+..+++.|++|+++|++++++.+....+|.++||.+++.+.+. .|+..
T Consensus 85 ~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~------~~~~~ 155 (393)
T PRK11195 85 MLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP------HAEAA 155 (393)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Confidence 8887764 78899999999999999999999999999999999999999999999999999999885 48888
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHHh
Q 010733 168 FHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFAF 246 (502)
Q Consensus 168 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 246 (502)
+.+.+...++..+..+.+||++++.+.+ +.+.....++.....+.++++|.+........+... .......
T Consensus 156 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (393)
T PRK11195 156 LAVCALIYLLAALFNLFIPRLGARRPGQ--------SWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFL 227 (393)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccccc--------CCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence 8877665544444444455443221110 000111122333344566777776554433322222 2333345
Q ss_pred HHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHH
Q 010733 247 AAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAF 325 (502)
Q Consensus 247 ~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (502)
.|.+++ .+|.++.+.|++....+++.++++++.+++.||.++++ .... ....+. .... ... .+ +.+
T Consensus 228 ~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~-----~~~~--g~~~~~--~~~~-~~~--~~-~~~ 294 (393)
T PRK11195 228 VLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR-----VLPA--GILMGL--VVLL-MAL--QH-SLL 294 (393)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-----hHHH--HHHHHH--HHHH-HHH--Hh-HHH
Confidence 677777 58999999999999999999999999999999877663 1111 111111 1111 111 12 233
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhccCCCC-chhhHhHHHhhhhhhhchhHHHHHHH
Q 010733 326 LHGLALFIMGLCMSWNAPATNNPIFAEIVPERC-RTSIYALDQSFESIPSSFAPAVVGIL 384 (502)
Q Consensus 326 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~~~~i~~~~~g~l 384 (502)
......++.|++.+...+ ...+..++..|++. +|++.++.+..++++..++..+.+.+
T Consensus 295 ~~~~~~~~~G~~~g~~~~-~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 295 PAYPLLILIGALGGFFVV-PMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred HHHHHHHHHHHhhhhhhh-hHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344556677887777666 56777888766554 79999999999999999999999866
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=259.46 Aligned_cols=344 Identities=16% Similarity=0.096 Sum_probs=243.4
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFL 87 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~ 87 (502)
+....+..+..........+.+|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 34445555555566666668899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHH
Q 010733 88 VAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLA 167 (502)
Q Consensus 88 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~ 167 (502)
+.++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+. .+||+.
T Consensus 85 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~-----~g~~~~ 159 (392)
T PRK10473 85 CSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK-----FPWQSL 159 (392)
T ss_pred HHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----cChHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988776 899999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHHh
Q 010733 168 FHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFAF 246 (502)
Q Consensus 168 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 246 (502)
|++.+++.++..++.+...++++..+++ + +.. ..++.++.++++.++........... ......+
T Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (392)
T PRK10473 160 FYTMAAMGILVLLLSLFILKETRPARAP----A---ASS-------KPRENSESLLNRFFLSRLVITTLSVTVILTFVNT 225 (392)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccC----C---ccc-------hHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999888887777665543333211100 0 000 11222344556655543333222222 2333455
Q ss_pred HHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHH
Q 010733 247 AAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAF 325 (502)
Q Consensus 247 ~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (502)
.|.+++ ++|+++.+.+.+....+++.+++.++.+++.||+++|+ ...... ..... ....+ .... .....
T Consensus 226 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~-----~~~~~~-~~~~~--~~~~~-~~~~-~~~~~ 295 (392)
T PRK10473 226 SPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRT-----LMLTSQ-VLFLA--AGITL-ALSP-SHAVS 295 (392)
T ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-----HHHHHH-HHHHH--HHHHH-HHHH-HHHHH
Confidence 677776 68999999999999999999999999999999999884 221111 11111 11111 1111 11122
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 326 LHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 326 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
.......+.+.+...+ .....+..|.++|+ |.......++..+++.+.+++.+..
T Consensus 296 --~~~~~l~~~g~~~~~~---~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~ 350 (392)
T PRK10473 296 --LFGITLICAGFSVGFG---VAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVL 350 (392)
T ss_pred --HHHHHHHHHHHHHHhH---HHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222333333333333 23444555654443 4444555677788888888888874
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=262.61 Aligned_cols=356 Identities=12% Similarity=0.091 Sum_probs=258.7
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
....+..+++.+++..+.....++..|.+++++|.|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+.+++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 34556777888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH---HhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccC-
Q 010733 84 ATFLV---AFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFM- 159 (502)
Q Consensus 84 ~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~- 159 (502)
+++++ .++++++.++++|+++|+|.+...+...+++.++.++++|.+.+++.+....+|..+++.++..+......
T Consensus 104 ~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~ 183 (438)
T PRK10133 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99886 46889999999999999999999999999999987777777789999999999999999998766521000
Q ss_pred ------------C--------CcchhHHHHHHHHHHHHHHHHH-Hh-hccCCcccccCCCccCCCCCCcchhhhHHHHHH
Q 010733 160 ------------G--------IPGWRLAFHLVGLISVIVGVLV-HV-YANDPRCLAKDGTKIDHKPRRPFWADIKDLITD 217 (502)
Q Consensus 160 ------------~--------~~~w~~~f~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (502)
. ..+||++|+....+..+..++. +. .|+.++ ++ +. + ++. ++..++
T Consensus 184 ~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~---~~-~~-~-~~~-------~~~~~~ 250 (438)
T PRK10133 184 QSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS---DN-HS-D-AKQ-------GSFSAS 250 (438)
T ss_pred cchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---cc-cc-c-ccc-------cchhhh
Confidence 0 0256777765433333222222 22 222111 00 00 0 000 112233
Q ss_pred hhhhhhhhHHHHHHHHHHhhhh-hhhHHHhHHHHH-H-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCch
Q 010733 218 AKMVIKIPTFQIIVAQGVFGSF-SGSAFAFAAMWL-E-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSG 294 (502)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 294 (502)
.++++++|.++...+..++... .+....|.+.|+ + .+|+++.++++......++.++++++++++.||+++|+
T Consensus 251 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~---- 326 (438)
T PRK10133 251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK---- 326 (438)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----
Confidence 4566777777655444333333 344556788775 5 47999999999999999999999999999999999984
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhh
Q 010733 295 RVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPS 374 (502)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 374 (502)
...... .+...... .....+ . .. ....+.+.|++.+...| ...+...+..|+ +.+++.++.. ...+++
T Consensus 327 -~l~~~~--~~~~~~~~-~~~~~~--~-~~--~~~~~~l~glg~~~i~P-~~~s~a~~~~~~-~~~~as~l~~-~~~~g~ 394 (438)
T PRK10133 327 -VLAAYA--LIAMALCL-ISAFAG--G-HV--GLIALTLCSAFMSIQYP-TIFSLGIKNLGQ-DTKYGSSFIV-MTIIGG 394 (438)
T ss_pred -HHHHHH--HHHHHHHH-HHHHcC--C-hH--HHHHHHHHHHHHHHHHH-HHHHHHHcccch-hhccchhHHh-HHhccc
Confidence 222211 11111111 111111 1 11 23456678888888888 788888888775 4778888886 455789
Q ss_pred chhHHHHHHHHHHH
Q 010733 375 SFAPAVVGILAQHV 388 (502)
Q Consensus 375 ~i~~~~~g~l~~~~ 388 (502)
.++|++.|.+.|..
T Consensus 395 ~~~~~i~G~l~~~~ 408 (438)
T PRK10133 395 GIVTPVMGFVSDAA 408 (438)
T ss_pred hHHHHHHHHHHHhc
Confidence 99999999998874
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=258.91 Aligned_cols=353 Identities=14% Similarity=0.131 Sum_probs=264.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHH
Q 010733 3 SETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWA 82 (502)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~ 82 (502)
+.++.+.+..+..++..+......+.+|.+.+++|.|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~ 84 (394)
T PRK11652 5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFI 84 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence 34566666677777777777888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCc
Q 010733 83 AATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIP 162 (502)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~ 162 (502)
++.+++.++++++.+++.|++.|++.+...+....+..|++++++|+++.++...+..+|..++|.+++.+.+. .
T Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-----~ 159 (394)
T PRK11652 85 LGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL-----F 159 (394)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----c
Confidence 99999999999999999999999999988888889999999999999999999999999999999999999887 8
Q ss_pred chhHHHHHHHHHHHHHHHHHHh-hccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhhh
Q 010733 163 GWRLAFHLVGLISVIVGVLVHV-YANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSG 241 (502)
Q Consensus 163 ~w~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (502)
+||+.|++.++..++..++..+ .+|+++..++ + ++..+..+..++++.++......+......
T Consensus 160 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (394)
T PRK11652 160 GWRACYLFLLLLGAGVTFSMARWMPETRPADAR---------R-------TRVLASYRTLLSNRRFNCYLLMLIGTLAGI 223 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCccCccccc---------h-------hHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 9999999988877766555444 4433221100 0 112334455666776665444333333222
Q ss_pred -hHHHhHHHHHHH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCC
Q 010733 242 -SAFAFAAMWLEL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPD 319 (502)
Q Consensus 242 -~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (502)
....+.+.++++ +|+++.+.+++.....++.+++..+.+++.||.+++. ........... ..........
T Consensus 224 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~ 295 (394)
T PRK11652 224 AVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM------WQSVICCLLAG--LLMWIPGWFG 295 (394)
T ss_pred HHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH--HHHHHHHHhc
Confidence 223456777775 8999999999888888888889999999999887431 11111111111 1111111111
Q ss_pred CCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 320 DPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
... .+.......+.+++.+...+ ...++..|..| +++|++.++.+....+|+.+++.+.|.+.+.
T Consensus 296 ~~~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 296 VMN-VWTLLVPAALFFFGAGMLFP-LATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred ccc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 112 22334455667777777776 67778888887 5789999999999999999999988876543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=257.75 Aligned_cols=347 Identities=12% Similarity=0.059 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHHhhccchhhHH-HHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHH
Q 010733 9 VLVNFAAIMERADESMLPGVYK-EVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFL 87 (502)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~ 87 (502)
.++....++.........+.++ ++++++|+|..+.|++.+.+.+...+.+++.|+++||+|||+++..+.++.+++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~ 92 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFAT 92 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 3444556666655555555554 578899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHH
Q 010733 88 VAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLA 167 (502)
Q Consensus 88 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~ 167 (502)
+.++++++.+++.|+++|++.+...+...+++.+++|+++|++++++.....++|..+||++++.+. . .+||+.
T Consensus 93 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~-----~g~~~~ 166 (400)
T PRK11646 93 MAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q-----YDFRLV 166 (400)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----hhHHHH
Confidence 9999999999999999999999899999999999999999999999999999999999999999998 4 799999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHHh
Q 010733 168 FHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFAF 246 (502)
Q Consensus 168 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 246 (502)
|++.++..++..++.....++++.. +. . ++..++.++.++++.++......+.... ......+
T Consensus 167 f~~~~~~~~~~~i~~~~~~~~~~~~----~~-----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (400)
T PRK11646 167 CATGAVLFVLAAAFNAWLLPAYKLS----TV-----R-------TPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLM 230 (400)
T ss_pred HHHHHHHHHHHHHHHHHhCCccccc----cc-----c-------hhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 9998887776665544433222110 00 0 0111234455666666544333322222 2233457
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhh-hhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHH
Q 010733 247 AAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDI-LAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAF 325 (502)
Q Consensus 247 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (502)
+|.|+++.+.++.+.+.+.+..++....+....+++.|| ++.++ .... . .....+. ...+... ++.+
T Consensus 231 ~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~--~-~~~~~~~-~~~l~~~--~~~~- 298 (400)
T PRK11646 231 LPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEH-----RLMA--G-LLIMSLS-MFPIGMV--SNLQ- 298 (400)
T ss_pred hhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH-----HHHH--H-HHHHHHH-HHHHHHh--hhHH-
Confidence 899998766677888888888777666555555665554 44332 1111 1 1111111 1111111 2222
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhc
Q 010733 326 LHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYG 390 (502)
Q Consensus 326 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~ 390 (502)
.......+.+.+.+...+ ...++..+..|++++|+++|+.+....++..++|.+.|.+.|..++
T Consensus 299 ~~~~~~~l~~~g~~~~~p-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~ 362 (400)
T PRK11646 299 QLFTLICLFYIGSIIAEP-ARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKA 362 (400)
T ss_pred HHHHHHHHHHHHHHHHHc-cHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhh
Confidence 233334455666666655 6688899999999999999999999999999999999999998644
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=258.39 Aligned_cols=353 Identities=14% Similarity=0.121 Sum_probs=248.5
Q ss_pred HHHHHHHHHHHHHhhccchhhHHH-HhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATF 86 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~ 86 (502)
++..+++++.........++..|. +++++|+|+.+.+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 446777888888888999999995 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhh-hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhc-----cCC
Q 010733 87 LVAFSS-TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTS-----FMG 160 (502)
Q Consensus 87 ~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-----~~~ 160 (502)
++++++ +++.+++.|+++|++.+. .+...+++.+++|+++|++++++.....++|..+++.+++.+.... ...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~ 161 (366)
T TIGR00886 83 WAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA 161 (366)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999 999999999999998654 5667899999999999999999999888888888888877666421 011
Q ss_pred CcchhHHH-HHHHHHHHHHHHHHHh-hccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhh
Q 010733 161 IPGWRLAF-HLVGLISVIVGVLVHV-YANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGS 238 (502)
Q Consensus 161 ~~~w~~~f-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (502)
..+||+.| +..+++..+..++.+. .+++|+..+++++.+... . .+...++..++.++.++++.++......+...
T Consensus 162 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (366)
T TIGR00886 162 HLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKG-A--RWSVGTGALGDQLKVFRDRHTWILALLYSVTF 238 (366)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhccccc-c--cccccchhHHHHHHHHhccchhhHHHHHHHHH
Confidence 25899999 4445555554444444 444443221111100000 0 00000111223445666676666555544444
Q ss_pred h-hhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 010733 239 F-SGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLV 316 (502)
Q Consensus 239 ~-~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (502)
. .+....+.|.|++ .+|+++.+++.+.....+..++++++.|++.||+++|+. ...... . .......+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-----~~~~~~-~--~~~~~~~~~~ 310 (366)
T TIGR00886 239 GSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARK-----LLMSFL-G--VAMGAFLVVL 310 (366)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchh-----HHHHHH-H--HHHHHHHHHh
Confidence 3 3455678899997 579999999999999999999999999999999999842 211111 1 1111111111
Q ss_pred cCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhh
Q 010733 317 LPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPS 374 (502)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 374 (502)
....+.............++..+.... ..+.+..+..| +++|+++|+.+.++++|+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 311 GLVSPLSLAVFIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGAIGNLGG 366 (366)
T ss_pred cCCCcchHHHHHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence 111111233333444445555555555 56777788887 689999999999888764
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-31 Score=257.66 Aligned_cols=353 Identities=14% Similarity=0.222 Sum_probs=258.2
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCcc-----chHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTG-----LGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFL 80 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-----~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l 80 (502)
+....++++.++.........+.+|.+.+++|.+..+ .|++.+++.++..++.++.|+++||+|||+++..+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 93 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALG 93 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence 4456667788888888888899999999999998765 38899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCC
Q 010733 81 WAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMG 160 (502)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~ 160 (502)
.+++.+++.++++++.+++.|++.|++.+ ..+....++.+++|+++|++++++...+..+|..++|.+++.+.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---- 168 (408)
T PRK09874 94 MGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS---- 168 (408)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 99999999999999999999999999865 5677888999999999999999999999999999999999999887
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHH-HHHHHHhhhh
Q 010733 161 IPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQI-IVAQGVFGSF 239 (502)
Q Consensus 161 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 239 (502)
.+||+.|++.+++.++..+..+++.++++...+++ + ..+ .++..+.++++.++. .....+....
T Consensus 169 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (408)
T PRK09874 169 -YGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK-------E---MLH----MREVVTSLKNPKLVLSLFVTTLIIQV 233 (408)
T ss_pred -hCHHHHHHHHHHHHHHHHHHHHHHhccCcccccch-------h---hhH----HHHHHHhCcCCchHHHHHHHHHHHHH
Confidence 89999999998887777766665544432111100 0 001 112223344554433 2222222222
Q ss_pred h-hhHHHhHHHHHHHhCCChh----HHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 010733 240 S-GSAFAFAAMWLELIGFSHK----LTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLL 314 (502)
Q Consensus 240 ~-~~~~~~~~~~~~~~g~s~~----~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (502)
. .....+.+.|..+.+.+.. ..+.+....+++.+++.+..|++.||+++|+. ..... .. .. .....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~-----~~~~~--~~-~~-~~~~~ 304 (408)
T PRK09874 234 ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKI-----LITAL--IF-SV-LLLIP 304 (408)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh-----HHHHH--HH-HH-HHHHH
Confidence 2 2334567777775433322 24556666778888999999999999998852 21111 11 11 11111
Q ss_pred hhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 315 LVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
.... ++ .+...+..++.|++.+...+ ...+...+..|++.+|+.+++.+.+..+|..++|.+.|.+.+.. ++.
T Consensus 305 ~~~~--~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~-g~~ 377 (408)
T PRK09874 305 MSFV--QT-PLQLGILRFLLGAADGALLP-AVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY-GFR 377 (408)
T ss_pred HHHh--cc-HHHHHHHHHHHHhhhHhhHH-HHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc-chh
Confidence 1111 22 23344555667887777766 66777788889999999999999999999999999999998873 543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=267.70 Aligned_cols=347 Identities=18% Similarity=0.227 Sum_probs=260.9
Q ss_pred hhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhh
Q 010733 33 GAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSS--TFFQVAVSRGLNGIGLAI 110 (502)
Q Consensus 33 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~ 110 (502)
..+++++..|.|++.+.++.|+.+++++.|+++||||.|+++..+.++.++++++..++. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 457899999999999999999999999999999999999999999999999999999876 556789999999999999
Q ss_pred hhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCc
Q 010733 111 VIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPR 190 (502)
Q Consensus 111 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 190 (502)
.+|+...+.++|.|++||++..++...+..+|.+++.+++|++.+. ..||+++|++.++.+++..++++.+..|.+
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s----~~GW~sifY~~g~~g~i~~~~w~~~~~d~P 220 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES----SLGWPSIFYVFGIVGLIWFILWFLFYSDSP 220 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc----CCCCchHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999985 279999999999999999998887665543
Q ss_pred ccccCCCccCCC---CCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHHhHHHHHH-HhCCChhHHHHHH
Q 010733 191 CLAKDGTKIDHK---PRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFAFAAMWLE-LIGFSHKLTAFLM 265 (502)
Q Consensus 191 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~s~~~~~~~~ 265 (502)
.+++.-.++|.+ ..+...+..+....+++++++++.+|...+..+.... .+....|+|.|++ .+|++..+.|++.
T Consensus 221 ~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~s 300 (466)
T KOG2532|consen 221 SKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLS 300 (466)
T ss_pred ccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHH
Confidence 332221111100 0000000000023457888999999988887777666 4566789999999 5999999999999
Q ss_pred HHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCc
Q 010733 266 TLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPAT 345 (502)
Q Consensus 266 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (502)
++..+...+..+++|.++||..+|.......+.+.-.+........++.+.+......+.. +.++..+.+......+.
T Consensus 301 alP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a--~~~l~~~~~~~g~~~~G 378 (466)
T KOG2532|consen 301 ALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLA--VILLTIAIGLSGFNISG 378 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHH--HHHHHHHHHHcccchhh
Confidence 9999999999999999999998862222222333333333333333333333332232222 22233333333322213
Q ss_pred chhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHH
Q 010733 346 NNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQ 386 (502)
Q Consensus 346 ~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~ 386 (502)
.+.-..+.. +++.+..+|+.+....+.++++|.+.|.+..
T Consensus 379 f~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 379 FYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred hHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 344444444 4779999999999999999999999998875
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=256.94 Aligned_cols=325 Identities=12% Similarity=0.095 Sum_probs=236.0
Q ss_pred hhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010733 21 DESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVS 100 (502)
Q Consensus 21 ~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 100 (502)
....+.+.+|.+.+++|.|+++.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.++++++.+++.
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 34566688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHH
Q 010733 101 RGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGV 180 (502)
Q Consensus 101 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~ 180 (502)
|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+. .+||+.|++.+++.++..+
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~ 160 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW-----FSWHAIFWVLALAAILAAA 160 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887 8999999998888777766
Q ss_pred HHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHHhHHHHHH-HhCCCh
Q 010733 181 LVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFAFAAMWLE-LIGFSH 258 (502)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~s~ 258 (502)
+..+..++++..+++ ++.+ .++..++.++.++++.++.......+... .+....+.|.++. .+|+++
T Consensus 161 ~~~~~~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 229 (377)
T PRK11102 161 LVFFFIPETLPKERR--------QPFH---LRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSP 229 (377)
T ss_pred HHHHhCCccCccccc--------CCCC---hHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCH
Confidence 655433332211110 0001 12223445566777766654444333333 2344455666665 589999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 010733 259 KLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCM 338 (502)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 338 (502)
.+.+.......++.+++.++.+++.||+++|+ .............+.... .... ....+. ..+.....+.+.
T Consensus 230 ~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~-----~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~~~~~~ 301 (377)
T PRK11102 230 QNFGYYFALNIVFLFVMTIINSRFVRRVGALN-----MLRFGLWIQFIMGIWLVV-SALL-DLGFWA-LVVGVAAFVGCV 301 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-----HHHHHHHHHHHHHHHHHH-HHHH-hhhHHH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999984 222211111111111111 1111 111222 222222333333
Q ss_pred hcCCCCcchhhhhhccCCCCchhhHhHHHhhhh
Q 010733 339 SWNAPATNNPIFAEIVPERCRTSIYALDQSFES 371 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 371 (502)
+.... .......|..| +.++++.++.+....
T Consensus 302 ~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~ 332 (377)
T PRK11102 302 SMISS-NAMAVILDEFP-HMAGTASSLAGTLRF 332 (377)
T ss_pred HHhhH-HHHHHHhcccc-ccchHHHHHHHHHHH
Confidence 33333 34556677766 789999998876654
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=275.37 Aligned_cols=337 Identities=17% Similarity=0.125 Sum_probs=242.3
Q ss_pred hhHHHHhhhccCC---CccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 010733 27 GVYKEVGAALHTD---PTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGL 103 (502)
Q Consensus 27 ~~~~~i~~~~~~s---~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l 103 (502)
+..|.+.+|+|++ +.+.+++.+++.++..++.++.|+++||+|||++++++.++.+++.+++++++|++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5668899999999 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHH
Q 010733 104 NGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVH 183 (502)
Q Consensus 104 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~ 183 (502)
.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ .+||+.|++.+++.++..+..+
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--------~~wr~~~~~~~i~~~~~~~~~~ 261 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI--------PDWRWLQLAVSLPTFLFFLLSW 261 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887665 3599999999998888877777
Q ss_pred hhccCCcccccCCCccCCC----------CCCcc--------hhhhHHH--HHHhhhhhhhhHHHHHHHHHHhhhhhhhH
Q 010733 184 VYANDPRCLAKDGTKIDHK----------PRRPF--------WADIKDL--ITDAKMVIKIPTFQIIVAQGVFGSFSGSA 243 (502)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~----------~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (502)
++||+|++...+++.++.. ..... .++.++. ....+.++++|.++...+.....++....
T Consensus 262 ~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 341 (505)
T TIGR00898 262 FVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF 341 (505)
T ss_pred hcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 7888877643332211100 00000 0000000 01345677777776655544433333222
Q ss_pred HHh-HHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 010733 244 FAF-AAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPS 322 (502)
Q Consensus 244 ~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (502)
..+ ++.+....+.+.. ......++..+++.++.+++.||+|||+. ... .....++ ..+.+...+ ...
T Consensus 342 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~-----~~~-~~~~~~~--~~l~~~~~~-~~~ 409 (505)
T TIGR00898 342 SYYGLVLDLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYT-----MAA-SLLLAGV--ALLLLLFVP-VDL 409 (505)
T ss_pred HHHHHhccccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHH-----HHH-HHHHHHH--HHHHHHHcC-CCc
Confidence 222 3444445566543 33344567788889999999999999842 111 1111111 111111122 111
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHH
Q 010733 323 TAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQ 386 (502)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~ 386 (502)
........++.+++.+...+ ..+.+..|.+|++.|++++|+.++...+|++++|.+.+ +.+
T Consensus 410 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~ 470 (505)
T TIGR00898 410 -YFLRTALAVLGKFGITSAFQ-MVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE 470 (505)
T ss_pred -hHHHHHHHHHHHHHHHHHHH-HHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH
Confidence 12222334444555554445 56889999999999999999999999999999999998 443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=252.55 Aligned_cols=343 Identities=17% Similarity=0.137 Sum_probs=249.0
Q ss_pred HHHHHHHHhhccchhhHHH-HhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHH-HHHHHHHHHHHHHHh
Q 010733 13 FAAIMERADESMLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIA-LGAFLWAAATFLVAF 90 (502)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~-~~~~l~~~~~~~~~~ 90 (502)
+.+++..+......+.+|. +++++|.|+.+.|++.+++.+...+.+++.|+++||+||||.++ .+.++.+++.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 83 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW 83 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence 4466777777777787775 67899999999999999999999999999999999999998755 456666778888999
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhH--HHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHH
Q 010733 91 SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMA--FGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAF 168 (502)
Q Consensus 91 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f 168 (502)
+++++.+++.|+++|.+.+...|...+++.|+.|+++|++. .+....+.++|.++||++++.+.+. .+||+.|
T Consensus 84 ~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~-----~~~~~~f 158 (375)
T TIGR00899 84 NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG-----FGFTVMF 158 (375)
T ss_pred cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh-----cccHHHH
Confidence 99999999999999988888889999999999887777654 5788888999999999999999887 8999999
Q ss_pred HHHHHHHHHHHHHHHh-hccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHHh
Q 010733 169 HLVGLISVIVGVLVHV-YANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFAF 246 (502)
Q Consensus 169 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 246 (502)
++.+++.++..++.++ +||+|+..++++ .+. +.+..++++.++......+.... ......+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (375)
T TIGR00899 159 LTAALAFVLCGVLVWLFLPSYPRGAPGAL-------TRL----------EVRGLLASRDTRLLFVACTLMWGCNILYIIN 221 (375)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccCccccc-------Ccc----------hhhhhhcCcchHHHHHHHHHHHHHHHHHHhh
Confidence 9999887777766655 554433211100 000 11123444555443333333222 2233456
Q ss_pred HHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHH
Q 010733 247 AAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAF 325 (502)
Q Consensus 247 ~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (502)
.|.+++ ++|.++.+.+.......+..+++.++.|++.||+++|+ ...... ..... ..... .. .++ .+
T Consensus 222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~-----~~~~~~--~~~~~-~~~~~-~~--~~~-~~ 289 (375)
T TIGR00899 222 MPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR-----LMLLAA--LAGVA-FYTGL-AA--DNS-LW 289 (375)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh-----HHHHHH--HHHHH-HHHHH-HH--HHH-HH
Confidence 788876 68999999998888777778888999999999999884 221111 11111 11111 11 122 22
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 326 LHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 326 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
.......+.|++.+...+ ....+..|..|+ ++++++++.+...++|..++|.+.|.+.+.. ++.
T Consensus 290 ~~~~~~~~~g~~~g~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-g~~ 353 (375)
T TIGR00899 290 ALLMLQLLNAIFIGILAG-IGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW-SYH 353 (375)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cch
Confidence 233445556666666555 567788888875 5679999999999999999999999999874 543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=253.60 Aligned_cols=351 Identities=11% Similarity=0.133 Sum_probs=257.2
Q ss_pred hHHHHHHHHHHHHHHHhhccchhhHH-HHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 5 TLTLVLVNFAAIMERADESMLPGVYK-EVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
++.+..+.++.++.........+.+| ++.+++|++..++|++.+.+.+++.+++++.|+++||+|||+++.++.++.++
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~ 85 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFAS 85 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence 34455666777777777777666655 56788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcc
Q 010733 84 ATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG 163 (502)
Q Consensus 84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~ 163 (502)
+.++.+++++++.+++.|++.|.+.+...+...++..|.+|+++|++++++.....++|.+++|++++.+.+ .+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~------~g 159 (395)
T PRK10054 86 GFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM------QS 159 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hc
Confidence 999999999999999999999988888888899999999999999999999999999999999999998874 68
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-hccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhhh-
Q 010733 164 WRLAFHLVGLISVIVGVLVHV-YANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSG- 241 (502)
Q Consensus 164 w~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 241 (502)
|+.+|++.++..++..++..+ .+++++.+++ + +++ ..+.++.+++|.++......++....+
T Consensus 160 ~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~--~------~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (395)
T PRK10054 160 INLPFWLAAICSAFPLVFIQIWVQRSEKAIAT--E------TGS--------VWSPSVLLQDKALLWFTCSGFLASFVSG 223 (395)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhcccccccc--c------hhh--------hhhhhhhccCceehHHHHHHHHHHHHHH
Confidence 999999988877776555444 4443321110 0 000 011245667777765554444433322
Q ss_pred hHHHhHHHHHH---HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcC
Q 010733 242 SAFAFAAMWLE---LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLP 318 (502)
Q Consensus 242 ~~~~~~~~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (502)
....+.+.++. +.+.+....+.+.....+.........+++.||.++|+. ... .+.+...........
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----l~~----~~~~~~~~~~~~~~~ 294 (395)
T PRK10054 224 AFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPL-----MTA----GTLCFVIGLVGFIFS 294 (395)
T ss_pred HhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhH-----HHH----HHHHHHHHHHHHHHc
Confidence 23345566654 345666677778877777777777888999999887741 111 111111111111111
Q ss_pred CCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcC
Q 010733 319 DDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGY 391 (502)
Q Consensus 319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~ 391 (502)
.+..+...+.....+++.+...+ ...+.+.+..|++.++++.+..+ ...+|..+||.++|.+.|+. ++
T Consensus 295 --~~~~~~~~~~~~~~~~g~~~~~p-~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~-g~ 362 (395)
T PRK10054 295 --GNSLLLWGMSAAVFTVGEIIYAP-GEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL-PP 362 (395)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc-Ch
Confidence 12223334456677777776666 66788899999999999998765 66789999999999999985 44
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-30 Score=245.09 Aligned_cols=400 Identities=15% Similarity=0.177 Sum_probs=285.1
Q ss_pred HHHHHHHHhhccchhhHHHHhh--------hccC--CCcc----chHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHH
Q 010733 13 FAAIMERADESMLPGVYKEVGA--------ALHT--DPTG----LGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGA 78 (502)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~i~~--------~~~~--s~~~----~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~ 78 (502)
++.+-.++....+++..+.+.+ .+|. ++.+ .+.+.+++.+|.++|++..|.++||+|||..+.++.
T Consensus 18 ~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~ 97 (485)
T KOG0569|consen 18 LGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSN 97 (485)
T ss_pred HhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3334455666666665444333 3443 3322 467889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh---hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHH-HH
Q 010733 79 FLWAAATFLVAFS---STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVL-IA 154 (502)
Q Consensus 79 ~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~-l~ 154 (502)
++..++.++..++ +++..++++|++.|+..|........++.|..|.+.||....+.+.+..+|.+++..++.. +.
T Consensus 98 ~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~il 177 (485)
T KOG0569|consen 98 LLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLL 177 (485)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhc
Confidence 9888888777664 6889999999999999999999999999999999999999999999999999999777643 32
Q ss_pred hhccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCccccc-CCCccCCC-------CC---Ccchhh----hHH------
Q 010733 155 STSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAK-DGTKIDHK-------PR---RPFWAD----IKD------ 213 (502)
Q Consensus 155 ~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~---~~~~~~----~~~------ 213 (502)
.+ ...|++.+....+++++..+...++||+|++.-. ++++++.. .. ++..++ .++
T Consensus 178 Gt----~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~ 253 (485)
T KOG0569|consen 178 GT----EDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKK 253 (485)
T ss_pred CC----CcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccc
Confidence 22 2679999999999999999999999999999765 23222110 00 000000 000
Q ss_pred HHHHhhhhhhhhHHHH-----HHHHHHhhhh-hhhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhh
Q 010733 214 LITDAKMVIKIPTFQI-----IVAQGVFGSF-SGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILA 287 (502)
Q Consensus 214 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 287 (502)
.....+++++++..+. +.......+. .+....|...++++.|++..++.+.....++..++.++++.++.||+|
T Consensus 254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~g 333 (485)
T KOG0569|consen 254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLG 333 (485)
T ss_pred cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0012334555544332 2222222222 235556788888899999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHH-HHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhH
Q 010733 288 QRLPDSGRVILSQIS-AASVIPTAAVLLLVLPDDPS-TAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYAL 365 (502)
Q Consensus 288 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 365 (502)
||+ +++.... ..+...+............+ ..+..+.+.+...++.+....|+.+-+.+|++|++.|+.++++
T Consensus 334 RRp-----Lll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~ 408 (485)
T KOG0569|consen 334 RRP-----LLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSV 408 (485)
T ss_pred CcH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHH
Confidence 995 2222221 11111111111111111111 1122345555666666666556789999999999999999999
Q ss_pred HHhhhhhhhchhHHHHHHHHHHHhcCCCCCCCCCCcchhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Q 010733 366 DQSFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAIYAAMSIPMAICCIIYSFLYCSYPNDRG 445 (502)
Q Consensus 366 ~~~~~~~~~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (502)
...++++..++....+..+.+..+++ .+..+.+.+++..++.++..||+|+
T Consensus 409 ~~~~~w~~~fiv~~~fp~l~~~~g~~-----------------------------~filF~i~~~~~~i~~~~~lPETkg 459 (485)
T KOG0569|consen 409 ATAVNWLSNFIVGFAFPPLQNVIGPY-----------------------------VFILFVIPLAIFLIYLYRYLPETKG 459 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcch-----------------------------hhHHHHHHHHHHHHHHHHhCcccCC
Confidence 99999999999999999998886443 3355566777888888999999998
Q ss_pred cccch
Q 010733 446 QATTD 450 (502)
Q Consensus 446 ~~~~~ 450 (502)
|...|
T Consensus 460 r~~~e 464 (485)
T KOG0569|consen 460 RTPYE 464 (485)
T ss_pred CCHHH
Confidence 87544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-30 Score=250.30 Aligned_cols=352 Identities=14% Similarity=0.117 Sum_probs=258.4
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHH
Q 010733 7 TLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATF 86 (502)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~ 86 (502)
.+..+++.+++.++.....++++|.+++++|.|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.+
T Consensus 4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~ 83 (410)
T TIGR00885 4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAF 83 (410)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 46677888888999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHh---hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccC----
Q 010733 87 LVAF---SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFM---- 159 (502)
Q Consensus 87 ~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~---- 159 (502)
++.. .++++.+++.|++.|+|.|...+...+++.+..|+++|++.+++.+...++|..++|.++..+......
T Consensus 84 l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~ 163 (410)
T TIGR00885 84 LFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQ 163 (410)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence 8654 358999999999999999999999999999999999999999999999999999999999888643100
Q ss_pred -----------------CCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhh
Q 010733 160 -----------------GIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVI 222 (502)
Q Consensus 160 -----------------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (502)
+..+||++|++.+++.++..++..+. +.|+.++.+ + + +... + .+.++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~-~~p~~~~~~--~-~---~~~~----~---~~~~~~~ 229 (410)
T TIGR00885 164 DVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLT-KMPALNHSD--A-K---QISF----S---ASLSRLA 229 (410)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCccc--c-c---cccc----h---hhHHHHH
Confidence 11469999999988777665554332 222211110 0 0 0000 1 1223456
Q ss_pred hhhHHHHHHHHHHhhhhhh-hHHHhHHHHHHHh--CCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHH
Q 010733 223 KIPTFQIIVAQGVFGSFSG-SAFAFAAMWLELI--GFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILS 299 (502)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 299 (502)
++|.++...+..++..... ...++++.|.++. +.+...++...+.......+|+++++++.||+++|+ .+..
T Consensus 230 ~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~-----~l~i 304 (410)
T TIGR00885 230 RIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK-----VLMA 304 (410)
T ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-----HHHH
Confidence 6777766555555544433 5557888888754 445555565666667888999999999999998884 2111
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHH
Q 010733 300 QISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPA 379 (502)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~ 379 (502)
......++ ..+.... ++.. ....+...|++.+..+| ..++...+..+++.+..+.++...+ +|+.+.|+
T Consensus 305 -~~~~~~~~---~ll~~~~--~~~~--~~~~l~~~glf~s~~fp-~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~ 373 (410)
T TIGR00885 305 -YAIIGMAL---CLGSIFA--GGHV--GLYCLTLCSAFMSLMFP-TIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPP 373 (410)
T ss_pred -HHHHHHHH---HHHHHHc--CChH--HHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHH
Confidence 11111111 1111111 1111 23456667777777777 8889999999876654455554443 99999999
Q ss_pred HHHHHHHHH
Q 010733 380 VVGILAQHV 388 (502)
Q Consensus 380 ~~g~l~~~~ 388 (502)
+.|.+.|..
T Consensus 374 l~G~~~d~~ 382 (410)
T TIGR00885 374 LQGFIIDMK 382 (410)
T ss_pred HHHHHHHHh
Confidence 999999963
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-31 Score=252.50 Aligned_cols=337 Identities=16% Similarity=0.174 Sum_probs=246.0
Q ss_pred hhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010733 21 DESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVS 100 (502)
Q Consensus 21 ~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 100 (502)
.....++.+|.+.+++|.|+++.|++.+.+.+++.++.++.|++.||+|||+++.++.++..++.+++ .+++++.+++.
T Consensus 15 ~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 93 (355)
T TIGR00896 15 ALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAG 93 (355)
T ss_pred ccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999988888887 78899999999
Q ss_pred HHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHH
Q 010733 101 RGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGV 180 (502)
Q Consensus 101 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~ 180 (502)
|++.|++.+...+....++.|++| ++|++++++.+.+.++|..+++.+++.+.+.. ..+||+.|.+.++..++...
T Consensus 94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~---~~~w~~~f~~~~~~~~~~~~ 169 (355)
T TIGR00896 94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS---GGHWQQALAWWALPALLALL 169 (355)
T ss_pred HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHH
Confidence 999999999888888889999986 68999999999999999999999998887651 02399999887665443322
Q ss_pred HHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhh-hhhhHHHhHHHHHHHhCCChh
Q 010733 181 LVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGS-FSGSAFAFAAMWLELIGFSHK 259 (502)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~ 259 (502)
...++.++.++.+ +. . .+ ...++.+++|.++.......+.. ..+....|+|.++++.|++..
T Consensus 170 --~~~~~~~~~~~~~-~~---~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~ 232 (355)
T TIGR00896 170 --AWIPQVRRRVAAN-QT---T-TR----------LTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAA 232 (355)
T ss_pred --HHhhhhccccCCC-CC---C-CC----------CCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 2233322111110 00 0 00 11234455666665444433333 344666789999998899999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 010733 260 LTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMS 339 (502)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 339 (502)
+.+.+.+...++.++++++.|++.||+++|+ +.... ......+. .......... ... ....+.|++.+
T Consensus 233 ~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~----~~~~~-~~~~~~~~---~~~~~~~~~~-~~~---~~~~l~g~~~g 300 (355)
T TIGR00896 233 TAGSLLALMQLAQAASALLIPALARRVKDQR----GIVAV-LAVLQLVG---LCGLLFAPMH-GLW---AWALVLGLGQG 300 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhccch----HHHHH-HHHHHHHH---HHHHHHhhhh-HHH---HHHHHHHHhhh
Confidence 9999999999999999999999999996553 11111 11111111 1111111111 111 13455677777
Q ss_pred cCCCCcchhhhhhcc-CCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 340 WNAPATNNPIFAEIV-PERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 340 ~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
...+ ...+.+.+.. ++++++...++.+.+.++++.++|.+.|.+.|+.++|.
T Consensus 301 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 301 GAFP-LALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred hHhH-HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 7766 4455555444 45667899999999999999999999999999976554
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-30 Score=248.00 Aligned_cols=327 Identities=25% Similarity=0.416 Sum_probs=271.1
Q ss_pred HHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHH
Q 010733 10 LVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVA 89 (502)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~ 89 (502)
.+.+..+....+.....+..|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+.++..++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~ 82 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA 82 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence 45667788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHH
Q 010733 90 FSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFH 169 (502)
Q Consensus 90 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~ 169 (502)
+.++++.+++.|++.|++.+...+...+++.|++|+++|++.+++.+....+|..+++.+++.+.+. .+||+.|+
T Consensus 83 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~ 157 (352)
T cd06174 83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES-----LGWRWLFL 157 (352)
T ss_pred HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 78999999
Q ss_pred HHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHHhHH
Q 010733 170 LVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFAFAA 248 (502)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 248 (502)
+.+++.++..+...+.+ |.++......+.... ......+.|
T Consensus 158 ~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (352)
T cd06174 158 ILAILGLLLALLLLFLL--------------------------------------RLLLLLALAFFLLSFGYYGLLTYLP 199 (352)
T ss_pred HHHHHHHHHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99888887777766554 122333333333333 345556888
Q ss_pred HHHHH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHH
Q 010733 249 MWLEL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLH 327 (502)
Q Consensus 249 ~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (502)
.+.++ .|.+..+.+.......++..++.++.+++.||+++|+. .... .... ..+... .... .++ ....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~--~~~~-~~i~~~-~~~~--~~~-~~~~ 268 (352)
T cd06174 200 LYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL----LLLI--GLLL-AALGLL-LLAL--APS-LALL 268 (352)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHH--HHHH-HHHHHH-HHHH--hcc-HHHH
Confidence 88886 49999999999999999999999999999999999841 1111 1111 111111 1111 112 3445
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 328 GLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 328 ~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
....++.|++.+...+ ....+..|..|+++|++.+|+.+...+++..++|.+.|.+.|. .++.
T Consensus 269 ~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~-~~~~ 331 (352)
T cd06174 269 LVALLLLGFGLGFAFP-ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT-GGYG 331 (352)
T ss_pred HHHHHHHHHHHhccch-hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcc
Confidence 5677788888888887 8899999999999999999999999999999999999999886 3443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-31 Score=257.10 Aligned_cols=352 Identities=15% Similarity=0.169 Sum_probs=246.8
Q ss_pred HHHHHhhccchhhHHHHhhhcc--CCCccchHHHHH-----HHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHH
Q 010733 16 IMERADESMLPGVYKEVGAALH--TDPTGLGSLTLF-----RSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLV 88 (502)
Q Consensus 16 ~~~~~~~~~~~~~~~~i~~~~~--~s~~~~g~~~s~-----~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~ 88 (502)
+.+++++..++...+.+.+++. .++++.+.+.+. ..++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888864 445566665543 233344688999999999999999999999999999999
Q ss_pred HhhhhHH--------HHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhc---
Q 010733 89 AFSSTFF--------QVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTS--- 157 (502)
Q Consensus 89 ~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~--- 157 (502)
+++++++ .+++.|+++|++.+...+...+++.|++|+++|++..++.+.+..+|.++++.++..+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9999875 47889999999999999999999999999999999999999999999999999887664310
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhH--HHHHHHHHH
Q 010733 158 FMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPT--FQIIVAQGV 235 (502)
Q Consensus 158 ~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 235 (502)
.....+||+.|++.+++.++...+....+|+++...++++.+ +..++.++ .++++. ++......+
T Consensus 163 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-------~~~~~~~~~~~~~~~~~ 229 (394)
T TIGR00883 163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHK------KKRGPIRE-------TLTKHRKPFLLGLGLVI 229 (394)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhccc------cccCCHHH-------HHHhchHHHHHHHHHHH
Confidence 001279999999887776655544444554443222111110 01111122 222222 333333333
Q ss_pred hh-hhhhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 010733 236 FG-SFSGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVL 313 (502)
Q Consensus 236 ~~-~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
.. ...+....+.|.|++ ++|.++.+.+.......++..++.++.|++.||++||+ ...... ...... ....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~~~~~~-~~~~~~-~~~~ 302 (394)
T TIGR00883 230 ATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP-----VLIIFT-VLAALL-AVPL 302 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH-----HHHHHH-HHHHHH-HHHH
Confidence 33 333455578999986 68999999999999999999999999999999999884 222111 111111 1111
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHH-hhhhhhhchhHHHHHHHHHHHh
Q 010733 314 LLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQ-SFESIPSSFAPAVVGILAQHVY 389 (502)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~~~~i~~~~~g~l~~~~~ 389 (502)
+......+ .........+..+++.+...+ ...++..|.+|++.|+++.++.. ....+++.++|.+.|.+.|+.+
T Consensus 303 ~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 303 LMALLDSG-SFTLFFFLVLGLALIGGMYTG-PMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred HHHHhcCC-chHHHHHHHHHHHHHHHHHhh-hHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 11111112 223334455666777666666 67899999999999999999854 4456788899999999999853
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-29 Score=251.06 Aligned_cols=356 Identities=14% Similarity=0.138 Sum_probs=250.4
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhcc-----CchHH-HHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHH-----NRAHV-IALGAFLW 81 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-----G~r~~-~~~~~~l~ 81 (502)
...+++..+..+......+..+|.+.++.|.+.+++|.+ +.....+ ++.+++|+++||+ ||||. +..+.++.
T Consensus 14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~ 91 (491)
T PRK11010 14 SAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL 91 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence 445666667777778888888999999999999999987 4444444 5889999999999 99985 66888888
Q ss_pred HHHHHHHHhh---hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHh-hc
Q 010733 82 AAATFLVAFS---STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAS-TS 157 (502)
Q Consensus 82 ~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-~~ 157 (502)
+++..++++. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++.+ .
T Consensus 92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~- 170 (491)
T PRK11010 92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRY- 170 (491)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 7887777775 4788999999999999999999999999999999999999999999999999999999999988 4
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhh
Q 010733 158 FMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFG 237 (502)
Q Consensus 158 ~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (502)
.|||..|++.+++.++..+..++.+| ++...++ + + ... +....+.++.++++..+......+..
T Consensus 171 ----~GWr~~f~i~a~l~ll~~l~~~~~~e-~~~~~~~--~-~-----~~~---~~~~~~l~~~~~~~~~~~~ll~~~l~ 234 (491)
T PRK11010 171 ----LGWQGMYWLMAALLIPCIIATLLAPE-PTDTIPV--P-K-----TLE---QAVVAPLRDFFGRNNAWLILLLIVLY 234 (491)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHHhcCC-Ccccccc--c-c-----chh---hhHHHHHHHHHcCcCHHHHHHHHHHH
Confidence 69999999999887777665555443 3211100 0 0 000 11122344455555544333332322
Q ss_pred -hhhhhHHHhHHHHHH-HhCCChhHHHHHHH-HHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 010733 238 -SFSGSAFAFAAMWLE-LIGFSHKLTAFLMT-LFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLL 314 (502)
Q Consensus 238 -~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (502)
........+.+.|+. ++|++..+.+.... ...++.+++.+++|++.||+++|+ ...... ....+.......
T Consensus 235 ~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~-----~l~i~~-~l~~l~~l~~~~ 308 (491)
T PRK11010 235 KLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR-----ALMIFG-ILQGVSNAGYWL 308 (491)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHH-HHHHHHHHHHHH
Confidence 223344456677765 68999999999874 556799999999999999999874 221111 111111111111
Q ss_pred hhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 315 LVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
.... .++ ...+....++..++.+...+ ...++..+..+++.+++..|+.+....+++.+++++.|.+.|.. ||.
T Consensus 309 l~~~-~~~-~~~l~~~~~l~~~~~g~~~~-~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~-G~~ 382 (491)
T PRK11010 309 LSIT-DKN-LYSMGAAVFFENLCGGMGTA-AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH-GWP 382 (491)
T ss_pred HHhc-ccc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChH
Confidence 1111 122 22222233333333333333 45778888999999999999999999999999999999999984 553
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-31 Score=258.33 Aligned_cols=280 Identities=18% Similarity=0.257 Sum_probs=229.0
Q ss_pred HHHHHHHHHHHHHHHhhccchh-hHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPG-VYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAA 84 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~ 84 (502)
.++..++..++....+...++- .+..+.+|.+....+.+.+.++++++++++.+++|.+.||++..+.+....+.+++.
T Consensus 45 ~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~ 124 (495)
T KOG2533|consen 45 FILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLF 124 (495)
T ss_pred HHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHH
Confidence 4455666666777777665443 344567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhh-ccCCCcc
Q 010733 85 TFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST-SFMGIPG 163 (502)
Q Consensus 85 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-~~~~~~~ 163 (502)
.++....+|++.+++.|++.|+.++..+|....+++.|+.++||++.++++.+..++|.++|++++..+.+. +..+..|
T Consensus 125 ~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g 204 (495)
T KOG2533|consen 125 GFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG 204 (495)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC
Confidence 999988999999999999999999999999999999999999999999999999999999999999987652 2234589
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-hccCCcc---cccCCC-----ccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHH
Q 010733 164 WRLAFHLVGLISVIVGVLVHV-YANDPRC---LAKDGT-----KIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQG 234 (502)
Q Consensus 164 w~~~f~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (502)
|||.|++.|++.++.+++.++ +|++|.. ..++++ +.++...+...+ +..+...++.+++|..|.+.+..
T Consensus 205 W~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~dp~vw~~~l~~ 282 (495)
T KOG2533|consen 205 WRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIEN--KFKWKGFKEALKDPGVWPFSLCY 282 (495)
T ss_pred ceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCccc--ccCHHHHHHHHhchhHHHHHHHH
Confidence 999999999999999988777 6666652 222110 111111111111 13445667888888888887777
Q ss_pred Hhhhh-hhhHHHhHHHHHHH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhh
Q 010733 235 VFGSF-SGSAFAFAAMWLEL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILA 287 (502)
Q Consensus 235 ~~~~~-~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 287 (502)
++... .++..+|+|.++++ .|+|..+++.+..+..++++++.+++|+++||.+
T Consensus 283 ~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~ 337 (495)
T KOG2533|consen 283 FFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK 337 (495)
T ss_pred HHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh
Confidence 76666 56788899999997 6799999999999999999999999999999953
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-29 Score=245.35 Aligned_cols=344 Identities=13% Similarity=0.017 Sum_probs=255.2
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHH----HHHHHHHHHHH
Q 010733 9 VLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHV----IALGAFLWAAA 84 (502)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~----~~~~~~l~~~~ 84 (502)
..+.+.++..+.......|.+|.+.+++|.|..++|++.+++.+...++++++|+++||+|||+. +.++..+..+
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~- 85 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA- 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence 44667788888888889999999999999999999999999999999999999999999998543 2333322222
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcch
Q 010733 85 TFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGW 164 (502)
Q Consensus 85 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w 164 (502)
..+.++++++.+++.|+++|.+.+...|...++..++ +++|++..|......++|.+++|++++.+.++ .||
T Consensus 86 -~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~-----~g~ 157 (382)
T TIGR00902 86 -AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM-----FDE 157 (382)
T ss_pred -HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH-----cCh
Confidence 3445778999999999999999988899998887665 47789999999999999999999999999998 899
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhh-hhH
Q 010733 165 RLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFS-GSA 243 (502)
Q Consensus 165 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 243 (502)
|..|++.++.. +..++.+..++++++.++++ ++ +.+ ..++.++++|+|.++......++.... ...
T Consensus 158 ~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~---~~~-------~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~ 224 (382)
T TIGR00902 158 QNILAILTAGL-AFMLIGFLIKPTIPPKDAIP--ED---ESQ-------GDSAFIALLKNPMNLRFLAAVCLIQGAHAAY 224 (382)
T ss_pred hHHHHHHHHHH-HHHHHHHHcCCCCCCCcccc--cc---ccc-------cchhHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 99999876553 33333333444322111110 00 000 112345677888887766655554443 455
Q ss_pred HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCch
Q 010733 244 FAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPST 323 (502)
Q Consensus 244 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (502)
..+.|.|+++.|.++.+.|.+.....++.+++..+.+++.||+++|+ .+. .+.....+........+ +
T Consensus 225 ~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~-----~l~------~~~~~~~~~~~~~~~~~-~ 292 (382)
T TIGR00902 225 YGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD-----LLL------ISAIACVGRWAIIGAIE-A 292 (382)
T ss_pred HHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH-----HHH------HHHHHHHHHHHHHHhHh-h
Confidence 56889999999999999999999989999999999999999999884 111 11111111111112222 3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHh-hhhhhhchhHHHHHHHHHHH
Q 010733 324 AFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQS-FESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 324 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~~~~i~~~~~g~l~~~~ 388 (502)
.+.+.....+.|+..+...+ ....++.+. |+++++++.++++. ...+|..++|.+.|.+.|..
T Consensus 293 ~~~~~~~q~l~g~~~~~~~~-~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~ 356 (382)
T TIGR00902 293 FPLIFLLQILHCGTFAVCHL-AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL 356 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445567888888888887 678888887 88899999999874 56789999999999999985
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=238.75 Aligned_cols=345 Identities=14% Similarity=0.112 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHH-HhhhccCCCccchHHHHHHHH-HHHHhhhhhhHhhhccCchHHH-HHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKE-VGAALHTDPTGLGSLTLFRSI-VQSFCYPLAAYLSAHHNRAHVI-ALGAFLWA 82 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l-~~~~~~~~~G~l~dr~G~r~~~-~~~~~l~~ 82 (502)
+......+..++.........+.+|. +.+++|.+++++|++.+...+ ++.++.+++|+ .||+||||.+ ..+.++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~ 93 (393)
T PRK15011 15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGV 93 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHH
Confidence 33455566677777777776776665 678999999999999876655 55555555555 9999999874 56667777
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccc--hhHHHHHHHHHhhhHhHHHHHHHHHHhhccCC
Q 010733 83 AATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNR--GMAFGWLQLTGYLGSVLGGFCSVLIASTSFMG 160 (502)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~ 160 (502)
++..+.+++++++.+++.+.+.|...+...|...+++.++.++++| +...++.+.+.++|.++||++++.+.++
T Consensus 94 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~---- 169 (393)
T PRK15011 94 LACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG---- 169 (393)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh----
Confidence 8888889999999987766665555567888888999888776655 3445788999999999999999999987
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHh-hccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhH-HHHHHHHHHhhh
Q 010733 161 IPGWRLAFHLVGLISVIVGVLVHV-YANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPT-FQIIVAQGVFGS 238 (502)
Q Consensus 161 ~~~w~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 238 (502)
.|||..|++.++..++..++.+. .||+++.++ +.+. + .+..+ + +++. ++..........
T Consensus 170 -~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~---~~~~~-------~--~~~~~~~~~~~~~~~~~ 230 (393)
T PRK15011 170 -FSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELP-LATG-----T---LEAPR-------R--NRRDTLLLFVICTLMWG 230 (393)
T ss_pred -cChHHHHHHHHHHHHHHHHHHHhhcCccCCCCc-cccc-----c---ccccc-------c--ccccHHHHHHHHHHHHH
Confidence 89999999998888777766655 444322111 1000 0 00000 0 0111 222222222222
Q ss_pred hhhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhc
Q 010733 239 FSGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVL 317 (502)
Q Consensus 239 ~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (502)
..+....+.|.|++ ++|+++.+++.+.....++.+++.++.|+++||+++|+ ..... ....... .. ....
T Consensus 231 ~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~-----~~~~~--~~~~~~~-~~-~~~~ 301 (393)
T PRK15011 231 TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF-----LMRVA--AVAGVCF-YA-GMLM 301 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-----HHHHH--HHHHHHH-HH-HHHH
Confidence 22234457888887 58999999998888877888899999999999999984 22211 1111111 11 1111
Q ss_pred CCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 318 PDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 318 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
. ++.+ ......++.+++.+...+ ....+..|..|+ .+++++++.+...++|..++|.+.|.+.|..
T Consensus 302 ~--~~~~-~~l~~~~l~~~~~g~~~~-~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~ 367 (393)
T PRK15011 302 A--HSPA-ILLGLQLLNAIYIGILGG-IGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIW 367 (393)
T ss_pred H--hhHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1222 222333334444444333 345667888875 5999999999999999999999999999874
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=256.85 Aligned_cols=425 Identities=14% Similarity=0.167 Sum_probs=293.9
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHH
Q 010733 9 VLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLV 88 (502)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~ 88 (502)
...++..+.........+..++.++++|+++.++.|++.+.+.++++++.++.|+++||+|||+++.++.++++++++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 44455677777788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh---------------------------------------------------hHHHHHHHHHHHHhhhhhhhhHHHH
Q 010733 89 AFSS---------------------------------------------------TFFQVAVSRGLNGIGLAIVIPAIQS 117 (502)
Q Consensus 89 ~~~~---------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~ 117 (502)
++.+ .+..++++|+++|+|.+..++...+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 8763 2456788999999999999999999
Q ss_pred HHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccC-------------CC----cchhHHHHHHHHHHHHHHH
Q 010733 118 LVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFM-------------GI----PGWRLAFHLVGLISVIVGV 180 (502)
Q Consensus 118 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~-------------~~----~~w~~~f~~~~~~~~~~~~ 180 (502)
++.|++|+++|+++++++..+..+|.++|+++++++.+...+ .+ .+|+..|++.+++.++.++
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998864210 00 1378889999988888877
Q ss_pred HHHhhccCCcccccCC--Ccc--CC--CCCCcc----hhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHHhHHH
Q 010733 181 LVHVYANDPRCLAKDG--TKI--DH--KPRRPF----WADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFAFAAM 249 (502)
Q Consensus 181 ~~~~~~~~~~~~~~~~--~~~--~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 249 (502)
..+++|++.+....+. +.+ +. +..+.. ....++..+..+.++++|.++...+..++... .++..+|+|.
T Consensus 276 ~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~ 355 (633)
T TIGR00805 276 PFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPK 355 (633)
T ss_pred HHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776543221110 000 00 000001 11234455677889999999888777666555 4567789999
Q ss_pred HHH-HhCCChhHHHHHHHHHHH-HHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhh-----------
Q 010733 250 WLE-LIGFSHKLTAFLMTLFVI-AFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLV----------- 316 (502)
Q Consensus 250 ~~~-~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 316 (502)
|++ ++|+++.+++++.....+ +.+++.+++|++.||++.+... ..........+.+......++.
T Consensus 356 yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~C~~~~~agv~ 433 (633)
T TIGR00805 356 YLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKK--AAYFAICLSTLSYLLCSPLFLIGCESAPVAGVN 433 (633)
T ss_pred HHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHH--HHHHHHHHHHHHHHHHHHHHeecCCCCccceee
Confidence 998 699999999999988776 5689999999999999855211 1111111111111110100000
Q ss_pred ------------c---------CC----------------------------------------------------C---
Q 010733 317 ------------L---------PD----------------------------------------------------D--- 320 (502)
Q Consensus 317 ------------~---------~~----------------------------------------------------~--- 320 (502)
. .. -
T Consensus 434 ~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~~~ 513 (633)
T TIGR00805 434 NPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAKKGLCNPP 513 (633)
T ss_pred ccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCCCCcCCCCCcc
Confidence 0 00 0
Q ss_pred -CchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhh-hhchhHHHHHHHHHHHhcCCCCCCCC
Q 010733 321 -PSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESI-PSSFAPAVVGILAQHVYGYKPIPQDA 398 (502)
Q Consensus 321 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~i~~~~~g~l~~~~~~~~~~~~~~ 398 (502)
......+++.+++..+..+.... .....+.+.+|+++|..+.|+...+.++ |.+-+|.+.|+++|..--.-...
T Consensus 514 C~~~~~~f~~~~~~~~~~~~~~~~-p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~sC~~W~~~--- 589 (633)
T TIGR00805 514 CATSLLYFLILFIPLSFIAFITAV-PLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDVSCLHWQTL--- 589 (633)
T ss_pred cchhHHHHHHHHHHHHHHHHhccC-chheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhchhheeccc---
Confidence 00012233333333343344444 3567778889999999999999988866 55779999999999852211000
Q ss_pred CCcchhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010733 399 SNSVEIETDRENAASLAKAIYAAMSIPMAICCIIYSFLYCS 439 (502)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (502)
.-...-..-.++.+.+++.+......+-.++.+...+.++.
T Consensus 590 ~cg~~g~C~~Yd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (633)
T TIGR00805 590 CCGARGACRMYDNDNLRNIYLGLTIALRGSGLLLLFFILIL 630 (633)
T ss_pred cCCCCCceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 00001134456667777766655555555555555544444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=246.93 Aligned_cols=372 Identities=17% Similarity=0.225 Sum_probs=288.4
Q ss_pred hHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHH
Q 010733 5 TLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAA 84 (502)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~ 84 (502)
|.++...++..+........++.+.+.++++++.+.++++|+.++....+.+..|+.+.+.||||.|.+.++|.++.+++
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g 124 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALG 124 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHH
Confidence 55566666667666666677888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHH-HHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcc
Q 010733 85 TFLVAFSSTFFQVAVS-RGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG 163 (502)
Q Consensus 85 ~~~~~~~~~~~~l~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~ 163 (502)
.++.+|++++|++++. -++.|+|.|..+.....++..||+ ++|+.+.|+...+.++|.++-|.+...+.+. +|
T Consensus 125 ~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~-----~G 198 (509)
T KOG2504|consen 125 LLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSK-----YG 198 (509)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHH-----hC
Confidence 9999999999988765 788999999999999999998884 7899999999999999999999999999998 99
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcc-CCccccc-------------------CCCc---cCCC------------CCCcch
Q 010733 164 WRLAFHLVGLISVIVGVLVHVYAN-DPRCLAK-------------------DGTK---IDHK------------PRRPFW 208 (502)
Q Consensus 164 w~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------------~~~~---~~~~------------~~~~~~ 208 (502)
||+.+++.+.+.+-..+......+ .++..+. +.+. +... ..+..+
T Consensus 199 ~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (509)
T KOG2504|consen 199 WRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKW 278 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccc
Confidence 999999999888766666555433 1111000 0000 0000 001111
Q ss_pred h--hhHHHH-HHhhhhhhhhHHHHHHHHHHhhhhhh-hHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhh
Q 010733 209 A--DIKDLI-TDAKMVIKIPTFQIIVAQGVFGSFSG-SAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGD 284 (502)
Q Consensus 209 ~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 284 (502)
. ..+... ....++++++.++.+.....+....+ ....++|.+.+.+|++..+++.+.+..++..++++++.|++.|
T Consensus 279 ~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD 358 (509)
T KOG2504|consen 279 RNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLAD 358 (509)
T ss_pred cccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcC
Confidence 1 111111 11257888899988888777777755 4456899999999999999999999999999999999999999
Q ss_pred hhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHh
Q 010733 285 ILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYA 364 (502)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 364 (502)
+...++ .... .+++....+.....+..++ ...+.....++|++.+.... .....+.|..+.++-..+.|
T Consensus 359 ~~~~~~-----~~~~----~~~ll~~gl~~~~~p~~~~-~~~l~~~~~~fG~~~g~~~~-l~~~i~~~~~g~~~l~~a~G 427 (509)
T KOG2504|consen 359 KPGIRA-----LVLF----LLTLLIAGLARLFLPFATT-YVGLIVFSILFGFCVGSFSS-LTPVILVDLVGLEKLSNAYG 427 (509)
T ss_pred ccccch-----HHHH----HHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcChhhcchHHH
Confidence 987543 1111 1112222222222333333 34455667778888888777 66678999999999999999
Q ss_pred HHHhhhhhhhchhHHHHHHHHHHHhcCCC
Q 010733 365 LDQSFESIPSSFAPAVVGILAQHVYGYKP 393 (502)
Q Consensus 365 ~~~~~~~~~~~i~~~~~g~l~~~~~~~~~ 393 (502)
+...++.++..+||++.|.+.|..++|+.
T Consensus 428 l~l~~~gi~~l~gpPiag~~~d~tg~Y~~ 456 (509)
T KOG2504|consen 428 LLLLFQGIGALVGPPIAGLLYDITGNYDH 456 (509)
T ss_pred HHHHHhHHHHHcCcccceeeeeccCCeee
Confidence 99999999999999999999999877764
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-28 Score=238.68 Aligned_cols=355 Identities=17% Similarity=0.222 Sum_probs=270.7
Q ss_pred hHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHH
Q 010733 5 TLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAA 84 (502)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~ 84 (502)
.+.+..++++.++..++..+....++.+..+..-|+..++++.++..+...+.++++|.++||++|||+++.+.++.++.
T Consensus 9 ~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~ 88 (524)
T PF05977_consen 9 NRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALV 88 (524)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 34566778888888888888888888888888889999999999999999999999999999999999999999888776
Q ss_pred HHHHHhh-----hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccC
Q 010733 85 TFLVAFS-----STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFM 159 (502)
Q Consensus 85 ~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 159 (502)
.++.++. .+.|.+++.-++.|++.+...|+.++++.+..|+++..+++++.+...++..++||.++|.+...
T Consensus 89 ~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~--- 165 (524)
T PF05977_consen 89 ALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF--- 165 (524)
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH---
Confidence 6655543 37889999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh
Q 010733 160 GIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF 239 (502)
Q Consensus 160 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (502)
.|-.+.|.+.++..++.........++++..+ . +.+..+++.+ ...+.+.++|.....+...+....
T Consensus 166 --~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~--~------~~e~~~~~l~---~G~ryv~~~~~l~~~l~~~~~~~l 232 (524)
T PF05977_consen 166 --FGAAAAFLINALSFLISILALLRWKPPPPPSS--L------PRERFFSALR---EGLRYVRSSPPLRSVLLRSFLFNL 232 (524)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHccccccccc--c------chhhhhhhHH---HHHHHHhcchHHHHHHHHHHHHHH
Confidence 88899999987766655444333332211110 0 0111222222 333444556665554443333333
Q ss_pred -hhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhc
Q 010733 240 -SGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVL 317 (502)
Q Consensus 240 -~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (502)
.......+|.+.+ .+|.++...|++.+..++++++|.++.+++.+|+++++. ... . .....+.+...
