Citrus Sinensis ID: 010776

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-
MISFFVGLIIGAIGVVAVEAAAVLYFIYKLNQKTKKVASFSPSPSSLDSSEVLDPQQSLEFAYKKQGYVWVLEPEKVPKEKFSKEQKKKKEFLEVYPVRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLASCEDKKRLEWFTKLNEDFHIYLTTLVAGYPSFTKPSTGMTGESPSMGLIADPMEKASRYDGSSSKVRLLWKKLARKASKPCIESKALSSYSGREERKVYEKFRPFQDSVLGATSVKSRTSKVPNCSGEENAEPLSSTFPRSKSQSQLSVVSDADSDDKFIVDEATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAVGDVSSDLLEGFEYFGKQLNISEGTFDGQDHKDQGDPKPG
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHcccccEEEEEEEEccEEEEEcccccccEEEccccEEEEEEccccccccccccccEEEEcccccccccccEEEEEccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccEEEEEEEccccccEEEccccccccccccEEEEEEEEEcccEEEEEEEEEEEccccccccEEEcccccccccccccccccccHHHcccccccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEcccccccccccHHHHccccEEEEccHHHEEEEcccEEEEEcccccEEEEEccccEEEEEcccccccccHHccccEEEEcccccEEcccEEEEEEEcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHcEEEEEEEcccccccEEccccccccccccEEEEEEEEEEEcEEEEEEEEEEEEEEccHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccccccccccccc
MISFFVGLIIGAIGVVAVEAAAVLYFIYKLNQktkkvasfspspssldssevldpqqsLEFAYKKQGYvwvlepekvpkekfSKEQKKKKeflevypvrkyaKIKHRALILtstdgsqtsfplkgceikavsasslssrkwakrfpikvenkssvlyngSKLIYIFLETSWEKEAWCKALRLASCEDKKRLEWFTKLNEDFHIYLTTLVagypsftkpstgmtgespsmgliadpmekasrydgsssKVRLLWKKLARKAskpcieskalssysgreerkvyekfrpfqdsvlgatsvksrtskvpncsgeenaeplsstfprsksqsqlsvvsdadsddkfIVDEATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSnmrtpsyigeiictdidtgnlppyvhgmrvlptdmnevwAFEVDIEYAGGVVLDVETRLEVRELDLHkgivdanseeagavgdvssDLLEGFEYFGKqlnisegtfdgqdhkdqgdpkpg
MISFFVGLIIGAIGVVAVEAAAVLYFIYKLNQKTKKVASFSPSPSSLDSSEVLDPQQSLEFAYKKQGYVWVLepekvpkekfskeqkkkkeflevypvrkyakiKHRALIltstdgsqtsfplKGCEIKAvsasslssrkwakrfpikvenkssvlyngsKLIYIFLETSWEKEAWCKALRLASCEDKKRLEWFTKLNEDFHIYLTTLVAGYPSFTKPSTGMTGESPSMGLIADPMEKASRYDGSSSKVRLLWKKLarkaskpcieskalssysgreerkvyekfrpfqdsvlgatsvksrtskvpncsgeenaeplsstfprsksqsqlSVVSDADSDDKFIVDEATLCWNLLIFRLFFDAKINVGVKSSIQARIQRAlsnmrtpsyIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGGVVLDVETRLEVRELDLHkgivdanseeagaVGDVSSDLLEGFEYFGKQLNisegtfdgqdhkdqgdpkpg
MISFFvgliigaigvvaveaaavlYFIYKLNQKTKKVAsfspspssldssEVLDPQQSLEFAYKKQGYVWVLEPEkvpkekfskeqkkkkeFLEVYPVRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLASCEDKKRLEWFTKLNEDFHIYLTTLVAGYPSFTKPSTGMTGESPSMGLIADPMEKASRYDGSSSKVRLLWKKLARKASKPCIESKALSSYSGREERKVYEKFRPFQDSVLGATSVKSRTSKVPNCSGEENAEPLSSTFPRSKSQSQLSVVSDADSDDKFIVDEATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAVGDVSSDLLEGFEYFGKQLNISEGTFDGQDHKDQGDPKPG
**SFFVGLIIGAIGVVAVEAAAVLYFIYKLNQ**************************LEFAYKKQGYVWVLE*****************EFLEVYPVRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSAS*LSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLASCEDKKRLEWFTKLNEDFHIYLTTLVAGYPSF**********************************RLLWKKL************************************************************************************KFIVDEATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAVGDVSSDLLEGFEYFGKQLNI*******************
*ISFFVGLIIGAIGVVAVEAAAVLYFIYKLNQ******************************YKKQGYVWVL**********************VYPVRKYAKIKHRALILTSTDGSQTSFPLKGCEIK**************RFPIKVENKSS**YNGSKLIYIFLETSWEKEAWCKALRL*****************************************************************************************************************************************************************VDEATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGGVVLDVETRLEVRELDLHK****************************************************
MISFFVGLIIGAIGVVAVEAAAVLYFIYKLNQKT*******************DPQQSLEFAYKKQGYVWVLEPEKVPKEKFSKEQKKKKEFLEVYPVRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLASCEDKKRLEWFTKLNEDFHIYLTTLVAGYPSFTKPSTGMTGESPSMGLIADPMEK*********KVRLLWKKLARKASKPCIESKALSSYSGREERKVYEKFRPFQDSVLGATS***************************************DSDDKFIVDEATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAVGDVSSDLLEGFEYFGKQLNISEGTFD*************
MISFFVGLIIGAIGVVAVEAAAVLYFIYKLNQ*************************SLEFAYKKQGYVWVLEPEKVPKEKFSKEQKKKKEFLEVYPVRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLASCEDKKRLEWFTKLNEDFHIYLTTLVAGYPSFTK******************************KVRL******R***********************************************************************************FIVDEATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAVGDVSSDLLEGFEYFGKQL*********************
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MISFFVGLIIGAIGVVAVEAAAVLYFIYKLNQKTKKVASFSPSPSSLDSSEVLDPQQSLEFAYKKQGYVWVLEPEKVPKEKFSKEQKKKKEFLEVYPVRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLASCEDKKRLEWFTKLNEDFHIYLTTLVAGYPSFTKPSTGMTGESPSMGLIADPMEKASRYDGSSSKVRLLWKKLARKASKPCIESKALSSYSGREERKVYEKFRPFQDSVLGATSVKSRTSKVPNCSGEENAEPLSSTFPRSKSQSQLSVVSDADSDDKFIVDEATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAVGDVSSDLLEGFEYFGKQLNISEGTFDGQDHKDQGDPKPG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query501
224118514 776 predicted protein [Populus trichocarpa] 0.964 0.622 0.572 1e-154
224116568 802 predicted protein [Populus trichocarpa] 0.972 0.607 0.590 1e-153
255569399 792 conserved hypothetical protein [Ricinus 0.952 0.602 0.575 1e-149
297737191 751 unnamed protein product [Vitis vinifera] 0.922 0.615 0.555 1e-144
359489932 1249 PREDICTED: uncharacterized protein LOC10 0.846 0.339 0.598 1e-142
356533705 789 PREDICTED: uncharacterized protein LOC10 0.908 0.576 0.533 1e-139
356561792 801 PREDICTED: uncharacterized protein LOC10 0.960 0.600 0.528 1e-132
449439535 792 PREDICTED: uncharacterized protein LOC10 0.954 0.603 0.500 1e-126
449514848 792 PREDICTED: uncharacterized LOC101209104 0.954 0.603 0.499 1e-125
297850174 797 hypothetical protein ARALYDRAFT_889192 [ 0.916 0.575 0.487 1e-123
>gi|224118514|ref|XP_002331381.1| predicted protein [Populus trichocarpa] gi|222873595|gb|EEF10726.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 292/510 (57%), Positives = 375/510 (73%), Gaps = 27/510 (5%)