T Consensus 233 ~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~l-----v~~-~-----~~~~a~~~~~l 301 (524)
T PF05977_consen 233 FASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRL-----VLL-A-----SLLFALALLLL 301 (524)
T ss_pred hhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchh-----hHH-H-----HHHHHHHHHHH
Confidence 2344456898887 589999999999999999999999999999888877641 111 1 11111112222
Q ss_pred CCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 318 PDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 318 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
...+ +.+...+.+++.|++...... ...+..++..|++.||++++++++....+..+|..+.|.+.+..
T Consensus 302 al~~-~~~~~~~~l~l~G~~~~~~~~-~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~ 370 (524)
T PF05977_consen 302 ALSP-SFWLALIALFLAGAAWIIANS-SLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF 370 (524)
T ss_pred hcch-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2223 334455667788888887776 67889999999999999999999999999999999999999985
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=239.26 Aligned_cols=347 Identities=14% Similarity=0.064 Sum_probs=236.8
Q ss_pred HHHHHHHHHHHhhccc-hhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCc-hHHHHHHHHHHHHHHHH
Q 010733 10 LVNFAAIMERADESML-PGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNR-AHVIALGAFLWAAATFL 87 (502)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~-r~~~~~~~~l~~~~~~~ 87 (502)
-+++.+++.+...... +++.+.+.+++|.+..|+|++.+++.++..++++++|+++||+|+ |+++.++.++.+++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~ 85 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF 85 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3455666666666665 566677888899999999999999999999999999999999965 77889999999899999
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhc--------cCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccC
Q 010733 88 VAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADS--------TDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFM 159 (502)
Q Consensus 88 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 159 (502)
..+.++++.+++.|++.|++.+...+...++...+ .....|.|..| .+|.+++|.+++.+...
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~--- 156 (418)
T TIGR00889 86 AAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE--- 156 (418)
T ss_pred HHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc---
Confidence 99999999999999999998877777666654322 22234555555 46888888888877332
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh
Q 010733 160 GIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF 239 (502)
Q Consensus 160 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (502)
..|+. |++.++..++..++.+.++|+|+.+++ ++ . ... +....+.+.++|+|.++.+.+..++...
T Consensus 157 --~~~~~-f~~~~~~~~~~~~~~~~~~e~~~~~~~--~~------~-~~~--~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 222 (418)
T TIGR00889 157 --LSNIQ-LYITAGSSALLGVFALTLPDIPVAKST--AK------M-SIK--VMLGLDAFILFKNKRMAIFFFFSMLLGA 222 (418)
T ss_pred --chhHH-HHHHHHHHHHHHHHHhcCCCCCCCccc--cc------c-CHH--HHhhhhHHHHhcCCCeeeHHHHHHHHHh
Confidence 34554 556666666655554445554321111 00 0 000 1111123456677776665555544433
Q ss_pred hh-hHHHhHHHHHHHhCCCh--------hHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHH
Q 010733 240 SG-SAFAFAAMWLELIGFSH--------KLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTA 310 (502)
Q Consensus 240 ~~-~~~~~~~~~~~~~g~s~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (502)
.. ....+.|.++++.|.++ ...+...+...+..+++.++.+++.||+++|+ .+... ..+ ..+.
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~-----~l~~~--~~~-~~v~ 294 (418)
T TIGR00889 223 PLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKK-----VMLLS--LVA-WALR 294 (418)
T ss_pred HHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----HHHHH--HHH-HHHH
Confidence 22 33456788888777554 56688899999999999999999999999984 21111 111 1111
Q ss_pred HHHHhhcCCCCc-hHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHH-hhhhhhhchhHHHHHHHHHHH
Q 010733 311 AVLLLVLPDDPS-TAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQ-SFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 311 ~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~~~~i~~~~~g~l~~~~ 388 (502)
. .......... ....+.+..++.|++.+...+ ....++.|.+|++.|++++|+.+ ....+|..++|.+.|.+.|..
T Consensus 295 ~-~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~-~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~ 372 (418)
T TIGR00889 295 F-GFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI-SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKM 372 (418)
T ss_pred H-HHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 1 1111111111 223344556677777776666 56788899999999999999997 567899999999999999986
Q ss_pred h
Q 010733 389 Y 389 (502)
Q Consensus 389 ~ 389 (502)
+
T Consensus 373 g 373 (418)
T TIGR00889 373 F 373 (418)
T ss_pred c
Confidence 4
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-28 Score=219.09 Aligned_cols=357 Identities=15% Similarity=0.123 Sum_probs=276.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHH
Q 010733 3 SETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWA 82 (502)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~ 82 (502)
+.+..+..++..+++.++......+++|.+++.|+++..|.+++..+++.++.+.+++.|++.+|+|+|+.++.++.+++
T Consensus 10 ~~~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~a 89 (422)
T COG0738 10 SVKLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYA 89 (422)
T ss_pred CceeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHH
Confidence 34556777777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccC
Q 010733 83 AATFLVA---FSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFM 159 (502)
Q Consensus 83 ~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 159 (502)
+++.+.. -..+|..++++-++.|.|.+...++...++....++++..+.+++.+..+++|.+++|++++.+..++..
T Consensus 90 vg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~ 169 (422)
T COG0738 90 VGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVA 169 (422)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Confidence 9999985 5568899999999999999999999999999999998899999999999999999999999988762100
Q ss_pred --------------CCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhh
Q 010733 160 --------------GIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIP 225 (502)
Q Consensus 160 --------------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (502)
....|+++|...+...+++.+..... +.|+.+..+.+..+. ++ ....+++++|
T Consensus 170 ~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~-k~p~~~~~~~~~~~~----------~~--~~~~~l~~~~ 236 (422)
T COG0738 170 LTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLS-KLPDLQVAAPSLGAS----------GS--AGLSSLFQNK 236 (422)
T ss_pred hccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc-cCCcCCccccccccc----------cc--chHHHHHhCh
Confidence 01358889998887766666655442 222221111111000 00 0345677888
Q ss_pred HHHHHHHHHHhhhhh-hhHHHhHHHHHHH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHH
Q 010733 226 TFQIIVAQGVFGSFS-GSAFAFAAMWLEL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISA 303 (502)
Q Consensus 226 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 303 (502)
.++...+..+++... ....+|++.|+.+ .|.+..++....+....+.++|++++.++.+|+...| .+...+.
T Consensus 237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k------~Laf~a~ 310 (422)
T COG0738 237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEK------YLAFYAL 310 (422)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH------HHHHHHH
Confidence 888887777777664 3556799999987 8999999999999999999999999999999998774 1111111
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHH
Q 010733 304 ASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGI 383 (502)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~ 383 (502)
.....+....+ .++ ......++..|++.+..+| ...+...+..| ++. ...|..-.+..+|+++.|++.|+
T Consensus 311 ~~ill~~~~~l-----~~g--~v~~~~l~~ig~F~simfP-TIfslal~~l~-~~t-s~~s~~l~maivGGAiiP~l~G~ 380 (422)
T COG0738 311 IAILLLLAVAL-----IGG--VVALYALFLIGLFNSIMFP-TIFSLALKNLG-EHT-SVGSGLLVMAIVGGAIIPPLQGV 380 (422)
T ss_pred HHHHHHHHHHH-----hcC--hHHHHHHHHHHHHhHHHHH-HHHHHHHhccC-ccc-cccceeeeeheecchHHHHHHHH
Confidence 11111111111 122 2234567788999999999 88899999988 433 44455556678899999999999
Q ss_pred HHHHH
Q 010733 384 LAQHV 388 (502)
Q Consensus 384 l~~~~ 388 (502)
+.|..
T Consensus 381 i~d~~ 385 (422)
T COG0738 381 IADMF 385 (422)
T ss_pred HHHhh
Confidence 99995
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-28 Score=216.60 Aligned_cols=346 Identities=17% Similarity=0.181 Sum_probs=268.6
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 010733 11 VNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAF 90 (502)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~ 90 (502)
+.+..+----..+.++|+++++.+|+|.|.+..|+++++..+...+.+++..+++.|+|.++.+..++++.+++.++-..
T Consensus 17 Ivlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~ 96 (395)
T COG2807 17 IVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL 96 (395)
T ss_pred HHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 33333333455677899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHH
Q 010733 91 SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHL 170 (502)
Q Consensus 91 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~ 170 (502)
. +.+.++.+-.+.|.|.+...+..+.+|.+.|| |+-+..+|++....++|..+++.+...+.++. .+||.....
T Consensus 97 ~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~----~gW~~aL~~ 170 (395)
T COG2807 97 G-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS----GGWRGALGF 170 (395)
T ss_pred c-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh----ccHHHHHHH
Confidence 7 78889999999999999999999999999997 67899999999999999999999999999872 489999999
Q ss_pred HHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHH-HHHHHhhhhhhhHHHhHHH
Q 010733 171 VGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQII-VAQGVFGSFSGSAFAFAAM 249 (502)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 249 (502)
-+.++++..++++.....++ ....+.+ ..+...++|+|.-|.+ +...+.+..+|..+.|+|.
T Consensus 171 WAl~allAl~~WlPq~~r~~-~~~~~~~----------------~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ 233 (395)
T COG2807 171 WALLALLALLIWLPQALREQ-AASIATK----------------LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPA 233 (395)
T ss_pred HHHHHHHHHHHHhhhccccc-ccccccc----------------cccccccccCchhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99998888777654321111 1110000 0112345667755554 5555555567888999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHH
Q 010733 250 WLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGL 329 (502)
Q Consensus 250 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (502)
++.+.|+|+.++|.+.+...+..++.++....+.+|...+++ +.......... ..+.+...+.... + .
T Consensus 234 ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~-----~~~~~~~~~l~--G~~G~~~~P~~~~-~--l-- 301 (395)
T COG2807 234 ILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRP-----LVVLALLLMLV--GLVGLLLAPGQLP-I--L-- 301 (395)
T ss_pred HHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch-----HHHHHHHHHHH--HHHHHHHhhhhHH-H--H--
Confidence 999999999999999999999999999999999998655532 22222222222 2222222322221 1 1
Q ss_pred HHHHHHHhhhcCCCCcchhhhhhcc-CCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 330 ALFIMGLCMSWNAPATNNPIFAEIV-PERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 330 ~~~~~g~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
..+++|++.+..++ ...+.+.+.. .++..+.-.|+.+.++++-..+||.++|++.|.++++.
T Consensus 302 w~~llG~G~G~~F~-laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~ 364 (395)
T COG2807 302 WALLLGLGQGGAFP-LALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWS 364 (395)
T ss_pred HHHHHhCccchHHH-HHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChH
Confidence 14678888888887 5555555554 45667788999999999999999999999999987775
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=270.62 Aligned_cols=354 Identities=11% Similarity=0.039 Sum_probs=249.1
Q ss_pred HHHHHHHHHhhccchhhHH-HHhhhccCCC-ccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHH---HHHHHHHHHH
Q 010733 12 NFAAIMERADESMLPGVYK-EVGAALHTDP-TGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIAL---GAFLWAAATF 86 (502)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~-~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~---~~~l~~~~~~ 86 (502)
+++.+.+.+....+..+.. .+..+.+.+. ...++..+++.++++++++++|+++||+|||+++.. ..++..+..+
T Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~ 100 (1140)
T PRK06814 21 FFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAI 100 (1140)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333322 3444444333 347888899999999999999999999999997533 2233333333
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhH
Q 010733 87 LVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRL 166 (502)
Q Consensus 87 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~ 166 (502)
.+...+++++++++|+++|++.++..|+..+++.+++++++|++++++.+++.++|.++||++++++.+. .+|++
T Consensus 101 ~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~-----~~~~~ 175 (1140)
T PRK06814 101 YGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS-----GNFVI 175 (1140)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc-----cccHH
Confidence 3444589999999999999999999999999999999999999999999999999999999999999987 89999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhh-hhHHH
Q 010733 167 AFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFS-GSAFA 245 (502)
Q Consensus 167 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 245 (502)
.|+..++..++..++.+++++.++..... + ..+...++....++.+.+++.++...+..+..... .....
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1140)
T PRK06814 176 LVALLMGIAVLGWLASLFIPKTGNAAPDL-K--------IDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLS 246 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCC-e--------eccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 99555555555544444455443211110 0 00111123334566777888888776665555443 45567
Q ss_pred hHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHh---------
Q 010733 246 FAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLL--------- 315 (502)
Q Consensus 246 ~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 315 (502)
++|.|++ .+|.++.+.+++.+..+++.+++.++.|++.|+..+++.. .... ++..+....+.+.
T Consensus 247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~~~~~~ 320 (1140)
T PRK06814 247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYV----PIGA--LLMGLFGLDLAFASSSVPAEPA 320 (1140)
T ss_pred HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeee----hHHH--HHHHHHHHHHHhcccccccccc
Confidence 8999998 4899999999999999999999999999999877665421 1111 1111111111110
Q ss_pred ------hcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 316 ------VLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 316 ------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
.+....+ .+.+.+..+++|++.+...+ ...+++++..|++.+|+++|+.+++..++..+++.+.|.+.+.
T Consensus 321 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 321 QLKSILVFLSKRH-GWRILIDLFGLAAAGGLYIV-PLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL 396 (1140)
T ss_pred cccchhhhhcccc-cHHHHHHHHHHHHHHHHhHH-HHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000122 23344566777888887777 6789999999999999999999999999999999999998765
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=236.47 Aligned_cols=340 Identities=15% Similarity=0.075 Sum_probs=241.2
Q ss_pred HHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCch----HHHHHHHHHHHHHHHHH
Q 010733 13 FAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRA----HVIALGAFLWAAATFLV 88 (502)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r----~~~~~~~~l~~~~~~~~ 88 (502)
..++..........+.+|.+.+++|.|..++|++.+++.++..++++++|++.||+||| +.+.+...+. .....
T Consensus 11 ~~~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~ 88 (382)
T PRK11128 11 LSYFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFW 88 (382)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHH
Confidence 33555666678888899999999999999999999999999999999999999999994 3333332222 22334
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHH
Q 010733 89 AFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAF 168 (502)
Q Consensus 89 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f 168 (502)
..++++|.+++.|++.|++.+...|...+++.++ +++|+++.+......++|.++||++++++.++ +|||..|
T Consensus 89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~-----~g~~~~f 161 (382)
T PRK11128 89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW-----FGEQAIL 161 (382)
T ss_pred HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH-----cChhHHH
Confidence 4568899999999999999998999988888876 45688899999999999999999999999998 8999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHHhH
Q 010733 169 HLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFAFA 247 (502)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 247 (502)
++.++..++..+...+.++ +++..++ ++ + .+ +..+++++++|+|.++......+.... ......+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~-~-~~-------~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~ 228 (382)
T PRK11128 162 WILTAGVASMLLGQLLRPT-IMPQGES---RQ-Q-ES-------AGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFS 228 (382)
T ss_pred HHHHHHHHHHHHHHHccCC-CCCcccc---cc-c-cc-------cccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHH
Confidence 9887655544433332322 2111100 00 0 00 011234567788888766554444333 33455678
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHH
Q 010733 248 AMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLH 327 (502)
Q Consensus 248 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (502)
|.|+++.|.++.+.+.+.+...++.++..++.+++.||+++|+ .+.. .. ....+. .... ...++ .+.+
T Consensus 229 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~-----~l~~--~~-~~~~~~-~~~~--~~~~~-~~~~ 296 (382)
T PRK11128 229 AIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD-----LLLL--SA-ICGVVR-WGLM--GSTTA-LPWL 296 (382)
T ss_pred HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----HHHH--HH-HHHHHH-HHHH--Hhhhh-HHHH
Confidence 8888889999999999999888999999999999999999884 2111 11 111111 1111 11222 3334
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhh-hhhhhchhHHHHHHHHHHH
Q 010733 328 GLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSF-ESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 328 ~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~~~~i~~~~~g~l~~~~ 388 (502)
.+..++.|++.+...+ ....+..+. +++++++..++.+.. ..+|..++|.+.|.+.|..
T Consensus 297 ~~~~~l~g~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~ 356 (382)
T PRK11128 297 IVIQILHCGTFTVCHL-AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL 356 (382)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677887776666 566777776 556678889988744 4667789999999999985
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=234.77 Aligned_cols=324 Identities=15% Similarity=0.142 Sum_probs=232.3
Q ss_pred ccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhcc-----CchHH-HHHHHHHHHHHHHHHHhh---hh
Q 010733 23 SMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHH-----NRAHV-IALGAFLWAAATFLVAFS---ST 93 (502)
Q Consensus 23 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-----G~r~~-~~~~~~l~~~~~~~~~~~---~~ 93 (502)
...++.+|.+.+|+|+|.+++|++.+. .+...+ .+++|+++||+ ||||. ++.+.++.++...+.++. .+
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 456678899999999999999999766 555555 89999999998 89997 567888888887778777 46
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcc--------hh
Q 010733 94 FFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG--------WR 165 (502)
Q Consensus 94 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~--------w~ 165 (502)
.+.+....++.+++.+...++..+++.|++|+|+|+++.++...+..+|.++++.+++.+.+. .+ ||
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-----~g~~~~~~~~wr 157 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP-----EFANTGLITLWG 157 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh-----cccccccccccH
Confidence 677888888899999999999999999999999999999999999999999999999988876 55 99
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhH---HHHHHHHHH-hhhhhh
Q 010733 166 LAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPT---FQIIVAQGV-FGSFSG 241 (502)
Q Consensus 166 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~ 241 (502)
..|++.++..++..++.++..+|++..+.+ +++.+ ++.....+.+++++. ++......+ .....+
T Consensus 158 ~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (356)
T TIGR00901 158 YIFFWTALLILPGLLVTLFLAKEPQEDASV--------PKPLT---QAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDS 226 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccccc--------chhHH---HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 999999888777665555544443221100 00011 112233445556553 444433333 333344
Q ss_pred hHHHhHHHHHHHhCCChhHHHHHHHHHH-HHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010733 242 SAFAFAAMWLELIGFSHKLTAFLMTLFV-IAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDD 320 (502)
Q Consensus 242 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (502)
....+.|.|++++|+++.+.+......+ ++.+++.++++++.||+++|+ .... .............+......
T Consensus 227 ~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~-----~l~~-~~~~~~~~~~~~~~~~~~~~ 300 (356)
T TIGR00901 227 AATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY-----ALLL-FGIVQALTNAGFVWLASNGH 300 (356)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH-----HHHH-HHHHHHHHHHHHHHHHhcCc
Confidence 5667899999889999999998887766 577899999999999999884 1111 11111111111111111110
Q ss_pred -----CchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhh
Q 010733 321 -----PSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFES 371 (502)
Q Consensus 321 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 371 (502)
.+..+....+.++.+++.+...+ ...++.+|.+|+++||+.+|+.+...+
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 301 HDGITFPHLLMLFLTITLEAVTGGLGTV-AFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred ccccccchHHHHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 02233344556666787777777 789999999999999999999887654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-27 Score=230.94 Aligned_cols=349 Identities=14% Similarity=0.095 Sum_probs=238.2
Q ss_pred HHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhcc-----CchH-HHHHHHHHHHHHH
Q 010733 12 NFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHH-----NRAH-VIALGAFLWAAAT 85 (502)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-----G~r~-~~~~~~~l~~~~~ 85 (502)
...++..+.........+|.+.++.|.|.+++|++..+... .+..+++|+++||+ |||| .+.++.++.+++.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 44466677777778888999999999999999999777665 58999999999999 8876 7888899998888
Q ss_pred HHHHhh---hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCc
Q 010733 86 FLVAFS---STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIP 162 (502)
Q Consensus 86 ~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~ 162 (502)
.+.++. ++++.+++..++.++..+...++..+++.|++|+++|+++.++...+.++|.++++.++..+.+. ..
T Consensus 83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~----~~ 158 (402)
T PRK11902 83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR----VL 158 (402)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc----cc
Confidence 888887 36788888888889989999999999999999999999999999999999999999999988874 14
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhh-h
Q 010733 163 GWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFS-G 241 (502)
Q Consensus 163 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 241 (502)
|||..|++.++..++..+..+..+|+++. ++++ + +.. ++..++.++++++|.++..+...++.... .
T Consensus 159 gw~~~f~i~a~~~l~~~l~~~~~~e~~~~-~~~~---~-----~~~---~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~ 226 (402)
T PRK11902 159 GWGNTYLLMAGLMLAGALTTLWAPEPEVP-ARPP---R-----SLG---EAVVGPLRDFFSRRGAWALLLLIVLYKLGDA 226 (402)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCccc-cccc---c-----hhH---HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHH
Confidence 99999999988877665544444433221 1100 0 000 12334556778888877655544433332 2
Q ss_pred hHHHhHHHHH-HHhCCChhHHHHHHHHHH-HHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCC
Q 010733 242 SAFAFAAMWL-ELIGFSHKLTAFLMTLFV-IAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPD 319 (502)
Q Consensus 242 ~~~~~~~~~~-~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (502)
....+.+.++ +++|+++.+.+++....+ ++.+++.++++++.||+++|+ ...... ....+............
T Consensus 227 ~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~-----~l~~~~-~~~~l~~l~~~~~~~~~ 300 (402)
T PRK11902 227 FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR-----SLMLFG-VLQAVSNLGYWVLAVTP 300 (402)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHH-HHHHHHHHHHHHHHhcC
Confidence 2223333344 468999999999886655 468899999999999999884 221111 11111111111111211
Q ss_pred CCchHHHHHHHH----HHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 320 DPSTAFLHGLAL----FIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 320 ~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
++.+ .+.... +..|++.+.... ....++++..| ++..++.+....+++.+++++.|.+.|.. |+.
T Consensus 301 -~~~~-~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~G~l~~~~-G~~ 369 (402)
T PRK11902 301 -KHLW-TMALAIGIENLCGGMGTAAFVA-LLMALCNRSFS----ATQYALLSALASVGRVYVGPTSGYLVEAY-GWP 369 (402)
T ss_pred -CcHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChH
Confidence 2222 222222 233444444343 44555555555 44566666677778877788999999985 543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-28 Score=238.02 Aligned_cols=358 Identities=13% Similarity=0.071 Sum_probs=228.1
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHH-HhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAA 84 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~ 84 (502)
+..+.+.+.+++..+..+...+.+|. +.+++|+|+.+.|++.+++.++..++++++|+++||+|||+++.++..+.+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVL 89 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 34455556666666666665666554 55669999999999999999999999999999999999999998877666655
Q ss_pred HHHHHh---hh-----hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 85 TFLVAF---SS-----TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 85 ~~~~~~---~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
...... ++ .+...++.+++.|.+.....+....+..+ . .+++++.++......++|..++|++++.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~- 166 (420)
T PRK09528 90 FGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN- 166 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-
Confidence 432211 11 11112233344443333333333333322 2 3457788899999999999999999998876
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHh
Q 010733 157 SFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVF 236 (502)
Q Consensus 157 ~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (502)
.+|+++|++.++..++..++.++..++++.+...+++++. ++. +...++.+..+++|.++...+..+.
T Consensus 167 -----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~l~~~~~~~l~l~~~~ 234 (420)
T PRK09528 167 -----INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGA---NAS----AVSLKDALALLKLPKFWFLVLYVIG 234 (420)
T ss_pred -----cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhc---ccc----cccHHHHHHHccCCCeEeehHHHHH
Confidence 5899999998888877776666554443322111110000 001 1122334556677776554443333
Q ss_pred hhhhh-hHHHhHHHHHHH----hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHH
Q 010733 237 GSFSG-SAFAFAAMWLEL----IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAA 311 (502)
Q Consensus 237 ~~~~~-~~~~~~~~~~~~----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (502)
....+ ....+.|.|+.+ .+.+..+.+.+.+...++..++.++.|++.||+++|+.. .. . .+...+ .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-----~~-~--~~l~~~-~ 305 (420)
T PRK09528 235 VACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNAL-----LL-A--GTIMAV-R 305 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh-----HH-H--HHHHHH-H
Confidence 32222 233356666653 356667788999989999999999999999999998521 11 1 111111 1
Q ss_pred HHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhH-HHhhhhhhhchhHHHHHHHHHHHhc
Q 010733 312 VLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYAL-DQSFESIPSSFAPAVVGILAQHVYG 390 (502)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~~~~i~~~~~g~l~~~~~~ 390 (502)
..+..+ .++.+ .+....++.+++.+...+ ....+..+..|++.+++..+. .++...+|++++|.+.|++.|.. |
T Consensus 306 ~~l~~~--~~~~~-~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-G 380 (420)
T PRK09528 306 IIGSGF--ATGPL-EVSILKLLHAFEVPFLLV-GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI-G 380 (420)
T ss_pred HHHHHh--cccHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-C
Confidence 111112 12223 233445556666655444 456788888999999888766 67778899999999999999984 5
Q ss_pred CC
Q 010733 391 YK 392 (502)
Q Consensus 391 ~~ 392 (502)
+.
T Consensus 381 ~~ 382 (420)
T PRK09528 381 FQ 382 (420)
T ss_pred ch
Confidence 54
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=229.76 Aligned_cols=375 Identities=11% Similarity=0.062 Sum_probs=247.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccchh-hHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhc-cCchHHHHHHHHH
Q 010733 3 SETLTLVLVNFAAIMERADESMLPG-VYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAH-HNRAHVIALGAFL 80 (502)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~G~r~~~~~~~~l 80 (502)
++++.++.+++..+.+.+..+.... +..++.+++|.+.++.+++.+.+.....+..+++|+++|| +||||+++++.++
T Consensus 11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~ 90 (489)
T PRK10207 11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIV 90 (489)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHH
Confidence 4567777788888888777766554 4556788899999999999999998888889999999999 9999999999999
Q ss_pred HHHHHHHHHhhhhHHH-HHHHHHHHHhhhhhhhhHHHHHHhhccCcc--cchhHHHHHHHHHhhhHhHHHHHHHHHHhhc
Q 010733 81 WAAATFLVAFSSTFFQ-VAVSRGLNGIGLAIVIPAIQSLVADSTDET--NRGMAFGWLQLTGYLGSVLGGFCSVLIASTS 157 (502)
Q Consensus 81 ~~~~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~ 157 (502)
+++++++++++.+... ++++|+++|+|.|...|...+++.|++|++ +|.++++++..+.++|..+||.+++++.++
T Consensus 91 ~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~- 169 (489)
T PRK10207 91 LAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK- 169 (489)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 9999999999876554 558999999999999999999999999877 457899999999999999999999999998
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHh-hccCCcccccCCCccCCCCCCc------------------chhhhHH-----
Q 010733 158 FMGIPGWRLAFHLVGLISVIVGVLVHV-YANDPRCLAKDGTKIDHKPRRP------------------FWADIKD----- 213 (502)
Q Consensus 158 ~~~~~~w~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~----- 213 (502)
.|||+.|++.++ +++..++.+. ..+..+....+.+++..+.... .......
T Consensus 170 ----~gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (489)
T PRK10207 170 ----FGYSVTYNLCGA-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIV 244 (489)
T ss_pred ----hChHHHHHHHHH-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 899999999655 3444443333 2211111000000000000000 0000000
Q ss_pred -----------HHHHhhhhhhhhHHHHHHHH--HHhhhhhhhHH-HhHHHHHHH-hCCCh----hHHHHHHHHHHHHHhh
Q 010733 214 -----------LITDAKMVIKIPTFQIIVAQ--GVFGSFSGSAF-AFAAMWLEL-IGFSH----KLTAFLMTLFVIAFCL 274 (502)
Q Consensus 214 -----------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~-~g~s~----~~~~~~~~~~~~~~~~ 274 (502)
..+..++.+|+|.+....+. ....+..+... +.++.+.++ .+.+. .....+.+...+..++
T Consensus 245 ~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii 324 (489)
T PRK10207 245 LSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVV 324 (489)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHH
Confidence 00111234566655543322 22233333332 456667663 22211 1223444555566777
Q ss_pred hhhhhHhHhhhhhhcCCCchhHHHHHHHHHH-HHHHHHHH---Hhhc-CCCCchHHHHHHHHHHHHHhhhcCCCCcchhh
Q 010733 275 GGLFGGKMGDILAQRLPDSGRVILSQISAAS-VIPTAAVL---LLVL-PDDPSTAFLHGLALFIMGLCMSWNAPATNNPI 349 (502)
Q Consensus 275 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 349 (502)
..++.+++.||+++|+...........+..+ ++...... .... .....+.+......++.|++.+...+ ...++
T Consensus 325 ~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~-~g~~~ 403 (489)
T PRK10207 325 ASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISA-LGLAM 403 (489)
T ss_pred HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhH-HHHHH
Confidence 7888899999999885311111111111111 11111110 1111 11122334455778888999999888 88899
Q ss_pred hhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHH
Q 010733 350 FAEIVPERCRTSIYALDQSFESIPSSFAPAVVGIL 384 (502)
Q Consensus 350 ~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l 384 (502)
+.+..|++.+|.++|+.+...++|+.++..+....
T Consensus 404 ~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 404 IAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999888887776644
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-27 Score=258.77 Aligned_cols=359 Identities=14% Similarity=0.112 Sum_probs=249.2
Q ss_pred HHHHHHHHHHHH-HhhccchhhHHHHhhhccCCCc--cchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHH
Q 010733 8 LVLVNFAAIMER-ADESMLPGVYKEVGAALHTDPT--GLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAA 84 (502)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~s~~--~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~ 84 (502)
+...+++.++.. .+......+.+.+..+++.+.+ ..+++.+++.+++.++++++|+++||+|||++++++.++.+++
T Consensus 11 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~ 90 (1146)
T PRK08633 11 FLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGL 90 (1146)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHH
Confidence 334444555433 3444455556667777776544 4699999999999999999999999999999999988776665
Q ss_pred HHHHH---hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhc----
Q 010733 85 TFLVA---FSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTS---- 157 (502)
Q Consensus 85 ~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~---- 157 (502)
.++.. .+++++.++++|+++|++.+...++..+++.|++|+++|++++++...+..+|.++|+++++++.+..
T Consensus 91 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~ 170 (1146)
T PRK08633 91 TLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNT 170 (1146)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 55443 45789999999999999999999999999999999999999999999999999999999999987630
Q ss_pred cCCCcchhHHHHHHHHHHHHHHH-HHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHh
Q 010733 158 FMGIPGWRLAFHLVGLISVIVGV-LVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVF 236 (502)
Q Consensus 158 ~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (502)
..+..+|++.+.+..+...+..+ +.+.+++.++....+. + +..+...+.....++.+++++.++..++..++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (1146)
T PRK08633 171 PSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF----D---KKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSY 243 (1146)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc----c---ccccccHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 00012455555444443333333 3333554433222111 0 00111113334455667777877765554444
Q ss_pred hhh-hhhHHHhHHHHHH-HhCCChh-HHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 010733 237 GSF-SGSAFAFAAMWLE-LIGFSHK-LTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVL 313 (502)
Q Consensus 237 ~~~-~~~~~~~~~~~~~-~~g~s~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
... .+....++|.|++ .+|++.. +.+++.+...++.+++.++.+++.||+++++.. .. .. +...+..+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~-----~~-~~--~~~~~~~~~ 315 (1146)
T PRK08633 244 FWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLV-----PL-GA--LGLALSLFL 315 (1146)
T ss_pred HHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccch-----hH-HH--HHHHHHHHH
Confidence 333 3445567888887 6899998 999999999999999999999999999877421 11 11 111111111
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHH
Q 010733 314 LLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQ 386 (502)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~ 386 (502)
+ ... . ..+...+..++.|++.+...+ ...+++.+..|++.||+++|+.+++..++..+++.+.+.+..
T Consensus 316 ~-~~~--~-~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 316 L-PTA--P-SLASVLVLFFLFGFSAGLFIV-PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred H-HHh--h-hHHHHHHHHHHHHHHHHHhhH-HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 1 233344566777888877776 678899999999999999999999999998888777666544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=229.39 Aligned_cols=377 Identities=11% Similarity=0.075 Sum_probs=251.2
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHH-hhh--ccCCCccchHHHHHHHHHHHHhhhhhhHhhhc-cCchHHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEV-GAA--LHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAH-HNRAHVIALGAF 79 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~--~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~G~r~~~~~~~~ 79 (502)
+.+.+..+.+..+.+.+..+...+.+|.+ .++ +|.+..+.|++.+.+.+++.++.+++|+++|| +|||+++.++.+
T Consensus 8 ~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~ 87 (475)
T TIGR00924 8 HPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGI 87 (475)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHH
Confidence 34556777778888888877777777765 445 89999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCccc---chhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 80 LWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETN---RGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 80 l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
+.+++.++.+++++++.+++.|++.|+|.|...+...+++++++|+++ |++++++.+.+.++|.++||++++++.++
T Consensus 88 ~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~ 167 (475)
T TIGR00924 88 VLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN 167 (475)
T ss_pred HHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998754 88899999999999999999999999987
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhH----------------------H-
Q 010733 157 SFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIK----------------------D- 213 (502)
Q Consensus 157 ~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~- 213 (502)
.+||+.|++.++..++..+......+..+..+.++++.+++ +++...... +
T Consensus 168 -----~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (475)
T TIGR00924 168 -----YGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQ-GKTYGKLLLALLAALALVFFCAWLMHHVVIANI 241 (475)
T ss_pred -----cChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchh-hhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 89999999987655544433333332211111000000000 000000000 0
Q ss_pred ----------------HHH-Hhhhhhhhh--HHHHHHHHHHhhhhhhhH-HHhHHHHHHH-hCCCh----hHHHHHHHHH
Q 010733 214 ----------------LIT-DAKMVIKIP--TFQIIVAQGVFGSFSGSA-FAFAAMWLEL-IGFSH----KLTAFLMTLF 268 (502)
Q Consensus 214 ----------------~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~g~s~----~~~~~~~~~~ 268 (502)
..+ .....-+++ .+..+.+.....+..+.. .+.++.+.++ .+.+. ...+++.+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n 321 (475)
T TIGR00924 242 LLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLN 321 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhh
Confidence 000 000011111 222223333333333322 2345666553 33221 1266788888
Q ss_pred HHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHH-HHHHHHHHHHHh-hcCC--CCchHHHHHHHHHHHHHhhhcCCCC
Q 010733 269 VIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISA-ASVIPTAAVLLL-VLPD--DPSTAFLHGLALFIMGLCMSWNAPA 344 (502)
Q Consensus 269 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (502)
.+..++..++..++..|..||............+. ..++......+. .... ...+.+..+...++.+++.....|
T Consensus 322 ~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p- 400 (475)
T TIGR00924 322 PFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISP- 400 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhH-
Confidence 88888887776666666666421111111111111 111111111110 0111 123445566788889999999998
Q ss_pred cchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 345 TNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 345 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
...++..+..|++.||+.+|+......+|..+++.+.....+.
T Consensus 401 ~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~ 443 (475)
T TIGR00924 401 LGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP 443 (475)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999988888888888877765543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=218.89 Aligned_cols=338 Identities=11% Similarity=0.053 Sum_probs=231.5
Q ss_pred hhccchhhHHHHhhhccCCCcc-chHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010733 21 DESMLPGVYKEVGAALHTDPTG-LGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAV 99 (502)
Q Consensus 21 ~~~~~~~~~~~i~~~~~~s~~~-~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 99 (502)
-+...+.+.|.+.+++|+|.+| .|.+.++++.+|+++.+++|+++||+|.|+++.++.+.+++.+++.++++++..+.+
T Consensus 41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i 120 (511)
T TIGR00806 41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL 120 (511)
T ss_pred hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888899999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHH---HHHHH
Q 010733 100 SRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLV---GLISV 176 (502)
Q Consensus 100 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~---~~~~~ 176 (502)
.|++.|+++|... +...++.+|+|+++|+++.++..++..+|.++++++++++ .. +|||+.+.+. .....
T Consensus 121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s-----~gWr~y~~Ln~Isl~s~~ 193 (511)
T TIGR00806 121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VT-----LGWISYSTLNIISLVFMT 193 (511)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-----cCchhHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999999999999999994 44 7899765443 22233
Q ss_pred HHHHHHHhhccCCcc---cccCC-------C-ccC-CCCC--Cc------chhhhHHHHHHhhhhhhhhHHHHHHHHHHh
Q 010733 177 IVGVLVHVYANDPRC---LAKDG-------T-KID-HKPR--RP------FWADIKDLITDAKMVIKIPTFQIIVAQGVF 236 (502)
Q Consensus 177 ~~~~~~~~~~~~~~~---~~~~~-------~-~~~-~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (502)
+..++.+++|..++. ++.+. + ++. .++. .. .....+..+.+.+.-.+++.+....+-..+
T Consensus 194 ~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~ 273 (511)
T TIGR00806 194 FSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVF 273 (511)
T ss_pred HHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHH
Confidence 344445556633321 01100 0 000 0000 00 011234566677777777776655555444
Q ss_pred hhhh-hhHHHhHHHHHHHhCC-ChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 010733 237 GSFS-GSAFAFAAMWLELIGF-SHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLL 314 (502)
Q Consensus 237 ~~~~-~~~~~~~~~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (502)
..+. +-+.+|....-++..- .+...|..-++..+.+.+..+..|++-.+..+. -...+.++..+. ..++
T Consensus 274 a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~-------~~l~l~v~s~~~--~gll 344 (511)
T TIGR00806 274 NSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW-------SKLLIAVVSAIQ--AGLV 344 (511)
T ss_pred HhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh-------HHHHHHHHHHHH--HHHh
Confidence 4443 3445566655554322 222567777778888888888888875443221 111122222222 2222
Q ss_pred hhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhch
Q 010733 315 LVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSF 376 (502)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i 376 (502)
+.....++ .+...+..++++....+..+ +...-+++....+.-|-.+|+.+++.-+-..+
T Consensus 345 ~~m~~t~~-Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQti 404 (511)
T TIGR00806 345 FWMSQSHD-IWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVATALKTI 404 (511)
T ss_pred hhhhcccc-hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHHHh
Confidence 22333333 34444566666666666655 45555666666677788888887666544433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=222.67 Aligned_cols=324 Identities=18% Similarity=0.202 Sum_probs=240.0
Q ss_pred cCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHH
Q 010733 37 HTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQ 116 (502)
Q Consensus 37 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 116 (502)
+-+.+++|++.+.+.+.+.+.+++.|.+.||+|+|..+++|+++..+.+++.++.++++.++++|.+||+|.++..++..
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgl 181 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGL 181 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCcc-cchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccC
Q 010733 117 SLVADSTDET-NRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKD 195 (502)
Q Consensus 117 ~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (502)
++++|.||++ +|++++|+...+.++|..+||++||.+++. .|.+.+|++++++.++-..+.++..+..+..++.
T Consensus 182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~-----~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~ 256 (464)
T KOG3764|consen 182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF-----AGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDS 256 (464)
T ss_pred HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh-----cCCcCcHHHHHHHHHHHHHHHHheeCccccCccc
Confidence 9999999876 489999999999999999999999999998 9999999999999999988888866543332211
Q ss_pred CCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhHH-HhHHHHHH-HhCCChhHHHHHHHHHHHHHh
Q 010733 196 GTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAF-AFAAMWLE-LIGFSHKLTAFLMTLFVIAFC 273 (502)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ 273 (502)
.++ -.++++++++|..+.............++. .-++.++. ++..+..+.|+.+....+...
T Consensus 257 ~~~----------------~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ 320 (464)
T KOG3764|consen 257 TEQ----------------GTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYA 320 (464)
T ss_pred ccc----------------CccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchh
Confidence 100 023456677777766555444444333333 35667665 566555588999999999999
Q ss_pred hhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCC--Ccchhhhh
Q 010733 274 LGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAP--ATNNPIFA 351 (502)
Q Consensus 274 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~ 351 (502)
++..+.|.+.||+++.+ +..... .+..........+..+.. .-+++..+..+++.+..-. .....+..
T Consensus 321 ig~~lfg~la~k~~~~~-----wl~~~~----gl~~~G~~~~~iP~~~~~-~~L~vp~~~l~~~i~~~dasl~P~l~~lv 390 (464)
T KOG3764|consen 321 IGTNLFGKLADKYPHLR-----WLLSLG----GLATVGVSSGPIPFATSI-AQLWVPNFGLGFGIGLADASLIPTLGYLV 390 (464)
T ss_pred ccCchHHHHHHhcCchh-----HHHHHH----HHHHHHHHhchhHhhhhH-HHHhhhhHHHHHHHHHHHHHHhhhhHHhc
Confidence 99999999999999552 222222 222222222222222221 1122223333333322221 01333444
Q ss_pred hccCCC---CchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 352 EIVPER---CRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 352 ~~~p~~---~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
|....+ ..|.+.++......++.++||.++|.+.+.. |+.
T Consensus 391 d~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~i-GF~ 433 (464)
T KOG3764|consen 391 DPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAI-GFE 433 (464)
T ss_pred chhhccccceeeeHHHHHHHHHHHhhhccccccchheeeh-hHH
Confidence 443334 6688999999999999999999999999984 654
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=224.64 Aligned_cols=356 Identities=11% Similarity=0.035 Sum_probs=238.5
Q ss_pred HHHHHHHHHHHHHhhccchhhHHH-HhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATF 86 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~ 86 (502)
++.+...+++.+.......+.+|. +.+++|.++.+.|++.+++.+++.+++++.|+++||+|||+.++.+....+++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~ 83 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA 83 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 445556667777777777777765 4567999999999999999999999999999999999999999887776665444
Q ss_pred HHH---hh-----hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhcc
Q 010733 87 LVA---FS-----STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSF 158 (502)
Q Consensus 87 ~~~---~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~ 158 (502)
... +. +.+..+++.|++.|++.+...+....+..+.. +++++..+......++|.++||++++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~--- 158 (396)
T TIGR00882 84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS--- 158 (396)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc---
Confidence 321 12 12344567788999988888888887776643 334567788888899999999999998765
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhh
Q 010733 159 MGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGS 238 (502)
Q Consensus 159 ~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (502)
.+||.+|++.+++.++..++.+...++++.++.+++..+.+.+++ ..++.++++++|.++......+...
T Consensus 159 ---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~l~~~~~~ 228 (396)
T TIGR00882 159 ---IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASAF-------SLKLALELFRQRKFWMFVLYVVGVA 228 (396)
T ss_pred ---cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCC-------CHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 699999999988888777666554444322111111000000111 1123456677777665544443333
Q ss_pred hhh-hHHHhHHHHHHHh----CCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 010733 239 FSG-SAFAFAAMWLELI----GFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVL 313 (502)
Q Consensus 239 ~~~-~~~~~~~~~~~~~----g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
..+ ....+.+.|+++. +.+....+...+...+...++.+..+++.||+++|+. ... .... ..+...
T Consensus 229 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~-----l~~-~~~l--~~l~~~- 299 (396)
T TIGR00882 229 CVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNA-----LLI-AGTI--MSVRII- 299 (396)
T ss_pred HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-----HHH-HHHH--HHHHHH-
Confidence 333 3334677777643 4566677888888888999999999999999999852 111 1111 111111
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhH-HHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 314 LLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYAL-DQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
.... .++.+. +....++.|++...... ....+..+..|++.++++.+. .+....+|+.+++.+.|++.|.. |+.
T Consensus 300 ~~~~--~~~~~~-~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~-G~~ 374 (396)
T TIGR00882 300 GSSF--ATTALE-VVILKMLHAFEVPFLLV-GCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI-GFQ 374 (396)
T ss_pred HHHh--cCChHH-HHHHHHHHHHHHHHHHH-HHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-ccH
Confidence 1111 222232 33445556666544433 345566777788888887766 67888999999999999999984 553
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=229.75 Aligned_cols=341 Identities=14% Similarity=0.185 Sum_probs=239.6
Q ss_pred hhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhc----cCchH-HHHHHHHHHHHHHHHHHhhhh------HH
Q 010733 27 GVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAH----HNRAH-VIALGAFLWAAATFLVAFSST------FF 95 (502)
Q Consensus 27 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~G~r~-~~~~~~~l~~~~~~~~~~~~~------~~ 95 (502)
.+.+.+.+++|+++.++|++.++..+..++..|+.|+++|| +|||| .++.+....+++.+++.+.++ ..
T Consensus 21 ~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~ 100 (437)
T TIGR00792 21 YLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLV 100 (437)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHH
Confidence 45667888899999999999999999999999999999998 67755 677888888888888877653 45
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhcc-CcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhcc--CCCcchhHHHHHHH
Q 010733 96 QVAVSRGLNGIGLAIVIPAIQSLVADST-DETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSF--MGIPGWRLAFHLVG 172 (502)
Q Consensus 96 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~--~~~~~w~~~f~~~~ 172 (502)
.+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.+.+..... ....+||+.+.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~ 180 (437)
T TIGR00792 101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLA 180 (437)
T ss_pred HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence 6777889999998888888889999987 46889999999999999998888877766654210 12368999999999
Q ss_pred HHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhHH-HhHHHHH
Q 010733 173 LISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAF-AFAAMWL 251 (502)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 251 (502)
++.++..++.++..+|++....+ +++ ++. +..+..+.++++|.++......++....+... .+.+.|.
T Consensus 181 ~l~~~~~~~~~~~~~e~~~~~~~----~~~-~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (437)
T TIGR00792 181 LIGVVSLIICFFGTKERYSEIPK----NIE-KKL------SLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYF 249 (437)
T ss_pred HHHHHHHHHHHcCCEecCCCCCc----ccc-cCC------CHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeE
Confidence 98888777766544433211000 000 000 12234456778888877666555544433332 3455555
Q ss_pred HH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 010733 252 EL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLA 330 (502)
Q Consensus 252 ~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (502)
+. .+ ++.+.+.+.....++.+++.++.+++.||+++|+ ...... .+.. +..+.+. ... + ..+...+.
T Consensus 250 ~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~-----~~~~~~--~~~~-~~~~~~~-~~~-~-~~~~~~~~ 317 (437)
T TIGR00792 250 TYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI-----LFAGGI--LLMV-LGYLIFF-FAG-S-NLPLILVL 317 (437)
T ss_pred eeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----HHHHHH--HHHH-HHHHHHH-Hcc-h-hHHHHHHH
Confidence 53 44 4566677777788999999999999999999884 222211 1111 1111111 111 2 22333445
Q ss_pred HHHHHHhhhcCCCCcchhhhhhccC-------CCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 331 LFIMGLCMSWNAPATNNPIFAEIVP-------ERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 331 ~~~~g~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
.++.|++.+...+ ..+++..|..+ ++.+|.+.|+.+.+..++..+++.+.|.+.+. .||.
T Consensus 318 ~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~-~G~~ 384 (437)
T TIGR00792 318 IILAGFGQNFVTG-LVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI-IGYV 384 (437)
T ss_pred HHHHHHHHHHHHH-HHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 5666777766665 66778777754 56679999999999999999999999999998 4664
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-26 Score=229.89 Aligned_cols=400 Identities=16% Similarity=0.207 Sum_probs=266.8
Q ss_pred HHHHHHHHHHHh--hccchhhHHHHhhhccC---CC----ccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHH
Q 010733 10 LVNFAAIMERAD--ESMLPGVYKEVGAALHT---DP----TGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFL 80 (502)
Q Consensus 10 ~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~---s~----~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l 80 (502)
...+..+..+++ ....+++...+.++... .. ++.+|+.+...++..++++++|+++|++|||+.++++.++
T Consensus 49 ~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~ 128 (513)
T KOG0254|consen 49 VAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVL 128 (513)
T ss_pred HHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334444555554 45566666666664321 22 2448999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCC
Q 010733 81 WAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMG 160 (502)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~ 160 (502)
+.++.+++++++|+++++++|+++|+|.|+.......+++|..|++.||...+..+....+|..++..++....+. .
T Consensus 129 ~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~---~ 205 (513)
T KOG0254|consen 129 FLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV---Y 205 (513)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC---C
Confidence 9999999999999999999999999999999999999999999999999999999999999999995555444331 1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCC-------C--CCcchhh---hH-HHHH---------Hh
Q 010733 161 IPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHK-------P--RRPFWAD---IK-DLIT---------DA 218 (502)
Q Consensus 161 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~---~~-~~~~---------~~ 218 (502)
.+||..+.+..+++++..+..++.||+|++..++++.++.+ . +.+...+ .+ .... .+
T Consensus 206 -~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (513)
T KOG0254|consen 206 -AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASW 284 (513)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccH
Confidence 48999999999999998888777899998876644432211 0 0000000 01 0000 01
Q ss_pred hhh----hhhhHHHHHHHHHHhhhhh-hhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCc
Q 010733 219 KMV----IKIPTFQIIVAQGVFGSFS-GSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDS 293 (502)
Q Consensus 219 ~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 293 (502)
+.+ .+++......+..+..... .....|.+.+++..|.+... .......++..+++..++.++.||+|||+.
T Consensus 285 ~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l-- 361 (513)
T KOG0254|consen 285 GELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKL-- 361 (513)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHH--
Confidence 111 2233333334444444332 34456788888887776543 455666777888888888999999999951
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCC-----C-chHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHH
Q 010733 294 GRVILSQISAASVIPTAAVLLLVLPDD-----P-STAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQ 367 (502)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 367 (502)
++........+..+........... . ....+...+++...+..+... ..+.+..|.+|.+.|+++.++..
T Consensus 362 --ll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~--v~w~~~sEifp~~~r~~~~s~~~ 437 (513)
T KOG0254|consen 362 --LLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGP--VPWVIVSEIFPLRLRSKGASLAV 437 (513)
T ss_pred --HHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhccccc--chhhhhhccCcHhHHhhhHHHHH
Confidence 2222222222222222222221111 1 122222333333333433333 57789999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHhcCCCCCCCCCCcchhhhhhhchHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccCcccc
Q 010733 368 SFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAIYAAMSIPMAICCIIYS-FLYCSYPNDRGQ 446 (502)
Q Consensus 368 ~~~~~~~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 446 (502)
..+++.+.+.......+.+... .. ..+..+..++.+... +.+...||+|.+
T Consensus 438 ~~n~~~~~~v~~~~~~~~~~~~-~~---------------------------~~f~~f~~~~~~~~~~fv~~~~pETkg~ 489 (513)
T KOG0254|consen 438 AVNWLWNFLISFFFPFITEALG-IG---------------------------GTFGYFGGICLLSLIIFVFFFVPETKGL 489 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-cc---------------------------chHHHHHHHHHHHHHHHheEEcccCCCC
Confidence 9999888777666655555532 00 122333444444454 677788999887
Q ss_pred cc
Q 010733 447 AT 448 (502)
Q Consensus 447 ~~ 448 (502)
..
T Consensus 490 sl 491 (513)
T KOG0254|consen 490 TL 491 (513)
T ss_pred cH
Confidence 64
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-27 Score=207.25 Aligned_cols=358 Identities=13% Similarity=0.070 Sum_probs=253.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHH
Q 010733 3 SETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWA 82 (502)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~ 82 (502)
-+|........+.+.+.+.....+.+.|...+.+|.+.-|..++......+..+++..+|.++|++|||+.+.+..+...
T Consensus 75 fq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~ 154 (528)
T KOG0253|consen 75 FQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTG 154 (528)
T ss_pred chhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHH
Confidence 35666677777777777777777888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCc
Q 010733 83 AATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIP 162 (502)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~ 162 (502)
+...+.++++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.+....++-.+..+ +
T Consensus 155 v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~-----~ 227 (528)
T KOG0253|consen 155 VFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN-----F 227 (528)
T ss_pred HHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh-----h
Confidence 9999999999999999999999999998 888889999999999998887777 99999999999999998888 9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCC----------------------------CCCCcchhh----
Q 010733 163 GWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDH----------------------------KPRRPFWAD---- 210 (502)
Q Consensus 163 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~---- 210 (502)
||||.....+.+..+.+...+.++|+|++...++++++. +.+....++
T Consensus 228 gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~ 307 (528)
T KOG0253|consen 228 GWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSS 307 (528)
T ss_pred hHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhc
Confidence 999999999988888888888899999886544332110 000000000
Q ss_pred -hHHHHHHhh----hhhhhhHHHHHHHHHHhhhhhhhHHHhHHHHHHHh--------------------CCChhHHHHHH
Q 010733 211 -IKDLITDAK----MVIKIPTFQIIVAQGVFGSFSGSAFAFAAMWLELI--------------------GFSHKLTAFLM 265 (502)
Q Consensus 211 -~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------g~s~~~~~~~~ 265 (502)
-++...... .-+|+..+......+...+.+|+.......+.+.. ..+...--.=.
T Consensus 308 a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdl 387 (528)
T KOG0253|consen 308 AAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDL 387 (528)
T ss_pred cccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHH
Confidence 001001111 12223333333222222222333332222222210 11111111223
Q ss_pred HHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHH-HHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCC
Q 010733 266 TLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAA-VLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPA 344 (502)
Q Consensus 266 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (502)
.+..+..+.|.++.+++.||+|||+.+ .+.+.+.. ..+......+.+. ....++..-++....+.
T Consensus 388 litslaefPGlLIt~~iverlGRKkTM-----------al~l~~f~iflfll~~c~~rn~--~tvllf~arafisg~fq- 453 (528)
T KOG0253|consen 388 LITSLAEFPGLLITGVIVERLGRKKTM-----------ALSLILFGIFLFLLTTCKTRNA--YTVLLFTARAFISGAFQ- 453 (528)
T ss_pred HHHHHhhCCchhHHHHHHHHhcchhHH-----------HHHHHHHHHHHHHHHHhcCcch--hHHHHHHHHHHHhchhe-
Confidence 456788999999999999999999632 11111111 1122222222222 22334444555555555
Q ss_pred cchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHH
Q 010733 345 TNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVV 381 (502)
Q Consensus 345 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~ 381 (502)
..+.|..|.+|...|+++.|....+..+|+++.|.++
T Consensus 454 vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 454 VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence 6799999999999999999999999999999999988
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-25 Score=217.19 Aligned_cols=359 Identities=15% Similarity=0.139 Sum_probs=247.9
Q ss_pred HHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 010733 12 NFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFS 91 (502)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~ 91 (502)
++.....++.....+.+++.+.+|+|- .....|+.+...++.++..++.|+++|.||||.+++.+.++..+|+++++-+
T Consensus 50 ~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA 128 (599)
T PF06609_consen 50 SLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA 128 (599)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC
Confidence 333334455666667888999999995 4689999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHH
Q 010733 92 STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLV 171 (502)
Q Consensus 92 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~ 171 (502)
+|...++++..+.|+|.|... .....++|..|.|.|....++.....-+....++.++..+..+ .+|||.|++.
T Consensus 129 ~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~-----~~WRw~~~~~ 202 (599)
T PF06609_consen 129 QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH-----SGWRWIFYIF 202 (599)
T ss_pred CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC-----CCcchHHHHH
Confidence 999999999999999977665 4566699999999998887777766656566777777766655 7999999999
Q ss_pred HHHHHHHHHHHHhhccCCcccccCCCc----cC-------------------------CCCCCcchhhhH----------
Q 010733 172 GLISVIVGVLVHVYANDPRCLAKDGTK----ID-------------------------HKPRRPFWADIK---------- 212 (502)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------------------------~~~~~~~~~~~~---------- 212 (502)
.+...+..++.+++...|++.+.+.++ ++ ......+|++.+
T Consensus 203 ~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~ 282 (599)
T PF06609_consen 203 IIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFV 282 (599)
T ss_pred HHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHH
Confidence 888777766655433333322211111 00 001122343311
Q ss_pred --------HHH-H-----Hhhhhhhh-hHHHHHHHHH-HhhhhhhhHHHhHHHHHH-HhCCCh---hHHHHHHHHHHHHH
Q 010733 213 --------DLI-T-----DAKMVIKI-PTFQIIVAQG-VFGSFSGSAFAFAAMWLE-LIGFSH---KLTAFLMTLFVIAF 272 (502)
Q Consensus 213 --------~~~-~-----~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~g~s~---~~~~~~~~~~~~~~ 272 (502)
+.. . -..+++++ |.+...++.. +....++....+.|.... .++-++ ...++...+.+++.
T Consensus 283 ~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~ 362 (599)
T PF06609_consen 283 LLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGS 362 (599)
T ss_pred HHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHH
Confidence 110 0 12356665 5565544443 344445566666676665 465554 35678888888888
Q ss_pred hhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhh
Q 010733 273 CLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAE 352 (502)
Q Consensus 273 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 352 (502)
.++.++.|.+..+++|-| ..++...... ....+ ++.....++.... ....++.|++.+.... .....++-
T Consensus 363 ~~g~~i~g~l~~~ir~~K-----w~li~~~~~~-ta~~G-ama~~~~~n~~~~--i~~~~l~g~giG~~~~-~~~~~~ql 432 (599)
T PF06609_consen 363 CAGAVILGLLFSKIRHIK-----WQLIFGSVLM-TAFCG-AMAAVRPDNKNAA--IAFLVLAGFGIGGILV-PAIVIAQL 432 (599)
T ss_pred HHHHHHHHHHHHHccchh-----HHHHHHHHHH-HHHHH-HHHHccCCCcchH--HHHHHHHHHhHHHHHH-HHHHeeEe
Confidence 899999999998887553 3322222222 21112 2222222333222 3445566777777666 56777777
Q ss_pred ccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 353 IVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 353 ~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
..|++..|++.|+..+++.+|+.++..+...+..+
T Consensus 433 ~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n 467 (599)
T PF06609_consen 433 IVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTN 467 (599)
T ss_pred eeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88999999999999999999999999988776654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=218.87 Aligned_cols=374 Identities=14% Similarity=0.114 Sum_probs=249.1
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhhc-c-------CCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKEVGAAL-H-------TDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALG 77 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~-------~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~ 77 (502)
+.+.+..++.+.+.+|..+++.+.|.+...+ | .++...+.+..+..+|.++++++.|+++||+|||+++...
T Consensus 41 k~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~ 120 (538)
T KOG0252|consen 41 KAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKE 120 (538)
T ss_pred HHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHH
Confidence 4566777788999999999999988887765 2 2334567888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh-------hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHH
Q 010733 78 AFLWAAATFLVAFSS-------TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCS 150 (502)
Q Consensus 78 ~~l~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 150 (502)
+++..++++++++.. -.+++...|++.|+|.|+-+|.+.++.+|...+++||...+...+..+.|...|.+++
T Consensus 121 liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt 200 (538)
T KOG0252|consen 121 LIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVA 200 (538)
T ss_pred HHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHH
Confidence 999999999888763 2478899999999999999999999999999999999999999999999988888887
Q ss_pred HHHHhh---ccC-------CCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccC----------C------CCC
Q 010733 151 VLIAST---SFM-------GIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKID----------H------KPR 204 (502)
Q Consensus 151 ~~l~~~---~~~-------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~------~~~ 204 (502)
-.+... ... -+.=||..|.+.++++++.....+..||++++.....++.+ . +..
T Consensus 201 ~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~ 280 (538)
T KOG0252|consen 201 LIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTA 280 (538)
T ss_pred HHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhcc
Confidence 665531 111 12359999999999988888888888887766521111100 0 000
Q ss_pred CcchhhhHHHHHHhhhhhhhhHHHHHHH----HHHhhhhhhhHHHhHHHHHHHhCCChhHHHH--------HHHHHH-HH
Q 010733 205 RPFWADIKDLITDAKMVIKIPTFQIIVA----QGVFGSFSGSAFAFAAMWLELIGFSHKLTAF--------LMTLFV-IA 271 (502)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~--------~~~~~~-~~ 271 (502)
.......++....+.+.+..+....++. .+..-...|....+....++..|+.+.+... ...+.. .+
T Consensus 281 ~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~ 360 (538)
T KOG0252|consen 281 ESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCS 360 (538)
T ss_pred ccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHc
Confidence 0000000111111112222221111111 1122222344444666677766765543332 222333 33
Q ss_pred HhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHhhhcCCCCcchhhh
Q 010733 272 FCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDD-PSTAFLHGLALFIMGLCMSWNAPATNNPIF 350 (502)
Q Consensus 272 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 350 (502)
.+.|..+...++|++||++.. +.-...+. ...+.+..+.+ ......+.++..+..++..+........+.
T Consensus 361 ~vPGyw~tv~~id~iGRk~iq--------~~GF~~~~-i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivp 431 (538)
T KOG0252|consen 361 TVPGYWFTVYFIDIIGRKYIQ--------LMGFFIMT-IFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVP 431 (538)
T ss_pred cCCceeEEEEEeehhhhHHHH--------HhhHHHHH-HHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEee
Confidence 445777888899999999522 11111111 11112222222 111112233333444444444444678889
Q ss_pred hhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 351 AEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 351 ~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
+|.+|.+.|++..|+....+-.|++++.....++.++.
T Consensus 432 aE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~ 469 (538)
T KOG0252|consen 432 AEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN 469 (538)
T ss_pred hhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc
Confidence 99999999999999999999999999999999998853
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-25 Score=213.85 Aligned_cols=356 Identities=13% Similarity=0.028 Sum_probs=243.6
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHH--HHHHHHHHHHhhhhh-hHhhhccCchHHHHHHHHH-HHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSL--TLFRSIVQSFCYPLA-AYLSAHHNRAHVIALGAFL-WAA 83 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~--~s~~~l~~~~~~~~~-G~l~dr~G~r~~~~~~~~l-~~~ 83 (502)
+..++..++..+.......+.+|.+.+|.|.|.+++|++ .++..+...+.+|+. ++..||+||||..++.+.+ .++
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 556677788889998999999999999999999999997 466788888888888 4579999999987555533 222
Q ss_pred HHHHHH---hhhh-HHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccC
Q 010733 84 ATFLVA---FSST-FFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFM 159 (502)
Q Consensus 84 ~~~~~~---~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 159 (502)
.....+ ...+ ..+++..-++.++..+...+...++..|+.++++++...+....+..+|.++|+.+.+++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~--- 159 (390)
T TIGR02718 83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK--- 159 (390)
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 222222 2222 334445556667777888888888999999888889889999999999999999999999987
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh
Q 010733 160 GIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF 239 (502)
Q Consensus 160 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (502)
.+||..|++.+++.++..+..++.+|+++.+++ . + ++..++.++.+|+|.++......++...
T Consensus 160 --~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~---~-----~-------~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 222 (390)
T TIGR02718 160 --FGQRPAFLLVACVPLASLVCVLWLKDRAVASPE---A-----P-------LARRASLFRFFRRPLAWSLLALALLSAM 222 (390)
T ss_pred --hCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccc---c-----c-------hhhHHHHHHHHcCcCHHHHHHHHHHHHH
Confidence 899999999998887776666555544321100 0 0 0111234566777766655544444433
Q ss_pred -hhhHHHhHHHHHHHhCCChhHHHHHHHHHHH-HHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhc
Q 010733 240 -SGSAFAFAAMWLELIGFSHKLTAFLMTLFVI-AFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVL 317 (502)
Q Consensus 240 -~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (502)
......+.+.|+++.|+++.+.+......++ ..+++.++.|++.||+++|+ .............+........
T Consensus 223 ~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~-----~l~~~~~~~~~~~~~~~~~~~~ 297 (390)
T TIGR02718 223 TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR-----TFILGVGLAGSLALLWFAQAAF 297 (390)
T ss_pred HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHc
Confidence 3455567888998899999999999887764 66677899999999999984 2222111110111111111111
Q ss_pred CCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCC-CCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcC
Q 010733 318 PDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPE-RCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGY 391 (502)
Q Consensus 318 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~ 391 (502)
..... .........+.++..+...+ ...+...+..++ +.+++.+++.+...+++..++|.+.|.+.|.. |+
T Consensus 298 ~~~~~-~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~-G~ 369 (390)
T TIGR02718 298 WLAPG-IAVAWSCSAFGSLITGITSV-AIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF-GY 369 (390)
T ss_pred ccCCc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc
Confidence 11111 11222223333444454444 455565666665 88999999999999999999999999999984 54
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=208.41 Aligned_cols=339 Identities=17% Similarity=0.132 Sum_probs=222.4
Q ss_pred CCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 010733 39 DPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSL 118 (502)
Q Consensus 39 s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 118 (502)
+..-.|.+.+.|++.+.+.++.+|.++||+|||.+++++++..++..++.++++||..+.++|++.|+.-| ....+.++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAi 144 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAI 144 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHH
Confidence 44457999999999999999999999999999999999999999999999999999777777999999876 55677899
Q ss_pred HhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhh-ccCCCcchhHHHHHHHHHHHH-HHHHHHhhccCCcccccCC
Q 010733 119 VADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST-SFMGIPGWRLAFHLVGLISVI-VGVLVHVYANDPRCLAKDG 196 (502)
Q Consensus 119 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-~~~~~~~w~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 196 (502)
++|.+++|+|+++++.....+++|.++||.+|+++.+. ...+.+..-.+-++..++... .....+++||.-+ .++++
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~-~rk~~ 223 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP-LRKRN 223 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc-chhhc
Confidence 99999999999999999999999999999999999872 112222222222222233332 3333445555422 22221
Q ss_pred CccC-CCCCCcchhhhHH-HHHHhhhhhhhhH-------HHHHHHHHHhhhhhhhHHHhHHHHH--HHhCCChhHHHHHH
Q 010733 197 TKID-HKPRRPFWADIKD-LITDAKMVIKIPT-------FQIIVAQGVFGSFSGSAFAFAAMWL--ELIGFSHKLTAFLM 265 (502)
Q Consensus 197 ~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~s~~~~~~~~ 265 (502)
+... ..+..+...+..+ .....-...|++. +..+....+.+...+....+.+..+ ..+|+++.+.|.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl 303 (451)
T KOG2615|consen 224 DEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVL 303 (451)
T ss_pred ccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeee
Confidence 1100 0000000000000 0011111222222 2223333333333444444455555 35899999999999
Q ss_pred HHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCc
Q 010733 266 TLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPAT 345 (502)
Q Consensus 266 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (502)
+..++.+.+.+....+..+|.+... . ........+..+ .+.+ ....... ..+.+...+..+..+...+ .