Query: 2   ISFFVGLIIGAIGVVAVEAAAVLYFIYKLNQKT----KKVASFSPSPSSLDSSEVLDPQQ 57
           + F  G + G + +VA++A  V +FI +LN+KT    ++ AS S SP      + LDPQQ
Sbjct: 6   VIFGGGFVSGLLTLVALQALGVYFFIKRLNRKTHLQPQQQASHSSSPH-----QDLDPQQ 60

Query: 58  SLEFAYKKQGYVWVLEPEKVPK----EKFSKEQKKKKEFLEVYPVRKYAKIKHRALILTS 113
           SL +A+ K+G VWVLE +KVP     EK  K+QK+K+E LEV P+RK+A IK R+LILT 
Sbjct: 61  SLYYAFNKKGIVWVLESDKVPGNWPVEKVPKDQKRKREILEVTPIRKHANIKDRSLILTD 120

Query: 114 TDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEK 173
           + GS  + PL GC I+AVSA+SL SRKWA+RFPIKVE+K+S +YN SK ++IFLETSWEK
Sbjct: 121 SGGSHRAIPLTGCVIEAVSATSLPSRKWAERFPIKVESKTSPIYNASKTVFIFLETSWEK 180

Query: 174 EAWCKALRLASCEDKKRLEWFTKLNEDFHIYLTTLVAGYPSFTKPSTGMTGESPSMGLIA 233
           E+WCKALRLAS +D+++L WFT LNEDFH YLT+L  GYPSF K         PS+G  A
Sbjct: 181 ESWCKALRLASSDDQEKLNWFTNLNEDFHRYLTSLNTGYPSFMK---------PSVGFYA 231

Query: 234 DPMEKA-SRYDGSSSKVRLLWKKLARKASKPCIESKALSSYSGREERKVYEKFRPFQDSV 292
           +P+++A SR DGS SKV L WKKLARKASK  +E+K ++S  GREERK+ +K+ P QD  
Sbjct: 232 EPIDRASSRLDGSESKVLLFWKKLARKASKTSVENK-VTSLLGREERKINDKYHPSQDPA 290

Query: 293 L-GATSVKSRTSKVPNCSGEEN-AEPLSSTFPRSKSQSQLSVVSDADSDDKFIVDEATLC 350
             G+    + T K P  S EEN A P  STF R+ SQSQ+S +S+ D+D+K  +DE +LC
Sbjct: 291 FAGSVGKNAPTLKDPIISEEENVALPSPSTFSRASSQSQISTISNTDTDEKLNIDEGSLC 350

Query: 351 WNLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMR 410
           WNL+I RLFFDAK N  +KS  QA IQ  LSNMRTPSYIGE+ICTD++ GNLPPY+ G+R
Sbjct: 351 WNLIISRLFFDAKSNAKMKSLAQAWIQGTLSNMRTPSYIGEVICTDLELGNLPPYIDGIR 410

Query: 411 VLPTDMNEVWAFEVDIEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAVGDVSSDLL 470
           VLPTDMNEVWA+E DIEY GGVV  +ETRLEVR+L + KG+V+ +S  + ++ DVSSDLL
Sbjct: 411 VLPTDMNEVWAWEFDIEYCGGVVPGIETRLEVRDLVMEKGVVNTDS-GSSSIRDVSSDLL 469

Query: 471 EGFEYFGKQLNISEGTFDGQDHKDQGDPKP 500
           EGFE+ G+QLN+SEGT D  + KD+G+ KP
Sbjct: 470 EGFEHLGEQLNLSEGTVDSHEWKDEGNTKP 499

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224116568|ref|XP_002331929.1| predicted protein [Populus trichocarpa] gi|222874601|gb|EEF11732.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255569399|ref|XP_002525667.1| conserved hypothetical protein [Ricinus communis] gi|223535103|gb|EEF36785.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297737191|emb|CBI26392.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359489932|ref|XP_002266946.2| PREDICTED: uncharacterized protein LOC100244234 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356533705|ref|XP_003535400.1| PREDICTED: uncharacterized protein LOC100816218 [Glycine max] Back     alignment and taxonomy information
>gi|356561792|ref|XP_003549162.1| PREDICTED: uncharacterized protein LOC100812281 [Glycine max] Back     alignment and taxonomy information
>gi|449439535|ref|XP_004137541.1| PREDICTED: uncharacterized protein LOC101209104 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449514848|ref|XP_004164497.1| PREDICTED: uncharacterized LOC101209104 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297850174|ref|XP_002892968.1| hypothetical protein ARALYDRAFT_889192 [Arabidopsis lyrata subsp. lyrata] gi|297338810|gb|EFH69227.1| hypothetical protein ARALYDRAFT_889192 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query501
TAIR|locus:2030983 803 AT1G17820 [Arabidopsis thalian 0.491 0.306 0.433 3.1e-98
TAIR|locus:2197269 779 AT1G73200 [Arabidopsis thalian 0.518 0.333 0.468 5.3e-56
UNIPROTKB|F1NX58 587 LOC416541 "Uncharacterized pro 0.387 0.330 0.219 0.00014
ZFIN|ZDB-GENE-070615-7 1070 tex2 "testis expressed 2" [Dan 0.381 0.178 0.251 0.00049
UNIPROTKB|J3KRZ8 626 TEX2 "Testis-expressed sequenc 0.353 0.282 0.232 0.00049
RGD|1305112 634 Tex2 "testis expressed 2" [Rat 0.425 0.335 0.217 0.00056
MGI|MGI:102465 1128 Tex2 "testis expressed gene 2" 0.411 0.182 0.226 0.00089
TAIR|locus:2030983 AT1G17820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 511 (184.9 bits), Expect = 3.1e-98, Sum P(2) = 3.1e-98
 Identities = 115/265 (43%), Positives = 157/265 (59%)

Query:    26 FIYKLNQKTKKVAXXXXXXXXXXXXEVLDPQQSLEFAYKKQGYVWVLEPEXXXXXXXXXX 85
             F+Y L +  +K              +  +P++S++F   KQG VW+LE +          
Sbjct:    29 FMYLLKRLNRKRDRIESKPVSDPSIKDFNPRESIDFCINKQGVVWILELDEGLKNWMKEK 88

Query:    86 X----XXXXXFLEVYPVRKYAKIKHRALILTSTDGSQ--TSFPLKGCEIKAVSASSLSSR 139
                        LE++P+RK+A+IK   LIL+  D +Q  T+  L GC I+AVS S L +R
Sbjct:    89 LPKEQKRKRGLLEIHPLRKFARIKDHKLILSDADSTQSETTVSLIGCSIEAVSGSDLPTR 148

Query:   140 KWAKRFPIKVENK-SSVLYNGSKLIYIFLETSWEKEAWCKALRLASCEDKKRLEWF-TKL 197
             KWAKRFPIKVE+K S  LY G+++ YI+LETSWEKE+WCKALRLASCE+++R  W+ TKL
Sbjct:   149 KWAKRFPIKVESKISPALYKGNQVFYIYLETSWEKESWCKALRLASCENQERFIWYSTKL 208

Query:   198 NEDFHIYLTTLVAGYPSFTKPSTGMTGESPSMGLIADPMEKASRYDGSSSKVRLLWKKLA 257
              EDF  Y+T+L   YPSF KPS G + E+         ++K +R DGSSSKVRL  KK +
Sbjct:   209 KEDFRNYVTSLNVAYPSFMKPSLGFSFET---------LDKGNRTDGSSSKVRLFLKKFS 259

Query:   258 RKASKPCIESKALSSYSGREERKVY 282
             RK S    E +   S+ G    K +
Sbjct:   260 RKRSNR--EDRKTYSHHGSSSGKCF 282
GO:0005543 "phospholipid binding" evidence=IEA
GO:0007165 "signal transduction" evidence=ISS
GO:0035091 "phosphatidylinositol binding" evidence=ISS
TAIR|locus:2197269 AT1G73200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NX58 LOC416541 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070615-7 tex2 "testis expressed 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J3KRZ8 TEX2 "Testis-expressed sequence 2 protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305112 Tex2 "testis expressed 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:102465 Tex2 "testis expressed gene 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_scaffold_164000003
hypothetical protein (776 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query501
pfam1029691 pfam10296, DUF2404, Putative integral membrane pro 2e-23
>gnl|CDD|192522 pfam10296, DUF2404, Putative integral membrane protein conserved region (DUF2404) Back     alignment and domain information 
 Score = 93.8 bits (234), Expect = 2e-23
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query: 352 NLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRV 411
           N LI RLFFD      +++ I+ +IQ+ LS ++ P ++GE+  TDID G   P++    +
Sbjct: 1   NALIGRLFFDLLRTEALENFIREKIQKKLSKIKKPGFLGELTLTDIDVGTSAPFITNPSL 60

Query: 412 LPTDMNEVWAFEVDIEYAGGVVLDVETRL 440
                +     + DI Y GG+ L +ET++
Sbjct: 61  PELSPDGELWVDFDILYRGGLSLTIETKV 89

This domain is conserved from plants to humans. The function is not known. Length = 91