T Consensus 304 ~~tGl~m~~~ql~~~~~l~~~~~~~--~---a~l~~~l~~~vP--~~ll--ls~~~~~-~~l~~~s~l~sf~~A~~vt-~ 372 (451)
T KOG2615|consen 304 STTGLLMLVIQLALVPILPRYKGNI--K---AVLLFSLLLIVP--AFLL--LSLARTP-VVLYLGSTLKSFSTASVVT-C 372 (451)
T ss_pred ehhhHHHHHHHHhccccccccccch--h---hHHHHHHHHHHH--HHHH--Hhccccc-hhhhHHHHHHHHHHHHhhH-H
Confidence 9999988888877777777655221 0 111111112222 1111 2222222 2344556666777777776 7
Q ss_pred chhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhc
Q 010733 346 NNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYG 390 (502)
Q Consensus 346 ~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~ 390 (502)
...+.....|+++||+++|+....+.++-++||.+.|.+..+..+
T Consensus 373 Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~ 417 (451)
T KOG2615|consen 373 LTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQG 417 (451)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecC
Confidence 788889999999999999999999999999999999988776433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-31 Score=263.82 Aligned_cols=399 Identities=17% Similarity=0.180 Sum_probs=267.2
Q ss_pred HHHHHHHHHHhhccchhhHHHHh--hhccCCCc---------cchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHH
Q 010733 11 VNFAAIMERADESMLPGVYKEVG--AALHTDPT---------GLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAF 79 (502)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~--~~~~~s~~---------~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~ 79 (502)
..++.+..+++....+...+... .+++.+.. +.+++.+...++..+|+++.|+++||+|||++++++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 34556888888888777765554 22332222 35789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh---hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 80 LWAAATFLVAFSS---TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 80 l~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
+..+++++.++++ |++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++..+...
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999998887655332
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCc----------chhhhHH-HH------HHhh
Q 010733 157 SFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRP----------FWADIKD-LI------TDAK 219 (502)
Q Consensus 157 ~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~------~~~~ 219 (502)
.+...||+.+++.+++.++..+..+++||+|++...+++.++.++... +.++.++ .. ..++
T Consensus 165 --~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (451)
T PF00083_consen 165 --SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWR 242 (451)
T ss_pred --cccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeee
Confidence 112469999999999998888888889999999766655443221100 0000000 00 1233
Q ss_pred hhhhhhH-----HHHHHHHHHhhhhh-hhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCc
Q 010733 220 MVIKIPT-----FQIIVAQGVFGSFS-GSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDS 293 (502)
Q Consensus 220 ~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 293 (502)
++++++. +..+.+..+..... +....+.+.+++..+.+.. -.......+...++.+++.++.||+|||+..
T Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~- 319 (451)
T PF00083_consen 243 DLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLL- 319 (451)
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccc-
Confidence 4444432 22222222222222 2333466777777777666 2333445566777888888999999999632
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HhhcCCCCc---hHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhh
Q 010733 294 GRVILSQISAASVIPTAAVL-LLVLPDDPS---TAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSF 369 (502)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 369 (502)
.. ......++...+. ........+ ... ......+.....+....+..+.+..|.+|++.|+++.|+....
T Consensus 320 ----i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~ 393 (451)
T PF00083_consen 320 ----II-GLLLMAICSLILGIIFFLGVSSSSWWSIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAV 393 (451)
T ss_pred ----cc-ccccccccccccccccccccccccccccc-cceeeeecccccccccccccccccccccccccccccccccccc
Confidence 11 1111111111111 011111111 111 1112222222222222225678899999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHhcCCCCCCCCCCcchhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc
Q 010733 370 ESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAIYAAMSIPMAICCIIYSFLYCSYPNDRGQAT 448 (502)
Q Consensus 370 ~~~~~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (502)
+++++.+++.+...+.+..+... .+.+..+++.+...+.+...||+++++.
T Consensus 394 ~~i~~~i~~~~~~~~~~~~~~~~----------------------------~~~i~~~~~~i~~i~~~~~lpET~g~~l 444 (451)
T PF00083_consen 394 GRIGGFIIPFLFPYLFNNLGGWG----------------------------VFLIFAGVCLIAIIFVYFFLPETKGKTL 444 (451)
T ss_pred ccccccccccccccccccccccc----------------------------cchhhHHHHHHHHhheeEEEeeCCCCCH
Confidence 99999999999888877643121 2233444555666667788899988764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-24 Score=212.19 Aligned_cols=369 Identities=14% Similarity=0.091 Sum_probs=251.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHH
Q 010733 3 SETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWA 82 (502)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~ 82 (502)
+||..+.......... ...+.++...|.+++++|+|..+++++.++. .....++++.|++.||+|+|++++++.++++
T Consensus 25 ~Rw~~lva~~~~~~~~-g~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~ 102 (591)
T PTZ00207 25 RRFALLVLGAFCSICT-SFMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC 102 (591)
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3555444444433333 3345666778899999999999999998874 3455678889999999999999999999999
Q ss_pred HHHHHHHhh------hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 83 AATFLVAFS------STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 83 ~~~~~~~~~------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
+++++++++ ++++.+++.|++.|+|.+...+.+...+.+|+| ++||+++|+...+.++|.++.+.+...+..
T Consensus 103 iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~- 180 (591)
T PTZ00207 103 LGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS- 180 (591)
T ss_pred HHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999997 689999999999999999999999999999996 789999999999999999865555554444
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCccccc---CC---CccCC-----------------------------
Q 010733 157 SFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAK---DG---TKIDH----------------------------- 201 (502)
Q Consensus 157 ~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~----------------------------- 201 (502)
.+|+..|++.+++.++..++.+.+.++|+.... ++ +.++.
T Consensus 181 -----~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l 255 (591)
T PTZ00207 181 -----DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIIL 255 (591)
T ss_pred -----HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHH
Confidence 368899999999988888877776555532211 00 00000
Q ss_pred --------------------------------------------------C-CCCc---ch---------hhh---HHHH
Q 010733 202 --------------------------------------------------K-PRRP---FW---------ADI---KDLI 215 (502)
Q Consensus 202 --------------------------------------------------~-~~~~---~~---------~~~---~~~~ 215 (502)
+ +.+. +. ++. ....
T Consensus 256 ~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (591)
T PTZ00207 256 IVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDV 335 (591)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccc
Confidence 0 0000 00 000 0000
Q ss_pred H--------HhhhhhhhhHHHHHHHHHHhhhhh-hhHHHhHHHHHHHh-CCChhH--HHHHHHHHHHHHhhhhhhhHhHh
Q 010733 216 T--------DAKMVIKIPTFQIIVAQGVFGSFS-GSAFAFAAMWLELI-GFSHKL--TAFLMTLFVIAFCLGGLFGGKMG 283 (502)
Q Consensus 216 ~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-g~s~~~--~~~~~~~~~~~~~~~~~~~g~l~ 283 (502)
+ ..++.+++..+|++....++.... ....+.+..+.+.+ |.+... ...+.++.++++.+|++..|.+.
T Consensus 336 ~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~ 415 (591)
T PTZ00207 336 DYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE 415 (591)
T ss_pred cCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH
Confidence 0 233445566788877777776664 34445666777766 763322 22378889999999999999988
Q ss_pred hhhhhcCCC--chhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchh
Q 010733 284 DILAQRLPD--SGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTS 361 (502)
Q Consensus 284 d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~ 361 (502)
....+|+.. ..|......... +.+..+++... ... ..+.+..++.|++.|..++ +....++|++. ++-|+
T Consensus 416 ~~~~~~~~~~r~prt~~l~~~~~--~~~~~lll~~~-~p~---~~L~~~~~lvg~~~G~~~~-~~~~i~selFg-k~~g~ 487 (591)
T PTZ00207 416 IWSQKRRAEDRVPITIALFIPSV--CIITMLTLFLT-LPK---AALPLPYFIAAFANGFMAA-TIALVTRTIFA-KDPAK 487 (591)
T ss_pred HHHHhhccccccchhHHHHHHHH--HHHHHHHHHHH-CCc---cHhHHHHHHHHHHhhHhHH-HHHHHHHHHhc-cchHH
Confidence 433333311 112222222222 22222222221 111 1255677888999999888 88999999999 88888
Q ss_pred hHhHHHhhhhhhhchh-HHHHHHHHHHH
Q 010733 362 IYALDQSFESIPSSFA-PAVVGILAQHV 388 (502)
Q Consensus 362 ~~g~~~~~~~~~~~i~-~~~~g~l~~~~ 388 (502)
-.-+.....-+|+.+- -.++|.++|+.
T Consensus 488 ~yN~~~~a~pigs~~~n~~l~G~~Yd~e 515 (591)
T PTZ00207 488 HYNFCFLGSVLSAIFLNRLLYGEWYTQQ 515 (591)
T ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777777665 56888888874
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-24 Score=212.01 Aligned_cols=371 Identities=14% Similarity=0.056 Sum_probs=231.0
Q ss_pred HHHHHHHHHHHHHHHhhccchhhH-HHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhc-cCchHHHHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVY-KEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAH-HNRAHVIALGAFLWAA 83 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~G~r~~~~~~~~l~~~ 83 (502)
+.+..+++..+.+.+..+.....+ .++.+++|.+.++.+++.+.+........+++|+++|| +|||+++.++.++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~i 100 (500)
T PRK09584 21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAI 100 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 345666677777777666555554 45678999999999999988877766777899999999 5999999999999999
Q ss_pred HHHHHHhhh-hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCccc--chhHHHHHHHHHhhhHhHHHHHHHHHHhhccCC
Q 010733 84 ATFLVAFSS-TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETN--RGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMG 160 (502)
Q Consensus 84 ~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~ 160 (502)
+..++++++ +.+.+++.|+++|++.|...+...+++.+++|+++ |.+++++++.+.++|..+||.+++++.++
T Consensus 101 g~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~---- 176 (500)
T PRK09584 101 GYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK---- 176 (500)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 999999874 56677788999999999999999999999998653 45688999999999999999999999987
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHh---hccCCcccccCCCccCCCC------------------CCcchhhh--------
Q 010733 161 IPGWRLAFHLVGLISVIVGVLVHV---YANDPRCLAKDGTKIDHKP------------------RRPFWADI-------- 211 (502)
Q Consensus 161 ~~~w~~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~-------- 211 (502)
.|||+.|++.++..++..+.... ..++....+.+++.+.... ........
T Consensus 177 -~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (500)
T PRK09584 177 -YGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALG 255 (500)
T ss_pred -hCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 89999999987654544433322 2222110110000000000 00000000
Q ss_pred --HHHHH---HhhhhhhhhHHHHHHHHHHhhhhhhhHHHhHHHHHHH---hCCCh------hHHHHHHHHHHHHHhhhhh
Q 010733 212 --KDLIT---DAKMVIKIPTFQIIVAQGVFGSFSGSAFAFAAMWLEL---IGFSH------KLTAFLMTLFVIAFCLGGL 277 (502)
Q Consensus 212 --~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~------~~~~~~~~~~~~~~~~~~~ 277 (502)
....+ ..++.-+++.+ ..+...+.....|......|.++.. ...+. ...+++.+...+..++..+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p 334 (500)
T PRK09584 256 IVVIFGKEAFAMKGAARRKMI-VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSP 334 (500)
T ss_pred HHHHHHHHHhhcCHHHHHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHH
Confidence 00000 01112222222 2222333333344444455555432 11111 1255667777777778778
Q ss_pred hhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCC
Q 010733 278 FGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLP-DDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPE 356 (502)
Q Consensus 278 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~ 356 (502)
+.+++.+|.++|.....+..........+............ ...-+.+......++.|++.....| ...+++.+..|+
T Consensus 335 ~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p-~g~s~~~~~aP~ 413 (500)
T PRK09584 335 ILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISG-LGLAMVAQLVPQ 413 (500)
T ss_pred HHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhH-HHHHHHHHhCcH
Confidence 87777777776643322222222222222111111110000 0111233456778888999999988 889999999999
Q ss_pred CCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 357 RCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 357 ~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
+.||+++|+...... +++.+.|.+.+.
T Consensus 414 ~~rg~~~g~~~l~~a----~g~~~~g~~~~~ 440 (500)
T PRK09584 414 RLMGFIMGSWFLTTA----GAALIAGYVANL 440 (500)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 999999996655444 445555555443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=218.10 Aligned_cols=332 Identities=17% Similarity=0.133 Sum_probs=226.7
Q ss_pred hhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhh
Q 010733 34 AALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIP 113 (502)
Q Consensus 34 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 113 (502)
+.++.+.....+..+++++|..+|.+++|+++||+|||++++.++++..++.++.++++|++.+++.|+++|++.++...
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 45566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccc
Q 010733 114 AIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLA 193 (502)
Q Consensus 114 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (502)
....++.|++++++|+.+..+ ......+..++++.++++.+ +||+.+++..++.++..++.++.+|+|++..
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-------~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~ 262 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-------DWRWLFWIISIPSGLFLLLWFLPPESPRWLL 262 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHccCcChHHHH
Confidence 999999999999999999999 77777788888888888764 7999999999998888877555668888876
Q ss_pred cCCCccCCC-----------CCCcchhhhHHH--H-----------HHhhhhhhhhHHHHHHHHHHhhhhhhhHHHh-HH
Q 010733 194 KDGTKIDHK-----------PRRPFWADIKDL--I-----------TDAKMVIKIPTFQIIVAQGVFGSFSGSAFAF-AA 248 (502)
Q Consensus 194 ~~~~~~~~~-----------~~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 248 (502)
.+++.++.. .....++..+.. . .....+++.+.+....+...+.+..+....+ ++
T Consensus 263 ~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~ 342 (521)
T KOG0255|consen 263 SKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLS 342 (521)
T ss_pred HcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 655542211 011111111111 0 0123444554433333333333333333333 33
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHH
Q 010733 249 MWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHG 328 (502)
Q Consensus 249 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (502)
......|.+.... ....+.....+....+...|+.|||... . .. .....+..+........... ....
T Consensus 343 ~~~~~lg~~~~~~---~~~~~~~~~p~~~~~~~~~~~~gR~~~~------~-~~-~~~~~~~~~~~~~~~~~~~~-~~~~ 410 (521)
T KOG0255|consen 343 LNVSGLGGNIYLN---FTLSGLVELPAYFRNGLLLPEFGRRPPL------F-LS-LFLAGIGLLLFGWLPDDLGG-WLHW 410 (521)
T ss_pred hhhhhcCchHHHH---HHHHHHHHhhHHHHHHHHHHHhCcHHHH------H-HH-HHHHHHHHHHHHHhhccchh-HHHH
Confidence 3333455554433 3333446667777778999999888421 1 11 11111122222222222221 1122
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHH
Q 010733 329 LALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQ 386 (502)
Q Consensus 329 ~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~ 386 (502)
+...+..++.+.... ..+.+..|.+|+..|..+.+..+....++++++|.+.-....
T Consensus 411 ~~~~~~~~~~~~~~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 411 ILPLLGKFFIGSAFN-LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222223333333333 448899999999999999999999999999999998755544
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=205.79 Aligned_cols=367 Identities=12% Similarity=0.021 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccC-----chHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHN-----RAHVIALGAFL 80 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G-----~r~~~~~~~~l 80 (502)
..+.++...++..+........+.|.+.+++|+++++++...+...+...+-.+ +|.++||++ ||+.++++.++
T Consensus 26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence 445566667777777744455666777888999999999999999999988655 999999998 77778888777
Q ss_pred HH-HHHHHHHhhhhHHHH-HHHHHHHHhhhhhhhhHHHHHHhhccCcccchhH---HHHHHHHHhhhHhHHHHHHHHHHh
Q 010733 81 WA-AATFLVAFSSTFFQV-AVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMA---FGWLQLTGYLGSVLGGFCSVLIAS 155 (502)
Q Consensus 81 ~~-~~~~~~~~~~~~~~l-~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~---~~~~~~~~~~G~~~g~~l~~~l~~ 155 (502)
.. +.....+..++.... .+..++.+++.+...++..++..|..+ +++... .++......+|.++|+.+++.+.+
T Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~ 183 (468)
T TIGR00788 105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD 183 (468)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 444444444554444 448899999999999999999999998 555443 334444456899999999999998
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCC---C-CCcchhhhHHHHHHhhhhhhhhHHHHHH
Q 010733 156 TSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHK---P-RRPFWADIKDLITDAKMVIKIPTFQIIV 231 (502)
Q Consensus 156 ~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (502)
. .+||..|++.+++.++..+..++++|+++....+..+++.. . .....+..++..++.++.+++|..+..+
T Consensus 184 ~-----~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l 258 (468)
T TIGR00788 184 K-----TLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPL 258 (468)
T ss_pred h-----cCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 7 89999999998888777555555555431111110000000 0 0000001223344455566777766544
Q ss_pred HHHHh-hhhhhhHH-H-hHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHH
Q 010733 232 AQGVF-GSFSGSAF-A-FAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIP 308 (502)
Q Consensus 232 ~~~~~-~~~~~~~~-~-~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 308 (502)
+..++ .....+.. . +. ...+..|+++.+.|......+++.+++..+.+++.+|++.|+ .+.. ...+...
T Consensus 259 ~fifl~~~~~~~~~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~-----~l~~--~~~l~~~ 330 (468)
T TIGR00788 259 IFIFLSYANLPGASGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRL-----LFGV--TTLLYTL 330 (468)
T ss_pred HHHHHHHhhcCCCCceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHH-----HHHH--HHHHHHH
Confidence 43333 11111111 1 11 111358999999999999999999999999999888888773 1111 1111111
Q ss_pred HHHHHHhh---cC--CCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHH
Q 010733 309 TAAVLLLV---LP--DDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGI 383 (502)
Q Consensus 309 ~~~~~~~~---~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~ 383 (502)
........ +. ...+..+.+....++.+++.+.... ....++++..|++.+|+.+++.+++.++|..+++.++|.
T Consensus 331 ~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~-~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~ 409 (468)
T TIGR00788 331 SSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFM-PFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVL 409 (468)
T ss_pred HHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHc-cHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 01000000 00 0001122233444556666666666 568999999999999999999999999999999999999
Q ss_pred HHHHH
Q 010733 384 LAQHV 388 (502)
Q Consensus 384 l~~~~ 388 (502)
+.+..
T Consensus 410 l~~~~ 414 (468)
T TIGR00788 410 LMETI 414 (468)
T ss_pred HHHHc
Confidence 99885
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-22 Score=192.66 Aligned_cols=350 Identities=18% Similarity=0.230 Sum_probs=247.4
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccC-chHHHHHHHHHHHHHHHHHH
Q 010733 11 VNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHN-RAHVIALGAFLWAAATFLVA 89 (502)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G-~r~~~~~~~~l~~~~~~~~~ 89 (502)
++.-+++.++....+.|.++.+-++.|.|..|+|.+.+...+...++++++|.++||++ +||++.+..++.++......
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~ 86 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666777778889999999999999999999999999999999999999986 57788888888888888888
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHH-HHHHhhccCCCcchhHHH
Q 010733 90 FSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCS-VLIASTSFMGIPGWRLAF 168 (502)
Q Consensus 90 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~-~~l~~~~~~~~~~w~~~f 168 (502)
..++++.+++.-++..+......|...++..++.. ++++-.|-.....++|.+++.... ..+... .+..+..+.+
T Consensus 87 ~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~--~~~~~~~~~~ 162 (400)
T PF03825_consen 87 FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGY--LGISGTSLIF 162 (400)
T ss_pred HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhh--hccccccHHH
Confidence 88899999888888888888888999998888874 445556777777777877775542 333322 0112334566
Q ss_pred HHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhh-HHHhH
Q 010733 169 HLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGS-AFAFA 247 (502)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 247 (502)
++.+...++.....+.+|+.|+.+..+++. + +...++..+++|+|.+..+++..+....... ..+|.
T Consensus 163 ~i~~~~~~ll~~~~l~lp~~~~~~~~~~~~-----~-------~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~ 230 (400)
T PF03825_consen 163 YIAAILSLLLAGFALFLPKTPPKRSAKESV-----K-------KLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFF 230 (400)
T ss_pred HHHHHHHHHHHHHHHhCCCCccccccCCCc-----c-------cccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665555666655221111110 0 1111233467788888777666665555444 45689
Q ss_pred HHHHHHhC-CChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCC-CchHH
Q 010733 248 AMWLELIG-FSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDD-PSTAF 325 (502)
Q Consensus 248 ~~~~~~~g-~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 325 (502)
+.|+++.| .+....+.+.+...++.++.-...+++.+|+|.++ ...++.....+=....... ++.+.
T Consensus 231 ~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~-----------ll~~a~~~~~vR~~l~a~~~~~~~~ 299 (400)
T PF03825_consen 231 SIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKW-----------LLLLALVAYAVRWLLYAYFSDPWPF 299 (400)
T ss_pred HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-----------HHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 99999988 78888888888888999999999999999999884 1112222222211111111 12222
Q ss_pred HH---HHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhh-hhhhchhHHHHHHHHHHH
Q 010733 326 LH---GLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFE-SIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 326 ~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~~~~i~~~~~g~l~~~~ 388 (502)
.. .+...+-|+..+.... ....++.+..|++.|+++.++++... .+|+.+|..++|++.|+.
T Consensus 300 ~~~~~~l~q~lhG~tf~~~~~-a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~ 365 (400)
T PF03825_consen 300 IVALQLLGQLLHGLTFGLFHA-ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAF 365 (400)
T ss_pred HHHHHHHHHhhhhHHHHHHHH-HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 11 1223457888877777 77899999999999999999998764 789999999999999995
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=201.02 Aligned_cols=342 Identities=13% Similarity=0.175 Sum_probs=230.1
Q ss_pred hhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhc----cCchH-HHHHHHHHHHHHHHHHHhhhh------H
Q 010733 26 PGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAH----HNRAH-VIALGAFLWAAATFLVAFSST------F 94 (502)
Q Consensus 26 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~G~r~-~~~~~~~l~~~~~~~~~~~~~------~ 94 (502)
..+.+++.+++|+++.++|.+.++..+..++..|+.|+++|| +|||| .++.+.+..+++.++....++ +
T Consensus 30 ~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~ 109 (444)
T PRK09669 30 LFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI 109 (444)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 345667888999999999999999999999999999999999 78755 566777777777766655543 4
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhcc-CcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhcc--CCCcchhHHHHHH
Q 010733 95 FQVAVSRGLNGIGLAIVIPAIQSLVADST-DETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSF--MGIPGWRLAFHLV 171 (502)
Q Consensus 95 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~--~~~~~w~~~f~~~ 171 (502)
+.+++..++.+.+.........++.+|+. ++++|.+..++...+..+|..+++.+...+..... ....+|+..+.+.
T Consensus 110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~ 189 (444)
T PRK09669 110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVM 189 (444)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 56666677777777777778889999988 55789999999998888888888776655443211 1125899999888
Q ss_pred HHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhHHH-hHHHH
Q 010733 172 GLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAFA-FAAMW 250 (502)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 250 (502)
+++.++..++.++..+|++..++ + ++ .+..++.+.+++|+.++.++...++......... ..+.|
T Consensus 190 ~ii~~v~~~~~~~~~~e~~~~~~-----~--~~-------~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~ 255 (444)
T PRK09669 190 GLLGVVLFFCCFFMTKERYTPEV-----D--NS-------SSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYY 255 (444)
T ss_pred HHHHHHHHHHHhCCeEEecCCCC-----c--CC-------CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhhee
Confidence 88877776665554433211110 0 00 1123456677888888877666555444333322 33333
Q ss_pred HHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 010733 251 LELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLA 330 (502)
Q Consensus 251 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (502)
.+..-.++...+.+.....+..+++.++.+++.||+++|+ ...... ..... ....+...+ .+..+.+.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~-----~~~~~~--~~~~~-~~~~~~~~~--~~~~~~~~~~ 325 (444)
T PRK09669 256 VNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR-----AFKWTI--VAFVI-LSALIFFIP--PSNVWLIFAL 325 (444)
T ss_pred eeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-----HHHHHH--HHHHH-HHHHHHHhC--cchHHHHHHH
Confidence 3322223334445555566778888889999999999884 222111 11111 111112222 2223334455
Q ss_pred HHHHHHhhhcCCCCcchhhhhhccC-------CCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCCC
Q 010733 331 LFIMGLCMSWNAPATNNPIFAEIVP-------ERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYKP 393 (502)
Q Consensus 331 ~~~~g~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~~ 393 (502)
.++.|++.+...+ ..++++.|..+ .+..|...|..+.+..+|..+++.+.|.+.+. .||+.
T Consensus 326 ~~i~g~~~~~~~~-~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~-~Gy~~ 393 (444)
T PRK09669 326 NILFNFIQNLTTP-LQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW-VDYVG 393 (444)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC
Confidence 6677888887776 77888888874 34456788999999999999999999999998 57753
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-22 Score=199.84 Aligned_cols=363 Identities=14% Similarity=0.144 Sum_probs=233.1
Q ss_pred HHHHHHHHHhhccchh-hHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhh----ccCc-hHHHHHHHHHHHHHH
Q 010733 12 NFAAIMERADESMLPG-VYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSA----HHNR-AHVIALGAFLWAAAT 85 (502)
Q Consensus 12 ~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~d----r~G~-r~~~~~~~~l~~~~~ 85 (502)
.++.+...+......+ +..++.+.+|+++.++|.+..+.-+.-++..|+.|+++| |+|| |+.++++.+..+++.
T Consensus 12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~ 91 (473)
T PRK10429 12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL 91 (473)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence 3444444444444444 455677778999999999999999999999999999999 6699 556777888888887
Q ss_pred HHHHhhh------hHHHHHHHHHHHHhhhhhhhhHHHHHHhhcc-CcccchhHHHHHHHHHhhhHhHHHHHHHHHHhh-c
Q 010733 86 FLVAFSS------TFFQVAVSRGLNGIGLAIVIPAIQSLVADST-DETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST-S 157 (502)
Q Consensus 86 ~~~~~~~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-~ 157 (502)
.++...+ .+..+++..++.+++.....+...+++.|.. +++||.+..++-..+.++|..+.+.+...+.+. +
T Consensus 92 ~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g 171 (473)
T PRK10429 92 FLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVG 171 (473)
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6664433 1345566677778888888889999999998 588999999997787888776666655544321 1
Q ss_pred -cCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHh
Q 010733 158 -FMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVF 236 (502)
Q Consensus 158 -~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (502)
.....+|+....+.+++.++..++.++..+|+......+.. + +++. +.+ ...+.+++|+.++.++...+.
T Consensus 172 ~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~--~~~~---~~~---~~~~~~~~n~~~~~ll~~~~~ 242 (473)
T PRK10429 172 GGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSA-E--GSHL---TLK---DIVALIYKNDQLSCLLGMALA 242 (473)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccc-c--ccCC---CHH---HHHHHHhcCHHHHHHHHHHHH
Confidence 01123688888877777776666655533332111100000 0 0011 112 233456678887776666555
Q ss_pred hhhhhhH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHh
Q 010733 237 GSFSGSA-FAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLL 315 (502)
Q Consensus 237 ~~~~~~~-~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (502)
....... ..+.+.|.+....+....+.+.....++.+++.++.+++.||+|+|+ ......... .+........
T Consensus 243 ~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~-----~~~~~~~~~-~~~~~~~~~~ 316 (473)
T PRK10429 243 YNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI-----LWAGASIFP-VLSCGVLLLM 316 (473)
T ss_pred HHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-----HHHHHHHHH-HHHHHHHHHH
Confidence 5443333 33455555543335556667777777888999999999999999984 222111111 1111111111
Q ss_pred hcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccC-------CCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 316 VLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVP-------ERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
..... ...+.+.+..++.|++.+.... ...++.+|..+ .+..|..+|....+..++..+++.+.|.+.+.
T Consensus 317 ~~~~~-~~~~~~~i~~~l~g~~~~~~~~-~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~- 393 (473)
T PRK10429 317 GLAAP-HNALLIVIAGILLNIGTALFWV-LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL- 393 (473)
T ss_pred hccCc-hhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 11112 2233334455566676666665 66788888855 44456689999999999999999999999998
Q ss_pred hcCC
Q 010733 389 YGYK 392 (502)
Q Consensus 389 ~~~~ 392 (502)
.||+
T Consensus 394 ~Gy~ 397 (473)
T PRK10429 394 IGYV 397 (473)
T ss_pred cCCC
Confidence 4775
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-20 Score=183.74 Aligned_cols=373 Identities=15% Similarity=0.092 Sum_probs=237.7
Q ss_pred HHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhh----ccCchHHHHH-HHHHHHHH
Q 010733 10 LVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSA----HHNRAHVIAL-GAFLWAAA 84 (502)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~d----r~G~r~~~~~-~~~l~~~~ 84 (502)
.++...+-..+......+.++.+.+++|.++.+.+++..+..+...+.+|+.|+++| |+||||.+++ +.+..+++
T Consensus 8 ~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~ 87 (477)
T TIGR01301 8 RVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFA 87 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHH
Confidence 334444444555666666677788999999999999999999999999999999999 5999998776 46777777
Q ss_pred HHHHHhhhhHH-----------------HHHHHHHHHHhhhhhhhhHHHHHHhhccCcccc--hhHHHHHHHHHhhhHhH
Q 010733 85 TFLVAFSSTFF-----------------QVAVSRGLNGIGLAIVIPAIQSLVADSTDETNR--GMAFGWLQLTGYLGSVL 145 (502)
Q Consensus 85 ~~~~~~~~~~~-----------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~ 145 (502)
.++.+++++++ .++++-.+..++.....+...++++|.+|+++| +.+.++.+.+.++|.++
T Consensus 88 l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~il 167 (477)
T TIGR01301 88 VILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVL 167 (477)
T ss_pred HHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 77888877653 223333344557788888999999999998765 68999999999999999
Q ss_pred HHHHHHHHH--hh-c-----cCCC--cchhHHHHHHHHHHHHHHHHHHhhccC-CcccccCCCccCC--CCCCcchhhhH
Q 010733 146 GGFCSVLIA--ST-S-----FMGI--PGWRLAFHLVGLISVIVGVLVHVYAND-PRCLAKDGTKIDH--KPRRPFWADIK 212 (502)
Q Consensus 146 g~~l~~~l~--~~-~-----~~~~--~~w~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ 212 (502)
|+.+++... +. . ..+. .+.|+.|++.++..++..++..+..+| |...+++.++++. .++.......+
T Consensus 168 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (477)
T TIGR01301 168 GYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFG 247 (477)
T ss_pred HHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHH
Confidence 999998752 21 0 0000 267999999888888877777764444 3222111100010 11111112223
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHhhhhh-hhHHHhHHHHHHH--hCCChh------H----HHHHHHHHHHHHhhhhhhh
Q 010733 213 DLITDAKMVIKIPTFQIIVAQGVFGSFS-GSAFAFAAMWLEL--IGFSHK------L----TAFLMTLFVIAFCLGGLFG 279 (502)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~g~s~~------~----~~~~~~~~~~~~~~~~~~~ 279 (502)
+.++..+.+ .+.++.+....++.+.. +....|.+.|+.+ ++-++. + ..+......+...+.+++.
T Consensus 248 ~i~~~~~~m--P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l 325 (477)
T TIGR01301 248 ELFGAFKYL--PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGM 325 (477)
T ss_pred HHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443332 34555666666666664 4555676776652 433211 1 2233444555556667777
Q ss_pred HhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhc-CC--------------CCchHHHHHHHHHHHHHhhhcCCCC
Q 010733 280 GKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVL-PD--------------DPSTAFLHGLALFIMGLCMSWNAPA 344 (502)
Q Consensus 280 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (502)
.++.+|+|+|| +.+.. .-...++++....+... .. .....+...+.+...|+..+....
T Consensus 326 ~~l~~~~g~~k----~~~~~-s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~s- 399 (477)
T TIGR01301 326 EKLCRGWGAGK----RLWGI-VNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYS- 399 (477)
T ss_pred HHHHHHhccch----hHHHH-HHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHH-
Confidence 88888888543 22111 11122222222222111 00 001124445566677777777666
Q ss_pred cchhhhhhccCC--CCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhc
Q 010733 345 TNNPIFAEIVPE--RCRTSIYALDQSFESIPSSFAPAVVGILAQHVYG 390 (502)
Q Consensus 345 ~~~~~~~~~~p~--~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~ 390 (502)
..++++++..++ +..|..+|+.|.+..+...+.....|.+.+..++
T Consensus 400 iPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~ 447 (477)
T TIGR01301 400 IPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG 447 (477)
T ss_pred HhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 669999999984 4569999999999999999999999986666543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-24 Score=183.53 Aligned_cols=364 Identities=14% Similarity=0.100 Sum_probs=248.0
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhc-cCchHHHHHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAH-HNRAHVIALGAFLWA 82 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~G~r~~~~~~~~l~~ 82 (502)
|...+...|+..|-+++.....+.+..++..|.+++.++..++.+.|+....+..+++|++.|| +|-|..-++-+....
T Consensus 42 r~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~ 121 (459)
T KOG4686|consen 42 RFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVF 121 (459)
T ss_pred HHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHH
Confidence 3445666777778888888899999999999999999999999999999999999999999996 677775444444455
Q ss_pred HHHHHHH---hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhcc-
Q 010733 83 AATFLVA---FSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSF- 158 (502)
Q Consensus 83 ~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~- 158 (502)
+|.++.+ ..+++|.+..+|++.|+|.-..-++..+++.-||..||.+.++|+......+|+.+--.+.+++.+.-.
T Consensus 122 ~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~ 201 (459)
T KOG4686|consen 122 LGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR 201 (459)
T ss_pred HHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHH
Confidence 6666554 578999999999999999988889999999999999999999999999999999887777777776310
Q ss_pred -CCCcch--hHHHHHHHHHHHHHHHHHHh---hccCCc--ccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHH
Q 010733 159 -MGIPGW--RLAFHLVGLISVIVGVLVHV---YANDPR--CLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQII 230 (502)
Q Consensus 159 -~~~~~w--~~~f~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (502)
.+..+- -......+.......++... ..++.. ..+.++.... +.++..+ ..-++.|.|...
T Consensus 202 ~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~~G---e~pkLtd--------v~~f~ppfw~~~ 270 (459)
T KOG4686|consen 202 MFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGFLG---EEPKLTD--------VNTFYPPFWVLV 270 (459)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCccc---CCccccc--------ccccCccHHHHH
Confidence 000010 01111111211222111111 111111 1111111100 1111101 112233333444
Q ss_pred HHHHHhhhhhhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHH
Q 010733 231 VAQGVFGSFSGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPT 309 (502)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (502)
.++.+.....+-+....|.+++ ++|+|+..++.+.+.......+.+++.|.++||+|++-. +. ...+...+
T Consensus 271 iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~-----wv---~~a~~~tl 342 (459)
T KOG4686|consen 271 IICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW-----WV---ASACILTL 342 (459)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh-----hH---HHHHHHHH
Confidence 4444444444555667888888 699999999999999999999999999999999999831 11 11111111
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHh
Q 010733 310 AAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVY 389 (502)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~ 389 (502)
..=..+.+...++ ...+.++|........ ..+..+....|.++.|++.|..+.++++|-++.|.++|.+.|..+
T Consensus 343 ~~H~~l~Ft~lsP-----y~~m~~lGLsysllAc-slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 343 LGHSGLFFTFLSP-----YTSMTFLGLSYSLLAC-SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HHhhhHHhhhccH-----HHHHHHHhhhHHHHHH-HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 1111222222222 2345566777766665 678888999999999999999999999999999999999999876
Q ss_pred cCC
Q 010733 390 GYK 392 (502)
Q Consensus 390 ~~~ 392 (502)
+|.
T Consensus 417 ~y~ 419 (459)
T KOG4686|consen 417 SYD 419 (459)
T ss_pred chh
Confidence 665
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-20 Score=180.65 Aligned_cols=372 Identities=14% Similarity=0.086 Sum_probs=228.8
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHH-HhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhcc-CchHHHHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHH-NRAHVIALGAFLW 81 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-G~r~~~~~~~~l~ 81 (502)
+.+.+..++...+.+.+..+.....+|. +.+++|.++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++.
T Consensus 7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~ 86 (493)
T PRK15462 7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM 86 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence 3455666777777777777766666664 5677899999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhhh-hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcc--cchhHHHHHHHHHhhhHhHHHHHHHHHHhhcc
Q 010733 82 AAATFLVAFSS-TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDET--NRGMAFGWLQLTGYLGSVLGGFCSVLIASTSF 158 (502)
Q Consensus 82 ~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~ 158 (502)
+++.++++..+ +...++++..+.++|.|...+...++++|.+|++ +|.+++++...+.++|..++|.+.+++.+.
T Consensus 87 ~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~-- 164 (493)
T PRK15462 87 AIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE-- 164 (493)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 99988776543 2233444444555666777787789999999875 699999999999999999999999999987
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhh--------------------hHHHHH--
Q 010733 159 MGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWAD--------------------IKDLIT-- 216 (502)
Q Consensus 159 ~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~-- 216 (502)
.||++.|.+.++..++..+..+...+........+++.. + ++ ++.. ..+...
T Consensus 165 ---~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (493)
T PRK15462 165 ---YSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVL-R-AT-NFLLPNWGWLLVLLVATPALITVLFWKEWSVY 238 (493)
T ss_pred ---hChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCc-h-hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999766444333333222211110000000000 0 00 0000 000000
Q ss_pred ----------------Hhhhh--hhhhHHHHHHHHHHhhhhhhhHHH----hHHHHHHH------hCCChhHHHHHHHHH
Q 010733 217 ----------------DAKMV--IKIPTFQIIVAQGVFGSFSGSAFA----FAAMWLEL------IGFSHKLTAFLMTLF 268 (502)
Q Consensus 217 ----------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------~g~s~~~~~~~~~~~ 268 (502)
..+.. -.+++...++...+....+|.... -+..|.++ .|++ ...+++.+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslN 317 (493)
T PRK15462 239 ALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSIN 317 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHh
Confidence 00000 012233333333333333333322 23344432 2332 2255777888
Q ss_pred HHHHhhhhhhhHhHhhhhhhc-CCCchhHHHHHHHHHHHHHHHHHHHhh--cCC-CCchHHHHHHHHHHHHHhhhcCCCC
Q 010733 269 VIAFCLGGLFGGKMGDILAQR-LPDSGRVILSQISAASVIPTAAVLLLV--LPD-DPSTAFLHGLALFIMGLCMSWNAPA 344 (502)
Q Consensus 269 ~~~~~~~~~~~g~l~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (502)
.+..++.+++.+++-.|..+| +..............+++....+.+.. ... ...+.+.++...++.+++--...|
T Consensus 318 p~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sP- 396 (493)
T PRK15462 318 AFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDP- 396 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHCh-
Confidence 888888888888887776432 211111111212222222211111111 111 112334456777888999988888
Q ss_pred cchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 345 TNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 345 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
...+++.+..|++.+|..+|..... .+++++.+.|.+.+..
T Consensus 397 vgls~~~~laP~~~~g~~mg~w~l~---~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 397 VAMSQITRIEIPGVTGVLTGIYMLL---SGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 9999999999999999999988432 3356666666666553
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-22 Score=183.12 Aligned_cols=370 Identities=14% Similarity=0.085 Sum_probs=274.2
Q ss_pred CcchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHH
Q 010733 2 KSETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLW 81 (502)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~ 81 (502)
++||.++++.++..+.+.+....+++...+...-++ +....-|+.-+|++.+....+++-|+.|++|-|..++++..+.
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln 119 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLN 119 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHH
Confidence 468888888888889999999999998888888888 7778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh------hHH--HHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHH
Q 010733 82 AAATFLVAFSS------TFF--QVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLI 153 (502)
Q Consensus 82 ~~~~~~~~~~~------~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 153 (502)
.+|..+-..+. .++ ....+..+.+.++-.....-..+..-||+++||+.+..+-..+..+|.++|.++...+
T Consensus 120 ~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppil 199 (480)
T KOG2563|consen 120 GIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPIL 199 (480)
T ss_pred HHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcccee
Confidence 99999987763 345 6678888999888877777778899999999999999999999999999999999988
Q ss_pred Hhhc-cCCCcchhH--HHHHHHHHHHHHHHHHHh-hccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHH
Q 010733 154 ASTS-FMGIPGWRL--AFHLVGLISVIVGVLVHV-YANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQI 229 (502)
Q Consensus 154 ~~~~-~~~~~~w~~--~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (502)
..+. ......|.. .|+..+++..+..++..+ ..+.|+.++.......+ ..+..+..++.++++.|.+
T Consensus 200 V~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------~~~f~~si~~~~~n~~F~i 270 (480)
T KOG2563|consen 200 VPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------DASFPKSIKSCFKNRQFII 270 (480)
T ss_pred cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------cCcHHHHHHHHHcCccHHH
Confidence 8764 223345665 355444444444443333 33333332222111111 0235567788889999888
Q ss_pred HHHHHHhhhhhh-hHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHH
Q 010733 230 IVAQGVFGSFSG-SAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIP 308 (502)
Q Consensus 230 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 308 (502)
..+....+...+ +..+.+..-+...|++...+|+......+++++++++.|.+.||.+.-+ ......... .+.
T Consensus 271 l~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk-----~~~~v~~~~-~~v 344 (480)
T KOG2563|consen 271 LAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK-----LTTLVLYLF-ALV 344 (480)
T ss_pred HHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH-----HHHHHHHHH-HHH
Confidence 777766666533 4344444445557888889999999999999999999999999987764 121111111 111
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 309 TAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
..+.+..........+++......+|++.....| +...+..|..-|..-++..|+.+..+++.+.+-..+.+...+..
T Consensus 345 -~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~P-ig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~ 422 (480)
T KOG2563|consen 345 -GTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLP-IGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDL 422 (480)
T ss_pred -HHHHHHHhhccCCceEehhhhHHHHHHhhcCCCC-cceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhcc
Confidence 1122222333333334455667778888888887 88999999987788889999999999999999999998888775
Q ss_pred h
Q 010733 389 Y 389 (502)
Q Consensus 389 ~ 389 (502)
+
T Consensus 423 ~ 423 (480)
T KOG2563|consen 423 G 423 (480)
T ss_pred C
Confidence 4
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-19 Score=176.58 Aligned_cols=340 Identities=15% Similarity=0.185 Sum_probs=240.0
Q ss_pred chHHHHHHHHHHHHhhhhhhHhhhccCchHH-HHHHHHHHHHHHHHHHhh-h-hHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 010733 43 LGSLTLFRSIVQSFCYPLAAYLSAHHNRAHV-IALGAFLWAAATFLVAFS-S-TFFQVAVSRGLNGIGLAIVIPAIQSLV 119 (502)
Q Consensus 43 ~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~-~~~~~~l~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~~~~~~~~~~~i 119 (502)
.++..++..+..++..|+.|.++|+-|+||. +.+..++..+.+.+..+. + +++...+.-++.-++.+...+...+++
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888899999999999999999998775 555556666677777764 3 455555556666678888888999999
Q ss_pred hhccCcccc--------------------------hhHHHHHHHHHhhhHhHHHHHHHHHHhhccC---CCcchhHHHHH
Q 010733 120 ADSTDETNR--------------------------GMAFGWLQLTGYLGSVLGGFCSVLIASTSFM---GIPGWRLAFHL 170 (502)
Q Consensus 120 ~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~---~~~~w~~~f~~ 170 (502)
.+..+++++ ++..+.-.+...+|.++.-.+.-.+...... +..+-|..+.+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~ 231 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI 231 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence 999998888 9999999999999998888877665432211 12456899999
Q ss_pred HHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHHhHHH
Q 010733 171 VGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFAFAAM 249 (502)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 249 (502)
.++.-++..+..++..++++..+..++ .........++..+..+++.+.|....+++..++..- ..++......
T Consensus 232 ~a~ww~vfsiP~~~~~~~~~~~~~~~~-----~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i 306 (477)
T PF11700_consen 232 VALWWLVFSIPLFLWLPDRPGPRPLPS-----GSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGI 306 (477)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCc-----chhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888777765544332111100 0111122334555555666666776666555554443 4566677888
Q ss_pred HHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHH-HhhcCCCCchHHHH
Q 010733 250 WLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVL-LLVLPDDPSTAFLH 327 (502)
Q Consensus 250 ~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 327 (502)
|.+ ++|++..+...+.....+.+++|+++.|++.||+|.|.. +.+.........+++..+. +..........+-+
T Consensus 307 ~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~---~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f 383 (477)
T PF11700_consen 307 YATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK---RTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEF 383 (477)
T ss_pred HHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh---HHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHH
Confidence 887 799999999999999999999999999999999999831 1122212111112211111 11111111223335
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcC
Q 010733 328 GLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGY 391 (502)
Q Consensus 328 ~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~ 391 (502)
.+..++.|++.|...+ ..-++.+++.|+++.+..+|++...+...+.+||.+.|.+.+.+++.
T Consensus 384 ~~~a~~~G~~~G~~qs-~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~ 446 (477)
T PF11700_consen 384 WVLAVLIGLFMGGIQS-ASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQ 446 (477)
T ss_pred HHHHHHHHHHhhhHHH-HHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 5667788999999888 88999999999999999999999999999999999999999997443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-21 Score=190.92 Aligned_cols=342 Identities=18% Similarity=0.271 Sum_probs=251.5
Q ss_pred hhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhh----ccCchHH-HHHHHHHHHHHHHHHHhh-h-------h
Q 010733 27 GVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSA----HHNRAHV-IALGAFLWAAATFLVAFS-S-------T 93 (502)
Q Consensus 27 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~d----r~G~r~~-~~~~~~l~~~~~~~~~~~-~-------~ 93 (502)
.+.+.+.+.+|+++...|.+..+..+..++..|+.|.++| |+||||. ++++.+..+++.+++... + .
T Consensus 23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~ 102 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK 102 (428)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence 4567788888999999999999999999999999999999 8998775 667888888888888766 4 2
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhccC-cccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCC--cchhHHHHH
Q 010733 94 FFQVAVSRGLNGIGLAIVIPAIQSLVADSTD-ETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGI--PGWRLAFHL 170 (502)
Q Consensus 94 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~--~~w~~~f~~ 170 (502)
...+.+..++..++.........++..|..+ +++|.+..+.-..+..+|..+...+.+.+.+....+. .+|++..++
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v 182 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV 182 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence 3345777777899999999999999999997 5789999999999999999877777777664322121 279999999
Q ss_pred HHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhH-HHhHHH
Q 010733 171 VGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSA-FAFAAM 249 (502)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 249 (502)
.+++.++..++.++..+|++....++++ . .+..+..+.+++||.++.+....++....+.. ....+.
T Consensus 183 ~~iv~~v~~~i~~~~~ke~~~~~~~~~~-----~-------~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y 250 (428)
T PF13347_consen 183 LAIVGLVFFLITFFFVKERSVEVTEQEK-----K-------ISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPY 250 (428)
T ss_pred HHHHHHHHhhhhhheeeecccccccccc-----c-------cccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 9999888888877765551111110000 0 12234456777888888777777766665443 346777
Q ss_pred HHHH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHH
Q 010733 250 WLEL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHG 328 (502)
Q Consensus 250 ~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (502)
|.+. .|.+ ...+.+.....++.+++.++.++++||+|+|+.. ..... ...+..+.+..... .+.+.+.
T Consensus 251 ~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~-----~~~~~---~~~~~~~~~~~~~~--~~~~~~~ 319 (428)
T PF13347_consen 251 YFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVY-----IIGLL---LAALGFLLLFFLGP--GSPWLVL 319 (428)
T ss_pred HHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeeh-----hhhHH---HHHHHHHHHHHHHh--hhHHHHH
Confidence 7774 5655 5567777788899999999999999999999632 11111 11111111111211 3344456
Q ss_pred HHHHHHHHhhhcCCCCcchhhhhhccC-------CCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCCC
Q 010733 329 LALFIMGLCMSWNAPATNNPIFAEIVP-------ERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYKP 393 (502)
Q Consensus 329 ~~~~~~g~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~~ 393 (502)
+...+.|++.+.... ...++..|..+ ++..|..+|+.+....++..+++.+.|.+.+. .||+.
T Consensus 320 i~~~l~gi~~~~~~~-~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~-~Gy~~ 389 (428)
T PF13347_consen 320 ILFILAGIGYGAFFV-IPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL-VGYDA 389 (428)
T ss_pred HHHHHhHhhhccccc-ccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH-hCcCC
Confidence 777788888888877 78888888876 34468899999999999999999999999988 57764
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=186.71 Aligned_cols=350 Identities=9% Similarity=0.033 Sum_probs=212.4
Q ss_pred HHHHHHHHhhccc-hhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhcc----CchHH-HHHHHHHHHHHHH
Q 010733 13 FAAIMERADESML-PGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHH----NRAHV-IALGAFLWAAATF 86 (502)
Q Consensus 13 ~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~----G~r~~-~~~~~~l~~~~~~ 86 (502)
++.+......... ..+.+++.+.+|+++.++|.+.+...+..++..++.|+++||. ||||. +..+.+...+..+
T Consensus 15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~ 94 (448)
T PRK09848 15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV 94 (448)
T ss_pred cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence 3443444444333 3344677888899999999999999999999999999999996 77775 4556555554444
Q ss_pred HHH-h----hh--hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccC-cccchhHHHHHHHHHh-----hhHhHHHHHHHHH
Q 010733 87 LVA-F----SS--TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTD-ETNRGMAFGWLQLTGY-----LGSVLGGFCSVLI 153 (502)
Q Consensus 87 ~~~-~----~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~-----~G~~~g~~l~~~l 153 (502)
+.. . .+ ..+.+++..++.+++.+...++..++..+..+ +++|.+..++-..+.+ ++..++|.++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 95 LVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred HHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 432 1 11 22334555677788888888877787777664 4678887776655434 4445555554432
Q ss_pred HhhccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHH
Q 010733 154 ASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQ 233 (502)
Q Consensus 154 ~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (502)
... ...+|.....+.++++++..++.+...+|+...+ . ++ ......++.++++|.++.....
T Consensus 175 g~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~----~-----~~------~~~~~~~~~l~~n~~f~~~~~~ 236 (448)
T PRK09848 175 PEE---MVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRI----V-----AQ------PSLKISLQTLKRNRPLFMLCIG 236 (448)
T ss_pred CCc---hhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCC----c-----cC------CCHHHHHHHHhCCchHHHHHHH
Confidence 110 0012222222333333333333333222221100 0 00 1122345678889998877766
Q ss_pred HHhhhhhh-hHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHH
Q 010733 234 GVFGSFSG-SAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAA 311 (502)
Q Consensus 234 ~~~~~~~~-~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (502)
.++....+ ......|.|++ .+|.++...++......++.+++.++.+++.||+++|+ .+.... .+. .+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~-----~~~~g~--~~~-~i~~ 308 (448)
T PRK09848 237 ALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKN-----TFLIGA--LLG-TCGY 308 (448)
T ss_pred HHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----HHHHHH--HHH-HHHH
Confidence 66555543 33345677777 47877766665555556778889999999999999884 222211 111 1111
Q ss_pred HHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCC-------CchhhHhHHHhhhhhhhchhHHHHHHH
Q 010733 312 VLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPER-------CRTSIYALDQSFESIPSSFAPAVVGIL 384 (502)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~~~~i~~~~~g~l 384 (502)
+.+. +.... ..+......++.|++.+...+ ...++..|..|.+ ..|..+|+.+....+|..+++.+.|.+
T Consensus 309 ~~~~-~~~~~-~~~~~~~~~~l~g~G~~~~~~-~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 309 LLFF-WVSVW-SLPVALVALAIASIGQGVTMT-VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHH-HcCch-hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 22222 233344455667777777776 6777888877643 458999999999999999999999999
Q ss_pred HHHHhcCC
Q 010733 385 AQHVYGYK 392 (502)
Q Consensus 385 ~~~~~~~~ 392 (502)
.+. .||+
T Consensus 386 l~~-~G~~ 392 (448)
T PRK09848 386 LGL-SGYI 392 (448)
T ss_pred HHH-cCCC
Confidence 987 4775
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-19 Score=180.17 Aligned_cols=340 Identities=11% Similarity=0.131 Sum_probs=223.6
Q ss_pred hhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhc----cCchHH-HHHHHHHHHHHHHHHHhhhh------HH
Q 010733 27 GVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAH----HNRAHV-IALGAFLWAAATFLVAFSST------FF 95 (502)
Q Consensus 27 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~G~r~~-~~~~~~l~~~~~~~~~~~~~------~~ 95 (502)
.+...+.+..|+++..+|.+..+.-+--++.-|+.|+++|| +||||. ++++.+..+++.+++...++ +.
T Consensus 31 ~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~ 110 (460)
T PRK11462 31 YMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMI 110 (460)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence 34556778889999999999999999999999999999996 798765 66777888888777665542 44
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhccC-cccchhHHHHHHHHHhhhHhHHHHHHHHHHhhcc--CCCcchhHHHHHHH
Q 010733 96 QVAVSRGLNGIGLAIVIPAIQSLVADSTD-ETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSF--MGIPGWRLAFHLVG 172 (502)
Q Consensus 96 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~--~~~~~w~~~f~~~~ 172 (502)
.+++.-++..++.......-.++..|..+ ++||.+..++...+..+|..+++.+...+.+... ....+|+....+.+
T Consensus 111 y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ 190 (460)
T PRK11462 111 YAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLS 190 (460)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence 56666777788888888899999999986 6889999999999999999888888766554311 11247888888888
Q ss_pred HHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhHH-HhHHHHH
Q 010733 173 LISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAF-AFAAMWL 251 (502)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 251 (502)
++.+++..+.+...+|++..+ . ++. ...+..+..++|+.++.+....++........ .....|.
T Consensus 191 ii~~i~~~i~~~~~kE~~~~~----~-----~~~------~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~ 255 (460)
T PRK11462 191 VVAFMMLAFCFFTTKERVEAP----P-----TTT------SMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYV 255 (460)
T ss_pred HHHHHHHHHHHhcceeccCCC----c-----cCC------CHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhh
Confidence 877777666555443321110 0 000 12234566778888877665554444432222 2333344
Q ss_pred HHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 010733 252 ELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLAL 331 (502)
Q Consensus 252 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (502)
+...-++...+.+.....++.+++.++++++.||+++|+ ....... . .......+...+ ..+... ..+..
T Consensus 256 ~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~-----~~~~~~~-~--~~~~~~~~~~~~-~~~~~~-~~~~~ 325 (460)
T PRK11462 256 TWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVT-----IFWWTNA-L--LAVISLAMFFVP-MQASIT-MFVFI 325 (460)
T ss_pred hhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-----HHHHHHH-H--HHHHHHHHHHhc-hhHHHH-HHHHH
Confidence 432223334456667778888999999999999998874 2211111 1 111111222222 222222 22334
Q ss_pred HHHHHhhhcCCCCcchhhhhhccC-------CCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCCC
Q 010733 332 FIMGLCMSWNAPATNNPIFAEIVP-------ERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYKP 393 (502)
Q Consensus 332 ~~~g~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~~ 393 (502)
++.|++.+...+ ..+++..|..+ .+..|...+.......++.++++.+.|.+.+. .||..
T Consensus 326 ~l~g~~~~~~~~-l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~-~Gy~~ 392 (460)
T PRK11462 326 FVIGVLHQLVTP-IQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY-GGYDA 392 (460)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC
Confidence 445666555554 55667777655 33345556777789999999999999999998 47763
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.8e-20 Score=171.55 Aligned_cols=356 Identities=11% Similarity=0.117 Sum_probs=234.0
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhh-hccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHH-
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGA-ALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLW- 81 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~- 81 (502)
+++..+.....++..++..+..-+..+...+ +.|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++....+.
T Consensus 5 ~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~ 84 (412)
T PF01306_consen 5 KNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILL 84 (412)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHH
Confidence 4456677777788888888888888877665 48999999999999999999999999999999999777544333222
Q ss_pred -HHHH-HHHHhh----hhHH-HHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHH
Q 010733 82 -AAAT-FLVAFS----STFF-QVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIA 154 (502)
Q Consensus 82 -~~~~-~~~~~~----~~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 154 (502)
..+. ....+. .|++ ..+++-+..|+......|...+++.++. ++.+.-.|-.-+..++|.+++..++|.+.
T Consensus 85 ~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~ 162 (412)
T PF01306_consen 85 LLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILF 162 (412)
T ss_dssp HTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheee
Confidence 2222 222222 2332 3344445556666677778888877764 44566678888899999999999999998
Q ss_pred hhccCCCcchhHHHHHHHHHHHHHHHHHHhhccC-CcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHH
Q 010733 155 STSFMGIPGWRLAFHLVGLISVIVGVLVHVYAND-PRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQ 233 (502)
Q Consensus 155 ~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (502)
+ .+-+..||+....+++..++.+...++ ++....++.. +. + +.+...++..+++|+|.+|.+.+.
T Consensus 163 ~------i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~-~~---~----~~~~~~~~~~~l~k~~~fw~~~l~ 228 (412)
T PF01306_consen 163 N------INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADAL-GA---K----KDKVSLKDVLSLFKMRNFWFFVLF 228 (412)
T ss_dssp H------HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTS-SS-------------HHHHHHHTTSHHHHHHHHH
T ss_pred e------eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccc-cc---C----CCCCcHHHHHHHhcchhHHHHHHH
Confidence 7 466788888777666665555443322 2211111110 00 0 012234667788999999987776
Q ss_pred HHhhhhhhhHH-HhHHHHHHHh----CCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHH
Q 010733 234 GVFGSFSGSAF-AFAAMWLELI----GFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIP 308 (502)
Q Consensus 234 ~~~~~~~~~~~-~~~~~~~~~~----g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 308 (502)
.......|... ...+.|.+.+ +.+....|++.+..-+..++...+..++.+|+|.|+ .+ .++..
T Consensus 229 v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~-----~L------llag~ 297 (412)
T PF01306_consen 229 VIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKN-----LL------LLAGV 297 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----HH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHh-----HH------HHHHH
Confidence 66655555443 4567777653 344566788888888999999999999999999995 11 11111
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHH-HhhhhhhhchhHHHHHHHHHH
Q 010733 309 TAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALD-QSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~~~~i~~~~~g~l~~~ 387 (502)
...+=.......++.+ .+...-.+-++....... ...-++.+.+|++..++...+. +...+++..+.+.+.|.+.|+
T Consensus 298 i~~iRi~~~~~~~~~~-~i~~~klLH~~e~~l~lv-a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~ 375 (412)
T PF01306_consen 298 IMAIRIIGSGFATNPW-VISLIKLLHALEFPLLLV-AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR 375 (412)
T ss_dssp HHHHHHHHHHT--SHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcchH-HHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh
Confidence 1122122222223333 355566677777766666 6688999999999988998885 577789999999999999999
Q ss_pred H
Q 010733 388 V 388 (502)
Q Consensus 388 ~ 388 (502)
.
T Consensus 376 ~ 376 (412)
T PF01306_consen 376 I 376 (412)
T ss_dssp H
T ss_pred c
Confidence 6
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-20 Score=184.94 Aligned_cols=426 Identities=16% Similarity=0.194 Sum_probs=303.6
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAAT 85 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~ 85 (502)
..+.++++..+...+....+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|.-|-|.+-+|.+++++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 34566777778888777888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh-------------------h--------------------------------HH-HHHHHHHHHHhhhhhhhh
Q 010733 86 FLVAFSS-------------------T--------------------------------FF-QVAVSRGLNGIGLAIVIP 113 (502)
Q Consensus 86 ~~~~~~~-------------------~--------------------------------~~-~l~~~r~l~G~~~~~~~~ 113 (502)
+++++-+ + ++ .++++.++.|+|....++
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 9987630 0 22 567789999999999999
Q ss_pred HHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCC--------------CcchhHHHHHHHHHHHHHH
Q 010733 114 AIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMG--------------IPGWRLAFHLVGLISVIVG 179 (502)
Q Consensus 114 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~--------------~~~w~~~f~~~~~~~~~~~ 179 (502)
...+|+-|...+++-+..+|+......+|.++|.++++++.....+- ...|..-|++.+.+.++.+
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987632111 1247788888999999999
Q ss_pred HHHHhhccCCcccccC-------CCccCC---CCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhhh-hHHHhHH
Q 010733 180 VLVHVYANDPRCLAKD-------GTKIDH---KPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSG-SAFAFAA 248 (502)
Q Consensus 180 ~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 248 (502)
+..+++|++.+...++ ..+++. +......+++++..+..+++++||.+...++...+....+ +..+|+|
T Consensus 337 ~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlP 416 (735)
T KOG3626|consen 337 VPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLP 416 (735)
T ss_pred HHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhH
Confidence 9999999875543210 011111 1122333466788889999999999999888888777754 6668999
Q ss_pred HHHH-HhCCChhHHHHHHHHHHHH-HhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHH-HHHHHhhcCC------
Q 010733 249 MWLE-LIGFSHKLTAFLMTLFVIA-FCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPT-AAVLLLVLPD------ 319 (502)
Q Consensus 249 ~~~~-~~g~s~~~~~~~~~~~~~~-~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------ 319 (502)
.|++ ++|.++..+..+.....+. ..+|.+++|++.+|+..+.... .........+.+.. ....++....
T Consensus 417 KyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~--a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~ 494 (735)
T KOG3626|consen 417 KYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGA--AKFVIVCSVLSLLFYSLLFFIGCESSPVAGV 494 (735)
T ss_pred HHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHH--HHHHHHHHHHHHHHHHHHHEecCCCCcccce
Confidence 9999 7999999999999777765 4578888999999886553211 11111111111111 1111100000
Q ss_pred -------------C------------------------------------------------------------------
Q 010733 320 -------------D------------------------------------------------------------------ 320 (502)
Q Consensus 320 -------------~------------------------------------------------------------------ 320 (502)
.
T Consensus 495 ~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~ 574 (735)
T KOG3626|consen 495 TNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAK 574 (735)
T ss_pred ecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceee
Confidence 0
Q ss_pred --------CchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhh-hhchhHHHHHHHHHHH---
Q 010733 321 --------PSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESI-PSSFAPAVVGILAQHV--- 388 (502)
Q Consensus 321 --------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~i~~~~~g~l~~~~--- 388 (502)
......+++.+++..+..+...+ ..+.++.+.+|+++|..++|+..++.++ |.+-+|.+.|+++|..
T Consensus 575 ~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~-p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~tCl~ 653 (735)
T KOG3626|consen 575 KGYCPNDCCRQFLIFLALFAIGSFIGALGAV-PGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDTTCLL 653 (735)
T ss_pred cCCCCCCcchhhHHHHHHHHHHHHHHHhccC-cceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhhHHHH
Confidence 00011122333333333333334 5677888999999999999999988765 5566899999999974
Q ss_pred hcCCCCCCCCCCcchhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010733 389 YGYKPIPQDASNSVEIETDRENAASLAKAIYAAMSIPMAICCIIYSFLYCSYP 441 (502)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (502)
++..-.. .=.+..++.+.+++.+..+..+...+.++.+++.+..++
T Consensus 654 W~~~C~~-------~GsC~iYd~~~lr~~y~gl~~~~~~~~~i~~i~~~~v~r 699 (735)
T KOG3626|consen 654 WGKSCGS-------RGSCLIYDNDSLRYRYLGLHIILKVIALILLIIDLYVWR 699 (735)
T ss_pred hhcccCC-------CCceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2211100 013456777888886555555555555555554444444
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-19 Score=167.42 Aligned_cols=344 Identities=15% Similarity=0.199 Sum_probs=255.2
Q ss_pred hHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhc----cCchH-HHHHHHHHHHHHHHHHHhhhh------HHH
Q 010733 28 VYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAH----HNRAH-VIALGAFLWAAATFLVAFSST------FFQ 96 (502)
Q Consensus 28 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~G~r~-~~~~~~~l~~~~~~~~~~~~~------~~~ 96 (502)
++-.+.+.+|+++..+|.+..+.-+--++.-|+.|.+.|| +||+| -++.+.+-.++.+.++-.+++ ...
T Consensus 35 Ll~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~y 114 (467)
T COG2211 35 LLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIY 114 (467)
T ss_pred HHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHH
Confidence 3445777789999999999999999999999999999995 78866 588888999999999888773 445
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhccC-cccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCC--CcchhHHHHHHHH
Q 010733 97 VAVSRGLNGIGLAIVIPAIQSLVADSTD-ETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMG--IPGWRLAFHLVGL 173 (502)
Q Consensus 97 l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~--~~~w~~~f~~~~~ 173 (502)
.++.-.+.+++......+-.++.++..+ ++||.+..++-+.+.++|..+...+...+......+ ..||+..-.+.++
T Consensus 115 a~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~v 194 (467)
T COG2211 115 ALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGV 194 (467)
T ss_pred HHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHH
Confidence 6677888999999888888999999984 688999999999999999888888877776543222 4689999999999
Q ss_pred HHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhHH-HhHHHHHH
Q 010733 174 ISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAF-AFAAMWLE 252 (502)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 252 (502)
++.+..+.+++-.+|+..+..+.+. ... ++..++....++|+.+...+...++....+... +....|.+
T Consensus 195 i~~i~~l~~~~~v~ER~~~~~~~~~-------~~~---~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~ 264 (467)
T COG2211 195 IGVILLLFCFFNVKERVVETQPTKT-------GVK---LKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVT 264 (467)
T ss_pred HHHHHHHHHHHHhhcccCccccCcc-------ccc---ccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEE
Confidence 9888888888865554332111110 000 222334456778999988877776666654443 45566666
Q ss_pred -HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 010733 253 -LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLAL 331 (502)
Q Consensus 253 -~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (502)
..|.+.............+.+++.++..++.+|+|+|+ +.... .....+....+...+ .++....++..