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 501
KOG2238 795 consensus Uncharacterized conserved protein TEX2, 100.0
PF1029691 DUF2404: Putative integral membrane protein conser 99.94
KOG2238 795 consensus Uncharacterized conserved protein TEX2, 98.71
cd0126096 PH_CNK Connector enhancer of KSR (Kinase suppresso 98.0
PF00169104 PH: PH domain; InterPro: IPR001849 The pleckstrin 98.0
cd0124691 PH_oxysterol_bp Oxysterol binding protein (OSBP) P 97.75
cd0125094 PH_centaurin Centaurin Pleckstrin homology (PH) do 97.69
cd01252125 PH_cytohesin Cytohesin Pleckstrin homology (PH) do 97.52
cd01233100 Unc104 Unc-104 pleckstrin homology (PH) domain. Un 97.32
cd0082196 PH Pleckstrin homology (PH) domain. Pleckstrin hom 97.31
cd01264101 PH_melted Melted pleckstrin homology (PH) domain. 97.26
cd01237106 Unc112 Unc-112 pleckstrin homology (PH) domain. Un 97.2
smart00233102 PH Pleckstrin homology domain. Domain commonly fou 97.15
cd01253104 PH_beta_spectrin Beta-spectrin pleckstrin homology 97.07
cd01238106 PH_Tec Tec pleckstrin homology (PH) domain. Tec pl 96.77
cd01219101 PH_FGD FGD (faciogenital dysplasia protein) plecks 96.61
cd01257101 PH_IRS Insulin receptor substrate (IRS) pleckstrin 96.54
cd0124498 PH_RasGAP_CG9209 RAS_GTPase activating protein (GA 96.53
cd01251103 PH_centaurin_alpha Centaurin alpha Pleckstrin homo 96.49
cd0090099 PH-like Pleckstrin homology-like domain. Pleckstri 96.39
cd0124791 PH_GPBP Goodpasture antigen binding protein (GPBP) 96.29
cd01263122 PH_anillin Anillin Pleckstrin homology (PH) domain 96.15
cd0124598 PH_RasGAP_CG5898 RAS GTPase-activating protein (GA 96.09
cd01235101 PH_SETbf Set binding factor Pleckstrin Homology (P 96.05
COG5038 1227 Ca2+-dependent lipid-binding protein, contains C2 96.0
cd0126595 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain 95.93
cd01218104 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain 95.76
cd01236104 PH_outspread Outspread Pleckstrin homology (PH) do 95.63
cd0122099 PH_CDEP Chondrocyte-derived ezrin-like domain cont 95.5
cd01241102 PH_Akt Akt pleckstrin homology (PH) domain. Akt pl 95.5
cd01266108 PH_Gab Gab (Grb2-associated binder) pleckstrin hom 95.49
cd01230117 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 95.06
cd01243122 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin 91.36
PF15413112 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE 91.08
PF01102122 Glycophorin_A: Glycophorin A; InterPro: IPR001195 89.37
cd01249104 PH_oligophrenin Oligophrenin Pleckstrin homology ( 89.26
cd01224109 PH_Collybistin Collybistin pleckstrin homology (PH 88.53
cd01261112 PH_SOS Son of Sevenless (SOS) Pleckstrin homology 87.51
cd01256110 PH_dynamin Dynamin pleckstrin homology (PH) domain 86.52
cd01254121 PH_PLD Phospholipase D (PLD) pleckstrin homology ( 82.67
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=8.5e-56  Score=479.63  Aligned_cols=461  Identities=38%  Similarity=0.561  Sum_probs=389.2

Q ss_pred             Ccc-chhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCcccCCccc--hhHHhhhccceEEEeCCC--
Q 010776            1 MIS-FFVGLIIGAIGVVAVEAAAVLYFIYKLNQKTKKVASFSPSPSSLDSSEVLDPQQ--SLEFAYKKQGYVWVLEPE--   75 (501)
Q Consensus         1 ~~~-~~~~f~~G~l~l~~~e~~~~~~~~~rl~~k~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~Wv~~~~--   75 (501)
                      ||+ |++|+|+|.++.+-++..+++|+.++++++ .++++..+..  +.+..+.+|.|  +.+|++++||++||.+++  
T Consensus         6 ~~~~fl~~~llg~vt~ls~~~~~~~~l~~~ln~~-~~k~esk~~~--d~~~~d~~~~q~~~~~~s~~pq~~~~i~el~e~   82 (795)
T KOG2238|consen    6 GFGVFLAGYLLGGVTFLPAELFGLLYLLKHLNYS-LDKIESKSES--DPSTKDFIPRQTRSIDFSINPQGVVKIQELEEQ   82 (795)
T ss_pred             cchhhhhhhhhcceeechHHHHHHHHhhhhhhHH-Hhhhcccccc--CcccccccccccccccccCCcccchhhhcchhh
Confidence            344 999999999999999999999999999988 5555555554  99999999888  999999999999999975  


Q ss_pred             CCCc--cccchHHHhhc---cceeeccceeeeEeeCceEEEecC-CCCccEEecCCcEEEEEeCCCccccccccccCeeE
Q 010776           76 KVPK--EKFSKEQKKKK---EFLEVYPVRKYAKIKHRALILTST-DGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKV  149 (501)
Q Consensus        76 ~~~k--~k~~ke~k~kk---~~~ev~P~~k~a~lk~~~L~L~~~-Dg~~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkv  149 (501)
                      ..++  -|.+++|+++.   .+.++.|+|.|+.++|+.++|.+. |+..+++-|.||.|.+++.+-++.++||++||||+
T Consensus        83 ~~~~~ssk~~~~q~K~~~~~~~~~~~~~r~~~~i~d~~t~~~~~~d~~~~~~~l~~~~v~~~s~~~l~v~~~~~~f~iK~  162 (795)
T KOG2238|consen   83 LLVKMSSKGPKTQKKQRYYHGLENAHPLRNFARIKDHKTALQDQIDPAQTPSFLLGCFVLAKSGSFLPVRKWHKRFPIKV  162 (795)
T ss_pred             hhhhhcccCchhhceeeccCCcchhhhhhhhhhhhhhhhhhhcccccccchhhhhhcccccccccchhhhhhcccceeec
Confidence            3333  29999999988   799999999999999999999995 99998999999999999999999999999999999


Q ss_pred             ecCCc--ccccCceEEEEEecCchhHHHHHHHHHHhhccccchhhH--HHHHHHHHHHHHhhhhccCCcccCCCCCCCCC
Q 010776          150 ENKSS--VLYNGSKLIYIFLETSWEKEAWCKALRLASCEDKKRLEW--FTKLNEDFHIYLTTLVAGYPSFTKPSTGMTGE  225 (501)
Q Consensus       150 e~~~~--~iy~~sKv~~~y~eTs~EKEsWc~aLr~As~~~k~~~~w--~~kl~~~F~~yl~sl~~~~p~~~k~s~g~~ge  225 (501)
                      +....  .+|.+..|+|+||+|+|+|++||++||+|.++++++..|  .++++.+|+.|...++.-||.||+|+.|    
T Consensus       163 ~s~~~~l~~~~~~~v~~~f~~ts~~k~s~~~~l~~~~~e~~~~~~~~~~~l~k~D~r~~~~~~~vIy~g~mk~~~~----  238 (795)
T KOG2238|consen  163 ESQISNLVTYIGNQVFLIFFETSWEKESWCKKLRLALDENQERFHWTCSALLKEDTRSLDAKLGVIYPGFMKPSSG----  238 (795)
T ss_pred             ccccceeEeeecceeeeeeeeccccccchhhhhcccCChhHhhhhhhhhhccCccchhhcccCCeeeecccCcccc----
Confidence            99988  789999999999999999999999999999999999999  6999999999999999999999999987    