T Consensus 265 y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~-----~~~~~---~~~~~i~~~~~~f~~--~~~~~l~~~~~ 334 (467)
T COG2211 265 YVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKK-----LFLIG---LLLLAVGYLLLYFTP--AGSVVLIVVAL 334 (467)
T ss_pred EEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHH-----HHHHH---HHHHHHHHHHHHhhc--CcchHHHHHHH
Confidence 57888888888888888888888999999999999995 22222 111222222222233 33344455566
Q ss_pred HHHHHhhhcCCCCcchhhhhhccC-------CCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCCC
Q 010733 332 FIMGLCMSWNAPATNNPIFAEIVP-------ERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYKP 393 (502)
Q Consensus 332 ~~~g~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~~ 393 (502)
++.+++.+...+ ..+++++|..+ .+..|...|....+.-+|.+++..+.|++.+. .||.+
T Consensus 335 ~i~~~g~~~~~~-l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~-~Gyv~ 401 (467)
T COG2211 335 IIAGVGTGIANP-LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA-IGYVP 401 (467)
T ss_pred HHHHHHhhcccc-ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC
Confidence 777788888877 78999887653 34457889999999999999999999999999 58875
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-19 Score=165.16 Aligned_cols=272 Identities=12% Similarity=0.051 Sum_probs=190.4
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccC---------
Q 010733 89 AFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFM--------- 159 (502)
Q Consensus 89 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~--------- 159 (502)
+..++|+.++++-++.|.|.+...+..+.++++..++|++++.+++.+..+++|..++|.+++.+......
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 35678999999999999999999999999999999999999999999999999999999999988743110
Q ss_pred --CCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhh
Q 010733 160 --GIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFG 237 (502)
Q Consensus 160 --~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (502)
...+|+++|++.+.+.++..++..+.+ -|+.++++++ +.. .++. .+.++.+++|.++...+..++.
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~-~p~~~~~~~~--~~~-~~~~--------~~~~~~~~~~~~~l~~~~~f~y 152 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLP-LPELQEADVA--RVS-SGDT--------TQKTSAFQFTHLVLGALGIFVY 152 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCccccc--ccc-cccc--------cchhhHHhhHHHHHHHHHHHHH
Confidence 014799999987777666665544432 1111111110 000 0000 0112345566777666666655
Q ss_pred hh-hhhHHHhHHHHHHH---hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHH
Q 010733 238 SF-SGSAFAFAAMWLEL---IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVL 313 (502)
Q Consensus 238 ~~-~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
.. ..+...|.+.|+++ +|+++.+++...+.+..+.++|+++++++.||+++|+ ..... ..+..... .+
T Consensus 153 vg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~-----~l~~~--~~l~~~~~-~l 224 (310)
T TIGR01272 153 VGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR-----YLAFN--AFLAVLLS-IG 224 (310)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-----HHHHH--HHHHHHHH-HH
Confidence 54 34666799999974 5999999999999999999999999999999999884 22111 11111111 11
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 314 LLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
.. ... ... ....+++.|++.+...| ...+...+..|+ +.+++.++. ..+.+|+.+.|++.|.+.|..
T Consensus 225 ~~-~~~--~~~--~~~~~~l~g~~~s~i~P-~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~ 291 (310)
T TIGR01272 225 AA-LTH--GYV--AMWFVLALGLFNSIMFP-TIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCL 291 (310)
T ss_pred HH-HcC--CHH--HHHHHHHHHHHHHHHHH-HHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhc
Confidence 11 111 111 12345578888888888 667778787774 366777775 577899999999999999974
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.4e-17 Score=148.29 Aligned_cols=329 Identities=15% Similarity=0.176 Sum_probs=239.5
Q ss_pred cchHHHHHHHHHHHHhhhhhhHhhhccCchHH-HHHHHHHHHHHHHHHHhhhh--H-HHHHHHHHHHHhhhhhhhhHHHH
Q 010733 42 GLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHV-IALGAFLWAAATFLVAFSST--F-FQVAVSRGLNGIGLAIVIPAIQS 117 (502)
Q Consensus 42 ~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~-~~~~~~l~~~~~~~~~~~~~--~-~~l~~~r~l~G~~~~~~~~~~~~ 117 (502)
..|...++..+..++.+|+.|.++|+.|+||. +-....+..+...+..++++ + +..++.-.+..++..+..+...+
T Consensus 59 ~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds 138 (438)
T COG2270 59 YWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS 138 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh
Confidence 45778888899999999999999999998775 55555566666666677664 4 44566678888998999999999
Q ss_pred HHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhh-------------ccCCCcchhHHHHHHHHHHHHHHHHHHh
Q 010733 118 LVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST-------------SFMGIPGWRLAFHLVGLISVIVGVLVHV 184 (502)
Q Consensus 118 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-------------~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 184 (502)
++.+..++++-++..++-.....+|+++.-++....... +..+...-|..+.+.++-.++..+..++
T Consensus 139 ~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~ 218 (438)
T COG2270 139 MLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMIL 218 (438)
T ss_pred HhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHh
Confidence 999999998888888888888888877766554222110 0112246788899988888888887777
Q ss_pred hccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHHhHHHHHH-HhCCChhHHH
Q 010733 185 YANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFAFAAMWLE-LIGFSHKLTA 262 (502)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~s~~~~~ 262 (502)
..+++..... .....-.+..++.....++..+++.+..+++..++..- ..+.......|-. ++|++..+..
T Consensus 219 ~v~~~~~~~~-------~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~ll 291 (438)
T COG2270 219 NVHDAEKISS-------PPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELL 291 (438)
T ss_pred cccccccccc-------cchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHH
Confidence 6655543210 11122233446666677777777777666555544443 5566778888888 8999999999
Q ss_pred HHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCC
Q 010733 263 FLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNA 342 (502)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 342 (502)
++.....+.+++|+++.|++.||++.|+.. ...+..... ..+... +... ...+.++.++.|++.|...
T Consensus 292 l~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl-----~~~lvi~~~---~~~~~~-~~~~---~~~f~i~gll~g~s~G~~q 359 (438)
T COG2270 292 LIGIALSVVAALGAIIAGFLDERFGSKPVL-----MIGLVILSI---AALYLI-FLEG---ELDFWILGLLVGTSLGGAQ 359 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCceee-----hHHHHHHHH---HHHHHH-Hccc---cHHHHHHHHHHHHhcchHH
Confidence 999999999999999999999999999532 221111111 111111 1111 1224455567888888888
Q ss_pred CCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhc
Q 010733 343 PATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYG 390 (502)
Q Consensus 343 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~ 390 (502)
. ..-++..+.+|+++.++.+|+++..+...+.++|.+.+.+.+.++.
T Consensus 360 A-~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~ 406 (438)
T COG2270 360 A-SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS 406 (438)
T ss_pred H-HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 7 8899999999999999999999999999999999999999998744
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-21 Score=190.40 Aligned_cols=378 Identities=17% Similarity=0.261 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFL 87 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~ 87 (502)
++.+++..+............+..+++.|+++.++.|++.+.+-++..+..++..++.+|-.|-|.+-+|.++.++++++
T Consensus 5 l~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l 84 (539)
T PF03137_consen 5 LVFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLL 84 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHH
Confidence 44555566666667777888889999999999999999999999999999999999999988888999999999999998
Q ss_pred HHhhh--------------------------------------------------hHHHHHHHHHHHHhhhhhhhhHHHH
Q 010733 88 VAFSS--------------------------------------------------TFFQVAVSRGLNGIGLAIVIPAIQS 117 (502)
Q Consensus 88 ~~~~~--------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~ 117 (502)
+++=+ -+..++++.++.|+|.+..++...+
T Consensus 85 ~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t 164 (539)
T PF03137_consen 85 FALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT 164 (539)
T ss_dssp -------------------------------------------------------------------SSS----------
T ss_pred HhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence 76510 0245688999999999999999999
Q ss_pred HHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhc----cCC---------C----cchhHHHHHHHHHHHHHHH
Q 010733 118 LVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTS----FMG---------I----PGWRLAFHLVGLISVIVGV 180 (502)
Q Consensus 118 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~----~~~---------~----~~w~~~f~~~~~~~~~~~~ 180 (502)
|+-|..++++-+..+|+..+...+|.++|.++++.+.+.. ..+ + ..|..-|++.+++.++.++
T Consensus 165 YiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ai 244 (539)
T PF03137_consen 165 YIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAI 244 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877531 000 1 2477778888888888888
Q ss_pred HHHhhccCCccccc-C------CCccC----CCCCC-----cchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhh-hhH
Q 010733 181 LVHVYANDPRCLAK-D------GTKID----HKPRR-----PFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFS-GSA 243 (502)
Q Consensus 181 ~~~~~~~~~~~~~~-~------~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 243 (502)
..+.+|++-+...+ + +++++ ++..+ ..++..++..+..+++++||.+....+........ .+.
T Consensus 245 pl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~ 324 (539)
T PF03137_consen 245 PLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGF 324 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 88888876333310 0 00000 00000 11234577778889999999999888877776664 466
Q ss_pred HHhHHHHHH-HhCCChhHHHHHHHHHHH-HHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHH-HHHHHhhcC--
Q 010733 244 FAFAAMWLE-LIGFSHKLTAFLMTLFVI-AFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPT-AAVLLLVLP-- 318 (502)
Q Consensus 244 ~~~~~~~~~-~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 318 (502)
.+|+|.|++ +++.++.+++++.....+ ++++|.+++|++.+|++.+.... .........+.+.+ ....+...+
T Consensus 325 ~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~--~~~~~v~~~v~~~~~~~~~~~~C~~~ 402 (539)
T PF03137_consen 325 ATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGA--AKFCIVVSIVSVILYSPLFFLGCPNP 402 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHH--HHHHHHHHHHHHHHHHHHHeecCCCC
Confidence 689999999 799999999998877665 56688899999999986553221 11111111111111 111111000
Q ss_pred --------C----------------------------------C-CchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccC
Q 010733 319 --------D----------------------------------D-PSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVP 355 (502)
Q Consensus 319 --------~----------------------------------~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p 355 (502)
. . ......+.+.+++..+..+.... .......+.+|
T Consensus 403 ~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~-p~~~i~LR~V~ 481 (539)
T PF03137_consen 403 PIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQV-PSTLITLRCVP 481 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhccc-chheeeeccCC
Confidence 0 0 00112232333333333344444 35566778899
Q ss_pred CCCchhhHhHHHhhhhh-hhchhHHHHHHHHHHH
Q 010733 356 ERCRTSIYALDQSFESI-PSSFAPAVVGILAQHV 388 (502)
Q Consensus 356 ~~~~~~~~g~~~~~~~~-~~~i~~~~~g~l~~~~ 388 (502)
+++|+.+.|+...+.++ |.+-+|.+.|.+.|..
T Consensus 482 ~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 482 PEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ----------------------------------
T ss_pred hhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 99999999999988765 5577999999999985
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-15 Score=140.33 Aligned_cols=333 Identities=16% Similarity=0.128 Sum_probs=222.0
Q ss_pred HHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccC-----chHH-HHHHHHHHHHHHHHHHhh-----h-------
Q 010733 31 EVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHN-----RAHV-IALGAFLWAAATFLVAFS-----S------- 92 (502)
Q Consensus 31 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G-----~r~~-~~~~~~l~~~~~~~~~~~-----~------- 92 (502)
.+..|++++..-.+.+.+...+.. ...+.+|+.+|+.+ ||.. +..|.++...+..+.+++ .
T Consensus 5 VMIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 5 VMIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 467789999988898888887764 46899999999988 7765 556667766666665543 2
Q ss_pred hH--H--HHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhH--
Q 010733 93 TF--F--QVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRL-- 166 (502)
Q Consensus 93 ~~--~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~-- 166 (502)
+. + ...+.-.+.|+|.+...++..+++.|..|+++|+++.++...+.-+|.+++..+.+.+.+. ++-.-
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~-----~s~~rL~ 158 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP-----FSPERLI 158 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc-----cCHHHHH
Confidence 12 2 2345677889999999999999999999999999999999999999999999999988875 33222
Q ss_pred -HHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhHH-
Q 010733 167 -AFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAF- 244 (502)
Q Consensus 167 -~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 244 (502)
++...+++.++..++..+-. |++..+..... ++++.. .+ ..++++..+|....++...+.....+...
T Consensus 159 ~v~~~~a~i~~~l~~ia~wg~-E~r~~~~~~~~---~~~~~~---f~---~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD 228 (403)
T PF03209_consen 159 QVIQGVALIALLLNLIALWGQ-EPRRSRRAAAA---ERPRPP---FR---EAWRQVWASPQARRFFVFLFLGTLAFFMQD 228 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-ccCCcccccCC---CCCCcc---HH---HHHHHHHhCCChhHHHHHHHHHHHHHHhhH
Confidence 22222333333333332222 23222222111 111111 12 22333445555554444444444433222
Q ss_pred HhHHHH-HHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhh-hhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 010733 245 AFAAMW-LELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDI-LAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPS 322 (502)
Q Consensus 245 ~~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (502)
..+=.| -+.+|++..+...+....+.+.+++..+.|++..| .+++ +.. ...+......+..+.+.... .
T Consensus 229 ~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~-----~~a-~~G~~~~~~~f~lii~a~~~---~ 299 (403)
T PF03209_consen 229 VILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK-----RTA-ALGCLLGALAFALIILAGPL---G 299 (403)
T ss_pred HHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-----HHH-HHHHHHHHHHHHHHHHHHhc---c
Confidence 222222 24589999999999999999999999999988774 3333 221 12222222222222222221 2
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHh
Q 010733 323 TAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVY 389 (502)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~ 389 (502)
+.+.+-...+++|++.|.... ...+.+.+..++++.|..+|.....+.+...++..++|.+.|...
T Consensus 300 ~~~~~~~~~~l~G~g~G~f~v-gals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~ 365 (403)
T PF03209_consen 300 SPWLFRPGVFLLGLGNGLFTV-GALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR 365 (403)
T ss_pred cchHHHHHHHHHHHhhhHHHH-HHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244466778889999998888 778888899989999999999999999999999999999999853
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=152.62 Aligned_cols=375 Identities=12% Similarity=0.105 Sum_probs=228.2
Q ss_pred CcchHHHHHHHHHHHHHHHhhccchhhHHHHhhh--ccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCc-hHHHHHHH
Q 010733 2 KSETLTLVLVNFAAIMERADESMLPGVYKEVGAA--LHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNR-AHVIALGA 78 (502)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~-r~~~~~~~ 78 (502)
+.+|+.+.+..+..++.....+++.+..-.+.++ .+.+.+..|++.++..++.+++++..|++..|.+. |+.++.|.
T Consensus 30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ 109 (488)
T KOG2325|consen 30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF 109 (488)
T ss_pred CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence 4578999999999999999998877665444455 77788889999999999999999999999999997 88899999
Q ss_pred HHHHHHHHHH-Hhh---h-hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHH
Q 010733 79 FLWAAATFLV-AFS---S-TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLI 153 (502)
Q Consensus 79 ~l~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 153 (502)
++..++.++. ++. + ..+.++++|++.|+|.+ .....-+|+++....++|.|+++....+..+|.++||.+...+
T Consensus 110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence 9999999988 332 2 67889999999999976 4567779999988889999999999999999999999998877
Q ss_pred HhhccCC--------CcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhh
Q 010733 154 ASTSFMG--------IPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIP 225 (502)
Q Consensus 154 ~~~~~~~--------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (502)
......+ ..-...+-|+.+++.++..++.++..+|+.....+++.+++++++...++.+...-+ ..
T Consensus 189 ~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~~ 262 (488)
T KOG2325|consen 189 TPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEEKSDIEKVKKPKLD------WV 262 (488)
T ss_pred hhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhhccchhhhccCChh------HH
Confidence 6532111 011335667777777777777777555544333222111111011111000110000 01
Q ss_pred HHHHHHHHHHhhhh-hhhHHHh-HHHHHHHhCCChhHHHH----HHHHHHHHHhhhhhhhHhHh-hhhhhcCCCchhHHH
Q 010733 226 TFQIIVAQGVFGSF-SGSAFAF-AAMWLELIGFSHKLTAF----LMTLFVIAFCLGGLFGGKMG-DILAQRLPDSGRVIL 298 (502)
Q Consensus 226 ~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~g~s~~~~~~----~~~~~~~~~~~~~~~~g~l~-d~~~~~~~~~~~~~~ 298 (502)
..+.++...+.... .....+. -+.....++++..++-. +.+..++..+...+...+.. .++.+|+. ..
T Consensus 263 ~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~-----~~ 337 (488)
T KOG2325|consen 263 AVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRI-----IL 337 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhcccee-----ee
Confidence 11122222222222 2232333 33444456776555433 33333333333222222222 12222321 11
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC---------------------------chHHHHHHHHHHHHHhhhcCCCCcchhhhh
Q 010733 299 SQISAASVIPTAAVLLLVLPDDP---------------------------STAFLHGLALFIMGLCMSWNAPATNNPIFA 351 (502)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 351 (502)
... ........+....+.... +.+..+....+++|.+.-.... ...++-+
T Consensus 338 ~g~--l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~-~~~tlyS 414 (488)
T KOG2325|consen 338 LGF--LIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFIST-ALDTLYS 414 (488)
T ss_pred ehH--HHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccc-hHHHHHH
Confidence 110 111111111111010000 0111122233444555554455 5678889
Q ss_pred hccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 352 EIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 352 ~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
+...|+++++..|++......+..++|.+...+... .|+.
T Consensus 415 kiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~-~g~~ 454 (488)
T KOG2325|consen 415 KILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL-SGPR 454 (488)
T ss_pred HHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh-cCcc
Confidence 999999999999999999999999999888777776 3554
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-15 Score=143.21 Aligned_cols=370 Identities=15% Similarity=0.127 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHHHHHhhccch-hhHHHHhhhcc----CCCccchHHHHHHHHHHHHhhhhhhHhhhc-cCchHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLP-GVYKEVGAALH----TDPTGLGSLTLFRSIVQSFCYPLAAYLSAH-HNRAHVIALGAF 79 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~----~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~G~r~~~~~~~~ 79 (502)
+-+..++..-+.+.++.+-.. .+.-++..+++ .++++..-+.+.|.--.-+...++|+++|| +|+|+++++|.+
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai 100 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI 100 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 456677777888877776544 44556777777 999998888888888888889999999999 599999999999
Q ss_pred HHHHHHHHHHhhh--hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcc--cchhHHHHHHHHHhhhHhHHHHHHHHHHh
Q 010733 80 LWAAATFLVAFSS--TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDET--NRGMAFGWLQLTGYLGSVLGGFCSVLIAS 155 (502)
Q Consensus 80 l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~l~~ 155 (502)
+.++|.++.+... +...++++-++.++|.|..-+...++++|.+|++ +|-..++++.++.++|+.++|++.+++.+
T Consensus 101 l~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~ 180 (498)
T COG3104 101 LMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI 180 (498)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence 9999999999984 7889999999999999999999999999999875 37778999999999999999999999999
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCC-CC-CCcch------------------hhhH---
Q 010733 156 TSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDH-KP-RRPFW------------------ADIK--- 212 (502)
Q Consensus 156 ~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~------------------~~~~--- 212 (502)
+ +||+..|.+.++-..+..+..+..++.-......++.... .. ....+ +...
T Consensus 181 ~-----~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 255 (498)
T COG3104 181 N-----YGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVL 255 (498)
T ss_pred h-----hCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 9999999998887776666665554322111111110000 00 00000 0000
Q ss_pred -------------HHHHHhhhhhhhhHHHHHHHHHHhhhhhhhHH----HhHHHHHHH------hCCChhHHHHHHHHHH
Q 010733 213 -------------DLITDAKMVIKIPTFQIIVAQGVFGSFSGSAF----AFAAMWLEL------IGFSHKLTAFLMTLFV 269 (502)
Q Consensus 213 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------~g~s~~~~~~~~~~~~ 269 (502)
+..+..+.--.+++.+..+..++....+|... +-+..|.++ +|++ ....++.+...
T Consensus 256 ~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp 334 (498)
T COG3104 256 LVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNP 334 (498)
T ss_pred HHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCH
Confidence 00000000011222232333333333333322 223333321 2222 23457788888
Q ss_pred HHHhhhhhhhHhHhhhhhhcCCC-chhHHHHHHHHHHHHHHHHHHHh--hcC--CCCchHHHHHHHHHHHHHhhhcCCCC
Q 010733 270 IAFCLGGLFGGKMGDILAQRLPD-SGRVILSQISAASVIPTAAVLLL--VLP--DDPSTAFLHGLALFIMGLCMSWNAPA 344 (502)
Q Consensus 270 ~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (502)
+.-++.+++..++..|.++++.. +.+.........++.....+... ... ....+.++.+...++.+++--+..|
T Consensus 335 ~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSp- 413 (498)
T COG3104 335 FFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISP- 413 (498)
T ss_pred HHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCH-
Confidence 88888888888888885554311 11111111111111111111111 111 2334455566788889999988888
Q ss_pred cchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHH
Q 010733 345 TNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVG 382 (502)
Q Consensus 345 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g 382 (502)
...+++....|+...+..++........+..++..+.+
T Consensus 414 vGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 414 VGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 89999999999988888887776666666555555544
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-14 Score=139.35 Aligned_cols=359 Identities=15% Similarity=0.149 Sum_probs=233.1
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHhhhccCCCc-cchHHHHHH----HHHHHHhhhhhhHhhhccCchHHHHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEVGAALHTDPT-GLGSLTLFR----SIVQSFCYPLAAYLSAHHNRAHVIALGAFLWA 82 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~g~~~s~~----~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~ 82 (502)
.....+-.+..++.........+.....++.... ..+...... .+...+.++..|.++||+|||..+....+...
T Consensus 24 ~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~ 103 (463)
T KOG2816|consen 24 EPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTI 103 (463)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHH
Confidence 3344444445555555555555666666554332 233333333 57778899999999999999999999999988
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh--hhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCC
Q 010733 83 AATFLVAFSSTFFQVAVSRGLNGIG--LAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMG 160 (502)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~ 160 (502)
+..+...+.. +|.++ +.|+. .+.......++++|....++|....|+.......+..++|.+++.+.+.
T Consensus 104 l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~---- 174 (463)
T KOG2816|consen 104 LPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF---- 174 (463)
T ss_pred HhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh----
Confidence 8888777766 34333 44432 3456778889999999999999999999999999999999999999998
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCC--ccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHH-Hhh
Q 010733 161 IPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGT--KIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQG-VFG 237 (502)
Q Consensus 161 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 237 (502)
.+.-.+|.+..+..++..+......||+..++++.. ..+....+....+..+..+..+..-.+|..+.+.... +..
T Consensus 175 -~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~ 253 (463)
T KOG2816|consen 175 -LGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSS 253 (463)
T ss_pred -cCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHH
Confidence 899999999999888888877775555443333221 1111111112222233333333322333333332222 222
Q ss_pred hhhhhHHH-hHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhH-hHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 010733 238 SFSGSAFA-FAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGG-KMGDILAQRLPDSGRVILSQISAASVIPTAAVLL 314 (502)
Q Consensus 238 ~~~~~~~~-~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (502)
........ ..+.|++ .++++..+.+.+.+..+....++.++.. .+...++.++. +..++..-......
T Consensus 254 ~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~---------i~lGl~~~~~~~~~ 324 (463)
T KOG2816|consen 254 LPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRL---------ISLGLLSEFLQLLL 324 (463)
T ss_pred HHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH---------hhHHHHHHHHHHHH
Confidence 22222111 3355666 6899999999999999999999988877 56666777631 22222222222222
Q ss_pred hhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhc
Q 010733 315 LVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYG 390 (502)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~ 390 (502)
..+. ...|..+.. ...........+ ...+..+...+++.+|++.++...+..+.+.++|.+.+.+...+..
T Consensus 325 ~af~--~~~w~~~~~--~v~~~~~~~~~p-a~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~~ 395 (463)
T KOG2816|consen 325 FAFA--TETWMMFAA--GVVVALAGIVFP-AIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTLD 395 (463)
T ss_pred HHHh--ccchhhhHH--HHHHHhhcchhH-HHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 2222 222322222 222333334444 6788889999999999999999999999999999999998877533
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=125.54 Aligned_cols=137 Identities=26% Similarity=0.400 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCc
Q 010733 46 LTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDE 125 (502)
Q Consensus 46 ~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 125 (502)
+.+.+.++..++.++.|++.||+|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+...+++.|.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhhcc
Q 010733 126 TNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYAN 187 (502)
Q Consensus 126 ~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 187 (502)
++|++.+++.+....+|..+++.+.+.+.+. .+|++.|++.++..++..+..+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQF-----LGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc-----cchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999887 89999999988887777776666543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-14 Score=140.58 Aligned_cols=347 Identities=18% Similarity=0.182 Sum_probs=218.3
Q ss_pred hhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccC-----chHHHHHHHHHHHHHHHHHHhhh----hHHH
Q 010733 26 PGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHN-----RAHVIALGAFLWAAATFLVAFSS----TFFQ 96 (502)
Q Consensus 26 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G-----~r~~~~~~~~l~~~~~~~~~~~~----~~~~ 96 (502)
....|.+.+++|+++++...+.+...+...+ .++.|.++|.+- ||+-++++.++.+++.+..+..+ +...
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 3456889999999999999999988888654 567899999873 44456777777766666665533 5666
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhccC--cccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHH
Q 010733 97 VAVSRGLNGIGLAIVIPAIQSLVADSTD--ETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLI 174 (502)
Q Consensus 97 l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~ 174 (502)
..+.-++..+|.+.....+.+++.|... +++|+...+.......+|.+++..++|.+.+. .++|+.|.+.+++
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~-----~~~~~~f~i~~~~ 163 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS-----FGPQGVFLISAAL 163 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc-----CCCeEEehHHHHH
Confidence 6777788899999999999999999873 33478888899999999999999999999987 8999999999888
Q ss_pred HHHHHHHHHhhccCCcccccCCCc-cCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHH-HHHhhhhhhhHHHhHHHHH-
Q 010733 175 SVIVGVLVHVYANDPRCLAKDGTK-IDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVA-QGVFGSFSGSAFAFAAMWL- 251 (502)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 251 (502)
.++..+..+++.||.+..+.++.. .+++..+......++..++.++.++.+..+...+ ..++.........-...|.
T Consensus 164 ~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~ 243 (433)
T PF03092_consen 164 PLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQ 243 (433)
T ss_pred HHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEE
Confidence 887777766666652211111110 0111111112224666677777777777665444 2222111111000001111
Q ss_pred -HHhC---CChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHH-HhhcCC------C
Q 010733 252 -ELIG---FSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVL-LLVLPD------D 320 (502)
Q Consensus 252 -~~~g---~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~ 320 (502)
...+ +++...+.+..+..++.++|..+......+..-|+ ......+. ..+..+. +..... -
T Consensus 244 ~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~------~~~~t~~~--~~~~~l~~~~lv~~~n~~~Gi 315 (433)
T PF03092_consen 244 TDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRR------IFVVTTLV--SVLASLFDLLLVTRWNLDLGI 315 (433)
T ss_pred eccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHH--HHHHhcccEEEEEEEeeeeCc
Confidence 1244 78887777776666666666666554433333331 21111111 1111111 111000 0
Q ss_pred CchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 321 PSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
++.+..+ .--.+..+....... ....+++|..|+..-|+.+++..++.++|..++..++..+.+..
T Consensus 316 ~d~~f~l-gd~~l~~~~~~i~~m-P~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~ 381 (433)
T PF03092_consen 316 PDQWFAL-GDTILEEVIGMIAFM-PSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELF 381 (433)
T ss_pred CCeEEEE-EhHHHHHHHHHHHHH-HHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1111111 112223333333333 35678899999999999999999999999999999999988885
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=142.74 Aligned_cols=164 Identities=15% Similarity=0.182 Sum_probs=135.8
Q ss_pred hhHHHHhhhccCCC--------ccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhh----hH
Q 010733 27 GVYKEVGAALHTDP--------TGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSS----TF 94 (502)
Q Consensus 27 ~~~~~i~~~~~~s~--------~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~----~~ 94 (502)
...+...++.|.++ ++.+.+.++..++..++.++.|++.||+|+|+++..+.++.+++..+..... ++
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~ 308 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY 308 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 44455566666543 5669999999999999999999999999999999999999988877776632 34
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHH-HHHhhhHhHHHHHHHHHHhhcc-CCCcchhHHHHHHH
Q 010733 95 FQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQ-LTGYLGSVLGGFCSVLIASTSF-MGIPGWRLAFHLVG 172 (502)
Q Consensus 95 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~-~~~~~w~~~f~~~~ 172 (502)
+.+++.+++.|++.+...+....++.|++|+++|++++|+.+ ...++|.++||++++.+.++.. .+.+||+..|++.+
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~ 388 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA 388 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 667788999999999999999999999999999999999997 6788999999999999988621 11147999999999
Q ss_pred HHHHHHHHHHHhhccCCc
Q 010733 173 LISVIVGVLVHVYANDPR 190 (502)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~ 190 (502)
++.++..++.+++.++++
T Consensus 389 ~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 389 GYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 998888888777665553
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.59 E-value=5e-14 Score=144.68 Aligned_cols=137 Identities=15% Similarity=0.103 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccC
Q 010733 45 SLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTD 124 (502)
Q Consensus 45 ~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 124 (502)
+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++.+.+++.+++.|++.+...+...++++|++|
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P 678 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP 678 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33556678889999999999999999999999999999999999999988888899999999888899999999999999
Q ss_pred cccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhhcc
Q 010733 125 ETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYAN 187 (502)
Q Consensus 125 ~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 187 (502)
.++|++++|+..+...+|.++||++++.+.+. +...+|++.++..++.+++.+++||
T Consensus 679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~------~~~~pf~i~a~~lll~~ll~~~LPE 735 (742)
T TIGR01299 679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGI------TKAAPILFASAALACGGLLALKLPD 735 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999988763 4677888888887777777766754
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=138.76 Aligned_cols=170 Identities=13% Similarity=0.003 Sum_probs=128.9
Q ss_pred hhccchhhHHHH-hhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHH---HHhhhhHHH
Q 010733 21 DESMLPGVYKEV-GAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFL---VAFSSTFFQ 96 (502)
Q Consensus 21 ~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~---~~~~~~~~~ 96 (502)
..+.....+|.+ .+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++...
T Consensus 265 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (490)
T PRK10642 265 TYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGL 344 (490)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 333344445654 4678988888888888889999999999999999999999988887654443332 223456778
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHH
Q 010733 97 VAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISV 176 (502)
Q Consensus 97 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~ 176 (502)
+++++++.|++.+........++.+.+|++.|++++++......++..++|.+.+++.+.. .+|+.++++..+.++
T Consensus 345 ~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~----~~~~~~~~~~~~~~~ 420 (490)
T PRK10642 345 IFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST----QNLMMPAYYLMVVAV 420 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCchHHHHHHHHHHH
Confidence 8889999998887777778888999999999999999855555666788899988887641 357888877777777
Q ss_pred HHHHHHHhhccCCccccc
Q 010733 177 IVGVLVHVYANDPRCLAK 194 (502)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~ 194 (502)
+..+..+++||+|++..+
T Consensus 421 i~~~~~~~~pes~~~~~~ 438 (490)
T PRK10642 421 IGLITGVTMKETANRPLK 438 (490)
T ss_pred HHHHHHHHhccccCCCCC
Confidence 777777777887776443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.6e-14 Score=138.57 Aligned_cols=150 Identities=11% Similarity=0.179 Sum_probs=131.9
Q ss_pred hccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhH
Q 010733 35 ALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPA 114 (502)
Q Consensus 35 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 114 (502)
+.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+.
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678899999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHhhccCcccchhHHHH-HHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhhccCC
Q 010733 115 IQSLVADSTDETNRGMAFGW-LQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDP 189 (502)
Q Consensus 115 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 189 (502)
...++.+.+|++.|+...+. .+....+|.++++.+.+++.+. .||+..|.+.+++.++..++.++..+++
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~-----~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS-----IGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh-----hCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88999999999988887655 6777889999999999999998 8999999998888877776666655443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-13 Score=134.29 Aligned_cols=158 Identities=17% Similarity=0.133 Sum_probs=135.2
Q ss_pred chhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 010733 25 LPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLN 104 (502)
Q Consensus 25 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~ 104 (502)
....+|.+.++.|. .+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.
T Consensus 235 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (399)
T PRK05122 235 IATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALT 312 (399)
T ss_pred HHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33444555555565 3567778888999999999999999999999999999999999888888888988888999999
Q ss_pred HhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHh
Q 010733 105 GIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHV 184 (502)
Q Consensus 105 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 184 (502)
|++.+...+.....+.+.+|+++|+++.++.+....+|..+++++.+.+.++ .||++.|++.+++.++..++.+.
T Consensus 313 G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 313 GFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW-----FGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888888999999999999999999999999999999999987 89999999998888877776666
Q ss_pred hccCC
Q 010733 185 YANDP 189 (502)
Q Consensus 185 ~~~~~ 189 (502)
+++++
T Consensus 388 ~~~~~ 392 (399)
T PRK05122 388 LYRRA 392 (399)
T ss_pred hcccc
Confidence 65543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-13 Score=132.70 Aligned_cols=155 Identities=12% Similarity=0.003 Sum_probs=129.9
Q ss_pred hhhHH-HHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 010733 26 PGVYK-EVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLN 104 (502)
Q Consensus 26 ~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~ 104 (502)
....| .+++++|.++.+.+++.+...+...++.++.|+++||+|||+.+..+.+...+......+.++++.+++.+++.
T Consensus 236 ~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 315 (393)
T PRK15011 236 IINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLN 315 (393)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33445 45677899999999998888888888999999999999999988887776666655556677888888899999
Q ss_pred HhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHh
Q 010733 105 GIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHV 184 (502)
Q Consensus 105 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 184 (502)
+++.+...+....+..|.+| ++|++++++.+....+|..+++.+++.+.+. .+|+..|++.+++.++..++.++
T Consensus 316 ~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~-----~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 316 AIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEI-----WNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHh
Confidence 98888877888888889887 4699999999999999999999999999997 89999999988887777666665
Q ss_pred hc
Q 010733 185 YA 186 (502)
Q Consensus 185 ~~ 186 (502)
.+
T Consensus 390 ~~ 391 (393)
T PRK15011 390 IK 391 (393)
T ss_pred hc
Confidence 53
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-13 Score=132.89 Aligned_cols=160 Identities=13% Similarity=0.012 Sum_probs=134.8
Q ss_pred cchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 010733 24 MLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGL 103 (502)
Q Consensus 24 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l 103 (502)
......|.+.++.|.+..+.+.+.+.+.++..++.++.|++.||+|||+.+..+.+..+++.++..+.++.+.+.+..++
T Consensus 238 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (406)
T PRK11551 238 FLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFA 317 (406)
T ss_pred HHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33344677778899999999999999999999999999999999999999888877777777777778888888888889
Q ss_pred HHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHH
Q 010733 104 NGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVH 183 (502)
Q Consensus 104 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~ 183 (502)
.|++.+...+...+++.|.+|+++|++.+|+.+....+|..+||.+++.+.++. .+|...+++.....++..+..+
T Consensus 318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~----~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG----RSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC----CchHHHHHHHHHHHHHHHHHHH
Confidence 999888888999999999999999999999999999999999999999998751 4566777766666555555555
Q ss_pred hhcc
Q 010733 184 VYAN 187 (502)
Q Consensus 184 ~~~~ 187 (502)
...+
T Consensus 394 ~~~~ 397 (406)
T PRK11551 394 LLVS 397 (406)
T ss_pred HHhc
Confidence 5544
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=131.81 Aligned_cols=170 Identities=21% Similarity=0.276 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHhhccchhhHHHHhhhc-cCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchH-HHHHHHHHHHHHHHH
Q 010733 10 LVNFAAIMERADESMLPGVYKEVGAAL-HTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAH-VIALGAFLWAAATFL 87 (502)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~-~~~~~~~l~~~~~~~ 87 (502)
...+..+.............|.+.++. |.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 258 (352)
T cd06174 179 LLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLL 258 (352)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344444555555555666667666665 899999999999999999999999999999999999 999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHH
Q 010733 88 VAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLA 167 (502)
Q Consensus 88 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~ 167 (502)
..+.++.+.+.+..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+. .+|+..
T Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~-----~~~~~~ 333 (352)
T cd06174 259 LALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT-----GGYGGV 333 (352)
T ss_pred HHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCcchH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 010733 168 FHLVGLISVIVGVLVHV 184 (502)
Q Consensus 168 f~~~~~~~~~~~~~~~~ 184 (502)
|++.+++.++..+..+.
T Consensus 334 ~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 334 FLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHHHHHHHHHHhee
Confidence 99999988887766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-13 Score=132.85 Aligned_cols=158 Identities=16% Similarity=0.205 Sum_probs=133.1
Q ss_pred cchhhHHHHhhhccCCCcc----chHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010733 24 MLPGVYKEVGAALHTDPTG----LGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAV 99 (502)
Q Consensus 24 ~~~~~~~~i~~~~~~s~~~----~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 99 (502)
...+..+.+.++.+.+..+ .+.+.+++.++..++.+..|++.||+|||+.+..+..+.+++.+...+.++.+.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (408)
T PRK09874 237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGI 316 (408)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444455555554333332 456667777888899999999999999999999999988888888888888999999
Q ss_pred HHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHH
Q 010733 100 SRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVG 179 (502)
Q Consensus 100 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~ 179 (502)
.+++.|++.+...+...+++.+..|+++|++.+++......+|..+||.+++.+.+. .+|++.|++.+++.++..
T Consensus 317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~-----~g~~~~f~~~~~~~l~~~ 391 (408)
T PRK09874 317 LRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN-----YGFRAVFLVTAGVVLFNA 391 (408)
T ss_pred HHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh-----cchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 899999999999888877
Q ss_pred HHHHhhc
Q 010733 180 VLVHVYA 186 (502)
Q Consensus 180 ~~~~~~~ 186 (502)
++.++..
T Consensus 392 ~~~~~~~ 398 (408)
T PRK09874 392 VYSWNSL 398 (408)
T ss_pred HHHHHHH
Confidence 7766543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.54 E-value=8e-12 Score=114.28 Aligned_cols=242 Identities=11% Similarity=0.092 Sum_probs=159.4
Q ss_pred hhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 010733 26 PGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNG 105 (502)
Q Consensus 26 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 105 (502)
+|..-.+-+++|.+..|++.+....+....+..++.|.++||+|||+..++-+++++++++. -..++++.++++|++.|
T Consensus 54 GpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgG 132 (354)
T PF05631_consen 54 GPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGG 132 (354)
T ss_pred cchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHH
Confidence 33333444689999999999999999999999999999999999999999999999998864 45589999999999999
Q ss_pred hhhhhhhhHHHHHHhhcc-----CcccchhHHHHHH-HHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHH
Q 010733 106 IGLAIVIPAIQSLVADST-----DETNRGMAFGWLQ-LTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVG 179 (502)
Q Consensus 106 ~~~~~~~~~~~~~i~~~~-----~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~ 179 (502)
++....+.+-.++...-. |++..+..++... ..+++-.+++.+++.++.+.. ..|-..+|....+..++..
T Consensus 133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~---~~g~vaPF~~a~~~l~~~~ 209 (354)
T PF05631_consen 133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF---GFGPVAPFDAAIVLLAVAA 209 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh---CCCCcchHHHHHHHHHHHH
Confidence 999999998887764332 3233334343333 233444455555666665541 1244888988877777766
Q ss_pred HHHHh-hccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHH-HHHHHhhhhhhhHH-HhHHHHHHHhCC
Q 010733 180 VLVHV-YANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQII-VAQGVFGSFSGSAF-AFAAMWLELIGF 256 (502)
Q Consensus 180 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~g~ 256 (502)
++... .+|+.....+ ..+.. +...+..+.+.++|..+.+ +.+.++-...|.+. .|.|..-.+ -
T Consensus 210 ~~I~~~W~ENyg~~~~---------~~~~~---~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~--~ 275 (354)
T PF05631_consen 210 VLILKTWPENYGDTSS---------SSSLS---GSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPD--D 275 (354)
T ss_pred HHHHhcccccCCCccc---------ccchH---HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCC--C
Confidence 66554 3333221110 01111 2222334455666665554 44545544445443 467766521 1
Q ss_pred ChhHHHHHHHHHHHHHhhhhhhhHhHhhh
Q 010733 257 SHKLTAFLMTLFVIAFCLGGLFGGKMGDI 285 (502)
Q Consensus 257 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 285 (502)
...--|++++.+.++.++|+.+..++..+
T Consensus 276 ~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 276 EELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 12336889999999999999888766554
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=134.19 Aligned_cols=160 Identities=18% Similarity=0.201 Sum_probs=133.3
Q ss_pred HHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhH
Q 010733 15 AIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTF 94 (502)
Q Consensus 15 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~ 94 (502)
.+.............+.+.++++.+..+.+++.+.+.++..++.++.|++.||+|||+.+.++.++.+++.++..+.++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (377)
T TIGR00890 214 FFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPML 293 (377)
T ss_pred HHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccc
Confidence 33333333333344556678899888899999999999999999999999999999999999999999988888777643
Q ss_pred --HHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHH
Q 010733 95 --FQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVG 172 (502)
Q Consensus 95 --~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~ 172 (502)
..+++..++.|++.+...+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.++ .||++.|++.+
T Consensus 294 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-----~g~~~~f~~~~ 368 (377)
T TIGR00890 294 NDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE-----IGFEYTFIVTG 368 (377)
T ss_pred hhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh-----hchhhHHHHHH
Confidence 33456678888888888888888999999999999999999999999999999999999987 89999999988
Q ss_pred HHHHHHH
Q 010733 173 LISVIVG 179 (502)
Q Consensus 173 ~~~~~~~ 179 (502)
++.++..
T Consensus 369 ~~~~~~~ 375 (377)
T TIGR00890 369 AFALTSL 375 (377)
T ss_pred HHHHHhc
Confidence 7766543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-13 Score=128.89 Aligned_cols=166 Identities=11% Similarity=0.009 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHH
Q 010733 9 VLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLV 88 (502)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~ 88 (502)
+...+..++............|.+.+++|.++.++|++.+...++..++.++.+++.||+|+|+.+.++.++.++..++.
T Consensus 208 ~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~ 287 (382)
T TIGR00902 208 LRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAII 287 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555666667899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHH-HHHhhhHhHHHHHHHHHHhhccCCCcchhHH
Q 010733 89 AFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQ-LTGYLGSVLGGFCSVLIASTSFMGIPGWRLA 167 (502)
Q Consensus 89 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~ 167 (502)
+++++.+.+++.+++.|+..+...+....++.+. |+++|++..++++ ...++|.++|+.++|++.++ .++ ..
T Consensus 288 ~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~-----~g~-~~ 360 (382)
T TIGR00902 288 GAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT-----LGA-GT 360 (382)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccH-HH
Confidence 9999999999999999999999999999999998 9899999999986 57889999999999999998 786 66
Q ss_pred HHHHHHHHHHHHHH
Q 010733 168 FHLVGLISVIVGVL 181 (502)
Q Consensus 168 f~~~~~~~~~~~~~ 181 (502)
|++.+++.++..++
T Consensus 361 ~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 361 FVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777655443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.2e-13 Score=130.20 Aligned_cols=157 Identities=14% Similarity=0.092 Sum_probs=137.5
Q ss_pred chhhHHHHhhh-ccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 010733 25 LPGVYKEVGAA-LHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGL 103 (502)
Q Consensus 25 ~~~~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l 103 (502)
.....|.+.++ +|.++.+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++.++
T Consensus 242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL 321 (417)
T ss_pred HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 34445666666 89999999999999999999999999999999888888888888888888888888888888888999
Q ss_pred HHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHH
Q 010733 104 NGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVH 183 (502)
Q Consensus 104 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~ 183 (502)
.|++.+...+...+++.+..|++.|++++++......+|..+|+.+.+.+.+. .|++..+++.++..++..++..
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~-----~g~~~~~~~~~~~~~~~~~~~~ 396 (417)
T PRK10489 322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM-----MTPVASASASGFGLLIIGVLLL 396 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH-----hchhhHHHHHHHHHHHHHHHHH
Confidence 99998888888889999999999999999999999999999999999999998 8999999988887777666665
Q ss_pred hhc
Q 010733 184 VYA 186 (502)
Q Consensus 184 ~~~ 186 (502)
...
T Consensus 397 ~~~ 399 (417)
T PRK10489 397 LVL 399 (417)
T ss_pred Hhc
Confidence 543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.3e-13 Score=129.07 Aligned_cols=154 Identities=14% Similarity=0.107 Sum_probs=132.7
Q ss_pred chhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 010733 25 LPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLN 104 (502)
Q Consensus 25 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~ 104 (502)
.....|.+.++.+.+ +.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.
T Consensus 235 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (392)
T PRK12382 235 IGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALT 312 (392)
T ss_pred HHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 334445555566654 456677778888899999999999999999999999999999988888888888888899999
Q ss_pred HhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHh
Q 010733 105 GIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHV 184 (502)
Q Consensus 105 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 184 (502)
|++.+...+...+.+.+.+|+++|+++.++.+....+|..++|.+.+.+.++ .||++.|++.+++.++..++.++
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 313 GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS-----FGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHHHHHHHHHh
Confidence 9999988888888999999999999999999999999999999999999998 89999999998887777666654
Q ss_pred h
Q 010733 185 Y 185 (502)
Q Consensus 185 ~ 185 (502)
.
T Consensus 388 ~ 388 (392)
T PRK12382 388 S 388 (392)
T ss_pred h
Confidence 4
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-12 Score=126.66 Aligned_cols=156 Identities=12% Similarity=0.014 Sum_probs=128.0
Q ss_pred hhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHH
Q 010733 26 PGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAAT-FLVAFSSTFFQVAVSRGLN 104 (502)
Q Consensus 26 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~-~~~~~~~~~~~l~~~r~l~ 104 (502)
....|.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+... +..+..++. .+..+.++.+.+++..++.
T Consensus 226 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 304 (390)
T PRK03545 226 SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFW 304 (390)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 33345566668999999999999999999999999999999999887644 444444443 3445667888888899999
Q ss_pred HhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHh
Q 010733 105 GIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHV 184 (502)
Q Consensus 105 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 184 (502)
|++.+...+...+.+.+..| ++|++++++.+....+|..+||++++.+.++ .|++..|++.+++.++..+..+.
T Consensus 305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH-----LGLSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cChhHHHHHHHHHHHHHHHHHHH
Confidence 99988777878888888766 6899999999999999999999999999998 99999999999888887777766
Q ss_pred hccC
Q 010733 185 YAND 188 (502)
Q Consensus 185 ~~~~ 188 (502)
..++
T Consensus 379 ~~~~ 382 (390)
T PRK03545 379 IFRR 382 (390)
T ss_pred Hccc
Confidence 5543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-13 Score=134.82 Aligned_cols=168 Identities=11% Similarity=0.092 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhcc--CchHHHH--HHHHHHHHH
Q 010733 9 VLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHH--NRAHVIA--LGAFLWAAA 84 (502)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~--G~r~~~~--~~~~l~~~~ 84 (502)
....+..++...........+|.+.+++|.+..+.+++.++..++..+++++.|++.||. ++|+... .+.++.+++
T Consensus 244 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~ 323 (455)
T TIGR00892 244 LVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLT 323 (455)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHH
Confidence 333444445555555555556777788999999999999999999999999999999983 4444333 344444555
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCc-c
Q 010733 85 TFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIP-G 163 (502)
Q Consensus 85 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~-~ 163 (502)
.+++.+.++++.+++.+++.|++.+...+...+++.|.+|++++++.+++.+....+|.++||.+++.+.+. . +
T Consensus 324 ~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~-----~g~ 398 (455)
T TIGR00892 324 HLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA-----TKN 398 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehh-----cCC
Confidence 666777889999999999999999999999999999999999999999999999999999999999999876 4 6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 010733 164 WRLAFHLVGLISVIVGVL 181 (502)
Q Consensus 164 w~~~f~~~~~~~~~~~~~ 181 (502)
|++.|++.+++.++..+.
T Consensus 399 ~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 399 YKYIFYASGSIVVSAGLF 416 (455)
T ss_pred cchHHHHhhHHHHHHHHH
Confidence 999999988876665543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.4e-13 Score=133.28 Aligned_cols=177 Identities=15% Similarity=0.030 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHhhccchhhHH-HHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYK-EVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATF 86 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~ 86 (502)
++.+++..++............| ++++++|.+..+.++..+...++..++.+++|+++||+|||+.+.....+..++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~ 339 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT 339 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 44555555555554444555566 45677999999999999999999999999999999999999987665544444332
Q ss_pred H--HHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhh-hHhHHHHHHHHHHhhccC----
Q 010733 87 L--VAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYL-GSVLGGFCSVLIASTSFM---- 159 (502)
Q Consensus 87 ~--~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~~~~~---- 159 (502)
+ ....++.+.+.+.+++.|++.............|.+|+++|+++.|+.+....+ |..++|.+.|.+.+...+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~ 419 (467)
T PRK09556 340 LGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI 419 (467)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence 2 233456667778888888654433333346677999999999999999988886 779999999999881000
Q ss_pred ---CCcchhHHHHHHHHHHHHHHHHHHh
Q 010733 160 ---GIPGWRLAFHLVGLISVIVGVLVHV 184 (502)
Q Consensus 160 ---~~~~w~~~f~~~~~~~~~~~~~~~~ 184 (502)
...+|+..|++.++..++..+..+.
T Consensus 420 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 420 FGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 0267999999987777776555544
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=126.51 Aligned_cols=149 Identities=15% Similarity=0.103 Sum_probs=128.6
Q ss_pred HHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh
Q 010733 31 EVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAI 110 (502)
Q Consensus 31 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 110 (502)
.+.+++|.++.+.+++.+.......++.++.|++.||+|||+++.++.++..+...+..+.++.+.+++.+++.|++.+.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999998888877888899999999999999999888887777666667778888888899999999998
Q ss_pred hhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 010733 111 VIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVY 185 (502)
Q Consensus 111 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~ 185 (502)
..+....++.|..|+ ++++++++.+....+|..++|.+++.+.+. .||+..|++.+++.++..++..++
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAER-----WSYHAVYWFAIVMLIVALFCLLLI 373 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchhHHHHHHHHHHHHHHHHhee
Confidence 888888999998875 567999999999999999999999999987 899999999888877766665443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=126.43 Aligned_cols=151 Identities=13% Similarity=0.069 Sum_probs=126.5
Q ss_pred hhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 010733 27 GVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGI 106 (502)
Q Consensus 27 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~ 106 (502)
..+|.+.++.|.+.++.|++.+...++..+++++.|++.||+|+|+++..+..+.+++.+... + ........++.|+
T Consensus 221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~ 297 (381)
T PRK03633 221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGA 297 (381)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHH
Confidence 346777777899999999999999999999999999999999999999888888777665443 2 2334456788888
Q ss_pred hhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 010733 107 GLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVY 185 (502)
Q Consensus 107 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~ 185 (502)
+.....|...+.+.|..|+++++...+......++|.++||.+++++.++ .+|++.|.+.+...++..+..++.
T Consensus 298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~-----~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN-----YSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCccHHHHHHHHHHHHHHHHHHhc
Confidence 87788899999999999888888888888889999999999999999998 899999999888877665555443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=131.14 Aligned_cols=179 Identities=11% Similarity=0.029 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAAT 85 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~ 85 (502)
..+...++..+.............|.+.+++|.+..+.++......++..++.++.|++.||+|||+.+.++.++.+++.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 363 (481)
T TIGR00879 284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICL 363 (481)
T ss_pred HHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33444444444444445555666788889999999888999999999999999999999999999999999988888887
Q ss_pred HHHHhh-----h------hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHH
Q 010733 86 FLVAFS-----S------TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIA 154 (502)
Q Consensus 86 ~~~~~~-----~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 154 (502)
++.++. + +...+....++.+.......+....++.|.+|+++|++++++......+|.++++.+.+.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~ 443 (481)
T TIGR00879 364 FVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML 443 (481)
T ss_pred HHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776621 1 22233333333333223344666778899999999999999999999999999999999998
Q ss_pred hhccCCCcchhHHHHHHHHHHHHHHHHHHhhccCC
Q 010733 155 STSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDP 189 (502)
Q Consensus 155 ~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 189 (502)
++ .+|++.|++.++++++..++.+++.+++
T Consensus 444 ~~-----~~~~~~f~~~~~~~~~~~i~~~~~~~~~ 473 (481)
T TIGR00879 444 ES-----IGVGGVFIFFGGLNVLGLIFVYFFLPET 473 (481)
T ss_pred Hh-----cCccceehhHHHHHHHHHHHHheecccC
Confidence 87 8999999999988888877776654443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-12 Score=131.05 Aligned_cols=149 Identities=13% Similarity=0.130 Sum_probs=117.9
Q ss_pred chhhHHHHh-hhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHH
Q 010733 25 LPGVYKEVG-AALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFS--STFFQVAVSR 101 (502)
Q Consensus 25 ~~~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~--~~~~~l~~~r 101 (502)
....+|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.++..++.... .+.+.+.+..
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL 373 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 344567666 5899999999999999999999999999999999999999888887777665544433 3444444555
Q ss_pred HHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHH
Q 010733 102 GLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIV 178 (502)
Q Consensus 102 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~ 178 (502)
++.+.......+...+++.|.+|+++|++++++......+|..+||.+++.+.+. .||+..+...+....+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~-----~g~~~~~~~~~~~~~~~ 445 (496)
T PRK03893 374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR-----LDLGTALASLSFSLTFV 445 (496)
T ss_pred HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc-----CChHHHHHHHHHHHHHH
Confidence 5555444445567778899999999999999999999999999999999999987 89998887655444333
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.6e-10 Score=106.37 Aligned_cols=364 Identities=13% Similarity=0.048 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhhccC-CCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKEVGAALHT-DPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAA 84 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~ 84 (502)
+....+++++++...+.-++....+.+..+..- +---.+...-.-.+...++++..|.+.||..|.+++..+.+.--++
T Consensus 2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~s 81 (432)
T PF06963_consen 2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLS 81 (432)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHH
Confidence 345678889999998888888888887777743 3323344444455677788899999999999999987776654333
Q ss_pred HHHHHhh------h---------hHHHHHHHHHHHHhhhhhh-hhHHHHHHhhcc------CcccchhHHHHHHHHHhhh
Q 010733 85 TFLVAFS------S---------TFFQVAVSRGLNGIGLAIV-IPAIQSLVADST------DETNRGMAFGWLQLTGYLG 142 (502)
Q Consensus 85 ~~~~~~~------~---------~~~~l~~~r~l~G~~~~~~-~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G 142 (502)
..+.+.. . -...+++.-.+.|.-.-.. .....++=.||. +++.+.+.++...-.-.+.
T Consensus 82 v~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~c 161 (432)
T PF06963_consen 82 VAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFC 161 (432)
T ss_pred HHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHH
Confidence 3322211 1 1122222222333222211 222223334443 3445667777777777789
Q ss_pred HhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhhc----cCCcccccCCCccCCC-C-----------CCc
Q 010733 143 SVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYA----NDPRCLAKDGTKIDHK-P-----------RRP 206 (502)
Q Consensus 143 ~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~-----------~~~ 206 (502)
-+++|++.|.+.+. .+.+....+.++..++..++=+++. +..+....+++.++++ . ...
T Consensus 162 kllaPl~vG~l~t~-----~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (432)
T PF06963_consen 162 KLLAPLFVGLLMTF-----ASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPS 236 (432)
T ss_pred HHHHHHHHHHHhhc-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhh
Confidence 99999999999887 7888888888888777766544322 1111111111111100 0 001
Q ss_pred chhh----hHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhH
Q 010733 207 FWAD----IKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKM 282 (502)
Q Consensus 207 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l 282 (502)
..+. .+...+.++.-++.+.+...+...+.++...+.-..+..|+...|+++...|.+-....+.++.++++..++
T Consensus 237 ~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l 316 (432)
T PF06963_consen 237 ILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWL 316 (432)
T ss_pred HHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 222234455667777777766666666555455557888888889999999999999999999999999999
Q ss_pred hhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCC---chHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCc
Q 010733 283 GDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDP---STAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCR 359 (502)
Q Consensus 283 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~ 359 (502)
.+|+|..+.. .+ ....-..++.+....+. .+..+ .....+...+..-=+|.=..=. ...-+++|..|+++|
T Consensus 317 ~~riGlvr~G---~~-~l~~q~~~L~~~v~~~~-~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL-~~~qi~Qe~V~~~~R 390 (432)
T PF06963_consen 317 MKRIGLVRAG---LW-SLWWQWVCLALCVVSFW-APGSPFSSISAYLLLGGIALSRIGLWSFDL-AVTQIMQENVPESER 390 (432)
T ss_pred HHHhcchhhH---HH-HHHHHHHHHHHHHHHHh-cCCCCchhhHHHHHHHHHHHHHHHHHhhhH-HHHHhhcccCCHHHh
Confidence 9999987532 11 11111111111222221 22211 1112222222222223322222 456788999999999
Q ss_pred hhhHhHHHhhhhhhhchhHHH
Q 010733 360 TSIYALDQSFESIPSSFAPAV 380 (502)
Q Consensus 360 ~~~~g~~~~~~~~~~~i~~~~ 380 (502)
|+..|.-+..+++...+.-.+
T Consensus 391 g~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 391 GAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988766554433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-12 Score=124.71 Aligned_cols=174 Identities=11% Similarity=0.058 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHh-hhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEVG-AALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATF 86 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~ 86 (502)
+..+.+..++.......+....|.+. +++|.+..+.+++.+.+.++..++.++.|++.||+++|+++.....+.++...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~ 286 (394)
T PRK03699 207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMY 286 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Confidence 34444444544444444445556555 67899999999999999999999999999999999999998888887777777
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhH
Q 010733 87 LVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRL 166 (502)
Q Consensus 87 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~ 166 (502)
+....++.+.+.+..++.|++.+..++...++..+..| +++++..+.......+|..++|.+.+.+.+. .||+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~-----~g~~~ 360 (394)
T PRK03699 287 LFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAH-----FGLQA 360 (394)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----hCchh
Confidence 77777788777778889999888888888888888765 5577888999999999999999999999997 89999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 010733 167 AFHLVGLISVIVGVLVHVYAN 187 (502)
Q Consensus 167 ~f~~~~~~~~~~~~~~~~~~~ 187 (502)
.+++.++..++..+....+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 361 ALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred hhhhhHHHHHHHHHHHHHHHH
Confidence 999988887777666555544
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-10 Score=106.65 Aligned_cols=353 Identities=10% Similarity=0.040 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhh-ccCCCccch-HHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKEVGAA-LHTDPTGLG-SLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g-~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
+....+|+-.|+..+ +-.-+.+.|++.+. .|.+..|+. -+.-...-.+....++...+.|.++.|++++++.+...+
T Consensus 5 ~~~~llc~~gf~~~f-rPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~ 83 (412)
T PF01770_consen 5 KITLLLCLFGFFKEF-RPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYII 83 (412)
T ss_pred HHHHHHHHHHHHHhc-CCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 444444544444433 34555666777776 888888764 455666677888889999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcc
Q 010733 84 ATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG 163 (502)
Q Consensus 84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~ 163 (502)
...+.-+.++.+.+-+..++-|++.+. ..+..+++-...|+++-.++.+...+...+|..++.++|-.+... +..+
T Consensus 84 t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~---~~~s 159 (412)
T PF01770_consen 84 TWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF---GGVS 159 (412)
T ss_pred HHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC
Confidence 999999999999999999999998775 677889999999999999999999999999999999999888774 1256
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCCcc---cccCC--------Ccc---CCC------------CCCcchhhhHHHHHH
Q 010733 164 WRLAFHLVGLISVIVGVLVHVYANDPRC---LAKDG--------TKI---DHK------------PRRPFWADIKDLITD 217 (502)
Q Consensus 164 w~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------~~~---~~~------------~~~~~~~~~~~~~~~ 217 (502)
.+..+++......+..++.+++|..++. ++... +.+ +.+ .........+..+++
T Consensus 160 y~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 239 (412)
T PF01770_consen 160 YFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKD 239 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHH
Confidence 6777777665555666666666654321 11100 000 000 000111223456677
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhh-hHHHhHHHHHHHh---CCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCc
Q 010733 218 AKMVIKIPTFQIIVAQGVFGSFSG-SAFAFAAMWLELI---GFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDS 293 (502)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 293 (502)
.++..++|.++...+-..+..+.+ .+.+|.....++. +-...-.|.+-+...+.+.++.+..|++-.+..+..
T Consensus 240 ~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~--- 316 (412)
T PF01770_consen 240 FKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWG--- 316 (412)
T ss_pred HHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHH---
Confidence 788888888877766666666544 4445666665544 444555688888888888888888888744433321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhh
Q 010733 294 GRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIP 373 (502)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~ 373 (502)
.+.+ .....+. +.+++.....++.|. ..+..++++.......+ +...-++.....+.-|-++|+..++..+.
T Consensus 317 -~l~l---~~~S~l~--a~~L~lm~~t~~Iwv-~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~L 388 (412)
T PF01770_consen 317 -ELAL---GVFSLLQ--AGLLFLMSFTGNIWV-CYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFVALVL 388 (412)
T ss_pred -HHHH---HHHHHHH--HHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHHH
Confidence 1111 1111111 112222222333333 33444444444444443 33444444555677788888777655443
Q ss_pred h
Q 010733 374 S 374 (502)
Q Consensus 374 ~ 374 (502)
.
T Consensus 389 Q 389 (412)
T PF01770_consen 389 Q 389 (412)
T ss_pred H
Confidence 3
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-11 Score=121.70 Aligned_cols=170 Identities=14% Similarity=0.071 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHH-HHHHHHHHHHHH
Q 010733 9 VLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIA-LGAFLWAAATFL 87 (502)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~-~~~~l~~~~~~~ 87 (502)
....+..++............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~ 304 (402)
T TIGR00897 225 LLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLA 304 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 3334444444444445556678888889999999999999999999999999999999999988764 333444444333
Q ss_pred HHh-----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCc
Q 010733 88 VAF-----SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIP 162 (502)
Q Consensus 88 ~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~ 162 (502)
..+ .++.+.+++..++.|++.+...+. ...+.+.. +++|++++|+.+....+|..++|.+++.+.+. .
T Consensus 305 l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~-----~ 377 (402)
T TIGR00897 305 LYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF-----F 377 (402)
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----c
Confidence 332 246677778889999988876554 45667764 56899999999999999999999999999997 8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhh
Q 010733 163 GWRLAFHLVGLISVIVGVLVHVY 185 (502)
Q Consensus 163 ~w~~~f~~~~~~~~~~~~~~~~~ 185 (502)
||+..|++.++..++..++.+++
T Consensus 378 g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 378 GAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred chHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998887777666553
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=121.07 Aligned_cols=173 Identities=15% Similarity=0.124 Sum_probs=131.4
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 010733 11 VNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAF 90 (502)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~ 90 (502)
+.+..++............|.+.+++|.+..+.|.+.+.+.++..++.++.|++.||+|||+.+..+..+.+++..+...
T Consensus 210 l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~ 289 (393)
T PRK09705 210 LGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW 289 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445566666778999999999999999999999999999999999999999888888777766553
Q ss_pred hh-hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccC-cccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHH
Q 010733 91 SS-TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTD-ETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAF 168 (502)
Q Consensus 91 ~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f 168 (502)
.+ +...+. -++.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++.+.. .+|...|
T Consensus 290 ~~~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~----g~~~~~~ 363 (393)
T PRK09705 290 LPLQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS----GNYLMDW 363 (393)
T ss_pred ccchHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCchHHH
Confidence 33 222222 246688888888888777777775 568999999999999999999999999999871 2488888
Q ss_pred HHHHHHHHHHHHHHHhhccCC
Q 010733 169 HLVGLISVIVGVLVHVYANDP 189 (502)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~ 189 (502)
++.++..++..+..+.+++++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~ 384 (393)
T PRK09705 364 AFHALCVVGLMIITLRFAPAR 384 (393)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 888877777666655554443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-12 Score=123.85 Aligned_cols=164 Identities=13% Similarity=0.081 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHh-hhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHH-
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEVG-AALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAAT- 85 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~- 85 (502)
+....+..+.............|.+. +++|.+..+.+++.+...++..++.++.|++.||+|||+.+.....+..+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 300 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAV 300 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 33444444454444445555566554 7789999999999999999999999999999999999998775554444333
Q ss_pred -HHHHh--hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHH-HHHHHhhhHhHHHHHHHHHHhhccCCC
Q 010733 86 -FLVAF--SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGW-LQLTGYLGSVLGGFCSVLIASTSFMGI 161 (502)
Q Consensus 86 -~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~~~ 161 (502)
++..+ .++.+.+++..++.|++.+...+...+++.|.+|+++|++++++ .+.+..+|..++|.+++.+.++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~----- 375 (394)
T TIGR00883 301 PLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM----- 375 (394)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH-----
Confidence 22222 24677777888999999989999999999999999999999998 4566778999999999999987
Q ss_pred cc-hhHHHHHHHHHHH
Q 010733 162 PG-WRLAFHLVGLISV 176 (502)
Q Consensus 162 ~~-w~~~f~~~~~~~~ 176 (502)
.+ |++.++...+..+
T Consensus 376 ~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 376 TGDWYAIGYYLAALAL 391 (394)
T ss_pred cCcchhHHHHHHHHHH
Confidence 66 8888777655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.6e-11 Score=118.10 Aligned_cols=156 Identities=10% Similarity=0.069 Sum_probs=123.8
Q ss_pred hhHHHHhhhccCCCccchHHHH-HHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHH
Q 010733 27 GVYKEVGAALHTDPTGLGSLTL-FRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLV---AFS-STFFQVAVSR 101 (502)
Q Consensus 27 ~~~~~i~~~~~~s~~~~g~~~s-~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~---~~~-~~~~~l~~~r 101 (502)
...|.+.+++|.+..+.+++.. ...++..++.+++|++.||+|+|+.+.++.++.++..++. +.. ++.+.+.+.-
T Consensus 244 ~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~ 323 (491)
T PRK11010 244 LTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAV 323 (491)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3345566789999999999974 6668999999999999999999998777666555544322 333 3555555566
Q ss_pred HHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHH
Q 010733 102 GLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVL 181 (502)
Q Consensus 102 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~ 181 (502)
+++.+..+...+...++..+..+++.+++..++.+...++|..+++.+.|.+.+. .||+..|.+.++++++..++
T Consensus 324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~-----~G~~~~f~~~~~~~l~~l~~ 398 (491)
T PRK11010 324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA-----HGWPTFYLFSVAAAVPGLLL 398 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHH
Confidence 7766666666777788899999998999999999999999999999999999998 89999999998888887776
Q ss_pred HHhhcc
Q 010733 182 VHVYAN 187 (502)
Q Consensus 182 ~~~~~~ 187 (502)
.....+
T Consensus 399 ~~~~~~ 404 (491)
T PRK11010 399 LLVCRQ 404 (491)
T ss_pred HHHHHh
Confidence 666543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-11 Score=118.80 Aligned_cols=163 Identities=10% Similarity=0.012 Sum_probs=131.5
Q ss_pred HHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 010733 12 NFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFS 91 (502)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~ 91 (502)
.+..++............|.+.+|.|.+..+.|.+.+...++..+..++.|++.||+|+|+++..+.++.+++.++.+++
T Consensus 211 ~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~ 290 (382)
T PRK11128 211 LLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST 290 (382)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333344455657799999999999999999999999999999999999999999999999988888899
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHH-HHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHH
Q 010733 92 STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQ-LTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHL 170 (502)
Q Consensus 92 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~ 170 (502)
++.+.+++..++.|++.+...+....++.+. +++++++..+... ...++|..+||.++|.+.+. .++ ..|+.