Q ss_pred             CCCCCCCcccccccccCCCCchHHHHHHHHHHHhhcCCCcccccccccccchhhhhccccCCccccccccccccccCCCC
Q 010776          226 SPSMGLIADPMEKASRYDGSSSKVRLLWKKLARKASKPCIESKALSSYSGREERKVYEKFRPFQDSVLGATSVKSRTSKV  305 (501)
Q Consensus       226 ~~~~~~~~e~~dr~~~~dgs~sk~R~~~kklakk~s~~~~~~k~~~~~~~~~erK~~~k~~s~~~~~~~~s~~~a~~~~~  305 (501)
                           |+.|..|...   +.++++|++++++-.+...+++.-     -. ++++|.+..  ..|+.--.++++.....+ 
T Consensus       239 -----~s~e~~dk~t---t~s~~Vrl~g~~~~~k~~~k~v~k-----~a-~~dp~~~~~--~~q~s~~~~~s~i~l~pk-  301 (795)
T KOG2238|consen  239 -----FSSENLDKGT---THSSKVRLEGSMFSFKRSDKNVDK-----EA-RDDPTTNSS--LSQNSYSNGSSTISLDPK-  301 (795)
T ss_pred             -----CCcccccccc---ccceEEEecccceeEecccccccc-----hh-hcccccccc--ccccccccCCCceecCch-
Confidence                 6677777654   446999999999988765443321     11 555555331  333332111211000000 


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccc---cccccCCCCCccccCcchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHhcC
Q 010776          306 PNCSGEENAEPLSSTFPRSKSQSQL---SVVSDADSDDKFIVDEATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSN  382 (501)
Q Consensus       306 ~~~s~~~~~~~s~s~ss~~s~~~~~---s~~~d~ds~~~~~ide~t~WlNaLIgRLFfd~~rt~~l~~~I~~KIqKKL~k  382 (501)
                          ..++       -.+.....+.   ..+.+.|+.++...|+.|.|+|+++||+||++.+...+.+.+++|||+++++
T Consensus       302 ----~~a~-------~~~~~tk~pi~ir~~sh~~ds~skte~d~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~  370 (795)
T KOG2238|consen  302 ----RLAN-------NRHWKTKVPIQIRFGSHDRDSESKTETDEGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSK  370 (795)
T ss_pred             ----hhhc-------cccccccCceEEEecccccccccccccchhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhc
Confidence                0000       0011111111   1112666777777899999999999999999999966999999999999999


Q ss_pred             CCCCCCCCceEEeEeecCCCCCeeecccccCCCCCCcEEEEEEEEEcCceEEEEEeEEEeeccccccchhcccccccCCC
Q 010776          383 MRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAV  462 (501)
Q Consensus       383 IklPsFI~~I~VteIDlG~s~P~It~~rlp~ld~~G~~~vE~Dv~Y~Ggl~LtIeTkLnLr~~~lq~~i~~~~~~e~~s~  462 (501)
                      |++|.|++++.+..+|.|+.+|+||.+++.++.+.|.|.++.||.|.|+.++.|+|+|+.++.+.|.+|+..... +...
T Consensus       371 ~Rt~~~~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~di~y~~d~~~~i~~~v~~~e~~~~~~ie~~~~q-p~k~  449 (795)
T KOG2238|consen  371 MRTPSYIEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEIDIEYRGDLTIIIETRVDIREGSRQKGIEESLLQ-PKKI  449 (795)
T ss_pred             cccchhhhhhhhhhhhhcCCccccccceeEEeeccccccCccceeeccccccccccccchhhhhhcchhhhhhhC-cchh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999988 9999


Q ss_pred             CCCchhhhhhHHH-hhcccCCCCCCccCcccCCCCC
Q 010776          463 GDVSSDLLEGFEY-FGKQLNISEGTFDGQDHKDQGD  497 (501)
Q Consensus       463 g~v~s~l~~g~~~-~g~ql~~~~~~~~~~~~~~~~~  497 (501)
                      |.+++.+++++++ |-+|+..+..|++.++.+.+..
T Consensus       450 ~~~~s~l~~~~~d~~~kq~~~~~~t~~~~~~~~~~~  485 (795)
T KOG2238|consen  450 ELVKSPLLEGLKDPFEKQIWVPFSTVSAQDVESESI  485 (795)
T ss_pred             cccCchhhhhccchhhhceeeeccccCCCccccccc
Confidence            9999999999997 9999999999999999988654

>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1 Back     alignment and domain information
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only] Back     alignment and domain information
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain Back     alignment and domain information
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ] Back     alignment and domain information
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain Back     alignment and domain information
>cd00821 PH Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01264 PH_melted Melted pleckstrin homology (PH) domain Back     alignment and domain information
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain Back     alignment and domain information
>smart00233 PH Pleckstrin homology domain Back     alignment and domain information
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain Back     alignment and domain information
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain Back     alignment and domain information
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain Back     alignment and domain information
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain Back     alignment and domain information
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain Back     alignment and domain information
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain Back     alignment and domain information
>cd00900 PH-like Pleckstrin homology-like domain Back     alignment and domain information
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain Back     alignment and domain information
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] Back     alignment and domain information
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain Back     alignment and domain information
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain Back     alignment and domain information
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain Back     alignment and domain information
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain Back     alignment and domain information
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain Back     alignment and domain information
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain Back     alignment and domain information
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C Back     alignment and domain information
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane Back     alignment and domain information
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain Back     alignment and domain information
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain Back     alignment and domain information
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query501
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 55.6 bits (133), Expect = 3e-08
 Identities = 83/588 (14%), Positives = 168/588 (28%), Gaps = 221/588 (37%)

Query: 17  AVEAAAVLYFIYKLNQKTKKVASFSPSPSSLDSSEVLDPQQSLEFAYKKQGYVWVLEPEK 76
           AV     L++   L+++ + V  F          EVL              Y +++ P K
Sbjct: 60  AVSGTLRLFWTL-LSKQEEMVQKFV--------EEVLRIN-----------YKFLMSPIK 99

Query: 77  V-------PKEKFSKEQKKKKEFLEVYP------VRKYAKIKHRALILTST-----DGSQ 118
                       + +++ +     +V+       ++ Y K++   L L        DG  
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-- 157

Query: 119 TSFPLKGCEIKAV-SASSLSSRKWAKRFP-----IKVENKSS---VLYNGSKLIY----- 164
               + G   K   +     S K   +       + ++N +S   VL    KL+Y     
Sbjct: 158 ----VLGSG-KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 165 ----------IFLETSWEKEA---------WCKALR-LASCEDKKRLEWFTKLNEDFH-- 202
                     I L     +           +   L  L + ++ K    F     +    
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----NLSCK 267

Query: 203 IYLTT------------------LVAGYPSFTKPST--------GMTGE---------SP 227
           I LTT                  L     + T                +         +P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 228 -SMGLIADPM-EKASRYDGSSSKVRLLWKKLARKASKPCIES--KALSSYSGREERKVYE 283
             + +IA+ + +  + +D         WK +        IES    L      E RK+++
Sbjct: 328 RRLSIIAESIRDGLATWDN--------WKHVNCDKLTTIIESSLNVLEPA---EYRKMFD 376

Query: 284 KFRPFQDSVLGATSVKSRTSKVPNCSGEENAEPLSSTFPRSKSQSQLSVV--SDADSDDK 341
           +   F  S             +P           +           LS++      SD  
Sbjct: 377 RLSVFPPSA-----------HIP-----------TIL---------LSLIWFDVIKSDVM 405

Query: 342 FIVDEATLCWNLLIFR-----------LFFDAKINVGVKSSIQARIQRALSNMRTPSYIG 390
            +V++  L    L+ +           ++ + K+ +  + ++   I    +  +      
Sbjct: 406 VVVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK------ 457

Query: 391 EIICTDIDTGNLPP-----YVH-GMRVLPTDMNEVWA-FEVDIEYAGGVVLD---VETRL 440
                D D    P      Y H G  +   +  E    F +       V LD   +E ++
Sbjct: 458 ---TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM-------VFLDFRFLEQKI 507

Query: 441 EVRELDLHKGIVDANSEEAGAVGDVSSDLLEGFEYFGKQLNISEGTFD 488
                  H            A G +  + L+  +++   +  ++  ++
Sbjct: 508 R------HDSTA------WNASGSI-LNTLQQLKFYKPYICDNDPKYE 542