T Consensus 291 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~-----~g~-~~~~~ 363 (382)
T PRK11128 291 TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH-----LGA-GVFWV 363 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccH-HHHHH
Confidence 9999999999999999999999999998887 5667788888886 55678889999999999997 787 46666
Q ss_pred HHHHHHHHHHH
Q 010733 171 VGLISVIVGVL 181 (502)
Q Consensus 171 ~~~~~~~~~~~ 181 (502)
.+++.++..++
T Consensus 364 ~~~~~~~~~~~ 374 (382)
T PRK11128 364 MALVALPALFI 374 (382)
T ss_pred HHHHHHHHHHH
Confidence 66665544433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.2e-11 Score=120.00 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=140.8
Q ss_pred cchhhHHHHh-hhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 010733 24 MLPGVYKEVG-AALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRG 102 (502)
Q Consensus 24 ~~~~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~ 102 (502)
.+..++|.+. +++|.++..+|++.+++.+|..+++++.+++.+|+++++++..+.++++++.+..+++++.+..++.-+
T Consensus 236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~ 315 (524)
T PF05977_consen 236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALF 315 (524)
T ss_pred HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3345567665 568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHH
Q 010733 103 LNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLV 182 (502)
Q Consensus 103 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~ 182 (502)
+.|++.....+...+.+.+..|++.|||+++++++....+..+|..+.|.+.+. .|.+..+.+.++..++..++.
T Consensus 316 l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~-----~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 316 LAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH-----FGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 899999998877666666555
Q ss_pred Hh
Q 010733 183 HV 184 (502)
Q Consensus 183 ~~ 184 (502)
+.
T Consensus 391 ~~ 392 (524)
T PF05977_consen 391 LR 392 (524)
T ss_pred HH
Confidence 44
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=114.47 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHhhhhhhhH---HH-hHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHH
Q 010733 225 PTFQIIVAQGVFGSFSGSA---FA-FAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQ 300 (502)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 300 (502)
.++..++..++.+..+|.. ++ -.|...++.++|..+.|.+.+.+.+..-++.++.|.++||.+.|+-.
T Consensus 26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm-------- 97 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFM-------- 97 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceee--------
Confidence 3344444444444443322 22 36777778889999999999999999999999999999999998532
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHH
Q 010733 301 ISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAV 380 (502)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~ 380 (502)
...+.+..+....+...+ +..++.++..+.|++.++..| .+...+.+-+|+++||+..++-|+..++|+.+.|++
T Consensus 98 ---~~gLilsai~nil~Gfs~-s~~~~~~l~~lng~fQg~Gwp-p~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~ 172 (448)
T COG2271 98 ---AFGLILSAIVNILFGFSP-SLFLFAVLWVLNGWFQGMGWP-PCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLV 172 (448)
T ss_pred ---hHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHcCccccCceEEEehhhhhcccchHHHH
Confidence 222222222222222222 566677888999999999999 788888999999999999999999999999999999
Q ss_pred H--HHHHHH
Q 010733 381 V--GILAQH 387 (502)
Q Consensus 381 ~--g~l~~~ 387 (502)
. +.+.++
T Consensus 173 ~~la~~~~~ 181 (448)
T COG2271 173 ALLAFFAFH 181 (448)
T ss_pred HHHHHHHhc
Confidence 9 777766
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-11 Score=121.50 Aligned_cols=147 Identities=12% Similarity=0.073 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHhhccchhhHHHHhh-hccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHH
Q 010733 10 LVNFAAIMERADESMLPGVYKEVGA-ALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLV 88 (502)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~ 88 (502)
......++............|.+.+ .+|.++.+.+++.....++..++.++.|++.||+|+|+++..+.++.+++..+.
T Consensus 265 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 344 (471)
T PRK10504 265 LGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLF 344 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 3344444444444555556676655 589999999999999999998999999999999999999999998888887776
Q ss_pred Hhh---hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 89 AFS---STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 89 ~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
.+. ++.+.+.+.-++.|++.+...+....++.+..|+++++.+.++.+....+|..+|+.+++.+.+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 345 MLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred HhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 34444556677889999988999999999999999999999999999999999999999988775
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=123.73 Aligned_cols=166 Identities=11% Similarity=0.084 Sum_probs=123.4
Q ss_pred chhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhh--hH-H-HHHHH
Q 010733 25 LPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSS--TF-F-QVAVS 100 (502)
Q Consensus 25 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~--~~-~-~l~~~ 100 (502)
.....|.+.+++|.+....++......+...++.++.|++.||+|||++++.+.++.+++.++.+... +. + ....+
T Consensus 290 ~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~ 369 (479)
T PRK10077 290 VLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS 369 (479)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 33446888888998887778888888888999999999999999999999999999998888776442 11 1 22233
Q ss_pred HHHHHhhhhh-hhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhh-ccCCCcchhHHHHHHHHHHHHH
Q 010733 101 RGLNGIGLAI-VIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST-SFMGIPGWRLAFHLVGLISVIV 178 (502)
Q Consensus 101 r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-~~~~~~~w~~~f~~~~~~~~~~ 178 (502)
-++.+.+.+. ..+....++.|.+|+++|++++|+......+|..+++.+.+.+.+. ...+..+|++.|++.+++.++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (479)
T PRK10077 370 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 449 (479)
T ss_pred HHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHH
Confidence 3444444433 3367789999999999999999999999999999887776554410 0011278999999988888877
Q ss_pred HHHHHhhccCCc
Q 010733 179 GVLVHVYANDPR 190 (502)
Q Consensus 179 ~~~~~~~~~~~~ 190 (502)
.++.+++.+|++
T Consensus 450 ~~~~~~~~~e~~ 461 (479)
T PRK10077 450 ALFMWKFVPETK 461 (479)
T ss_pred HHHHHhccccCC
Confidence 777666554443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.7e-11 Score=117.77 Aligned_cols=136 Identities=16% Similarity=0.153 Sum_probs=94.4
Q ss_pred hHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHH
Q 010733 246 FAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAF 325 (502)
Q Consensus 246 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (502)
..|. +++.|.++.+.++..+...++..++.++.|++.||++||+.. ... ... ..+........+.......
T Consensus 49 ~~p~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~-----~~~-~~~--~~~~~~~~~~~~~~~~~~~ 119 (438)
T TIGR00712 49 AMPY-LVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL-----PAG-LIL--SAAVMLLMGFVPWATSSIA 119 (438)
T ss_pred hhHH-HHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceeh-----HHH-HHH--HHHHHHHHhccccccchHH
Confidence 4554 445699999999999999999999999999999999998532 111 111 1111111111111112233
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcC
Q 010733 326 LHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGY 391 (502)
Q Consensus 326 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~ 391 (502)
.+.+..++.|++.+...+ .....+.|.+|+++|++++|+.++...+++.+++++.+...+...++
T Consensus 120 ~l~~~~~l~g~~~g~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w 184 (438)
T TIGR00712 120 IMFVLLFLNGWFQGMGWP-PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDW 184 (438)
T ss_pred HHHHHHHHHHHHhhcchH-HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhh
Confidence 344555677888777766 66778889999999999999999999999999999887765543333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.1e-11 Score=110.37 Aligned_cols=174 Identities=13% Similarity=0.051 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAAT 85 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~ 85 (502)
.+........+........++.+-|.+++..|.+.+.++++.-.|.++..+++.++|++.|| +.|+.+.....+.++..
T Consensus 212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~ 290 (394)
T COG2814 212 GVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALAL 290 (394)
T ss_pred hHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHH
Confidence 33444444444445555667788899999999999999999999999999999999999999 99999888877777777
Q ss_pred HHHHhh-hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcch
Q 010733 86 FLVAFS-STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGW 164 (502)
Q Consensus 86 ~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w 164 (502)
+...+. ++.+..++.-++.|++...........+++ ..++.+..+.+++...+++|..+|..+++.+.++ +|+
T Consensus 291 l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~-----~g~ 364 (394)
T COG2814 291 LALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA-----LGY 364 (394)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hch
Confidence 766654 466666777777888877777777777777 4468899999999999999999999999999998 999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc
Q 010733 165 RLAFHLVGLISVIVGVLVHVYA 186 (502)
Q Consensus 165 ~~~f~~~~~~~~~~~~~~~~~~ 186 (502)
....++.+++.++..++.+...
T Consensus 365 ~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 365 AATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888877776643
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.9e-11 Score=117.03 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=115.3
Q ss_pred HHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHh---h-hhHHHHHHHHHHHH
Q 010733 30 KEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAF---S-STFFQVAVSRGLNG 105 (502)
Q Consensus 30 ~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~---~-~~~~~l~~~r~l~G 105 (502)
+++.+++|.+......+.....+...++.++.|+++||+|||+++..+.++.+++.+.... . ++.+.+++..++.|
T Consensus 275 ~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (438)
T PRK09952 275 NYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLAN 354 (438)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456778888776666666666777888899999999999999988887766555443322 1 23445555667778
Q ss_pred hhhhhhhhHHHHHHhhccCcccchhHHHHHHH-HHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHh
Q 010733 106 IGLAIVIPAIQSLVADSTDETNRGMAFGWLQL-TGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHV 184 (502)
Q Consensus 106 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 184 (502)
++.+...+...+++.|.+|.+.|+...++... +..+|..++|.+.+++.+.. ..+|+..+...++..++..+..+.
T Consensus 355 ~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~---~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 355 IAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF---GGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred HHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999988888554 45589999999999998741 035888888887777777666655
Q ss_pred hc
Q 010733 185 YA 186 (502)
Q Consensus 185 ~~ 186 (502)
.+
T Consensus 432 ~~ 433 (438)
T PRK09952 432 MK 433 (438)
T ss_pred cc
Confidence 54
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=120.15 Aligned_cols=137 Identities=12% Similarity=0.143 Sum_probs=115.2
Q ss_pred HHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhh
Q 010733 30 KEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATF-LVAFSSTFFQVAVSRGLNGIGL 108 (502)
Q Consensus 30 ~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~-~~~~~~~~~~l~~~r~l~G~~~ 108 (502)
+.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+..+.++.++..+ +....++.+.+.+..++.|+..
T Consensus 263 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (405)
T TIGR00891 263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLV 342 (405)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 345667899999999999999999999999999999999999998888776643333 3334556777777778888777
Q ss_pred hhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcc-hhHHHHHH
Q 010733 109 AIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG-WRLAFHLV 171 (502)
Q Consensus 109 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~-w~~~f~~~ 171 (502)
+...+...+++.|.+|+++|++++|+.+....+|..++|++.+.+.++ .| |+..+...
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-----~g~~~~~~~~~ 401 (405)
T TIGR00891 343 QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR-----LDEYGTALASL 401 (405)
T ss_pred ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh-----ccccchhHHhh
Confidence 777788889999999999999999999999999999999999999997 67 87766653
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-11 Score=118.15 Aligned_cols=171 Identities=15% Similarity=0.159 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHH-hhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchH--HHH------HHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEV-GAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAH--VIA------LGA 78 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~--~~~------~~~ 78 (502)
+...++..++............|.+ .+++|.+..+.+++.+...++..++.++.|++.||+|||+ ... .+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 296 (399)
T TIGR00893 217 VWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAG 296 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 4445555555555555555555654 5668999999999999999999999999999999999996 111 111
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhcc
Q 010733 79 FLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSF 158 (502)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~ 158 (502)
++..+........++.+......++.+.+.+ ..+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~-- 373 (399)
T TIGR00893 297 LVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT-- 373 (399)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC--
Confidence 1112222222223344444444445455444 7889999999999999999999999999999999999999999887
Q ss_pred CCCcc-hhHHHHHHHHHHHHHHHHHHh
Q 010733 159 MGIPG-WRLAFHLVGLISVIVGVLVHV 184 (502)
Q Consensus 159 ~~~~~-w~~~f~~~~~~~~~~~~~~~~ 184 (502)
.+ |+..|++.++..++..+..+.
T Consensus 374 ---~g~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 374 ---TGSFAGALMVVAALALIGALSYLL 397 (399)
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHH
Confidence 77 999999988887776665543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-11 Score=118.87 Aligned_cols=174 Identities=14% Similarity=0.019 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHhh-hccCCCccchHHHHHHHHHHHHhhhhhhHhhhcc--CchHHH-HHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEVGA-ALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHH--NRAHVI-ALGAFLWAA 83 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~--G~r~~~-~~~~~l~~~ 83 (502)
++...+..++...........+|.+.+ +.|.+..+.+++.+.+.++..++.++.|+++||+ +||+.. .....+..+
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~ 334 (452)
T PRK11273 255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 334 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 344445554444444444556676554 5789989999999999999999999999999999 555432 222333333
Q ss_pred HHHHHHh--hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHh-HHHHHHHHHHhhccCC
Q 010733 84 ATFLVAF--SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSV-LGGFCSVLIASTSFMG 160 (502)
Q Consensus 84 ~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~l~~~l~~~~~~~ 160 (502)
+.++..+ ..+.+...+..++.|.+..........+..|.+|+++|++++|+.+....+|.. ++|.+.+.+.++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~---- 410 (452)
T PRK11273 335 ATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---- 410 (452)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH----
Confidence 3333222 234444555555556543333334445677999999999999999988888765 479999999998
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhc
Q 010733 161 IPGWRLAFHLVGLISVIVGVLVHVYA 186 (502)
Q Consensus 161 ~~~w~~~f~~~~~~~~~~~~~~~~~~ 186 (502)
.||+..|++.++.+++..+....+.
T Consensus 411 -~g~~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 411 -FGWDGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred -hcchHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999998887777766655443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.3e-11 Score=117.80 Aligned_cols=175 Identities=16% Similarity=0.161 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHh-hhccCCCccchHHHHHHHHHHHHhhhhhhHhhhcc--CchHHH-HH---HHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEVG-AALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHH--NRAHVI-AL---GAFL 80 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~--G~r~~~-~~---~~~l 80 (502)
++.+.++.+........+...+|.+. +++|.+..+.++..+.+.++..++.++.|+++||+ ++|+.. .. +..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~ 324 (434)
T PRK11663 245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILL 324 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHH
Confidence 33444444444444444444555554 67899999999999999999999999999999999 333322 22 2121
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCC
Q 010733 81 WAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMG 160 (502)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~ 160 (502)
..+...... ..+...+.+..+..|++.............|.+|+++|++++|+.+....+|..++|.+.+++.+.
T Consensus 325 ~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~---- 399 (434)
T PRK11663 325 SVGSLWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI---- 399 (434)
T ss_pred HHHHHHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh----
Confidence 111111122 233333334444455433322333345678999999999999999999999999999999999997
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhccC
Q 010733 161 IPGWRLAFHLVGLISVIVGVLVHVYAND 188 (502)
Q Consensus 161 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 188 (502)
.||+..|++.++..++..+..+...++
T Consensus 400 -~g~~~~f~~~~~~~~~~~~~~~~~~~~ 426 (434)
T PRK11663 400 -WHWTGFFVVISIAAGISALLLLPFLNA 426 (434)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999888887766665543
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-10 Score=114.37 Aligned_cols=178 Identities=19% Similarity=0.161 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHHHHhh-ccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCch--HHHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADE-SMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRA--HVIALGAFLWA 82 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r--~~~~~~~~l~~ 82 (502)
+.+....+++++..-.. .+......+-.+++|++..+...+.-+..+...++++++|++.||+|.| ++++++++++.
T Consensus 281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~ 360 (477)
T PF11700_consen 281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI 360 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 44455555555433333 3444445566679999999999999999999999999999999999999 89998888886
Q ss_pred HHHHHHHh--------hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHH
Q 010733 83 AATFLVAF--------SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIA 154 (502)
Q Consensus 83 ~~~~~~~~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 154 (502)
+..+...+ .++.+.+.+.-++.|+..|..++.+.++.++..|+++.+..+|++....-....+||++.+.+.
T Consensus 361 ~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~ 440 (477)
T PF11700_consen 361 IIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLIT 440 (477)
T ss_pred HHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555 6788899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCcchhHHHHHHHHHHHHHHHHHHhhcc
Q 010733 155 STSFMGIPGWRLAFHLVGLISVIVGVLVHVYAN 187 (502)
Q Consensus 155 ~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 187 (502)
+.. .+-|+.+....++.++..++.+.++.
T Consensus 441 ~~t----g~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 441 DAT----GSQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHh----CCchhHHHHHHHHHHHHHHHHhhccc
Confidence 872 34888888887877777776655543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.4e-11 Score=116.34 Aligned_cols=141 Identities=11% Similarity=0.030 Sum_probs=106.3
Q ss_pred chhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 010733 25 LPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLN 104 (502)
Q Consensus 25 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~ 104 (502)
+...+|.+.++.|.++.+.+.+.+.+.++..++.++.|++.||+|||+.+..+.++.++..+.....++.....+.-++.
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (426)
T PRK12307 250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF 329 (426)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 34456777777899999999999999999999999999999999999999988887776655544333211122222333
Q ss_pred Hh--hhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHH
Q 010733 105 GI--GLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHL 170 (502)
Q Consensus 105 G~--~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~ 170 (502)
|+ +..+..+....++.|.+|+++|++++|+......+|..++|.+.+++.+. .++....++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~-----~g~~~~~~~ 392 (426)
T PRK12307 330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT-----MGLGAALTF 392 (426)
T ss_pred HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc-----ccHHHHHHH
Confidence 33 22233455667889999999999999999999999999999999999987 776654333
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-10 Score=100.87 Aligned_cols=150 Identities=16% Similarity=0.059 Sum_probs=124.8
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
||..+.......... ...+.++..-|++++.+|.|.+|...+.+...+|..+ .++.|.+.|++|++.++.+|.+...+
T Consensus 1 rW~~l~a~~~v~~~~-Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~ 78 (250)
T PF06813_consen 1 RWLSLVASIWVQLCS-GTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV 78 (250)
T ss_pred ChhhHHHHHHHHHhc-CcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 455544444444333 3566777888999999999999999999999999886 58889999999999999999999999
Q ss_pred HHHHHHhh-------hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 84 ATFLVAFS-------STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 84 ~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
|..+...+ .++|.+.+..++.|.+.+....++.....+.|| ++||++.|+.-...+++..+-..+...+.+.
T Consensus 79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 99887654 377888888899999888888888888888897 6899999999999999998888777776654
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.2e-11 Score=115.15 Aligned_cols=130 Identities=16% Similarity=0.100 Sum_probs=119.1
Q ss_pred hhHHHHhhh-ccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHH
Q 010733 27 GVYKEVGAA-LHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSST-FFQVAVSRGLN 104 (502)
Q Consensus 27 ~~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~-~~~l~~~r~l~ 104 (502)
...|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+.+..+.++.+++..+..+.++ ++.+++..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 556776665 8999999999999999999999999999999999999999988888888888888774 88888999999
Q ss_pred HhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 105 GIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 105 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
|++.+...+...+++.|..|+++|++..++.+....+|..+++.+++.+.+.
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999875
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=113.97 Aligned_cols=143 Identities=10% Similarity=0.163 Sum_probs=123.6
Q ss_pred cCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHH
Q 010733 37 HTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQ 116 (502)
Q Consensus 37 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 116 (502)
+.+..+.|.+.+...+...++.+..|++.||+|+|+.+.++.++.+++..+...+++.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678889999999999999999999999999999999999999888888889999999999999999877777777
Q ss_pred HHHhhccCcccchhHHHH-HHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHh
Q 010733 117 SLVADSTDETNRGMAFGW-LQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHV 184 (502)
Q Consensus 117 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 184 (502)
.++.+..+++.++...+. .+....+|..+++.++|++.+. .||+..|.+.+++.++..++..+
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~-----~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS-----IGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh-----cccHHHHHHHHHHHHHHHHHHHH
Confidence 788888887777777666 6788999999999999999997 89999999999888877766543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=113.42 Aligned_cols=149 Identities=14% Similarity=0.052 Sum_probs=116.5
Q ss_pred hHHHHhhhccCCCccchHHHHHHHH-HHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHh------hhhHHHHHHH
Q 010733 28 VYKEVGAALHTDPTGLGSLTLFRSI-VQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAF------SSTFFQVAVS 100 (502)
Q Consensus 28 ~~~~i~~~~~~s~~~~g~~~s~~~l-~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~------~~~~~~l~~~ 100 (502)
..+.+.+|.|.+++++|++...... ...++.++.|++.||+|+|+++..+.++.++..+.... .++.+.+...
T Consensus 230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (390)
T TIGR02718 230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC 309 (390)
T ss_pred HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence 3455556789999999999888764 66777899999999999999988877666443333221 1233444555
Q ss_pred HHHHHhhhhhhhhHHHHHHhhccCc-ccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHH
Q 010733 101 RGLNGIGLAIVIPAIQSLVADSTDE-TNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVG 179 (502)
Q Consensus 101 r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~ 179 (502)
.++.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+.+. .|++..|++.+++.++..
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~-----~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR-----FGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HccHHHHHHHHHHHHHHH
Confidence 6667777788888888888888776 7899999999999999999999999999998 899999998877766654
Q ss_pred HH
Q 010733 180 VL 181 (502)
Q Consensus 180 ~~ 181 (502)
++
T Consensus 385 ~~ 386 (390)
T TIGR02718 385 LL 386 (390)
T ss_pred HH
Confidence 44
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-10 Score=114.01 Aligned_cols=138 Identities=12% Similarity=0.039 Sum_probs=101.0
Q ss_pred HHhhccchhhHHHHhh-hccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHH-H---Hhhhh
Q 010733 19 RADESMLPGVYKEVGA-ALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFL-V---AFSST 93 (502)
Q Consensus 19 ~~~~~~~~~~~~~i~~-~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~-~---~~~~~ 93 (502)
...........|.+.+ .+|.+..+.++....+.++..++.+++|+++||+|||+++..+.++.++.... . ...++
T Consensus 251 ~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (434)
T PRK15075 251 TVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPS 330 (434)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3333344444666554 48999999999999999999999999999999999999987765544332211 1 11234
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHH-HHhhhHhHHHHHHHHHHhh
Q 010733 94 FFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQL-TGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 94 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~ 156 (502)
+..+.+..++.|++.+...+....++.|.+|+++|++.+++... +..++..++|.+.+++.++
T Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~ 394 (434)
T PRK15075 331 FARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV 394 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 44455556666777777777777889999999999999998654 4445577899999999987
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-10 Score=112.34 Aligned_cols=153 Identities=14% Similarity=0.070 Sum_probs=125.3
Q ss_pred hhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhhhhhhh
Q 010733 34 AALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFS-STFFQVAVSRGLNGIGLAIVI 112 (502)
Q Consensus 34 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~ 112 (502)
++.+.+....+++.+.+.+.....+++.|++.||+++|+.+..+..+.+++.++..+. ++.+.+++..++.|+|.+...
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 316 (395)
T PRK10054 237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA 316 (395)
T ss_pred cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677888888888888888899999999999999999998888888777764 577778888999999999888
Q ss_pred hHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCccc
Q 010733 113 PAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCL 192 (502)
Q Consensus 113 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 192 (502)
|...+++.+..|++.|++..+..+ ...+|..+||.+++.+.++ .|....|++.++...+..++...-.++|+|.
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT-----LPPWSLFVILALAIVAAWLLMLKGMRARPWG 390 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH-----cChhhHHHHHHHHHHHHHHHHHhccccCccc
Confidence 999999999999999999988765 5568999999999999998 8888888887776666665555444455543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.2e-10 Score=110.59 Aligned_cols=152 Identities=14% Similarity=0.071 Sum_probs=118.9
Q ss_pred hHHH-HhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHH
Q 010733 28 VYKE-VGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFS-----STFFQVAVSR 101 (502)
Q Consensus 28 ~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~-----~~~~~l~~~r 101 (502)
..|. +.+++|.++.+.++......++..++.++.|++.||+|+|+.+.++.++.+++.++..+. ++++.+++.-
T Consensus 237 ~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (406)
T PRK15402 237 LSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGL 316 (406)
T ss_pred HhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHH
Confidence 3454 456789999999998888888999999999999999999999999988887777776654 3566777888
Q ss_pred HHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHH
Q 010733 102 GLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVL 181 (502)
Q Consensus 102 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~ 181 (502)
++.|++.+...+......... ++++|++..+..+....+|..+|+.+++.+.+. .+|....+..++..++....
T Consensus 317 ~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~ 390 (406)
T PRK15402 317 SLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG-----GGNGLFNLFNLANGLLWLLL 390 (406)
T ss_pred HHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC-----CchHHHHHHHHHHHHHHHHH
Confidence 999999988777766655443 458899999999999999999999999998876 67666555555454444443
Q ss_pred HHhh
Q 010733 182 VHVY 185 (502)
Q Consensus 182 ~~~~ 185 (502)
...+
T Consensus 391 ~~~~ 394 (406)
T PRK15402 391 VRIF 394 (406)
T ss_pred HHHH
Confidence 3333
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-10 Score=116.08 Aligned_cols=164 Identities=12% Similarity=0.048 Sum_probs=109.6
Q ss_pred cchhhHHHHhhhccCCCccchH------------HHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 010733 24 MLPGVYKEVGAALHTDPTGLGS------------LTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFS 91 (502)
Q Consensus 24 ~~~~~~~~i~~~~~~s~~~~g~------------~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~ 91 (502)
......|.+.++.|.+..+.+. ...+..++..++.++.+++.||+|||++++++.++.+++..+.++.
T Consensus 306 ~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~ 385 (502)
T TIGR00887 306 GVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFA 385 (502)
T ss_pred ccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 3344467777888887654321 1233445666688889999999999999988888887777666553
Q ss_pred hh----HHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhcc-----CCCc
Q 010733 92 ST----FFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSF-----MGIP 162 (502)
Q Consensus 92 ~~----~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-----~~~~ 162 (502)
.+ ...+...-+...++.....+....+.+|.+|.+.|+++.++.+....+|.+++|.+.+.+.+... +...
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 465 (502)
T TIGR00887 386 YNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGI 465 (502)
T ss_pred HHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccc
Confidence 21 11111111111222222345667778999999999999999999999999999999998876310 0013
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcc
Q 010733 163 GWRLAFHLVGLISVIVGVLVHVYAN 187 (502)
Q Consensus 163 ~w~~~f~~~~~~~~~~~~~~~~~~~ 187 (502)
++...|++.++..++..+..+++||
T Consensus 466 ~~~~~~~i~~~~~~~~~i~~~~lpE 490 (502)
T TIGR00887 466 WMGHVLEIFALFMFLGILFTLLIPE 490 (502)
T ss_pred cchHHHHHHHHHHHHHHHHheEecc
Confidence 5567788888777776665544554
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=114.22 Aligned_cols=143 Identities=11% Similarity=0.006 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 010733 11 VNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAF 90 (502)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~ 90 (502)
+.+..++............|.+.+++|.+..+.+++.+...++..++.++.|++.||+|+|+.+....+......++...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (398)
T TIGR00895 255 LWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGST 334 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555567888999999999999999999999999999999999999995555444444433333333
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHH
Q 010733 91 SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLI 153 (502)
Q Consensus 91 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 153 (502)
.++.+.+++..++.|++.+...+...+++.|.+|+++|++++|+......+|..+||.++|.+
T Consensus 335 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 335 LFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 567778888889999999999999999999999999999999999999999999999999875
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-10 Score=113.01 Aligned_cols=162 Identities=18% Similarity=0.169 Sum_probs=124.8
Q ss_pred hhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhh-ccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 010733 27 GVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSA-HHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNG 105 (502)
Q Consensus 27 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~d-r~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 105 (502)
...|.+.++.+.++.+.+++.+...++...+..+.+++.| |++.|+.+..+.++.+++.++.+++++++.+.+..++.|
T Consensus 229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 308 (400)
T PRK11646 229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFY 308 (400)
T ss_pred HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3457666666557788999988888776666666666665 577777788888888888888888888888888888999
Q ss_pred hhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcc-hhHHHHHHHHHHHHHHHHHHh
Q 010733 106 IGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG-WRLAFHLVGLISVIVGVLVHV 184 (502)
Q Consensus 106 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~ 184 (502)
++.+...|...+++.+..|+++|++++|+.+....+|..+||.+++++.++... ++ -...|+..++..++..+....
T Consensus 309 ~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 386 (400)
T PRK11646 309 IGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKA--LNQPELPWMMLGIIGLITLLALYW 386 (400)
T ss_pred HHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhh--cCCcchHHHHHHHHHHHHHHHHHH
Confidence 998888899999999999999999999999999999999999999999986210 12 355666666666665555444
Q ss_pred hccCCc
Q 010733 185 YANDPR 190 (502)
Q Consensus 185 ~~~~~~ 190 (502)
..++++
T Consensus 387 ~~~~~~ 392 (400)
T PRK11646 387 QFSQKR 392 (400)
T ss_pred HHhhch
Confidence 444443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=115.15 Aligned_cols=146 Identities=22% Similarity=0.230 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHhhccchhhHHHHhhh-ccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHH
Q 010733 10 LVNFAAIMERADESMLPGVYKEVGAA-LHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLV 88 (502)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~ 88 (502)
..++..++............+.+.++ ++ ++.+.+++.++..++..++.++++++.||+|+|+++..+.++.+++.++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 304 (437)
T TIGR00792 226 ILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIF 304 (437)
T ss_pred HHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333334444443 34 55677888888899999999999999999999999999999888888777
Q ss_pred Hhh-hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccC-------cccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 89 AFS-STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTD-------ETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 89 ~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
.+. ++.+.+++..++.|++.+...+...++++|..+ ++++|...++.+....+|..+++.+.+.+.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 305 FFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred HHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 466777788889999999999999999998865 45679999999999999999999999999875
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-10 Score=111.27 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=101.0
Q ss_pred HHHHhhhhhhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhh-hhcCCCchhHHHHHHHHHHHHHH
Q 010733 232 AQGVFGSFSGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDIL-AQRLPDSGRVILSQISAASVIPT 309 (502)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~ 309 (502)
.........|+...++|.|++ ++|+++.+++.+.........++.+++|+++||+ |||+ ....... . ..+
T Consensus 17 ~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr-----~iliG~i--l-~~l 88 (493)
T PRK15462 17 LQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRM-----AVMLGAL--L-MAI 88 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH-----HHHHHHH--H-HHH
Confidence 333334445677789999998 5899999999999999999999999999999999 9884 2211111 1 111
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCC--CchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 310 AAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPER--CRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
... ++......... ..+.+....++.+...+ ...+++.|.+|++ +|.++.++..+..++|+.++|.+.|++.+.
T Consensus 89 g~l-ll~~~~~~~~~--~~l~l~li~iG~G~~~~-~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~ 164 (493)
T PRK15462 89 GHV-VLGASEIHPSF--LYLSLAIIVCGYGLFKS-NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE 164 (493)
T ss_pred HHH-HHHHhhcchhH--HHHHHHHHHHhcccccc-cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 11111111111 22233344455555555 5678999999875 699999999999999999999999999886
Q ss_pred HhcC
Q 010733 388 VYGY 391 (502)
Q Consensus 388 ~~~~ 391 (502)
. ++
T Consensus 165 ~-Gw 167 (493)
T PRK15462 165 Y-SW 167 (493)
T ss_pred h-Ch
Confidence 3 44
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.2e-11 Score=112.53 Aligned_cols=368 Identities=17% Similarity=0.124 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHH-HHHHHHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHV-IALGAFLWAAATF 86 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~-~~~~~~l~~~~~~ 86 (502)
+..+=+.++..+.....+.|+++.+.+++|+++.+.|.++..--+...++.|++|+++|||-+||. ++.+++.....++
T Consensus 13 l~~~k~f~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~f 92 (618)
T KOG3762|consen 13 LIVAKLFYLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATF 92 (618)
T ss_pred hheeeeeeeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 333444455556666778888899999999999999999999999999999999999999988765 5555566666666
Q ss_pred HHHhhh----hHH----------HHHHHHHHHHhhhhhhhhHHHH----------HHh------------hccCccc---
Q 010733 87 LVAFSS----TFF----------QVAVSRGLNGIGLAIVIPAIQS----------LVA------------DSTDETN--- 127 (502)
Q Consensus 87 ~~~~~~----~~~----------~l~~~r~l~G~~~~~~~~~~~~----------~i~------------~~~~~~~--- 127 (502)
+..+.+ +.. ..-..|..-|+......-.+.. .-. ++.+.+.
T Consensus 93 ll~fv~P~~~~~i~~~~~~c~~~~~~~~~~~~~v~l~~~~~s~~~~~~s~pa~~~~~~Eap~~~~~~~~s~~~~~~d~~~ 172 (618)
T KOG3762|consen 93 LLVFVPPVDKNRIHEVFFCCDSSGLDSGRALRGVTLPVNINSCQEGASSRPAKCALEVEAPGFRNPIEESDFLTFEDEHA 172 (618)
T ss_pred heeeccCcccCcccccccccccccCchhhhccCccceechhhhhccccCCcHHHHHhccCccccCCcccchhhhhhhhhh
Confidence 666653 111 1223344444432222111111 110 0000000
Q ss_pred -------------------------------c----------------------------hh------------HHHHHH
Q 010733 128 -------------------------------R----------------------------GM------------AFGWLQ 136 (502)
Q Consensus 128 -------------------------------r----------------------------~~------------~~~~~~ 136 (502)
| +. ..+...
T Consensus 173 ~i~ps~~~~v~s~~~~~~~~~~s~~~~~~~~rq~~v~~~~v~Ll~~~~~~ef~s~c~~~~~d~~~~~~~~e~~~~~~~~~ 252 (618)
T KOG3762|consen 173 AIAPSVITFVRSYDQALLEPVVSPLFSHRVYRQPEVQKAHVCLLTPIKIGEFFSNCAGTLADAAVFDLLLEAAAITGSLR 252 (618)
T ss_pred ccchhhhcccccCCHHhhccccCcccccchhcccccccceeEEeecccccccccCccccchHHHHHHHHhhhhhhhceee
Confidence 0 00 000011
Q ss_pred HHHhhhHhHHHHHHHHHH--------hhc-----cCCCcchhHHHHHHHHHHHHHHHHHHh--hccC-CcccccCCCccC
Q 010733 137 LTGYLGSVLGGFCSVLIA--------STS-----FMGIPGWRLAFHLVGLISVIVGVLVHV--YAND-PRCLAKDGTKID 200 (502)
Q Consensus 137 ~~~~~G~~~g~~l~~~l~--------~~~-----~~~~~~w~~~f~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~ 200 (502)
.+.+.|..+..++.+.+. +.. .+.+.+|+..+.+.++++.-+.....- +.-+ ......+....+
T Consensus 253 ~~~~~gW~l~~~~~~~i~~d~~~sf~d~~c~~~~~~e~~n~~~~~~v~gv~~~~A~~~~~~~~~~~~~~~~~v~~~~~~~ 332 (618)
T KOG3762|consen 253 YGASLGWGLAMFLCGQIALDYTYSFSDAPCKGDLGDEEKNYYLCQRVCGVLGTGATGSAADCFFKYDMGHRLVVDSYGAE 332 (618)
T ss_pred ccchhHHHHHHHHHhhhhhhhhhhhhcCCCccccchhhhchhhhhhHHHHHHHHHHHHhcCcEEEeccccccccccccHH
Confidence 112222222222222111 000 011356788887777665544443322 2222 111111111000
Q ss_pred --------------CCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHHhHHHHHHHhCCChhHHHHHH
Q 010733 201 --------------HKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFAFAAMWLELIGFSHKLTAFLM 265 (502)
Q Consensus 201 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~~~~~ 265 (502)
..+.+......+..+.+...++.++...++++...+..+ ...+.+++=-++++.+..+..-|...
T Consensus 333 v~~~l~~~~~~~f~~s~~~~~~~~~~~v~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~ 412 (618)
T KOG3762|consen 333 VESMLALAASIAFPSSKLGQGEPHSSSVLADVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVS 412 (618)
T ss_pred HHHHHHHHHHhhccccccCCCCchHHHHHHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehh
Confidence 000111111113444555456666665544443333333 23344566566778887777778777
Q ss_pred HHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCc
Q 010733 266 TLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPAT 345 (502)
Q Consensus 266 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (502)
...-.+.++.-++.+++.+|+|+-+.+ ..++.....=++.+....+ +|.+...-++-|+..+..+. .
T Consensus 413 a~~~~gEI~~~ffs~klI~kiGHv~v~-----------~lgLa~~~~Rf~~~S~L~n-~W~vLPieilqgit~aliWa-a 479 (618)
T KOG3762|consen 413 ALCHAGEILFYFFSFKLIEKIGHVNVM-----------YLGLACNVGRFLYYSYLQN-PWMVLPIEILQGITHALIWA-A 479 (618)
T ss_pred hhhccchHHHHHHHHHHHHHhccccee-----------eehhhHHHHHHHHHHHhcC-chheeeHHHHHHHHHHHHHH-H
Confidence 777788888889999999999998633 1111111111111222223 44455667888999998888 8
Q ss_pred chhhhhhccCCCCchhhHhHHHhhh-hhhhchhHHHHHHHHHHH
Q 010733 346 NNPIFAEIVPERCRTSIYALDQSFE-SIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 346 ~~~~~~~~~p~~~~~~~~g~~~~~~-~~~~~i~~~~~g~l~~~~ 388 (502)
..++++...||+.++++.|+..... .+|-.+|..++|.+.+..
T Consensus 480 ~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f 523 (618)
T KOG3762|consen 480 IISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF 523 (618)
T ss_pred HHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee
Confidence 8899999999999999999988665 778899999999998885
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.5e-09 Score=99.01 Aligned_cols=358 Identities=15% Similarity=0.143 Sum_probs=203.5
Q ss_pred HHHHHHHHHHHhhccchhhHHHHhhhccCC-----CccchHH-HHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 10 LVNFAAIMERADESMLPGVYKEVGAALHTD-----PTGLGSL-TLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s-----~~~~g~~-~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
.+.++..........-......+.+..+-. ....|.. .++-...+.+++++.+.+.|+.|.|+.+.++...+..
T Consensus 13 ~lg~g~~~~f~~~~s~~fi~esvi~sv~~~~~g~i~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~ 92 (461)
T KOG3098|consen 13 MLGFGFLFLFTAYDSQGFIAESVIHSVHERGPGGISAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAA 92 (461)
T ss_pred ehhhhHHHHhHhhhhhHHHHHHHHHHHHhcCCCCcCCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHH
Confidence 334444444444444444444444443221 1234444 6777788889999999999999999999999999988
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccC----
Q 010733 84 ATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFM---- 159 (502)
Q Consensus 84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~---- 159 (502)
..+..-+- |-+.+++...+.|+|.+..+...-.++++..+++.+.+..++..+....+.++|..+...+......
T Consensus 93 f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~ 171 (461)
T KOG3098|consen 93 FPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAII 171 (461)
T ss_pred HHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEeccccccc
Confidence 77776664 4567778889999999999999999999999999999999999999999988887766554432110
Q ss_pred CCcchhHH-------HHHHHHHHHHHHHHHHhhc---cCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHH
Q 010733 160 GIPGWRLA-------FHLVGLISVIVGVLVHVYA---NDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQI 229 (502)
Q Consensus 160 ~~~~w~~~-------f~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (502)
....-+.. +.+.-+..++..+...-.. ..|........+ .. + ....+.++..-++++++....
T Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~~~~~-----~~-~-~~~~~~l~~~~~l~~~~~ml~ 244 (461)
T KOG3098|consen 172 TDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKDVVNCKS-----SS-E-TSFSELLKLTFKLLKTPKMLL 244 (461)
T ss_pred ccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccchhhhhh-----hc-c-ccHHHHHHHHHHHhcCHhHHH
Confidence 01111111 1111111111111111111 111111000000 00 0 233444555556666666666
Q ss_pred HHHHHHhhhhhhhH-HHhHHHHHH---HhCCC-hhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHH
Q 010733 230 IVAQGVFGSFSGSA-FAFAAMWLE---LIGFS-HKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAA 304 (502)
Q Consensus 230 ~~~~~~~~~~~~~~-~~~~~~~~~---~~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 304 (502)
+...++........ ....|.-+. ..+.+ ....++.....+++.+++....+.+.+|.++.... .... ....
T Consensus 245 L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~--~~~~--~~~~ 320 (461)
T KOG3098|consen 245 LFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRK--PTVL--IGII 320 (461)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccC--cchh--HHHH
Confidence 55555444332222 223333332 23332 23344555566777778778888888775443211 1111 2222
Q ss_pred HHHHHHHHHHhhcCCCC-------------chHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhh
Q 010733 305 SVIPTAAVLLLVLPDDP-------------STAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFES 371 (502)
Q Consensus 305 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 371 (502)
+......+..+..+.+. +......++.+..|++-+.... ..+.++....| ++|..+.++...-..
T Consensus 321 ~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t-~~~~ii~~~~~-~~~~~~fsi~kfyq~ 398 (461)
T KOG3098|consen 321 IHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNT-QRYVIIALLYP-DDRAQAFSLFKFYQS 398 (461)
T ss_pred HHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHH-HHHHHHHHHhc-CchHHHHHHHHHHHH
Confidence 22222222222222211 1234556677788888887776 67888888884 678888888887777
Q ss_pred hhhchhHHHH
Q 010733 372 IPSSFAPAVV 381 (502)
Q Consensus 372 ~~~~i~~~~~ 381 (502)
+.+.++-...
T Consensus 399 ~~s~v~~f~~ 408 (461)
T KOG3098|consen 399 VASCVAFFFS 408 (461)
T ss_pred HHHHHHhhhh
Confidence 6665544443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.3e-10 Score=108.12 Aligned_cols=148 Identities=14% Similarity=0.059 Sum_probs=120.2
Q ss_pred HHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Q 010733 29 YKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGL 108 (502)
Q Consensus 29 ~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 108 (502)
.|.+.+++|.+..+.+++.+.+.++..++.++.|++.||.+++..+....+......++....++.+.+.+..++.|++.
T Consensus 240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~ 319 (394)
T PRK10213 240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTF 319 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 47778889999999999999999999999999999999965444444444334444555556677888888899999999
Q ss_pred hhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHH
Q 010733 109 AIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLV 182 (502)
Q Consensus 109 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~ 182 (502)
+...+...+++.+..| +++++..++.....++|..+|+.++|.+.+. .|++..++..+++.++..++.
T Consensus 320 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~-----~g~~~~~~~~~~~~~~~~~~~ 387 (394)
T PRK10213 320 ALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN-----IGLTSPLMLSGTLMLLTALLV 387 (394)
T ss_pred HhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cChhhHHHHHHHHHHHHHHHH
Confidence 9999999989998886 5677888888899999999999999999997 899999998877665555443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=112.14 Aligned_cols=130 Identities=13% Similarity=0.150 Sum_probs=95.9
Q ss_pred HhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchH
Q 010733 245 AFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTA 324 (502)
Q Consensus 245 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (502)
...|.+.+++|.+..+.+++.+...++..++.++.|+++||++||+.. .... ... .+..++. .. .+ ..
T Consensus 16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-----~~~~-~~~--~~~~~~~-~~--~~-~~ 83 (379)
T TIGR00881 16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFL-----PIGL-ILC--AIVNLFF-GF--ST-SL 83 (379)
T ss_pred hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehh-----HHHH-HHH--HHHHHHH-HH--hh-hH
Confidence 456776678999999999999999999999999999999999999632 1111 111 1111111 11 12 23
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHH-HHHHHHHH
Q 010733 325 FLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPA-VVGILAQH 387 (502)
Q Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~-~~g~l~~~ 387 (502)
+.+.+..++.|++.+...+ ...+++.|.+|+++|+++.++.+....+|..++|+ +.+.+.+.
T Consensus 84 ~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 146 (379)
T TIGR00881 84 WVMAALWALNGIFQGMGWP-PCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL 146 (379)
T ss_pred HHHHHHHHHHHhhccccCC-chHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc
Confidence 4455667778888888877 78889999999999999999999999999999995 54444443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.4e-10 Score=109.22 Aligned_cols=156 Identities=12% Similarity=-0.002 Sum_probs=101.7
Q ss_pred chhhHHH-HhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHH--h--hhhHHHHHH
Q 010733 25 LPGVYKE-VGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVA--F--SSTFFQVAV 99 (502)
Q Consensus 25 ~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~--~--~~~~~~l~~ 99 (502)
+...+|. +.+++|.+..+.++..++..+...+++++.|+++||+|||+++.++.++.++...... . .++....+.
T Consensus 262 ~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (432)
T PRK10406 262 FTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFG 341 (432)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 3344555 4566899988999999988888889999999999999999988776665443332221 1 223332222
Q ss_pred HHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhh-hHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHH
Q 010733 100 SRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYL-GSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIV 178 (502)
Q Consensus 100 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~ 178 (502)
.-.+.+++.+...+....++.|++|++.|+.++|+.+....+ .....|.+.+.+... ..|...++..++..++.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~-----g~~~~~~~~~~~~~~i~ 416 (432)
T PRK10406 342 LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSI-----GMETAFFWYVTLMAVVA 416 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHH
Confidence 222233333444456678899999999999999998876554 334477777755432 33666666666666655
Q ss_pred HHHHHhh
Q 010733 179 GVLVHVY 185 (502)
Q Consensus 179 ~~~~~~~ 185 (502)
.+..+++
T Consensus 417 ~~~~~~l 423 (432)
T PRK10406 417 FLVSLML 423 (432)
T ss_pred HHHHHHh
Confidence 5555543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.9e-10 Score=107.70 Aligned_cols=151 Identities=15% Similarity=0.114 Sum_probs=112.5
Q ss_pred HHHHhhhccCCCccchHHHHHHH-HHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHH---Hhh-hhHHHHHHHH--
Q 010733 29 YKEVGAALHTDPTGLGSLTLFRS-IVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLV---AFS-STFFQVAVSR-- 101 (502)
Q Consensus 29 ~~~i~~~~~~s~~~~g~~~s~~~-l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~---~~~-~~~~~l~~~r-- 101 (502)
.+.+.+++|.++.+.|++.+... ++..++.+++|++.||+|+|+.+..+.++..+..+.. ++. ++.+.+++.-
T Consensus 233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 312 (402)
T PRK11902 233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI 312 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 35577789999999999987654 5688999999999999999998877777666554433 343 4556555544
Q ss_pred --HHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHH
Q 010733 102 --GLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVG 179 (502)
Q Consensus 102 --~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~ 179 (502)
+..|++.+...+....++.+.+|.++ .++.+...++|..+++.+++.+.+. .||+..|.+.++++++..
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~-----~G~~~~f~~~~~~~~~~~ 383 (402)
T PRK11902 313 ENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEA-----YGWPGFYLMTVVIALPGL 383 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHH
Confidence 45566666777777778887777554 4556666677887777889999998 999999999988888777
Q ss_pred HHHHhhccC
Q 010733 180 VLVHVYAND 188 (502)
Q Consensus 180 ~~~~~~~~~ 188 (502)
++.+..+++
T Consensus 384 ~~~~~~~~~ 392 (402)
T PRK11902 384 ALLWLMRGT 392 (402)
T ss_pred HHHHHHhhh
Confidence 666555443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-10 Score=104.90 Aligned_cols=176 Identities=13% Similarity=0.058 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHH-HHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYK-EVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAA 84 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~ 84 (502)
+-.+.+++.++..+...-.++..+| +++++|+.++.+.|.....+.+...+..+.+|+++||+|.+|++......++++
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~ 297 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALA 297 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHH
Confidence 3456667777766666666666666 467789999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhh-------hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhc
Q 010733 85 TFLVAFSS-------TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTS 157 (502)
Q Consensus 85 ~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~ 157 (502)
..+.++.. +....+..-+..++..|........++..++| ++-|.+.|+..+..++|...-|..-+...+..
T Consensus 298 ~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t 376 (417)
T COG2223 298 AALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT 376 (417)
T ss_pred HHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhc
Confidence 88887763 44444443444444444444566688888886 57899999999999999999898888888762
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhhc
Q 010733 158 FMGIPGWRLAFHLVGLISVIVGVLVHVYA 186 (502)
Q Consensus 158 ~~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 186 (502)
..+...|++...+.+++.++.+...
T Consensus 377 ----g~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 377 ----GSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999888877644
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.9e-10 Score=112.89 Aligned_cols=137 Identities=16% Similarity=0.188 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHhhhhhhhhHHHHHHhhc
Q 010733 45 SLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTF--FQVAVSRGLNGIGLAIVIPAIQSLVADS 122 (502)
Q Consensus 45 ~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 122 (502)
+......+....+.++.+++.||+|||+++.++.++.+++.++..+.++. +...+.-++.+++.+...+....+..|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445566777888999999999999999999999999988888877644 4555566777777778888899999999
Q ss_pred cCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhhccC
Q 010733 123 TDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYAND 188 (502)
Q Consensus 123 ~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 188 (502)
+|++.|++++|+.+....+|.+++|.+.+ +.+ .++..++++.++..++..++.+++||.
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~lpet 497 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE------KWLFLPLVLFGGLALLAGILTLFLPET 497 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH------HHHhhHHHHHHHHHHHHHHHHHcCcCC
Confidence 99999999999999999999999999988 444 577888888888888887777777653
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-10 Score=105.34 Aligned_cols=153 Identities=20% Similarity=0.198 Sum_probs=133.7
Q ss_pred HHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Q 010733 30 KEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLA 109 (502)
Q Consensus 30 ~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 109 (502)
..-..++|++..+..++.-...+..+++++++|+|.||+|.|+++.+++++..+.++..-+...-..+.++-.+.|...|
T Consensus 277 ~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G 356 (438)
T COG2270 277 VFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLG 356 (438)
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcc
Confidence 34455999999999999999999999999999999999999999999999999999888888777777788899999999
Q ss_pred hhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhhc
Q 010733 110 IVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYA 186 (502)
Q Consensus 110 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 186 (502)
..+..+.++.++..|++|-++.+|++......+..+||.+.+.+.+.. .+-|..+....++..+..++.+..+
T Consensus 357 ~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT----g~~r~g~~~i~vll~iGl~~L~~v~ 429 (438)
T COG2270 357 GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT----GSSRAGVLSIIVLLLIGLLLLLRVK 429 (438)
T ss_pred hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh----cchhhHHHHHHHHHHhhHhhEEeec
Confidence 999999999999999999999999999999999999999999998753 4567777776666555555555444
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-10 Score=113.88 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=107.0
Q ss_pred HHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCch-------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 010733 30 KEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRA-------HVIALGAFLWAAATFLVAFSSTFFQVAVSRG 102 (502)
Q Consensus 30 ~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r-------~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~ 102 (502)
+.+.+++|.+..+.+.+.+++.++..++.+++|+++||+||| ....+..++.++..++.+..++.+...+.-+
T Consensus 277 ~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~ 356 (476)
T PLN00028 277 EYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMI 356 (476)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 345677899999999999999999999999999999999875 2333444444444455556666666666666
Q ss_pred HHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHH
Q 010733 103 LNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLV 182 (502)
Q Consensus 103 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~ 182 (502)
+.+++.+...+...+++.+.. +++|+...|+...+..+|..+++.+.+ .... .+|+..|++.+++.++..++.
T Consensus 357 l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~-----~~y~~~f~~~~~~~~i~~~~~ 429 (476)
T PLN00028 357 LFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSS-----YSTETGISLMGVMIIACTLPV 429 (476)
T ss_pred HHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCC-----ccHhhHHHHHHHHHHHHHHHH
Confidence 777766666666666677654 578999999987776666666665533 1112 579999999988887777666
Q ss_pred Hhh
Q 010733 183 HVY 185 (502)
Q Consensus 183 ~~~ 185 (502)
++.
T Consensus 430 ~~~ 432 (476)
T PLN00028 430 AFI 432 (476)
T ss_pred Hhe
Confidence 554
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.6e-10 Score=109.97 Aligned_cols=149 Identities=13% Similarity=0.100 Sum_probs=106.8
Q ss_pred HHHHHHHHHh-hhhhhhHHHhHHHHHHH---hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhh-hhhcCCCchhHHHHHH
Q 010733 227 FQIIVAQGVF-GSFSGSAFAFAAMWLEL---IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDI-LAQRLPDSGRVILSQI 301 (502)
Q Consensus 227 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~ 301 (502)
++.+....++ ....++...++|.|+++ +|++..+++.+.+...++..++.+++|+++|| +|||+ .+....
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~-----~l~~~~ 86 (475)
T TIGR00924 12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKK-----TMVLGG 86 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHH-----HHHHHH
Confidence 3344444444 34456777899999984 79999999999999999999999999999999 79995 221111
Q ss_pred HHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCC---chhhHhHHHhhhhhhhchhH
Q 010733 302 SAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERC---RTSIYALDQSFESIPSSFAP 378 (502)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~~~~i~~ 378 (502)
. . ..+. ...... .++ ...+.+...+.|++.+...+ ...+++.+.+|+++ |+++.++.+...++|+.++|
T Consensus 87 ~-~--~~~g-~~~~~~--~~~-~~~~~~~~~l~g~g~g~~~~-~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~ 158 (475)
T TIGR00924 87 I-V--LMLG-HFMLAM--SIY-PDLIFYGLGTIAVGSGLFKA-NPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISP 158 (475)
T ss_pred H-H--HHHH-HHHHHh--ccc-HhHHHHHHHHHHhccccccC-CHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHH
Confidence 1 1 1111 111111 122 22344456667888887777 67888889988654 88899999999999999999
Q ss_pred HHHHHHHHHH
Q 010733 379 AVVGILAQHV 388 (502)
Q Consensus 379 ~~~g~l~~~~ 388 (502)
.+.|.+.+..
T Consensus 159 ~l~g~l~~~~ 168 (475)
T TIGR00924 159 LLAGVIAENY 168 (475)
T ss_pred HHHHHHHHhc
Confidence 9999998873
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-09 Score=105.79 Aligned_cols=151 Identities=15% Similarity=0.138 Sum_probs=112.9
Q ss_pred hHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHh
Q 010733 28 VYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAF-SSTFFQVAVSRGLNGI 106 (502)
Q Consensus 28 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~-~~~~~~l~~~r~l~G~ 106 (502)
..|.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+..++..++.++
T Consensus 222 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 301 (382)
T PRK10091 222 IKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCA 301 (382)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345677778999999999999999999999999999999999999999998888888766543 4556666666677777
Q ss_pred hhhhhhhHHHH-HHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHh
Q 010733 107 GLAIVIPAIQS-LVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHV 184 (502)
Q Consensus 107 ~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 184 (502)
+.....+.... ...+..+++.++.. ..+....+|..+||.+++.+.+.. .+|++.+.+.++..++.......
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 302 GLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLG----LAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred HHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcc----cCcchHHHHHHHHHHHHHHHHHH
Confidence 65544554443 33443344444443 346778899999999999998841 68999999887776655544444
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.9e-10 Score=109.24 Aligned_cols=130 Identities=16% Similarity=0.222 Sum_probs=99.1
Q ss_pred HhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchH
Q 010733 245 AFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTA 324 (502)
Q Consensus 245 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (502)
...|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+ ...... .. ..+..... .. .+ ..
T Consensus 26 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~-----~~~~~~--~~-~~~~~~~~-~~--~~-~~ 93 (385)
T TIGR00710 26 PAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRP-----VLLLGL--FI-FALSSLGL-AL--SN-NI 93 (385)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH-----HHHHHH--HH-HHHHHHHH-HH--Hc-cH
Confidence 3577777899999999999999999999999999999999999984 222211 11 11111111 11 12 23
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 325 FLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
+.+.+..++.|++.+...+ ...+++.|.+|+++|+++.|+.+....++..++|.+.+.+.+.
T Consensus 94 ~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 155 (385)
T TIGR00710 94 ETLLVLRFVQAFGASAGSV-ISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW 155 (385)
T ss_pred HHHHHHHHHHHcchhHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566778888877776 7788999999999999999999999999999999999988876
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.2e-10 Score=109.28 Aligned_cols=129 Identities=16% Similarity=0.105 Sum_probs=96.3
Q ss_pred hHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHH
Q 010733 246 FAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAF 325 (502)
Q Consensus 246 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (502)
..|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+ .+.... ....+.... ..+ .++ ..
T Consensus 30 ~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~-----~~~~~~---~~~~~~~~~-~~~--~~~-~~ 97 (412)
T TIGR02332 30 AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR-----WIAGIM---VLWGIASTA-TMF--ATG-PE 97 (412)
T ss_pred HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH-----HHHHHH---HHHHHHHHH-HHH--hcC-HH
Confidence 456555689999999999999999999999999999999999995 211111 111111111 111 122 33
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 326 LHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 326 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
.+.+.-++.|++.+...+ ....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+.
T Consensus 98 ~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (412)
T TIGR02332 98 SLYLLRILVGIAEAGFLP-GILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL 158 (412)
T ss_pred HHHHHHHHHHHHHhhHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344566778888888777 6677889999999999999999999999999999999988753
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-09 Score=104.75 Aligned_cols=179 Identities=13% Similarity=0.164 Sum_probs=140.9
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhhcc-CCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHH
Q 010733 11 VNFAAIMERADESMLPGVYKEVGAALH-TDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVA 89 (502)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~~~~~-~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~ 89 (502)
..+..++............+.+.++.| .+....|.+.++..++-.+.....+++..|+|.|+++.++.+.+++=..+.+
T Consensus 212 Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a 291 (400)
T PF03825_consen 212 FLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYA 291 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555556676778887 6777788888888888889999999999999999999999999999988888
Q ss_pred hh-hhHHHHHH----HHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHH-HHhhhHhHHHHHHHHHHhhc-cCCCc
Q 010733 90 FS-STFFQVAV----SRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQL-TGYLGSVLGGFCSVLIASTS-FMGIP 162 (502)
Q Consensus 90 ~~-~~~~~l~~----~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~~-~~~~~ 162 (502)
.. ++.+...+ ...++|+..+....++..++.+..|++.|+++.+++.+ ..++|..+|..++|++.++. ..+.+
T Consensus 292 ~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~ 371 (400)
T PF03825_consen 292 YFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMF 371 (400)
T ss_pred HhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence 87 55444333 34569999999999999999999999999999999876 46899999999999999862 12234
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccCC
Q 010733 163 GWRLAFHLVGLISVIVGVLVHVYANDP 189 (502)
Q Consensus 163 ~w~~~f~~~~~~~~~~~~~~~~~~~~~ 189 (502)
.|...+.+.+++.++..++.+++-|++
T Consensus 372 ~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 372 DWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 566777777777777777766655443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-10 Score=113.44 Aligned_cols=177 Identities=14% Similarity=0.166 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccC--chHHHHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHN--RAHVIALGAFLWAA 83 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G--~r~~~~~~~~l~~~ 83 (502)
+.++..+++..+......+....+|.+.++.+.+..+.+.+.++..+...++.++.|+++|+.. ++.+..+++++.++
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl 377 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL 377 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence 4566777778888888888888999999999999999999999999999999999999999988 45568888899999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcc
Q 010733 84 ATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG 163 (502)
Q Consensus 84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~ 163 (502)
+.+.++++++++.+...-++.|+..|........++.|..+.++-..+.|+.....+++..+||++++.+.+.. .+
T Consensus 378 ~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t----g~ 453 (509)
T KOG2504|consen 378 ARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT----GN 453 (509)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc----CC
Confidence 99999999999999999999999999998888889999999999999999999999999999999999888762 34
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhc
Q 010733 164 WRLAFHLVGLISVIVGVLVHVYA 186 (502)
Q Consensus 164 w~~~f~~~~~~~~~~~~~~~~~~ 186 (502)
|...|+..++..++.+...+..+
T Consensus 454 Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 454 YDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999888887777665
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.5e-10 Score=105.07 Aligned_cols=150 Identities=10% Similarity=0.176 Sum_probs=130.4
Q ss_pred ccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHH
Q 010733 36 LHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAI 115 (502)
Q Consensus 36 ~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 115 (502)
-+.+....|.+.+...+.-++...+..++.+|+|.|+.++++.++.++=-++++++++.+.+.+.+.+.|+-.+....+.
T Consensus 254 ~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~ 333 (412)
T PF01306_consen 254 AGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAA 333 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34455668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCcccchhHHHH-HHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCc
Q 010733 116 QSLVADSTDETNRGMAFGW-LQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPR 190 (502)
Q Consensus 116 ~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 190 (502)
..++++.+|++..++...+ .+...++|..+.+.++|.+.++ .|.+..|++.+.+.++..++..+..++++
T Consensus 334 fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~-----~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 334 FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR-----IGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh-----cCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 9999999998887777777 4688899999999999999998 99999999999998888888877554433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.5e-10 Score=122.77 Aligned_cols=147 Identities=21% Similarity=0.160 Sum_probs=126.3
Q ss_pred HHHHhhhccCCCc-cchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 010733 29 YKEVGAALHTDPT-GLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIG 107 (502)
Q Consensus 29 ~~~i~~~~~~s~~-~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~ 107 (502)
.+.+.+++|.+.. +.|++.+...++..++.++.|++.||+++|+++.++.++.+++.++..+..+.+.+++..++.|++
T Consensus 256 ~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 335 (1146)
T PRK08633 256 PAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFS 335 (1146)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3455677899998 999999999999999999999999999999999999999988888888888999998999999999
Q ss_pred hhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHH
Q 010733 108 LAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVG 179 (502)
Q Consensus 108 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~ 179 (502)
.+...+...+++.+..|+++|++++++.+....+|.++++.+++.+.... .++...|++.+.+.++..
T Consensus 336 ~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~ 403 (1146)
T PRK08633 336 AGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLG----LSPAGLFYLIALVTLIGT 403 (1146)
T ss_pred HHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888887765421 466667776665554433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-09 Score=104.54 Aligned_cols=146 Identities=15% Similarity=0.062 Sum_probs=116.4
Q ss_pred HHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Q 010733 30 KEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLA 109 (502)
Q Consensus 30 ~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 109 (502)
+.+++.+|.++.+.|++.+...++..++++..+++.||.++|+++..+. +.++..++.++.++++...+.-++.|++.+
T Consensus 230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g 308 (393)
T PRK11195 230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGG 308 (393)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 3456678999999999999999999999999999999999999888875 445555566677788878888889999999
Q ss_pred hhhhHHHHHHhhccCccc-chhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHH
Q 010733 110 IVIPAIQSLVADSTDETN-RGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLV 182 (502)
Q Consensus 110 ~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~ 182 (502)
...+...+.+.+..|++. +|++.++.+....+|..++..+.+.+.. .|-|..+.+.++..++...+.
T Consensus 309 ~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 376 (393)
T PRK11195 309 FFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK------LGVPVVAVIVGFGLLVALAMA 376 (393)
T ss_pred hhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHH
Confidence 888888888888765554 7999999999999999999999987754 565666555444444444333
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-10 Score=107.53 Aligned_cols=132 Identities=20% Similarity=0.265 Sum_probs=99.7
Q ss_pred HHHhHH-HHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 010733 243 AFAFAA-MWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDP 321 (502)
Q Consensus 243 ~~~~~~-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (502)
....+| .+.+++|.++.+.+++.+...++..++.++.|+++||+|||+ .... ......+. ..+.. +. +
T Consensus 15 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----~l~~-~~~~~~~~-~~~~~--~~--~ 83 (352)
T PF07690_consen 15 ISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR-----VLII-GLLLFALG-SLLLA--FA--S 83 (352)
T ss_dssp HHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH-----HHHH-HHHHHHHH-HHHHH--HH--C
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee-----eEee-hhhhhhhH-HHHhh--hh--h
Confidence 334566 344478999999999999999999999999999999999994 2211 11111111 11111 11 3
Q ss_pred chHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 322 STAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
+.+ .+.+..++.|++.+...+ ....++.|.+|+++|++++++.+....+|..++|.+.+.+.+.
T Consensus 84 ~~~-~~~~~~~l~g~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 147 (352)
T PF07690_consen 84 NFW-LLLIARFLLGIGSGFFSP-ASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY 147 (352)
T ss_dssp CHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred hHH-HHhhhccccccccccccc-cccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc
Confidence 334 566778888999888887 7899999999999999999999999999999999999998866
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-09 Score=99.54 Aligned_cols=159 Identities=17% Similarity=0.110 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHhh---hccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 7 TLVLVNFAAIMERADESMLPGVYKEVGA---ALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
.+.+..++.++..........-.+.+.+ .+|.++.+.++..+.+..++.++.+..+++.||+|+||++.++..+..+
T Consensus 141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~ 220 (310)
T TIGR01272 141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVL 220 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3444455555554344443443444443 3689999999999999999999999999999999999999988888888
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcc
Q 010733 84 ATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG 163 (502)
Q Consensus 84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~ 163 (502)
+.++....++...+ ..-++.|++.+..+|...+...+..|+ +.+++.++. ....+|.+++|++.|.+.+. .|
T Consensus 221 ~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~-----~g 292 (310)
T TIGR01272 221 LSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADC-----LG 292 (310)
T ss_pred HHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHh-----cc
Confidence 87766665554333 355688999999999999999998864 345666665 56679999999999999997 78
Q ss_pred hhHHHHHHHH
Q 010733 164 WRLAFHLVGL 173 (502)
Q Consensus 164 w~~~f~~~~~ 173 (502)
.+..|++..+
T Consensus 293 ~~~a~~v~~~ 302 (310)
T TIGR01272 293 IQLAFALPVP 302 (310)
T ss_pred chHHHHHHHH
Confidence 8998885443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-09 Score=106.70 Aligned_cols=152 Identities=15% Similarity=0.103 Sum_probs=100.2
Q ss_pred HHHHHHHH-HhhhhhhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhh-hhhcCCCchhHHHHHHHH
Q 010733 227 FQIIVAQG-VFGSFSGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDI-LAQRLPDSGRVILSQISA 303 (502)
Q Consensus 227 ~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~ 303 (502)
++...... +.....+....+++.|++ ++|++..+++..............+++|+++|| +|||+ .......
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~-----~~~~g~~- 96 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKR-----VIMLGAI- 96 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH-----HHHHHHH-
Confidence 44444443 333445677778999986 799999988888777665555656789999999 59984 2221111
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCC--chhhHhHHHhhhhhhhchhHHHH
Q 010733 304 ASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERC--RTSIYALDQSFESIPSSFAPAVV 381 (502)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~~~~i~~~~~ 381 (502)
. ..+. ..+.... ......+.+...+.|++.+...+ ...++..|.+|++. +..+.++.++..++|..++|.+.
T Consensus 97 ~--~~ig-~~l~~~~--~~~~~~l~~~~~l~gig~g~~~~-~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~ 170 (500)
T PRK09584 97 V--LAIG-YALVAWS--GHDAGIVYMGMATIAVGNGLFKA-NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLAT 170 (500)
T ss_pred H--HHHH-HHHHHHh--cccHHHHHHHHHHHHHhhhcccC-CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 1 1111 1111111 11222334455667888887776 66788999997643 44578888999999999999999
Q ss_pred HHHHHHHhcC
Q 010733 382 GILAQHVYGY 391 (502)
Q Consensus 382 g~l~~~~~~~ 391 (502)
|++.+.. ++
T Consensus 171 g~l~~~~-g~ 179 (500)
T PRK09584 171 PWLAAKY-GW 179 (500)
T ss_pred HHHHHhh-CH
Confidence 9998873 44
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=104.99 Aligned_cols=141 Identities=16% Similarity=0.099 Sum_probs=111.1
Q ss_pred HHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhcc-CchHHHHHHHHHHHHHHHHHHhhhh
Q 010733 15 AIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHH-NRAHVIALGAFLWAAATFLVAFSST 93 (502)
Q Consensus 15 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-G~r~~~~~~~~l~~~~~~~~~~~~~ 93 (502)
.++...........+|.+.++.|.+..+.+.+.+.+.++..++.++.|++.||+ +||+.+.++.++.+++.++..+.++
T Consensus 206 ~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (355)
T TIGR00896 206 FGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM 285 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333333444556777778899999999999999999999999999999999 5667778888888888777777654
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhccC-cccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 94 FFQVAVSRGLNGIGLAIVIPAIQSLVADSTD-ETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 94 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
.+... .-++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+++.++
T Consensus 286 ~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~ 348 (355)
T TIGR00896 286 HGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI 348 (355)
T ss_pred hHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 4567899999998888787776554 45678899999988999999999999999986
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-09 Score=105.99 Aligned_cols=148 Identities=14% Similarity=0.078 Sum_probs=104.7
Q ss_pred HHHHHhhhhhhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhh-hhhcCCCchhHHHHHHHHHHHHH
Q 010733 231 VAQGVFGSFSGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDI-LAQRLPDSGRVILSQISAASVIP 308 (502)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~ 308 (502)
.....-.+..|+...+++.|++ ++|++..++++....+.....+..+++|+++|| +|||+ ......... .
T Consensus 21 ~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~-----~~~~g~~~~---~ 92 (489)
T PRK10207 21 FVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKR-----TIVLGAIVL---A 92 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHH-----HHHHHHHHH---H
Confidence 3333444446677788898987 699999999988888887888888899999999 99995 222211111 1
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCC--chhhHhHHHhhhhhhhchhHHHHHHHHH
Q 010733 309 TAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERC--RTSIYALDQSFESIPSSFAPAVVGILAQ 386 (502)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~~~~i~~~~~g~l~~ 386 (502)
+.... ..... .....+.+...+.+++.+...+ ...+++.|.+|+++ |+.+.++.....++|..++|.+.|++.+
T Consensus 93 ~g~~~-~~~~~--~~~~ll~~~~~l~~ig~g~~~~-~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 93 IGYFM-TGMSL--LKPDLIFIALGTIAVGNGLFKA-NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred HHHHH-HHHhc--cchhHHHHHHHHHHhccccccC-CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11111 1122233456667888888887 77899999998774 5778999999999999999999999988
Q ss_pred HHhcC
Q 010733 387 HVYGY 391 (502)
Q Consensus 387 ~~~~~ 391 (502)
+. +|
T Consensus 169 ~~-gw 172 (489)
T PRK10207 169 KF-GY 172 (489)
T ss_pred hh-Ch
Confidence 74 44
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.8e-08 Score=98.62 Aligned_cols=160 Identities=12% Similarity=0.121 Sum_probs=128.9
Q ss_pred chhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhc-cCchHHHHHHHHHHHHHHHHHHhhhh--------HH
Q 010733 25 LPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAH-HNRAHVIALGAFLWAAATFLVAFSST--------FF 95 (502)
Q Consensus 25 ~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~G~r~~~~~~~~l~~~~~~~~~~~~~--------~~ 95 (502)
...+..++.+.+|.+.++...+...+....-+..+++|+++|+ +|+++.+.++.++..+|.++.++... ..
T Consensus 7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~ 86 (654)
T TIGR00926 7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDL 86 (654)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHH
Confidence 4445566777899999998888888888888999999999996 79999999999999999988877521 23
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhccCcc---cchhHHHHHHHHHhhhHhHHHHHHHHHHhhc--cCCCcchhHHHHH
Q 010733 96 QVAVSRGLNGIGLAIVIPAIQSLVADSTDET---NRGMAFGWLQLTGYLGSVLGGFCSVLIASTS--FMGIPGWRLAFHL 170 (502)
Q Consensus 96 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~--~~~~~~w~~~f~~ 170 (502)
..+++-.+..+|.|++-|...+...|.++++ +|-+.+.++..+.++|..+++++.+++.+.. .....+|...|.+
T Consensus 87 ~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i 166 (654)
T TIGR00926 87 LDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGV 166 (654)
T ss_pred HHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHH
Confidence 3566777888899999999999999999754 3677888999999999999999999887431 0112479999999
Q ss_pred HHHHHHHHHHHHHh
Q 010733 171 VGLISVIVGVLVHV 184 (502)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (502)
.++..++..++...
T Consensus 167 ~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 167 PAILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHHHH
Confidence 98888777766544
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-09 Score=120.58 Aligned_cols=169 Identities=13% Similarity=0.035 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHhhccchhhHHH-HhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHH
Q 010733 9 VLVNFAAIMERADESMLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFL 87 (502)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~ 87 (502)
+...++.++..+....+...+|. +.+.+|.++.+.|++.+.+.++..++.++.|++.|+.++++.+..+.++.+++.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 307 (1140)
T PRK06814 228 WLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLD 307 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHH
Confidence 33444444333333333334455 45568999999999999999999999999999999988888777676666666655
Q ss_pred HHhh--------------------hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHH
Q 010733 88 VAFS--------------------STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGG 147 (502)
Q Consensus 88 ~~~~--------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~ 147 (502)
.++. ++.+.+++..++.|++.+...+...+++.+.+|+++||+++|..+....+|..+++
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~ 387 (1140)
T PRK06814 308 LAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGT 387 (1140)
T ss_pred HHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHH
Confidence 5543 67788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHH
Q 010733 148 FCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVL 181 (502)
Q Consensus 148 ~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~ 181 (502)
++.+.+.... .+....|++.++..++...+
T Consensus 388 ~~~g~l~~~~----~~~~~~~~~~~~~~~~~~~~ 417 (1140)
T PRK06814 388 IILALLQALG----FSIPWIILFIALANLIVAIL 417 (1140)
T ss_pred HHHHHHHHhc----cCHHHHHHHHHHHHHHHHHH
Confidence 9999887431 57777777666554444433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-08 Score=98.65 Aligned_cols=154 Identities=12% Similarity=0.051 Sum_probs=103.1
Q ss_pred hhhHHHHHHHHHHhhhhhhhHHH-hHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHH
Q 010733 223 KIPTFQIIVAQGVFGSFSGSAFA-FAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQ 300 (502)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 300 (502)
.+|.++...+.+...+..+.... ..+.+.+ ++|+|..+.+++.+...++..+.++..|++.||+|.|+ ....
T Consensus 32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~-----v~~~- 105 (462)
T PRK15034 32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRR-----WTVF- 105 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH-----HHHH-
Confidence 34566666666666666555444 3555555 69999999999999999999999999999999999994 2211
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHH
Q 010733 301 ISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAV 380 (502)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~ 380 (502)
......+......+. .....++...+.+.-++.|++ +...+ .....+.+.+|+++||++.|+....+++|..+++.+
T Consensus 106 ~~ll~~i~~~~~~~a-~~~~~~s~~~lli~r~l~Gig-g~~f~-~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l 182 (462)
T PRK15034 106 STAILIIPCVWLGIA-VQNPNTPFGIFIVIALLCGFA-GANFA-SSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV 182 (462)
T ss_pred HHHHHHHHHHHHHHH-HcccCCCHHHHHHHHHHHHHH-HHhHH-HHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH
Confidence 111111221111111 111112344455666777776 44555 678889999999999999999987777888777666
Q ss_pred HHHHH
Q 010733 381 VGILA 385 (502)
Q Consensus 381 ~g~l~ 385 (502)
.+.+.
T Consensus 183 ~p~~i 187 (462)
T PRK15034 183 APLVI 187 (462)
T ss_pred HHHHH
Confidence 66544
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-09 Score=108.73 Aligned_cols=144 Identities=13% Similarity=0.162 Sum_probs=118.7
Q ss_pred HHHHHHHHhhccchhhHHHH-hhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHh-
Q 010733 13 FAAIMERADESMLPGVYKEV-GAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAF- 90 (502)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~- 90 (502)
+..++...........+|.+ ++.+|.++.+.|++.....++..++.++.|++.||+|||+++.++..+.+++..+..+
T Consensus 262 ~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~ 341 (485)
T TIGR00711 262 VYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFT 341 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhcc
Confidence 33333333333334455654 4558999999999999999999999999999999999999999999988888887763
Q ss_pred ---hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 91 ---SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 91 ---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
..+++.+....++.|++.+...+.......+..|+++|+++.++.+....+|..+|+.+.+.+.++
T Consensus 342 ~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 342 FTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235677777789999999988888888888889999999999999999999999999999988764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.1e-09 Score=97.58 Aligned_cols=165 Identities=26% Similarity=0.375 Sum_probs=136.9
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhhccCCC--ccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHH
Q 010733 11 VNFAAIMERADESMLPGVYKEVGAALHTDP--TGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLV 88 (502)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~--~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~ 88 (502)
.....+....+........+.+..+++.+. .+.++..+.+.++..++.++.|.+.||+|||+.+..+.....++.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 86 (338)
T COG0477 7 LALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLL 86 (338)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHH
Confidence 444455555777777788888888888776 489999999999999999999999999999998888887767777777
Q ss_pred Hhhhh--HHHHHHHHHHHHhhhhhhhhHHHHHHhhccCc-ccchhHHHHHHH-HHhhhHhHHHHHHHHHHhhccCCCcch
Q 010733 89 AFSST--FFQVAVSRGLNGIGLAIVIPAIQSLVADSTDE-TNRGMAFGWLQL-TGYLGSVLGGFCSVLIASTSFMGIPGW 164 (502)
Q Consensus 89 ~~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~~~~~~~~w 164 (502)
++..+ .+.+++.|+++|++.+...+...+++.+++|+ ++|+...+.... ...+|..+++.+++.+... ...+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 163 (338)
T COG0477 87 ALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA---LLWGW 163 (338)
T ss_pred HhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhcch
Confidence 77776 89999999999999999999999999999987 678999999888 5888999999888777654 33689
Q ss_pred hHHHHHHHHHHHHH
Q 010733 165 RLAFHLVGLISVIV 178 (502)
Q Consensus 165 ~~~f~~~~~~~~~~ 178 (502)
|+.|.+........
T Consensus 164 ~~~~~~~~~~~~~~ 177 (338)
T COG0477 164 RAAFLLAALLGLLL 177 (338)
T ss_pred HHHHHHHHHHHHHH
Confidence 99777766655444
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=105.45 Aligned_cols=130 Identities=20% Similarity=0.270 Sum_probs=98.5
Q ss_pred HhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchH
Q 010733 245 AFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTA 324 (502)
Q Consensus 245 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (502)
..+|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+ .+.... ...... .... .. .+ ..
T Consensus 12 p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-----~~~~~~-~~~~i~--~~~~-~~--~~-~~ 79 (377)
T PRK11102 12 PALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKP-----VILGGT-LVFALA--AVAC-AL--AQ-TI 79 (377)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChH-----HHHHHH-HHHHHH--HHHH-HH--Hc-cH
Confidence 4678888899999999999999999999999999999999999884 221111 111111 1111 11 12 23
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 325 FLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
..+.+..++.|++.+...+ ...+++.|.+|+++|++++++.+....++..++|.+.+.+.+.
T Consensus 80 ~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 141 (377)
T PRK11102 80 DQLIYMRFLHGLAAAAASV-VINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW 141 (377)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777888777766 6788999999999999999999999999999999999999886
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-09 Score=107.49 Aligned_cols=131 Identities=20% Similarity=0.109 Sum_probs=113.9
Q ss_pred hhhHH-HHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHH
Q 010733 26 PGVYK-EVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFS---STFFQVAVSR 101 (502)
Q Consensus 26 ~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~---~~~~~l~~~r 101 (502)
....| ++++.+|.++.+.|+....+.++..++.++.|++.||+|+|+++..+.++.+++.++..+. ++.+...+..
T Consensus 279 ~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (495)
T PRK14995 279 ELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLM 358 (495)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 33444 4566689999999999999999999999999999999999999999998888877665542 4666677788
Q ss_pred HHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 102 GLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 102 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
++.|+|.+...+.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.++
T Consensus 359 ~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 359 ALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988764
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-08 Score=99.39 Aligned_cols=135 Identities=13% Similarity=0.048 Sum_probs=96.5
Q ss_pred HHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh
Q 010733 31 EVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAI 110 (502)
Q Consensus 31 ~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 110 (502)
.+.+++|.++.+.+.+.+...++..++.++.|++.||+|||+++.++..+..++.++..+.++.+..+..-.+.+.|.+.
T Consensus 229 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 308 (392)
T PRK10473 229 LLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSV 308 (392)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567899999999999999999999999999999999999999999999999888888877666555544555554444
Q ss_pred hhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHH
Q 010733 111 VIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLIS 175 (502)
Q Consensus 111 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~ 175 (502)
..+.. ...+..|.++|+ +......+++..+++.+++++.+. .++.....+.+.+.
T Consensus 309 ~~~~~--~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~-----~g~~~~~~~~~~~~ 363 (392)
T PRK10473 309 GFGVA--MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAV-----LGISAWNMLIGILI 363 (392)
T ss_pred HhHHH--HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHH-----hccchhHHHHHHHH
Confidence 33332 223344544443 444455667777788888888776 66665555544433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-09 Score=103.39 Aligned_cols=126 Identities=6% Similarity=-0.013 Sum_probs=102.0
Q ss_pred HHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHH-HHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhh--
Q 010733 15 AIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRS-IVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFS-- 91 (502)
Q Consensus 15 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~-l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~-- 91 (502)
.++............|.+.+++|.+..+.+.+.++.. ++..++.+++|++.||+|+|+.+..+.++.+++..+..+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~ 297 (356)
T TIGR00901 218 IVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLAS 297 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333344445556666669999999998888766 6788999999999999999999998888888877765553
Q ss_pred ---------hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHh
Q 010733 92 ---------STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGY 140 (502)
Q Consensus 92 ---------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 140 (502)
++.+.+..+.++.+++.+...+...+++.|.+|+++|++.+|+.+...+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 298 NGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 4567788889999999999999999999999999999999999887654
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-07 Score=88.21 Aligned_cols=322 Identities=12% Similarity=0.001 Sum_probs=185.4
Q ss_pred chHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhc
Q 010733 43 LGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADS 122 (502)
Q Consensus 43 ~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 122 (502)
.+.+.-+-.+...+..+.+.++.+|+..+.=+.+..++..++.++.+++++.+.=+++-++.+++.|........+.. .
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~ 139 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F 139 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence 345666677778888888999999988766666777788899999999999999899999999999988888888755 5
Q ss_pred cCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCc----
Q 010733 123 TDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTK---- 198 (502)
Q Consensus 123 ~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 198 (502)
+++ ..++-+..+.+.++++|+..-..+.+.+ .+-|..+++..++.++..+..++..++|+.....++.
T Consensus 140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g----~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~ 211 (402)
T PF02487_consen 140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTTLG----LSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESED 211 (402)
T ss_pred cCc----cccccccCCcChhhHHHHHHHHHHHHhC----cCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCC
Confidence 553 3578888888888888887766555421 5568888888777776666666544433221111100
Q ss_pred c-CCC---CC---CcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhHHH-hHHHHHH--HhCCChhHHHHHHHHH
Q 010733 199 I-DHK---PR---RPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAFA-FAAMWLE--LIGFSHKLTAFLMTLF 268 (502)
Q Consensus 199 ~-~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~g~s~~~~~~~~~~~ 268 (502)
+ +++ .+ .+.....+...++..+..| +.++.++-....+++-|.... ..|...- ...-...+..+....+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k-~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~Y 290 (402)
T PF02487_consen 212 EAEDDLLESETSESKPDSSSKLSFKEKLKRLK-PLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLY 290 (402)
T ss_pred cccccccccccccccccccchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHH
Confidence 0 000 00 0000001111111111111 112222222223333333332 3333331 1222234455666677
Q ss_pred HHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchh
Q 010733 269 VIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNP 348 (502)
Q Consensus 269 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 348 (502)
.++.++++--...+ |+ | ++++....-.+-+.+ ..+-.+..--++.+++.+.++.-|+..|..+. ....
T Consensus 291 Q~GVFISRSS~~~~--ri--r-----~lwils~LQ~~nl~~--~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV-NtF~ 358 (402)
T PF02487_consen 291 QLGVFISRSSLPFF--RI--R-----RLWILSLLQVINLVF--LLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV-NTFY 358 (402)
T ss_pred HHHHhhhhcceeee--eh--h-----hHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH-HHHH
Confidence 77777776543322 22 2 222222211111111 11111111122344455667778888888777 6677
Q ss_pred hhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHH
Q 010733 349 IFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQ 386 (502)
Q Consensus 349 ~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~ 386 (502)
.+.|..|+++|..++|.....-.+|-.++..++-++-.
T Consensus 359 ~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 359 RISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 77788889999999999998888777777766544433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-08 Score=100.08 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=99.3
Q ss_pred HhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchH
Q 010733 245 AFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTA 324 (502)
Q Consensus 245 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (502)
...|.+.+++|.+..+.+++.+...++..++++..|++.||+|+|+ ...... .+..............++.
T Consensus 24 ~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~-----~~~~g~----~l~~~g~~l~~~~~~~~~~ 94 (410)
T TIGR00885 24 PMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKA-----GILLGL----FLYALGAFLFWPAAEIMNY 94 (410)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-----HHHHHH----HHHHHHHHHHHHHHhhccH
Confidence 4677777789999999999999999999999999999999999995 121111 1111111111111112234
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 325 FLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
..+....++.|++.+...+ ....++.+..|++++++..++.+....+|..++|.+.+.+...
T Consensus 95 ~~~l~~~~l~G~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 156 (410)
T TIGR00885 95 TLFLVGLFILTAGLGFLET-AANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS 156 (410)
T ss_pred HHHHHHHHHHHhhHHHHHh-hhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455667788888888777 6678888888999999999999999999999999999988754
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-09 Score=106.56 Aligned_cols=148 Identities=15% Similarity=0.173 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhhccchhhHHHH-hhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHH
Q 010733 9 VLVNFAAIMERADESMLPGVYKEV-GAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFL 87 (502)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~ 87 (502)
....+..++............|.+ ++.+|.++...++......++..++.++++++.||+|+|+++.++.++.+++.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~ 310 (448)
T PRK09848 231 FMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLL 310 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 333444444444333444445544 4446766554444445556778889999999999999999999999998888887
Q ss_pred HHhhh--hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcc-------cchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 88 VAFSS--TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDET-------NRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 88 ~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
..+.+ +++.+++..++.|+|.+...+...++.+|..|.+ ++|...+..+....+|..+|+.+.+.+.+.
T Consensus 311 ~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 311 FFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred HHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77654 6777777888999999999999999999988654 358899999999999999999999888754
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-08 Score=100.40 Aligned_cols=130 Identities=16% Similarity=0.151 Sum_probs=94.1
Q ss_pred HhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchH
Q 010733 245 AFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTA 324 (502)
Q Consensus 245 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (502)
..+|.+.+++|.|+.+.++..+...++..++.++.|+++||+|||+ .+.... .. ..+..... .. .++ .
T Consensus 29 p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~-----~~~~~~--~~-~~~~~~~~-~~--~~~-~ 96 (394)
T PRK11652 29 PAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRP-----VILVGM--SI-FILGTLVA-LF--AHS-L 96 (394)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH-----HHHHHH--HH-HHHHHHHH-HH--Hcc-H
Confidence 3577788899999999999999999999999999999999999985 222111 11 11111111 11 122 3
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 325 FLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
..+.+..++.|++.+...+ ....+..|.+++++++.+++..+....++..++|.+.+.+.+.
T Consensus 97 ~~l~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 158 (394)
T PRK11652 97 TVLIAASAIQGLGTGVGGV-MARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL 158 (394)
T ss_pred HHHHHHHHHHHhhhhHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344556667777665555 5567778888888899999999998899999999999988775
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-08 Score=89.01 Aligned_cols=174 Identities=17% Similarity=0.129 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHH-HHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAF-LWAAA 84 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~-l~~~~ 84 (502)
+.+.++|+.+....+-...+++. .+++.+|.|+...+.+.+....-.++.+++.|.++||+|++...+.+.. ...++
T Consensus 267 w~~~iicv~yyva~fPFi~lg~~--fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~ 344 (459)
T KOG4686|consen 267 WVLVIICVLYYVAWFPFITLGPM--FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLG 344 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH--HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHH
Confidence 34555566665555554444443 4789999999999999999888899999999999999999987665544 44444
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcch
Q 010733 85 TFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGW 164 (502)
Q Consensus 85 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w 164 (502)
-.+..|+ ++.=+++-.+.|+.....-.+....++...|+++.|++.|..+...++|.++.|++++.+.+.. +.+.|
T Consensus 345 H~~l~Ft--~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~--g~y~~ 420 (459)
T KOG4686|consen 345 HSGLFFT--FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD--GSYDN 420 (459)
T ss_pred hhhHHhh--hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC--Cchhh
Confidence 4444442 3333456677888877666667788888899999999999999999999999999999998852 22445
Q ss_pred hHHHHH-HHHHHHHHHHHHHhh
Q 010733 165 RLAFHL-VGLISVIVGVLVHVY 185 (502)
Q Consensus 165 ~~~f~~-~~~~~~~~~~~~~~~ 185 (502)
--.|.+ .+.+++....+.+.+
T Consensus 421 le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 421 LEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhhe
Confidence 444444 444444444444443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-05 Score=77.39 Aligned_cols=278 Identities=10% Similarity=-0.006 Sum_probs=162.5
Q ss_pred hHHHHHHHHHHHHHHHhhccchhhHHHHhhhccC-----CCccchHHHHHHHHHHHHh-hhhhhHhhhccCchHHHHHHH
Q 010733 5 TLTLVLVNFAAIMERADESMLPGVYKEVGAALHT-----DPTGLGSLTLFRSIVQSFC-YPLAAYLSAHHNRAHVIALGA 78 (502)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----s~~~~g~~~s~~~l~~~~~-~~~~G~l~dr~G~r~~~~~~~ 78 (502)
++.+....+..|+..+..+.. -.+.+.+.+ +...+.++-+...+..++. .++.+++++|++|++++-+..
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iL----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~ 81 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTIL----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVI 81 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHH
Confidence 344555556666666555553 455666655 3357889999888877776 899999999999999988877
Q ss_pred HHHHHHHHHHHhh----h---------------------------hHHHHHHHHHHHHhhhhhhhh-HHHHHHhhccCcc
Q 010733 79 FLWAAATFLVAFS----S---------------------------TFFQVAVSRGLNGIGLAIVIP-AIQSLVADSTDET 126 (502)
Q Consensus 79 ~l~~~~~~~~~~~----~---------------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~ 126 (502)
..+.+..++.++. + +.|...+.-+...+-...... ....+..|.++.+
T Consensus 82 ~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~ 161 (472)
T TIGR00769 82 SPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTID 161 (472)
T ss_pred HHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 7777777766654 1 123333444455554444554 7789999999999
Q ss_pred cchhHHHHHHHHHhhhHhHHHHHHHHHHhhc---cCCCcchh----HHHHHHHHHHHHHHHHHHhhccCCcccccCCCcc
Q 010733 127 NRGMAFGWLQLTGYLGSVLGGFCSVLIASTS---FMGIPGWR----LAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKI 199 (502)
Q Consensus 127 ~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~---~~~~~~w~----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (502)
|-.|..++...+.++|..+++.+..++.+.. ..+...|. ..+.+.++.+++...+.+.+.+.....+...+.+
T Consensus 162 qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 241 (472)
T TIGR00769 162 EAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPA 241 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchh
Confidence 9999999999999999999999988877310 01123452 3334444444443333333332221111000000
Q ss_pred CCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhHHHh-HHHHHHHhCCChhH----HHHHHHHHHHHHhh
Q 010733 200 DHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAFAF-AAMWLELIGFSHKL----TAFLMTLFVIAFCL 274 (502)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~----~~~~~~~~~~~~~~ 274 (502)
+.+++++. ..+.....+.++++|....+....++.......... .-..+++..-++.+ .|.+....++..++
T Consensus 242 ~~~~k~k~---k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~ 318 (472)
T TIGR00769 242 LKEKKVKP---KMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVT 318 (472)
T ss_pred hccccCCC---CCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111 123445667788888777666555554443222211 22222322233322 23334444555556
Q ss_pred hhhhhHhHhhhhhhc
Q 010733 275 GGLFGGKMGDILAQR 289 (502)
Q Consensus 275 ~~~~~g~l~d~~~~~ 289 (502)
..++.+++.+|+|-+
T Consensus 319 ~~l~~~~l~~~~Gw~ 333 (472)
T TIGR00769 319 MMLLSGNVIRKYGWL 333 (472)
T ss_pred HHHHHHHHHHHhhHH
Confidence 666678888888876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-08 Score=100.10 Aligned_cols=141 Identities=12% Similarity=0.067 Sum_probs=114.1
Q ss_pred hhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhh
Q 010733 33 GAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVI 112 (502)
Q Consensus 33 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 112 (502)
++.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++.+++.++..+.++.+. +..-++.|++.+..+
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~glg~~~i~ 365 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQY 365 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999998888777777666665432 455678999999999
Q ss_pred hHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcc-hhHHHHHHHHHHHHHHHH
Q 010733 113 PAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG-WRLAFHLVGLISVIVGVL 181 (502)
Q Consensus 113 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~-w~~~f~~~~~~~~~~~~~ 181 (502)
|...+...+.+++ +.+.+.++... ..+|..++|++.+.+.+. .| -|..|++..+..+.....
T Consensus 366 P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~-----~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 366 PTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDA-----AGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHH
Confidence 9999999998764 46677777764 447888899999999887 66 788888765554444433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-08 Score=98.53 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=93.8
Q ss_pred hHHHhHHHHH-HHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010733 242 SAFAFAAMWL-ELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDD 320 (502)
Q Consensus 242 ~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (502)
....+.|.++ +++|.|+.+.+++.+...++..++.++.|++.||+|||+ ..... .....+ ..+.. .. .
T Consensus 19 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----~~~~~-~~~~~i--~~~~~-~~--~ 87 (366)
T TIGR00886 19 AFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRY-----TTTLS-LLLLAI--PCLWA-GL--A 87 (366)
T ss_pred HhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchH-----HHHHH-HHHHHH--HHHHH-HH--H
Confidence 4445778645 589999999999999999999999999999999999985 22111 111111 11111 11 1
Q ss_pred CchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 321 PSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
+...+.+.+..++.|++.+.. . ....++.+.+|+++|+++.++.....++|..+++.+.+.+.+.
T Consensus 88 ~~~~~~~~~~~~~~g~~~~~~-~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~ 152 (366)
T TIGR00886 88 VQSYSVLLLLRLFIGIAGGSF-A-SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGS 152 (366)
T ss_pred hhhHHHHHHHHHHHHHhchhh-H-hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 202333445566677765543 3 4678889999999999999999988889998888888877764
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=9e-09 Score=103.05 Aligned_cols=177 Identities=15% Similarity=0.207 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHH-hhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHH--------HHHH
Q 010733 7 TLVLVNFAAIMERADESMLPGVYKEV-GAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHV--------IALG 77 (502)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~--------~~~~ 77 (502)
.++..++..+........+...+|.+ .+++|.+..+.|++.++..++..++.++.|+++||+++|+. +..+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 341 (465)
T TIGR00894 262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNG 341 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 45556666666665555555556654 56689999999999999999999999999999999875431 1111
Q ss_pred HHHH--HHHHHHHHh-hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHH
Q 010733 78 AFLW--AAATFLVAF-SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIA 154 (502)
Q Consensus 78 ~~l~--~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 154 (502)
.... ++..++... ..+.+..++.-.+.+.+.+...+.......|..| +.+|.+.++.+....+|..++|.+.+.+.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~ 420 (465)
T TIGR00894 342 IGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNIL 420 (465)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 1111 111111122 2344444444455555555555555555556665 58999999999999999999999999887
Q ss_pred hhccCCCcchhHHHHHHHHHHHHHHHHHHhhc
Q 010733 155 STSFMGIPGWRLAFHLVGLISVIVGVLVHVYA 186 (502)
Q Consensus 155 ~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 186 (502)
+.. +..+|+..|++.++..++..++...+.
T Consensus 421 ~~~--~~~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 421 SQD--SKNVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred CCC--CchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 641 113499999999888777776655543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-08 Score=96.52 Aligned_cols=169 Identities=17% Similarity=0.116 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCch---HHHH-HHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRA---HVIA-LGAFLWAA 83 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r---~~~~-~~~~l~~~ 83 (502)
++.+.+.+++.......+..-+|.+.++.|.+.. .+...++..+...++ .++++||.+|| +... ...++.++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~ 269 (368)
T TIGR00903 194 LWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAA 269 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHH
Confidence 3455555555555555555557777777777654 555555555544444 57777877653 3323 24444455
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcc
Q 010733 84 ATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG 163 (502)
Q Consensus 84 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~ 163 (502)
...+.++..+.+..++.-++.|++.....+...++.+|.+|++.|++++|+.+....+|...+|++.+.+.. +
T Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-------~ 342 (368)
T TIGR00903 270 FFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-------S 342 (368)
T ss_pred HHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-------C
Confidence 554555555555555555667777777778888999999999999999999999999999999999887752 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcc
Q 010733 164 WRLAFHLVGLISVIVGVLVHVYAN 187 (502)
Q Consensus 164 w~~~f~~~~~~~~~~~~~~~~~~~ 187 (502)
-+..|.+.+++.++..+..+.+++
T Consensus 343 ~~~~f~~~~~~~~i~~~~~~~~~~ 366 (368)
T TIGR00903 343 AEAYFTFLAILITIAFAIALLLPN 366 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 677788888877777766654443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-08 Score=98.98 Aligned_cols=128 Identities=14% Similarity=0.114 Sum_probs=93.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHH
Q 010733 247 AAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFL 326 (502)
Q Consensus 247 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (502)
+|...++++.+..+.++..+.+.++..++.++.|+++||+|||+ .+.... .. ..+..+.. .. .++ ...
T Consensus 39 l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~-----~l~~~~-~~--~~~~~~~~-~~--a~~-~~~ 106 (413)
T PRK15403 39 IINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRP-----VLITGA-LI--FTLACAAT-LF--TTS-MTQ 106 (413)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchH-----HHHHHH-HH--HHHHHHHH-HH--cCC-HHH
Confidence 55656689999999999999999999999999999999999995 222211 11 11111111 11 122 333
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 327 HGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
+.+.-++.|++.+...+ ....+..|.+|++++++++++.+....++..++|.+++.+.+.
T Consensus 107 l~~~r~l~Gi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~ 166 (413)
T PRK15403 107 FLIARFIQGTSICFIAT-VGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF 166 (413)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556667777665444 5567888999999999999999999999999999999988776
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.8e-08 Score=95.84 Aligned_cols=129 Identities=9% Similarity=0.009 Sum_probs=101.7
Q ss_pred hhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHH---Hh--hhhHHHHHHHH
Q 010733 27 GVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLV---AF--SSTFFQVAVSR 101 (502)
Q Consensus 27 ~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~---~~--~~~~~~l~~~r 101 (502)
...|.+.+++|.++.+.|+....+.++..++.+..+++.||+|+|+.+....++.+++.+.. .+ .++.+.+++..
T Consensus 224 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (401)
T PRK11043 224 TGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPF 303 (401)
T ss_pred HHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34566777899999999998888888999999999999999999997766655555444332 22 34556666667
Q ss_pred HHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 102 GLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 102 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
.+.|++.+...+...+...+..| ++|+++.++.+.....+...++.+.+.+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 304 CVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 78899989999988888877765 6799999999998888888888888888663
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.7e-08 Score=89.05 Aligned_cols=366 Identities=11% Similarity=0.048 Sum_probs=204.7
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhh-----ccCchHH-HHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSA-----HHNRAHV-IALG 77 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~d-----r~G~r~~-~~~~ 77 (502)
.+..+..+.+.+.+.+.-.+... .+|.+.+.-|.|.++.+...-++ ..+ .--++|.++.| |+||||. ++-+
T Consensus 29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay-~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~ 105 (510)
T KOG3574|consen 29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAY-WPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPC 105 (510)
T ss_pred hhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhh-hHH-HHHHHHHhhhHHHHHHhhccccceeeeh
Confidence 34556666777778777777777 78999998888888877543332 222 23467888999 9999996 4444
Q ss_pred HHHHHHHHHHHHhh-----------hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHH
Q 010733 78 AFLWAAATFLVAFS-----------STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLG 146 (502)
Q Consensus 78 ~~l~~~~~~~~~~~-----------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g 146 (502)
..+.+..+.+.+.- ++...+...-++.-+..+....+...+.-....+++-|-+......+...|..++
T Consensus 106 q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~ 185 (510)
T KOG3574|consen 106 QYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLG 185 (510)
T ss_pred HHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhh
Confidence 44444444443321 2333344455667777788888888888888888888888777777777777666
Q ss_pred HHHHHHHHhhcc-----------CCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHH
Q 010733 147 GFCSVLIASTSF-----------MGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLI 215 (502)
Q Consensus 147 ~~l~~~l~~~~~-----------~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (502)
..+.-.+.+.++ .+...-....+..+.+.++...+..+..++++....+ +....+++..
T Consensus 186 ~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~----------e~~~~i~~~y 255 (510)
T KOG3574|consen 186 NVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDE----------ELELGIHESY 255 (510)
T ss_pred cceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhh----------hhhcCHHHHH
Confidence 554433322110 1111222334444555555555555554444332111 1111234455
Q ss_pred HHhhhhhhhhHHHHHHHHHHhhhhhhhH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhh-cCCCc
Q 010733 216 TDAKMVIKIPTFQIIVAQGVFGSFSGSA-FAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQ-RLPDS 293 (502)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~ 293 (502)
+-.+.+++-|....+.......=..+.. ....+.-+.++|.+...-+++..+ .+..++..++...|+.. ++++.
T Consensus 256 k~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~Gv~ke~Lal~~v~----~~plqI~l~~~~gk~ta~~~pl~ 331 (510)
T KOG3574|consen 256 KLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEHGVPKEELALIAVP----LVPLQIALPLYIGKWTAGPRPLN 331 (510)
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHcCCChhHheeeeee----hhhHHHhhhhhheeecCCCCcch
Confidence 5556666666665555555444444433 345666677899999887665533 33344444444444322 11111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCCc-------hHHHHHH-HHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhH
Q 010733 294 GRVILSQISAASVIPTAAVLLLVLPDDPS-------TAFLHGL-ALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYAL 365 (502)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 365 (502)
.-......-+..+.+-..+ ....+.... ...++.+ ...+.+...-..+. ..++..++..+|...|+.+.+
T Consensus 332 ~~lka~~~R~~~~~~~t~L-v~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv-~~maf~aqisdp~iggTymTl 409 (510)
T KOG3574|consen 332 VFLKAVPYRLGGGLVQTAL-VWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFV-SGMAFHAQISDPAIGGTYMTL 409 (510)
T ss_pred HHHHhhhHHHHHHHHHHHH-HhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHH-HHHHHHhhcCCcccCccHHHH
Confidence 0000000111111111111 111111110 1111111 12222222222222 356777889999999999999
Q ss_pred HHhhhhhhhchhHHHHHHHHHHH
Q 010733 366 DQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 366 ~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
.|+..++|+..-..++.++.|..
T Consensus 410 LNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 410 LNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HHHHHHhcCCcHHHHHHHhcccC
Confidence 99999999999999999999875
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-08 Score=98.58 Aligned_cols=150 Identities=18% Similarity=0.160 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHH
Q 010733 7 TLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATF 86 (502)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~ 86 (502)
.+..+.+..++............+++.++.--++...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.+
T Consensus 226 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~ 305 (428)
T PF13347_consen 226 PFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFL 305 (428)
T ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHH
Confidence 45556666777777777777777777666433446788899999999999999999999999999999999999999999
Q ss_pred HHHhhh--hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCc-------ccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 87 LVAFSS--TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDE-------TNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 87 ~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
+..+.+ |.+.+++.-++.|++.+...+...++++|..+. ++.|...+.......+|..+++.+.+.+.+.
T Consensus 306 ~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 306 LLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred HHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999886 999999999999999999999999999999873 3358889999999999999999998887764
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-07 Score=92.59 Aligned_cols=169 Identities=15% Similarity=0.078 Sum_probs=130.0
Q ss_pred HHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhh---
Q 010733 16 IMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSS--- 92 (502)
Q Consensus 16 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~--- 92 (502)
.....+..........+-++-|++..+.-++.....+...+..+.+..+.||+|||+.++.+..++.+..+++....
T Consensus 280 ~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~ 359 (485)
T KOG0569|consen 280 AQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLS 359 (485)
T ss_pred HHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555556778888999999999999999999999999999999999999999999999998888776542
Q ss_pred hHH------HHHHHHHHHHhhhh-hhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchh
Q 010733 93 TFF------QVAVSRGLNGIGLA-IVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWR 165 (502)
Q Consensus 93 ~~~------~l~~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~ 165 (502)
+.. ..+++.++..++.+ +..|...-+.+|.+|++.|+.++++......+...+-...-..+.+. .|-
T Consensus 360 ~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~-----~g~- 433 (485)
T KOG0569|consen 360 NSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV-----IGP- 433 (485)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcc-
Confidence 111 12333333333333 24678889999999999999999999999998888877777777765 554
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCc
Q 010733 166 LAFHLVGLISVIVGVLVHVYANDPR 190 (502)
Q Consensus 166 ~~f~~~~~~~~~~~~~~~~~~~~~~ 190 (502)
+.|.+..++..+..+..++..+|++
T Consensus 434 ~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 434 YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 7788888888888888887544444
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.1e-09 Score=95.58 Aligned_cols=119 Identities=20% Similarity=0.168 Sum_probs=89.0
Q ss_pred hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 010733 254 IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFI 333 (502)
Q Consensus 254 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (502)
.+.+...+|++-+.+.+...+.++..|.++||+|||. .+.++.....+....+....+ ...++..=++
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkp-----------vll~c~~~va~s~ll~~~S~~-F~afv~aR~l 130 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKP-----------VLLACLIGVALSYLLWALSRN-FAAFVLARFL 130 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchH-----------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 3445677899999999999999999999999999994 112222222222222222222 2333343567
Q ss_pred HHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHH
Q 010733 334 MGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQ 386 (502)
Q Consensus 334 ~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~ 386 (502)
.|+.-+-..+ ..++++|.+++++|+.+++.++....+|-++||.++|++.+
T Consensus 131 ~Gi~kgnl~v--~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 131 GGIFKGNLSV--IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hhhccCchHH--HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 7877776665 78999999999999999999999999999999999999988
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.2e-08 Score=93.76 Aligned_cols=143 Identities=16% Similarity=0.084 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhc----cCchHH-HHHHHHHHHHH
Q 010733 10 LVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAH----HNRAHV-IALGAFLWAAA 84 (502)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~G~r~~-~~~~~~l~~~~ 84 (502)
.++...+-..+....--...+++.+++|++....+.+--+.-+...+.+|+.|..+|| |||||. +..+.++.+++
T Consensus 36 ~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~ 115 (498)
T KOG0637|consen 36 SVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVS 115 (498)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHH
Confidence 3333333333444443444567788899999988888888888889999999999995 899886 66677788888
Q ss_pred HHHHHhhhhHH-----------------HHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchh-HHHHHHHHHhhhHhHH
Q 010733 85 TFLVAFSSTFF-----------------QVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGM-AFGWLQLTGYLGSVLG 146 (502)
Q Consensus 85 ~~~~~~~~~~~-----------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~g 146 (502)
.++.+++.++. .++++--+.-++.-.....+-+++.|...++++.+ +++.+....++|..+|
T Consensus 116 l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLG 195 (498)
T KOG0637|consen 116 LFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLG 195 (498)
T ss_pred HhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceee
Confidence 88888876553 23344445555666788899999999997776666 9999999999999999
Q ss_pred HHHHHH
Q 010733 147 GFCSVL 152 (502)
Q Consensus 147 ~~l~~~ 152 (502)
..++++
T Consensus 196 Y~~g~y 201 (498)
T KOG0637|consen 196 YALGSY 201 (498)
T ss_pred eecccc
Confidence 998874
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.5e-09 Score=94.35 Aligned_cols=175 Identities=14% Similarity=0.141 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCc------cc----------hHH-HHHHHHHHHHhhhhhhHhhhcc
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPT------GL----------GSL-TLFRSIVQSFCYPLAAYLSAHH 68 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~------~~----------g~~-~s~~~l~~~~~~~~~G~l~dr~ 68 (502)
..++.+++++...+++...+..-+-+..+..+.+.. +. ..- .-+..+.-.-|.++.+++.||+
T Consensus 329 lllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverl 408 (528)
T KOG0253|consen 329 LLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERL 408 (528)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHh
Confidence 445666666666666655555444444443332211 10 111 1123445566788999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHh
Q 010733 69 NRAHVIALGAFLWAAATFLVAFSSTFF----QVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSV 144 (502)
Q Consensus 69 G~r~~~~~~~~l~~~~~~~~~~~~~~~----~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 144 (502)
|||+.|..+.+++++..++...+.+-. +++.+|++. .+.+.+.+.|..|.+|.+-|+...|.-..+.-+|.+
T Consensus 409 GRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi----sg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI 484 (528)
T KOG0253|consen 409 GRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI----SGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGI 484 (528)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH----hchheEEEEecCcccchhhhhcchhhhhhHHhhhhh
Confidence 999999999999999988877665333 234455554 445667778999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcc
Q 010733 145 LGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRC 191 (502)
Q Consensus 145 ~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 191 (502)
+.|+++ ...+ .+-..+..+.+...++.++...++|-+++-
T Consensus 485 ~~p~iA-~~~e------~s~sl~i~vy~~~~ilagIavcffPiEtkG 524 (528)
T KOG0253|consen 485 FSPVIA-MRAE------LSTSLPIFVYGALFILAGIAVCFFPIETKG 524 (528)
T ss_pred hhhHHH-HHhc------cceeehHHHHHHHHHHHHHHheeeeeccCC
Confidence 999998 3333 455667777788888888888888877653
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.4e-08 Score=96.21 Aligned_cols=143 Identities=15% Similarity=0.081 Sum_probs=102.6
Q ss_pred HHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHh--h
Q 010733 14 AAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAF--S 91 (502)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~--~ 91 (502)
..++........+...+++.++.--++...+.+.....+...++.++++++.||+|+|+.+..+.++.++..+...+ .
T Consensus 237 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~ 316 (444)
T PRK09669 237 FNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPP 316 (444)
T ss_pred HHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCc
Confidence 33333333333333334444433223334455666677888889999999999999999998888766654443333 3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCc-------ccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 92 STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDE-------TNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 92 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
++.+.+++..++.|++.+...+...++++|..+. ++.|...+.......+|..+|+.+++.+.+.
T Consensus 317 ~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~ 388 (444)
T PRK09669 317 SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW 388 (444)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777788888999999999999999999998752 2345677888899999999999999998875
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-08 Score=100.70 Aligned_cols=149 Identities=13% Similarity=0.056 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFL 87 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~ 87 (502)
+..+.+..++............+++.+....+....+++.+...++..++.++++++.||+|+|+.+.++..+..++.+.
T Consensus 233 ~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~ 312 (473)
T PRK10429 233 LSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGV 312 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 33444444444444445444555555554445566777777777889999999999999999999999888877766655
Q ss_pred HHh-----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCc-------ccchhHHHHHHHHHhhhHhHHHHHHHHHHh
Q 010733 88 VAF-----SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDE-------TNRGMAFGWLQLTGYLGSVLGGFCSVLIAS 155 (502)
Q Consensus 88 ~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~ 155 (502)
..+ .++.+.+++.-++.|++.+...+...++++|..+. ++.|..++......-+|..+++.+.+++.+
T Consensus 313 ~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 313 LLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 34567777788889999999999999999999652 334558899999999999999999998876
Q ss_pred h
Q 010733 156 T 156 (502)
Q Consensus 156 ~ 156 (502)
.
T Consensus 393 ~ 393 (473)
T PRK10429 393 L 393 (473)
T ss_pred H
Confidence 3
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-08 Score=99.06 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=110.2
Q ss_pred hhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHH
Q 010733 33 GAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFS----------STFFQVAVSRG 102 (502)
Q Consensus 33 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~----------~~~~~l~~~r~ 102 (502)
.+.+|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..-+
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~ 359 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI 359 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence 35689999999999999999999999999999999999999999999999888664311 34445566678
Q ss_pred HHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 103 LNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 103 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
+.+++.+....+...++.+..|+++++...++.+...++|..+++.+++.+.++
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET 413 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999886
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-07 Score=94.19 Aligned_cols=137 Identities=11% Similarity=-0.015 Sum_probs=85.1
Q ss_pred hhhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCC
Q 010733 240 SGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPD 319 (502)
Q Consensus 240 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (502)
.|....+.|.+.+++|++..+.+.+..... ......++.|++.||+|+|+ .+.... ....+......+.....
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~-----vllig~-ll~~iG~ll~ala~~~~ 115 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRP-----IFVLSM-TVFCLGTLLFALTFQEV 115 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHH-----HHHHHH-HHHHHHHHHHHHHhccc
Confidence 344455677766789999999988876633 33356667899999999994 221111 11111111111110000
Q ss_pred CCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHH
Q 010733 320 DPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILA 385 (502)
Q Consensus 320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~ 385 (502)
...+.+.+.+..++.|++.+...+ .....+.+.+| ++||.+.|+......+|+++.+.+...+.
T Consensus 116 i~~s~~~l~l~r~l~G~G~~~~~~-~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~ 179 (591)
T PTZ00207 116 IEGSVVRLSVYNGLMTLGCMLFDL-GAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF 179 (591)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112344455566677887776655 45667788887 67999999999999999987555554444
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-07 Score=90.57 Aligned_cols=126 Identities=12% Similarity=0.082 Sum_probs=95.5
Q ss_pred hHHHHHHHhCCChhH-HHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchH
Q 010733 246 FAAMWLELIGFSHKL-TAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTA 324 (502)
Q Consensus 246 ~~~~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (502)
..|.+.+++|++..+ .|.+...+..+..++.+++|+++||+|.|+ .+.. ..+...+...... + ....
T Consensus 48 a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~-----vL~l-~~l~Wsl~t~L~~---f---a~Sl 115 (511)
T TIGR00806 48 ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP-----VLVL-QALSFVCVWLLLL---L---GTSV 115 (511)
T ss_pred HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH-----HHHH-HHHHHHHHHHHHH---H---HHHH
Confidence 355555589999999 999999999999999999999999999995 1211 1111111111111 1 1234
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHH
Q 010733 325 FLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILA 385 (502)
Q Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~ 385 (502)
..+.+.-++.|++.+.... ...++.+.+|+++|++++|+.+....+|.++++++.+++.
T Consensus 116 ~~L~i~R~llGvaEA~~~A--~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 116 WHMQLMEVFYSVTMAARIA--YSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888774 7889999999999999999999999999999999999943
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.3e-08 Score=101.72 Aligned_cols=133 Identities=13% Similarity=0.070 Sum_probs=100.7
Q ss_pred hHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCC------
Q 010733 246 FAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPD------ 319 (502)
Q Consensus 246 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 319 (502)
.++.+-++++++..+.|++.+.+.++..++.++.+++.||.+||+..... .+.. .+.. ++..+++
T Consensus 55 ~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g------~ll~--~lg~-ll~alphf~~~~y 125 (633)
T TIGR00805 55 SLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIG------CAIM--GLGS-FLLSLPHFLSGRY 125 (633)
T ss_pred hchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEec------HHHH--HHHH-HHHhChHHhcCCc
Confidence 34555557999999999999999999999999999999999998643111 1111 1111 1111110
Q ss_pred ----------------------C--------------------CchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCC
Q 010733 320 ----------------------D--------------------PSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPER 357 (502)
Q Consensus 320 ----------------------~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~ 357 (502)
. ...+..+++.-++.|++.+...+ ...+++.|.+|++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~-~~~~~i~d~~~~~ 204 (633)
T TIGR00805 126 SYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFP-LGISYIDDFAKSK 204 (633)
T ss_pred cccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchh-cCchhhhccCCcc
Confidence 0 01244556778899999998888 8899999999999
Q ss_pred CchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 358 CRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 358 ~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
+|+...|+.+....+|..+|+.++|.+.+..
T Consensus 205 ~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~ 235 (633)
T TIGR00805 205 NSPLYIGILESIAVFGPAFGYLLGSFCLQIY 235 (633)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 9999999999999999999999999988764
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-07 Score=93.49 Aligned_cols=135 Identities=11% Similarity=0.120 Sum_probs=90.7
Q ss_pred HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhh----hhhcCCCchhHHHHHHHHHHHHHHHHHHHhhc--
Q 010733 244 FAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDI----LAQRLPDSGRVILSQISAASVIPTAAVLLLVL-- 317 (502)
Q Consensus 244 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 317 (502)
..+++.|++++|.+....+.+.....+.+++..++.|+++|| +|||++ .+........+.+..+.....
T Consensus 24 ~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp-----~il~g~~~~~~~l~ll~~~~~~~ 98 (477)
T TIGR01301 24 LSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP-----FIAAGAALVAFAVILIGFAADIG 98 (477)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH-----HHHHHHHHHHHHHHHHHhCchhh
Confidence 457888899999999999999999999999999999999994 898853 222111111111111111000
Q ss_pred ---C----CCCchH--HHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCc--hhhHhHHHhhhhhhhchhHHHHHHH
Q 010733 318 ---P----DDPSTA--FLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCR--TSIYALDQSFESIPSSFAPAVVGIL 384 (502)
Q Consensus 318 ---~----~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~~~~i~~~~~g~l 384 (502)
. .....+ +...+.+.+..++.....+ ...+++.|..|+++| +.+.++.+....+|+.+++.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~-p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 99 HLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQG-PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000011 2223334444556655555 568899999998865 5799999999999999999988865
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-07 Score=84.13 Aligned_cols=166 Identities=14% Similarity=0.159 Sum_probs=134.0
Q ss_pred HHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhcc-CchHHHHHHHHHHHHHHHHHHhhhhHH
Q 010733 17 MERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHH-NRAHVIALGAFLWAAATFLVAFSSTFF 95 (502)
Q Consensus 17 ~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-G~r~~~~~~~~l~~~~~~~~~~~~~~~ 95 (502)
+.....++.-.-+|.+..|-|+|..+.|++.+...+.....++....+++|. ++|+..+...+++.++...+.+.+.-.
T Consensus 219 lqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~ 298 (395)
T COG2807 219 LQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQL 298 (395)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3344444444557999999999999999999999999999999999999964 567778888888888888888877443
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhccCc-ccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHH
Q 010733 96 QVAVSRGLNGIGLAIVIPAIQSLVADSTDE-TNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLI 174 (502)
Q Consensus 96 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~ 174 (502)
.++- -++.|+|.|..++.+..++.+..+. ++-++..++.|....+=..+||.+.|++-|.. .+|+..++.....
T Consensus 299 ~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~----gsw~~~~~~l~~~ 373 (395)
T COG2807 299 PILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT----GSWSAPLVLLALA 373 (395)
T ss_pred HHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc----CChHHHHHHHHHH
Confidence 3333 4899999999999999999998854 45567777788777777889999999998863 7899999998888
Q ss_pred HHHHHHHHHhhcc
Q 010733 175 SVIVGVLVHVYAN 187 (502)
Q Consensus 175 ~~~~~~~~~~~~~ 187 (502)
.++..+..+..-+
T Consensus 374 ~i~m~i~Gl~a~r 386 (395)
T COG2807 374 TLLMLIFGLRAGR 386 (395)
T ss_pred HHHHHHHHhhcch
Confidence 8888777766543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-07 Score=80.05 Aligned_cols=312 Identities=14% Similarity=0.189 Sum_probs=167.5
Q ss_pred hhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 010733 26 PGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNG 105 (502)
Q Consensus 26 ~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 105 (502)
+|.+-++-+.++....++|.+.-+..-...++..+.|.++|+.|||+.-+.-++.+.+++ +.-.+++|-.++++|++-|
T Consensus 57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGG 135 (454)
T KOG4332|consen 57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGG 135 (454)
T ss_pred CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhh
Confidence 343444556678888899988888777888888999999999999997554444444332 2334678889999999999
Q ss_pred hhhhhhhhHHHHHH-hhccCcccchhHHHHHH--------HHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHH
Q 010733 106 IGLAIVIPAIQSLV-ADSTDETNRGMAFGWLQ--------LTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISV 176 (502)
Q Consensus 106 ~~~~~~~~~~~~~i-~~~~~~~~r~~~~~~~~--------~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~ 176 (502)
+..+..+.+..++. +|.- ++|+.-.-+.. .+.++-.+++.+.+..+.+.. ..|--.+|-..+.+..
T Consensus 136 iaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~---slGPVAPFdAAacfLa 210 (454)
T KOG4332|consen 136 IATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF---SLGPVAPFDAAACFLA 210 (454)
T ss_pred HHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh---ccCCCCchHHHHHHHH
Confidence 99998888877654 4443 33443222222 223333344444455555431 1455666766555444
Q ss_pred HHHHHHHh-hccCCcccccCCCccCCCCCCcchhhhHHHHHH----hhhhhhhhHHHH-HHHHHHhhhhhhhHH-HhHHH
Q 010733 177 IVGVLVHV-YANDPRCLAKDGTKIDHKPRRPFWADIKDLITD----AKMVIKIPTFQI-IVAQGVFGSFSGSAF-AFAAM 249 (502)
Q Consensus 177 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~ 249 (502)
+...+.+. .-|+-.. +.++ ++..++ .+.+..++...+ -.+..++-...|.+. .|.|.
T Consensus 211 igmAvil~~W~ENygd-ps~~---------------kdlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPa 274 (454)
T KOG4332|consen 211 IGMAVILSSWSENYGD-PSEN---------------KDLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPA 274 (454)
T ss_pred HHHHHHHhhhhhccCC-hhhh---------------HHHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeeccc
Confidence 43333322 2222110 0000 222222 223344444433 333433333333332 35554
Q ss_pred HHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHH-HHHHHHHHHHHhhcCCCCchHHHH
Q 010733 250 WLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISA-ASVIPTAAVLLLVLPDDPSTAFLH 327 (502)
Q Consensus 250 ~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 327 (502)
.-. +.+.+ -|++++.+.++.++|+-+..++..|-..|-.. .+.+...+ ...+.+..+.....+.. .....-
T Consensus 275 Lspn~e~iP---hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~---ymqivf~vs~a~l~Lpilt~~vsP~k-es~~~s 347 (454)
T KOG4332|consen 275 LSPNDEEIP---HGFIFATFMLASMLGSSLASRLLSRSSPKVES---YMQIVFLVSIAALLLPILTSSVSPSK-ESPSES 347 (454)
T ss_pred CCCCcccCC---chhHHHHHHHHHHHhhHHHHHHHhcCCcccch---HHHHHHHHHHHHHHHHHHHhccCCCc-CCchHH
Confidence 432 22222 36777778888888888877776664443211 11111111 11111111111111221 222222
Q ss_pred HHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHH
Q 010733 328 GLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQ 367 (502)
Q Consensus 328 ~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 367 (502)
.+.++.+-.+.|..+| ...-+-.+..|.+.|++.+-++.
T Consensus 348 ~i~F~~~E~cvGlfwP-SimkmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 348 LIGFCLFEACVGLFWP-SIMKMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred HHHHHHHHHHHhhcch-HHHHHHHhhCCHHHHhhhhhhee
Confidence 3455556667777888 67777888899888876655443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.7e-08 Score=92.83 Aligned_cols=164 Identities=19% Similarity=0.144 Sum_probs=141.2
Q ss_pred HHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHH
Q 010733 16 IMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFF 95 (502)
Q Consensus 16 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~ 95 (502)
++.+.........+-.-.||++..+...|........+-++.-++.+++..|+|+-+++..++....+=.+..+...|.|
T Consensus 381 v~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W 460 (618)
T KOG3762|consen 381 VVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPW 460 (618)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCch
Confidence 33344444444444556678888888889888888888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHH-HHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHH
Q 010733 96 QVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQL-TGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLI 174 (502)
Q Consensus 96 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~ 174 (502)
..+..-+++|+..+..+.++.+|+++..||+-|+.+.++.+. ..++|--+|++++|.+.+. ++-|..|.+.++.
T Consensus 461 ~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~-----fg~~ttf~~~giA 535 (618)
T KOG3762|consen 461 MVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER-----FGARTTFRIFGIA 535 (618)
T ss_pred heeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee-----ehhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999765 4579999999999999998 8999999999888
Q ss_pred HHHHHHHHHh
Q 010733 175 SVIVGVLVHV 184 (502)
Q Consensus 175 ~~~~~~~~~~ 184 (502)
+++..++...
T Consensus 536 cl~~l~~~~~ 545 (618)
T KOG3762|consen 536 CLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHH
Confidence 8777666543
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-08 Score=72.10 Aligned_cols=81 Identities=15% Similarity=0.064 Sum_probs=75.9
Q ss_pred HHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 010733 18 ERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQV 97 (502)
Q Consensus 18 ~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l 97 (502)
.++.+..+.+++|.+++|.++|.++.|++.+.+++||.+|.+...++.++..+++.+..+.+...+..+.+++.++++.+
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 46788899999999999999999999999999999999999999999999888999999999999999999999988765
Q ss_pred H
Q 010733 98 A 98 (502)
Q Consensus 98 ~ 98 (502)
.
T Consensus 84 ~ 84 (85)
T PF06779_consen 84 S 84 (85)
T ss_pred h
Confidence 3
|
Note that many members are hypothetical proteins. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.1e-09 Score=99.67 Aligned_cols=127 Identities=14% Similarity=0.158 Sum_probs=99.1
Q ss_pred HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 010733 253 LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALF 332 (502)
Q Consensus 253 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (502)
.++.++...|++...+.+..+++++++|++.||+.|++.+ ..+..+..+..+..... ...+.+.++=.
T Consensus 62 ~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~-----------~vG~~iW~~Av~~~~fs-~~Fwq~~l~R~ 129 (493)
T KOG1330|consen 62 YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVI-----------AVGIFIWTLAVFASGFS-NHFWQVLLCRG 129 (493)
T ss_pred hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEE-----------eeHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4899999999999999999999999999999999999643 11111111111111111 34455667778
Q ss_pred HHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCC
Q 010733 333 IMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 333 ~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
+.|+|.+...+ +..++++|.+|.++|++++++.+....+|+.+|-...+.+.+..+.|.
T Consensus 130 ~vGiGeAs~~~-ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr 188 (493)
T KOG1330|consen 130 FVGIGEASYSP-IAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWR 188 (493)
T ss_pred Hhccchhhhcc-cchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceE
Confidence 89999999998 999999999999999999999999999999999888888777754343
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.7e-06 Score=78.19 Aligned_cols=373 Identities=13% Similarity=0.052 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHhhh--ccCCCccchHHHHHHHHHHHHhhhhhhHhh-----hccCchHHHHH-HHHH
Q 010733 9 VLVNFAAIMERADESMLPGVYKEVGAA--LHTDPTGLGSLTLFRSIVQSFCYPLAAYLS-----AHHNRAHVIAL-GAFL 80 (502)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~-----dr~G~r~~~~~-~~~l 80 (502)
.++.+.+++.+.-.+.....+|.+.++ -+.|.+|.|...-+ ...+. .-++|.++. .|+||||.-++ .-.+
T Consensus 3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l 80 (544)
T PF13000_consen 3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYL 80 (544)
T ss_pred eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHHHH
Confidence 345666777777666655567888888 68888887754321 11111 123444444 48999997433 3344
Q ss_pred HHHHHHHHHhhh----------------------h--HHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHH
Q 010733 81 WAAATFLVAFSS----------------------T--FFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQ 136 (502)
Q Consensus 81 ~~~~~~~~~~~~----------------------~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 136 (502)
.++..+..+... + ...+...-++.=+-.+....+.-.+.-....+++++.+..-..
T Consensus 81 ~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqt 160 (544)
T PF13000_consen 81 SGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQT 160 (544)
T ss_pred HHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHH
Confidence 444443333211 0 1122233333333445555666667777777888877777777
Q ss_pred HHHhhhHhHHHHHHHHHHhhcc-----------CCCcchhHHHHHHHHHHHHHHHHHHhhccCCccccc-C--C----Cc
Q 010733 137 LTGYLGSVLGGFCSVLIASTSF-----------MGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAK-D--G----TK 198 (502)
Q Consensus 137 ~~~~~G~~~g~~l~~~l~~~~~-----------~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~----~~ 198 (502)
.+.++|..++..+--.+.+.++ .+...-..-..+.|...++..+...++.+|++..+. + + .+
T Consensus 161 vG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~ 240 (544)
T PF13000_consen 161 VGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSD 240 (544)
T ss_pred hHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCcccccccccc
Confidence 7777776666555444432110 011122222333455555555555555554322111 0 0 00
Q ss_pred ---cC-----CCC---CCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhHH-HhHHHHHHHhCCChhHHHHHHH
Q 010733 199 ---ID-----HKP---RRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAF-AFAAMWLELIGFSHKLTAFLMT 266 (502)
Q Consensus 199 ---~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~ 266 (502)
++ ++. ..+++.++++..+...++++.|....+++..+..=..+... .-...=+.+.|++.+..+++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlEkG~~KE~LAl~~- 319 (544)
T PF13000_consen 241 GKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLEKGLSKEDLALLV- 319 (544)
T ss_pred ccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHHcCCCHHHhHHHH-
Confidence 00 000 11223345666777778888888887777766655544333 334444558999998865554
Q ss_pred HHHHHHhhhhhhhHhHhhhhhhcCCCc-------------h-------------hHHHHHHHHHH-HHHHHHHHHhhcCC
Q 010733 267 LFVIAFCLGGLFGGKMGDILAQRLPDS-------------G-------------RVILSQISAAS-VIPTAAVLLLVLPD 319 (502)
Q Consensus 267 ~~~~~~~~~~~~~g~l~d~~~~~~~~~-------------~-------------~~~~~~~~~~~-~~~~~~~~~~~~~~ 319 (502)
+..+...++.++++.|+.+.+... . +.++..+..-+ ...+.......++.
T Consensus 320 ---li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~ 396 (544)
T PF13000_consen 320 ---LIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPS 396 (544)
T ss_pred ---HHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCC
Confidence 444555555555555543322200 0 11111111111 11111111222332
Q ss_pred CCc---hHHHHHHHHHHH-HHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 320 DPS---TAFLHGLALFIM-GLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 320 ~~~---~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
+.. ....+++..-++ .+..-..+. ...+.-++..+|..-|+.|.+.|++.++|+..-..+.=++.|..
T Consensus 397 ~g~v~~~Yf~lvI~~~~l~sf~stvmFV-ai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f 468 (544)
T PF13000_consen 397 DGPVPTYYFLLVIIQHVLSSFMSTVMFV-AIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF 468 (544)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence 221 122222222222 222222333 45777788889999999999999999999999998888898885
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.2e-08 Score=80.28 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=77.0
Q ss_pred HHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCc
Q 010733 266 TLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPAT 345 (502)
Q Consensus 266 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (502)
+...++.+++.++.+++.||++||+ ...... ...... .. .... .++ .+......++.|++.+...+ .
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~-----~~~~~~-~~~~~~--~~-~~~~--~~~-~~~~~~~~~~~g~~~~~~~~-~ 71 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKP-----VLLVGL-FIFVLS--TA-MFAL--SSN-ITVLIIARFLQGFGAAFALV-A 71 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhH-----HHHHHH-HHHHHH--HH-HHHH--hcc-HHHHHHHHHHHHHHHHHHHH-h
Confidence 3456778889999999999999985 221111 111111 11 1111 122 33344566777887777666 6
Q ss_pred chhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 346 NNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 346 ~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
...+..|..|+++|+++.++.+....++..++|.+.+.+.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 113 (141)
T TIGR00880 72 GAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF 113 (141)
T ss_pred HHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc
Confidence 788999999999999999999999999999999999998765
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.2e-06 Score=79.69 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=102.9
Q ss_pred HhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchH
Q 010733 245 AFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTA 324 (502)
Q Consensus 245 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (502)
...|.+.+.++.+..+++++...+..+..+.++..+++.+|+|.|+. +...+.+......++.-......+
T Consensus 34 iLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~g---------i~lgL~l~avg~~lF~pAa~~~~y 104 (422)
T COG0738 34 ILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAG---------IVLGLLLYAVGAALFWPAASSKSY 104 (422)
T ss_pred hhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHH---------HHHHHHHHHHHHHHHhhhhhhhhH
Confidence 35777777899999999999999999999999999999999999951 111222222222222111223345
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 325 FLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
..+...+++.+.|.+..-. ....++..+.|++..+.-+.+.+.++.+|++++|.+++.+..+
T Consensus 105 ~~FL~~lFila~Gi~~Let-aaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 105 GFFLVALFILASGIGLLET-AANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred HHHHHHHHHHHhhhHHHHh-ccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 5566778888888888777 7788999999988888889999999999999999999999986
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=87.64 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=131.6
Q ss_pred hccchhhHHH-HhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccC--chHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 010733 22 ESMLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHN--RAHVIALGAFLWAAATFLVAFSSTFFQVA 98 (502)
Q Consensus 22 ~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G--~r~~~~~~~~l~~~~~~~~~~~~~~~~l~ 98 (502)
....-|.++. +.|.+..+..+.|...--..+.+.++..+.|.++||++ |-.....++++.++.+....+++++.++.
T Consensus 286 lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~ 365 (464)
T KOG3764|consen 286 LAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLW 365 (464)
T ss_pred HHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHh
Confidence 3344455554 67778866669999999999999999999999999999 54456677777778888888999999999
Q ss_pred HHHHHHHhhhhhhhhHHHHHHhhccCcc------cchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHH
Q 010733 99 VSRGLNGIGLAIVIPAIQSLVADSTDET------NRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVG 172 (502)
Q Consensus 99 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~ 172 (502)
+-++..|++.+....+.........+.+ -.|...++...++++|..+||.+++.+.+. .|++|.-.+.+
T Consensus 366 vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~-----iGF~wl~~iig 440 (464)
T KOG3764|consen 366 VPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEA-----IGFEWLMTIIG 440 (464)
T ss_pred hhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheee-----hhHHHHHHHHH
Confidence 9999999988887777766666666543 346889999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhh
Q 010733 173 LISVIVGVLVHVY 185 (502)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (502)
+..++.+.+...+
T Consensus 441 ~~n~iyapvl~ll 453 (464)
T KOG3764|consen 441 ILNLIYAPVLLLL 453 (464)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888877654
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.2e-07 Score=91.23 Aligned_cols=130 Identities=19% Similarity=0.236 Sum_probs=99.6
Q ss_pred HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 010733 253 LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALF 332 (502)
Q Consensus 253 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (502)
++.++..+-+++.+....+.+++.+.+|++.||+|.|+.. . ....+......+.-... ....+ .+++.=+
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~-----~--~~~~~sa~~t~l~P~aa--~~~~~-~~~~~R~ 136 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVF-----F--ISGLISALLTLLTPLAA--SIGFY-LLLVLRF 136 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHH-----H--HHHHHHHHHHHHHHHHH--Hhcch-hhHHHHH
Confidence 4788999999999999999999999999999999999521 1 11111111111111111 11112 3456778
Q ss_pred HHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCCC
Q 010733 333 IMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYKP 393 (502)
Q Consensus 333 ~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~~ 393 (502)
+.|++.+...+ ....+..+-.|+++|++..++.....++|.+++-++.|.+.+...|++.
T Consensus 137 lqGl~~g~~~p-a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~s 196 (466)
T KOG2532|consen 137 LQGLGQGVLFP-AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPS 196 (466)
T ss_pred HhHHHHhHHHh-hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCch
Confidence 89999999998 8889999999999999999999999999999999999999998667764
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-06 Score=69.70 Aligned_cols=109 Identities=14% Similarity=0.101 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCc
Q 010733 46 LTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDE 125 (502)
Q Consensus 46 ~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 125 (502)
-.++......+.+++.+.+.+++|.|+.++++.+.+.+-... -+-++.+.++.+-++.|++.+..+++...++.+..++
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 445666677888889999999999999999999999865444 3567888999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHhhhHhHHHHHHHHHHh
Q 010733 126 TNRGMAFGWLQLTGYLGSVLGGFCSVLIAS 155 (502)
Q Consensus 126 ~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~ 155 (502)
++|++-.+++......+.++|.++...+.+
T Consensus 121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 121 ETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999888776654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-06 Score=86.94 Aligned_cols=143 Identities=15% Similarity=0.098 Sum_probs=93.8
Q ss_pred HHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhh-
Q 010733 14 AAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSS- 92 (502)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~- 92 (502)
..++........+....++.+...-++...+.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~ 315 (460)
T PRK11462 236 LTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPM 315 (460)
T ss_pred HHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhch
Confidence 3334434434434444444444433444556777888889999999999999999999987766555444444433332
Q ss_pred -hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccC-------cccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 93 -TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTD-------ETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 93 -~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
+.+.+++.-++.|++.+...+...++++|..+ +++.|...+......-+|..+++.+++.+.+.
T Consensus 316 ~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~ 387 (460)
T PRK11462 316 QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY 387 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344555567788877777777778887765 22235556777788889999999999888764
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-06 Score=82.91 Aligned_cols=148 Identities=19% Similarity=0.196 Sum_probs=102.0
Q ss_pred HHHhhhhhhhHHHhHHHHHH-HhC----CChhHHHHHHHHHHHHHhhhhhhhHhHhhhh-hhcCCCchhHHHHHHHHHHH
Q 010733 233 QGVFGSFSGSAFAFAAMWLE-LIG----FSHKLTAFLMTLFVIAFCLGGLFGGKMGDIL-AQRLPDSGRVILSQISAASV 306 (502)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~-~~g----~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~ 306 (502)
-..=-+.+|+.-..+..|+. +.+ +|+.++.-++..++.-.-+..+++||++||+ |+|+. +.+...
T Consensus 30 E~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t---------I~lGai 100 (498)
T COG3104 30 ELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT---------IVLGAI 100 (498)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH---------HHHHHH
Confidence 33334445677677777776 566 9999998888888877778899999999996 66641 111222
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCC--chhhHhHHHhhhhhhhchhHHHHHHH
Q 010733 307 IPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERC--RTSIYALDQSFESIPSSFAPAVVGIL 384 (502)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~~~~i~~~~~g~l 384 (502)
+...+-..+..+.. .....+.+.+..+++|.|..=+ ....++.|.+|+++ |-.++++..+..++|+.++|.+.+++
T Consensus 101 l~~iGh~~L~~~~~-~~~~gl~i~L~~I~iG~Gl~K~-NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~ 178 (498)
T COG3104 101 LMAIGHLVLAISSV-SGPGGLYIGLALIIVGTGLFKP-NISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLL 178 (498)
T ss_pred HHHHHHHHHhcccc-ccccHHHHHHHHHHhccccccc-cHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHH
Confidence 22222222223220 1122345667777789988887 78899999997543 56688888899999999999999999
Q ss_pred HHHHhcCC
Q 010733 385 AQHVYGYK 392 (502)
Q Consensus 385 ~~~~~~~~ 392 (502)
.++. ++.
T Consensus 179 ~~~~-g~~ 185 (498)
T COG3104 179 AINY-GWH 185 (498)
T ss_pred HHhh-CHH
Confidence 9984 543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4e-06 Score=79.06 Aligned_cols=121 Identities=15% Similarity=0.176 Sum_probs=82.7
Q ss_pred CChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCC--C--chHHHHHHHH
Q 010733 256 FSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDD--P--STAFLHGLAL 331 (502)
Q Consensus 256 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~ 331 (502)
+++...+.+.....++.++|+++.|++.||+|||+.. .. .+.+ +.+..+ ....+.. + .....+...=
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vY-----G~--~liI-mIi~t~-~~~~s~~~~~~~~~m~~L~~~R 151 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVY-----GK--ELII-MIICSA-LSGLSVGTTSPLGVMMTLCFFR 151 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh-----hH--HHHH-HHHHHH-HhccCCCCCCCcchhhHHHHHH
Confidence 5566778888899999999999999999999999632 11 1111 111111 1222221 1 2233344455
Q ss_pred HHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHH
Q 010733 332 FIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQ 386 (502)
Q Consensus 332 ~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~ 386 (502)
+++|+|.|.-+| ...++++|....+.||+-.+...+++.+|...|..++-.+..
T Consensus 152 ~~LGiGIGGDYP-lSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~ 205 (538)
T KOG0252|consen 152 FLLGIGIGGDYP-LSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSA 205 (538)
T ss_pred HHhhccccCCCc-chHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHH
Confidence 688999999999 899999999999999999888888887766665555444433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-05 Score=75.16 Aligned_cols=176 Identities=18% Similarity=0.155 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhh-ccCchHHHHHHHHHHHHHH
Q 010733 7 TLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSA-HHNRAHVIALGAFLWAAAT 85 (502)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~d-r~G~r~~~~~~~~l~~~~~ 85 (502)
.+..+++..+....+..++- |+=.+-||.+..|...++.....|..++....|++.. |.++|+.-.+++.+.+++.
T Consensus 213 f~~fl~l~t~a~~~QD~iLE---Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f 289 (403)
T PF03209_consen 213 FFVFLFLGTLAFFMQDVILE---PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAF 289 (403)
T ss_pred HHHHHHHHHHHHHhhHHHcC---CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 33444444444333333322 3345668999999999999999999999999998888 7888888888888888777
Q ss_pred HHHHh---hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhc----c
Q 010733 86 FLVAF---SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTS----F 158 (502)
Q Consensus 86 ~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~----~ 158 (502)
.+..+ ..+.+.+...-++.|++.|.+.....+...+..++++.|..+|.+.+...++..++..+++.+.+.. .
T Consensus 290 ~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~ 369 (403)
T PF03209_consen 290 ALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFG 369 (403)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 76544 4578899999999999999999999999999999999999999999999999999999999887631 1
Q ss_pred -CCCcchhHHHHHHHHHHHHHHHHHHhh
Q 010733 159 -MGIPGWRLAFHLVGLISVIVGVLVHVY 185 (502)
Q Consensus 159 -~~~~~w~~~f~~~~~~~~~~~~~~~~~ 185 (502)
+...++-.+|.+.++..++...+...+
T Consensus 370 ~~~~~aY~~VF~lEa~ll~~a~~ll~~l 397 (403)
T PF03209_consen 370 NSPALAYGVVFALEAVLLLAALVLLGRL 397 (403)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234578888988888776666655443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.1e-06 Score=73.10 Aligned_cols=135 Identities=17% Similarity=0.220 Sum_probs=86.1
Q ss_pred hhhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCC
Q 010733 240 SGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPD 319 (502)
Q Consensus 240 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (502)
.|.+..|.|..-+++|+|+.+...+.....++..+| ++.|.+.|++|.+. ............-....+....
T Consensus 18 ~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~-------~l~iG~~~~~~GY~~~~l~~~~ 89 (250)
T PF06813_consen 18 TYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWV-------VLLIGAVLGFVGYGLLWLAVSG 89 (250)
T ss_pred ccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHH-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 455566778877789999999999999999998774 88899999999882 1111111111111111111111
Q ss_pred --CCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHH
Q 010733 320 --DPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGIL 384 (502)
Q Consensus 320 --~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l 384 (502)
...+.+.+.+..++.+.+..+... .......+.+| ++||++.|+.-....+++.+-..+...+
T Consensus 90 ~i~~~~~~~~~~~~~l~~~s~~~~~t-a~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 90 RIPSLPVWLMCLFLFLGGNSSCWFNT-ASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred ccCccchHHHHHHHHHHcccHHHhhh-HHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHH
Confidence 123344454555555566555444 34445557787 5799999999998888777766655444
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-06 Score=84.17 Aligned_cols=158 Identities=14% Similarity=0.032 Sum_probs=111.4
Q ss_pred HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 010733 253 LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALF 332 (502)
Q Consensus 253 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (502)
+.++...+.+.+.+.+.++.+++.+.++.+.||++..+ ....+.++...+.++... ..+...+++.-+
T Consensus 75 dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~----------~l~~~~~~w~~~~~~~~~--~~s~~~~ialr~ 142 (495)
T KOG2533|consen 75 DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSK----------GLSVSGILWGLFGFLTAA--VHSFPGLIALRF 142 (495)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHH----------HHHHHHHHHHHHHHHHHH--HhhhHHHHHHHH
Confidence 56677788899999999999999999999999998543 111122222222211111 123444667788
Q ss_pred HHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCCCCCCCCCCcchhhhhhhchH
Q 010733 333 IMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAA 412 (502)
Q Consensus 333 ~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (502)
+.|+..+...| ....++...+.+++|+.-+|+.++...+|+++|+.+...+.+..++....
T Consensus 143 llGl~es~~wP-~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~------------------ 203 (495)
T KOG2533|consen 143 LLGLFESGGWP-GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA------------------ 203 (495)
T ss_pred HHHHHhcccch-HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC------------------
Confidence 99999999999 88899999999999999999999999999999999998876643221110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Q 010733 413 SLAKAIYAAMSIPMAICCIIYSFLYCSYPNDRG 445 (502)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (502)
+ .-+.+.+..++.++..++.++..|....
T Consensus 204 g----W~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 204 G----WRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred C----ceeehhHHHHHHHHHHheEEEEecCChh
Confidence 1 1134555556666666666666666544
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00019 Score=72.31 Aligned_cols=175 Identities=18% Similarity=0.231 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHHHHHHhh-ccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhc-cCchHHHHHHHHHHH
Q 010733 5 TLTLVLVNFAAIMERADE-SMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAH-HNRAHVIALGAFLWA 82 (502)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~G~r~~~~~~~~l~~ 82 (502)
|+....+.....++.+.. .....++.++.+++|.+...+.-..+.+.-......+.++.++|- +||-+++.++.++..
T Consensus 36 ~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~ 115 (571)
T KOG1237|consen 36 WLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISL 115 (571)
T ss_pred hHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444433443344444333 345677889999999988888888888888888888999999997 588889999999998
Q ss_pred HHHHHHHhhhhH-------------------------HHHHHHHHHHHhhhhhhhhHHHHHHhhccC---cc---cchhH
Q 010733 83 AATFLVAFSSTF-------------------------FQVAVSRGLNGIGLAIVIPAIQSLVADSTD---ET---NRGMA 131 (502)
Q Consensus 83 ~~~~~~~~~~~~-------------------------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~---~r~~~ 131 (502)
+|..+..++... ..++.+.-+..+|.|+.-|...+.-+|-++ ++ .+...
T Consensus 116 ~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~f 195 (571)
T KOG1237|consen 116 LGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSF 195 (571)
T ss_pred HHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccc
Confidence 887665543211 256667777888999999999999999998 32 23477
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHh
Q 010733 132 FGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHV 184 (502)
Q Consensus 132 ~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 184 (502)
+.++....+.|..++..+..++.++ .+|.+.|.+..+...++.++.+.
T Consensus 196 FnW~yf~~~~g~l~a~t~~vyiq~~-----~~w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 196 FNWFYFSQNGGALLAQTVLVYIQDN-----VGWKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhc-----ccceeeccHHHHHHHHHHHHHHc
Confidence 8899999999999999998888777 89999999988877766665543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.4e-06 Score=82.02 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=76.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHH
Q 010733 247 AAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFL 326 (502)
Q Consensus 247 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (502)
++...++.|-++ ...++.....++..++.++.|+++|.+|||+. ......+..+........ .+...
T Consensus 67 l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~-----------~i~g~~l~vvG~Iv~atA-~~~~~ 133 (599)
T PF06609_consen 67 LPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYF-----------FIIGSLLGVVGSIVCATA-QNMNT 133 (599)
T ss_pred HHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHhcchHH-----------HHHHHHHHHhHHHHhhcC-CcHHH
Confidence 455555788764 45577778889999999999999999999951 112222222222212222 23334
Q ss_pred HHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHH
Q 010733 327 HGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGIL 384 (502)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l 384 (502)
++....+.|++.+.... ....++|..|.+.|..+.++.....-....+++.+...+
T Consensus 134 ~iag~~l~GvgaG~~~~--~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 134 FIAGMVLYGVGAGVQEL--AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred HHHHHHHHHHhhHHHHH--HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence 56677778888766654 566689999999998777666544333334445544433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.8e-05 Score=75.15 Aligned_cols=177 Identities=17% Similarity=0.157 Sum_probs=120.5
Q ss_pred hHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010733 242 SAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDD 320 (502)
Q Consensus 242 ~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (502)
....|+..|.. ..|.++..+|.++.+.-+...+.-++.|.++||..+|+... |-++.....-.++ ...+.+..++.
T Consensus 30 ~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Grf-RP~lL~g~ip~~i--~~~l~F~~p~~ 106 (467)
T COG2211 30 IVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRF-RPWLLWGAIPFAI--VAVLLFITPDF 106 (467)
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccc-cHHHHHHhHHHHH--HHHHHHcCCCc
Confidence 34457887777 59999999999999999999999999999999876544332 2232222222222 12222222211
Q ss_pred --CchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccC-CCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCCCCCCC
Q 010733 321 --PSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVP-ERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYKPIPQD 397 (502)
Q Consensus 321 --~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~~~~~~ 397 (502)
........+...+.+++...... ...++..+..+ +++|.+..+.-..+..+|+.+...+.+.+....++.+.
T Consensus 107 ~~~~k~~ya~vtY~l~~l~YT~vni-Py~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~---- 181 (467)
T COG2211 107 SMTGKLIYALVTYMLLGLGYTLVNI-PYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDK---- 181 (467)
T ss_pred ccCcchHHHHHHHHHHHHHHHheeC-chhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----
Confidence 23344455667778888888777 67788888875 57899999999999999999999999999888644321
Q ss_pred CCCcchhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 010733 398 ASNSVEIETDRENAASLAKAIYAAMSIPMAICCIIYSFLYCSYPND 443 (502)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (502)
..++.....+..+++++..+++++..+|+
T Consensus 182 -----------------~~g~~~~~~~~~vi~~i~~l~~~~~v~ER 210 (467)
T COG2211 182 -----------------ALGYQGTALVLGVIGVILLLFCFFNVKER 210 (467)
T ss_pred -----------------hhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 23455556666666666666666655443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.9e-06 Score=61.35 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHH
Q 010733 10 LVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLW 81 (502)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~ 81 (502)
.+...+++.+.....+.|.+|...++.|.++.|+|.+.++..+...++.+++|.++||+++++.++....++
T Consensus 4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 4 PLKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 345567777777888888889999999999999999999999999999999999999999999877665543
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.8e-05 Score=69.15 Aligned_cols=355 Identities=10% Similarity=0.028 Sum_probs=203.0
Q ss_pred CcchHHHHHHHHHHHHHHHhhccchhhHHHHh-hhccCCCccch-HHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHH
Q 010733 2 KSETLTLVLVNFAAIMERADESMLPGVYKEVG-AALHTDPTGLG-SLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAF 79 (502)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~g-~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~ 79 (502)
+...++..++|+-.+..-+ +-.-+.+.|++. .+.|++..|+. -+.-.-.-.+.+.-.+.=.+.|-.-.|++++.-.+
T Consensus 2 ~~W~~~~~llC~yG~~~e~-RPseP~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~l 80 (433)
T KOG3810|consen 2 KSWLKITCLLCLYGFVREF-RPSEPYLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQAL 80 (433)
T ss_pred cchhhhhhhhhhhhHHHHh-CCCCCccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeecc
Confidence 3333555555554444332 333444455554 45566655432 23333344456666667788999988999888888
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccC
Q 010733 80 LWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFM 159 (502)
Q Consensus 80 l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 159 (502)
.......+.-+.++.+.+=+.-++.|...+ ...+-++++-+..+|+++.++.+...+..-.|-..|..++-.+....
T Consensus 81 s~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~-- 157 (433)
T KOG3810|consen 81 SGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLE-- 157 (433)
T ss_pred chhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhc--
Confidence 888888888899999999999999999765 56788899999999999999999999999999999999998887641
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccCCccc---ccCCCcc----CCCCCCcchh-----hhHHHHHHhhhhhhhhHH
Q 010733 160 GIPGWRLAFHLVGLISVIVGVLVHVYANDPRCL---AKDGTKI----DHKPRRPFWA-----DIKDLITDAKMVIKIPTF 227 (502)
Q Consensus 160 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 227 (502)
..+....-.+.-....+...+.+++|+.++.. +.+.+.. ++...+.+.. .....+++...-.++|..
T Consensus 158 -~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~l 236 (433)
T KOG3810|consen 158 -TLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRL 236 (433)
T ss_pred -ccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchh
Confidence 13444444444333344444555565544221 1111110 0011111111 122234455556667766
Q ss_pred HHHHHHHHhhhh-hhhHHHhHHHHHHHhC--CChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHH
Q 010733 228 QIIVAQGVFGSF-SGSAFAFAAMWLELIG--FSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAA 304 (502)
Q Consensus 228 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g--~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 304 (502)
....+-..+..+ .+-+.+|....-++.. -.....|..-+...+.+.++.+..|.+--+..|.. ..++. ..
T Consensus 237 l~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g----~~ll~---~~ 309 (433)
T KOG3810|consen 237 LKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWG----DLLLA---VG 309 (433)
T ss_pred hhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhh----HHHHH---HH
Confidence 555444444444 3455556555555432 12223355556667777777888887765544442 11211 11
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhh
Q 010733 305 SVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESI 372 (502)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 372 (502)
. ..-+++++ ......+.|+ ..+...+.........+ +...-+++....+.-|-.+|+..++.-+
T Consensus 310 s-~~~agllf-~m~~t~~Iw~-~Ya~yvlfr~~y~l~it-iA~~~iA~nL~~e~~gLvFGiNTFvAl~ 373 (433)
T KOG3810|consen 310 S-AVQAGLLF-IMAQTQHIWV-CYAGYVLFRVIYQLTIT-IATFQIARNLSSELFGLVFGINTFVALI 373 (433)
T ss_pred H-HHhhhhhh-hhhcccceeh-hhhhHHHHHhhHhhhhh-HHHHHHHHhhhhhhheeeeehHHHHHHH
Confidence 1 22222222 2223333333 33445555555555554 3444445555667778888877655443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0064 Score=60.19 Aligned_cols=278 Identities=11% Similarity=0.081 Sum_probs=149.1
Q ss_pred hHHHHHHHHHHHHHHHhhccchhhHHHHhhhccC---CCccchHHHHHHHH-HHHHhhhhhhHhhhccCchHHHHHHHHH
Q 010733 5 TLTLVLVNFAAIMERADESMLPGVYKEVGAALHT---DPTGLGSLTLFRSI-VQSFCYPLAAYLSAHHNRAHVIALGAFL 80 (502)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---s~~~~g~~~s~~~l-~~~~~~~~~G~l~dr~G~r~~~~~~~~l 80 (502)
++-+..+.+..|+..+..+.. ..+.+.+=+ ++..+..+-....+ ...+...+..++++|+++.+++-+....
T Consensus 23 ~~k~~~l~~m~f~i~f~y~~l----R~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~ 98 (491)
T PF03219_consen 23 LKKFLPLALMFFFILFNYTIL----RDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIP 98 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344556666666666655543 334444322 44445555554445 3445577889999999999998777777
Q ss_pred HHHHHHHHHhh--h-----------------------------hHHHHHHHHHHHHhhhhhhhh-HHHHHHhhccCcccc
Q 010733 81 WAAATFLVAFS--S-----------------------------TFFQVAVSRGLNGIGLAIVIP-AIQSLVADSTDETNR 128 (502)
Q Consensus 81 ~~~~~~~~~~~--~-----------------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r 128 (502)
+.....+.++. | +.|...+.-+..-+-.....+ .-..+..|.++.+|-
T Consensus 99 F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eA 178 (491)
T PF03219_consen 99 FLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEA 178 (491)
T ss_pred HHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 66666666553 0 122233333333333233333 457889999999999
Q ss_pred hhHHHHHHHHHhhhHhHHHHHHHHHHh----hccCCCcchhHHHHHHH----HHHHHHHHHHHhhccCCcccccCCCccC
Q 010733 129 GMAFGWLQLTGYLGSVLGGFCSVLIAS----TSFMGIPGWRLAFHLVG----LISVIVGVLVHVYANDPRCLAKDGTKID 200 (502)
Q Consensus 129 ~~~~~~~~~~~~~G~~~g~~l~~~l~~----~~~~~~~~w~~~f~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (502)
.|..+++..+.++|.++++.+..++.+ ....+...|...+.... +.+++...+...+.+.....+...+..+
T Consensus 179 KRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~~~~ 258 (491)
T PF03219_consen 179 KRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYPSAK 258 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchhhh
Confidence 999999999999999999999888887 11112245665443222 2222222222222221111111000001
Q ss_pred CCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhHH-HhHHHHHHHhCCChhH----HHHHHHHHHHHHhhh
Q 010733 201 HKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAF-AFAAMWLELIGFSHKL----TAFLMTLFVIAFCLG 275 (502)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~----~~~~~~~~~~~~~~~ 275 (502)
.+++++.+ .......+.++++|.+..+.+..+......... ...-..+++.--++.+ .|-.....++..++.
T Consensus 259 ~~kk~k~k---~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~ 335 (491)
T PF03219_consen 259 KKKKKKPK---MSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIM 335 (491)
T ss_pred cccccCCC---ccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 223344566777887777666555544432222 1122222222122222 233444556666666
Q ss_pred hhhhHhHhhhhhhc
Q 010733 276 GLFGGKMGDILAQR 289 (502)
Q Consensus 276 ~~~~g~l~d~~~~~ 289 (502)
.++++.+.+|+|-+
T Consensus 336 ~~l~~~iir~~GW~ 349 (491)
T PF03219_consen 336 MFLSSNIIRRFGWR 349 (491)
T ss_pred HHHHHHHHHHhhHH
Confidence 67778888888766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.6e-05 Score=77.96 Aligned_cols=174 Identities=12% Similarity=0.044 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHH
Q 010733 10 LVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVA 89 (502)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~ 89 (502)
.+.+..+-............+.+-+..|.+... .+...+......++..++..+.||+|||+.++.+...+.++.++.+
T Consensus 299 ~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~ 377 (513)
T KOG0254|consen 299 GLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILA 377 (513)
T ss_pred HHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHH
Confidence 344444444455555666677788888776544 5555566666777778889999999999999999999999999887
Q ss_pred hhhhH-------------HHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 90 FSSTF-------------FQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 90 ~~~~~-------------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
..... ..+...-+.......+..+....+.+|.+|.+-|+++.++......+...+-........+.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~ 457 (513)
T KOG0254|consen 378 VVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEA 457 (513)
T ss_pred HHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65322 11222222222222334455557889999999999999988877776665554443344332
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHH-HHHhhccCC
Q 010733 157 SFMGIPGWRLAFHLVGLISVIVGV-LVHVYANDP 189 (502)
Q Consensus 157 ~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~~~~ 189 (502)
.++...|...+....+... ..+++.+|+
T Consensus 458 -----~~~~~~f~~f~~~~~~~~~~fv~~~~pET 486 (513)
T KOG0254|consen 458 -----LGIGGTFGYFGGICLLSLIIFVFFFVPET 486 (513)
T ss_pred -----ccccchHHHHHHHHHHHHHHHheEEcccC
Confidence 2345666666666666655 344443333
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.7e-08 Score=96.91 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 010733 259 KLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCM 338 (502)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 338 (502)
.+.++..+...++.++|.++.|++.||+|||+.. ........ ....+........+...+.+.-++.|++.
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~--------~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~R~~~G~~~ 116 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPAL--------IISALLMI-IGSILIAFAPSYNNFWMLLIGRFLIGFGI 116 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccccc--------cccccccc-ccccccccccccccccccccccccccccc
Confidence 4567888899999999999999999999999643 11111111 11111112211123444556677889999
Q ss_pred hcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHH
Q 010733 339 SWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVG 382 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g 382 (502)
+...+ ....++.|..|++.|+...++.+....+|..++..+.-
T Consensus 117 g~~~~-~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~ 159 (451)
T PF00083_consen 117 GGAYV-VSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGY 159 (451)
T ss_pred ccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 98888 88999999999999999999999888877777766543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.7e-06 Score=83.20 Aligned_cols=120 Identities=21% Similarity=0.230 Sum_probs=91.3
Q ss_pred HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 010733 253 LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALF 332 (502)
Q Consensus 253 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (502)
....+.....+..+.+.++.++|.++.|.++||+|||+. ... +..+..+.. ..... .++...+.++=+
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~-----~~~--~~~~~~i~~----~~~a~-a~~~~~~~~~Rf 179 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPV-----LLV--SLLLFIIFG----ILTAF-APNYWMFLIFRF 179 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHH-----HHH--HHHHHHHHH----HHHHH-hCcHHHHHHHHH
Confidence 456677788888999999999999999999999999941 111 111111111 11111 234555777888
Q ss_pred HHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHH
Q 010733 333 IMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQ 386 (502)
Q Consensus 333 ~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~ 386 (502)
+.|++.+.... ....+..|..++++|+.+..+ ..+...++.++++..+++..
T Consensus 180 l~G~~~~~~~~-~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~ 231 (521)
T KOG0255|consen 180 LSGFFGSGPLT-VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR 231 (521)
T ss_pred HHHhhccchhH-HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 89999988888 889999999999999999999 88888899999999888877
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00039 Score=65.63 Aligned_cols=361 Identities=11% Similarity=-0.038 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHH---
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWA--- 82 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~--- 82 (502)
.+..+.++..+-.....+.+....+++.+++-.++. .-...+.+.+...+..++...+--+...|.-..++..++.
T Consensus 18 ~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~i 96 (406)
T KOG1479|consen 18 LVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAI 96 (406)
T ss_pred cHHHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555666777777888888754444 3334444444444444444444433333322222222211
Q ss_pred HHHHHHHhh---------hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHH
Q 010733 83 AATFLVAFS---------STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLI 153 (502)
Q Consensus 83 ~~~~~~~~~---------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 153 (502)
+..+.+.++ ..++..++.-++.|++.|......+...++ +|+|. +.-...+.++++++..++.-..
T Consensus 97 l~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~y----tqavm~G~a~aG~l~Sl~~i~t 171 (406)
T KOG1479|consen 97 LFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEY----TQAVMSGQALAGTLTSLLRILT 171 (406)
T ss_pred HHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHH----HHHHHhcchhHhHHHHHHHHHH
Confidence 112222222 255667777888899988888888887766 45443 2333444444444444332222
Q ss_pred HhhccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccC-----CCCCCcchhhhHHHHHHhhhhhhhhHHH
Q 010733 154 ASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKID-----HKPRRPFWADIKDLITDAKMVIKIPTFQ 228 (502)
Q Consensus 154 ~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (502)
.....+...+=..-|.+..++.+++.+....+++.|-.+..+++..+ .+++.+.+.+.++.....+.++++
T Consensus 172 ka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf~~yy~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~k---- 247 (406)
T KOG1479|consen 172 KAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLPFVRYYREKAGSIGSKLAAEGIESDSSLSNEDDSLWDIFKK---- 247 (406)
T ss_pred HHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcchHHHHHhhhcccccccccccccccccccccccchHHHHHHH----
Confidence 11111122222333444444444444444445554422111111100 000111111111100022222221
Q ss_pred HHHHHHHhhhhhh-hHHHhHHHHHHH-h---CCChhHHHHHHHH-HHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHH
Q 010733 229 IIVAQGVFGSFSG-SAFAFAAMWLEL-I---GFSHKLTAFLMTL-FVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQIS 302 (502)
Q Consensus 229 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~---g~s~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 302 (502)
.....+..+..| ......|-+..+ . ..+....-++... +.+...+|.+...++-++- +|+. ......
T Consensus 248 -~~~~~~~i~lvy~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l-----~i~v~l 320 (406)
T KOG1479|consen 248 -IKDLAFNIFLVYFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKL-----TIPVLL 320 (406)
T ss_pred -HHHHhhchheeeeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC-Ccee-----hHHHHH
Confidence 111111111112 222345665542 1 1123333444445 6788888877766655543 3321 111111
Q ss_pred HHHHHHHHHHHHhh-cCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHH
Q 010733 303 AASVIPTAAVLLLV-LPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVV 381 (502)
Q Consensus 303 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~ 381 (502)
=.+.+++..++-.. .+..-...+.......++|+..|.... ..+.++.+..|++++..+ |....+.-.+|.....+.
T Consensus 321 R~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts-l~m~~aPk~v~~~e~e~a-G~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 321 RLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS-LIMMYAPKQVKPSEKEAA-GNLMVFFLVGGLALGSLL 398 (406)
T ss_pred HHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh-heehhcCCCCChHHHHHH-HHHHHHHHHHHHHHhhHH
Confidence 12222222211100 000111222345667788888888877 778888888887766544 444444444444444444
Q ss_pred HHHH
Q 010733 382 GILA 385 (502)
Q Consensus 382 g~l~ 385 (502)
+++.
T Consensus 399 s~l~ 402 (406)
T KOG1479|consen 399 SWVF 402 (406)
T ss_pred HHHH
Confidence 4443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.9e-05 Score=73.06 Aligned_cols=108 Identities=21% Similarity=0.344 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcc---cchhHHHHHHHHH
Q 010733 72 HVIALGAFLWAAATFLVAFSS---------TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDET---NRGMAFGWLQLTG 139 (502)
Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 139 (502)
|+++++.+++.+|.++..++. +.+.++++-++.++|.|+.-|...++.+|.++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 678889999999999855442 2357888999999999999999999999999865 4677888999999
Q ss_pred hhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHh
Q 010733 140 YLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHV 184 (502)
Q Consensus 140 ~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 184 (502)
++|..++..+.+++.++ .+|.+.|.+.++..++..+..+.
T Consensus 82 n~G~~~~~~~~~~i~~~-----~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQN-----YGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHC-----S-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccc-----cchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999999987 99999999988877766665443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.018 Score=55.62 Aligned_cols=274 Identities=11% Similarity=0.053 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhhccC---CCccchHHHHHHHH-HHHHhhhhhhHhhhccCchHHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKEVGAALHT---DPTGLGSLTLFRSI-VQSFCYPLAAYLSAHHNRAHVIALGAFLW 81 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---s~~~~g~~~s~~~l-~~~~~~~~~G~l~dr~G~r~~~~~~~~l~ 81 (502)
.-+..+.+..++..+..+. +-.+.+.+.+ ++..+.++-+..-+ +..+..++.+++.+++.+.+++-+-+..+
T Consensus 27 ~kflpl~Ll~f~I~~ny~~----lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F 102 (509)
T COG3202 27 KKFLPLALLFFCILFNYNL----LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFF 102 (509)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3444555555555554444 3445666644 45566777777777 67788899999999999999988888888
Q ss_pred HHHHHHHHhhh---------h-----------------------HHHHHHHHHHHHhhhhhhhh-HHHHHHhhccCcccc
Q 010733 82 AAATFLVAFSS---------T-----------------------FFQVAVSRGLNGIGLAIVIP-AIQSLVADSTDETNR 128 (502)
Q Consensus 82 ~~~~~~~~~~~---------~-----------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r 128 (502)
....+++++.- + .|...+..++.=+=...... .-.....|.+..+|-
T Consensus 103 ~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~ea 182 (509)
T COG3202 103 LGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEA 182 (509)
T ss_pred HHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 77777777641 1 12222222222222222222 456777888888899
Q ss_pred hhHHHHHHHHHhhhHhHHHHHHHHHHhhccC-----CCcchhHHHHHHHHHHHHHHHHHHhhc----cCCcccccCCCcc
Q 010733 129 GMAFGWLQLTGYLGSVLGGFCSVLIASTSFM-----GIPGWRLAFHLVGLISVIVGVLVHVYA----NDPRCLAKDGTKI 199 (502)
Q Consensus 129 ~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~-----~~~~w~~~f~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 199 (502)
.|..++++.+.+++..++..+..++.++... .+...+..+.+.+..++++..+.+++- ++|+...+..+++
T Consensus 183 kRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~kk 262 (509)
T COG3202 183 KRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKK 262 (509)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhccc
Confidence 9999999999999999999999888763100 001244555555555555555444432 3333221111111
Q ss_pred CCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhHH--HhHHHHHHHhCCChhHH---HHHHHHHHHH-Hh
Q 010733 200 DHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAF--AFAAMWLELIGFSHKLT---AFLMTLFVIA-FC 273 (502)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~s~~~~---~~~~~~~~~~-~~ 273 (502)
+.++.+ -......+.+.++|..+.+.+..++........ .|-...-+.+-...... |.+....++. .+
T Consensus 263 ~~~k~k------~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v 336 (509)
T COG3202 263 KKKKLK------LGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLV 336 (509)
T ss_pred cccccc------CcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHH
Confidence 111111 122344556667777666655554444322111 12222222222222222 2233344444 34
Q ss_pred hhhhhhHhHhhhhhhc
Q 010733 274 LGGLFGGKMGDILAQR 289 (502)
Q Consensus 274 ~~~~~~g~l~d~~~~~ 289 (502)
+...+++.+.+|.|-.
T Consensus 337 ~~~~~~s~~ir~~GW~ 352 (509)
T COG3202 337 VFLFPGSNLIRRVGWF 352 (509)
T ss_pred HHHhhhHHHHHHhhHH
Confidence 4455667777776654
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00014 Score=71.48 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHhhccch-hhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhh-HhhhccCchHHHHHHHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLP-GVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAA-YLSAHHNRAHVIALGAFLWAAAT 85 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G-~l~dr~G~r~~~~~~~~l~~~~~ 85 (502)
+.++....+....+..-.. ...-+....++++..+.+...+...+...+++++.. .+...+|-|+++..|++.-.+..
T Consensus 243 l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~ 322 (463)
T KOG2816|consen 243 LLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQL 322 (463)
T ss_pred hHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHH
Confidence 3334444444444433222 223345677999999999999888888888888776 88888999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHh
Q 010733 86 FLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAS 155 (502)
Q Consensus 86 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~ 155 (502)
...+++++.|+.+...++.++. ....|+..+.++.+.+++++|+++++......+...++|.+-+.+..
T Consensus 323 ~~~af~~~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 323 LLFAFATETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred HHHHHhccchhhhHHHHHHHhh-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999999999998888875 67889999999999999999999999999999999999999887765
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.7e-05 Score=74.56 Aligned_cols=128 Identities=13% Similarity=0.112 Sum_probs=87.1
Q ss_pred HHHHH--hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhh-cCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCc-hH
Q 010733 249 MWLEL--IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQ-RLPDSGRVILSQISAASVIPTAAVLLLVLPDDPS-TA 324 (502)
Q Consensus 249 ~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 324 (502)
.|+++ .+-+.+..|+..+...++..+++++.|+...|.+. |++. +...+...++.++.+.....++ ..
T Consensus 59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl--------i~s~ii~~~g~llY~~l~~~~~~~~ 130 (488)
T KOG2325|consen 59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL--------IVSFLIAIIGNLLYLALAYVPNGVK 130 (488)
T ss_pred hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH--------HHHHHHHHHHHHHHHHHHhcccchH
Confidence 44454 78888899999999999999999999999999875 4332 1122222222233322222222 45
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHH
Q 010733 325 FLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQ 386 (502)
Q Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~ 386 (502)
+.++++=++.|++.+.... .-.++++..-.++|.++++..+....+|.++||.+...+..
T Consensus 131 y~mL~~R~l~Gvg~~n~a~--lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~ 190 (488)
T KOG2325|consen 131 YLMLVARILTGVGVGNFAV--LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP 190 (488)
T ss_pred HHHHHHHHHcCcCcccHHH--HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence 5555667777777666554 77888887777889999998888778888888876655443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00087 Score=62.21 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=36.9
Q ss_pred HHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcC
Q 010733 251 LELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRL 290 (502)
Q Consensus 251 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 290 (502)
.+++|++..+.+.++........+...+.|.+.||+|||+
T Consensus 61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~ 100 (354)
T PF05631_consen 61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKK 100 (354)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence 3579999999999999999999999999999999999995
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00087 Score=59.04 Aligned_cols=61 Identities=10% Similarity=0.178 Sum_probs=39.3
Q ss_pred ccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhhc
Q 010733 126 TNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYA 186 (502)
Q Consensus 126 ~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 186 (502)
|+|+....+...+.++|.++....--.-.+.......+|++++.+.+++.++-.++...+-
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifG 62 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFG 62 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677777888888888887765543222111011124799999999888777666665553
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0037 Score=61.37 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHH
Q 010733 325 FLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAV 380 (502)
Q Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~ 380 (502)
+...+..+++|+..|.... ....+..+..++++|..+..+...+-.+|-.+|..+
T Consensus 373 ~~~~~~~~l~gltnGy~~s-~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 373 AYFIILMLLFGFSNGYLGS-LSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHHHHhhhHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345568888998888877 777788888888888777777776666666666554
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00033 Score=49.90 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=45.8
Q ss_pred hHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcC
Q 010733 242 SAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRL 290 (502)
Q Consensus 242 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 290 (502)
....|+|.|+++.|+++.+.|.+.++..+..+++.++.|+++||+++++
T Consensus 18 ~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~ 66 (77)
T PF12832_consen 18 CLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK 66 (77)
T ss_pred HHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence 4456899999999999999999999999999999999999999999985
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0045 Score=63.87 Aligned_cols=141 Identities=19% Similarity=0.213 Sum_probs=91.1
Q ss_pred hhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhh-hhcCCCchhHHHHHHHHHHHHHHHHHHHhhcC
Q 010733 241 GSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDIL-AQRLPDSGRVILSQISAASVIPTAAVLLLVLP 318 (502)
Q Consensus 241 ~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (502)
|+....+..|+. .+|++...+..+...+....-+..+++|+++|++ |+++ .+.... +...+....+.+...+
T Consensus 4 YGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~-----tIl~~~-ii~~lG~~llai~a~~ 77 (654)
T TIGR00926 4 YGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFK-----TILYLS-IVYVVGHALLSFGAIP 77 (654)
T ss_pred eecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHH-HHHHHHHHHHHhccCc
Confidence 455555666666 5899999888888888777788889999999974 5553 222111 1111111111111111
Q ss_pred CC--CchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCC---chhhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 319 DD--PSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERC---RTSIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 319 ~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
.. ........+.+.+.+.|.+..-+ ...+...|.+++++ +-....+.....++|+.+++++.+++.+..
T Consensus 78 ~~~~~~~~~~~l~gLaLia~G~GgiKp-~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~ 151 (654)
T TIGR00926 78 SSGHPLHDLLDLLGLALIALGTGGIKP-CVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV 151 (654)
T ss_pred ccccchHHHHHHHHHHHHHhhcccccc-CchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 11122344567777888888877 77888888886543 566788888888999999999999987664
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0038 Score=59.44 Aligned_cols=132 Identities=16% Similarity=0.072 Sum_probs=81.1
Q ss_pred HHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHH-
Q 010733 248 AMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAF- 325 (502)
Q Consensus 248 ~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 325 (502)
..+.+ -+| +...+-++..++.+..+...+.+-|+.||+|-|.. .......-++....=++...+..++..+
T Consensus 68 ~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a------~llgt~ln~iGa~Ir~iss~p~v~~~f~~ 140 (480)
T KOG2563|consen 68 NNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTA------LLLGTVLNGIGAWIRLISSLPFVPPLFRR 140 (480)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHH------HHHHHHHHHHHHHHhhhccCccccccchh
Confidence 34444 367 66667788888899999999999999999999831 1111111111111111112221223222
Q ss_pred -HHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 326 -LHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 326 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
+......+.+....+... ...-+..--+|+++|+++..+..+.+.+|.+++-.+...+..+
T Consensus 141 ~l~~~Gq~iaa~Aq~Fim~-lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 141 PLTHTGQSIAAAAQPFILG-LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred hhhHHhHHHHHHhhhHhhc-cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 333444555555544444 2234555568999999999999999899988888777766655
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0026 Score=57.12 Aligned_cols=317 Identities=12% Similarity=0.008 Sum_probs=170.5
Q ss_pred chHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhc
Q 010733 43 LGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADS 122 (502)
Q Consensus 43 ~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 122 (502)
.|.+.-+-.+...+..+.+....||+---.=+.+..++.+.+..+.++++|.++-+.+-.+..++.|.......++-+.+
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y 143 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY 143 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC
Confidence 46666666777777788888889887654445566778888999999999999998888888888887777666655543
Q ss_pred cCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccC--
Q 010733 123 TDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKID-- 200 (502)
Q Consensus 123 ~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 200 (502)
++ ...+.++.+.+.++++|..--..+.+. -..+-|...++...+.++.+...+++.++|+......-.++
T Consensus 144 -~~----~~i~~WSSGTGgAGliGa~SYa~lT~~---~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~ptl~~~~~ 215 (409)
T KOG3880|consen 144 -PS----IVIAGWSSGTGGAGLIGASSYAFLTSW---ANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYSPTLQPSTE 215 (409)
T ss_pred -CC----ceeccccCCCCcchhhhhhHHHHHhhh---cCCChhhHHHHHHHHHHHHHHHHHheeCCCccccCCCcCccce
Confidence 32 234556666666666666555555542 12677888888888877777777776665543321111000
Q ss_pred ---C-------CCCC---cchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhHHH-hHHHHHH--HhCCChh---HH
Q 010733 201 ---H-------KPRR---PFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAFA-FAAMWLE--LIGFSHK---LT 261 (502)
Q Consensus 201 ---~-------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~g~s~~---~~ 261 (502)
. .+.+ ......++.++..+. .++.++=....++.-|.+.. ..+..+- ..|++.. |.
T Consensus 216 ~~~~~~~~~~a~e~~sv~s~~~~~~e~~~~i~p-----ll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqY 290 (409)
T KOG3880|consen 216 IIPSQYLPFEAAEEKSVPSRRLGLKETLKRIKP-----LLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQY 290 (409)
T ss_pred eccCCCCcccccccccCchhhhcHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcc
Confidence 0 0000 001112222222222 22233333333333343332 2232221 2344322 33
Q ss_pred HHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcC
Q 010733 262 AFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWN 341 (502)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 341 (502)
-+....+.++..+++--. |+-+-+ .++...+.-..-++...+- ..+.. .+..+++.+.++.=|+-.|..
T Consensus 291 RwyqvlYQlGVFiSRSS~-----~~~~~p----~l~~LailQ~vNl~ff~~~-a~~~f-tpsi~ivf~lI~~EGLlGGas 359 (409)
T KOG3880|consen 291 RWYQVLYQLGVFISRSSI-----NLFTMP----YLWLLAILQFVNLLFFLLQ-AWYWF-TPSIWIVFALILFEGLLGGAS 359 (409)
T ss_pred hhhheeeeeeEEEEeccc-----eEEech----HHHHHHHHHHHHHHHHHHH-HHHHh-ccHHHHHHHHHHHHhhcCchH
Confidence 455555555544443221 111111 1122222111111111111 11111 233444445566667766666
Q ss_pred CCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHH
Q 010733 342 APATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGIL 384 (502)
Q Consensus 342 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l 384 (502)
.. ..+--+.+-.+++.|--+++.....-.+|-.++..+.=.+
T Consensus 360 YV-NTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 360 YV-NTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HH-HHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 66 4455555556778899999998887777777666655333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.29 E-value=4.3e-05 Score=76.92 Aligned_cols=131 Identities=11% Similarity=0.056 Sum_probs=2.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCC--------
Q 010733 248 AMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPD-------- 319 (502)
Q Consensus 248 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 319 (502)
+.+=++++++..+.|++.+..-++.++..++..++.+|..|.+ ++ ....+..++ ..++..+++
T Consensus 27 ttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrpr-----wi-g~g~~~~~~---g~~l~~lPhf~~~~y~~ 97 (539)
T PF03137_consen 27 TTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPR-----WI-GIGALLMGL---GSLLFALPHFLSGPYSY 97 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc-----ee-eecHHHHHH---HHHHHhccHhhcCCCcc
Confidence 3333469999999999999999999999999888887754432 11 111111111 111111110
Q ss_pred ---------------------------------------CCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCch
Q 010733 320 ---------------------------------------DPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRT 360 (502)
Q Consensus 320 ---------------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~ 360 (502)
......++++..++.|+|....++ +..+|+-|.++++..+
T Consensus 98 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t-LG~tYiDDnv~~~~sp 176 (539)
T PF03137_consen 98 EEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT-LGITYIDDNVSKKNSP 176 (539)
T ss_dssp ------------------------------------------------------SSS-----------------------
T ss_pred ccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc-ceeeeeccccccccCc
Confidence 001234556677888888888888 8999999999999999
Q ss_pred hhHhHHHhhhhhhhchhHHHHHHHHHHH
Q 010733 361 SIYALDQSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 361 ~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
...|+..+...+|-++|-.+++.+....
T Consensus 177 lYiGi~~~~~~lGPa~Gf~lg~~~L~~y 204 (539)
T PF03137_consen 177 LYIGILYAMSILGPALGFLLGSFCLRIY 204 (539)
T ss_dssp ----------------------------
T ss_pred cchhhhhHHhhccHHHHHHHHHHHHhce
Confidence 9999999988888888888888777653
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0028 Score=62.46 Aligned_cols=154 Identities=13% Similarity=0.102 Sum_probs=114.4
Q ss_pred CCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHhh
Q 010733 38 TDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFS----------STFFQVAVSRGLNGIG 107 (502)
Q Consensus 38 ~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~----------~~~~~l~~~r~l~G~~ 107 (502)
.++...|.+..+..++..++..+..+..-+..-|+++..+.++.++..+..... ++.+..+.--++..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 778888888888888999999999888888899999988888777666543211 2223334445667777
Q ss_pred hhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhcc---CCCcchhHHHHHHHHHHHHHHHHHHh
Q 010733 108 LAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSF---MGIPGWRLAFHLVGLISVIVGVLVHV 184 (502)
Q Consensus 108 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~---~~~~~w~~~f~~~~~~~~~~~~~~~~ 184 (502)
....+.....++++..|+..-|...++.....++|..++..++..+.+... .+..+-.+..++..+..++..++..+
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l 411 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL 411 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 777788888999999999999999999999999999999999999887521 11223445556666666555555556
Q ss_pred hccCCcc
Q 010733 185 YANDPRC 191 (502)
Q Consensus 185 ~~~~~~~ 191 (502)
+|++.+.
T Consensus 412 Lp~~~~~ 418 (433)
T PF03092_consen 412 LPPQKRI 418 (433)
T ss_pred cCCCchh
Confidence 7765443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.024 Score=57.09 Aligned_cols=164 Identities=15% Similarity=0.171 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhhccchhhHHH-HhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHH--HH-HHHH
Q 010733 11 VNFAAIMERADESMLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFL--WA-AATF 86 (502)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l--~~-~~~~ 86 (502)
+.+..++.++....+-.+... +..-+|.+..+.+.+.++++.|..+|+.+++++.++.-++.. .+-..+ .+ ++..
T Consensus 19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ 97 (521)
T PRK03612 19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSAL 97 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHH
Confidence 334444445544444444333 344468888889999999999999999999988744333322 111111 11 1111
Q ss_pred HHHhhhh----H-HHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHh-hccCC
Q 010733 87 LVAFSST----F-FQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAS-TSFMG 160 (502)
Q Consensus 87 ~~~~~~~----~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-~~~~~ 160 (502)
+...... + ..++..-++.|+..|+..|....+..+.. .++-++..|-......+|.++|.++.+++.- .
T Consensus 98 ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~---- 172 (521)
T PRK03612 98 ILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPR---- 172 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHh----
Confidence 1111111 1 12234455677888888888777776543 2345677899999999999999999887654 3
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q 010733 161 IPGWRLAFHLVGLISVIVGVL 181 (502)
Q Consensus 161 ~~~w~~~f~~~~~~~~~~~~~ 181 (502)
.|-....++.+.+.++++++
T Consensus 173 -lG~~~t~~~~a~l~~~~a~~ 192 (521)
T PRK03612 173 -LGLIRTAALTGSLNLLAALV 192 (521)
T ss_pred -cchHHHHHHHHHHHHHHHHH
Confidence 56554555555555554443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.037 Score=54.01 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=78.0
Q ss_pred HHHHHhhhhhhHhh---hccCchHHHHHHHHHHHHHHHHHHhh------------------hhHHHHHHHHHHHHhhhhh
Q 010733 52 IVQSFCYPLAAYLS---AHHNRAHVIALGAFLWAAATFLVAFS------------------STFFQVAVSRGLNGIGLAI 110 (502)
Q Consensus 52 l~~~~~~~~~G~l~---dr~G~r~~~~~~~~l~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~~~~ 110 (502)
++..++..+.+.+. +|+||++.+.++.++..++.++.-.. +++...++.-++.|++-+.
T Consensus 290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~ 369 (461)
T KOG3098|consen 290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDAC 369 (461)
T ss_pred HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHH
Confidence 34444445555555 56899999999998888888876553 1455677888999999999
Q ss_pred hhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHH
Q 010733 111 VIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLI 153 (502)
Q Consensus 111 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 153 (502)
.....+.++.+.. +++|..+.++.-.-..++..++-......
T Consensus 370 ~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 370 FNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999 68899999999888888887765555443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.086 Score=53.17 Aligned_cols=127 Identities=15% Similarity=0.126 Sum_probs=71.1
Q ss_pred HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHH-HHHhhcCCCCchHHHHHHHH
Q 010733 253 LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAA-VLLLVLPDDPSTAFLHGLAL 331 (502)
Q Consensus 253 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 331 (502)
-+|.+..+.+.+.+.+-.+..+|+.+++++.++..++. ......+.+...+.. +...................
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~------~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~ 117 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF------VAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLV 117 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888888888888888877654332221 111111111111111 11111111111122233445
Q ss_pred HHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 332 FIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 332 ~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
+..++..|...| ....+..+.. .+..+...|-....+.+|+.+|+.+.+++.--
T Consensus 118 ~~~~~l~G~~~P-l~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp 171 (521)
T PRK03612 118 LLIGLLIGMEIP-LLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLP 171 (521)
T ss_pred HHHHHHHHHHHH-HHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHH
Confidence 566777777776 4444443322 22356778888999999999999999887653
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.082 Score=48.37 Aligned_cols=111 Identities=8% Similarity=0.021 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAAT 85 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~ 85 (502)
+.+.++..+..+.+........+...+..++| ..++ ....+.....+++.+.+..++|-|.++.++...+...-
T Consensus 29 knv~i~s~~fl~~f~a~~gl~nlq~~vn~~lg----~~sl--~~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi 102 (390)
T KOG3097|consen 29 KNVLILSIAFLLTFTAYLGLQNLQTSVNYDLG----TVSL--GALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI 102 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcc----cchh--hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34555566555555444444443333333333 2221 12334445556666699999999999999988877643
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhcc
Q 010733 86 FLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADST 123 (502)
Q Consensus 86 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 123 (502)
. .-+=+.+..++-.-...|++.+..+..--+++++.-
T Consensus 103 A-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 103 A-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred H-hhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 2 233467888999999999999988887766666654
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.03 Score=57.44 Aligned_cols=184 Identities=8% Similarity=-0.009 Sum_probs=110.7
Q ss_pred HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHH-HHHHHHHHHHHHHHH-------HH----hhcC--
Q 010733 253 LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVI-LSQISAASVIPTAAV-------LL----LVLP-- 318 (502)
Q Consensus 253 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~----~~~~-- 318 (502)
.++++..+.|++.+.+-++..+...+..+...|..|.+....... .....++..++-... -. ...+
T Consensus 126 RF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~ 205 (735)
T KOG3626|consen 126 RFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSS 205 (735)
T ss_pred hcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCcc
Confidence 589999999999999999999888888888888766542211111 111111111110000 00 0000
Q ss_pred --------------------------CCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhh
Q 010733 319 --------------------------DDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESI 372 (502)
Q Consensus 319 --------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 372 (502)
.+...+.++.+..++.|+|....++ +..+|+-|...+++.....|+..++..+
T Consensus 206 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t-lGisYiDDnvk~~~SplYlgi~~~~~~l 284 (735)
T KOG3626|consen 206 SLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT-LGISYIDDNVKKKNSPLYLGILYSMAIL 284 (735)
T ss_pred ccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc-CCCccccccccccCCcHHHHHHHHHHHh
Confidence 0001455677788899999998888 9999999999999999999999988888
Q ss_pred hhchhHHHHHHHHHHHhcCCCCCCCCCCcchhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccc
Q 010733 373 PSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAIYAAMSIPMAICCIIYSFLYCSYPNDRGQA 447 (502)
Q Consensus 373 ~~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (502)
|=++|-.+++.+......+...+. .....+.--.+.|+..++......++..+..+..|++..+.
T Consensus 285 GPaiGfllgS~~l~lYvD~~~~~~----------~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 285 GPAIGFLLGSFCLKLYVDFGLSPI----------GITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKS 349 (735)
T ss_pred hhHHHHHHHHHHHHeeeccccCCC----------CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence 888888888877766433311111 11111222234445544444444455555555666655443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.042 Score=52.68 Aligned_cols=140 Identities=9% Similarity=0.054 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHH--HHHH---H
Q 010733 11 VNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFL--WAAA---T 85 (502)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l--~~~~---~ 85 (502)
+++.++.++.....+.+.+. ...++....++..+...+|.+|-.++.--...+ |+ |++.+.+.+- ..+. .
T Consensus 252 L~lVY~aEY~InqGv~~tl~-fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~ 326 (402)
T PF02487_consen 252 LFLVYFAEYFINQGVAPTLL-FPNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQ 326 (402)
T ss_pred HHHHHHHHHHHHhchHHHhc-CCccCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHH
Confidence 44555555544433333221 112233345577778888887766665332221 33 4443333322 2222 2
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHh
Q 010733 86 FLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAS 155 (502)
Q Consensus 86 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~ 155 (502)
...-+.++.|.+++.-+..|+..|..++-....+.+-.++++|..++|....+-++|..++.+++-++-.
T Consensus 327 s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 327 SWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2333467899999999999999999999999999999999999999999999999999999988876643
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.27 Score=48.71 Aligned_cols=125 Identities=16% Similarity=0.092 Sum_probs=73.5
Q ss_pred ChhHHHHHHHHHHHHHhhh-hhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCc-------------
Q 010733 257 SHKLTAFLMTLFVIAFCLG-GLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPS------------- 322 (502)
Q Consensus 257 s~~~~~~~~~~~~~~~~~~-~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 322 (502)
+.+...++....-+...+. .++.+++++|++|++. ......... .......+...+..+.
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~l-----f~~~~~~F~-~~f~lF~~vl~p~~~~~~p~~~~~~~~~~ 114 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEAL-----FYTVISPFL-GFFALFAFVIYPLSDLLHPTALADKLLSL 114 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHh-----HHHHHHHHH-HHHHHHHHHHhcchhhcCCcHHHHHHHhh
Confidence 3456666666665555544 7888999999999852 222222222 2222222222222111
Q ss_pred ------------hHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 323 ------------TAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 323 ------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
..|...+.....-+.......-..+.++.|.+..++..+-.++....+++|..+++.+..++.+.
T Consensus 115 ~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~ 191 (472)
T TIGR00769 115 LPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKL 191 (472)
T ss_pred cchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01112122222222222222115788999999999999999999999999999999998887754
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.087 Score=43.41 Aligned_cols=108 Identities=9% Similarity=0.044 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCC
Q 010733 263 FLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNA 342 (502)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 342 (502)
.-.++......++.++.+.+.+++|.|+ .+.++.....+...... .+.++.+...-.+.|++.+..+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~-----------sm~lg~~~y~~y~~~~~--~~~~~~l~~~s~l~G~~~a~lW 107 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKW-----------SMILGSLGYAIYIASFF--YPNSYTLYPASALLGFGAALLW 107 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHH-----------HHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhhHHhh
Confidence 3444555666777788888999999984 22222221111111111 1234556677778899999888
Q ss_pred CCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHH
Q 010733 343 PATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGIL 384 (502)
Q Consensus 343 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l 384 (502)
. ..-.++.+...++.+++-.|+...+...+..+|..+.-.+
T Consensus 108 ~-aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 108 T-AQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred H-hhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 7778888888889999999999999888877777765444
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.2 Score=48.94 Aligned_cols=146 Identities=13% Similarity=0.107 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFL 87 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~ 87 (502)
++...++..+-++....+......+...-|.++..+|..-+...+....+.....++.+|+|..|.=+++...-.+...+
T Consensus 260 vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~ 339 (432)
T PF06963_consen 260 VFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLAL 339 (432)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 34445555555555555666666666667999999999999999999999999999999999998866666543333322
Q ss_pred HH---hh---h----hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHH
Q 010733 88 VA---FS---S----TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLI 153 (502)
Q Consensus 88 ~~---~~---~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 153 (502)
+. +. + +...++.+-++.-+|.=++..+..-++.|..|+++||...|......++-.++-..++-.+
T Consensus 340 ~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 340 CVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22 22 1 3344555555555666567788889999999999999999999999998888877665543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.17 Score=46.83 Aligned_cols=131 Identities=21% Similarity=0.337 Sum_probs=83.6
Q ss_pred hHHHHHHHhCCCh--hHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCch
Q 010733 246 FAAMWLELIGFSH--KLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPST 323 (502)
Q Consensus 246 ~~~~~~~~~g~s~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (502)
..+.+..+.+.+. ...++......+...++.++.|++.||.|||+ ........ ............ . ..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-----~~~~~~~~---~~~~~~~~~~~~-~-~~ 93 (338)
T COG0477 24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRK-----VLIIGLLL---FLLGTLLLALAP-N-VG 93 (338)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchH-----HHHHHHHH---HHHHHHHHHhCc-c-ch
Confidence 4566666665555 46788888888888888899999999998773 22211111 111111111111 1 22
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcchhhhhhccCC-CCchhhHhHHHh-hhhhhhchhHHHHHHHHHH
Q 010733 324 AFLHGLALFIMGLCMSWNAPATNNPIFAEIVPE-RCRTSIYALDQS-FESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 324 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~~~~i~~~~~g~l~~~ 387 (502)
...+....+..|++.+...+ ....+..+..|+ +.++...+.... ...++..++|.+.+.+.+.
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLP-VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHH-HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444446777776666 778899999887 568888888887 5677778888777776665
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.34 Score=46.70 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=80.8
Q ss_pred HHhHHHHHH-H-hCCChhHHHHHHHHH-HHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 010733 244 FAFAAMWLE-L-IGFSHKLTAFLMTLF-VIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDD 320 (502)
Q Consensus 244 ~~~~~~~~~-~-~g~s~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (502)
..|+..|+. . .|++..+..--..+. .=..++.-+....+.|.++.|. .+ .......+..-.+++ +.
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykp-----vi--il~~~~~i~t~~lll--~~-- 91 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKP-----VI--ILQALSYIITWLLLL--FG-- 91 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhH-----HH--HHHHHHHHHHHHHHH--HH--
Confidence 346666665 3 899888765433333 3345555566778889988883 11 111111122112221 11
Q ss_pred CchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 321 PSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
.....+-+.-+..|++.+.-.. .++++-...|+++--++.+......-+|..++..++-.+...
T Consensus 92 -~sv~~mq~~q~~yg~~~a~eva--y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~ 155 (412)
T PF01770_consen 92 -TSVLAMQLMQFFYGLATAAEVA--YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF 155 (412)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHH--HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2233355667778888777554 667777778888888899999988888888888877766664
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.059 Score=38.87 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=41.5
Q ss_pred hHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhc
Q 010733 242 SAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQR 289 (502)
Q Consensus 242 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 289 (502)
.....+|...++.++|..+++++.+...++.++|.+...++.++..++
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~ 57 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR 57 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 444578888889999999999999999999999999999888875544
|
Note that many members are hypothetical proteins. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.018 Score=55.17 Aligned_cols=134 Identities=14% Similarity=0.174 Sum_probs=84.4
Q ss_pred HHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhh----hhhcCCCchhHHHHHHHHHHHHHHHHHH-----
Q 010733 243 AFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDI----LAQRLPDSGRVILSQISAASVIPTAAVL----- 313 (502)
Q Consensus 243 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 313 (502)
-..|+|.|+++.|.+....+.+....-+.+++.+++.|..+|| +||||+. +........+.+..+.
T Consensus 51 elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPf-----I~~~s~~i~~~l~Lig~aaDi 125 (498)
T KOG0637|consen 51 ELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPF-----ILAGSLLIAVSLFLIGYAADI 125 (498)
T ss_pred HhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccch-----HHHhhHHHHHHHhhhhhHhhh
Confidence 3468999999999999988888888888999999999999996 6777654 1111111111111111
Q ss_pred -HhhcCCCCchHHHHHHHHHHHHH-----hhhcCCCCcchhhhhhccCCCCchh-hHhHHHhhhhhhhchhHHHHH
Q 010733 314 -LLVLPDDPSTAFLHGLALFIMGL-----CMSWNAPATNNPIFAEIVPERCRTS-IYALDQSFESIPSSFAPAVVG 382 (502)
Q Consensus 314 -~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~~~~~~i~~~~~g 382 (502)
...........-...+.++++|+ ..-.... ..-++..|+..++.+.+ +++....+..+|+.+|-.+.+
T Consensus 126 g~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qg-p~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 126 GLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQG-PCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhh-hHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 11111111111112233444444 3334444 56788889887777766 999999888988888776655
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.47 Score=44.46 Aligned_cols=166 Identities=13% Similarity=0.029 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHhhhccCCC-ccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHH
Q 010733 7 TLVLVNFAAIMERADESMLPGVYKEVGAALHTDP-TGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAAT 85 (502)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~ 85 (502)
..+.+.+++++.....-++.........+++-+. .....-...-.....+..++.|...|+..|+|++...+.+--++.
T Consensus 28 ~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv 107 (503)
T KOG2601|consen 28 TVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSV 107 (503)
T ss_pred eeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHH
Confidence 3456788888887777777777776666665433 222323333344566778889999999999999888776544443
Q ss_pred HHHH------hhh------hHHHHHHHHHHHHhhhhhh--hhHHH--HHHhhcc----CcccchhHH---HHHHHHHhhh
Q 010733 86 FLVA------FSS------TFFQVAVSRGLNGIGLAIV--IPAIQ--SLVADST----DETNRGMAF---GWLQLTGYLG 142 (502)
Q Consensus 86 ~~~~------~~~------~~~~l~~~r~l~G~~~~~~--~~~~~--~~i~~~~----~~~~r~~~~---~~~~~~~~~G 142 (502)
..++ +.. ++..+..+-++.-...+.. ...+. .+-.||. ..+.+.... +..-..-..-
T Consensus 108 ~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~t 187 (503)
T KOG2601|consen 108 IVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQST 187 (503)
T ss_pred HHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhh
Confidence 3332 221 4444444433333222211 11111 1223332 223333333 4444455556
Q ss_pred HhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHH
Q 010733 143 SVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVI 177 (502)
Q Consensus 143 ~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~ 177 (502)
..+.|.+.|.+.+. .+-|..-.+.++-.++
T Consensus 188 n~Lapv~tg~Iitf-----vsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 188 NLLAPVITGLIITF-----VSLRASAGTFAAWALV 217 (503)
T ss_pred hchhhhhhccccee-----echhhhhhhhHHHHHH
Confidence 77888888888876 6666644444444443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.003 Score=59.27 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=3.2
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHH
Q 010733 326 LHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAV 380 (502)
Q Consensus 326 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~ 380 (502)
..++..+++|+..|.... ..+.+..+..++++|..+..+...+-.+|-.+|..+
T Consensus 250 ~~~i~~~l~g~TNGyl~t-l~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 250 WFIILMLLFGFTNGYLST-LAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -----------------H-HHH---------------------------------
T ss_pred HHHHHHHHHHHccchhhh-ceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888999998888 788888888888888777666666666665555544
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.42 Score=47.13 Aligned_cols=50 Identities=8% Similarity=-0.000 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHH
Q 010733 324 AFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPA 379 (502)
Q Consensus 324 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~ 379 (502)
....++..++.|++.+.... ....+++ .+|++ .++.......++|.++..
T Consensus 106 f~~~~~~v~~~g~~~~~~q~-s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~ 155 (437)
T TIGR00939 106 FVTTMASVVIINSGMALLQG-SLFGLAG-VFPST----YSSAVMSGQGLAGVLTSL 155 (437)
T ss_pred HHHHHHHHHHHHhhhhhhcc-cchhhcc-cCCHH----HHHHHHhcchhHHHHHHH
Confidence 34445566677888877776 5666655 45654 333334444444444433
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.52 E-value=2.4 Score=40.65 Aligned_cols=34 Identities=6% Similarity=0.072 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCch
Q 010733 325 FLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRT 360 (502)
Q Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~ 360 (502)
+...+.....+.+.+.... ..+..+++ +|++...
T Consensus 118 ~vt~~~vv~~~~a~a~~qg-s~~G~a~~-~P~~ytq 151 (406)
T KOG1479|consen 118 LVTLIIVVLLNLANAVVQG-SLYGLAGL-FPSEYTQ 151 (406)
T ss_pred HHHHHHHHHHhhhhhhhcc-chhhhhhc-CCHHHHH
Confidence 3344555666777777666 55556555 4655443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=92.11 E-value=6.7 Score=39.29 Aligned_cols=42 Identities=14% Similarity=0.019 Sum_probs=37.7
Q ss_pred cchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHH
Q 010733 345 TNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQ 386 (502)
Q Consensus 345 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~ 386 (502)
..+.++.|.+..++..+..++.....+++..+++.+...+.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999988888877
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.023 Score=49.83 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhH---------hhhccCchHH
Q 010733 11 VNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAY---------LSAHHNRAHV 73 (502)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~---------l~dr~G~r~~ 73 (502)
-.++.+++-...+++-..+-.+.++.+.++.....++-+....-++..++.|. -.||+|||+.
T Consensus 22 yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 22 YGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred echhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 34566666666666655566677788889988888888888888888888763 3578999885
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.94 E-value=5 Score=36.12 Aligned_cols=136 Identities=12% Similarity=0.059 Sum_probs=86.4
Q ss_pred cchHHHHHHHHHHHHhhhhhhHhhhccCchH--HHHHHHHHHHHHHHHHHhh----h---hHHHHHHHHHHHHhhhhhhh
Q 010733 42 GLGSLTLFRSIVQSFCYPLAAYLSAHHNRAH--VIALGAFLWAAATFLVAFS----S---TFFQVAVSRGLNGIGLAIVI 112 (502)
Q Consensus 42 ~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~--~~~~~~~l~~~~~~~~~~~----~---~~~~l~~~r~l~G~~~~~~~ 112 (502)
--|.+.+.++++..+++-+..++..|-..|- .+.+..++.++...+.... + +...=+++..+.-.+.|.++
T Consensus 283 PhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw 362 (454)
T KOG4332|consen 283 PHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW 362 (454)
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence 3589999999999999999988888755543 4555554444443333221 1 22222444555556678899
Q ss_pred hHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHh-hccCCCcchhHHHHHHHHHHHHHHHHHH
Q 010733 113 PAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAS-TSFMGIPGWRLAFHLVGLISVIVGVLVH 183 (502)
Q Consensus 113 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-~~~~~~~~w~~~f~~~~~~~~~~~~~~~ 183 (502)
|....+=+++.|+++|+..+.++..-.++=..++ +.. +...-..+-|..|-++.+...+..+...
T Consensus 363 PSimkmRsqyIPEearstimNfFRvPLnifvClv------Lynlh~~~~p~~tr~mf~icS~~~~~a~i~~~ 428 (454)
T KOG4332|consen 363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLV------LYNLHVDAFPTTTRNMFGICSAFLFVASILQR 428 (454)
T ss_pred hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhh------heecccccCccccchhhhhhHHHHHHHHHHHH
Confidence 9999999999999999988887765444322221 111 1111114567888888887776655543
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.37 E-value=15 Score=34.55 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=83.2
Q ss_pred HHHHhhhc-cCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHH----HHHHHHHHHHHHHH-Hhh----hhHHHHH
Q 010733 29 YKEVGAAL-HTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVI----ALGAFLWAAATFLV-AFS----STFFQVA 98 (502)
Q Consensus 29 ~~~i~~~~-~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~----~~~~~l~~~~~~~~-~~~----~~~~~l~ 98 (502)
+..+...+ |-+--|.+.+.+.|...+.+|+...-++.|.--.-+.+ +.|++.-.-..++. .|+ ++-+.++
T Consensus 30 l~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly 109 (508)
T COG4262 30 LGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLY 109 (508)
T ss_pred HHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHH
Confidence 33444444 55667899999999999999999988887753332222 22222111111111 233 3567888
Q ss_pred HHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHh-hccCCCcchhHHHHHHHHHHHH
Q 010733 99 VSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAS-TSFMGIPGWRLAFHLVGLISVI 177 (502)
Q Consensus 99 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-~~~~~~~~w~~~f~~~~~~~~~ 177 (502)
+.-++.|.-.|...|..+.++..-. .+-....+.....-.+|...+.++-.++.- . .|.--.-...|.+.++
T Consensus 110 ~lt~vIG~LVG~EiPL~mrml~~r~--a~~k~~~s~vl~~DYLGal~~gLl~p~lllP~-----LGl~rta~laG~~Nl~ 182 (508)
T COG4262 110 ALTAVIGVLVGAEIPLLMRMLQRRQ--AKAKDLGSRVLTLDYLGALAGGLLWPFLLLPR-----LGLVRTAALAGLCNLA 182 (508)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHH--HHHHhhhhhhhhhHhhhhhhHHHHHHHHHhhh-----hccHHHHHHHHHHHHH
Confidence 8999999999999999999887722 111112222222245555555555444332 1 3332223334455555
Q ss_pred HHHHHHh
Q 010733 178 VGVLVHV 184 (502)
Q Consensus 178 ~~~~~~~ 184 (502)
.+++..+
T Consensus 183 aAvv~~f 189 (508)
T COG4262 183 AAVVTLF 189 (508)
T ss_pred HHHHHHH
Confidence 5544433
|
|
| >PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea | Back alignment and domain information |
|---|
Probab=90.35 E-value=2.7 Score=40.92 Aligned_cols=14 Identities=7% Similarity=-0.116 Sum_probs=6.9
Q ss_pred hhhhhhhHhHhhhh
Q 010733 273 CLGGLFGGKMGDIL 286 (502)
Q Consensus 273 ~~~~~~~g~l~d~~ 286 (502)
++..+..|++..|.
T Consensus 9 i~~ii~~G~~~~~~ 22 (385)
T PF03547_consen 9 IFLIILLGYLLGRF 22 (385)
T ss_pred HHHHHHHHHHHHHh
Confidence 33344455555554
|
Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter | Back alignment and domain information |
|---|
Probab=90.12 E-value=6.7 Score=39.82 Aligned_cols=27 Identities=7% Similarity=0.284 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhhhhhHhHhhhhhhcC
Q 010733 264 LMTLFVIAFCLGGLFGGKMGDILAQRL 290 (502)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~l~d~~~~~~ 290 (502)
....+.+.+.+++..++++...++.++
T Consensus 302 ~i~~y~~~~~iaGy~S~~~yk~~~g~~ 328 (521)
T PF02990_consen 302 AIILYALTSFIAGYVSARLYKSFGGKK 328 (521)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCCc
Confidence 344455666666666666666666553
|
Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane |
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.64 E-value=2.1 Score=31.85 Aligned_cols=38 Identities=26% Similarity=0.248 Sum_probs=31.8
Q ss_pred CCCchhhHhHHHhhhhhhhchhHHHHHHHHHHHhcCCC
Q 010733 356 ERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGYKP 393 (502)
Q Consensus 356 ~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~~ 393 (502)
++.++.+.++-...-.+++++.....||+.|++.+-.+
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsP 74 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSP 74 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45677888888888899999999999999999866654
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.84 E-value=2.7 Score=38.57 Aligned_cols=140 Identities=10% Similarity=0.070 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHhhccchhhH--HHHhhhccCC-CccchHHHHHHHHHHHHhhhhhhHhhhccCc-hH-----HHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVY--KEVGAALHTD-PTGLGSLTLFRSIVQSFCYPLAAYLSAHHNR-AH-----VIALGA 78 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~s-~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~-r~-----~~~~~~ 78 (502)
++-+++.++.+++-.......+ |. .+.+..+ .+|.-|....|.+|-.+..- +-|+=+ +. ++..-.
T Consensus 253 MvPL~~VY~~EY~INQGl~ell~F~c-~~g~sls~~sqYRwyqvlYQlGVFiSRS-----S~~~~~~p~l~~LailQ~vN 326 (409)
T KOG3880|consen 253 MVPLALVYFAEYFINQGLAELLLFPC-SHGFSLSKDSQYRWYQVLYQLGVFISRS-----SINLFTMPYLWLLAILQFVN 326 (409)
T ss_pred HHHHHHHHHHHHHHhhhhHhhEEecc-ccCCccchhhcchhhheeeeeeEEEEec-----cceEEechHHHHHHHHHHHH
Confidence 3445566666655443333221 21 3344443 34678888888776443322 112111 11 122334
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHH
Q 010733 79 FLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLI 153 (502)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 153 (502)
+++.+...+..+.+++|..++.-+.-|+-.|..++-..--+.+-.++++|-.+++....+-++|..++..++-.+
T Consensus 327 l~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 327 LLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 455556666778899999999999999988888888888888888899999999999999999998888776554
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.47 E-value=5.1 Score=38.08 Aligned_cols=146 Identities=8% Similarity=-0.036 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhhhhhhhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhh-----hhhhcCCCchhHHHHH
Q 010733 226 TFQIIVAQGVFGSFSGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGD-----ILAQRLPDSGRVILSQ 300 (502)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~~~~~~~~~~~~~~~ 300 (502)
.+..++.........++...-+|.+++.-|.|-.+.+.+.....=- --.++...+.| |+||||... .-
T Consensus 32 ~illLl~LYllQGiP~GL~~~iP~lL~ak~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~GrrksWv-----vp 104 (510)
T KOG3574|consen 32 SILLLLFLYLLQGIPLGLIGAIPLLLQAKGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKSWV-----VP 104 (510)
T ss_pred hHHHHHHHHHHcCCchhHhhhhHHHhcCCCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhcccccee-----ee
Confidence 4445555556666666766788999987777766655544322211 11345556666 999997432 11
Q ss_pred HHHHHHHHHHHHHHhh---cC-C-CCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhc
Q 010733 301 ISAASVIPTAAVLLLV---LP-D-DPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSS 375 (502)
Q Consensus 301 ~~~~~~~~~~~~~~~~---~~-~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~ 375 (502)
.-..++..+..+.... .. . ..+........++.+-+..+..-. .....+..+..+++.|-+..........|.+
T Consensus 105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDI-AVDgwALtmLs~e~lgyaST~q~Vg~~~Gyf 183 (510)
T KOG3574|consen 105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDI-AVDGWALTMLSRENLGYASTCQSVGQTAGYF 183 (510)
T ss_pred hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhh-hhhHHHHHhcCHhhcCchhHHHHHHHhhhHH
Confidence 1111111111111110 00 0 111222222233444444444433 4456666666666666655444444444444
Q ss_pred hhHH
Q 010733 376 FAPA 379 (502)
Q Consensus 376 i~~~ 379 (502)
++..
T Consensus 184 L~~~ 187 (510)
T KOG3574|consen 184 LGNV 187 (510)
T ss_pred hhcc
Confidence 4443
|
|
| >PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length | Back alignment and domain information |
|---|
Probab=85.07 E-value=25 Score=30.65 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=21.2
Q ss_pred hccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 121 DSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 121 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
++...+++.+.-.......-++..+|..+++.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~ 188 (209)
T PF06912_consen 153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRR 188 (209)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334333344555666666777777777777776
|
The function of this family is unknown although a few members are thought to be membrane proteins. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=84.38 E-value=5 Score=39.64 Aligned_cols=57 Identities=9% Similarity=0.048 Sum_probs=31.5
Q ss_pred HhhhhhhhHH-HhHHHHHHH--hCCChhHHHHHHH---HHHHHHhhhhhhhHhHhhhhhhcCC
Q 010733 235 VFGSFSGSAF-AFAAMWLEL--IGFSHKLTAFLMT---LFVIAFCLGGLFGGKMGDILAQRLP 291 (502)
Q Consensus 235 ~~~~~~~~~~-~~~~~~~~~--~g~s~~~~~~~~~---~~~~~~~~~~~~~g~l~d~~~~~~~ 291 (502)
+......+.. .-.|..+++ .+.|-.+.+.+.. ++++=-+=+.++=....+|+||||.
T Consensus 10 ~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKS 72 (544)
T PF13000_consen 10 FLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKS 72 (544)
T ss_pred HHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcch
Confidence 3333333443 357888886 6777776655433 3333333333444555668899863
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=82.54 E-value=4.9 Score=38.85 Aligned_cols=62 Identities=23% Similarity=0.178 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCC---chhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 325 FLHGLALFIMGLCMSWNAPATNNPIFAEIVPERC---RTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
..+.+.++++++|.|..-+ ...++..|.++++. +.+....+....++|+.++..+.+++.++
T Consensus 34 ~~~~~gL~lia~G~G~~K~-ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~ 98 (372)
T PF00854_consen 34 GLFYIGLALIAVGTGGIKP-NISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQN 98 (372)
T ss_dssp CHHHHHHHHHHHHHHCCHH-HHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC
T ss_pred HHHHHHHHHHHhccccccc-cHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccc
Confidence 3456777788999999988 88889999987653 45567778888899999999998888866
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.84 E-value=48 Score=32.92 Aligned_cols=43 Identities=19% Similarity=0.075 Sum_probs=36.7
Q ss_pred cchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 345 TNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 345 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
..+..+.|....++..+-.++.+...+++..++..+..++.++
T Consensus 168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4577888888888889999999999999998888888887764
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.84 E-value=65 Score=33.21 Aligned_cols=144 Identities=18% Similarity=0.070 Sum_probs=80.3
Q ss_pred hHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHH-----HHHHHh
Q 010733 242 SAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPT-----AAVLLL 315 (502)
Q Consensus 242 ~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 315 (502)
+...-+-.|+. .++.+...+.-....+........+++++++|-+--|. +.+.+ ...+..+.+ ......
T Consensus 55 g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry----~tI~~-~s~i~~~G~~~lt~~a~~~~ 129 (571)
T KOG1237|consen 55 GLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRY----FTINI-GSLISLLGLFGLTLSAMIPA 129 (571)
T ss_pred cchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH----HHHHH-HHHHHHHHHHHHHHHHHhhh
Confidence 33344445554 67777776666666777777777889999999765443 11111 111111111 111111
Q ss_pred hcCC------C----C----chHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCC----c--hhhHhHHHhhhhhhhc
Q 010733 316 VLPD------D----P----STAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERC----R--TSIYALDQSFESIPSS 375 (502)
Q Consensus 316 ~~~~------~----~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~----~--~~~~g~~~~~~~~~~~ 375 (502)
..+. . . .....+...+....+|.+..-+ ...+.-.|-++... + ..-+.......++|..
T Consensus 130 l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~-~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l 208 (571)
T KOG1237|consen 130 LLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRP-CLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGAL 208 (571)
T ss_pred cCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCC-cchhhcccccCccCcchhhCcccchhHHHHHHHHHHH
Confidence 1110 0 0 1123445566667778888777 77778888777221 2 2456666677777777
Q ss_pred hhHHHHHHHHHHHhcCC
Q 010733 376 FAPAVVGILAQHVYGYK 392 (502)
Q Consensus 376 i~~~~~g~l~~~~~~~~ 392 (502)
++..+.-++.+. .++.
T Consensus 209 ~a~t~~vyiq~~-~~w~ 224 (571)
T KOG1237|consen 209 LAQTVLVYIQDN-VGWK 224 (571)
T ss_pred HHHHHHHhhhhc-ccce
Confidence 777777776665 3554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-18
Identities = 56/381 (14%), Positives = 103/381 (27%), Gaps = 50/381 (13%)
Query: 36 LHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAF----S 91
LG SI F + +S N + G L AA + F +
Sbjct: 57 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 116
Query: 92 STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSV 151
S+ + V L G + P + + RG +G + +
Sbjct: 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176
Query: 152 LIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPR-------------CLAKDGTK 198
L + W A ++ +++V + D D +
Sbjct: 177 LGMAWFN----DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNE 232
Query: 199 IDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAFAFAAMWL-----EL 253
+ ++ V+ +A F W E+
Sbjct: 233 KAEQELTAKQIFMQY-------VLPNKLL-WYIAIANV--FVYLLRYGILDWSPTYLKEV 282
Query: 254 IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVL 313
F+ +++ L+ A G L G M D ++ R V V
Sbjct: 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSD----KVFRGNRGATGVFFMTLVTIATIVY 338
Query: 314 LLVLPDDPSTA--FLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFES 371
+ +P+ + + I G M A E+ P++ + F
Sbjct: 339 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHA------LELAPKKAAGTAAGFTGLFGY 392
Query: 372 IP-SSFAPAVVGILAQHVYGY 391
+ S A A+VG +G+
Sbjct: 393 LGGSVAASAIVGYTVDF-FGW 412
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 50/355 (14%), Positives = 105/355 (29%), Gaps = 34/355 (9%)
Query: 43 LGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRG 102
+++LF + Q L+ L +I ++A + + + V
Sbjct: 49 FAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSI 108
Query: 103 LNGIGLAIVIPAIQSLVADSTDETNRG--MAFGWLQLTGYLGSVLGGFCSVLIASTSFMG 160
+ GI L A V ++ +R FG ++ G +G LG M
Sbjct: 109 VGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASI------VGIMF 162
Query: 161 IPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKM 220
+ F L ++I+ VL+ D A + +L K+
Sbjct: 163 TINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKL 222
Query: 221 VIKIPTFQIIVAQGVFGSFSGSAFAFAAMWLELIGFSHKLTAFLMTLFVIA----FCLGG 276
+I + F F + ++ ++ T+ +
Sbjct: 223 WFLS--LYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAP 280
Query: 277 LFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGL 336
L ++G L +G ++ +I +S +A ++++ LH +
Sbjct: 281 LIINRIG--GKNALLLAGTIMSVRIIGSSFATSALEVVIL-------KTLHMFE---VPF 328
Query: 337 CMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQHVYGY 391
+ R +IY + A + +LA ++Y
Sbjct: 329 LL-----VGCFKYITSQFEVRFSATIYLV---CFCFFKQLAMIFMSVLAGNMYES 375
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 44/274 (16%), Positives = 84/274 (30%), Gaps = 41/274 (14%)
Query: 73 VIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAF 132
VI +G ++ AT + +S+ + + + G+G + ++L D + T A
Sbjct: 67 VILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHAN 126
Query: 133 GWLQLTG----YLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYAND 188
L + L ++GG + WR + + ++ V + + +
Sbjct: 127 SLLNMGILVSPLLAPLIGGL---------LDTMWNWRACYLFLLVLCAGVTFSMARWMPE 177
Query: 189 PRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSGSAFAFAA 248
T+ PR K L + F + + G AF A
Sbjct: 178 --------TRPVDAPRTRLLTSYKTLFGN-------SGFNCYLLMLIGG--LAGIAAFEA 220
Query: 249 M----WLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAA 304
++G S + L L + A G F G+ +R ++ +
Sbjct: 221 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGR----PNKRF---STLMWQSVICC 273
Query: 305 SVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCM 338
+ + L ALF G M
Sbjct: 274 LLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGM 307
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 36/215 (16%), Positives = 65/215 (30%), Gaps = 23/215 (10%)
Query: 74 IALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVAD--STDETNRGMA 131
+ G L ++A + S L IG + P + +LV + R
Sbjct: 88 VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG 147
Query: 132 FGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRC 191
F G LG F + LI G+ +AF L I + +G+LV+ + +
Sbjct: 148 FSIF----VFGINLGAFIAPLIVGA-AQEAAGYHVAFSLAA-IGMFIGLLVYYFGG-KKT 200
Query: 192 LAKDGTKIDHKPRRPFWAD-IKDLITDAKMVIKIPTFQIIVAQGVFGSFSGS----AFAF 246
L + + + I I +V ++ A A
Sbjct: 201 LDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAI 260
Query: 247 AAMWLELIGFSHKLT---------AFLMTLFVIAF 272
+ + S K+T + + + F
Sbjct: 261 PVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLF 295
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 5e-04
Identities = 42/372 (11%), Positives = 99/372 (26%), Gaps = 119/372 (31%)
Query: 179 GVLVH--------VYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQII 230
VL+ A D + + FW ++K+ + ++ +
Sbjct: 152 NVLIDGVLGSGKTWVALD---VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 231 VAQGVFGSFSGSAFAFAAMWLELIGFSHKLTAFLMT------LFVI----------AFCL 274
+ +++ + + + L + +L L + L V+ AF
Sbjct: 209 IDP----NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-- 262
Query: 275 GGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIM 334
++ + L + + A + L D S
Sbjct: 263 ---------NLSCKIL-----LTTRFKQVTDFLSAATTTHISL-DHHSMTLTPDEVK--- 304
Query: 335 GLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPS---SFAPAVVGILA------ 385
L + + LD + +P + P + I+A
Sbjct: 305 SLLLKY------------------------LDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 386 -------QHVYGYKPIPQDASNSVEIETDRENAASLAKAIYAAMS-------IPMAICCI 431
+H + +S+ + E + ++ +S IP + +
Sbjct: 341 LATWDNWKH-VNCDKLTTIIESSLNVLEPAEY-----RKMFDRLSVFPPSAHIPTILLSL 394
Query: 432 IYSFLYCSYPNDRGQATTDALRESEMQKLVA-DSIEKCCHVHVLEVEMNAKEEKGDTIDR 490
I+ + + + LV E + + +E+ K E +
Sbjct: 395 IWF-------DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-- 445
Query: 491 EHEGEQKSLLSH 502
H +S++ H
Sbjct: 446 -H----RSIVDH 452
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 502 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.57 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.46 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.42 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.37 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.29 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.18 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.09 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=321.87 Aligned_cols=371 Identities=14% Similarity=0.100 Sum_probs=289.0
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
+|+.+..++++.+...++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++.++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 456778888889999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccC
Q 010733 84 ATFLVAF----SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFM 159 (502)
Q Consensus 84 ~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 159 (502)
+.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--- 181 (451)
T 1pw4_A 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW--- 181 (451)
T ss_dssp HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCcc-hhHHHHHHHHHHHHHHHHHHh-hccCCcccccCCCccCCCCCCcc---hhhhHHHHH--HhhhhhhhhHHHHHHH
Q 010733 160 GIPG-WRLAFHLVGLISVIVGVLVHV-YANDPRCLAKDGTKIDHKPRRPF---WADIKDLIT--DAKMVIKIPTFQIIVA 232 (502)
Q Consensus 160 ~~~~-w~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~ 232 (502)
.+ ||+.|++.+++.++..++.++ .+|+|+....+++++.++..+.. .++.+...+ ..+..++++.++...+
T Consensus 182 --~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (451)
T 1pw4_A 182 --FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAI 259 (451)
T ss_dssp --TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHH
T ss_pred --hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHH
Confidence 78 999999999988877766655 45444432221111111000000 000000001 1356677788777666
Q ss_pred HHHhhhh-hhhHHHhHHHHHHH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhh--hhcCCCchhHHHHHHHHHHHHH
Q 010733 233 QGVFGSF-SGSAFAFAAMWLEL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDIL--AQRLPDSGRVILSQISAASVIP 308 (502)
Q Consensus 233 ~~~~~~~-~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~~~~ 308 (502)
..++... .+....+.|.|+++ +|+++.+++++.+...++.+++.++.+++.||+ ++|+ .... ...+...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-----~~~~--~~~~~~~ 332 (451)
T 1pw4_A 260 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-----ATGV--FFMTLVT 332 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-----HHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----hHHH--HHHHHHH
Confidence 5555554 44666789999986 899999999999999999999999999999998 7773 1111 1111111
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhh-hhchhHHHHHHHHHH
Q 010733 309 TAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESI-PSSFAPAVVGILAQH 387 (502)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~i~~~~~g~l~~~ 387 (502)
........... ...+......++.|++.+...+ ....+..|..|++.|++++|+.+.+.++ ++.++|.+.|.+.+.
T Consensus 333 -~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 409 (451)
T 1pw4_A 333 -IATIVYWMNPA-GNPTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 409 (451)
T ss_dssp -HHHHHTTSCCT-TCHHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHhcc-cCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11222222221 2333445566677777776666 5678999999999999999999999999 999999999999987
Q ss_pred HhcC
Q 010733 388 VYGY 391 (502)
Q Consensus 388 ~~~~ 391 (502)
. ++
T Consensus 410 ~-g~ 412 (451)
T 1pw4_A 410 F-GW 412 (451)
T ss_dssp S-CS
T ss_pred c-Cc
Confidence 3 44
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=315.84 Aligned_cols=411 Identities=13% Similarity=0.148 Sum_probs=288.6
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHhhhccCC--------CccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEVGAALHTD--------PTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAF 79 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~ 79 (502)
..+.+++.++.++|..+++..+|.+.++++.+ .++.|++.+++.+|..++++++|+++||+|||++++++.+
T Consensus 14 ~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~ 93 (491)
T 4gc0_A 14 TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34456777889999999999999999888532 3457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH------------------hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhh
Q 010733 80 LWAAATFLVA------------------FSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYL 141 (502)
Q Consensus 80 l~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 141 (502)
++.+++++++ +++|+++++++|+++|++.|+..+....+++|+.|+++|++..++.+.+..+
T Consensus 94 l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~ 173 (491)
T 4gc0_A 94 LFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIF 173 (491)
T ss_dssp HHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhh
Confidence 9999999999 4789999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhcc---CCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcc----------h
Q 010733 142 GSVLGGFCSVLIASTSF---MGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPF----------W 208 (502)
Q Consensus 142 G~~~g~~l~~~l~~~~~---~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 208 (502)
|.++++.++..+..... .....||+.+.+..+..++..+..++.||+|++...+++.++..+...+ .
T Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~ 253 (491)
T 4gc0_A 174 GQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV 253 (491)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH
Confidence 99999999887765321 1235799999998888888888888899999887665544332110000 0
Q ss_pred hhhHHHHH------HhhhhhhhhHHHHHHH-HHHhhhh-hhhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhH
Q 010733 209 ADIKDLIT------DAKMVIKIPTFQIIVA-QGVFGSF-SGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGG 280 (502)
Q Consensus 209 ~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g 280 (502)
.+.++... .....++.+....... ..+.... .+....|.|.+.+..+.+...........++..+++.++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (491)
T 4gc0_A 254 QEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAI 333 (491)
T ss_dssp HHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 00000000 0111222223332222 2222222 23445577777788888888888888888999999999999
Q ss_pred hHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCch
Q 010733 281 KMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRT 360 (502)
Q Consensus 281 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~ 360 (502)
++.||+|||+ .... ......+.+..+..................++..+++. ...+..+.+.+|.+|++.|+
T Consensus 334 ~l~dr~Grr~-----~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~E~fPt~~R~ 405 (491)
T 4gc0_A 334 MTVDKFGRKP-----LQII-GALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAM--SWGPVCWVLLSEIFPNAIRG 405 (491)
T ss_dssp HHHHHHCSHH-----HHHH-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHSSCTTTHH
T ss_pred HHHHhhcCcc-----hhcc-chHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh--HHHHHHHHHHHHhCCHhHHH
Confidence 9999999995 2222 11122222222222222222222222222222333333 33335788999999999999
Q ss_pred hhHhHHHhhhhhhhchhHHHHHHHHHHHhcCCCCCCCCCCcchhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010733 361 SIYALDQSFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAIYAAMSIPMAICCIIYSFLYCSY 440 (502)
Q Consensus 361 ~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (502)
+++|+.++++++++++++.+.+.+.+...... .......+.++++++.+..++.++..
T Consensus 406 ~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~----------------------~~~~~~~~~i~~~~~~~~~i~~~~~~ 463 (491)
T 4gc0_A 406 KALAIAVAAQWLANYFVSWTFPMMDKNSWLVA----------------------HFHNGFSYWIYGCMGVLAALFMWKFV 463 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH----------------------HHTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------hhhhhHHHHHHHHHHHHHHHHHHhee
Confidence 99999999999999999998887765421100 00001233445556666677777889
Q ss_pred cCcccccc
Q 010733 441 PNDRGQAT 448 (502)
Q Consensus 441 ~~~~~~~~ 448 (502)
||+|+++-
T Consensus 464 PETkg~tL 471 (491)
T 4gc0_A 464 PETKGKTL 471 (491)
T ss_dssp CCCTTCCH
T ss_pred cCCCCCCH
Confidence 99988763
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=305.36 Aligned_cols=358 Identities=13% Similarity=0.091 Sum_probs=280.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHH
Q 010733 3 SETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWA 82 (502)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~ 82 (502)
+++..+..+++..+..+++....++.+|.+.+++|.+..+.|++.+.+.+++.++.+++|+++||+|||++++++.++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 34667778888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH---HhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHH-hhcc
Q 010733 83 AATFLV---AFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIA-STSF 158 (502)
Q Consensus 83 ~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-~~~~ 158 (502)
++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+. +.
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-- 180 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN-- 180 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS--
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 999999 889999999999999999999999999999999999999999999999999999999999999998 44
Q ss_pred CCCcc-------------------------hhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHH
Q 010733 159 MGIPG-------------------------WRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKD 213 (502)
Q Consensus 159 ~~~~~-------------------------w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (502)
.+ ||+.|++.+++.++..++.++.. .|+..++++++ + ++ ++
T Consensus 181 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-~--~~-------~~ 246 (438)
T 3o7q_A 181 ---VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK-FPALQSDNHSD-A--KQ-------GS 246 (438)
T ss_dssp ---SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCTTTCCCC-S--ST-------TS
T ss_pred ---cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc-CCccccccccc-c--cc-------cc
Confidence 33 99999988887776666554432 12111111010 0 01 11
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHHhHHHH-HHH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcC
Q 010733 214 LITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFAFAAMW-LEL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRL 290 (502)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 290 (502)
.....++++++|.++...+..++... ......+.|.| +++ +|+++.+++...+...++.++++++.+++.||+++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 326 (438)
T 3o7q_A 247 FSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK 326 (438)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 22345667788888877666655555 34556789999 886 5999999999999999999999999999999999984
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhh
Q 010733 291 PDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFE 370 (502)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 370 (502)
...... .+... ..+ .... .+..+. ...+++.|++.+...+ ...++..|.+|++ ++++.++.. .+
T Consensus 327 -----~~~~~~--~~~~~-~~~-~~~~--~~~~~~--~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~-~~ 390 (438)
T 3o7q_A 327 -----VLAAYA--LIAMA-LCL-ISAF--AGGHVG--LIALTLCSAFMSIQYP-TIFSLGIKNLGQD-TKYGSSFIV-MT 390 (438)
T ss_dssp -----HHHHHH--HHHHH-HHH-HHHH--CCHHHH--HHHHHHHHHHHTTHHH-HHHHHHHSSCGGG-HHHHHHHHH-HT
T ss_pred -----HHHHHH--HHHHH-HHH-HHHH--cCCcHH--HHHHHHHHHHHHHHHH-HHHHHHHhhcccc-ccchhhHHH-HH
Confidence 222111 11111 111 1111 122222 2344667777777776 7788888999866 888888877 67
Q ss_pred hhhhchhHHHHHHHHHHHhcCC
Q 010733 371 SIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 371 ~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
.+++.++|.+.|.+.|..+++.
T Consensus 391 ~~g~~~~~~~~g~l~~~~g~~~ 412 (438)
T 3o7q_A 391 IIGGGIVTPVMGFVSDAAGNIP 412 (438)
T ss_dssp THHHHHHHHHHHHHHHHHTSSG
T ss_pred HHHHHHHHHHHHHHHHHhcchH
Confidence 8999999999999999964354
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=286.46 Aligned_cols=346 Identities=14% Similarity=0.133 Sum_probs=275.0
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFL 87 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~ 87 (502)
+..+++..++..++.....+.+|.+.+++|.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 35567778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHH
Q 010733 88 VAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLA 167 (502)
Q Consensus 88 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~ 167 (502)
.+++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++++.+. .+||+.
T Consensus 82 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~ 156 (375)
T 2gfp_A 82 AVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-----WNWRAC 156 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-----HHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----ccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999887 799999
Q ss_pred HHHHHHHHHHHHHHHHh-hccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHH
Q 010733 168 FHLVGLISVIVGVLVHV-YANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFA 245 (502)
Q Consensus 168 f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 245 (502)
|++.+++.++..+..++ .||+++.++++ ++.+ ++.++.+++|.++...+..+.... ......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (375)
T 2gfp_A 157 YLFLLVLCAGVTFSMARWMPETRPVDAPR---------TRLL-------TSYKTLFGNSGFNCYLLMLIGGLAGIAAFEA 220 (375)
T ss_dssp HHHHHHHHHHHHCCCCCSSCCCSTTTCCC---------CCTT-------TCSTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCcccCCCCccc---------ccHH-------HHHHHHhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 99998888777764444 44433321111 0011 112344556666665555444444 345556
Q ss_pred hHHHHHHH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHH-HHHHHHHhhcCC-CCc
Q 010733 246 FAAMWLEL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVI-PTAAVLLLVLPD-DPS 322 (502)
Q Consensus 246 ~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~ 322 (502)
+.|.++++ +|.++.+++.+.....++.+++.++.+++.||.+++. ...... ............ ...
T Consensus 221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 289 (375)
T 2gfp_A 221 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM-----------WQSVICCLLAGLLMWIPDWFGVM 289 (375)
T ss_dssp HCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH-----------HHHHHHHHHTSSSSSHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhccc
Confidence 78888875 8999999999999999999999999999999988741 111111 111111000000 012
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 323 TAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
+.+......++.|++.+...+ ...++..|..| ++|+++.|+.+...+++..++|.+.|.+.+.
T Consensus 290 ~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 290 NVWTLLVPAALFFFGAGMLFP-LATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSS-TTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhH-HHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333344566677888888777 78899999998 8899999999999999999999999999876
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=283.09 Aligned_cols=371 Identities=12% Similarity=0.059 Sum_probs=258.6
Q ss_pred hHHHHHHHHHHHHHHHhhccch-hhHHHHhhh-----ccCCCccchHHHHHHHHHHHHhhhhhhHhhhc-cCchHHHHHH
Q 010733 5 TLTLVLVNFAAIMERADESMLP-GVYKEVGAA-----LHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAH-HNRAHVIALG 77 (502)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~-----~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~G~r~~~~~~ 77 (502)
++.++.+++..+...+...... ...+++.++ +|.+..+.|++.+.+.++..++++++|+++|| +|||+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~ 91 (491)
T 4aps_A 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWG 91 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 4456666666666666655544 344455555 99999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCccc--chhHHHHHHHHHhhhHhHHHHHHHHHHh
Q 010733 78 AFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETN--RGMAFGWLQLTGYLGSVLGGFCSVLIAS 155 (502)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~l~~ 155 (502)
.++.+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++ |++++++.+.+.++|..++|.+++.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 171 (491)
T 4aps_A 92 GVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE 171 (491)
T ss_dssp HHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988 7778888999999999999999999999
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHH------------------
Q 010733 156 TSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITD------------------ 217 (502)
Q Consensus 156 ~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 217 (502)
. .+||+.|++.++..++..++.++..++...+..+.+ +++ ...++.++..+.
T Consensus 172 ~-----~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 241 (491)
T 4aps_A 172 A-----AGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRP--TDP---LAPEEVKPLLVKVSLAVAGFIAIIVVMNLV 241 (491)
T ss_dssp H-----SCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCC--SCC---CSHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_pred h-----hhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCC--CCc---cccchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8 899999999888777666655543322111110000 000 001010110000
Q ss_pred ---------------------------h-------hhhhhhhHHHHHHHHHHhhhh-hhhHHHhHHHHHHH-hCCChhHH
Q 010733 218 ---------------------------A-------KMVIKIPTFQIIVAQGVFGSF-SGSAFAFAAMWLEL-IGFSHKLT 261 (502)
Q Consensus 218 ---------------------------~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~g~s~~~~ 261 (502)
+ ....+....+......+.... ......++|.+.++ .+.+..+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (491)
T 4aps_A 242 GWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPV 321 (491)
T ss_dssp SSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCS
T ss_pred cCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCH
Confidence 0 001111112222222222222 23444578888875 67776677
Q ss_pred HHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhh--cC-CCCchHHHHHHHHHHHHHhh
Q 010733 262 AFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLV--LP-DDPSTAFLHGLALFIMGLCM 338 (502)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~g~~~ 338 (502)
+.......++.+++.++.+++.||++||+....+.... ......+......... .. ..+...+......++.|++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 400 (491)
T 4aps_A 322 SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV-GLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGE 400 (491)
T ss_dssp GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH-HHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHH
Confidence 78888888999999999999999999986432111111 1111111111111100 00 11123344556677788888
Q ss_pred hcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 339 SWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
+...+ ....++.|..|++.|++++|+.+....+|+.++|.+.+.+.+.
T Consensus 401 ~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 401 MLISP-VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp HTTTT-HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HHHhH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88777 7889999999999999999999999999999999998877543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=250.69 Aligned_cols=356 Identities=12% Similarity=0.053 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHH-HhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHH
Q 010733 7 TLVLVNFAAIMERADESMLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAAT 85 (502)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~ 85 (502)
.+..+....++.........+.+|. +++++|.++.+.|++.+.+.+++.++++++|+++||+|||++++++..+++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~ 87 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMF 87 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3445555555555555555566665 566799999999999999999999999999999999999999999888776532
Q ss_pred H---HHHhhhhHH-HHHHHHHHHHhhhhhhhhHHHHHHhhccCc--ccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccC
Q 010733 86 F---LVAFSSTFF-QVAVSRGLNGIGLAIVIPAIQSLVADSTDE--TNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFM 159 (502)
Q Consensus 86 ~---~~~~~~~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 159 (502)
. .+.+++... .++..+++.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.+++++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~---- 163 (417)
T 2cfq_A 88 APFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT---- 163 (417)
T ss_dssp HHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 2 223333221 234566666666655555444555555433 456777888888899999999999999886
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh
Q 010733 160 GIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF 239 (502)
Q Consensus 160 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (502)
.+||+.|++.++..++..+..+..+|++++..+++++++++.++.. .++.+++++++.++......+....
T Consensus 164 --~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (417)
T 2cfq_A 164 --INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFS-------LKLALELFRQPKLWFLSLYVIGVSC 234 (417)
T ss_dssp --HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCC-------HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --hchhHHHHHHHHHHHHHHHHHHHcCccccccccccccccccccccc-------HHHHHHHhcCCchhhHHHHHHHHHH
Confidence 5899999988777555554444455444221111111011111111 1233456677777655544333333
Q ss_pred hh-hHHHhHHHHHHH-hC---CChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 010733 240 SG-SAFAFAAMWLEL-IG---FSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLL 314 (502)
Q Consensus 240 ~~-~~~~~~~~~~~~-~g---~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (502)
.+ ....+.|.|+++ ++ .+....++..+...++.+++.++.+++.||++||+ .... ..... . .....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~l~~-~~~~~--~-~~~~~ 305 (417)
T 2cfq_A 235 TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-----ALLL-AGTIM--S-VRIIG 305 (417)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----HHHH-HHHHH--H-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-----HHHH-HHHHH--H-HHHHH
Confidence 22 333567888764 33 22445577777888888999999999999999984 2211 11111 1 11111
Q ss_pred hhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHH-HhhhhhhhchhHHHHHHHHHHH
Q 010733 315 LVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALD-QSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
. ...++.+ .+.+..++.+++.+...+ ....+..|.+|++.|+++.++. +..+.+|+.++|.+.|.+.+..
T Consensus 306 ~--~~~~~~~-~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~ 376 (417)
T 2cfq_A 306 S--SFATSAL-EVVILKTLHMFEVPFLLV-GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376 (417)
T ss_dssp H--TTCCSHH-HHHHHTTHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS
T ss_pred H--HHhccHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc
Confidence 1 1122222 233333444554444333 4578999999999999999994 8888999999999999998863
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=248.33 Aligned_cols=368 Identities=11% Similarity=0.032 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHHHhhccchhhH-HHHhhhcc------CCCccchHHHHHHHHHHHHhhhhhhHhhhcc-CchHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVY-KEVGAALH------TDPTGLGSLTLFRSIVQSFCYPLAAYLSAHH-NRAHVIALGAF 79 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~------~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-G~r~~~~~~~~ 79 (502)
++.+.+..++..+..+...+.+ +++.+++| .+..+.|++.+++.++..++.+++|+++||+ |||+++.++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~ 93 (524)
T 2xut_A 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSL 93 (524)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3445555666555555444444 45778899 9999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHhhh-hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHH---HHHHHhhhHhHHHHHHHHHHh
Q 010733 80 LWAAATFLVAFSS-TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGW---LQLTGYLGSVLGGFCSVLIAS 155 (502)
Q Consensus 80 l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~l~~~l~~ 155 (502)
+.+++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 173 (524)
T 2xut_A 94 IYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK 173 (524)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999 999999999999999999999999999999999999877666 999999999999999999988
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCc-cCC-C------CCCcchhhhHHHH------------
Q 010733 156 TSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTK-IDH-K------PRRPFWADIKDLI------------ 215 (502)
Q Consensus 156 ~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~------~~~~~~~~~~~~~------------ 215 (502)
. .+||+.|++.+++.++..++.+...++.+..+.+++. .+. + +.+....+.....
T Consensus 174 ~-----~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (524)
T 2xut_A 174 N-----FGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYA 248 (524)
T ss_dssp T-----SCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHT
T ss_pred c-----ccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhh
Confidence 7 8999999998888776665554432221111110000 000 0 0000000000000
Q ss_pred --------------------------HHh---h---------hhhhhhHHHHHHHHHHhhhhhhhH----HHhHHHHHHH
Q 010733 216 --------------------------TDA---K---------MVIKIPTFQIIVAQGVFGSFSGSA----FAFAAMWLEL 253 (502)
Q Consensus 216 --------------------------~~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 253 (502)
..+ . .....+...............+.. ....+.+..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (524)
T 2xut_A 249 LVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND 328 (524)
T ss_dssp GGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh
Confidence 000 0 001111221111111111111111 1223333333
Q ss_pred hCCCh-hHHHHHHHHHHHHHhhhhhhhHhHh----hhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCC------CCc
Q 010733 254 IGFSH-KLTAFLMTLFVIAFCLGGLFGGKMG----DILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPD------DPS 322 (502)
Q Consensus 254 ~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 322 (502)
.+.+. ...+.+.....++.+++..+.+++. +|.++|... ....... ..+............ ...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~ 403 (524)
T 2xut_A 329 MVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTA---LRKMGAG--IAITGLSWIVVGTIQLMMDGGSAL 403 (524)
T ss_dssp SCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CC---HHHHHTH--HHHHHHHHHTTTTTTTTTTTTCCC
T ss_pred cCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCCh---HHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCc
Confidence 33322 1345555555555556666666553 343332111 1111111 111111111111111 112
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHH
Q 010733 323 TAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQ 386 (502)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~ 386 (502)
..+.+....++.|++.+...+ ...++..|..|++.||+++|+.++..++|+.++|.+.|.+.+
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSA-TGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH-HHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 233344566777888777776 778899999999999999999999999999999999998765
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-14 Score=140.44 Aligned_cols=176 Identities=14% Similarity=0.026 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhh-ccCCCccchHHHHHHHHHHHHhhhhhhHhhhcc--CchHHHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKEVGAA-LHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHH--NRAHVIALGAFLWA 82 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~--G~r~~~~~~~~l~~ 82 (502)
+.++...+..++............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 345556666666666666666777777666 899999999999999999999999999999999 99999888887776
Q ss_pred -HHHHHHHhh--hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhh-hHhHHHHHHHHHHhhcc
Q 010733 83 -AATFLVAFS--STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYL-GSVLGGFCSVLIASTSF 158 (502)
Q Consensus 83 -~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~~~~ 158 (502)
++.++..+. .+.+.+.+..++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~-- 409 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-- 409 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 666666666 37888888889999999999999999999999999999999999999999 999999999999997
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhc
Q 010733 159 MGIPGWRLAFHLVGLISVIVGVLVHVYA 186 (502)
Q Consensus 159 ~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 186 (502)
.+|+..|++.+++.++..++.+...
T Consensus 410 ---~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 410 ---FGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp ---SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999888888777766654
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-13 Score=131.45 Aligned_cols=143 Identities=8% Similarity=0.128 Sum_probs=124.2
Q ss_pred CccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 010733 40 PTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLV 119 (502)
Q Consensus 40 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 119 (502)
..+.+++.++..++..++.++.|++.||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888899999999999999999999999999888888888888888888888888888777778888999
Q ss_pred hhccCcccchhHHHH-HHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhhcc
Q 010733 120 ADSTDETNRGMAFGW-LQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYAN 187 (502)
Q Consensus 120 ~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 187 (502)
.|.+|++.|+++.++ .+....+|..++|.+++.+.+. .+++..|.+.+++.++..++.+...+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-----~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-----IGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-----SHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-----cCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999998 4788889999999999999887 78999999988888877776655444
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-12 Score=125.59 Aligned_cols=165 Identities=11% Similarity=0.008 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHH-hhh-ccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEV-GAA-LHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAAT 85 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i-~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~ 85 (502)
+....+..++............|.+ .++ +|.+..+.+++.+.+.++..++.++.|++.||+|||+++..+.++.+++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 339 (438)
T 3o7q_A 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALC 339 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3444444455444444444555555 444 59999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcc-h
Q 010733 86 FLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG-W 164 (502)
Q Consensus 86 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~-w 164 (502)
++..+.++.+.++.. ++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+. .| +
T Consensus 340 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~-----~g~~ 411 (438)
T 3o7q_A 340 LISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA-----AGNI 411 (438)
T ss_dssp HHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH-----HTSS
T ss_pred HHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH-----hcch
Confidence 999998887766555 8889999999999999999999865 888888877 6679999999999999997 77 9
Q ss_pred hHHHHHHHHHHHHHHH
Q 010733 165 RLAFHLVGLISVIVGV 180 (502)
Q Consensus 165 ~~~f~~~~~~~~~~~~ 180 (502)
+..|++.++..++..+
T Consensus 412 ~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 412 PTAELIPALCFAVIFI 427 (438)
T ss_dssp GGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887655444433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.6e-12 Score=127.19 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHhhccchhhHHHHh-hhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHH-----HHHHHHHH
Q 010733 10 LVNFAAIMERADESMLPGVYKEVG-AALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIA-----LGAFLWAA 83 (502)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~-----~~~~l~~~ 83 (502)
.+++..+............+|.+. +.++.+..+.+++.+...++..++.++.|++.||+|||+... .+.++.++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~ 366 (491)
T 4aps_A 287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGL 366 (491)
T ss_dssp HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 334344444444444555555544 446777788999999999999999999999999999987654 77777777
Q ss_pred HHHHHHhhh---------hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHH
Q 010733 84 ATFLVAFSS---------TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIA 154 (502)
Q Consensus 84 ~~~~~~~~~---------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 154 (502)
+.++..+.. +.+.+.+.-++.|++.+...+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~ 446 (491)
T 4aps_A 367 SFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYN 446 (491)
T ss_dssp HHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777766643 67778888899999999999999999999999999999999999999999999999988876
Q ss_pred hhccCCCcchhHHHHHHHHHHHHHHHHHHhhccC
Q 010733 155 STSFMGIPGWRLAFHLVGLISVIVGVLVHVYAND 188 (502)
Q Consensus 155 ~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 188 (502)
+ .++.+.|++.++..++..++.+.+.++
T Consensus 447 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 447 A------KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp G------SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred c------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 467778888888888777776665443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7.6e-11 Score=117.55 Aligned_cols=181 Identities=12% Similarity=0.083 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHH
Q 010733 10 LVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVA 89 (502)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~ 89 (502)
......+........+....|.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+....+++.+..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHH
Confidence 33333333444444455556778888888877777777888888999999999999999999999999888888777665
Q ss_pred hhh-----hHHHHHHH-HHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhc-cCCCc
Q 010733 90 FSS-----TFFQVAVS-RGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTS-FMGIP 162 (502)
Q Consensus 90 ~~~-----~~~~l~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-~~~~~ 162 (502)
... +...+... -+..+++ ....+....+.+|.+|.+.|++++|+......+|..+++.+...+.+.. .....
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~ 439 (491)
T 4gc0_A 361 TAFYTQAPGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHF 439 (491)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 432 22222222 2222222 2345677889999999999999999999999999999888776654320 00014
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccCCcc
Q 010733 163 GWRLAFHLVGLISVIVGVLVHVYANDPRC 191 (502)
Q Consensus 163 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 191 (502)
++.+.|++.++++++..+..+++.+|++.
T Consensus 440 ~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 440 HNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 66778889899888888877765555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-10 Score=112.23 Aligned_cols=132 Identities=12% Similarity=0.108 Sum_probs=101.5
Q ss_pred HHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 010733 243 AFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPS 322 (502)
Q Consensus 243 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (502)
....+|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+.. ..... ...+....... .+
T Consensus 19 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~----~~~~~----~~~~~~~~~~~----~~ 86 (375)
T 2gfp_A 19 YIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI----LVGMS----IFMLATLVAVT----TS 86 (375)
T ss_dssp HHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC----HHHHH----HHHHHHHHHHH----HH
T ss_pred HhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH----HHHHH----HHHHHHHHHHH----hc
Confidence 33457777778999999999999999999999999999999999999754 11111 11111111111 12
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 323 TAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
+.+.+.+..++.|++.+...+ ...+++.|..|+++|++++++.+....+|..++|.+.+.+.+.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGV-MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred cHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 344455667778888887777 7889999999999999999999999999999999999988765
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.2e-10 Score=113.14 Aligned_cols=146 Identities=14% Similarity=0.053 Sum_probs=105.3
Q ss_pred HHHHHHhhhhhhhHHHhHHHHHH-HhC------CChhHHHHHHHHHHHHHhhhhhhhHhHhhhh-hhcCCCchhHHHHHH
Q 010733 230 IVAQGVFGSFSGSAFAFAAMWLE-LIG------FSHKLTAFLMTLFVIAFCLGGLFGGKMGDIL-AQRLPDSGRVILSQI 301 (502)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~-~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 301 (502)
.....+.....+....+++.|++ ++| .++.+.+++.+...++..++.++.|+++||+ |||+ .+....
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~-----~~~~~~ 92 (524)
T 2xut_A 18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN-----TILWLS 92 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----HHHHHH
Confidence 33344444445566678888887 588 9999999999999999999999999999999 9984 222111
Q ss_pred HHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhH---HHhhhhhhhchhH
Q 010733 302 SAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYAL---DQSFESIPSSFAP 378 (502)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~~~~i~~ 378 (502)
... .+..+. .... +.+.+.+.+..++.|++.+...+ ...+++.|.+|+++|+++.+. .+...++|..++|
T Consensus 93 -~~~--~~~~~~-~~~~--~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~ 165 (524)
T 2xut_A 93 -LIY--CVGHAF-LAIF--EHSVQGFYTGLFLIALGSGGIKP-LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFAS 165 (524)
T ss_dssp -HHH--HHHHHH-HHHT--SSCHHHHHHHHHHHHHHHHTTHH-HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHH--HHHHHH-HHHh--cccHHHHHHHHHHHHHhccccch-hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111111 1111 21233345667778998888877 788999999999999876666 8888999999999
Q ss_pred HHHHHHHHH
Q 010733 379 AVVGILAQH 387 (502)
Q Consensus 379 ~~~g~l~~~ 387 (502)
.+.+.+.+.
T Consensus 166 ~~~~~l~~~ 174 (524)
T 2xut_A 166 LSMPLLLKN 174 (524)
T ss_dssp HTSTHHHHT
T ss_pred HHHHHHhcc
Confidence 999998875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 502 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 3e-14 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 7e-04 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 3e-07 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 72.4 bits (176), Expect = 3e-14
Identities = 39/393 (9%), Positives = 96/393 (24%), Gaps = 9/393 (2%)
Query: 6 LTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLS 65
+ + F + LG SI F + +S
Sbjct: 25 QIFLGIFFGYAAYYLVRKNF-ALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVS 83
Query: 66 AHHNRAHVIALGAFLWAAAT----FLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVAD 121
N + G L AA F+ +S+ + V L G + P +
Sbjct: 84 DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 143
Query: 122 STDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVL 181
+ RG +G + +L + + L+++ +
Sbjct: 144 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 203
Query: 182 VHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSFSG 241
+ + K D+ A+ + M +P +
Sbjct: 204 MRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYL 263
Query: 242 SAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQI 301
+ + + + G+ G + ++ ++ R
Sbjct: 264 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVF 323
Query: 302 SAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTS 361
V ++ + + + + ++G + E+ P++ +
Sbjct: 324 FMTLVT---IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLI-GLHALELAPKKAAGT 379
Query: 362 IYALDQSFESIPSSFAPAVVGILAQHVYGYKPI 394
F + S A + + +G+
Sbjct: 380 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 412
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 39.7 bits (91), Expect = 7e-04
Identities = 27/179 (15%), Positives = 51/179 (28%), Gaps = 6/179 (3%)
Query: 6 LTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLS 65
+ F ++ P KEV + L + I + +
Sbjct: 253 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 312
Query: 66 AHHNRAHVIALGAFLWAAATFLVAF--SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADST 123
NR L AT + + + + G + + I +
Sbjct: 313 FRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA 372
Query: 124 DETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLV 182
+ G A G+ L GYLG + + GW F ++ S++ +L+
Sbjct: 373 PKKAAGTAAGFTGLFGYLGGSVAAS----AIVGYTVDFFGWDGGFMVMIGGSILAVILL 427
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 50.2 bits (118), Expect = 3e-07
Identities = 33/355 (9%), Positives = 88/355 (24%), Gaps = 16/355 (4%)
Query: 35 ALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTF 94
H + G + S+ PL LS +
Sbjct: 37 INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG 96
Query: 95 FQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIA 154
+ + + I I + + A + + ++ G ++ +
Sbjct: 97 PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGAS 156
Query: 155 STSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDL 214
M + F L ++I+ VL+ D A + +L
Sbjct: 157 IVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALEL 216
Query: 215 ITDAKMVIKIPTFQIIVAQGVFGSFSGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCL 274
K+ +I + F F + ++ ++ T+ +
Sbjct: 217 FRQPKLWFLS--LYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNAS 274
Query: 275 GGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIM 334
F + + + + + + ++ ++A + +
Sbjct: 275 IMFFAPLIINRIGGKNALLLAGTIM------------SVRIIGSSFATSALEVVILKTLH 322
Query: 335 GLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSF-ESIPSSFAPAVVGILAQHV 388
+ + R +IY + F + + F + G + + +
Sbjct: 323 MFEVPFLLVGCF-KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 502 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.53 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.35 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-38 Score=313.61 Aligned_cols=374 Identities=14% Similarity=0.092 Sum_probs=285.6
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
+|.++..++++++..++++..++.+.|.++ |+|.|.+|+|++.+++.+++.++++++|+++||+|||+++.++.++.++
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 577788888888999999999999999876 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh----hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccC
Q 010733 84 ATFLVAFSS----TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFM 159 (502)
Q Consensus 84 ~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 159 (502)
+.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-- 179 (447)
T d1pw4a_ 102 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-- 179 (447)
T ss_dssp HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT--
T ss_pred HHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh--
Confidence 999998875 67889999999999999999999999999999999999999999999999999999998877641
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCC------cchhhhHHHHHHhhhhhhhhHHHHHHHH
Q 010733 160 GIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRR------PFWADIKDLITDAKMVIKIPTFQIIVAQ 233 (502)
Q Consensus 160 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (502)
.+||+.|++.+++.++..++.+.++++++........++.+... ...++........+..++++.++.....
T Consensus 180 --~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (447)
T d1pw4a_ 180 --NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA 257 (447)
T ss_dssp --CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHH
T ss_pred --hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHH
Confidence 58999999999998888888777666654433222211111100 0000111112234556777777766555
Q ss_pred HHhhhh-hhhHHHhHHHHHH-HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHH
Q 010733 234 GVFGSF-SGSAFAFAAMWLE-LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAA 311 (502)
Q Consensus 234 ~~~~~~-~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (502)
.++... .+....+.|.|++ .++++..+.+.......+..+++.++.|++.||+++++ +...... ........
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~--~~~~~~~~ 331 (447)
T d1pw4a_ 258 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN----RGATGVF--FMTLVTIA 331 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC----HHHHHHH--HHHHHHHH
T ss_pred hhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc----cccccch--hHHHHHHH
Confidence 544444 4566678999987 58999999999999999999999999999999998875 1121111 11111122
Q ss_pred HHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhh-chhHHHHHHHHHHHhc
Q 010733 312 VLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPS-SFAPAVVGILAQHVYG 390 (502)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~-~i~~~~~g~l~~~~~~ 390 (502)
........ ....+...++.+..|++.+...+ ....+..|.+|++.||++.|+.+.+.++++ .++|.+.|.+.|.. +
T Consensus 332 ~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~-g 408 (447)
T d1pw4a_ 332 TIVYWMNP-AGNPTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-G 408 (447)
T ss_dssp HHHTTSCC-TTCHHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-C
T ss_pred HHHHHhcc-cccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C
Confidence 22222222 22344445566677777766666 678889999999999999999999988755 56788999999874 4
Q ss_pred C
Q 010733 391 Y 391 (502)
Q Consensus 391 ~ 391 (502)
+
T Consensus 409 ~ 409 (447)
T d1pw4a_ 409 W 409 (447)
T ss_dssp S
T ss_pred h
Confidence 4
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=6.6e-29 Score=240.06 Aligned_cols=359 Identities=11% Similarity=0.016 Sum_probs=238.4
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHH-HhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWA 82 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~ 82 (502)
|.+.++.+.+.+++..+......+.+|. +.+++|.|++++|++.+++.+++.++++++|+++||+|||++++++..+..
T Consensus 5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~ 84 (417)
T d1pv7a_ 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84 (417)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 3456677778888888888888888886 677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHH----HHHHHHHHhhhhhhhhHHHHHHhhccCc--ccchhHHHHHHHHHhhhHhHHHHHHHHHHhh
Q 010733 83 AATFLVAFSSTFFQV----AVSRGLNGIGLAIVIPAIQSLVADSTDE--TNRGMAFGWLQLTGYLGSVLGGFCSVLIAST 156 (502)
Q Consensus 83 ~~~~~~~~~~~~~~l----~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 156 (502)
++..+..+..+.... ++.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 163 (417)
T d1pv7a_ 85 VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT- 163 (417)
T ss_dssp HTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc-
Confidence 999988887766543 4556666665555555554444444432 345667788888999999999999999987
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHh
Q 010733 157 SFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVF 236 (502)
Q Consensus 157 ~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (502)
.+|+..+........+..++.++..++++....+++++++...+...... .+..+++..+........
T Consensus 164 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 231 (417)
T d1pv7a_ 164 -----INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLA-------LELFRQPKLWFLSLYVIG 231 (417)
T ss_dssp -----HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHH-------HHHTTSSHHHHHHHHHHH
T ss_pred -----ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhccccccccc-------ccccccccccchhhhhHH
Confidence 46777777766666666666555444433333222222222222222111 111222222222222222
Q ss_pred hhhhh-hHHHhHHHHHH----HhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHH
Q 010733 237 GSFSG-SAFAFAAMWLE----LIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAA 311 (502)
Q Consensus 237 ~~~~~-~~~~~~~~~~~----~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (502)
....+ ......+.+.. +.+.+....+.......++..++..+.+++.||.++++ .... ...+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~-----~~~~------~~~~~~ 300 (417)
T d1pv7a_ 232 VSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-----ALLL------AGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHH-----HHHH------HHHHHH
T ss_pred HHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhccccccc-----chhh------hHHHHH
Confidence 22211 11222222222 23445666777888888999999999999999999984 1111 111111
Q ss_pred HHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHH-hhhhhhhchhHHHHHHHHHHH
Q 010733 312 VLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQ-SFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~~~~i~~~~~g~l~~~~ 388 (502)
+........++ .+...+..++.|++.+...+ ...++.+|.+|++.|+++.|+.. ....+|..++|.+.|++.|..
T Consensus 301 ~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~ 376 (417)
T d1pv7a_ 301 VRIIGSSFATS-ALEVVILKTLHMFEVPFLLV-GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376 (417)
T ss_dssp HHHHHHHTCCC-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhccccccc-cchhhHHHHHHHHHHHHHHH-HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112223 33344566677888777777 78899999999999999999865 556789999999999999985
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=1.4e-14 Score=138.24 Aligned_cols=154 Identities=9% Similarity=0.106 Sum_probs=137.6
Q ss_pred hhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhh
Q 010733 33 GAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVI 112 (502)
Q Consensus 33 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 112 (502)
.++.+.+....+...+...++..++.++.+++.||+|+|+++.++.++.+++.++..+.++.+.+++..++.|++.+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 330 (417)
T d1pv7a_ 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHH
Confidence 33445566677888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhccCcccchhHHHHH-HHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcc
Q 010733 113 PAIQSLVADSTDETNRGMAFGWL-QLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRC 191 (502)
Q Consensus 113 ~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 191 (502)
+...+++.|.+|+++|++..++. +....+|..++|.+.+++.+. .||+..|++.+++.++..++..+..+++++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-----IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 99999999999999999999985 456779999999999999998 899999999999988888887776655443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=9.1e-12 Score=120.08 Aligned_cols=175 Identities=16% Similarity=0.068 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHhhccchhhHH-HHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHH
Q 010733 7 TLVLVNFAAIMERADESMLPGVYK-EVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAAT 85 (502)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~ 85 (502)
.++.+....++............| .+.+.++.+..+.++..+...++..++.++.|++.||++||+..........+..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 329 (447)
T d1pw4a_ 250 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 329 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHH
Confidence 344444444444444434333344 4566788999999999999999999999999999999998765443333322222
Q ss_pred HHH---Hh--hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhh-hHhHHHHHHHHHHhhccC
Q 010733 86 FLV---AF--SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYL-GSVLGGFCSVLIASTSFM 159 (502)
Q Consensus 86 ~~~---~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~~~~~ 159 (502)
... .. ..+.+...+.-++.|++.+...+....+..|.+|+++|++++|+.+....+ |.+++|.+.+++.+.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~--- 406 (447)
T d1pw4a_ 330 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF--- 406 (447)
T ss_dssp HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 222 22 347788888888999998888999999999999999999999999887776 567789999999998
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhc
Q 010733 160 GIPGWRLAFHLVGLISVIVGVLVHVYA 186 (502)
Q Consensus 160 ~~~~w~~~f~~~~~~~~~~~~~~~~~~ 186 (502)
.||+..|++.++..++..++...+.
T Consensus 407 --~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 407 --FGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp --SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hChHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998887777766665543
|