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query501
2dkp_A128 Pleckstrin homology domain-containing family A mem 98.22
2w2x_D124 1-phosphatidylinositol-4,5-bisphosphate phosphodie 98.09
1fgy_A127 GRP1; PH domain, signaling protein; HET: 4IP; 1.50 98.07
2yry_A122 Pleckstrin homology domain-containing family A mem 98.05
1v89_A118 Hypothetical protein KIAA0053; pleckstrin homology 98.04
2i5f_A109 Pleckstrin; PH domain, protein-inositol phosphate 98.03
1u5d_A108 SKAP55, SRC kinase-associated phosphoprotein of 55 98.03
4a6h_A120 Phosphatidylinositol 4,5-bisphosphate-binding Pro 97.97
1x05_A129 Pleckstrin; PH domain, structural genomics, NPPSFA 97.95
1upq_A123 PEPP1; PH domain, phosphoinositide binding, signal 97.92
2d9y_A117 Pleckstrin homology domain-containing protein fami 97.91
1v88_A130 Oxysterol binding protein-related protein 8; vesic 97.9
3rcp_A103 Pleckstrin homology domain-containing family A ME; 97.88
1wgq_A109 FYVE, rhogef and PH domain containing 6; ethanol d 97.88
2cof_A107 Protein KIAA1914; PH domain, structural genomics, 97.82
4h8s_A407 DCC-interacting protein 13-beta; BAR domain, pleck 97.81
1pls_A113 Pleckstrin homology domain; phosphorylation; NMR { 97.74
1fao_A126 Dual adaptor of phosphotyrosine and 3- phosphoinos 97.69
1x1g_A129 Pleckstrin 2; PH domain, structural genomics, rike 97.65
1btn_A106 Beta-spectrin; signal transduction protein; HET: I 97.64
2dn6_A115 KIAA0640 protein; PH domain, structural genomics, 97.62
2p0d_A129 RHO GTPase-activating protein 9; protein-phosphoin 97.61
2ys3_A137 UNC-112-related protein 2; PH domain, kindlin-3, s 97.57
2rsg_A94 Collagen type IV alpha-3-binding protein; pleckstr 97.57
2lul_A164 Tyrosine-protein kinase TEC; structural genomics, 97.56
1wi1_A126 Calcium-dependent activator protein for secretion, 97.56
2da0_A114 130-kDa phosphatidylinositol 4,5-biphosphate- depe 97.55
1wg7_A150 Dedicator of cytokinesis protein 9; pleckstrin hom 97.54
1v5u_A117 SBF1, SET binding factor 1; MTMR5, the pleckstrin 97.51
1u5f_A148 SRC-associated adaptor protein; PH domain of SKAP- 97.5
3cxb_B112 Pleckstrin homology domain-containing family M mem 97.46
2fjl_A150 1-phosphatidylinositol-4,5-bisphosphate phosphodie 97.43
1eaz_A125 Tandem PH domain containing protein-1; lipid-bindi 97.4
2coc_A112 FYVE, rhogef and PH domain containing protein 3; s 97.39
3aj4_A112 Pleckstrin homology domain-containing family B ME; 97.37
2d9x_A120 Oxysterol binding protein-related protein 11; PH d 97.36
2y7b_A134 Actin-binding protein anillin; cell cycle; 1.90A { 97.32
1x1f_A149 Signal-transducing adaptor protein 1; docking prot 97.32
1dyn_A125 Dynamin; signal transduction protein; 2.20A {Homo 97.3
1u5e_A211 SRC-associated adaptor protein; novel dimerization 97.29
2cod_A115 Centaurin-delta 1; ARF GAP and RHO GAP with ankyri 97.26
4f7h_A173 Fermitin family homolog 2; beta-barrel, membrane b 97.21
2dtc_A126 RAL guanine nucleotide exchange factor ralgps1A; P 97.2
2j59_M168 RHO-GTPase activating protein 10; ARF, ARF1, ARFBD 97.19
2dhk_A119 TBC1 domain family member 2; PH domain, paris-1, s 97.19
1wjm_A123 Beta-spectrin III; PH domain, signal transduction, 97.18
2r09_A347 Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph 97.17
3a8p_A263 T-lymphoma invasion and metastasis-inducing protei 97.07
3tca_A291 Amyloid beta A4 precursor protein-binding family 1 97.06
1dro_A122 Beta-spectrin; cytoskeleton; NMR {Drosophila melan 96.99
3tfm_A228 Myosin X; split PH domain, motor protein; 2.53A {R 96.97
2q13_A385 DCC-interacting protein 13 alpha; APPL1, BAR domai 96.97
1v5p_A126 Pleckstrin homology domain-containing, family A; T 96.86
1btk_A169 Bruton'S tyrosine kinase; transferase, PH domain, 96.85
3pp2_A124 RHO GTPase-activating protein 27; PH domain, GTPas 96.8
1unq_A125 RAC-alpha serine/threonine kinase; transferase, pl 96.8
4bbk_A165 Kindlin-1, fermitin family homolog 1; PH domain, c 96.74
2rov_A117 RHO-associated protein kinase 2; ATP-binding, coil 96.67
2rlo_A128 Centaurin-gamma 1; split PH domain, alternative sp 96.5
1qqg_A264 IRS-1, insulin receptor substrate 1; beta-sandwhic 95.95
2d9v_A130 Pleckstrin homology domain-containing protein fami 95.9
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 95.62
4gmv_A281 RAS-associated and pleckstrin homology domains-CO 95.47
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 94.88
3a8n_A279 TIAM-1, T-lymphoma invasion and metastasis-inducin 94.65
1zc3_B113 Exocyst complex protein EXO84; exocytosis, small G 91.95
3hk0_A256 Growth factor receptor-bound protein 10; GRB10, RA 91.22
3ky9_A587 Proto-oncogene VAV; calponin homology domain, DBL 87.81
2d9w_A127 Docking protein 2; PH domain, structural genomics, 87.47
2pz1_A466 RHO guanine nucleotide exchange factor 4; helical 86.95
2vrw_B406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 85.88
2dfk_A402 Collybistin II; DH domain, PH domain, cell cycle; 85.73
1dbh_A354 Protein (human SOS 1); guanine nucleotide exchange 82.42
2z0q_A346 XPLN, RHO guanine nucleotide exchange factor 3; DH 81.22
2lg1_A185 A-kinase anchor protein 13; metal binding protein; 80.8
2l2t_A44 Receptor tyrosine-protein kinase ERBB-4; transmemb 80.64
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Back     alignment and structure
Probab=98.22  E-value=1.1e-05  Score=67.81  Aligned_cols=79  Identities=16%  Similarity=0.282  Sum_probs=62.8

Q ss_pred             eeeeEeeCceEEEecCCCC---ccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCchhHHH
Q 010776           99 RKYAKIKHRALILTSTDGS---QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEA  175 (501)
Q Consensus        99 ~k~a~lk~~~L~L~~~Dg~---~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~EKEs  175 (501)
                      +||++|+++.|+.......   ..+|+|.+|.|..+....    .-.++|.+.|.+++      .+++||+++|--|.+.
T Consensus        40 ~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~----~~~~~~~F~i~~~~------~r~~~l~a~s~~e~~~  109 (128)
T 2dkp_A           40 KRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSED----HINRKYAFKAAHPN------MRTYYFCTDTGKEMEL  109 (128)
T ss_dssp             EEEEEEETTEEEEESSTTCCSEEEEECGGGSEEEECCGGG----CCSSCSEEEEECSS------SCCEEEECSSHHHHHH
T ss_pred             eEEEEEeCCEEEEECCCCCcccceEEEcCceEEEEcCCcc----cCCCCeEEEEEcCC------CCEEEEEcCCHHHHHH
Confidence            5899999999999976332   468999999988876422    22467889998663      4678899999999999


Q ss_pred             HHHHHHHhhccc
Q 010776          176 WCKALRLASCED  187 (501)
Q Consensus       176 Wc~aLr~As~~~  187 (501)
                      |..+|+.|+...
T Consensus       110 Wi~al~~a~~~~  121 (128)
T 2dkp_A          110 WMKAMLDAALVQ  121 (128)
T ss_dssp             HHHHHHHHHSCC
T ss_pred             HHHHHHHHHhcc
Confidence            999999887653
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A Back     alignment and structure
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* Back     alignment and structure
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Back     alignment and structure
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A Back     alignment and structure
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Back     alignment and structure
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Back     alignment and structure
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Back     alignment and structure
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Back     alignment and structure
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens} Back     alignment and structure
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Back     alignment and structure
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A Back     alignment and structure
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Back     alignment and structure
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Back     alignment and structure
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Back     alignment and structure
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Back     alignment and structure
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Back     alignment and structure
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Back     alignment and structure
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1 Back     alignment and structure
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Back     alignment and structure
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens} Back     alignment and structure
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A Back     alignment and structure
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Back     alignment and structure
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A* Back     alignment and structure
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus} Back     alignment and structure
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Back     alignment and structure
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A* Back     alignment and structure
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A Back     alignment and structure
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus} Back     alignment and structure
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1 Back     alignment and structure
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Back     alignment and structure
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Back     alignment and structure
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Back     alignment and structure
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Back     alignment and structure
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens} Back     alignment and structure
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A Back     alignment and structure
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus} Back     alignment and structure
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus} Back     alignment and structure
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Back     alignment and structure
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A* Back     alignment and structure
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} Back     alignment and structure
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B* Back     alignment and structure
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens} Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Back     alignment and structure
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Back     alignment and structure
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Back     alignment and structure
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Back     alignment and structure
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query501
d2dyna_111 Dynamin {Human (Homo sapiens) [TaxId: 9606]} 98.2
d2fjla1101 Phosphoinositide phospholipase C, PLC-gamma-1 {Rat 98.18
d1v89a_118 Rho-GTPase-activating protein 25 (KIAA0053) {Human 98.17
d1faoa_100 Dual adaptor of phosphotyrosine and 3-phosphoinosi 98.0
d2cofa195 KIAA1914 {Human (Homo sapiens) [TaxId: 9606]} 97.95
d1upqa_107 Phosphoinositol 3-phosphate binding protein-1, PEP 97.93
d1fgya_127 Grp1 {Mouse (Mus musculus) [TaxId: 10090]} 97.79
d1wgqa_109 FYVE, RhoGEF and PH domain containing protein 6, F 97.7
d2elba2101 DCC-interacting protein 13-alpha, APPL1 {Human (Ho 97.69
d1u5da1106 Src kinase-associated phosphoprotein SKAP55 (SCAP1 97.66
d1u5fa1111 Src-associated adaptor protein Skap2 {Mouse (Mus m 97.64
d2i5fa1104 Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} 97.62
d2coda1102 Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96 97.62
d1u5ea1209 Src-associated adaptor protein Skap2 {Mouse (Mus m 97.6
d1v88a_130 Oxysterol binding protein-related protein 8 (ORP-8 97.57
d2coca199 FYVE, RhoGEF and PH domain containing protein 3, F 97.48
d2j59m1133 Rho GTPase-activating protein 21 {Human (Homo sapi 97.45
d1eaza_103 Tapp1 {Human (Homo sapiens) [TaxId: 9606]} 97.42
d1v5ua_117 SET binding factor 1, Sbf1 {Mouse (Mus musculus) [ 97.39
d1omwa2119 G-protein coupled receptor kinase 2 (beta-adrenerg 97.32
d1x1ga1116 Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} 97.31
d1btna_106 beta-spectrin {Mouse (Mus musculus), brain [TaxId: 97.24
d1plsa_113 Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} 97.16
d1v5pa_126 Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} 97.05
d1wg7a_150 Dedicator of cytokinesis protein 9, DOCK9 {Human ( 96.92
d1x1fa1136 Signal-transducing adaptor protein 1, STAP-1 {Huma 96.85
d1wi1a_126 Calcium-dependent activator protein for secretion, 96.79
d1wjma_123 beta-spectrin {Human (Homo sapiens), brain 2 isofo 96.78
d2coaa1112 Protein kinase c, d2 type {Human (Homo sapiens) [T 96.65
d1droa_122 beta-spectrin {Fruit fly (Drosophila melanogaster) 96.38
d2dfka2162 Rho guanine nucleotide exchange factor 9, Collybis 96.31
d1unqa_118 Rac-alpha serine/threonine kinase {Human (Homo sap 96.27
d1qqga1103 Insulin receptor substrate 1, IRS-1 {Human (Homo s 95.79
d1btka_169 Bruton's tyrosine kinase {Human (Homo sapiens) [Ta 95.59
d1zc3b1109 Exocyst complex protein EXO84 {Rat (Rattus norvegi 95.5
d1v5ma_136 SH2 and PH domain-containing adapter protein APS { 94.9
d1v61a_132 Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [ 93.33
d1dbha2133 Son of sevenless-1 (sos-1) {Human (Homo sapiens) [ 90.67
d1w1ha_147 3-phosphoinositide dependent protein kinase-1 {Hum 90.35
d1ki1b2142 GEF of intersectin {Human (Homo sapiens) [TaxId: 9 88.3
d1kz7a2147 Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId 84.86
d1ntya2121 Triple functional domain protein TRIO {Human (Homo 84.67
d1maia_119 Phospholipase C delta-1 {Rat (Rattus norvegicus) [ 84.2
>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.6e-06  Score=69.33  Aligned_cols=84  Identities=12%  Similarity=0.164  Sum_probs=70.1

Q ss_pred             cceeeeEeeCceEEEecCCC---CccEEecCCcEEEEEeCCCccccccccccCeeEecC-CcccccCceEEEEEecCchh
Q 010776           97 PVRKYAKIKHRALILTSTDG---SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENK-SSVLYNGSKLIYIFLETSWE  172 (501)
Q Consensus        97 P~~k~a~lk~~~L~L~~~Dg---~~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~-~~~iy~~sKv~~~y~eTs~E  172 (501)
                      --++|++|+++.|...+.+-   ....|+|.+|.|..|...     +-.++|.++|.++ .+.++.+.+++||.+||-=|
T Consensus        21 WkkRwFvL~~~~L~yyk~~~~~~~~~~i~l~~~~v~~~~~~-----~~~~~~~F~l~~~~~~~~~~~~r~~~l~a~s~ed   95 (111)
T d2dyna_          21 SKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKG-----FMSSKHIFALFNTEQRNVYKDYRQLELACETQEE   95 (111)
T ss_dssp             SEEEEEEEESSEEEEESSTTCCCEEEEEECTTEEEEEECCC-----STTCSEEEEEEESSCSCSBTTBSSEEEEESSHHH
T ss_pred             ceEEEEEEECCEEEEEcchhhcccccccccccceeEeeccc-----cccccccEEeeeccccccccCceeEEEECCCHHH
Confidence            34689999999999996632   246899999999988653     3456889999987 56678889999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 010776          173 KEAWCKALRLASC  185 (501)
Q Consensus       173 KEsWc~aLr~As~  185 (501)
                      .+.|..||+.|+.
T Consensus        96 ~~~W~~al~~A~~  108 (111)
T d2dyna_          96 VDSWKASFLRAGV  108 (111)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999999875
>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} Back     information, alignment and structure
>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} Back     information, alignment and structure
>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure