Citrus Sinensis ID: 010874
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 498 | 2.2.26 [Sep-21-2011] | |||||||
| Q00081 | 470 | Glucose-1-phosphate adeny | N/A | no | 0.875 | 0.927 | 0.788 | 0.0 | |
| P55231 | 521 | Glucose-1-phosphate adeny | yes | no | 0.979 | 0.936 | 0.713 | 0.0 | |
| Q9SIK1 | 523 | Probable glucose-1-phosph | no | no | 0.931 | 0.887 | 0.729 | 0.0 | |
| P55233 | 522 | Glucose-1-phosphate adeny | N/A | no | 0.969 | 0.925 | 0.646 | 0.0 | |
| P55230 | 518 | Glucose-1-phosphate adeny | no | no | 0.827 | 0.795 | 0.740 | 0.0 | |
| P55242 | 519 | Glucose-1-phosphate adeny | N/A | no | 0.971 | 0.932 | 0.641 | 0.0 | |
| P55229 | 522 | Glucose-1-phosphate adeny | no | no | 0.823 | 0.785 | 0.680 | 1e-174 | |
| P12299 | 522 | Glucose-1-phosphate adeny | N/A | no | 0.859 | 0.819 | 0.668 | 1e-174 | |
| P30524 | 523 | Glucose-1-phosphate adeny | N/A | no | 0.859 | 0.818 | 0.666 | 1e-173 | |
| P55243 | 483 | Glucose-1-phosphate adeny | N/A | no | 0.893 | 0.921 | 0.631 | 1e-168 |
| >sp|Q00081|GLGL1_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/436 (78%), Positives = 394/436 (90%)
Query: 59 KVKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATP 118
K+KPGVAY+V+T+++ + + + PRLERRR +PK+VAA+ILGGG GTKLFPLT R ATP
Sbjct: 2 KIKPGVAYSVITTENDTQTVFVDMPRLERRRANPKDVAAVILGGGEGTKLFPLTSRTATP 61
Query: 119 AVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVL 178
AVPV GCYRLIDIPMSNCINS INKIFVLTQ+NSA LNRHIARTYFGNG +FGDGFVEVL
Sbjct: 62 AVPVGGCYRLIDIPMSNCINSAINKIFVLTQYNSAPLNRHIARTYFGNGVSFGDGFVEVL 121
Query: 179 AATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV 238
AATQTPGE+GK WFQGTADAVR+F WVFEDAKN+NIEN+ +L GDHLYRMDYM+ +Q+H+
Sbjct: 122 AATQTPGEAGKKWFQGTADAVRKFIWVFEDAKNKNIENIVVLSGDHLYRMDYMELVQNHI 181
Query: 239 DRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQE 298
DR+ADIT+SCA +SRASD+GLVKID+ GR+ QFAEKP G +LKAMQVDT+L+G SPQ+
Sbjct: 182 DRNADITLSCAPAEDSRASDFGLVKIDSRGRVVQFAEKPKGFDLKAMQVDTTLVGLSPQD 241
Query: 299 ARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDI 358
A+K PY+ASMGVYVFK DVL KLL+W YPTSNDFGSEIIPAAI +++VQAYIF+DYWEDI
Sbjct: 242 AKKSPYIASMGVYVFKTDVLLKLLKWSYPTSNDFGSEIIPAAIDDYNVQAYIFKDYWEDI 301
Query: 359 GTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLREC 418
GTIKSFY A++ALT+E P F FYDPKTPFYTSPRFLPPTKIDNC+IKDAIISHGCFLR+C
Sbjct: 302 GTIKSFYNASLALTQEFPEFQFYDPKTPFYTSPRFLPPTKIDNCKIKDAIISHGCFLRDC 361
Query: 419 TVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCII 478
+VEHSIVGERSRLD GVELKDT M+GADYYQTESEIASLLAEGKVPIG+G NTKIR CII
Sbjct: 362 SVEHSIVGERSRLDCGVELKDTFMMGADYYQTESEIASLLAEGKVPIGIGENTKIRKCII 421
Query: 479 DKNVKIGKDVVIVNKD 494
DKN KIGK+V I+NKD
Sbjct: 422 DKNAKIGKNVSIINKD 437
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 2EC: 7 |
| >sp|P55231|GLGL3_ARATH Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/496 (71%), Positives = 404/496 (81%), Gaps = 8/496 (1%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEK-RDEK 59
MDSCC T V A K K +N GE+I+GSV K L ++K R+ K
Sbjct: 1 MDSCC-NFSLGTKTVLA-KDSFKNVENKFLGEKIKGSV-----LKPFSSDLSSKKFRNRK 53
Query: 60 VKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPA 119
++PGVAYA+ TSK+ E + P ERRR DPKNVAAIILGGG G KLFPLT RAATPA
Sbjct: 54 LRPGVAYAIATSKNAKEALKNQPSMFERRRADPKNVAAIILGGGDGAKLFPLTKRAATPA 113
Query: 120 VPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLA 179
VPV GCYR+IDIPMSNCINS INKIFVLTQFNSASLNRH+ARTYFGNG NFGDGFVEVLA
Sbjct: 114 VPVGGCYRMIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTYFGNGINFGDGFVEVLA 173
Query: 180 ATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD 239
ATQTPGE+GK WFQGTADAVR+F WVFEDAKNRNIEN+ IL GDHLYRM+YMDF+Q HVD
Sbjct: 174 ATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENIIILSGDHLYRMNYMDFVQHHVD 233
Query: 240 RDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299
ADIT+SCA V ESRAS+YGLV ID GR+ F+EKP+G +LK+MQ DT++ G S QEA
Sbjct: 234 SKADITLSCAPVDESRASEYGLVNIDRSGRVVHFSEKPTGIDLKSMQTDTTMHGLSHQEA 293
Query: 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIG 359
K PY+ASMGVY FK + L KLL WRYP+SNDFGSEIIPAAI +H+VQ YI+RDYWEDIG
Sbjct: 294 AKSPYIASMGVYCFKTEALLKLLTWRYPSSNDFGSEIIPAAIKDHNVQGYIYRDYWEDIG 353
Query: 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECT 419
TIKSFYEAN+AL +E P F FYD TPFYTSPRFLPPTK + CRI +++ISHGCFL EC+
Sbjct: 354 TIKSFYEANIALVEEHPKFEFYDQNTPFYTSPRFLPPTKTEKCRIVNSVISHGCFLGECS 413
Query: 420 VEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479
++ SI+GERSRLDYGVEL+DT+MLGAD YQTESEIASLLAEG VPIG+GR+TKIR CIID
Sbjct: 414 IQRSIIGERSRLDYGVELQDTLMLGADSYQTESEIASLLAEGNVPIGIGRDTKIRKCIID 473
Query: 480 KNVKIGKDVVIVNKDE 495
KN KIGK+VVI+NKD+
Sbjct: 474 KNAKIGKNVVIMNKDD 489
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|Q9SIK1|GLGL4_ARATH Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/469 (72%), Positives = 399/469 (85%), Gaps = 5/469 (1%)
Query: 26 DNALWGERIRGSVSNDGCTKQLKKSLKAEK-RDEKVKPGVAYAVMTSKHPNEVMTLAPPR 84
+N +GE+ +N+G K+ L ++K R++K K GV YAV TS +P + MT+
Sbjct: 25 ENRFYGEK----NNNNGLCKRFGSDLGSKKFRNQKFKHGVVYAVATSDNPKKAMTVKTSM 80
Query: 85 LERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI 144
ERR+VDP+NVAAIILGGG G KLFPLT+RAATPAVPV GCYRLIDIPMSNCINS INKI
Sbjct: 81 FERRKVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKI 140
Query: 145 FVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTW 204
FVLTQFNSASLNRH+ARTYFGNG NFG GFVEVLAATQTPGE+GK WFQGTADAVR+F W
Sbjct: 141 FVLTQFNSASLNRHLARTYFGNGINFGGGFVEVLAATQTPGEAGKKWFQGTADAVRKFLW 200
Query: 205 VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI 264
VFEDAKNRNIEN+ IL GDHLYRM+YMDF+QSHVD +ADIT+SCA V ESRAS++GLVKI
Sbjct: 201 VFEDAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSESRASNFGLVKI 260
Query: 265 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324
D GR+ F+EKP+G +LK+MQ DT++LG S QEA PY+ASMGVY FK + L LL
Sbjct: 261 DRGGRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYIASMGVYCFKTEALLNLLTR 320
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
+YP+SNDFGSE+IPAAI +HDVQ YIFRDYWEDIGTIK+FYEAN+AL +E P F FYDP+
Sbjct: 321 QYPSSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKTFYEANLALVEERPKFEFYDPE 380
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG 444
TPFYTSPRFLPPTK + CR+ D+IISHGCFLREC+V+ SI+GERSRLDYGVEL+DT+MLG
Sbjct: 381 TPFYTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSIIGERSRLDYGVELQDTLMLG 440
Query: 445 ADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493
ADYYQTESEIASLLAEGKVPIG+G++TKIR CIIDKN KIGK+V+I+NK
Sbjct: 441 ADYYQTESEIASLLAEGKVPIGIGKDTKIRKCIIDKNAKIGKNVIIMNK 489
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55233|GLGL1_BETVU Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/500 (64%), Positives = 394/500 (78%), Gaps = 17/500 (3%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSL-KAEKRDEK 59
MD+ + N H+ +++G GERI S+ K L+ + E +
Sbjct: 1 MDASAAAINVNAHL-------TEVGKKRFLGERISQSLKG----KDLRALFSRTESKGRN 49
Query: 60 V-KPGVAYAVMTS---KHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRA 115
V KPGVA++V+TS + E + P E + DPKNVAAI+LGGGAGT+LFPLT R
Sbjct: 50 VNKPGVAFSVLTSDFNQSVKESLKYEPALFESPKADPKNVAAIVLGGGAGTRLFPLTSRR 109
Query: 116 ATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGF 174
A PAVP+ GCYRLID+PMSNCINSGI KIF+LTQFNS SLNRH+ARTY FG+G NFGDGF
Sbjct: 110 AKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLARTYNFGDGVNFGDGF 169
Query: 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFI 234
VEV AATQTPGESGK WFQGTADAVRQF W FED+K++++E++ IL GDHLYRMDYM F
Sbjct: 170 VEVFAATQTPGESGKKWFQGTADAVRQFFWAFEDSKSKDVEHIVILSGDHLYRMDYMSFW 229
Query: 235 QSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGF 294
Q H+D +ADIT+SC + +SRASDYGL+KID+ GRI FAEKP G++L AMQVDT++LG
Sbjct: 230 QKHIDTNADITVSCIPMDDSRASDYGLMKIDHTGRIVHFAEKPKGSDLTAMQVDTTVLGL 289
Query: 295 SPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDY 354
S EA PY+ASMGVYVF+ DVL +LL +YP+SNDFGSEIIP+A+ E +VQAY+F DY
Sbjct: 290 SDLEAMSNPYIASMGVYVFRTDVLMELLNRKYPSSNDFGSEIIPSAVGESNVQAYLFNDY 349
Query: 355 WEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCF 414
WEDIGTIKSF+++N+ALT++ P F FYDPKTPFYTS RFLPPTK+D C+I D+I+SHGCF
Sbjct: 350 WEDIGTIKSFFDSNLALTQQPPKFEFYDPKTPFYTSARFLPPTKVDRCKIVDSIVSHGCF 409
Query: 415 LRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 474
L+E +++HSIVG RSRL+ GVE +DT+M+GADYYQTESEIASLLAEGKVP+GVG+NTKI+
Sbjct: 410 LQESSIQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPVGVGQNTKIK 469
Query: 475 NCIIDKNVKIGKDVVIVNKD 494
NCIIDKN KIGKDVVI N D
Sbjct: 470 NCIIDKNAKIGKDVVIANTD 489
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Beta vulgaris (taxid: 161934) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55230|GLGL2_ARATH Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/413 (74%), Positives = 362/413 (87%), Gaps = 1/413 (0%)
Query: 83 PRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGIN 142
P L + DPKNVA+IILGGGAGT+LFPLT + A PAVP+ GCYRLIDIPMSNCINSGI
Sbjct: 73 PLLRTQNADPKNVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDIPMSNCINSGIR 132
Query: 143 KIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQ 201
KIF+LTQFNS SLNRH++RTY FGNG NFGDGFVEVLAATQT G++GK WFQGTADAVRQ
Sbjct: 133 KIFILTQFNSFSLNRHLSRTYNFGNGVNFGDGFVEVLAATQTSGDAGKKWFQGTADAVRQ 192
Query: 202 FTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGL 261
F WVFEDAK +N+E+V IL GDHLYRMDYM+F+Q H++ +ADIT+SC + ESRASD+GL
Sbjct: 193 FIWVFEDAKTKNVEHVLILSGDHLYRMDYMNFVQKHIESNADITVSCLPMDESRASDFGL 252
Query: 262 VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321
+KID G+I QF+EKP G +LKAMQVDTS+LG P+EA + PY+ASMGVYVF+K+VL KL
Sbjct: 253 LKIDQSGKIIQFSEKPKGDDLKAMQVDTSILGLPPKEAAESPYIASMGVYVFRKEVLLKL 312
Query: 322 LRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFY 381
LR YPTSNDFGSEIIP A+ EH+VQA++F DYWEDIGTI SF++AN+ALT++ P F FY
Sbjct: 313 LRSSYPTSNDFGSEIIPLAVGEHNVQAFLFNDYWEDIGTIGSFFDANLALTEQPPKFQFY 372
Query: 382 DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTV 441
D KTPF+TSPRFLPPTK+D CRI D+I+SHGCFLREC+V+HSIVG RSRL+ GVEL+DT+
Sbjct: 373 DQKTPFFTSPRFLPPTKVDKCRILDSIVSHGCFLRECSVQHSIVGIRSRLESGVELQDTM 432
Query: 442 MLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
M+GAD+YQTE+EIASLLAEGKVP+GVG+NTKI+NCIIDKN KIGK+VVI N D
Sbjct: 433 MMGADFYQTEAEIASLLAEGKVPVGVGQNTKIKNCIIDKNAKIGKNVVIANAD 485
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55242|GLGL2_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/496 (64%), Positives = 378/496 (76%), Gaps = 12/496 (2%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGS-VSNDGCTKQLKKSLKAEKRDEK 59
MD+ C ++ +V ++A WGE+I G + N G + KS ++R
Sbjct: 1 MDALCASMKGTAQLVAICNQ-----ESAFWGEKISGRRLINKGFGVRSCKSFTTQQRGRN 55
Query: 60 VKPGVAYAVMTSKHPNEVMTLAPPRLERR-RVDPKNVAAIILGGGAGTKLFPLTLRAATP 118
V P AV+T E++ E + DPK VA++ILGGG GT+LFPLT R A P
Sbjct: 56 VTP----AVLTRDINKEMLPFEESMFEEQPTADPKAVASVILGGGVGTRLFPLTSRRAKP 111
Query: 119 AVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVL 178
AVP+ GCYRLID+PMSNCINSGI KIF+LTQFNS SLNRH+A FGNG FGDGFVEVL
Sbjct: 112 AVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLATYNFGNGVGFGDGFVEVL 171
Query: 179 AATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV 238
A TQTPG+ K WFQ ADAVR+F WVFE+ KN+N+E++ IL GDHLYRM+YMDF+Q H+
Sbjct: 172 AGTQTPGDGRKMWFQA-ADAVREFIWVFENQKNKNVEHIIILSGDHLYRMNYMDFVQKHI 230
Query: 239 DRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQE 298
D +ADIT+SC + + RASD+GL+KID G I QFAEKP G LKAMQVDTS+LG S QE
Sbjct: 231 DTNADITVSCVPMDDGRASDFGLMKIDETGAIIQFAEKPKGPALKAMQVDTSILGLSEQE 290
Query: 299 ARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDI 358
A PY+ASMGVYVFK DVL LL+ YP+ NDFGSEIIP+A+ +H+VQAY+F DYWEDI
Sbjct: 291 ASNFPYIASMGVYVFKTDVLLNLLKSAYPSCNDFGSEIIPSAVKDHNVQAYLFNDYWEDI 350
Query: 359 GTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLREC 418
GT+KSF++AN+ALTK+ P F F DPKTPFYTS RFLPPTK+D RI DAIISHGCFLREC
Sbjct: 351 GTVKSFFDANLALTKQPPKFDFNDPKTPFYTSARFLPPTKVDKSRIVDAIISHGCFLREC 410
Query: 419 TVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCII 478
++HSIVG RSRLDYGVE KDT+M+GADYYQTE EIASLLAEGKVPIGVG NTKI+NCII
Sbjct: 411 NIQHSIVGVRSRLDYGVEFKDTMMMGADYYQTECEIASLLAEGKVPIGVGPNTKIQNCII 470
Query: 479 DKNVKIGKDVVIVNKD 494
DKN KIGKDVVI+NK+
Sbjct: 471 DKNAKIGKDVVILNKE 486
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55229|GLGL1_ARATH Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 611 bits (1576), Expect = e-174, Method: Compositional matrix adjust.
Identities = 279/410 (68%), Positives = 338/410 (82%)
Query: 85 LERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI 144
LE + DP+ VA+IILGGGAGT+LFPLT R A PAVP+ G YRLID+PMSNCINSGINK+
Sbjct: 80 LETEKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKV 139
Query: 145 FVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTW 204
++LTQ+NSASLNRH+AR Y NG FGDG+VEVLAATQTPGESGK WFQGTADAVRQF W
Sbjct: 140 YILTQYNSASLNRHLARAYNSNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHW 199
Query: 205 VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI 264
+FEDA++++IE+V IL GDHLYRMDYMDFIQ H ADI+ISC + + RASD+GL+KI
Sbjct: 200 LFEDARSKDIEDVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKI 259
Query: 265 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324
D+ GR+ F+EKP G +LKAM VDT++LG S +EA K PY+ASMGVYVFKK++L LLRW
Sbjct: 260 DDKGRVISFSEKPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRW 319
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
R+PT+NDFGSEIIP + E V AY+F DYWEDIGTI+SF+EAN+ALT+ AF FYD
Sbjct: 320 RFPTANDFGSEIIPFSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAA 379
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG 444
P YTS R LPP+KIDN ++ D+IISHG FL C +EHSIVG RSR+ V+LKDTVMLG
Sbjct: 380 KPIYTSRRNLPPSKIDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLG 439
Query: 445 ADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
ADYY+TE+E+A+LLAEG VPIG+G NTKI+ CIIDKN ++GK+V+I N +
Sbjct: 440 ADYYETEAEVAALLAEGNVPIGIGENTKIQECIIDKNARVGKNVIIANSE 489
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P12299|GLGL2_WHEAT Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2 | Back alignment and function description |
|---|
Score = 610 bits (1574), Expect = e-174, Method: Compositional matrix adjust.
Identities = 289/432 (66%), Positives = 346/432 (80%), Gaps = 4/432 (0%)
Query: 65 AYAVMTSK-HPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVA 123
A V+TS P + + L R DP VAA+ILGGG GT+LFPLT ATPAVP+
Sbjct: 60 AQCVLTSDASPADTLVLRT-SFRRNYADPNEVAAVILGGGTGTQLFPLTSTRATPAVPIG 118
Query: 124 GCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQT 183
GCYRLIDIPMSNC NSGINKIFV+TQFNSASLNRHI RTY G G NF DG VEVLAATQ
Sbjct: 119 GCYRLIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHRTYLGGGINFTDGSVEVLAATQM 178
Query: 184 PGESGKNWFQGTADAVRQFTWVFEDA-KNRNIENVAILCGDHLYRMDYMDFIQSHVDRDA 242
PGE+ WF+GTADAVR+F WV ED KN++IE++ IL GD LYRMDYM+ +Q HVD +A
Sbjct: 179 PGEAA-GWFRGTADAVRKFIWVLEDYYKNKSIEHILILSGDQLYRMDYMELVQKHVDDNA 237
Query: 243 DITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKC 302
DIT+SCA VGESRAS+YGLVK D+ GR+ QF+EKP G +L+AM+VDTS L F+ + K
Sbjct: 238 DITLSCAPVGESRASEYGLVKFDSSGRVVQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKY 297
Query: 303 PYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIK 362
PY+ASMGVYVFK+DVL LL+ RY +DFGSEI+P A+ +H+VQAY+F DYWEDIGTI+
Sbjct: 298 PYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIR 357
Query: 363 SFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEH 422
SF++ANMAL ++ P F FYDPKTPF+TSPR+LPPTK D CRIK+AIISHGCFLREC +EH
Sbjct: 358 SFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEH 417
Query: 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482
SI+G RSRL+ G ELK+ +M+GAD Y+TE EI+ L++EGKVPIGVG NTKI NCIID N
Sbjct: 418 SIIGVRSRLNSGSELKNAMMMGADSYETEDEISRLMSEGKVPIGVGENTKISNCIIDMNA 477
Query: 483 KIGKDVVIVNKD 494
+IG+DVVI NK+
Sbjct: 478 RIGRDVVISNKE 489
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P30524|GLGL1_HORVU Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=2 | Back alignment and function description |
|---|
Score = 608 bits (1567), Expect = e-173, Method: Compositional matrix adjust.
Identities = 288/432 (66%), Positives = 346/432 (80%), Gaps = 4/432 (0%)
Query: 65 AYAVMTSK-HPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVA 123
A V+TS P + + L R DP VAA+ILGGG GT+LFPLT ATPAVP+
Sbjct: 61 AQCVLTSDASPADTLVLRT-SFRRNYADPNEVAAVILGGGTGTQLFPLTSTRATPAVPIG 119
Query: 124 GCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQT 183
GCYRLIDIPMSNC NSGINKIFV+TQFNSASLNRHI RTY G G NF DG VEVLAATQ
Sbjct: 120 GCYRLIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHRTYLGGGINFTDGSVEVLAATQM 179
Query: 184 PGESGKNWFQGTADAVRQFTWVFEDA-KNRNIENVAILCGDHLYRMDYMDFIQSHVDRDA 242
PGE+ WF+GTADAVR+F WV ED K+++IE++ IL GD LYRMDYM+ +Q HVD +A
Sbjct: 180 PGEAA-GWFRGTADAVRKFIWVLEDYYKHKSIEHILILSGDQLYRMDYMELVQKHVDDNA 238
Query: 243 DITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKC 302
DIT+SCA VGESRAS+YGLVK D+ GR+ QF+EKP G +L+AM+VDTS L F+ + K
Sbjct: 239 DITLSCAPVGESRASEYGLVKFDSSGRVIQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKY 298
Query: 303 PYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIK 362
PY+ASMGVYVFK+DVL LL+ RY +DFGSEI+P A+ +H+VQAY+F DYWEDIGTI+
Sbjct: 299 PYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIR 358
Query: 363 SFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEH 422
SF++ANMAL ++ P F FYDPKTPF+TSPR+LPPTK D CRIK+AIISHGCFLREC +EH
Sbjct: 359 SFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEH 418
Query: 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482
SI+G RSRL+ G ELK+ +M+GAD Y+TE EI+ L++EGKVPIGVG NTKI NCIID N
Sbjct: 419 SIIGVRSRLNSGSELKNAMMMGADSYETEDEISRLMSEGKVPIGVGENTKISNCIIDMNA 478
Query: 483 KIGKDVVIVNKD 494
+IG+DVVI NK+
Sbjct: 479 RIGRDVVISNKE 490
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55243|GLGL3_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 592 bits (1527), Expect = e-168, Method: Compositional matrix adjust.
Identities = 286/453 (63%), Positives = 353/453 (77%), Gaps = 8/453 (1%)
Query: 45 KQLKKSLKAEKRDEKVKPGVAYAVMTSKHPNEVMTLAPPRLER-RRVDPKNVAAIILGGG 103
K+LK + K + R VKP + ++ T + LER ++ D + V AIILGGG
Sbjct: 3 KKLKYT-KFQLRSNVVKPNICMSLTTDIAGEAKLK----DLERQKKGDARTVVAIILGGG 57
Query: 104 AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY 163
AGT+LFPLT R A PAVP+ G YRLID+PMSNCINSGINK+++LTQFNSASLNRHIAR Y
Sbjct: 58 AGTRLFPLTKRRAKPAVPMGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHIARAY 117
Query: 164 -FGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCG 222
FGNG F G+VEVLAATQTPGE GK WFQGTA AVRQF W+FEDA++++IE+V IL G
Sbjct: 118 NFGNGVTFESGYVEVLAATQTPGELGKRWFQGTAHAVRQFHWLFEDARSKDIEDVLILSG 177
Query: 223 DHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANL 282
DHLYRMDY+ F+QSH ADITIS + +SRASD+GL+KID+ GR+ F+EKP G +L
Sbjct: 178 DHLYRMDYLHFVQSHRQSGADITISSLPIDDSRASDFGLMKIDDTGRVMSFSEKPKGDDL 237
Query: 283 KAMQVDTSLLGFSPQEARKCPYVASMG-VYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI 341
KAM VDT++LG SP+EA++ PY+AS+G VYVFKKD+L LLRWR+PT+NDFGSEIIPA+
Sbjct: 238 KAMAVDTTVLGLSPEEAKEKPYIASIGKVYVFKKDILLNLLRWRFPTANDFGSEIIPAST 297
Query: 342 MEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN 401
E V+AY+F DYWEDIGTI+SF+ AN+ALT+ P F FYD P YTS R LPP+ IDN
Sbjct: 298 KEFCVKAYLFNDYWEDIGTIRSFFRANLALTEHPPRFSFYDATKPIYTSRRNLPPSAIDN 357
Query: 402 CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG 461
+I D+I+SHG FL C VEHS+VG RSR+ V LKDTVMLGADYY+T++EI S LAEG
Sbjct: 358 SKIVDSIVSHGIFLTNCFVEHSVVGIRSRIGTNVHLKDTVMLGADYYETDAEIRSQLAEG 417
Query: 462 KVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
KVP+G+G NT+I++CIIDKN +IGK+VVI N +
Sbjct: 418 KVPLGIGENTRIKDCIIDKNARIGKNVVIANSE 450
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 498 | ||||||
| 194595409 | 527 | ADP-glucose pyrophosphorylase large subu | 0.991 | 0.937 | 0.993 | 0.0 | |
| 5917791 | 531 | ADP-glucose pyrophosphorylase large subu | 0.983 | 0.922 | 0.958 | 0.0 | |
| 255543725 | 531 | glucose-1-phosphate adenylyltransferase, | 0.991 | 0.930 | 0.797 | 0.0 | |
| 224103389 | 527 | predicted protein [Populus trichocarpa] | 0.991 | 0.937 | 0.789 | 0.0 | |
| 224080375 | 526 | predicted protein [Populus trichocarpa] | 0.989 | 0.937 | 0.799 | 0.0 | |
| 225428422 | 527 | PREDICTED: glucose-1-phosphate adenylylt | 0.991 | 0.937 | 0.771 | 0.0 | |
| 297744412 | 517 | unnamed protein product [Vitis vinifera] | 0.971 | 0.936 | 0.757 | 0.0 | |
| 356545193 | 528 | PREDICTED: glucose-1-phosphate adenylylt | 0.991 | 0.935 | 0.765 | 0.0 | |
| 83630945 | 524 | ADPglucose pyrophosphorylase large subun | 0.985 | 0.937 | 0.746 | 0.0 | |
| 1947084 | 524 | ADP-glucose pyrophosphorylase large subu | 0.985 | 0.937 | 0.742 | 0.0 |
| >gi|194595409|gb|ACF77017.1| ADP-glucose pyrophosphorylase large subunit [Citrus sinensis] | Back alignment and taxonomy information |
|---|
Score = 1028 bits (2657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/494 (99%), Positives = 493/494 (99%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV
Sbjct: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV
Sbjct: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA
Sbjct: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR
Sbjct: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR
Sbjct: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
KCPYVASMGVYVFKKDVL KLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT
Sbjct: 301 KCPYVASMGVYVFKKDVLLKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCR+KDAIISHGCFLRECTV
Sbjct: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRMKDAIISHGCFLRECTV 420
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
EHSIVGERSR+DYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK
Sbjct: 421 EHSIVGERSRIDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
Query: 481 NVKIGKDVVIVNKD 494
NVKIGKDVVIVNKD
Sbjct: 481 NVKIGKDVVIVNKD 494
|
Source: Citrus sinensis Species: Citrus sinensis Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5917791|gb|AAD56042.1|AF184598_1 ADP-glucose pyrophosphorylase large subunit [Citrus unshiu] | Back alignment and taxonomy information |
|---|
Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/502 (95%), Positives = 486/502 (96%), Gaps = 12/502 (2%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSV NDGCTKQLKKSLKAEKRDEKV
Sbjct: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVRNDGCTKQLKKSLKAEKRDEKV 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVAYA+MTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV
Sbjct: 61 KPGVAYAIMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV+GCYRLIDIP INSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA
Sbjct: 121 PVSGCYRLIDIP----INSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 176
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--------YRMDYMD 232
TQTPGESGKNWFQGTADAV +FTWVFEDAKNRNIENVAILCGDHL YRMDYMD
Sbjct: 177 TQTPGESGKNWFQGTADAVTRFTWVFEDAKNRNIENVAILCGDHLSILCGDHLYRMDYMD 236
Query: 233 FIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLL 292
FIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLL
Sbjct: 237 FIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLL 296
Query: 293 GFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFR 352
GFSPQEARK PYVASMGVYVFKKDVL KLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFR
Sbjct: 297 GFSPQEARKSPYVASMGVYVFKKDVLLKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFR 356
Query: 353 DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHG 412
DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCR+KDAIISHG
Sbjct: 357 DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRMKDAIISHG 416
Query: 413 CFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK 472
CFLRECTVEHSIVGERSR+DYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK
Sbjct: 417 CFLRECTVEHSIVGERSRIDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK 476
Query: 473 IRNCIIDKNVKIGKDVVIVNKD 494
IRNCIIDKNVKIGKDVVIVNKD
Sbjct: 477 IRNCIIDKNVKIGKDVVIVNKD 498
|
Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543725|ref|XP_002512925.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] gi|223547936|gb|EEF49428.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/498 (79%), Positives = 438/498 (87%), Gaps = 4/498 (0%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSC + L NT++VKASK G GD GE IRGS N Q+K+ LKA+ KV
Sbjct: 1 MDSCLMALNTNTNLVKASKGGINTGDKEFLGEMIRGSSKNSVWFNQMKRRLKADWNVNKV 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPP----RLERRRVDPKNVAAIILGGGAGTKLFPLTLRAA 116
KPGVAYAV+TS +P E++TL+PP R ERR+VDPKNVA+IILGGGAGT+LFPLT RAA
Sbjct: 61 KPGVAYAVLTSNNPKEIVTLSPPPPPPRFERRKVDPKNVASIILGGGAGTQLFPLTRRAA 120
Query: 117 TPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176
TPAVPV GCY+LIDIPMSNCINSGINKIFVLTQFNSASLNRH+ARTYFGNG NFGDGFVE
Sbjct: 121 TPAVPVGGCYKLIDIPMSNCINSGINKIFVLTQFNSASLNRHLARTYFGNGINFGDGFVE 180
Query: 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 236
VLAATQTPGE+G NWFQGTADAVRQFTWVFEDAKNRN+EN+ IL GDHLYRMDYMDF+Q
Sbjct: 181 VLAATQTPGEAGMNWFQGTADAVRQFTWVFEDAKNRNVENILILSGDHLYRMDYMDFVQH 240
Query: 237 HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 296
HVD +ADITISCAAVGESRASDYGLVKID+ GRI FAEKP GA LK+++ DT+ LG SP
Sbjct: 241 HVDSNADITISCAAVGESRASDYGLVKIDSRGRIVHFAEKPGGAELKSLKADTTQLGLSP 300
Query: 297 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 356
Q+A K PY+ASMGVYVF+ ++L KLLRWR+PTSNDFGSEIIPAA+MEH++Q+Y FRDYWE
Sbjct: 301 QDALKSPYIASMGVYVFRTEILLKLLRWRFPTSNDFGSEIIPAAVMEHNIQSYNFRDYWE 360
Query: 357 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 416
DIGTIKSFYEAN+ALT+E P F FYDPKTPFYTSPRFLPPTKID CRI DAIISHGCFLR
Sbjct: 361 DIGTIKSFYEANLALTEEPPTFEFYDPKTPFYTSPRFLPPTKIDKCRIVDAIISHGCFLR 420
Query: 417 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 476
ECTV HS+VGERSRLDYGVELKDTVMLGADYYQTE+EIASLLAEGKVPIGVGRNTKI+NC
Sbjct: 421 ECTVRHSVVGERSRLDYGVELKDTVMLGADYYQTETEIASLLAEGKVPIGVGRNTKIKNC 480
Query: 477 IIDKNVKIGKDVVIVNKD 494
IIDKN KIGKDVVIVNKD
Sbjct: 481 IIDKNAKIGKDVVIVNKD 498
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103389|ref|XP_002313036.1| predicted protein [Populus trichocarpa] gi|222849444|gb|EEE86991.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 835 bits (2157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/494 (78%), Positives = 430/494 (87%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCC L+ANTHV KASK G GD WGERIRGS +N QL KSLK +K K
Sbjct: 1 MDSCCATLKANTHVAKASKGGFNNGDKEFWGERIRGSFNNSVWVNQLAKSLKVDKSVNKF 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVA++V+TS + E +TL PPR ERR+ DPKNVA+IILGGGAGT+LFPLT RAATPAV
Sbjct: 61 KPGVAFSVLTSSNGRETVTLQPPRFERRKADPKNVASIILGGGAGTQLFPLTRRAATPAV 120
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
P+ GCYRLIDIPMSNCINSGINKIFVLTQFNS SLNRH+ARTYFGNG FGDGFVEVLAA
Sbjct: 121 PLGGCYRLIDIPMSNCINSGINKIFVLTQFNSTSLNRHLARTYFGNGIIFGDGFVEVLAA 180
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+G WFQGTADAVRQFTWVFEDAKNRNIEN+ +L GDHLYRMDYMDF+Q H+D
Sbjct: 181 TQTPGEAGMKWFQGTADAVRQFTWVFEDAKNRNIENILVLSGDHLYRMDYMDFVQHHIDS 240
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
+AD TISCAAVGESRASDYGLVKID G++ QFAEKP G+ L+ M+VDT+ LG SPQ+A
Sbjct: 241 NADFTISCAAVGESRASDYGLVKIDGRGQVFQFAEKPKGSELREMRVDTTRLGLSPQDAM 300
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K PY+ASMGVYVFK D+L KLLRWRYPT+NDFGSEIIPAA+MEH+VQAYIF+DYWEDIGT
Sbjct: 301 KSPYIASMGVYVFKTDILLKLLRWRYPTANDFGSEIIPAAVMEHNVQAYIFKDYWEDIGT 360
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IKSFYEAN+AL +E P F FYDPKTPFYTSPRF PPTK D CRI +AIISHGCFLRECTV
Sbjct: 361 IKSFYEANLALAEEPPKFEFYDPKTPFYTSPRFSPPTKFDKCRIVNAIISHGCFLRECTV 420
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
+HS+VGERSRLDYGVELKDTVMLGAD YQTE EIASLLAEG+VPIGVGRNTKIRNCIIDK
Sbjct: 421 QHSVVGERSRLDYGVELKDTVMLGADCYQTEVEIASLLAEGEVPIGVGRNTKIRNCIIDK 480
Query: 481 NVKIGKDVVIVNKD 494
N KIGKDV+I+NKD
Sbjct: 481 NAKIGKDVIIMNKD 494
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080375|ref|XP_002306116.1| predicted protein [Populus trichocarpa] gi|222849080|gb|EEE86627.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/494 (79%), Positives = 428/494 (86%), Gaps = 1/494 (0%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSC V LRANT V KASK G GD WGERIRGS +N Q KSLK +K K
Sbjct: 1 MDSCYVALRANTPVAKASKGGFINGDTEFWGERIRGSFNNI-WVNQFAKSLKVDKSVNKF 59
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
PGVA+AV+TS + E +TL PPR RRR DPKNVA+IILGGGAGT+LFPLT RAATPAV
Sbjct: 60 TPGVAFAVLTSNNGKETVTLQPPRFGRRRADPKNVASIILGGGAGTQLFPLTRRAATPAV 119
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV GCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRH+A TYFGNG NFGDGFVEVLAA
Sbjct: 120 PVGGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHLAHTYFGNGINFGDGFVEVLAA 179
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+G WFQGTADAVRQFTWVFEDAKNR+IEN+ IL GDHLYRMDYMDF+Q HVD
Sbjct: 180 TQTPGEAGMKWFQGTADAVRQFTWVFEDAKNRSIENILILSGDHLYRMDYMDFVQHHVDS 239
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
+ADITISC AVGESRASDYGLVKID+ G+I QF EKP G+ L+ MQVDT+ LG SPQ+A
Sbjct: 240 NADITISCVAVGESRASDYGLVKIDSKGQIFQFTEKPKGSELREMQVDTTHLGLSPQDAL 299
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K Y+ASMGVYVFK D+L KLLRWR+PTSNDFGSEIIPAA+MEH+VQAYIF+DYWEDIGT
Sbjct: 300 KSSYIASMGVYVFKTDILLKLLRWRFPTSNDFGSEIIPAAVMEHNVQAYIFKDYWEDIGT 359
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IKSFYEAN+AL +E P F FYDPKTPFYTSP FLPPTKID CRI DAIISHGCFLRECTV
Sbjct: 360 IKSFYEANLALAEEPPKFEFYDPKTPFYTSPGFLPPTKIDKCRIVDAIISHGCFLRECTV 419
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
+HS+VGERSRLDYGVELKDTVMLGAD+YQTE+EIASLLAEGKVPIGVGRNTKIRNCIIDK
Sbjct: 420 QHSVVGERSRLDYGVELKDTVMLGADHYQTEAEIASLLAEGKVPIGVGRNTKIRNCIIDK 479
Query: 481 NVKIGKDVVIVNKD 494
N KIGKDV+I NKD
Sbjct: 480 NAKIGKDVIITNKD 493
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428422|ref|XP_002283855.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/494 (77%), Positives = 430/494 (87%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCCV +A H+ KAS+ G GDN WGERIRGS++N G QL K LK EKR K+
Sbjct: 1 MDSCCVTFKAKAHLAKASRGGLSNGDNEFWGERIRGSLNNSGWVSQLAKGLKTEKRPRKI 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVA +V+TS + E +T+ P ERRR DPKNVA+IILGGGAGT+LFPLT+R ATPAV
Sbjct: 61 KPGVACSVITSNNGKETVTIQAPIFERRRADPKNVASIILGGGAGTQLFPLTIRQATPAV 120
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV GCYRLIDIPMSNCINS INKIF+LTQFNSASLNRHIARTYFGNG NFGDGFVEVLAA
Sbjct: 121 PVGGCYRLIDIPMSNCINSNINKIFILTQFNSASLNRHIARTYFGNGVNFGDGFVEVLAA 180
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+G WF+GTADAVR+F WVFEDAKN+NIEN+ IL GDHLYRMDYMD +Q+H+DR
Sbjct: 181 TQTPGEAGMKWFEGTADAVRKFIWVFEDAKNKNIENILILSGDHLYRMDYMDLVQNHIDR 240
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
ADIT+SC VGESRASDYGL+K+DN GRI QFAEKP GA+LKAM+VDT+ LG SPQEA
Sbjct: 241 KADITVSCVPVGESRASDYGLLKMDNRGRIIQFAEKPKGADLKAMKVDTTRLGLSPQEAM 300
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K PY+ASMGVYVFK D+L LLRWRYPTSNDFGSEIIP A+MEH+V+A++FRDYWEDIGT
Sbjct: 301 KSPYIASMGVYVFKTDILLNLLRWRYPTSNDFGSEIIPLAVMEHNVEAFLFRDYWEDIGT 360
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IK+FYEANM LT+E P F FY+PKTP +TSPRFLPPTKI+ C++ DAIISHGCFLREC+V
Sbjct: 361 IKTFYEANMGLTEEFPKFEFYNPKTPIFTSPRFLPPTKIEQCQVVDAIISHGCFLRECSV 420
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
+HSIVGERSRLDYGVELKDT+M+GAD+YQTESEIASLLAEG VPIG+GRNTKIRNCIIDK
Sbjct: 421 KHSIVGERSRLDYGVELKDTLMMGADFYQTESEIASLLAEGNVPIGIGRNTKIRNCIIDK 480
Query: 481 NVKIGKDVVIVNKD 494
N KIGKD VIVNKD
Sbjct: 481 NAKIGKDAVIVNKD 494
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744412|emb|CBI37674.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/494 (75%), Positives = 424/494 (85%), Gaps = 10/494 (2%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCCV +A H+ KAS+ G GDN WGERIRGS++N G Q +K +
Sbjct: 1 MDSCCVTFKAKAHLAKASRGGLSNGDNEFWGERIRGSLNNSGWVSQPRK----------I 50
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVA +V+TS + E +T+ P ERRR DPKNVA+IILGGGAGT+LFPLT+R ATPAV
Sbjct: 51 KPGVACSVITSNNGKETVTIQAPIFERRRADPKNVASIILGGGAGTQLFPLTIRQATPAV 110
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV GCYRLIDIPMSNCINS INKIF+LTQFNSASLNRHIARTYFGNG NFGDGFVEVLAA
Sbjct: 111 PVGGCYRLIDIPMSNCINSNINKIFILTQFNSASLNRHIARTYFGNGVNFGDGFVEVLAA 170
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+G WF+GTADAVR+F WVFEDAKN+NIEN+ IL GDHLYRMDYMD +Q+H+DR
Sbjct: 171 TQTPGEAGMKWFEGTADAVRKFIWVFEDAKNKNIENILILSGDHLYRMDYMDLVQNHIDR 230
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
ADIT+SC VGESRASDYGL+K+DN GRI QFAEKP GA+LKAM+VDT+ LG SPQEA
Sbjct: 231 KADITVSCVPVGESRASDYGLLKMDNRGRIIQFAEKPKGADLKAMKVDTTRLGLSPQEAM 290
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K PY+ASMGVYVFK D+L LLRWRYPTSNDFGSEIIP A+MEH+V+A++FRDYWEDIGT
Sbjct: 291 KSPYIASMGVYVFKTDILLNLLRWRYPTSNDFGSEIIPLAVMEHNVEAFLFRDYWEDIGT 350
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IK+FYEANM LT+E P F FY+PKTP +TSPRFLPPTKI+ C++ DAIISHGCFLREC+V
Sbjct: 351 IKTFYEANMGLTEEFPKFEFYNPKTPIFTSPRFLPPTKIEQCQVVDAIISHGCFLRECSV 410
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
+HSIVGERSRLDYGVELKDT+M+GAD+YQTESEIASLLAEG VPIG+GRNTKIRNCIIDK
Sbjct: 411 KHSIVGERSRLDYGVELKDTLMMGADFYQTESEIASLLAEGNVPIGIGRNTKIRNCIIDK 470
Query: 481 NVKIGKDVVIVNKD 494
N KIGKD VIVNKD
Sbjct: 471 NAKIGKDAVIVNKD 484
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356545193|ref|XP_003541029.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/495 (76%), Positives = 425/495 (85%), Gaps = 1/495 (0%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVS-NDGCTKQLKKSLKAEKRDEK 59
M S CV L+ANTH+VK+ K + D+ GERI+G ++ + QL SL+ ++R +K
Sbjct: 1 MVSACVTLKANTHLVKSRKDNTFRQDSGFLGERIKGGLNYSPWIINQLASSLRTQERVKK 60
Query: 60 VKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPA 119
KPGV AV+TS + E + P RR+ DPKNV +IILGGG G +LFPLT RAATPA
Sbjct: 61 AKPGVVSAVLTSSNTKESVAFQMPSFLRRKADPKNVVSIILGGGPGIQLFPLTKRAATPA 120
Query: 120 VPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLA 179
VPV GCYRLIDIPMSNCINSG+NKIFVLTQFNSASLNRHI+RTYFGNG NFGDG VEVLA
Sbjct: 121 VPVGGCYRLIDIPMSNCINSGLNKIFVLTQFNSASLNRHISRTYFGNGINFGDGCVEVLA 180
Query: 180 ATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD 239
ATQT GE+GKNWFQGTADAVRQFTWVFEDAK+ NIENV IL GDHLYRMDYMD +QSHVD
Sbjct: 181 ATQTQGETGKNWFQGTADAVRQFTWVFEDAKHTNIENVLILAGDHLYRMDYMDLVQSHVD 240
Query: 240 RDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299
R+ADIT+SCAAVGESRASDYGLVK D GRI QF+EKP GA+LKAMQVDTS+LG P EA
Sbjct: 241 RNADITVSCAAVGESRASDYGLVKADGRGRIIQFSEKPKGADLKAMQVDTSVLGLPPHEA 300
Query: 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIG 359
++ PY+ASMGVYVFK DVL KLL+WRYPTSNDFGSEIIPAA+ E++VQAY F DYWEDIG
Sbjct: 301 KRSPYIASMGVYVFKTDVLLKLLKWRYPTSNDFGSEIIPAAVRENNVQAYFFNDYWEDIG 360
Query: 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECT 419
TIKSFY+AN+ALT+E+P F FYDPKTP YTSPRFLPPTKID CRI DAIISHGCFLRECT
Sbjct: 361 TIKSFYDANLALTEENPMFKFYDPKTPIYTSPRFLPPTKIDKCRIVDAIISHGCFLRECT 420
Query: 420 VEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479
V+HSIVGERSRLDYGVEL+DTVM+GADYYQTESEIASLLAEGKVPIG+GRNTKIRNCIID
Sbjct: 421 VQHSIVGERSRLDYGVELQDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNCIID 480
Query: 480 KNVKIGKDVVIVNKD 494
KN KIGKDV+I+NKD
Sbjct: 481 KNAKIGKDVIIMNKD 495
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|83630945|gb|ABC26921.1| ADPglucose pyrophosphorylase large subunit [Solanum lycopersicum] gi|83630947|gb|ABC26922.1| ADPglucose pyrophosphorylase large subunit [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/494 (74%), Positives = 430/494 (87%), Gaps = 3/494 (0%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MD+CC +++ H+ + S G G+ ++GE+IRGS++N+ QL KSLK EK K+
Sbjct: 1 MDTCCAAMKSTVHLGRVSTGGFNNGEKEIFGEKIRGSLNNNLRINQLSKSLKLEK---KI 57
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVAY+V+T+++ E + + PRLERRR +PK+VAA+ILGGG GTKLFPLT R ATPAV
Sbjct: 58 KPGVAYSVITTENDTETVFVDMPRLERRRANPKDVAAVILGGGEGTKLFPLTSRTATPAV 117
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV GCYRLIDIPMSNCINS INKIFVLTQ+NSA+LNRHIARTYFGNG +FGDGFVEVLAA
Sbjct: 118 PVGGCYRLIDIPMSNCINSAINKIFVLTQYNSAALNRHIARTYFGNGVSFGDGFVEVLAA 177
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+GK WFQGTADAVR+F WVFEDAKN+NIEN+ +L GDHLYRMDYM+ +Q+H+DR
Sbjct: 178 TQTPGEAGKKWFQGTADAVRKFIWVFEDAKNKNIENILVLSGDHLYRMDYMELVQNHIDR 237
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
+ADIT+SCA +SRASD+GLVKID+ GR+ QFAEKP G LKAMQVDT+L+G SPQ+A+
Sbjct: 238 NADITLSCAPAEDSRASDFGLVKIDSRGRVVQFAEKPKGFELKAMQVDTTLVGLSPQDAK 297
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K PY+ASMGVYVFK DVL KLL+W YPTSNDFGSEIIPAAI +++VQAYIF+DYWEDIGT
Sbjct: 298 KSPYIASMGVYVFKTDVLLKLLKWSYPTSNDFGSEIIPAAIDDYNVQAYIFKDYWEDIGT 357
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IKSFY A++ALT+E P F FYDPKTPFYTSPRFLPPTKIDNC+IKDAIISHGCFLR+CTV
Sbjct: 358 IKSFYNASLALTQEFPEFQFYDPKTPFYTSPRFLPPTKIDNCKIKDAIISHGCFLRDCTV 417
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
EHSIVGERSRLD GVELKDT M+GADYYQTESEIASLLAEGKVPIG+G NTKIR CIIDK
Sbjct: 418 EHSIVGERSRLDCGVELKDTFMMGADYYQTESEIASLLAEGKVPIGIGENTKIRKCIIDK 477
Query: 481 NVKIGKDVVIVNKD 494
N KIGK+V I+NKD
Sbjct: 478 NAKIGKNVSIINKD 491
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1947084|gb|AAC49941.1| ADP-glucose pyrophosphorylase large subunit 1 [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/494 (74%), Positives = 428/494 (86%), Gaps = 3/494 (0%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MD+CC +++ H+ + S G G+ ++GE+IRGS++N+ QL KSLK EK K+
Sbjct: 1 MDTCCAAMKSTVHLGRVSTGGFNNGEKEIFGEKIRGSLNNNLRINQLSKSLKLEK---KI 57
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
K G AY+V+T ++ E + + PRLERRR +PK+VAA+ILGGG GTKLFPLT R ATPAV
Sbjct: 58 KFGEAYSVITIENDTETVFVDMPRLERRRANPKDVAAVILGGGEGTKLFPLTSRTATPAV 117
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV GCYRLIDIPMSNCINS INKIFVLTQ+NSA+LNRHIARTYFGNG +FGDGFVEVLAA
Sbjct: 118 PVGGCYRLIDIPMSNCINSAINKIFVLTQYNSAALNRHIARTYFGNGVSFGDGFVEVLAA 177
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+GK WFQGTADAVR+F WVFEDAKN+NIEN+ +L GDHLYRMDYM+ +Q+H+DR
Sbjct: 178 TQTPGEAGKKWFQGTADAVRKFIWVFEDAKNKNIENILVLSGDHLYRMDYMELVQNHIDR 237
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
+ADIT+SCA +SRASD+GLVKID+ GR+ QFAEKP G +LKAMQVDT+L+G SPQ+A+
Sbjct: 238 NADITLSCAPAEDSRASDFGLVKIDSRGRVVQFAEKPKGFDLKAMQVDTTLVGLSPQDAK 297
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K PY+ASMGVYVFK DVL KLL+W YPTSNDFGSEIIPAAI +++VQAYIF+DYWEDIGT
Sbjct: 298 KSPYIASMGVYVFKTDVLLKLLKWSYPTSNDFGSEIIPAAIDDYNVQAYIFKDYWEDIGT 357
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IKSFY A++ALT+E P F FYDPKTPFYTSPRFLPPTKIDNC+IKDAIISHGCFLR+CTV
Sbjct: 358 IKSFYNASLALTQEFPEFQFYDPKTPFYTSPRFLPPTKIDNCKIKDAIISHGCFLRDCTV 417
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
EHSIVGERSRLD GVELKDT M+GADYYQTESEIASLLAEGKVPIG+G NTKIR CIIDK
Sbjct: 418 EHSIVGERSRLDCGVELKDTFMMGADYYQTESEIASLLAEGKVPIGIGENTKIRKCIIDK 477
Query: 481 NVKIGKDVVIVNKD 494
N KIGK+V I+NKD
Sbjct: 478 NAKIGKNVSIINKD 491
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 498 | ||||||
| TAIR|locus:2136358 | 521 | APL3 [Arabidopsis thaliana (ta | 0.979 | 0.936 | 0.713 | 2.5e-191 | |
| TAIR|locus:2049364 | 523 | APL4 [Arabidopsis thaliana (ta | 0.935 | 0.891 | 0.726 | 1.4e-188 | |
| TAIR|locus:2199241 | 518 | APL2 "ADPGLC-PPase large subun | 0.967 | 0.930 | 0.645 | 3.3e-173 | |
| TAIR|locus:2182132 | 522 | APL1 "ADP glucose pyrophosphor | 0.823 | 0.785 | 0.680 | 1.8e-156 | |
| TAIR|locus:2156263 | 520 | ADG1 "ADP glucose pyrophosphor | 0.803 | 0.769 | 0.540 | 3.7e-119 | |
| UNIPROTKB|P15280 | 514 | AGPS "Glucose-1-phosphate aden | 0.795 | 0.770 | 0.539 | 3e-117 | |
| TAIR|locus:2032003 | 476 | APS2 "AT1G05610" [Arabidopsis | 0.769 | 0.804 | 0.414 | 4.5e-75 | |
| TIGR_CMR|SO_1498 | 420 | SO_1498 "glucose-1-phosphate a | 0.652 | 0.773 | 0.389 | 2.4e-53 | |
| TIGR_CMR|BA_5122 | 376 | BA_5122 "glucose-1-phosphate a | 0.367 | 0.486 | 0.369 | 1.2e-46 | |
| UNIPROTKB|Q9KLP4 | 407 | glgC2 "Glucose-1-phosphate ade | 0.666 | 0.815 | 0.320 | 4e-42 |
| TAIR|locus:2136358 APL3 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1854 (657.7 bits), Expect = 2.5e-191, P = 2.5e-191
Identities = 354/496 (71%), Positives = 404/496 (81%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEK-RDEK 59
MDSCC T V A K K +N GE+I+GSV K L ++K R+ K
Sbjct: 1 MDSCC-NFSLGTKTVLA-KDSFKNVENKFLGEKIKGSV-----LKPFSSDLSSKKFRNRK 53
Query: 60 VKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPA 119
++PGVAYA+ TSK+ E + P ERRR DPKNVAAIILGGG G KLFPLT RAATPA
Sbjct: 54 LRPGVAYAIATSKNAKEALKNQPSMFERRRADPKNVAAIILGGGDGAKLFPLTKRAATPA 113
Query: 120 VPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLA 179
VPV GCYR+IDIPMSNCINS INKIFVLTQFNSASLNRH+ARTYFGNG NFGDGFVEVLA
Sbjct: 114 VPVGGCYRMIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTYFGNGINFGDGFVEVLA 173
Query: 180 ATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD 239
ATQTPGE+GK WFQGTADAVR+F WVFEDAKNRNIEN+ IL GDHLYRM+YMDF+Q HVD
Sbjct: 174 ATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENIIILSGDHLYRMNYMDFVQHHVD 233
Query: 240 RDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299
ADIT+SCA V ESRAS+YGLV ID GR+ F+EKP+G +LK+MQ DT++ G S QEA
Sbjct: 234 SKADITLSCAPVDESRASEYGLVNIDRSGRVVHFSEKPTGIDLKSMQTDTTMHGLSHQEA 293
Query: 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIG 359
K PY+ASMGVY FK + L KLL WRYP+SNDFGSEIIPAAI +H+VQ YI+RDYWEDIG
Sbjct: 294 AKSPYIASMGVYCFKTEALLKLLTWRYPSSNDFGSEIIPAAIKDHNVQGYIYRDYWEDIG 353
Query: 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECT 419
TIKSFYEAN+AL +E P F FYD TPFYTSPRFLPPTK + CRI +++ISHGCFL EC+
Sbjct: 354 TIKSFYEANIALVEEHPKFEFYDQNTPFYTSPRFLPPTKTEKCRIVNSVISHGCFLGECS 413
Query: 420 VEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479
++ SI+GERSRLDYGVEL+DT+MLGAD YQTESEIASLLAEG VPIG+GR+TKIR CIID
Sbjct: 414 IQRSIIGERSRLDYGVELQDTLMLGADSYQTESEIASLLAEGNVPIGIGRDTKIRKCIID 473
Query: 480 KNVKIGKDVVIVNKDE 495
KN KIGK+VVI+NKD+
Sbjct: 474 KNAKIGKNVVIMNKDD 489
|
|
| TAIR|locus:2049364 APL4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1828 (648.5 bits), Expect = 1.4e-188, P = 1.4e-188
Identities = 342/471 (72%), Positives = 400/471 (84%)
Query: 26 DNALWGERIRGSVSNDGCTKQLKKSLKAEK-RDEKVKPGVAYAVMTSKHPNEVMTLAPPR 84
+N +GE+ +N+G K+ L ++K R++K K GV YAV TS +P + MT+
Sbjct: 25 ENRFYGEKN----NNNGLCKRFGSDLGSKKFRNQKFKHGVVYAVATSDNPKKAMTVKTSM 80
Query: 85 LERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI 144
ERR+VDP+NVAAIILGGG G KLFPLT+RAATPAVPV GCYRLIDIPMSNCINS INKI
Sbjct: 81 FERRKVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKI 140
Query: 145 FVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTW 204
FVLTQFNSASLNRH+ARTYFGNG NFG GFVEVLAATQTPGE+GK WFQGTADAVR+F W
Sbjct: 141 FVLTQFNSASLNRHLARTYFGNGINFGGGFVEVLAATQTPGEAGKKWFQGTADAVRKFLW 200
Query: 205 VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI 264
VFEDAKNRNIEN+ IL GDHLYRM+YMDF+QSHVD +ADIT+SCA V ESRAS++GLVKI
Sbjct: 201 VFEDAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSESRASNFGLVKI 260
Query: 265 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324
D GR+ F+EKP+G +LK+MQ DT++LG S QEA PY+ASMGVY FK + L LL
Sbjct: 261 DRGGRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYIASMGVYCFKTEALLNLLTR 320
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
+YP+SNDFGSE+IPAAI +HDVQ YIFRDYWEDIGTIK+FYEAN+AL +E P F FYDP+
Sbjct: 321 QYPSSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKTFYEANLALVEERPKFEFYDPE 380
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG 444
TPFYTSPRFLPPTK + CR+ D+IISHGCFLREC+V+ SI+GERSRLDYGVEL+DT+MLG
Sbjct: 381 TPFYTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSIIGERSRLDYGVELQDTLMLG 440
Query: 445 ADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495
ADYYQTESEIASLLAEGKVPIG+G++TKIR CIIDKN KIGK+V+I+NK +
Sbjct: 441 ADYYQTESEIASLLAEGKVPIGIGKDTKIRKCIIDKNAKIGKNVIIMNKGD 491
|
|
| TAIR|locus:2199241 APL2 "ADPGLC-PPase large subunit" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1683 (597.5 bits), Expect = 3.3e-173, P = 3.3e-173
Identities = 321/497 (64%), Positives = 396/497 (79%)
Query: 1 MDSCCVGLRAN--THVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDE 58
M+SC ++ N T + ++ +A WG ++ N T +L+ + + +
Sbjct: 1 MESCFPAMKLNQCTFGLNNEIVSERV--SAFWGTQV--VKPNHLRTTKLRSAPQ-----K 51
Query: 59 KVKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATP 118
K++ + +V+T P P L + DPKNVA+IILGGGAGT+LFPLT + A P
Sbjct: 52 KIQTNLIRSVLT---PFVDQESHEPLLRTQNADPKNVASIILGGGAGTRLFPLTSKRAKP 108
Query: 119 AVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEV 177
AVP+ GCYRLIDIPMSNCINSGI KIF+LTQFNS SLNRH++RTY FGNG NFGDGFVEV
Sbjct: 109 AVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRTYNFGNGVNFGDGFVEV 168
Query: 178 LAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSH 237
LAATQT G++GK WFQGTADAVRQF WVFEDAK +N+E+V IL GDHLYRMDYM+F+Q H
Sbjct: 169 LAATQTSGDAGKKWFQGTADAVRQFIWVFEDAKTKNVEHVLILSGDHLYRMDYMNFVQKH 228
Query: 238 VDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQ 297
++ +ADIT+SC + ESRASD+GL+KID G+I QF+EKP G +LKAMQVDTS+LG P+
Sbjct: 229 IESNADITVSCLPMDESRASDFGLLKIDQSGKIIQFSEKPKGDDLKAMQVDTSILGLPPK 288
Query: 298 EARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWED 357
EA + PY+ASMGVYVF+K+VL KLLR YPTSNDFGSEIIP A+ EH+VQA++F DYWED
Sbjct: 289 EAAESPYIASMGVYVFRKEVLLKLLRSSYPTSNDFGSEIIPLAVGEHNVQAFLFNDYWED 348
Query: 358 IGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE 417
IGTI SF++AN+ALT++ P F FYD KTPF+TSPRFLPPTK+D CRI D+I+SHGCFLRE
Sbjct: 349 IGTIGSFFDANLALTEQPPKFQFYDQKTPFFTSPRFLPPTKVDKCRILDSIVSHGCFLRE 408
Query: 418 CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCI 477
C+V+HSIVG RSRL+ GVEL+DT+M+GAD+YQTE+EIASLLAEGKVP+GVG+NTKI+NCI
Sbjct: 409 CSVQHSIVGIRSRLESGVELQDTMMMGADFYQTEAEIASLLAEGKVPVGVGQNTKIKNCI 468
Query: 478 IDKNVKIGKDVVIVNKD 494
IDKN KIGK+VVI N D
Sbjct: 469 IDKNAKIGKNVVIANAD 485
|
|
| TAIR|locus:2182132 APL1 "ADP glucose pyrophosphorylase large subunit 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1525 (541.9 bits), Expect = 1.8e-156, P = 1.8e-156
Identities = 279/410 (68%), Positives = 338/410 (82%)
Query: 85 LERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI 144
LE + DP+ VA+IILGGGAGT+LFPLT R A PAVP+ G YRLID+PMSNCINSGINK+
Sbjct: 80 LETEKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKV 139
Query: 145 FVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTW 204
++LTQ+NSASLNRH+AR Y NG FGDG+VEVLAATQTPGESGK WFQGTADAVRQF W
Sbjct: 140 YILTQYNSASLNRHLARAYNSNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHW 199
Query: 205 VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI 264
+FEDA++++IE+V IL GDHLYRMDYMDFIQ H ADI+ISC + + RASD+GL+KI
Sbjct: 200 LFEDARSKDIEDVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKI 259
Query: 265 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324
D+ GR+ F+EKP G +LKAM VDT++LG S +EA K PY+ASMGVYVFKK++L LLRW
Sbjct: 260 DDKGRVISFSEKPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRW 319
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
R+PT+NDFGSEIIP + E V AY+F DYWEDIGTI+SF+EAN+ALT+ AF FYD
Sbjct: 320 RFPTANDFGSEIIPFSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAA 379
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG 444
P YTS R LPP+KIDN ++ D+IISHG FL C +EHSIVG RSR+ V+LKDTVMLG
Sbjct: 380 KPIYTSRRNLPPSKIDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLG 439
Query: 445 ADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
ADYY+TE+E+A+LLAEG VPIG+G NTKI+ CIIDKN ++GK+V+I N +
Sbjct: 440 ADYYETEAEVAALLAEGNVPIGIGENTKIQECIIDKNARVGKNVIIANSE 489
|
|
| TAIR|locus:2156263 ADG1 "ADP glucose pyrophosphorylase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1173 (418.0 bits), Expect = 3.7e-119, P = 3.7e-119
Identities = 222/411 (54%), Positives = 301/411 (73%)
Query: 90 VDP---KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFV 146
+DP +V IILGGGAGT+L+PLT + A PAVP+ YRLIDIP+SNC+NS I+KI+V
Sbjct: 82 LDPDASSSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYV 141
Query: 147 LTQFNSASLNRHIARTYFGN-GTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWV 205
LTQFNSASLNRH++R Y N G +GFVEVLAA Q+P NWFQGTADAVRQ+ W+
Sbjct: 142 LTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWL 199
Query: 206 FEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID 265
FE+ N+ IL GDHLYRMDY FIQ+H + DADIT++ + E RA+ +GL+KID
Sbjct: 200 FEE---HNVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEQRATAFGLMKID 256
Query: 266 NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325
GRI +FAEKP G +LKAM+VDT++LG Q A++ P++ASMG+YV +DV+ LLR +
Sbjct: 257 EEGRIIEFAEKPKGEHLKAMKVDTTILGLDDQRAKEMPFIASMGIYVVSRDVMLDLLRNQ 316
Query: 326 YPTSNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES-PAFHFYDP 383
+P +NDFGSE+IP A + VQAY++ YWEDIGTI++FY AN+ +TK+ P F FYD
Sbjct: 317 FPGANDFGSEVIPGATSLGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDR 376
Query: 384 KTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVML 443
P YT PR+LPP+K+ + + D++I GC ++ C + HS+VG RS + G ++D++++
Sbjct: 377 SAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLM 436
Query: 444 GADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
GADYY+T +E + L A+G VPIG+G+N+ I+ IIDKN +IG +V I+N D
Sbjct: 437 GADYYETATEKSLLSAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIINSD 487
|
|
| UNIPROTKB|P15280 AGPS "Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
Identities = 218/404 (53%), Positives = 293/404 (72%)
Query: 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA 153
+V IILGGGAGT+L+PLT + A PAVP+ YRLIDIP+SNC+NS I+KI+VLTQFNSA
Sbjct: 83 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 142
Query: 154 SLNRHIARTYFGN-GTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
SLNRH++R Y N G +GFVEVLAA Q+P NWFQGTADAVRQ+ W+FE+
Sbjct: 143 SLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSP--DNPNWFQGTADAVRQYLWLFEE---H 197
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
N+ IL GDHLYRMDY FIQ+H + D+DIT++ + E RA+ +GL+KID GRI +
Sbjct: 198 NVMEFLILAGDHLYRMDYEKFIQAHRETDSDITVAALPMDEKRATAFGLMKIDEEGRIVE 257
Query: 273 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332
FAEKP G LKAM VDT++LG A++ PY+ASMG+YV K+V+ +LLR ++P +NDF
Sbjct: 258 FAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYVISKNVMLQLLREQFPGANDF 317
Query: 333 GSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTS 390
GSE+IP A + VQAY++ YWEDIGTI++FY AN+ +TK+ P F FYD P YT
Sbjct: 318 GSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQ 377
Query: 391 PRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQT 450
PR LPP+K+ + + D++I GC ++ C + HS+VG RS + G ++D++++GADYY+T
Sbjct: 378 PRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYET 437
Query: 451 ESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
E++ L +G +PIG+G+N IR IIDKN +IG +V I+N D
Sbjct: 438 EADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDNVKIINVD 481
|
|
| TAIR|locus:2032003 APS2 "AT1G05610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
Identities = 170/410 (41%), Positives = 249/410 (60%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
++VAAI+ GGG+ ++L+PLT + A+P+A YRLID +SNCINSGI KI+ +TQFNS
Sbjct: 53 QSVAAIVFGGGSDSELYPLTKTRSKGAIPIAANYRLIDAVISNCINSGITKIYAITQFNS 112
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
SLN H+++ Y G G D FVEV+AA Q+ + G WFQGTADA+R+ WVFE+
Sbjct: 113 TSLNSHLSKAYSGFGLG-KDRFVEVIAAYQSLEDQG--WFQGTADAIRRCLWVFEEFP-- 167
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASD----YGLVKIDNMG 268
+ +L G HLY+MDY I+ H ADITI VG S +D +G +++D+
Sbjct: 168 -VTEFLVLPGHHLYKMDYKMLIEDHRRSRADITI----VGLSSVTDHDFGFGFMEVDSTN 222
Query: 269 RIAQFAEKPSGANLK-AMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327
+ +F K + A + T G S C V S G+YV ++ + KLLR
Sbjct: 223 AVTRFTIKGQQDLISVANRTATRSDGTS-----SCS-VPSAGIYVIGREQMVKLLRECLI 276
Query: 328 TSNDFGSEIIPAAIMEH-DVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTP 386
S D SEIIP AI E V+A++F YWED+ +I ++Y ANM K ++ FYD + P
Sbjct: 277 KSKDLASEIIPGAISEGMKVKAHMFDGYWEDVRSIGAYYRANMESIK---SYRFYDRQCP 333
Query: 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGAD 446
YT PR LPP+ + I ++II GC L +C + S+VG R+R+ V ++D++++G+D
Sbjct: 334 LYTMPRCLPPSSMSVAVITNSIIGDGCILDKCVIRGSVVGMRTRIADEVIVEDSIIVGSD 393
Query: 447 YYQTESEIASLLAEGKVPI--GVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
Y+ E ++ E K+ I G+G ++IR I+DKN +IGK+V+I+N+D
Sbjct: 394 IYEMEEDVRRKGKEKKIEIRIGIGEKSRIRRAIVDKNARIGKNVMIINRD 443
|
|
| TIGR_CMR|SO_1498 SO_1498 "glucose-1-phosphate adenylyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 142/365 (38%), Positives = 203/365 (55%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL GG G++L LT A PA+ G +R+ID P+SNCINSGI ++ V+TQ+ S SL
Sbjct: 16 ALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKSHSLI 75
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
RH+ R + G+ VE+L A+Q E NW+QGTADAV Q + ++ +
Sbjct: 76 RHVMRGWGHFKKELGES-VEILPASQRYSE---NWYQGTADAVFQNIDII---RHELPKY 128
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASD-YGLVKIDNMGRIAQFAE 275
V +L GDH+YRMDY + +H + AD+T+SC V + A+ +G++++D+ RI F E
Sbjct: 129 VMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPVAEAAGAFGVMEVDDDMRILGFEE 188
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR---WRYPTSNDF 332
KP L P KC +ASMG YVF + LF+ L+ + DF
Sbjct: 189 KPQ------------LPKHCPGNPEKC--LASMGNYVFNTEFLFEQLKKDAQNAESDRDF 234
Query: 333 GSEIIPAAIMEHDVQAYIFRD-------YWEDIGTIKSFYEANMALTKESPAFHFYDPKT 385
G +IIP+ I +H V AY F+ YW D+GT+ SF+ ANM L +PA + YD K
Sbjct: 235 GKDIIPSIIEKHKVFAYPFKSAFPNEQAYWRDVGTLDSFWLANMELLSPTPALNLYDAKW 294
Query: 386 PFYTSPRFLPPTKI---DNCR---IKDAIISHGCFLRECTVEHSIVGERSRL-DYGVELK 438
P +T LPP K D+ R D+IIS GC + TV S++ R+ Y V ++
Sbjct: 295 PIWTYQEQLPPAKFVFDDDDRRGMAVDSIISGGCIISGATVRRSVLFNEVRVCSYSV-VE 353
Query: 439 DTVML 443
D+V+L
Sbjct: 354 DSVVL 358
|
|
| TIGR_CMR|BA_5122 BA_5122 "glucose-1-phosphate adenylyltransferase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 300 (110.7 bits), Expect = 1.2e-46, Sum P(2) = 1.2e-46
Identities = 72/195 (36%), Positives = 104/195 (53%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A++L GG G++L LT A PAVP G YR+ID +SNC NSGI + +LTQ+ L+
Sbjct: 9 AMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQPLELH 68
Query: 157 RHIARTYFGNGTNFG--DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNI 214
+I GN + G V VL SG W+ GTA A+ Q +
Sbjct: 69 NYIG---IGNAWDLDRVSGGVTVLPPYAE--SSGVKWYTGTASAIYQNLNYLSQYEP--- 120
Query: 215 ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFA 274
E V IL GDH+Y+MDY + H++++AD++IS V AS +G++ + I +F
Sbjct: 121 EYVLILSGDHIYKMDYSKMLDYHIEKEADVSISVIEVPWDEASRFGIMNTNEEMEIVEFE 180
Query: 275 EKPS--GANLKAMQV 287
EKP +NL +M +
Sbjct: 181 EKPQFPRSNLASMGI 195
|
|
| UNIPROTKB|Q9KLP4 glgC2 "Glucose-1-phosphate adenylyltransferase 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 117/365 (32%), Positives = 190/365 (52%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
++ A+IL GG G++L PLT A PAVP G YR+ID ++NC++SG+ +I VLTQ+ S
Sbjct: 2 QDTLAVILAGGMGSRLSPLTDDRAKPAVPFGGKYRIIDFTLTNCLHSGLRRILVLTQYKS 61
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
SL++H+ + G+ F+ V+ G GK W++GTADA+ W+ A++
Sbjct: 62 HSLHKHLRNGWSIFNPELGE-FITVVPPQMRKG--GK-WYEGTADALFHNMWLL--ARS- 114
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
+ + V +L GDH+YRMDY ++ H+ ++A +TI+C V AS +G++ ID+ RI
Sbjct: 115 DAKYVVVLSGDHIYRMDYAAMLEEHISKNATLTIACMQVPRHEASAFGVMAIDDDSRITC 174
Query: 273 FAEKPSGANLKAMQVDTSL--LG---FSPQEARKC---PYVASMGVYVFKKDVLFKLLRW 324
F EKP+ + D SL +G F+ +K + F KDV+ KL+
Sbjct: 175 FVEKPADPPCIPNRPDHSLASMGIYIFNMDVLKKALTEDAEIEQSSHDFGKDVIPKLIA- 233
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALTKESPAFHFYDP 383
T + F + + RD YW D+GTI SFY+ANM L + P + Y
Sbjct: 234 ---TGSVFAYSFCSG-------KGRVARDCYWRDVGTIDSFYDANMDLLQPVPPMNLYQK 283
Query: 384 KTPFYTSPRFLPPTK-IDNCRIKD-----AIISHGCFLRECTVEHSIVGERSRLDYGVEL 437
T + PP + + + + +II++G +V+HSI+ R++ +
Sbjct: 284 NWAIRTYEQQYPPARTVSSATGNEGIFINSIIANGVINSGGSVQHSIISSNVRINDSALI 343
Query: 438 KDTVM 442
D+++
Sbjct: 344 VDSIL 348
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| B2IUY3 | GLGC_NOSP7 | 2, ., 7, ., 7, ., 2, 7 | 0.5955 | 0.7911 | 0.9184 | yes | no |
| Q00081 | GLGL1_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.7889 | 0.8755 | 0.9276 | N/A | no |
| B8HM61 | GLGC_CYAP4 | 2, ., 7, ., 7, ., 2, 7 | 0.5519 | 0.7931 | 0.9207 | yes | no |
| B1XLF1 | GLGC_SYNP2 | 2, ., 7, ., 7, ., 2, 7 | 0.5641 | 0.7650 | 0.8881 | yes | no |
| P55242 | GLGL2_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.6411 | 0.9718 | 0.9325 | N/A | no |
| P55243 | GLGL3_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.6313 | 0.8935 | 0.9213 | N/A | no |
| P55241 | GLGL1_MAIZE | 2, ., 7, ., 7, ., 2, 7 | 0.5698 | 0.9136 | 0.8817 | N/A | no |
| B1WT08 | GLGC_CYAA5 | 2, ., 7, ., 7, ., 2, 7 | 0.5558 | 0.7911 | 0.9184 | yes | no |
| Q3MBJ4 | GLGC_ANAVT | 2, ., 7, ., 7, ., 2, 7 | 0.5732 | 0.7911 | 0.9184 | yes | no |
| A5GLA9 | GLGC_SYNPW | 2, ., 7, ., 7, ., 2, 7 | 0.5259 | 0.7951 | 0.9187 | yes | no |
| P12299 | GLGL2_WHEAT | 2, ., 7, ., 7, ., 2, 7 | 0.6689 | 0.8594 | 0.8199 | N/A | no |
| P55233 | GLGL1_BETVU | 2, ., 7, ., 7, ., 2, 7 | 0.646 | 0.9698 | 0.9252 | N/A | no |
| P55231 | GLGL3_ARATH | 2, ., 7, ., 7, ., 2, 7 | 0.7137 | 0.9799 | 0.9366 | yes | no |
| Q5N3K9 | GLGC_SYNP6 | 2, ., 7, ., 7, ., 2, 7 | 0.5643 | 0.7951 | 0.9209 | yes | no |
| P55234 | GLGL2_MAIZE | 2, ., 7, ., 7, ., 2, 7 | 0.6184 | 0.9317 | 0.8905 | N/A | no |
| P30524 | GLGL1_HORVU | 2, ., 7, ., 7, ., 2, 7 | 0.6666 | 0.8594 | 0.8183 | N/A | no |
| B7KDB8 | GLGC_CYAP7 | 2, ., 7, ., 7, ., 2, 7 | 0.5682 | 0.7911 | 0.9184 | yes | no |
| P30521 | GLGC_NOSS1 | 2, ., 7, ., 7, ., 2, 7 | 0.5732 | 0.7911 | 0.9184 | yes | no |
| B7K5U7 | GLGC_CYAP8 | 2, ., 7, ., 7, ., 2, 7 | 0.5732 | 0.7911 | 0.9184 | yes | no |
| Q31QN4 | GLGC_SYNE7 | 2, ., 7, ., 7, ., 2, 7 | 0.5643 | 0.7951 | 0.9209 | yes | no |
| Q9SIK1 | GLGL4_ARATH | 2, ., 7, ., 7, ., 2, 7 | 0.7292 | 0.9317 | 0.8871 | no | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 498 | |||
| PLN02241 | 436 | PLN02241, PLN02241, glucose-1-phosphate adenylyltr | 0.0 | |
| PRK02862 | 429 | PRK02862, glgC, glucose-1-phosphate adenylyltransf | 0.0 | |
| TIGR02091 | 361 | TIGR02091, glgC, glucose-1-phosphate adenylyltrans | 1e-176 | |
| COG0448 | 393 | COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb | 1e-131 | |
| PRK00725 | 425 | PRK00725, glgC, glucose-1-phosphate adenylyltransf | 1e-106 | |
| PRK00844 | 407 | PRK00844, glgC, glucose-1-phosphate adenylyltransf | 1e-103 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 2e-95 | |
| pfam00483 | 247 | pfam00483, NTP_transferase, Nucleotidyl transferas | 3e-90 | |
| cd02508 | 200 | cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory | 8e-72 | |
| COG1208 | 358 | COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph | 1e-38 | |
| cd04181 | 217 | cd04181, NTP_transferase, NTP_transferases catalyz | 9e-34 | |
| TIGR02092 | 369 | TIGR02092, glgD, glucose-1-phosphate adenylyltrans | 2e-33 | |
| cd04651 | 104 | cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly | 3e-24 | |
| cd06915 | 223 | cd06915, NTP_transferase_WcbM_like, WcbM_like is a | 6e-16 | |
| cd04189 | 236 | cd04189, G1P_TT_long, G1P_TT_long represents the l | 5e-15 | |
| cd06426 | 220 | cd06426, NTP_transferase_like_2, NTP_trnasferase_l | 6e-15 | |
| TIGR03992 | 393 | TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph | 1e-14 | |
| COG1209 | 286 | COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel | 2e-14 | |
| TIGR01208 | 353 | TIGR01208, rmlA_long, glucose-1-phosphate thymidyl | 4e-11 | |
| cd02538 | 240 | cd02538, G1P_TT_short, G1P_TT_short is the short f | 2e-07 | |
| TIGR01207 | 286 | TIGR01207, rmlA, glucose-1-phosphate thymidylyltra | 1e-06 | |
| PRK15480 | 292 | PRK15480, PRK15480, glucose-1-phosphate thymidylyl | 1e-05 | |
| cd02541 | 267 | cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca | 2e-05 | |
| cd02507 | 216 | cd02507, eIF-2B_gamma_N_like, The N-terminal of eI | 3e-05 | |
| TIGR01173 | 451 | TIGR01173, glmU, UDP-N-acetylglucosamine diphospho | 6e-05 | |
| cd06425 | 233 | cd06425, M1P_guanylylT_B_like_N, N-terminal domain | 8e-05 | |
| COG1207 | 460 | COG1207, GlmU, N-acetylglucosamine-1-phosphate uri | 9e-05 | |
| cd04198 | 214 | cd04198, eIF-2B_gamma_N, The N-terminal domain of | 2e-04 | |
| cd02540 | 229 | cd02540, GT2_GlmU_N_bac, N-terminal domain of bact | 4e-04 | |
| cd06422 | 221 | cd06422, NTP_transferase_like_1, NTP_transferase_l | 0.002 | |
| cd05787 | 79 | cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit | 0.004 |
| >gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 816 bits (2110), Expect = 0.0
Identities = 309/405 (76%), Positives = 355/405 (87%), Gaps = 4/405 (0%)
Query: 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN 151
PK+VAAIILGGGAGT+LFPLT R A PAVP+ G YRLIDIPMSNCINSGINKI+VLTQFN
Sbjct: 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFN 60
Query: 152 SASLNRHIARTY-FGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAK 210
SASLNRH++R Y FGNG NFGDGFVEVLAATQTPGE G WFQGTADAVRQF W+FEDAK
Sbjct: 61 SASLNRHLSRAYNFGNGGNFGDGFVEVLAATQTPGEKG--WFQGTADAVRQFLWLFEDAK 118
Query: 211 NRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 270
N+N+E V IL GDHLYRMDYMDF+Q H + ADITI+C V ESRASD+GL+KID+ GRI
Sbjct: 119 NKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRI 178
Query: 271 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330
+F+EKP G LKAMQVDT++LG SP+EA++ PY+ASMG+YVFKKDVL KLLRWR+PT+N
Sbjct: 179 IEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238
Query: 331 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYT 389
DFGSEIIP AI E ++VQAY+F YWEDIGTIKSFYEAN+ALTK+ P F FYDP P YT
Sbjct: 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYT 298
Query: 390 SPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQ 449
SPRFLPP+KI++CRI D+IISHGCFLREC +EHS+VG RSR+ GVE++DTVM+GADYY+
Sbjct: 299 SPRFLPPSKIEDCRITDSIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYE 358
Query: 450 TESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
TE EIASLLAEGKVPIG+G NTKIRN IIDKN +IGK+VVI+NKD
Sbjct: 359 TEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKD 403
|
Length = 436 |
| >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 636 bits (1643), Expect = 0.0
Identities = 230/403 (57%), Positives = 297/403 (73%), Gaps = 9/403 (2%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
K V AIILGGGAGT+L+PLT A PAVP+AG YRLIDIP+SNCINSGINKI+VLTQFNS
Sbjct: 2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNS 61
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
ASLNRHI++TY N F GFVEVLAA QTP +WFQGTADAVR++ W F+
Sbjct: 62 ASLNRHISQTY--NFDGFSGGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQ---EW 114
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
+++ IL GD LYRMDY F+Q H + ADIT++ V E AS +GL+K D+ GRI +
Sbjct: 115 DVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITE 174
Query: 273 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332
F+EKP G LKAM VDTS LG SP+EA+ PY+ASMG+YVF +DVLF LL + P DF
Sbjct: 175 FSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLN-KNPEYTDF 233
Query: 333 GSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE-SPAFHFYDPKTPFYTSP 391
G EIIP AI ++ VQ+Y+F YWEDIGTI++FYEAN+ALT++ +P F FYD K P YT
Sbjct: 234 GKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRA 293
Query: 392 RFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTE 451
R+LPP+K+ + I ++II+ GC ++ C++ HS++G RSR++ G ++DT+++GAD+Y++
Sbjct: 294 RYLPPSKLLDATITESIIAEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESS 353
Query: 452 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
E L EGK P+G+G T I+ IIDKN +IG +V IVNKD
Sbjct: 354 EEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKD 396
|
Length = 429 |
| >gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 499 bits (1288), Expect = e-176
Identities = 181/401 (45%), Positives = 239/401 (59%), Gaps = 45/401 (11%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A++L GG G++L PLT R A PAVP G YR+ID P+SNCINSGI +I VLTQ+ S SLN
Sbjct: 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLN 60
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
RHI R + +G F DGFV +L A Q ESG +W+QGTADAV Q + ED + E
Sbjct: 61 RHIQRGWDFDG--FIDGFVTLLPAQQR--ESGTDWYQGTADAVYQNLDLIEDY---DPEY 113
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
V IL GDH+Y+MDY + H++ AD+TI+C V AS +G++++D GRI F EK
Sbjct: 114 VLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEK 173
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR---YPTSNDFG 333
P AN ++ +ASMG+Y+F KDVL +LL +S+DFG
Sbjct: 174 P--ANPPSIP------------GMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFG 219
Query: 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRF 393
+IIP A+ E VQAY+F YW D+GTI SF+EANM L P F YD K P YT F
Sbjct: 220 KDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEF 279
Query: 394 LPPTKIDNCR--IKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTE 451
LPP K + + D+++S GC + TV HS++G R R+ G ++D+V++G
Sbjct: 280 LPPAKFVDSDAQVVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD------ 333
Query: 452 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492
+G+GR IRN IIDKNV+IG+ VVI N
Sbjct: 334 -------------VGIGRGAVIRNAIIDKNVRIGEGVVIGN 361
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361 |
| >gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 385 bits (992), Expect = e-131
Identities = 154/407 (37%), Positives = 218/407 (53%), Gaps = 49/407 (12%)
Query: 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN 151
KNV AIIL GG G++L PLT A PAVP G YR+ID +SNC+NSGI +I VLTQ+
Sbjct: 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYK 62
Query: 152 SASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN 211
S SLN HI R + + +G V +L A Q G G+ W++GTADA+ Q + +
Sbjct: 63 SHSLNDHIGRGWPW-DLDRKNGGVFILPAQQREG--GERWYEGTADAIYQNLLIIRRS-- 117
Query: 212 RNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA 271
+ E V IL GDH+Y+MDY D + H++ AD+T++ V AS +G++ +D GRI
Sbjct: 118 -DPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRII 176
Query: 272 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW---RYPT 328
+F EKP SL ASMG+Y+F D+L +LL +
Sbjct: 177 EFVEKP-----ADGPPSNSL--------------ASMGIYIFNTDLLKELLEEDAKDPNS 217
Query: 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFY 388
S+DFG +IIP + V AY F YW D+GTI S+YEANM L P + YD P Y
Sbjct: 218 SHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIY 277
Query: 389 TSPRFLPPTKIDNCR-IKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADY 447
T + LPP K N + +++++ GC + TVE+S++ R+ G ++++V++
Sbjct: 278 TKNKNLPPAKFVNDSEVSNSLVAGGCII-SGTVENSVLFRGVRIGKGSVIENSVIMPD-- 334
Query: 448 YQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
+ +G +R IIDKNV IG+ VVI
Sbjct: 335 -----------------VEIGEGAVLRRAIIDKNVVIGEGVVIGGDK 364
|
Length = 393 |
| >gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 322 bits (827), Expect = e-106
Identities = 152/446 (34%), Positives = 223/446 (50%), Gaps = 76/446 (17%)
Query: 78 MTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCI 137
L R+ ++ A+IL GG G++L LT + A PAV G +R+ID +SNCI
Sbjct: 1 EKNDSLMLARQL--TRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCI 58
Query: 138 NSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG----FVEVLAATQTPGESGKNWFQ 193
NSGI +I VLTQ+ + SL RHI R G +F FV++L A Q +NW++
Sbjct: 59 NSGIRRIGVLTQYKAHSLIRHIQR-----GWSFFREELGEFVDLLPAQQR--VDEENWYR 111
Query: 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253
GTADAV Q + + + V IL GDH+Y+MDY + HV+ AD T++C V
Sbjct: 112 GTADAVYQNLDIIRRY---DPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPR 168
Query: 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAM--QVDTSLLGFSPQEARKCPYVASMGVY 311
AS +G++ +D RI F EKP AN AM D SL ASMG+Y
Sbjct: 169 EEASAFGVMAVDENDRITAFVEKP--ANPPAMPGDPDKSL--------------ASMGIY 212
Query: 312 VFKKDVLFKLLRW--RYPTSN-DFGSEIIPAAIMEHDVQAYIFRD-----------YWED 357
VF D L++LL P S+ DFG +IIP + E V A+ F D YW D
Sbjct: 213 VFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRD 272
Query: 358 IGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI----DNCR--IKDAIISH 411
+GT+ ++++AN+ L +P YD P +T LPP K R ++++S
Sbjct: 273 VGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSG 332
Query: 412 GCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVP-IGVGRN 470
GC + V S++ R R++ ++D+V+L P + VGR+
Sbjct: 333 GCIISGAVVRRSVLFSRVRVNSFSNVEDSVLL--------------------PDVNVGRS 372
Query: 471 TKIRNCIIDKNVKIGKDVVI-VNKDE 495
++R C+ID+ I + +VI + +E
Sbjct: 373 CRLRRCVIDRGCVIPEGMVIGEDPEE 398
|
Length = 425 |
| >gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 314 bits (807), Expect = e-103
Identities = 142/424 (33%), Positives = 210/424 (49%), Gaps = 62/424 (14%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
V AI+L GG G +L PLT A PAVP G YRLID +SN +NSG +I+VLTQ+ S
Sbjct: 4 PKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKS 63
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
SL+RHI++T+ + ++ + A Q GK W+ G+ADA+ Q + ED
Sbjct: 64 HSLDRHISQTW--RLSGLLGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIEDEDP- 117
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
+ V + DH+YRMD + H++ A +T++ V AS +G++++D GRI
Sbjct: 118 --DYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRG 175
Query: 273 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PTS 329
F EKP A+ + D P EA +ASMG YVF D L LR +S
Sbjct: 176 FLEKP--ADPPGLPDD-------PDEA-----LASMGNYVFTTDALVDALRRDAADEDSS 221
Query: 330 NDFGSEIIPAAIMEHDVQAYIF------------RDYWEDIGTIKSFYEANMALTKESPA 377
+D G +IIP + Y F R YW D+GTI ++Y+A+M L P
Sbjct: 222 HDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPV 281
Query: 378 FHFYDPKTPFYTSPRFLPPTKI-----DNCRIKDAIISHGCFLRECTVEHSIVGERSRLD 432
F+ Y+ + P YTS LPP K +D+++S G + TV +S++ ++
Sbjct: 282 FNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVE 341
Query: 433 YGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI-V 491
G E++D+V++ V I GR +R I+DKNV + I V
Sbjct: 342 SGAEVEDSVLM-----------------DGVRI--GRGAVVRRAILDKNVVVPPGATIGV 382
Query: 492 NKDE 495
+ +E
Sbjct: 383 DLEE 386
|
Length = 407 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 293 bits (752), Expect = 2e-95
Identities = 144/422 (34%), Positives = 205/422 (48%), Gaps = 78/422 (18%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
K + A+IL GG GT+L LT A PAVP G YR+ID +SNC NSGI+ + VLTQ+
Sbjct: 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQP 61
Query: 153 ASLNRHIARTYFGNGTNFG----DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFED 208
LN HI G G+ + +G V +L G W++GTA A+ Q
Sbjct: 62 LELNNHI-----GIGSPWDLDRINGGVTILPPYS--ESEGGKWYKGTAHAIYQ------- 107
Query: 209 AKNRNI--------ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYG 260
NI E V IL GDH+Y+MDY + H +++AD+TI+ V AS +G
Sbjct: 108 ----NIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFG 163
Query: 261 LVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320
++ D RI +F EKP N K S L ASMG+Y+F L +
Sbjct: 164 IMNTDENMRIVEFEEKP--KNPK------SNL-------------ASMGIYIFNWKRLKE 202
Query: 321 LLRWRYPT---SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESP 376
L S+DFG +IP + E + AY F+ YW+D+GTI+S +EANM L +
Sbjct: 203 YLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPEN 262
Query: 377 AFHFYDPKTPFYTSPRFLPPTKI-DNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGV 435
+ +D Y+ LPP I +N ++K++++ GC + TVEHS++ + ++ G
Sbjct: 263 PLNLFDRNWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVV-YGTVEHSVLFQGVQVGEGS 321
Query: 436 ELKDTV-MLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
+KD+V M GA +G N I II +N IG V+I
Sbjct: 322 VVKDSVIMPGAK--------------------IGENVVIERAIIGENAVIGDGVIIGGGK 361
Query: 495 ES 496
E
Sbjct: 362 EV 363
|
Length = 380 |
| >gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase | Back alignment and domain information |
|---|
Score = 275 bits (705), Expect = 3e-90
Identities = 89/284 (31%), Positives = 129/284 (45%), Gaps = 44/284 (15%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINK-IFVLTQFNSASL 155
AIIL GG+GT+L+PLT A P VPV Y +I +S +N+GI + I + TQ + +
Sbjct: 2 AIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFLV 61
Query: 156 NRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIE 215
+ FG ++V A Q GTA AV D E
Sbjct: 62 AEQLGDGS-----KFG---LQVTYALQPEPR-------GTAPAVALAADFLGDDDP---E 103
Query: 216 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
V +L GDH+YRMD+ + +Q + AD T++ V + YG+++ D GR+ +F E
Sbjct: 104 LVLVLGGDHIYRMDFEEAVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDENGRVIRFVE 163
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR--WRYPTSNDFG 333
KP K ASMG+Y F V L + D
Sbjct: 164 KPDLP--------------------KASNYASMGIYFFNSGVFLFLAKYLKELARGEDEI 203
Query: 334 SEIIPAAIMEHDVQ-AYIFRD--YWEDIGTIKSFYEANMALTKE 374
++ IPAA+ + D+ A++FR YW D+GT S +EAN+ L
Sbjct: 204 TDAIPAALEDGDLDLAFLFRGYAYWSDVGTWDSLWEANLKLLTG 247
|
This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247 |
| >gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 8e-72
Identities = 93/263 (35%), Positives = 126/263 (47%), Gaps = 64/263 (24%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
AIIL GG GT+L PLT + A PAVP G YRLID P+SN +NSGI + VLTQ+ S SLN
Sbjct: 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLN 60
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
H+ + + +G + +L Q G +W++GTADA+ Q E + E
Sbjct: 61 DHLGSGKEWDL-DRKNGGLFILPPQQRKGG---DWYRGTADAIYQNLDYIERSDP---EY 113
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
V IL GDH+Y MDY + + H++ ADIT+ +AS MG
Sbjct: 114 VLILSGDHIYNMDYREMLDFHIESGADITVVY------KAS---------MG-------- 150
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY-PTSNDFGSE 335
+Y+F KD+L +LL S+DFG +
Sbjct: 151 ---------------------------------IYIFSKDLLIELLEEDAADGSHDFGKD 177
Query: 336 IIPAAIMEHDVQAYIFRDYWEDI 358
IIPA + + + AY F YW DI
Sbjct: 178 IIPAMLKKLKIYAYEFNGYWADI 200
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200 |
| >gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 1e-38
Identities = 100/403 (24%), Positives = 166/403 (41%), Gaps = 81/403 (20%)
Query: 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA 153
+ A+IL GG GT+L PLT P +P+AG LI+ + +G+ +I ++
Sbjct: 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAG-KPLIEYVLEALAAAGVEEIVLVV----G 55
Query: 154 SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR- 212
L I YFG+G G V+ GTA A++ A +
Sbjct: 56 YLGEQIEE-YFGDGEGLGVRITYVVEKEPL----------GTAGALKN-------ALDLL 97
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID-NMGRIA 271
++ +L GD L +D + ++ H + A TI A S++G+V+ D GR+
Sbjct: 98 GGDDFLVLNGDVLTDLDLSELLEFHKKKGALATI--ALTRVLDPSEFGVVETDDGDGRVV 155
Query: 272 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331
+F EKP + + G+Y+F +V F + D
Sbjct: 156 EFREKPGPEEPP-------------------SNLINAGIYIFDPEV-FDYI--EKGERFD 193
Query: 332 FGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTS 390
F E++PA + DV Y+F YW DIGT + EAN L + D K+P
Sbjct: 194 FEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLR-------GDGKSPLGPI 246
Query: 391 PRFLPPTKIDNCRIK-DAIISHGCFLRECTV--EHSIVGERSRLDYGVELKDTVMLGADY 447
P I + I +I G + + ++++GE + GVE+K+++++
Sbjct: 247 EE--PVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIM---- 300
Query: 448 YQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI 490
+ V +G + I + II +N KIG ++I
Sbjct: 301 ------------DNVV---IGHGSYIGDSIIGENCKIGASLII 328
|
Length = 358 |
| >gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 9e-34
Identities = 70/264 (26%), Positives = 118/264 (44%), Gaps = 48/264 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL G GT+L PLT P +P+AG +++ + +GI++I ++ + +
Sbjct: 1 AVILAAGKGTRLRPLTDTRPKPLLPIAG-KPILEYIIERLARAGIDEIILVVGYLGEQI- 58
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNI-E 215
YFG+G+ FG V + Q GTA AVR A++ +
Sbjct: 59 ----EEYFGDGSKFG---VNIEYVVQEEPL-------GTAGAVRN-------AEDFLGDD 97
Query: 216 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
+ ++ GD L +D + ++ H ++ AD TI+ V S YG+V++D+ GR+ +F E
Sbjct: 98 DFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEV--EDPSRYGVVELDDDGRVTRFVE 155
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSE 335
KP+ +A+ G+Y+F+ ++ + P D ++
Sbjct: 156 KPTLPE---------------------SNLANAGIYIFEPEI-LDYIPEILPRGEDELTD 193
Query: 336 IIPAAIMEHDVQAYIFRDYWEDIG 359
IP I E V Y YW DIG
Sbjct: 194 AIPLLIEEGKVYGYPVDGYWLDIG 217
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217 |
| >gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 2e-33
Identities = 101/422 (23%), Positives = 171/422 (40%), Gaps = 77/422 (18%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
++AII + L PLT ++P G YRLID P+SN +N+GI +F+ +
Sbjct: 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKE 60
Query: 153 -ASLNRHIARTYFGNGTNFG-----DG-FVEVLAATQTPGESGKNWFQGTADAVRQFTWV 205
SL H+ G+G + DG FV + + R F+
Sbjct: 61 RQSLFDHL-----GSGREWDLHRKRDGLFVFPY---NDRDDLSEGGK-------RYFSQN 105
Query: 206 FEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID 265
E K E +L + +D ++ H + DIT+ V + AS+Y
Sbjct: 106 LEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYD----- 160
Query: 266 NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325
I +F E ++ L +E S+ +Y+ D+L +LL
Sbjct: 161 ---TILRFDESGKVKSIG------QNLNPEEEENI------SLDIYIVSTDLLIELLY-- 203
Query: 326 YPTSNDFGSEIIPAAIM-----EHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFH- 379
G ++ E ++ AY + Y +I ++KS+Y+ANM L P
Sbjct: 204 --ECIQRGKLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLD--PQNFQ 259
Query: 380 --FYDPKTPFYTSPRFLPPTK-IDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVE 436
FY + P YT + PPT +N +++++++++GC + E VE+SI+ +
Sbjct: 260 SLFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCII-EGKVENSILSRGVHVGKDAL 318
Query: 437 LKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDES 496
+K+ +++ + I G + N IIDK+V I +V I E
Sbjct: 319 IKNCIIM------QRTVI-------------GEGAHLENVIIDKDVVIEPNVKIAGTSEQ 359
Query: 497 PL 498
PL
Sbjct: 360 PL 361
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 369 |
| >gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 3e-24
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 19/101 (18%)
Query: 395 PPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI 454
PP +K++++S GC + TVE+S++ R+ G ++D+V++
Sbjct: 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPNV-------- 52
Query: 455 ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495
G+GRN IR IIDKNV I VVI E
Sbjct: 53 -----------GIGRNAVIRRAIIDKNVVIPDGVVIGGDPE 82
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104 |
| >gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 6e-16
Identities = 62/272 (22%), Positives = 105/272 (38%), Gaps = 51/272 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL GG GT+L + P PVAG ++ + GI++I + + L
Sbjct: 1 AVILAGGLGTRLRSVVKDLPKPLAPVAG-RPFLEYLLEYLARQGISRIVLSVGY----LA 55
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR-NIE 215
I YFG+G G P GT A++ A + +
Sbjct: 56 EQI-EEYFGDGYRGG--IRIYYVIEPEP--------LGTGGAIKN-------ALPKLPED 97
Query: 216 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
+L GD + +D + + + AD T++ V + AS YG V +D GR+ F E
Sbjct: 98 QFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--ASRYGNVTVDGDGRVIAFVE 155
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSE 335
K GA + GVY+ +K++L ++ S ++
Sbjct: 156 KGPGAAPG--------------------LING-GVYLLRKEILAEIP--ADAFS--LEAD 190
Query: 336 IIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367
++PA + + + Y+ DIG + + A
Sbjct: 191 VLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223 |
| >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 5e-15
Identities = 70/281 (24%), Positives = 104/281 (37%), Gaps = 62/281 (22%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
+IL GG GT+L PLT +PVAG +I + + +GI I ++
Sbjct: 3 GLILAGGKGTRLRPLTYTRPKQLIPVAG-KPIIQYAIEDLREAGIEDIGIVV-----GPT 56
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ G+G+ FG +L G A AV D E
Sbjct: 57 GEEIKEALGDGSRFGVRITYILQEEP----------LGLAHAV----LAARDFLGD--EP 100
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
+ GD+L + ++ ++ DAD +I A V + R +G+ +D+ GRI + EK
Sbjct: 101 FVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVEDPRR--FGVAVVDD-GRIVRLVEK 157
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL--FKLLR--WRYPTSNDF 332
P + S L A +GVY F + L+ WR
Sbjct: 158 P--------KEPPSNL-------------ALVGVYAFTPAIFDAISRLKPSWR------- 189
Query: 333 GSEIIPAAIME-----HDVQAYIFRDYWEDIGTIKSFYEAN 368
G I AI V I +W+D GT + EAN
Sbjct: 190 GELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEAN 230
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 |
| >gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 6e-15
Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 72/282 (25%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
+I+ GG GT+L PLT P + V G +++ + I G ++ S+N
Sbjct: 1 VVIMAGGKGTRLRPLTENTPKPMLKVGG-KPILETIIDRFIAQGFRNFYI-------SVN 52
Query: 157 --RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ-----GTADAVRQFTWVFEDA 209
+ YFG+G+ FG V + ++ + GTA A+
Sbjct: 53 YLAEMIEDYFGDGSKFG---VNI------------SYVREDKPLGTAGALSLL------- 90
Query: 210 KNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR 269
+ + ++ GD L ++Y + H + +AD T+ C E + YG+V+ + GR
Sbjct: 91 PEKPTDPFLVMNGDILTNLNYEHLLDFHKENNADATV-CVREYEVQVP-YGVVETEG-GR 147
Query: 270 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329
I EKP+ ++ + G+YV + +VL
Sbjct: 148 ITSIEEKPT-----------------------HSFLVNAGIYVLEPEVL------DLIPK 178
Query: 330 NDF--GSEIIPAAIMEHD-VQAYIFRDYWEDIGTIKSFYEAN 368
N+F ++I I E V + +YW DIG + + +AN
Sbjct: 179 NEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220 |
| >gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 1e-14
Identities = 72/283 (25%), Positives = 113/283 (39%), Gaps = 60/283 (21%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL G GT++ PLT P +PVAG L++ + ++GI+ + +
Sbjct: 3 AVILAAGKGTRMRPLTETRPKPMLPVAG-KPLLEHIIEALRDAGIDDFVFVVGY----GK 57
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ R YFG+G+ G V + Q GTADA+ AK +
Sbjct: 58 EKV-REYFGDGSRGG---VPIEYVVQEEQL-------GTADALGS-------AKEYVDDE 99
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
+L GD L D ++ + + +A + A V SDYG+V+ D GR+ EK
Sbjct: 100 FLVLNGDVLLDSDLLERL---IRAEAP---AIAVVEVDDPSDYGVVETDG-GRVTGIVEK 152
Query: 277 PSGA--NLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGS 334
P NL + G+Y+F ++ F+LL + S
Sbjct: 153 PENPPSNL-----------------------INAGIYLFSPEI-FELLE-KTKLSPRGEY 187
Query: 335 EI---IPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374
E+ + I E V+A +W D+G +AN AL
Sbjct: 188 ELTDALQLLIDEGKVKAVELDGFWLDVGRPWDLLDANEALLDN 230
|
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393 |
| >gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 67/288 (23%), Positives = 110/288 (38%), Gaps = 72/288 (25%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
+IL GG+GT+L PLT +PV +I P+ + +GI I ++
Sbjct: 3 GVILAGGSGTRLRPLTRVVPKQLLPVYD-KPMIYYPLETLMLAGIRDILIVVGPEDKPTF 61
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQT-PGESGKNWFQGTADAV---RQFTWVFEDAKNR 212
+ + G+G++FG V++ A Q P G A AV F
Sbjct: 62 KEL----LGDGSDFG---VDITYAVQPEPD--------GLAHAVLIAEDFV--------- 97
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
++ + GD++++ + ++ + + TI V + YG+V+ D G++
Sbjct: 98 GDDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSR--YGVVEFDEDGKVIG 155
Query: 273 FAEKPS--GANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL--FKLLR--WRY 326
EKP +NL A G+Y + V K ++ R
Sbjct: 156 LEEKPKEPKSNL-----------------------AVTGLYFYDPSVFEAIKQIKPSAR- 191
Query: 327 PTSNDFG-SEIIPA--AIMEHD--VQAYIFRDYWEDIGTIKSFYEANM 369
G EI A +E V A + R +W D GT +S EAN
Sbjct: 192 ------GELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANN 233
|
Length = 286 |
| >gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 83/403 (20%), Positives = 147/403 (36%), Gaps = 88/403 (21%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL G GT+L PLT +PVA ++ + + +GI I ++ +
Sbjct: 2 ALILAAGKGTRLRPLTFTRPKQLIPVAN-KPILQYAIEDLAEAGITDIGIVV----GPVT 56
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ G G FG ++ G A AV D ++
Sbjct: 57 GEEIKEIVGEGERFGAKITYIVQGEP----------LGLAHAVYTARDFLGD------DD 100
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
+ GD+L + F++S ++D D I V + A +G+ +++ RI + EK
Sbjct: 101 FVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRDPTA--FGVAVLEDGKRILKLVEK 158
Query: 277 PSG--ANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR-----WRYPTS 329
P +NL A +G+Y+F + ++F+ ++ WR
Sbjct: 159 PKEPPSNL-----------------------AVVGLYMF-RPLIFEAIKNIKPSWR---- 190
Query: 330 NDFGSEIIPAAI---MEHD--VQAYIFRDYWEDIGTIKSFYEANMALTKE-SPAFHFYDP 383
G I AI +E V +W+D G + +AN + E D
Sbjct: 191 ---GELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQGVDD 247
Query: 384 KTPFYTSPRFLPPTKIDNCRIKD-AIISHGCFLRECTVEH-SIVGERSRLDYGVELKDTV 441
++ KI N I+ A+I C + + + +GE + E++ ++
Sbjct: 248 ESKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDA-EVEHSI 306
Query: 442 MLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 484
+L ES I G +I + +I K V+I
Sbjct: 307 VL------DESVI------------EGVQARIVDSVIGKKVRI 331
|
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353 |
| >gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 68/297 (22%), Positives = 111/297 (37%), Gaps = 88/297 (29%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L+PLT + +PV +I P+S + +GI +I +++
Sbjct: 3 GIILAGGSGTRLYPLTKVVSKQLLPV-YDKPMIYYPLSTLMLAGIREILIIST------P 55
Query: 157 RHIARTY--FGNGTNFGDGFVEVLAATQ-TPGESGKNWFQGTADAV---RQFTWVFEDAK 210
+ G+G++ G + + A Q PG G A A +F
Sbjct: 56 EDLPLFKELLGDGSDLG---IRITYAVQPKPG--------GLAQAFIIGEEFI------- 97
Query: 211 NRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASD---YGLVKIDNM 267
+ V ++ GD+++ Y + + R A A V +D YG+V+ D
Sbjct: 98 --GDDPVCLILGDNIF---YGQGLSPILQRAAAQKEG-ATVFGYEVNDPERYGVVEFDEN 151
Query: 268 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327
GR+ EKP + K Y A G+Y + DV
Sbjct: 152 GRVLSIEEKP--------------------KKPKSNY-AVTGLYFYDNDVF--------- 181
Query: 328 TSNDFGSEIIPAAIME---HDV-QAYIFR-----------DYWEDIGTIKSFYEANM 369
+ ++ P+A E DV Y+ + W D GT +S EA+
Sbjct: 182 ---EIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASN 235
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240 |
| >gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 28/184 (15%)
Query: 98 IILGGGAGTKLFPLTLRAATPAVPVAGCYR--LIDIPMSNCINSGINKIFVLTQFNSASL 155
IIL GG+GT+L+P+T + +P+ Y +I P+S + +GI I +++
Sbjct: 3 IILAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 59
Query: 156 NRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIE 215
+ + G+G+ +G V + A Q + D + Q + ED +
Sbjct: 60 FQQL----LGDGSQWG---VNLSYAVQP-----------SPDGLAQAFIIGEDFIGG--D 99
Query: 216 NVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFA 274
A++ GD++ Y D D ++ R++ T+ V + YG+V+ D+ GR
Sbjct: 100 PSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSDPER--YGVVEFDSNGRAISIE 157
Query: 275 EKPS 278
EKP+
Sbjct: 158 EKPA 161
|
Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286 |
| >gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 24/186 (12%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
K IIL GG+GT+L+P+T+ + +P+ +I P+S + +GI I +++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYD-KPMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
+ + G+G+ +G + Q + D + Q + E+
Sbjct: 61 TPRFQQL----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGG 102
Query: 213 NIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA 271
++ A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G
Sbjct: 103 --DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQNGTAI 158
Query: 272 QFAEKP 277
EKP
Sbjct: 159 SLEEKP 164
|
Length = 292 |
| >gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 70/311 (22%), Positives = 106/311 (34%), Gaps = 81/311 (26%)
Query: 97 AIILGGGAGTKLFPLTLRAATPA--VPVAGCYRLIDIP-----MSNCINSGINKIFVLTQ 149
A+I G GT+ P T A P +P+ +D P + + +GI I ++T
Sbjct: 3 AVIPAAGLGTRFLPAT--KAIPKEMLPI------VDKPVIQYIVEEAVAAGIEDIIIVTG 54
Query: 150 FNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF--Q----GTADAVRQFT 203
++ H R+Y T G ++L + + + Q G AV
Sbjct: 55 RGKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQKEPLGLGHAV---- 110
Query: 204 WVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADI----------TISCAAVGE 253
+ E A+L GD D I S + I+ V
Sbjct: 111 LCAKPFIGD--EPFAVLLGD--------DLIDSKEPCLKQLIEAYEKTGASVIAVEEVPP 160
Query: 254 SRASDYGLVKI----DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPY-VASM 308
S YG+VK ++ ++ EKP P+EA P +A +
Sbjct: 161 EDVSKYGIVKGEKIDGDVFKVKGLVEKPK-----------------PEEA---PSNLAIV 200
Query: 309 GVYVFKKDVLFKLLRWRYPTSNDFGSEI-----IPAAIMEHDVQAYIFRDYWEDIGTIKS 363
G YV D+ F +L P G EI I + E V AY+F D G
Sbjct: 201 GRYVLTPDI-FDILENTKP---GKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLG 256
Query: 364 FYEAN--MALT 372
+ +A AL
Sbjct: 257 YLKATVEFALK 267
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267 |
| >gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A++L G G++ PLT +PVA LID + +G+ ++FV+ +S ++
Sbjct: 3 AVVLADGFGSRFLPLTSDIPKALLPVANVP-LIDYTLEWLEKAGVEEVFVVCCEHSQAII 61
Query: 157 RHI 159
H+
Sbjct: 62 EHL 64
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216 |
| >gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 75/356 (21%), Positives = 124/356 (34%), Gaps = 89/356 (25%)
Query: 190 NWFQ-----GTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDYM-DFIQSHVDRDA 242
NW GT AV Q D +V +L GD L + + +++H R
Sbjct: 67 NWVLQAEQLGTGHAVLQALPFLPDD-----GDVLVLYGDVPLISAETLERLLEAH--RQN 119
Query: 243 DITISCAAVGESRASDYGLVKIDNMGRIAQFAE-KPSGANLKAMQ-VDTSLLGFSPQEAR 300
IT+ A + + + YG + +N G++ E K + A KA++ ++T
Sbjct: 120 GITLLTAKLPD--PTGYGRIIRENDGKVTAIVEDKDANAEQKAIKEINT----------- 166
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSND------FGSEIIPAAIMEHD-VQAYIFRD 353
GVYVF L RW SN+ + +++I A+ + + V+A D
Sbjct: 167 --------GVYVFDGA---ALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDD 215
Query: 354 YWEDIG--TIKSFYEANMALTKESPAFH------FYDPKTPF-------------YTSPR 392
E +G + L + DP +
Sbjct: 216 SDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVI 275
Query: 393 FLPPTKIDN-------CRIKDAIISHGCFLRE-CTVEHSIVGERS------RLDYGVELK 438
KI + C IK+++I ++ +E S +GE RL G L
Sbjct: 276 LEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLG 335
Query: 439 DTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
V +G E++ A + K G + + + I NV IG + N D
Sbjct: 336 AGVHIGN---FVETKNARIGKGSKA----GHLSYLGDAEIGSNVNIGAGTITCNYD 384
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451 |
| >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 8e-05
Identities = 40/135 (29%), Positives = 53/135 (39%), Gaps = 30/135 (22%)
Query: 232 DFIQSHVDRDADITISCAAVGESRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTS 290
+ + H A+ TI V + S YG+V D N GRI +F EKP
Sbjct: 119 ELLDFHKKHGAEGTILVTKVEDP--SKYGVVVHDENTGRIERFVEKP------------- 163
Query: 291 LLGFSPQEARKCPYVASMGVYVFKKDVLFKL-LRWRYPTSNDFGSEIIPAAIMEHDVQAY 349
+ A G+Y+ VL ++ LR PTS EI P E + AY
Sbjct: 164 ------KVFVGNKINA--GIYILNPSVLDRIPLR---PTS--IEKEIFPKMASEGQLYAY 210
Query: 350 IFRDYWEDIGTIKSF 364
+W DIG K F
Sbjct: 211 ELPGFWMDIGQPKDF 225
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 |
| >gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 9e-05
Identities = 95/454 (20%), Positives = 152/454 (33%), Gaps = 115/454 (25%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAV--PVAGCYRLIDIPMSNCINSGINKIFVLTQF 150
+++A+IL G GT++ ++ P V PVAG PM + I+ L
Sbjct: 1 MSLSAVILAAGKGTRM-----KSDLPKVLHPVAG------KPM---LEHVIDAARALG-- 44
Query: 151 NSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF-----QGTADAVRQFTWV 205
I G G +V A + + GT AV Q
Sbjct: 45 -----PDDIVVVV-------GHGAEQVREALAERDDV--EFVLQEEQLGTGHAVLQALPA 90
Query: 206 FEDAKNRNIENVAILCGDH-LYRMDYM-DFIQSHVDRDADITISCAAVGESRASD---YG 260
D + +V +L GD L + + + + +H A T+ A D YG
Sbjct: 91 LADDYD---GDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTA-----ELDDPTGYG 142
Query: 261 LVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320
+ D G + E + D S +E ++ + + G+Y F L +
Sbjct: 143 RIVRDGNGEVTAIVE----------EKDAS------EEEKQIKEINT-GIYAFDGAALLR 185
Query: 321 LLRWRYPTSNDFG----SEIIPAAIMEH-DVQAYIFRDYWEDIG--TIKSFYEANMALTK 373
L + +N G +++I A E V+A D E +G EA + +
Sbjct: 186 ALP-KLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQR 244
Query: 374 ESPAFH------FYDPKTPF-------------YTSPRFLPPTKID-------NCRIKDA 407
DP T + + T I IKD+
Sbjct: 245 RIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDS 304
Query: 408 IISHGCFLRECTV-EHSIVGERS------RLDYGVELKDTVMLGADYYQTESEIASLLAE 460
+I ++ +V E S VGE + RL G L V +G E + A++
Sbjct: 305 VIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGN---FVEVKKATIGKG 361
Query: 461 GKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
K G T + + I +NV IG + N D
Sbjct: 362 SK----AGHLTYLGDAEIGENVNIGAGTITCNYD 391
|
Length = 460 |
| >gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL GG G++L+PLT +PVA +I P+ +G + V+ +
Sbjct: 3 AVILAGGGGSRLYPLTDNIPKALLPVAN-KPMIWYPLDWLEKAGFEDVIVVVPEEEQAEI 61
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQF 202
R++ N D EV GTAD++R
Sbjct: 62 STYLRSFPLNLKQKLD---EVTIVLDED--------MGTADSLRHI 96
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214 |
| >gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 4e-04
Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 31/135 (22%)
Query: 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDYM-DFIQSHVDRDADITISCAAV 251
GT AV+Q A +V +L GD L + + +++H + AD+T+ A
Sbjct: 74 GTGHAVKQA----LPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTA-- 127
Query: 252 GESRASD---YGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM 308
D YG + D G++ + E + D + E K +
Sbjct: 128 ---ELEDPTGYGRIIRDGNGKVLRIVE----------EKDAT-------EEEKAIREVNA 167
Query: 309 GVYVFKKDVLFKLLR 323
G+Y F + LF+ L
Sbjct: 168 GIYAFDAEFLFEALP 182
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229 |
| >gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYR-LIDIPMSNCINSGINKIFV 146
A+IL G GT++ PLT P VPVAG + LID + +GI +I V
Sbjct: 2 AMILAAGLGTRMRPLTDTRPKPLVPVAG--KPLIDHALDRLAAAGIRRIVV 50
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221 |
| >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.004
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 467 VGRNTKIRNCIIDKNVKIGKDVVIVN 492
+G T I+N +I +N KIGK+VVI N
Sbjct: 8 IGEGTTIKNSVIGRNCKIGKNVVIDN 33
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 498 | |||
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 100.0 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 100.0 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 100.0 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 100.0 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 100.0 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 100.0 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 100.0 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 100.0 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 100.0 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 100.0 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 100.0 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 100.0 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 100.0 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 100.0 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 100.0 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 100.0 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 100.0 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 100.0 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 100.0 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 100.0 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 100.0 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 100.0 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 100.0 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 100.0 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 100.0 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 100.0 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 100.0 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 100.0 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 100.0 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 100.0 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 99.98 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 99.97 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.97 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 99.97 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 99.97 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.95 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 99.95 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.95 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 99.94 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 99.93 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.91 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.91 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 99.9 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.88 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 99.84 | |
| COG4750 | 231 | LicC CTP:phosphocholine cytidylyltransferase invol | 99.82 | |
| PLN02917 | 293 | CMP-KDO synthetase | 99.79 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 99.79 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.63 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.63 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 99.6 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 99.58 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 99.57 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 99.56 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 99.56 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.53 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 99.53 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 99.52 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.52 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 99.43 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.42 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 99.41 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 99.4 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.39 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 99.33 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 99.33 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.33 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 99.3 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 99.28 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 99.26 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.26 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.24 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 99.22 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.2 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 99.19 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 99.17 | |
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.17 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 99.15 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 99.13 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 99.1 | |
| PRK14490 | 369 | putative bifunctional molybdopterin-guanine dinucl | 99.09 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.08 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 99.07 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.06 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 99.06 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.06 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.05 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 99.05 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 99.01 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.01 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 99.0 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 98.98 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.98 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 98.96 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 98.91 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.9 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 98.9 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 98.89 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 98.89 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 98.88 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.87 | |
| PRK14500 | 346 | putative bifunctional molybdopterin-guanine dinucl | 98.87 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 98.83 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 98.82 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 98.81 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 98.81 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.8 | |
| PLN02472 | 246 | uncharacterized protein | 98.8 | |
| PLN02296 | 269 | carbonate dehydratase | 98.79 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.79 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.78 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 98.77 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 98.77 | |
| COG1083 | 228 | NeuA CMP-N-acetylneuraminic acid synthetase [Cell | 98.77 | |
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 98.76 | |
| PLN02296 | 269 | carbonate dehydratase | 98.76 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.75 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 98.75 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.74 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 98.74 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.73 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 98.73 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 98.73 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 98.73 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 98.72 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 98.71 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 98.7 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.7 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 98.68 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 98.67 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 98.67 | |
| PLN02472 | 246 | uncharacterized protein | 98.67 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 98.66 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.66 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 98.65 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.65 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.64 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.63 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.62 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 98.61 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 98.61 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.6 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.6 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.6 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 98.6 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.59 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 98.58 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 98.57 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.54 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 98.54 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 98.53 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.53 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.51 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 98.49 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.49 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.48 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 98.48 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 98.48 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.47 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 98.44 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 98.44 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.43 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 98.43 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.41 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.38 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.38 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.35 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 98.34 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 98.32 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 98.32 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.31 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 98.31 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.3 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 98.28 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.28 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.27 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 98.26 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.26 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.24 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.24 | |
| cd00897 | 300 | UGPase_euk Eukaryotic UGPase catalyses the synthes | 98.24 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.23 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 98.21 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.2 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.19 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 98.18 | |
| PF02348 | 217 | CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 | 98.16 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.15 | |
| PLN02357 | 360 | serine acetyltransferase | 98.14 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.13 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 98.12 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.12 | |
| PF01704 | 420 | UDPGP: UTP--glucose-1-phosphate uridylyltransferas | 98.1 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.1 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.07 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.07 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.07 | |
| PLN02435 | 493 | probable UDP-N-acetylglucosamine pyrophosphorylase | 98.06 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.05 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 98.03 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.03 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 97.98 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 97.97 | |
| PLN02830 | 615 | UDP-sugar pyrophosphorylase | 97.97 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 97.95 | |
| PLN02739 | 355 | serine acetyltransferase | 97.92 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 97.91 | |
| COG1861 | 241 | SpsF Spore coat polysaccharide biosynthesis protei | 97.87 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 97.87 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 97.87 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 97.87 | |
| PLN02357 | 360 | serine acetyltransferase | 97.86 | |
| cd06424 | 315 | UGGPase UGGPase catalyzes the synthesis of UDP-Glu | 97.85 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 97.84 | |
| PLN02694 | 294 | serine O-acetyltransferase | 97.82 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 97.82 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 97.8 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 97.77 | |
| PRK00576 | 178 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.77 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 97.69 | |
| PLN02739 | 355 | serine acetyltransferase | 97.67 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 97.54 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 97.53 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 97.49 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 97.47 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 97.43 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 97.43 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 97.3 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 97.21 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 97.2 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 97.19 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 97.13 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 97.11 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 97.03 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 96.92 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 96.9 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 96.87 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 96.82 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 96.77 | |
| KOG2638 | 498 | consensus UDP-glucose pyrophosphorylase [Carbohydr | 96.72 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 96.65 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 96.27 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 96.17 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 96.08 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 95.72 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 95.22 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 95.07 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 94.98 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 94.63 | |
| TIGR03552 | 195 | F420_cofC 2-phospho-L-lactate guanylyltransferase | 94.61 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 94.29 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 92.91 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 91.7 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 81.51 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 80.38 |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-74 Score=579.50 Aligned_cols=355 Identities=43% Similarity=0.760 Sum_probs=328.4
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~~~~~ 170 (498)
++++-|+|||||.|+||.|||..||||.+|+||+|+|||++|+||.++||++|+|+|+|++.+|.+||.+.| |+.+..
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~- 81 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRK- 81 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccc-
Confidence 567889999999999999999999999999999999999999999999999999999999999999999888 755432
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
.+++.++++.|. +.++.|++|||+|++|.++++++ ...+++||++||++|++||.++++.|+++++++|+++.+
T Consensus 82 -~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~ 155 (393)
T COG0448 82 -NGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKE 155 (393)
T ss_pred -cCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEE
Confidence 356899987765 23457999999999999999984 467899999999999999999999999999999999999
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCc-cccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC--
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSG-ANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~-- 327 (498)
++.+++++||++.+|++|||++|.|||.. +. ...+++||+|+|++++|.++|++...
T Consensus 156 Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~--------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~ 215 (393)
T COG0448 156 VPREEASRFGVMNVDENGRIIEFVEKPADGPP--------------------SNSLASMGIYIFNTDLLKELLEEDAKDP 215 (393)
T ss_pred CChHhhhhcCceEECCCCCEEeeeeccCcCCc--------------------ccceeeeeeEEEcHHHHHHHHHHHhccc
Confidence 99999999999999999999999999987 21 12389999999999999999987543
Q ss_pred -CCCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEe-cCeeee
Q 010874 328 -TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI-DNCRIK 405 (498)
Q Consensus 328 -~~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~~I~ 405 (498)
+..||+.++||.+++++.+++|+|+|||.||||+++|++||++|++..|.+.+|+++|+|++.....||+++ .++.+.
T Consensus 216 ~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~ 295 (393)
T COG0448 216 NSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVS 295 (393)
T ss_pred CccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEe
Confidence 467999999999999999999999999999999999999999999977889999999999999999999998 567789
Q ss_pred ceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEEC
Q 010874 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (498)
Q Consensus 406 ~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig 485 (498)
+|.|+.||+|.+ +|+||+|+.+++|+.+|.|++|+||++ |.||+||+|++|||++||+|+
T Consensus 296 nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~ 355 (393)
T COG0448 296 NSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIG 355 (393)
T ss_pred eeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeC
Confidence 999999999988 999999999999999999999999999 999999999999999999999
Q ss_pred CCcEEeCC
Q 010874 486 KDVVIVNK 493 (498)
Q Consensus 486 ~~~~i~~~ 493 (498)
+|++|.+.
T Consensus 356 ~g~~i~~~ 363 (393)
T COG0448 356 EGVVIGGD 363 (393)
T ss_pred CCcEEcCC
Confidence 99999998
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-71 Score=538.29 Aligned_cols=346 Identities=42% Similarity=0.674 Sum_probs=308.0
Q ss_pred cCCCCCCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCC
Q 010874 87 RRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGN 166 (498)
Q Consensus 87 ~~~~~~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~ 166 (498)
..+++ +.|+|+||.||.||||+|||.++||||+|+||+ |||+|+|++|.++||++|++.++|+++++++|+.+.|
T Consensus 3 ~~~~~-~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y--- 77 (371)
T KOG1322|consen 3 TRPAD-QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY--- 77 (371)
T ss_pred ccccc-cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh---
Confidence 44566 899999999999999999999999999999987 9999999999999999999999999999999999988
Q ss_pred CCcCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEE
Q 010874 167 GTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITI 246 (498)
Q Consensus 167 ~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv 246 (498)
+.++| |+++.+.|++ +.|++||++++|+.+|.+++ .+|+||+||++|++||++|+|+|+++++++|+
T Consensus 78 ~~~lg---Vei~~s~ete----plgtaGpl~laR~~L~~~~~------~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI 144 (371)
T KOG1322|consen 78 GKELG---VEILASTETE----PLGTAGPLALARDFLWVFED------APFFVLNSDVICRMPYKEMVQFHRAHGAEITI 144 (371)
T ss_pred hhccc---eEEEEEeccC----CCcccchHHHHHHHhhhcCC------CcEEEecCCeeecCCHHHHHHHHHhcCCceEE
Confidence 33565 8999988865 68999999999999998862 48999999999999999999999999999999
Q ss_pred EEEecCCCCCCCceEEEECC-CCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhh
Q 010874 247 SCAAVGESRASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (498)
Q Consensus 247 ~~~~~~~~~~~~~g~v~~d~-~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~ 325 (498)
++.++++ +++||+|++|+ +|+|.+|.|||++.. ++-.++|+|+|++++|.+++ .
T Consensus 145 ~~t~vde--pSkyGvv~~d~~~grV~~F~EKPkd~v---------------------snkinaGiYi~~~~vL~ri~--~ 199 (371)
T KOG1322|consen 145 VVTKVDE--PSKYGVVVIDEDTGRVIRFVEKPKDLV---------------------SNKINAGIYILNPEVLDRIL--L 199 (371)
T ss_pred EEEeccC--ccccceEEEecCCCceeEehhCchhhh---------------------hccccceEEEECHHHHhHhh--h
Confidence 9999998 89999999998 999999999999542 24467999999999999886 4
Q ss_pred CCCCCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEecCeeee
Q 010874 326 YPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIK 405 (498)
Q Consensus 326 ~~~~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~ 405 (498)
+|+. |.+|++|.+++++++++|.++|||+|||+|+||+.+- .+|+.+.+.++++++.||+.+.++++.
T Consensus 200 ~ptS--iekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~----------~~Yl~s~~~~t~~r~~p~~~i~~nvlv 267 (371)
T KOG1322|consen 200 RPTS--IEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGF----------SFYLRSLPKYTSPRLLPGSKIVGNVLV 267 (371)
T ss_pred cccc--hhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHH----------HHHHhhCcccCCccccCCccccccEee
Confidence 4554 8899999999999999999999999999999999994 455556677889999999999999998
Q ss_pred ceEEcCCCEECceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEE
Q 010874 406 DAIISHGCFLRECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 484 (498)
Q Consensus 406 ~s~Ig~~~~I~~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~I 484 (498)
|++++.| ++|.|. ||+||++|+|+.|++|++|+||++++|++++++++++.++++ .||.++ +|+++++|
T Consensus 268 d~~~~iG---~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~--~IG~~~-----~id~~a~l 337 (371)
T KOG1322|consen 268 DSIASIG---ENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNV--PIGIWA-----RIDKNAVL 337 (371)
T ss_pred ccccccC---CccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccc--cccCce-----EEecccEe
Confidence 8766554 455554 389999999999999999999999999999999999999984 455544 88899999
Q ss_pred CCCcEEeCCCCCC
Q 010874 485 GKDVVIVNKDESP 497 (498)
Q Consensus 485 g~~~~i~~~~~v~ 497 (498)
|+||+|.|.+.++
T Consensus 338 G~nV~V~d~~~vn 350 (371)
T KOG1322|consen 338 GKNVIVADEDYVN 350 (371)
T ss_pred ccceEEecccccc
Confidence 9999999998874
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=533.19 Aligned_cols=404 Identities=76% Similarity=1.278 Sum_probs=350.2
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~~~~~ 170 (498)
|++|+|||||||+||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.| |+.+..+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 678999999999999999999999999999999889999999999999999999999999999999998666 4433344
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
....+.++...|... .+.|++||++|++++++++++...++.++|||++||++++.|+.++++.|+++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~~--~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTPG--EKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccCC--CCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 434466666555321 234679999999999988864211225899999999999999999999999999999999998
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCC
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~ 330 (498)
++.+++++||++.+|++++|.+|.|||..+....+++++++|++++...+..++++++|+|+|++++|..+++..++...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 87666789999999989999999999977666678999999998886555556899999999999999878776655555
Q ss_pred chhhhhHHHHhhc-CceEEEEEcceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEecCeeeeceEE
Q 010874 331 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAII 409 (498)
Q Consensus 331 df~~dii~~~i~~-~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~~s~I 409 (498)
+|..++++.++++ .++++|.+++||.|||+|++|++|+++++...+...++++.+++++..+..+|+.+.+++|.+|+|
T Consensus 239 ~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred chhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 7889999999987 689999999999999999999999999998777666777788888988888999998899999999
Q ss_pred cCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcE
Q 010874 410 SHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVV 489 (498)
Q Consensus 410 g~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~ 489 (498)
+++|+|+++.|++|+||++|+||++|+|.+|++|+.++|+.......+...+.+++.||++|+|++++|++++.||++++
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 99999998899999999999999999999999999877776655555566676567999999999999999999999999
Q ss_pred EeCCCCCC
Q 010874 490 IVNKDESP 497 (498)
Q Consensus 490 i~~~~~v~ 497 (498)
|.+.+|++
T Consensus 399 i~~~~~~~ 406 (436)
T PLN02241 399 IINKDGVQ 406 (436)
T ss_pred EecccccC
Confidence 99999875
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-61 Score=504.97 Aligned_cols=398 Identities=58% Similarity=1.005 Sum_probs=339.2
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
|++++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.|.-. .+.
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~--~~~ 78 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD--GFS 78 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc--ccC
Confidence 568999999999999999999999999999999989999999999999999999999999999999997544111 122
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEec
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
.+.+.++...|... ...|++|||+||+++++++++ ...++|||++||++++.|+.++++.|++.++++|+++.+.
T Consensus 79 ~g~~~i~~~~~~~~--~~~~~lGTa~al~~a~~~l~~---~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~ 153 (429)
T PRK02862 79 GGFVEVLAAQQTPE--NPSWFQGTADAVRKYLWHFQE---WDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPV 153 (429)
T ss_pred CCEEEEeCCcccCC--CCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEec
Confidence 23355555444321 123558999999999998862 1237899999999999999999999999999999999877
Q ss_pred CCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCc
Q 010874 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~d 331 (498)
+.++++.||++.+|++|+|..|.|||.......+.+++++|...+.......+++++|+|+|++++|..+++.. +...+
T Consensus 154 ~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~~ 232 (429)
T PRK02862 154 DEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYTD 232 (429)
T ss_pred ChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChhh
Confidence 65557789999999899999999999865556678888888777666555667999999999999998777653 23346
Q ss_pred hhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhh-ccCCCccccCCCCCCCCCCccCCCeEecCeeeeceEEc
Q 010874 332 FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT-KESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIIS 410 (498)
Q Consensus 332 f~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll-~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~~s~Ig 410 (498)
+..++++.+++++++++|.+++||.|||||++|++||+.++ ...|..+.+.+.+++++.+.+.+|+.+.+++|++++||
T Consensus 233 ~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig 312 (429)
T PRK02862 233 FGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIA 312 (429)
T ss_pred hHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEEC
Confidence 77899999998899999999999999999999999999999 54566667778889999999999999988999999999
Q ss_pred CCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEE
Q 010874 411 HGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI 490 (498)
Q Consensus 411 ~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i 490 (498)
++|.|.++.|.+|+||++|+||++|+|.+|++|+.++|........++..+.+++.||++|.|++|+|++++.||+++++
T Consensus 313 ~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~ 392 (429)
T PRK02862 313 EGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRI 392 (429)
T ss_pred CCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEE
Confidence 99999888999999999999999999999999998877776665566667777799999999999999999999999999
Q ss_pred eCCCCCC
Q 010874 491 VNKDESP 497 (498)
Q Consensus 491 ~~~~~v~ 497 (498)
.|.+.|+
T Consensus 393 ~~~~~~~ 399 (429)
T PRK02862 393 VNKDNVE 399 (429)
T ss_pred ecCCCcc
Confidence 9988653
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-57 Score=473.79 Aligned_cols=361 Identities=37% Similarity=0.653 Sum_probs=298.5
Q ss_pred CCCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcC
Q 010874 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~ 170 (498)
.|++|+|||||||.||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.| ... ..
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~-~~~-~~ 79 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTW-RLS-GL 79 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCc-Ccc-cc
Confidence 4788999999999999999999999999999999989999999999999999999999999999999997443 110 11
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
....+..+...+. .+..|++|||+||+++++++.+ ...++|+|++||++++.|+.++++.|+++++++|+++..
T Consensus 80 ~~~~~~~~~~~~~---~~~~~~lGta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~ 153 (407)
T PRK00844 80 LGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIED---EDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIR 153 (407)
T ss_pred CCCeEEECCcccC---CCCCcccCCHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEe
Confidence 1112222111111 1235678999999999999863 122569999999999999999999999999999999877
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhC---C
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~---~ 327 (498)
++.+.++.||++.+|++|+|..|.|||..+... .. ...++++++|+|+|++++|.++++... .
T Consensus 154 ~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~--~~------------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 219 (407)
T PRK00844 154 VPREEASAFGVIEVDPDGRIRGFLEKPADPPGL--PD------------DPDEALASMGNYVFTTDALVDALRRDAADED 219 (407)
T ss_pred cchHHcccCCEEEECCCCCEEEEEECCCCcccc--cC------------CCCCcEEEeEEEEEeHHHHHHHHHHhhcCCc
Confidence 654456789999999889999999998753210 00 012368999999999999877666422 1
Q ss_pred CCCchhhhhHHHHhhcCceEEEEE------------cceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCC
Q 010874 328 TSNDFGSEIIPAAIMEHDVQAYIF------------RDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLP 395 (498)
Q Consensus 328 ~~~df~~dii~~~i~~~~I~~~~~------------~~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~ 395 (498)
...++.+++++.+++++++++|.+ ++||.||||+++|++||+.++++.+...++++..++++.....+
T Consensus 220 ~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~ 299 (407)
T PRK00844 220 SSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLP 299 (407)
T ss_pred ccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCC
Confidence 235677899999999999999977 59999999999999999999987766666677778888777778
Q ss_pred CeEe-cCe----eeeceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCC
Q 010874 396 PTKI-DNC----RIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (498)
Q Consensus 396 ~~~i-~~~----~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~ 470 (498)
|+.+ .++ .+.+++||++|.|++++|++|+||++|+|+++|+|++|+||++ +.||++
T Consensus 300 ~~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~ 360 (407)
T PRK00844 300 PAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRG 360 (407)
T ss_pred CceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCC
Confidence 8776 332 5679999999999989999999999999999999999999999 999999
Q ss_pred cEEeeeEECCCCEECCCcEEeC
Q 010874 471 TKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 471 ~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
|+|.+|+|++++.||+++++.+
T Consensus 361 ~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 361 AVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred CEEEeeEECCCCEECCCCEECC
Confidence 9999999999999999999987
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=465.76 Aligned_cols=356 Identities=37% Similarity=0.639 Sum_probs=301.1
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~~~~~ 170 (498)
|++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.. |+....
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~- 79 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRI- 79 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCC-
Confidence 678999999999999999999999999999999988999999999999999999999999999999986321 221111
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
...+.++...+.. ..+.|++||++||+++++++++ ...++|||++||++++.|+.++++.|++.++++|+++..
T Consensus 80 -~~~~~i~~~~~~~--~~~~~~~Gta~al~~a~~~l~~---~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~ 153 (380)
T PRK05293 80 -NGGVTILPPYSES--EGGKWYKGTAHAIYQNIDYIDQ---YDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIE 153 (380)
T ss_pred -CCCEEEeCCcccC--CCCcccCCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEE
Confidence 1235555322221 1235778999999999998852 123689999999999999999999999999999988877
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhC---C
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~---~ 327 (498)
.+.+++..||++.+|++|+|..|.|||..+. .+++++|+|+|++++|..+++... .
T Consensus 154 ~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 212 (380)
T PRK05293 154 VPWEEASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPN 212 (380)
T ss_pred cchhhccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCC
Confidence 6544577899999998899999999986432 367899999999999977776532 1
Q ss_pred CCCchhhhhHHHHhhc-CceEEEEEcceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEe-cCeeee
Q 010874 328 TSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI-DNCRIK 405 (498)
Q Consensus 328 ~~~df~~dii~~~i~~-~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~~I~ 405 (498)
...+|.+++++.++++ .++++|.+++||.||||+++|++||+.++...+...++++...+.+.+.+.+|++| .+++|.
T Consensus 213 ~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 292 (380)
T PRK05293 213 SSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVK 292 (380)
T ss_pred chhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEe
Confidence 2346778999999876 67999999999999999999999999999877766777888888888889999999 468899
Q ss_pred ceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEEC
Q 010874 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (498)
Q Consensus 406 ~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig 485 (498)
+++||+||+|++ .|.+|+||++|+||++|+|++|+++++ +.||++|+|.+|+|+++++|+
T Consensus 293 ~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~i~ 352 (380)
T PRK05293 293 NSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAVIG 352 (380)
T ss_pred cCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCEEC
Confidence 999999999974 588999999999999999999999999 899999999999999999999
Q ss_pred CCcEEeCCCC
Q 010874 486 KDVVIVNKDE 495 (498)
Q Consensus 486 ~~~~i~~~~~ 495 (498)
+++.+.+...
T Consensus 353 ~~~~i~~~~~ 362 (380)
T PRK05293 353 DGVIIGGGKE 362 (380)
T ss_pred CCCEEcCCCc
Confidence 9999988543
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-56 Score=467.21 Aligned_cols=363 Identities=38% Similarity=0.662 Sum_probs=302.6
Q ss_pred CCCCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCC-CC
Q 010874 90 VDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGN-GT 168 (498)
Q Consensus 90 ~~~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~-~~ 168 (498)
-.+++++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.| +. ..
T Consensus 11 ~~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~-~~~~~ 89 (425)
T PRK00725 11 QLTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGW-SFFRE 89 (425)
T ss_pred hhhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhh-ccccc
Confidence 34578999999999999999999999999999999955999999999999999999999999999999997543 11 00
Q ss_pred cCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEE
Q 010874 169 NFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISC 248 (498)
Q Consensus 169 ~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~ 248 (498)
+. ...+.++...|.. ..+.|++|||+|++++++++++ ...++|+|++||++++.||.++++.|+++++++|+++
T Consensus 90 ~~-~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~---~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~ 163 (425)
T PRK00725 90 EL-GEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRR---YDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVAC 163 (425)
T ss_pred CC-CCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEE
Confidence 11 1245555544432 1234678999999999999862 1246899999999999999999999999999999998
Q ss_pred EecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhC--
Q 010874 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY-- 326 (498)
Q Consensus 249 ~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~-- 326 (498)
.+++.+++..||++.+|++++|..|.|||..+.. ++. ....+++++|+|+|++++|.++|++..
T Consensus 164 ~~~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~~------------~~~~~l~n~GIYi~~~~~L~~~L~~~~~~ 229 (425)
T PRK00725 164 LEVPREEASAFGVMAVDENDRITAFVEKPANPPA--MPG------------DPDKSLASMGIYVFNADYLYELLEEDAED 229 (425)
T ss_pred EecchhhcccceEEEECCCCCEEEEEECCCCccc--ccc------------CccceEEEeeEEEEeHHHHHHHHHHhhcC
Confidence 8775555778999999988999999999864320 000 002468999999999999877776532
Q ss_pred -CCCCchhhhhHHHHhhcCceEEEEEc-----------ceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccC
Q 010874 327 -PTSNDFGSEIIPAAIMEHDVQAYIFR-----------DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFL 394 (498)
Q Consensus 327 -~~~~df~~dii~~~i~~~~I~~~~~~-----------~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~ 394 (498)
....+|.+++++.+++++++++|.++ +||.|||||++|++||++++...+...+++...++++.....
T Consensus 230 ~~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~ 309 (425)
T PRK00725 230 PNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQL 309 (425)
T ss_pred CCccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCC
Confidence 23457788999999999999999996 599999999999999999998777666777777888877788
Q ss_pred CCeEec----C--eeeeceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeC
Q 010874 395 PPTKID----N--CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG 468 (498)
Q Consensus 395 ~~~~i~----~--~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig 468 (498)
||+.+- + +.+.+|+||+||+|++|.|++|+||++|+||++|+|++|+||++ +.||
T Consensus 310 ~~~~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~ 370 (425)
T PRK00725 310 PPAKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVG 370 (425)
T ss_pred CCCeEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEEC
Confidence 887652 2 45779999999999989999999999999999999999999999 9999
Q ss_pred CCcEEeeeEECCCCEECCCcEEeC
Q 010874 469 RNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 469 ~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
++|+|.+|+|+++++|+++++|..
T Consensus 371 ~~~~i~~~ii~~~~~i~~~~~i~~ 394 (425)
T PRK00725 371 RSCRLRRCVIDRGCVIPEGMVIGE 394 (425)
T ss_pred CCCEEeeEEECCCCEECCCCEECC
Confidence 999999999999999999999963
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=441.89 Aligned_cols=352 Identities=24% Similarity=0.414 Sum_probs=279.3
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCch-hHHHHHHhhc-cCCCCcC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA-SLNRHIARTY-FGNGTNF 170 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~-~l~~hl~~~~-~~~~~~~ 170 (498)
++|+|||||||+||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+ ++.+|+.+.. |+.....
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~ 80 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR 80 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc
Confidence 3689999999999999999999999999999998899999999999999999999999987 9999996422 3221111
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
. +...++ .|... .+-.|++++++.+++++++ ...++|||++||++++.||.+++++|+++++++|+++.+
T Consensus 81 ~-~~~~~~--~~e~~----~l~tg~~~a~~~a~~~l~~---~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 150 (369)
T TIGR02092 81 D-GLFVFP--YNDRD----DLSEGGKRYFSQNLEFLKR---STSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKK 150 (369)
T ss_pred C-cEEEEe--ccCCC----CcccChHHHHHHHHHHHHh---CCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEe
Confidence 1 111112 12211 1224777789888888742 123789999999999999999999999999999999988
Q ss_pred cCCCCCCCc-eEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC-
Q 010874 251 VGESRASDY-GLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (498)
Q Consensus 251 ~~~~~~~~~-g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~- 328 (498)
++.+.+..| +++..+++|+|..+.+++... ....+++|+|+|++++|.++++...+.
T Consensus 151 v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~---------------------~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 209 (369)
T TIGR02092 151 VKPADASEYDTILRFDESGKVKSIGQNLNPE---------------------EEENISLDIYIVSTDLLIELLYECIQRG 209 (369)
T ss_pred cCHHHccccCcEEEEcCCCCEEeccccCCCC---------------------CcceeeeeEEEEEHHHHHHHHHHHhhcC
Confidence 764345667 456677778888875433221 124578999999999887776654332
Q ss_pred CCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccCCCcccc-CCCCCCCCCCccCCCeEe-cCeeeec
Q 010874 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFY-DPKTPFYTSPRFLPPTKI-DNCRIKD 406 (498)
Q Consensus 329 ~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~~~~-~~~~~i~~~~~i~~~~~i-~~~~I~~ 406 (498)
..++..++++.++++.++++|.+++||.|||||++|++||+++++++.....+ ....++++...+.+|++| .+++|.+
T Consensus 210 ~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~ 289 (369)
T TIGR02092 210 KLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVEN 289 (369)
T ss_pred ccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEE
Confidence 23456688998888889999999999999999999999999999876432222 223345555556689999 5689999
Q ss_pred eEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECC
Q 010874 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (498)
Q Consensus 407 s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~ 486 (498)
|+||+||.|+ +.|++|+||++|+|+++|+|++|+++++ +.|++++.+.+|+||++++||+
T Consensus 290 ~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~ 349 (369)
T TIGR02092 290 SLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEP 349 (369)
T ss_pred eEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECC
Confidence 9999999997 5799999999999999999999999999 9999999999999999999999
Q ss_pred CcEEeCCCC
Q 010874 487 DVVIVNKDE 495 (498)
Q Consensus 487 ~~~i~~~~~ 495 (498)
++.+.+...
T Consensus 350 ~~~~~~~~~ 358 (369)
T TIGR02092 350 NVKIAGTSE 358 (369)
T ss_pred CCEeCCCCC
Confidence 999987643
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-52 Score=432.11 Aligned_cols=356 Identities=49% Similarity=0.837 Sum_probs=289.7
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
|||||||.||||+|||.++||||+||+|+||||+|++++|.++|+++|+|+++++.+++.+|+.+.| +..... ...++
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~-~~~~~~-~~~~~ 78 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGW-DFDGFI-DGFVT 78 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhcc-CccCcc-CCCEE
Confidence 6999999999999999999999999999977999999999999999999999999999999997543 211000 12355
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCCCC
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (498)
++...+.. ..+.|++||+++++.+.+++++ ...++|+|++||++++.++.++++.|+++++++|+++.+.+.+.+
T Consensus 79 ~~~~~~~~--~~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~ 153 (361)
T TIGR02091 79 LLPAQQRE--SGTDWYQGTADAVYQNLDLIED---YDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEA 153 (361)
T ss_pred EeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhc
Confidence 55433321 2235678999999999988852 124689999999999999999999999888888998887765556
Q ss_pred CCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhC---CCCCchh
Q 010874 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PTSNDFG 333 (498)
Q Consensus 257 ~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~---~~~~df~ 333 (498)
..||++.+|++++|..|.|||..+... .+. ...+++++|+|+|++++|..+++... ....+|.
T Consensus 154 ~~~g~v~~d~~~~v~~~~ekp~~~~~~--------~~~------~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~ 219 (361)
T TIGR02091 154 SRFGVMQVDEDGRIVDFEEKPANPPSI--------PGM------PDFALASMGIYIFDKDVLKELLEEDADDPESSHDFG 219 (361)
T ss_pred ccccEEEECCCCCEEEEEECCCCcccc--------ccc------ccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccH
Confidence 789999999889999999998644210 000 01248999999999999876766532 1234677
Q ss_pred hhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCC-CCccCCCeEecC-eeeeceEEcC
Q 010874 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYT-SPRFLPPTKIDN-CRIKDAIISH 411 (498)
Q Consensus 334 ~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~-~~~i~~~~~i~~-~~I~~s~Ig~ 411 (498)
+++++.+++++++++|.+++||.||||+++|++|+++++++.+....+....++.+ ...+.+++++.+ +.|.+|+||+
T Consensus 220 ~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~ 299 (361)
T TIGR02091 220 KDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSE 299 (361)
T ss_pred HHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEECC
Confidence 89999999999999999999999999999999999999987654444444444433 235566777754 5888999999
Q ss_pred CCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEe
Q 010874 412 GCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 412 ~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~ 491 (498)
+|+|+++.|.+|+||++|+|+++|+|.+|+++++ +.||++++|++|+||++++|+++++|.
T Consensus 300 ~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 300 GCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred CCEECCCEEEccEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEeC
Confidence 9999966899999999999999999999999998 899999999999999999999999997
Q ss_pred C
Q 010874 492 N 492 (498)
Q Consensus 492 ~ 492 (498)
|
T Consensus 361 ~ 361 (361)
T TIGR02091 361 N 361 (361)
T ss_pred C
Confidence 6
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-51 Score=417.98 Aligned_cols=319 Identities=26% Similarity=0.458 Sum_probs=244.6
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
.|+|||||||.||||+|||.++||||+||+|+ |||+|+|++|.+.|+++|+|+++|..+++.+|+...+ .++ .
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~-----~~~-~ 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGE-----GLG-V 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhccc-----ccC-C
Confidence 48999999999999999999999999999999 9999999999999999999999999999988886422 222 1
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCC
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (498)
.+.++.... ++|||++|+++.+++. .++|++++||++++.|+.+++++|+++.+.+|+....+.+
T Consensus 74 ~I~y~~e~~---------~lGTag~l~~a~~~l~------~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~ 138 (358)
T COG1208 74 RITYVVEKE---------PLGTAGALKNALDLLG------GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLD 138 (358)
T ss_pred ceEEEecCC---------cCccHHHHHHHHHhcC------CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCC
Confidence 244443222 3799999999998874 2899999999999999999999999998888988888877
Q ss_pred CCCCCceEEEECCC-CCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCch
Q 010874 254 SRASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (498)
Q Consensus 254 ~~~~~~g~v~~d~~-grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df 332 (498)
+ +.||++..+++ ++|.+|.|||..... .++++++|+|+|++++|. +++. ....+|
T Consensus 139 ~--~~~Gvv~~~~~~~~v~~f~ekp~~~~~-------------------~~~~in~Giyi~~~~v~~-~i~~--~~~~~~ 194 (358)
T COG1208 139 P--SEFGVVETDDGDGRVVEFREKPGPEEP-------------------PSNLINAGIYIFDPEVFD-YIEK--GERFDF 194 (358)
T ss_pred C--CcCceEEecCCCceEEEEEecCCCCCC-------------------CCceEEeEEEEECHHHhh-hccc--CCcccc
Confidence 4 78999998844 699999999953110 247999999999999997 3222 234567
Q ss_pred hhhhHHHHhhcCc-eEEEEEcceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCc-cCCCeEecCeeeeceEEc
Q 010874 333 GSEIIPAAIMEHD-VQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPR-FLPPTKIDNCRIKDAIIS 410 (498)
Q Consensus 333 ~~dii~~~i~~~~-I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~-i~~~~~i~~~~I~~s~Ig 410 (498)
..++++.+++++. +++|.+++||.|||+|++|.+|+..+++....... ......+. +.. +++. ++.+||
T Consensus 195 ~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~-~~i~----gp~~ig 265 (358)
T COG1208 195 EEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPL----GPIEEPVVIIRS-AYII----GPVVIG 265 (358)
T ss_pred hhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccc----cccccccccccc-ceEe----CCEEEC
Confidence 7789999999987 99999999999999999999999999975432211 01101100 111 1111 255666
Q ss_pred CCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECC
Q 010874 411 HGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (498)
Q Consensus 411 ~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~ 486 (498)
.+|.|+ ++.|. +|+||++|+||++++|++|++|++ +.||++++|.+|||+.||+||+
T Consensus 266 ~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 266 PGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred CCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCcEECC
Confidence 666666 45553 567777777777777777777776 6777777777777777777665
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=392.26 Aligned_cols=328 Identities=20% Similarity=0.345 Sum_probs=255.3
Q ss_pred EEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEecc-CchhHHHHHHhhccCCCCcCCCCe
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQF-NSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~-~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
+|||||||.||||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|++++ +.+++.+|+.. +..|+. .
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~-----~~~~~~-~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE-----GERFGA-K 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc-----ccccCc-e
Confidence 589999999999999999999999999999 999999999999999999999999 88899888863 123331 1
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
+.++. +. +.+||+++++.++.+++ .++|+|++||++++.++.++++.|+++++++|+++.+.++
T Consensus 74 ~~~~~--~~-------~~~G~~~al~~a~~~l~------~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~- 137 (353)
T TIGR01208 74 ITYIV--QG-------EPLGLAHAVYTARDFLG------DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD- 137 (353)
T ss_pred EEEEE--CC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC-
Confidence 33332 21 23699999999998874 3689999999999999999999999999999999888765
Q ss_pred CCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC--CCch
Q 010874 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (498)
Q Consensus 255 ~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~--~~df 332 (498)
+..||++.++++++|..|.|||..+. +.++++|+|+|++.++. .++...+. .+.+
T Consensus 138 -~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~~ 194 (353)
T TIGR01208 138 -PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGELE 194 (353)
T ss_pred -hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcEE
Confidence 56799988876779999999987542 36789999999997665 44543331 2344
Q ss_pred hhhhHHHHhhc-CceEEEEEcceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEec-CeeeeceEEc
Q 010874 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCRIKDAIIS 410 (498)
Q Consensus 333 ~~dii~~~i~~-~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~-~~~I~~s~Ig 410 (498)
..++++.++++ .+|++|.+++||.|||||++|++||+.++++... .+. ++.+.+.+.+|++|+ +++|.+++|+
T Consensus 195 l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~-~~~----~i~~~~~i~~~~~i~~~~~i~~~~i~ 269 (353)
T TIGR01208 195 ITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVER-EVQ----GVDDESKIRGRVVVGEGAKIVNSVIR 269 (353)
T ss_pred HHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc-ccC----CcCCCCEEcCCEEECCCCEEeCCEEE
Confidence 67899999877 4799999999999999999999999999985321 111 245556666677763 4666666665
Q ss_pred CCCEEC-ceEEeccEECCCCEECCCCEE-----cceEEeCCccccchhHHHHhhcCCcccEEeCCC-cEEeeeEECCCCE
Q 010874 411 HGCFLR-ECTVEHSIVGERSRLDYGVEL-----KDTVMLGADYYQTESEIASLLAEGKVPIGVGRN-TKIRNCIIDKNVK 483 (498)
Q Consensus 411 ~~~~I~-~~~v~~siIg~~~~Ig~~~~i-----~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~-~~i~~~iI~~~~~ 483 (498)
.+|.|| +|.|.+|+|+++|+||++|+| .+|+++++ +.|+.+ +++.+|+|+++++
T Consensus 270 ~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~-------------------~~i~~~~~~~~~~ii~~~~~ 330 (353)
T TIGR01208 270 GPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDE-------------------SVIEGVQARIVDSVIGKKVR 330 (353)
T ss_pred CCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCC-------------------CEEcCCcceeecCEEcCCCE
Confidence 556665 555555555555555555555 56666666 788877 4888999999999
Q ss_pred ECCCcEEeCC
Q 010874 484 IGKDVVIVNK 493 (498)
Q Consensus 484 Ig~~~~i~~~ 493 (498)
|++++.+.+.
T Consensus 331 i~~~~~~~~~ 340 (353)
T TIGR01208 331 IKGNRRRPGD 340 (353)
T ss_pred ECCCcccccc
Confidence 9999887653
|
Alternate name: dTDP-D-glucose synthase |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=369.55 Aligned_cols=355 Identities=22% Similarity=0.311 Sum_probs=265.6
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
|++++|||||||.|+||++ .+||+|+|++|+ |||+|+|+++.++|+++|++++++..+++.+|+.+.
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~--------- 67 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD--------- 67 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC---------
Confidence 5678999999999999984 789999999999 999999999999999999999999998898887521
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
..+.++. |.. .+||+++++.+++++++ ..++|++++||+ +...++.++++.|.+.+++++++..
T Consensus 68 -~~i~~~~--~~~-------~~Gt~~al~~a~~~l~~----~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~ 133 (459)
T PRK14355 68 -GDVSFAL--QEE-------QLGTGHAVACAAPALDG----FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTA 133 (459)
T ss_pred -CceEEEe--cCC-------CCCHHHHHHHHHHHhhc----cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEE
Confidence 0144432 211 26999999999988852 246899999998 4567899999999888888888887
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC--
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~-- 327 (498)
+.++ +..||.+.+|++|+|..|.|||...... ..++++++|+|+|++++|.+.++...+
T Consensus 134 ~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 194 (459)
T PRK14355 134 RLEN--PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGNDN 194 (459)
T ss_pred EcCC--CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCccc
Confidence 7655 4579999999889999999987421100 013678999999999987666665332
Q ss_pred -CCCchhhhhHHHHhhcC-ceEEEEEcce--EeecCCHHHHHHHHHHhhccC------CCccccCCCC-CCCCCCccCCC
Q 010874 328 -TSNDFGSEIIPAAIMEH-DVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPKT-PFYTSPRFLPP 396 (498)
Q Consensus 328 -~~~df~~dii~~~i~~~-~I~~~~~~~~--w~dIgt~~dy~~An~~ll~~~------~~~~~~~~~~-~i~~~~~i~~~ 396 (498)
..+.+++++++.+++++ ++++|.+++| |+|++||++|++|++.++... ....++++.. .+...+.++++
T Consensus 195 ~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~ 274 (459)
T PRK14355 195 AQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRD 274 (459)
T ss_pred cCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCC
Confidence 13355789999999874 7999999987 999999999999988666432 1112444443 35555666666
Q ss_pred eEec-Ceeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHH--HHhhcCCcccEEeCC--
Q 010874 397 TKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPIGVGR-- 469 (498)
Q Consensus 397 ~~i~-~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~--~s~l~~~~~~v~Ig~-- 469 (498)
+.|. +|.|. +++||++|+|+ +++|.+|+||++|+|+++|.|.+++++++..++..+.+ .+.++++ +.||+
T Consensus 275 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~ 351 (459)
T PRK14355 275 TTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAH---VKIGNFV 351 (459)
T ss_pred CEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCC---CEECCCc
Confidence 6663 46664 68899999998 88888999999999999999998888887666654333 2223333 23322
Q ss_pred ---------C------cEEeeeEECCCCEECCCcEEeCCCC
Q 010874 470 ---------N------TKIRNCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 470 ---------~------~~i~~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
+ ++|.+++|++++.||+++++.|.++
T Consensus 352 ~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~ 392 (459)
T PRK14355 352 ETKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDG 392 (459)
T ss_pred cccCCEECCCceeeeeccccCCEECCCCEEccceeecCcCC
Confidence 2 2334567778888888877766544
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=349.17 Aligned_cols=355 Identities=21% Similarity=0.276 Sum_probs=282.5
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
.+.+||||||.||||+ +.+||.|.||+|+ ||++|+++.+...+.++|.+|++|..+++.+.+.+. .
T Consensus 2 ~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-------~--- 67 (460)
T COG1207 2 SLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-------D--- 67 (460)
T ss_pred CceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-------c---
Confidence 5789999999999999 5899999999999 999999999999999999999999999998877521 0
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCCeEEEEEec
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
.++++ .|.. .+|||+|+.+++++|.+ ...+++||++||+ |.. ..|.++++.|.+.++.++++....
T Consensus 68 ~v~~v--~Q~e-------qlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~ 135 (460)
T COG1207 68 DVEFV--LQEE-------QLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAEL 135 (460)
T ss_pred CceEE--Eecc-------cCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEc
Confidence 12222 2332 27999999999999932 1345799999999 554 457889999999999999999988
Q ss_pred CCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC---C
Q 010874 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 328 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~---~ 328 (498)
++ |..||.+..+++|+|..|.|....... +..-..+|+|+|+|+...|.++|..... .
T Consensus 136 ~d--P~GYGRIvr~~~g~V~~IVE~KDA~~e-----------------ek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaq 196 (460)
T COG1207 136 DD--PTGYGRIVRDGNGEVTAIVEEKDASEE-----------------EKQIKEINTGIYAFDGAALLRALPKLSNNNAQ 196 (460)
T ss_pred CC--CCCcceEEEcCCCcEEEEEEcCCCCHH-----------------HhcCcEEeeeEEEEcHHHHHHHHHHhcccccc
Confidence 87 789999999999999999885432211 1123679999999999988888876433 2
Q ss_pred CCchhhhhHHHHhhc-CceEEEEEcce--EeecCCHHHHHHHHHHhhccC-------------CCccccCCCCCCCCCCc
Q 010874 329 SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES-------------PAFHFYDPKTPFYTSPR 392 (498)
Q Consensus 329 ~~df~~dii~~~i~~-~~I~~~~~~~~--w~dIgt~~dy~~An~~ll~~~-------------~~~~~~~~~~~i~~~~~ 392 (498)
.+.|++|++..+..+ .+|.++..+++ ...+++-..+.+|++.|.++. |...+++.+..+...+.
T Consensus 197 gEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~Dvv 276 (460)
T COG1207 197 GEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVV 276 (460)
T ss_pred CcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceE
Confidence 567899999887755 67888888866 578999999999998876542 33334444455555566
Q ss_pred cCCCeEec-------------CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-HH
Q 010874 393 FLPPTKID-------------NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-AS 456 (498)
Q Consensus 393 i~~~~~i~-------------~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~s 456 (498)
|.|++.+. +|.|+||.||+||.|. .+.|++|.||++|.||+.++|+ ++.+..+.+++.++|+ .+
T Consensus 277 I~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a 356 (460)
T COG1207 277 IEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKA 356 (460)
T ss_pred EecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecc
Confidence 66644442 2555677788888887 3788888888899999999886 4555556888889888 78
Q ss_pred hhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCCCC
Q 010874 457 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDES 496 (498)
Q Consensus 457 ~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v 496 (498)
.+++| +++++-++|++|.||+++.||+|++.+|+||.
T Consensus 357 ~ig~g---sKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~ 393 (460)
T COG1207 357 TIGKG---SKAGHLTYLGDAEIGENVNIGAGTITCNYDGK 393 (460)
T ss_pred cccCC---ccccceeeeccceecCCceeccceEEEcCCCc
Confidence 89999 89999999999999999999999999999996
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=334.71 Aligned_cols=331 Identities=23% Similarity=0.353 Sum_probs=250.3
Q ss_pred ceEEEEEeCC--CCCcccCCccCCCccceecCCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHhhccCCCCcC
Q 010874 94 NVAAIILGGG--AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 94 ~m~aVILAaG--~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~-sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~ 170 (498)
+++||||.|| +|||||||+.+.||||+||+|+ |||+|.|+.|.+ +|..+|+++.-|..+.+.+++.+.- + .|
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~--~--e~ 76 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQ--Q--EF 76 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHH--h--hc
Confidence 5789999999 5999999999999999999999 999999999998 7999999999999888888886321 1 23
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
. -.|+++.++. ++|||+.|..+++.|- ....+.|+++++|+.+++++.+|++.|+..+..+|++...
T Consensus 77 ~-~pvrYL~E~~---------plGtaGgLyhFrdqIl---~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tk 143 (407)
T KOG1460|consen 77 K-VPVRYLREDN---------PLGTAGGLYHFRDQIL---AGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTK 143 (407)
T ss_pred c-cchhhhccCC---------CCCcccceeehhhHHh---cCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEE
Confidence 2 1255554433 4799999999987764 2356899999999999999999999999999999999999
Q ss_pred cCCCCCCCceEEEEC-CCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHH---hh-
Q 010874 251 VGESRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR---WR- 325 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d-~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~---~~- 325 (498)
+..+++++||.+..| .+|+|+++.|||.... ++++++|+|+|++++|..+-+ +.
T Consensus 144 vs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q~~ 202 (407)
T KOG1460|consen 144 VSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQRQ 202 (407)
T ss_pred ecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHHHH
Confidence 988889999999988 6899999999998753 589999999999999875422 11
Q ss_pred --------C----CCCCch---hhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccCCCcc--ccCCCCCCC
Q 010874 326 --------Y----PTSNDF---GSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFH--FYDPKTPFY 388 (498)
Q Consensus 326 --------~----~~~~df---~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~~--~~~~~~~i~ 388 (498)
. +...|| .+|++..++..+++|+|..+++|..|.|+.+-+.||+.+|++..... ... + .-.
T Consensus 203 ~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~La-k-~pg 280 (407)
T KOG1460|consen 203 DLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLA-K-GPG 280 (407)
T ss_pred hhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhc-C-CCC
Confidence 0 112344 36899999999999999999999999999999999999998542211 000 0 000
Q ss_pred CCCccCCCeEecCeeeeceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeC
Q 010874 389 TSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG 468 (498)
Q Consensus 389 ~~~~i~~~~~i~~~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig 468 (498)
+.+.|.++++|+. .+.+.+.+.|| -|..||.+++||+|++|.+|+|.++ +.|.
T Consensus 281 t~a~IigdVyIhP----sakvhptAkiG----PNVSIga~vrvg~GvRl~~sIIl~d-------------------~ei~ 333 (407)
T KOG1460|consen 281 TQAEIIGDVYIHP----SAKVHPTAKIG----PNVSIGANVRVGPGVRLRESIILDD-------------------AEIE 333 (407)
T ss_pred CCceEEeeeEEcC----cceeCCccccC----CCceecCCceecCCceeeeeeeccC-------------------cEee
Confidence 1112222222221 12233333333 1346677777777777777777777 7777
Q ss_pred CCcEEeeeEECCCCEECCCcEEeC
Q 010874 469 RNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 469 ~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
+|+.+-+||||.++.||.++.+.+
T Consensus 334 enavVl~sIigw~s~iGrWaRVe~ 357 (407)
T KOG1460|consen 334 ENAVVLHSIIGWKSSIGRWARVEG 357 (407)
T ss_pred ccceEEeeeecccccccceeeecc
Confidence 777777777777777777766654
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=354.49 Aligned_cols=359 Identities=18% Similarity=0.324 Sum_probs=257.4
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
...+|||+||..+-|||+|+|..+|++|+|++|. |||+|+|++|..+|+++|+|+|+-+..++++||.+.-|.....+-
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~ 100 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFI 100 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccce
Confidence 3558999999999999999999999999999999 999999999999999999999999999999999864344322221
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHH-----cCCCeEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD-----RDADITI 246 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~-----~~ad~tv 246 (498)
.+.+... . +...||++|.... ++...++|++++||++.+++|.++++.|++ +++.|||
T Consensus 101 --v~ti~s~-~---------~~S~GDamR~id~-----k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTm 163 (673)
T KOG1461|consen 101 --VVTICSG-E---------SRSVGDAMRDIDE-----KQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTM 163 (673)
T ss_pred --EEEEcCC-C---------cCcHHHHHHHHHh-----cceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEE
Confidence 1233321 1 3689999998742 344569999999999999999999999965 4677999
Q ss_pred EEEecCCCCCCCceEEEECC-CCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHh-
Q 010874 247 SCAAVGESRASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW- 324 (498)
Q Consensus 247 ~~~~~~~~~~~~~g~v~~d~-~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~- 324 (498)
++.+.......+-.++.+|. +.|+++|.+-.. .....+++.++|--.+ .+..+.++.+++|-+|+++++..|-++
T Consensus 164 v~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~--~~~~~~l~~sl~d~~~-~v~vr~DL~dc~IdIcS~~V~sLF~dNF 240 (673)
T KOG1461|consen 164 VFKESSTRETTEQVVIAVDSRTSRLLHYQKCVR--EKHDIQLDLSLFDSND-EVEVRNDLLDCQIDICSPEVLSLFTDNF 240 (673)
T ss_pred EEeccccccCCcceEEEEcCCcceEEeehhhcc--cccccccCHHHhcCCC-cEEEEccCCCceeeEecHhHHHHhhhcc
Confidence 98877421113344566664 679999975211 1224677777774443 345688999999999999999866554
Q ss_pred hCCCCCchhhhhHHHHhhcCceEEEEEcc--eEeecCCHHHHHHHHHHhhccC-----CCccccCCCCCCCC--CCccCC
Q 010874 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRD--YWEDIGTIKSFYEANMALTKES-----PAFHFYDPKTPFYT--SPRFLP 395 (498)
Q Consensus 325 ~~~~~~df~~dii~~~i~~~~I~~~~~~~--~w~dIgt~~dy~~An~~ll~~~-----~~~~~~~~~~~i~~--~~~i~~ 395 (498)
.|+++.||..++|-.-+-+.+|+++.... |...+.++.+|...++++++|| |+..+.+....-+. +.+-++
T Consensus 241 Dyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~ 320 (673)
T KOG1461|consen 241 DYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSP 320 (673)
T ss_pred cceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCc
Confidence 45677899999998888899999999975 9999999999999999999997 33333331110000 001112
Q ss_pred CeEec-Ceeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcE
Q 010874 396 PTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK 472 (498)
Q Consensus 396 ~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~ 472 (498)
.+.+. .|.+. +++||.++.|| ++.|.||+||.||+||.+|+|++|+||.+ |+||+||.
T Consensus 321 dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~Igdnc~ 381 (673)
T KOG1461|consen 321 DVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VTIGDNCR 381 (673)
T ss_pred cceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cEECCCce
Confidence 22221 23332 55666666666 56666666666666666666666666666 56666666
Q ss_pred EeeeEECCCCEECCCcEE
Q 010874 473 IRNCIIDKNVKIGKDVVI 490 (498)
Q Consensus 473 i~~~iI~~~~~Ig~~~~i 490 (498)
|++|+|+++|+|++|+++
T Consensus 382 I~~aii~d~v~i~~~~~l 399 (673)
T KOG1461|consen 382 IDHAIICDDVKIGEGAIL 399 (673)
T ss_pred EeeeEeecCcEeCCCccc
Confidence 666666666666655555
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=361.97 Aligned_cols=357 Identities=19% Similarity=0.227 Sum_probs=256.5
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
+..+.|||||||.|+||+| .+||+|+|++|+ |||+|+|++|.++|+++++|++++..+++.+++.. + .
T Consensus 2 ~~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~-~-------~ 69 (482)
T PRK14352 2 PRPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAE-L-------A 69 (482)
T ss_pred CCCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhc-c-------C
Confidence 4567899999999999997 689999999999 99999999999999999999999988888777742 1 1
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-e-eecCHHHHHHHHHHcCCCeEEEEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-L-YRMDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l-~~~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
..+.++. +. +..||+++++.++.++.+ ...++|+|++||+ + ...++.++++.|++.+++++++..
T Consensus 70 -~~~~~~~--~~-------~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~ 136 (482)
T PRK14352 70 -PEVDIAV--QD-------EQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTT 136 (482)
T ss_pred -CccEEEe--CC-------CCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 0133332 21 236999999999988742 1246799999998 3 456799999999988888888777
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC-
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~- 328 (498)
+.++ +..||.+..|++|+|.+|.|||.....+ ....++++|+|+|++++|..+++...+.
T Consensus 137 ~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~ 197 (482)
T PRK14352 137 TLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFDAAVLRSALARLSSDN 197 (482)
T ss_pred ecCC--CCCCCEEEECCCCCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEEHHHHHHHHHhhCccc
Confidence 7665 5679998888889999999998743210 0124689999999999998776654332
Q ss_pred --CCchhhhhHHHHhhcC-ceEEEEEcceEeecCCHHHH------HHHHHHhhccC---------CCccccCCCCCCCCC
Q 010874 329 --SNDFGSEIIPAAIMEH-DVQAYIFRDYWEDIGTIKSF------YEANMALTKES---------PAFHFYDPKTPFYTS 390 (498)
Q Consensus 329 --~~df~~dii~~~i~~~-~I~~~~~~~~w~dIgt~~dy------~~An~~ll~~~---------~~~~~~~~~~~i~~~ 390 (498)
.+.+++|+++.+++++ +|++|.+++||.|+++++.| ..+++.++..+ |...++++...+.++
T Consensus 198 ~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~ 277 (482)
T PRK14352 198 AQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRD 277 (482)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCC
Confidence 3456789999999874 79999999999999999888 55666555442 111122232333333
Q ss_pred CccCCCe------------Eec-CeeeeceEEcCCCEECceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-H
Q 010874 391 PRFLPPT------------KID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-A 455 (498)
Q Consensus 391 ~~i~~~~------------~i~-~~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~ 455 (498)
++|.|++ .|. ++.|.+++||++|.|+++.+.+++||+++.||+++.|. ++++..+..++.++++ .
T Consensus 278 ~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~ 357 (482)
T PRK14352 278 VVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKN 357 (482)
T ss_pred cEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcc
Confidence 3333332 221 34445566666666665566677777778888777775 5555555555555443 3
Q ss_pred HhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCCC
Q 010874 456 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 456 s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
++++++ +.|++.+.+.+|+||+++.||+++++.|.++
T Consensus 358 ~~I~~~---~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~ 394 (482)
T PRK14352 358 ATIGRG---TKVPHLTYVGDADIGEHSNIGASSVFVNYDG 394 (482)
T ss_pred cEECCC---cEEccCceecccEECCCcEECCCcEEecccc
Confidence 445555 6677777777888888888888888877553
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=361.18 Aligned_cols=355 Identities=18% Similarity=0.242 Sum_probs=245.7
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
++|+|||||||.|+||+| .+||+|+|++|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.. .+
T Consensus 6 ~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~--------~~- 72 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG--------SG- 72 (481)
T ss_pred CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc--------CC-
Confidence 468999999999999997 589999999999 99999999999999999999999988888777641 11
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
+.++... +..||+++++.++++++. ..++|++++||+ +...++.++++.|+++++++|+++.+
T Consensus 73 --i~~v~~~---------~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~ 137 (481)
T PRK14358 73 --VAFARQE---------QQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGE 137 (481)
T ss_pred --cEEecCC---------CcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEE
Confidence 4444321 236999999999887741 235799999998 44677999999999999999998888
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhC---C
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~---~ 327 (498)
+++ ++.||++.+|++|+|..|.|||..+..+ ....++++|+|+|+++++ ++++... +
T Consensus 138 ~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~-~~~~~i~~~~~ 197 (481)
T PRK14358 138 LPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAP-ELARRIGNDNK 197 (481)
T ss_pred cCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHH-HHHHhcCCCcc
Confidence 775 5579999999889999999998643210 012468999999997653 2333321 2
Q ss_pred CCCchhhhhHHHHhhcC-ceEEEEEcceEeecCCHHHHHHHHHH-hhccCC-------CccccCCCCC-CCCCCccCCCe
Q 010874 328 TSNDFGSEIIPAAIMEH-DVQAYIFRDYWEDIGTIKSFYEANMA-LTKESP-------AFHFYDPKTP-FYTSPRFLPPT 397 (498)
Q Consensus 328 ~~~df~~dii~~~i~~~-~I~~~~~~~~w~dIgt~~dy~~An~~-ll~~~~-------~~~~~~~~~~-i~~~~~i~~~~ 397 (498)
..+.+++|+++.+++++ ++++|.++++|..++.-.+|+.+++. ++++.. .....++... +...+.|++++
T Consensus 198 ~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~ 277 (481)
T PRK14358 198 AGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDV 277 (481)
T ss_pred CCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCC
Confidence 23445789999998875 69999999999999988888787765 443321 0111122111 12223333333
Q ss_pred Eec-Ceeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHH--HHhhcCCcc---------
Q 010874 398 KID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKV--------- 463 (498)
Q Consensus 398 ~i~-~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~--~s~l~~~~~--------- 463 (498)
.|. ++.|. ++.||++|.|+ +|.|++|+||++|.|+++++|.+++++++.+++..+.+ .+.++++..
T Consensus 278 ~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~ 357 (481)
T PRK14358 278 TIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKN 357 (481)
T ss_pred EEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECC
Confidence 332 23333 35566666666 56666666666666666666666666555555554433 233333300
Q ss_pred -----cEEeCCCcEEeeeEECCCCEECCCcEEeCCCC
Q 010874 464 -----PIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 464 -----~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
.+.||+.+.+.+++||+|+.||.++++.|..+
T Consensus 358 ~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~ 394 (481)
T PRK14358 358 ARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDG 394 (481)
T ss_pred ceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCC
Confidence 03444445556788999999999998887643
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=353.07 Aligned_cols=350 Identities=17% Similarity=0.249 Sum_probs=250.3
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
|+.|+|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|++++++..+++.+|+..
T Consensus 3 ~~~~~aiIlAaG~gtRl~~---~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~---------- 68 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMYS---DLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLAD---------- 68 (456)
T ss_pred CCCceEEEEcCCCCCcCCC---CCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhcc----------
Confidence 5679999999999999983 699999999999 99999999999999999999999988888777641
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
..+.++.... ..||+++++.++.+++ ..++|++++||+ +.+.++.++++.|.+.+ +++++.
T Consensus 69 -~~~~~i~~~~---------~~Gt~~al~~a~~~l~-----~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~ 131 (456)
T PRK09451 69 -EPLNWVLQAE---------QLGTGHAMQQAAPFFA-----DDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTV 131 (456)
T ss_pred -CCcEEEECCC---------CCCcHHHHHHHHHhhc-----cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEE
Confidence 0134432211 2699999999988774 236899999998 55678999998886544 456666
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC--
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~-- 327 (498)
+.++ ++.||++.. ++|+|.+|.|||..... ....+++++|+|+|+++.|.++++...+
T Consensus 132 ~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~-----------------~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~ 191 (456)
T PRK09451 132 KLDN--PTGYGRITR-ENGKVVGIVEQKDATDE-----------------QRQIQEINTGILVANGADLKRWLAKLTNNN 191 (456)
T ss_pred EcCC--CCCceEEEe-cCCeEEEEEECCCCChH-----------------HhhccEEEEEEEEEEHHHHHHHHHhcCCcc
Confidence 6554 567999754 57899999999863211 0013578999999999999877765433
Q ss_pred -CCCchhhhhHHHHhhc-CceEEEE------Ecce--EeecCCHHHHHHHHH--Hhhcc-----CCCcc-----------
Q 010874 328 -TSNDFGSEIIPAAIME-HDVQAYI------FRDY--WEDIGTIKSFYEANM--ALTKE-----SPAFH----------- 379 (498)
Q Consensus 328 -~~~df~~dii~~~i~~-~~I~~~~------~~~~--w~dIgt~~dy~~An~--~ll~~-----~~~~~----------- 379 (498)
..+.+++|+++.++++ .++++|. ++|| |.|++++++|+++|+ .++.. .|...
T Consensus 192 ~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~ 271 (456)
T PRK09451 192 AQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRD 271 (456)
T ss_pred ccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCC
Confidence 2445678999999987 5899986 4566 788999999999985 23221 12111
Q ss_pred -ccCCCCCCCCCCccCCCeEec-CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-
Q 010874 380 -FYDPKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI- 454 (498)
Q Consensus 380 -~~~~~~~i~~~~~i~~~~~i~-~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~- 454 (498)
.+.+...+...+.+++++.|+ +|.|.+|+||++|+|+ ++.|++|+||++|.|++++.|. ++++.++..+++++++
T Consensus 272 ~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~ 351 (456)
T PRK09451 272 VEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMK 351 (456)
T ss_pred CEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeee
Confidence 111222222233344444442 3566677777777777 6777777777777777777775 6666666666666555
Q ss_pred HHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCCC
Q 010874 455 ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 455 ~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
.+.++++ +.+++.+.+++|.||+++.||+++++.|.++
T Consensus 352 ~~~i~~~---~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~ 389 (456)
T PRK09451 352 KARLGKG---SKAGHLTYLGDAEIGDNVNIGAGTITCNYDG 389 (456)
T ss_pred ceeeCCC---CccCccccccccEECCCCEEcCCeEEecccC
Confidence 4455566 5666666667788888888888888776544
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=346.00 Aligned_cols=342 Identities=19% Similarity=0.274 Sum_probs=256.2
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
+++|||||||.||||+| .+||||+||+|+ |||+|+++.|..+ +++|.|+++++.+++.+|+.+.+ .
T Consensus 2 ~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~-------~-- 67 (430)
T PRK14359 2 KLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF-------P-- 67 (430)
T ss_pred CccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC-------C--
Confidence 57899999999999997 799999999999 9999999999986 79999999999999988886321 1
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCC
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (498)
.++++...+. ...||+++++.+. ...++||+++||..+. ..+.++.+.+.++++++.+.++++
T Consensus 68 ~v~~~~~~~~-------~~~gt~~al~~~~--------~~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~ 130 (430)
T PRK14359 68 GVIFHTQDLE-------NYPGTGGALMGIE--------PKHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLAD 130 (430)
T ss_pred ceEEEEecCc-------cCCCcHHHHhhcc--------cCCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCC
Confidence 2455432211 1369999998742 1247899999998432 234566666677888888888765
Q ss_pred CCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC---CCC
Q 010874 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSN 330 (498)
Q Consensus 254 ~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~---~~~ 330 (498)
+..||.+..+ +|+|..+.|||...... ...+..++|+|+|++++|.++++.... ..+
T Consensus 131 --~~~~g~v~~d-~g~v~~i~e~~~~~~~~-----------------~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e 190 (430)
T PRK14359 131 --PKGYGRVVIE-NGQVKKIVEQKDANEEE-----------------LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKE 190 (430)
T ss_pred --CccCcEEEEc-CCeEEEEEECCCCCccc-----------------ccceEEEeEEEEEEHHHHHHHHHhcCcccccCc
Confidence 4569988775 68999999987532100 013578999999999999877654221 133
Q ss_pred chhhhhHHHHhhc-CceEEEEEc-ceEeecCCHHHHHHHHHHhhccCC-C------------ccccCCCCCCCCCCccCC
Q 010874 331 DFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKESP-A------------FHFYDPKTPFYTSPRFLP 395 (498)
Q Consensus 331 df~~dii~~~i~~-~~I~~~~~~-~~w~dIgt~~dy~~An~~ll~~~~-~------------~~~~~~~~~i~~~~~i~~ 395 (498)
.+++++++.+++. .++.++.++ ++|.||+||+||+.|+..+..+.. . ..+..+...+...+.+++
T Consensus 191 ~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~ 270 (430)
T PRK14359 191 YYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEE 270 (430)
T ss_pred eehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECC
Confidence 4678889888876 679999987 689999999999999876654321 0 112233344444556666
Q ss_pred CeEec-CeeeeceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe
Q 010874 396 PTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 474 (498)
Q Consensus 396 ~~~i~-~~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~ 474 (498)
++.|+ ++.|++++||++|.|+++.|++|+||++|+|+++++|++|+|+++..+. .+++ ++ ++||++++|.
T Consensus 271 ~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~-----~~~~-~~---~~i~~~~~i~ 341 (430)
T PRK14359 271 GVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETK-----NAKL-NG---VKAGHLSYLG 341 (430)
T ss_pred CCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEc-----ccEe-cc---cccccccccc
Confidence 77773 5777899999999999888899999999999999999998887763222 2334 55 7888888888
Q ss_pred eeEECCCCEECCCcEEeCCCC
Q 010874 475 NCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
+|+||+++.||+++++.|.++
T Consensus 342 d~~Ig~~~~ig~~~~~~~~~~ 362 (430)
T PRK14359 342 DCEIDEGTNIGAGTITCNYDG 362 (430)
T ss_pred CCEECCCCEECCCceEccccC
Confidence 888888888888888877654
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=348.72 Aligned_cols=348 Identities=19% Similarity=0.252 Sum_probs=242.2
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|+|||||||.|+||+| .+||+|+|++|+ |||+|+++++.++|+++|+|++++..+.+.+|+.+ ++
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~--------~~--- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN--------RD--- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC--------CC---
Confidence 7899999999999997 799999999999 99999999999999999999999998888777742 11
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
+.++...+ ..||+++++.++.+++ ..++|++++||+ +...++.++++.|.+. .+++++.+.+
T Consensus 66 i~~~~~~~---------~~G~~~ai~~a~~~l~-----~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~ 129 (451)
T TIGR01173 66 VNWVLQAE---------QLGTGHAVLQALPFLP-----DDGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLP 129 (451)
T ss_pred cEEEEcCC---------CCchHHHHHHHHHhcC-----CCCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecC
Confidence 33332211 2599999999988874 236899999998 4456789999988664 3677776664
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC---C
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~---~ 329 (498)
+ +..|+.+..|++|+|..|.|||...... ...+.+++|+|+|++++|.++++...+. .
T Consensus 130 ~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~ 190 (451)
T TIGR01173 130 D--PTGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQG 190 (451)
T ss_pred C--CCCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhcccccccC
Confidence 3 5569999998889999999987532100 0125789999999999987766653321 2
Q ss_pred CchhhhhHHHHhhcC-ceEEEEEcce--EeecCCHHHHHHHHHHhhccCCC------cc-------ccCCC------CCC
Q 010874 330 NDFGSEIIPAAIMEH-DVQAYIFRDY--WEDIGTIKSFYEANMALTKESPA------FH-------FYDPK------TPF 387 (498)
Q Consensus 330 ~df~~dii~~~i~~~-~I~~~~~~~~--w~dIgt~~dy~~An~~ll~~~~~------~~-------~~~~~------~~i 387 (498)
+.+..++++.+++++ ++++|.+++| |.+++||++|.+++..+..+.+. .. ...+. ..+
T Consensus 191 e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i 270 (451)
T TIGR01173 191 EYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEI 270 (451)
T ss_pred cEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEE
Confidence 345678999988774 7999999988 99999999999987766532110 00 11111 122
Q ss_pred CCCCcc------CCCeEec-CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-HHh
Q 010874 388 YTSPRF------LPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASL 457 (498)
Q Consensus 388 ~~~~~i------~~~~~i~-~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~s~ 457 (498)
.+++.+ ++++.|+ +|.|.+++||++|+|+ +|.|.+++||++|.||++++|. ++++.++..++..+++ .+.
T Consensus 271 ~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ 350 (451)
T TIGR01173 271 DPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNAR 350 (451)
T ss_pred cCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcE
Confidence 222222 2222221 2444556666666666 5666666666666666666665 3555555555555444 234
Q ss_pred hcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCCC
Q 010874 458 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 458 l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
++++ +.|++++.+.+|.||+++.||+++++.|.++
T Consensus 351 ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~ 385 (451)
T TIGR01173 351 IGKG---SKAGHLSYLGDAEIGSNVNIGAGTITCNYDG 385 (451)
T ss_pred ECCC---cEecceeeEeeeEEcCCcEECCCeEEeCccc
Confidence 5555 5566666666788888888888887776543
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=316.29 Aligned_cols=234 Identities=26% Similarity=0.433 Sum_probs=201.7
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|+|||||||.||||+|||...||+|+||.+| |||+|+|+.|..+||++|.|+++++..... +..+++|.+|+
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~----~~llGdgs~~g--- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTF----KELLGDGSDFG--- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhh----hhhhcCccccC---
Confidence 7899999999999999999999999999999 999999999999999999999998554332 22246777887
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
+.+.+..|+. +.|.|+|+.-+.+++. +++|+++.||.++..++.++++.+.+++++.++++.++++
T Consensus 73 v~itY~~Q~~-------p~GlA~Av~~a~~fv~------~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~d- 138 (286)
T COG1209 73 VDITYAVQPE-------PDGLAHAVLIAEDFVG------DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD- 138 (286)
T ss_pred cceEEEecCC-------CCcHHHHHHHHHhhcC------CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCC-
Confidence 5666666754 4799999999998885 4899999999988779999999999888899999999997
Q ss_pred CCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC-CCc-h
Q 010874 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SND-F 332 (498)
Q Consensus 255 ~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~-~~d-f 332 (498)
|++||++.+|++|+|+.+.|||+.|. |+++-+|+|+|+++++. .++...|+ +.+ =
T Consensus 139 -P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGElE 195 (286)
T COG1209 139 -PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGELE 195 (286)
T ss_pred -cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCceE
Confidence 78899999999999999999999874 58999999999999996 55666665 222 2
Q ss_pred hhhhHHHHhhcCc-eEEEEEcceEeecCCHHHHHHHHHHhhc
Q 010874 333 GSEIIPAAIMEHD-VQAYIFRDYWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 333 ~~dii~~~i~~~~-I~~~~~~~~w~dIgt~~dy~~An~~ll~ 373 (498)
++|+++.+++++. +......|+|.|.||++||++|++.++.
T Consensus 196 ITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 196 ITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred ehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 6899999998865 5556667899999999999999999876
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=340.90 Aligned_cols=352 Identities=16% Similarity=0.204 Sum_probs=233.1
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
.+.|||||||.||||+ ..+||+|+|++|+ |||+|++++|...++++|+|++++..+.+.+++.. .
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~--------~--- 69 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPD--------E--- 69 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhccc--------c---
Confidence 4789999999999997 4799999999999 99999999999999999999999988777655531 1
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-e-eecCHHHHHHHHHHcCCCeEEEEEec
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-L-YRMDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l-~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
.++++...+ ..||+++++.+++++++ ...++|++++||+ + ...++.++++.|+ ++++++++.++
T Consensus 70 ~~~~v~~~~---------~~Gt~~al~~a~~~l~~---~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~ 135 (456)
T PRK14356 70 DARFVLQEQ---------QLGTGHALQCAWPSLTA---AGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTL 135 (456)
T ss_pred CceEEEcCC---------CCCcHHHHHHHHHHHhh---cCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEc
Confidence 134443221 26999999999988863 1247899999998 3 3566889998875 66788888777
Q ss_pred CCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC---C
Q 010874 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 328 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~---~ 328 (498)
++ +..||++.. ++|+|..|.|||..... .....+.++++|+|+|++++|..+++...+ .
T Consensus 136 ~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~---------------~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~ 197 (456)
T PRK14356 136 PD--PGAYGRVVR-RNGHVAAIVEAKDYDEA---------------LHGPETGEVNAGIYYLRLDAVESLLPRLTNANKS 197 (456)
T ss_pred CC--CCCceEEEE-cCCeEEEEEECCCCChH---------------HhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccC
Confidence 76 567998877 57899999998763210 000013678999999999998777654322 2
Q ss_pred CCchhhhhHHHHhhc-CceEEEEEcc--eEeecCCHHHHHHHHHHhhccCCC------ccccCC-CCCCCCCCccCCCeE
Q 010874 329 SNDFGSEIIPAAIME-HDVQAYIFRD--YWEDIGTIKSFYEANMALTKESPA------FHFYDP-KTPFYTSPRFLPPTK 398 (498)
Q Consensus 329 ~~df~~dii~~~i~~-~~I~~~~~~~--~w~dIgt~~dy~~An~~ll~~~~~------~~~~~~-~~~i~~~~~i~~~~~ 398 (498)
.+.+++++++.+++. .+++++.+.+ +|.+|+||++|.+|+..+..+... ..+.++ ...+...+++++++.
T Consensus 198 ~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~ 277 (456)
T PRK14356 198 GEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAE 277 (456)
T ss_pred CcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCE
Confidence 335678899888765 5799999866 579999999999998777654211 001111 111222233333333
Q ss_pred ec-------------------CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-HH
Q 010874 399 ID-------------------NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-AS 456 (498)
Q Consensus 399 i~-------------------~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~s 456 (498)
|. +|.|.+++||+||.|+ +|.|.+++||++|.||++++|. ++++.++..++..+++ .+
T Consensus 278 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~ 357 (456)
T PRK14356 278 IYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKA 357 (456)
T ss_pred EeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeee
Confidence 32 2333344444444444 4444444455555555444443 3444444334444333 23
Q ss_pred hhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCCC
Q 010874 457 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 457 ~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
++.++ +.|++++++.+|+||+++.||+++.+.+.++
T Consensus 358 ~i~~~---~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~ 393 (456)
T PRK14356 358 VLGKG---AKANHLTYLGDAEIGAGANIGAGTITCNYDG 393 (456)
T ss_pred EecCC---cEecccccccCeEECCCCEECCCceeecccc
Confidence 44444 4555555566777888888888877766554
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=337.25 Aligned_cols=311 Identities=18% Similarity=0.217 Sum_probs=219.7
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
|+++.|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+|+.+ + +
T Consensus 3 ~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-~-------~ 70 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAK-I-------A 70 (446)
T ss_pred cccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhc-c-------C
Confidence 6678999999999999984 689999999999 99999999999999999999999998888877742 1 1
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeEEEEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
. .+.++. +. +..|++++++.++.+++. ..++|++++||+ ++ ..++..+++ |.+.++++++.+.
T Consensus 71 ~-~~~~~~--~~-------~~~G~~~sl~~a~~~l~~----~~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~~~ 135 (446)
T PRK14353 71 P-DAEIFV--QK-------ERLGTAHAVLAAREALAG----GYGDVLVLYGDTPLITAETLARLRE-RLADGADVVVLGF 135 (446)
T ss_pred C-CceEEE--cC-------CCCCcHHHHHHHHHHHhc----cCCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEEEE
Confidence 0 122222 11 126999999999888751 247899999998 44 445777777 4456778888777
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC--
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~-- 327 (498)
+..+ +..||.+.. ++|+|..+.|||...... ....++++|+|+|+++.|.++++...+
T Consensus 136 ~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 195 (446)
T PRK14353 136 RAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGNDN 195 (446)
T ss_pred EeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhcccC
Confidence 7654 567988877 578999999998642100 012578999999999888667665432
Q ss_pred -CCCchhhhhHHHHhhc-CceEEEEEc-ceEeecCCHHHHHHHHHHhhcc-------------CCCccccCCCCCCCCCC
Q 010874 328 -TSNDFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKE-------------SPAFHFYDPKTPFYTSP 391 (498)
Q Consensus 328 -~~~df~~dii~~~i~~-~~I~~~~~~-~~w~dIgt~~dy~~An~~ll~~-------------~~~~~~~~~~~~i~~~~ 391 (498)
..+.+++++++.+++. .+++++.++ ++|.||+||+||..|+..+..+ .|...++.+...|.+++
T Consensus 196 ~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 275 (446)
T PRK14353 196 AKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDV 275 (446)
T ss_pred CCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCC
Confidence 1234567889888876 469999986 5799999999999998644322 01111223333333333
Q ss_pred ccCCCeEec-------------CeeeeceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCcccc
Q 010874 392 RFLPPTKID-------------NCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQ 449 (498)
Q Consensus 392 ~i~~~~~i~-------------~~~I~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~ 449 (498)
++++++.|. .+.|.+++||++|+|+ ++.|. +|+||++|.||++|.|.+++++++..+.
T Consensus 276 ~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~ 348 (446)
T PRK14353 276 VIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVN 348 (446)
T ss_pred EECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEEC
Confidence 333333332 1333457777777777 67775 7788888888888777777776654433
|
|
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=322.46 Aligned_cols=243 Identities=17% Similarity=0.258 Sum_probs=192.6
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-c------
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-F------ 164 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~------ 164 (498)
|.+|+|||||||.||||+|+|..+||||+||+|+ |+|+|+|++|.++|+++|+|+++|+.+++.+|+...+ +
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 5689999999999999999999999999999999 9999999999999999999999999999999985422 1
Q ss_pred ----------CCCCcCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeee-------
Q 010874 165 ----------GNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR------- 227 (498)
Q Consensus 165 ----------~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~------- 227 (498)
..+..++ +.+....|. +++|||+||+++.++++ .++|+|++||++++
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~i~~~~q~-------~~lGtg~Av~~a~~~l~------~~~flvv~gD~l~~~~~~~~~ 143 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPG---VTIMNVRQA-------QPLGLGHSILCARPVVG------DNPFVVVLPDIIIDDATADPL 143 (297)
T ss_pred hcchhhhhhhhhcCCCC---ceEEEeeCC-------CcCchHHHHHHHHHHhC------CCCEEEEECCeeccccccccc
Confidence 0011122 233333332 35899999999998885 36899999999987
Q ss_pred -cCHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEEC----CCCC---EEEEEeCCCccccccccccccccCCCcccc
Q 010874 228 -MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID----NMGR---IAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (498)
Q Consensus 228 -~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d----~~gr---V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~ 299 (498)
+++.++++.|.++++.++ ++.++.+ .++.||++.+| ++|+ |..|.|||..+..
T Consensus 144 ~~~l~~li~~~~~~~~~~~-~~~~~~~-~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------- 204 (297)
T TIGR01105 144 RYNLAAMIARFNETGRSQV-LAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred hhHHHHHHHHHHHhCCcEE-EEEEcCC-CCccceEEEecccccCCCCeeeEeEEEECCCCccc-----------------
Confidence 589999999987777664 4444432 26789999984 4564 5899999964321
Q ss_pred ccCCcceeeeEEEEcHHHHHHHHHhhCCC--CCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhh
Q 010874 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 300 ~~~~~l~~~GIYif~~~vL~~ll~~~~~~--~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll 372 (498)
..++++++|+|+|++++|.. ++...+. .+..++++++.+++++++++|.++|+|+|||+|++|.+||.++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~-l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 205 -LDSDLMAVGRYVLSADIWAE-LERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCcCEEEEEEEEECHHHHHH-HhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 02478999999999999874 4543222 23346799999999999999999999999999999999999873
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=314.86 Aligned_cols=241 Identities=34% Similarity=0.586 Sum_probs=194.1
Q ss_pred EEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeE-EEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI-FVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I-~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
+|||||||.||||+|||.++||||+|++|+||||+|+|++|.++|+++| +|+++++.+++.+|+.+.+ +++ -.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~-----~~~-~~ 74 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGY-----KFG-VK 74 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSG-----GGT-EE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccc-----ccc-cc
Confidence 6999999999999999999999999999999999999999999999995 5555588888988886432 222 12
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
+.++. |.. ..|||+||+++..++++. ...++|+|++||++++.++.++++.|+++++++++++...+.+
T Consensus 75 i~~i~--~~~-------~~Gta~al~~a~~~i~~~--~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 143 (248)
T PF00483_consen 75 IEYIV--QPE-------PLGTAGALLQALDFIEEE--DDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVE 143 (248)
T ss_dssp EEEEE--ESS-------SSCHHHHHHHTHHHHTTS--EE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESS
T ss_pred ceeee--ccc-------ccchhHHHHHHHHHhhhc--cccceEEEEeccccccchhhhHHHhhhcccccccccccccccc
Confidence 44443 322 159999999999988631 0023599999999999999999999999998554444444444
Q ss_pred CCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHH--hhCCCCCch
Q 010874 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR--WRYPTSNDF 332 (498)
Q Consensus 255 ~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~--~~~~~~~df 332 (498)
.++.||++.+|++|+|.+|.|||..+.. +.++++|+|+|++++|..+++ .......++
T Consensus 144 ~~~~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~ 203 (248)
T PF00483_consen 144 DPSRYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGEDF 203 (248)
T ss_dssp GGGGSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSHH
T ss_pred ccccceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhhH
Confidence 4788999999999999999999986531 368999999999999987755 223346678
Q ss_pred hhhhHHHHhhcCc-eEEEEEcc--eEeecCCHHHHHHHHHHhhc
Q 010874 333 GSEIIPAAIMEHD-VQAYIFRD--YWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 333 ~~dii~~~i~~~~-I~~~~~~~--~w~dIgt~~dy~~An~~ll~ 373 (498)
+.++++.+++++. +.++.+++ +|.|||||++|++||+.+++
T Consensus 204 l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 204 LTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 8999999998874 56778888 79999999999999999985
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=336.97 Aligned_cols=352 Identities=22% Similarity=0.306 Sum_probs=248.2
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
+.++|||||||.|+||++ .+||+|+||+|+ |||+|+|++|.++|+++++|+++++.+++.+|+.. +
T Consensus 1 m~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-----~----- 66 (458)
T PRK14354 1 MNRYAIILAAGKGTRMKS---KLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-----R----- 66 (458)
T ss_pred CCceEEEEeCCCCcccCC---CCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-----C-----
Confidence 357899999999999984 799999999999 99999999999999999999999998888777641 1
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
+.++.... ..||++++++++.++++ ..+.|+++.||. +...++.++++.|.+.+++.|+++.+
T Consensus 67 --~~~~~~~~---------~~g~~~al~~a~~~l~~----~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~ 131 (458)
T PRK14354 67 --SEFALQEE---------QLGTGHAVMQAEEFLAD----KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAI 131 (458)
T ss_pred --cEEEEcCC---------CCCHHHHHHHHHHHhcc----cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEE
Confidence 22222111 26999999999988852 136799999997 44667899999998888888888777
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC--
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-- 328 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~-- 328 (498)
.++ +..|+.+..|++++|..+.|||..... ....+++++|+|+|+++.|.+.++.....
T Consensus 132 ~~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~ 192 (458)
T PRK14354 132 AEN--PTGYGRIIRNENGEVEKIVEQKDATEE-----------------EKQIKEINTGTYCFDNKALFEALKKISNDNA 192 (458)
T ss_pred cCC--CCCceEEEEcCCCCEEEEEECCCCChH-----------------HhcCcEEEEEEEEEEHHHHHHHHHHhCcccc
Confidence 654 456898888888999999998752100 00135789999999998776666543321
Q ss_pred -CCchhhhhHHHHhhc-CceEEEEEcce--EeecCCHHHHHHHHHHhhccC------CCccccCCC-------CCCCCCC
Q 010874 329 -SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPK-------TPFYTSP 391 (498)
Q Consensus 329 -~~df~~dii~~~i~~-~~I~~~~~~~~--w~dIgt~~dy~~An~~ll~~~------~~~~~~~~~-------~~i~~~~ 391 (498)
.+.+.+++++.+++. .++++|.++++ |+++++++||..|+..+..+. +...++++. ..+..++
T Consensus 193 ~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~ 272 (458)
T PRK14354 193 QGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDT 272 (458)
T ss_pred CCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCC
Confidence 233467888888866 57999999876 567779999999987553221 122233332 2233333
Q ss_pred ccCCCe------------Ee-cCeeeeceEEcCCCEECceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-HH
Q 010874 392 RFLPPT------------KI-DNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-AS 456 (498)
Q Consensus 392 ~i~~~~------------~i-~~~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~s 456 (498)
.+.+++ .| .++.|.+++||++|.|+++.+.+|+||++|+||++|.|. +++|.++..+..++++ .+
T Consensus 273 ~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~ 352 (458)
T PRK14354 273 VIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKS 352 (458)
T ss_pred EEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeee
Confidence 333222 22 124444566666776665666677777777777777776 6666666555555554 34
Q ss_pred hhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCCC
Q 010874 457 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 457 ~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
.++++ +.|++.+.+++++||+++.||+++.+.|.++
T Consensus 353 ~i~~~---~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~ 388 (458)
T PRK14354 353 TIGEG---TKVSHLTYIGDAEVGENVNIGCGTITVNYDG 388 (458)
T ss_pred EECCC---CEecceeeecCcccCCceEEcCceeeccccc
Confidence 44555 5566666667778888888888887776543
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=318.17 Aligned_cols=359 Identities=19% Similarity=0.285 Sum_probs=255.2
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccC-chhHHHHHHhhccCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~-~~~l~~hl~~~~~~~~~~~ 170 (498)
|.+|||||+|||.||||--+|...||+||||||+ |||+|+|.+|.++|+++|.|++... ...|...|...+ .. +.
T Consensus 7 ~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~-~l--~~ 82 (433)
T KOG1462|consen 7 MSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNI-DL--KK 82 (433)
T ss_pred hHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCC-cc--cc
Confidence 7889999999999999999999999999999999 9999999999999999999999763 334544453322 11 11
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
....|++-...+. -.||+++||.....+. .++||+++||.++++++..+++++|..++...+++..
T Consensus 83 ~~~~v~ip~~~~~--------d~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~ 148 (433)
T KOG1462|consen 83 RPDYVEIPTDDNS--------DFGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGN 148 (433)
T ss_pred cccEEEeeccccc--------ccCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhcc
Confidence 1112333322221 1699999999988774 3799999999999999999999999877765554443
Q ss_pred cCC---------CCCCCceEEEECCC-CCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHH
Q 010874 251 VGE---------SRASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (498)
Q Consensus 251 ~~~---------~~~~~~g~v~~d~~-grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ 320 (498)
... +....+.++.++++ +|+.... ... .....+++..++|...|+. ...+.+.++++|+|+.+++..
T Consensus 149 ~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~-~~~-d~~~~l~i~~slL~~~prl-tl~t~L~dahiY~~k~~v~d~ 225 (433)
T KOG1462|consen 149 ALSEVPIPGQKGKKKQARDVIGINEDTERLAYSS-DSA-DEEEPLVIRKSLLWNHPRL-TLTTKLVDAHIYVFKHWVIDL 225 (433)
T ss_pred ccccccccCcccccccccceeeeccccceeEEee-cCC-cCCCceehhhhhhhcCCce-EEeccccceeeeeeHHHHHHH
Confidence 221 11123456666654 4544332 221 1223466777777767764 346789999999999999975
Q ss_pred HHHhhCCCCCchhhhhHHHHhhc---------------------------------CceEEEEEc--ceEeecCCHHHHH
Q 010874 321 LLRWRYPTSNDFGSEIIPAAIME---------------------------------HDVQAYIFR--DYWEDIGTIKSFY 365 (498)
Q Consensus 321 ll~~~~~~~~df~~dii~~~i~~---------------------------------~~I~~~~~~--~~w~dIgt~~dy~ 365 (498)
+-+. ++...|-.+++|.++++ -++++|... ..+..++|.-.|+
T Consensus 226 l~~~--~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~ 303 (433)
T KOG1462|consen 226 LSEK--ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYM 303 (433)
T ss_pred HhcC--CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHH
Confidence 5332 22233344445544432 234555543 3577899999999
Q ss_pred HHH--HHhhccCCCcc----ccCCCCCCCCCCccCCCeEec-CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEE
Q 010874 366 EAN--MALTKESPAFH----FYDPKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVEL 437 (498)
Q Consensus 366 ~An--~~ll~~~~~~~----~~~~~~~i~~~~~i~~~~~i~-~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i 437 (498)
++| +.+..-.+... +....+-+.....+++.++|+ ++.|+.|+||.||.|| +++|.+|+|+++++||+||.|
T Consensus 304 eiN~~k~~~~l~~e~~~~k~~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~I 383 (433)
T KOG1462|consen 304 EINRDKKLKKLCSEAKFVKNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNI 383 (433)
T ss_pred hhhHHHHHHHhccccccccchhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcce
Confidence 999 44443222211 111223445567788888885 7888899999999999 889999999999999999999
Q ss_pred cceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 438 KDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 438 ~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
++|||+.+ +.||++++++||+||++-+|.+..+..|
T Consensus 384 ensIIg~g-------------------A~Ig~gs~L~nC~Ig~~yvVeak~~~~~ 419 (433)
T KOG1462|consen 384 ENSIIGMG-------------------AQIGSGSKLKNCIIGPGYVVEAKGKHGG 419 (433)
T ss_pred ecceeccc-------------------ceecCCCeeeeeEecCCcEEcccccccc
Confidence 99999888 8999999999999999999986555443
|
|
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=318.47 Aligned_cols=245 Identities=18% Similarity=0.269 Sum_probs=195.6
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cC-----
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG----- 165 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~----- 165 (498)
|++|+|||||||.||||+|||..+||||+||+|+ |+|+|+|++|.++||++|+|+++++.+++.+|+...| +.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 6789999999999999999999999999999999 9999999999999999999999999999999996432 10
Q ss_pred -----------CCCcCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeee-------
Q 010874 166 -----------NGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR------- 227 (498)
Q Consensus 166 -----------~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~------- 227 (498)
....++ +++....|.. ++|||+|++++++++. .++|+|++||++++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~~-------~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQGQ-------PLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecCC-------cCchHHHHHHHHHHcC------CCCEEEEECCeeccCcccccc
Confidence 000111 2333333432 3799999999998884 36799999999886
Q ss_pred -cCHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEEC----CCC---CEEEEEeCCCccccccccccccccCCCcccc
Q 010874 228 -MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID----NMG---RIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (498)
Q Consensus 228 -~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d----~~g---rV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~ 299 (498)
.|+.++++.|.+.++++++ +....+ .++.||++.+| ++| +|..|.|||..+..
T Consensus 144 ~~dl~~li~~h~~~~~~~~~-~~~~~~-~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------- 204 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQVL-AKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred chhHHHHHHHHHHhCCcEEE-EEECCC-CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc-----------------
Confidence 5899999999888877544 444332 46789999996 355 78999999974321
Q ss_pred ccCCcceeeeEEEEcHHHHHHHHHhhCCC--CCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHh-hcc
Q 010874 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL-TKE 374 (498)
Q Consensus 300 ~~~~~l~~~GIYif~~~vL~~ll~~~~~~--~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~l-l~~ 374 (498)
..++++++|+|+|++++|..+.+ ..+. .+.+++++++.+++++++.+|.++|+|+|||+|++|.+|+.++ ++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~l~~-~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~~~~ 280 (297)
T PRK10122 205 -LDSDLMAVGRYVLSADIWPELER-TEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRN 280 (297)
T ss_pred -CCccEEEEEEEEECHHHHHHHHh-CCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHHhcC
Confidence 02468999999999999876643 2222 3345789999999999999999999999999999999999998 543
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=333.70 Aligned_cols=340 Identities=20% Similarity=0.248 Sum_probs=226.7
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|+|||||||.||||++ .+||+|+|++|+ |||+|+|++|.+.+ ++|+|++++..+.+.+|+.. +
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~-----~------- 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE-----W------- 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc-----c-------
Confidence 7899999999999985 799999999999 99999999999875 89999999988877766631 1
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
+.++. +.. .+||+++++.++.+++ ..++|++++||+ +.+.++.++++.|+++++++|+++.+.+
T Consensus 64 ~~~~~--~~~-------~~g~~~ai~~a~~~l~-----~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~ 129 (448)
T PRK14357 64 VKIFL--QEE-------QLGTAHAVMCARDFIE-----PGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE 129 (448)
T ss_pred cEEEe--cCC-------CCChHHHHHHHHHhcC-----cCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC
Confidence 23332 211 2699999999998874 247899999997 5677899999999998999999998877
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC---C
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~---~ 329 (498)
+ +..||.+..| +|+| .+.|||..+... ...+++++|+|+|++++|.++++...+. .
T Consensus 130 ~--~~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~ 188 (448)
T PRK14357 130 D--PTGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKG 188 (448)
T ss_pred C--CCCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCC
Confidence 5 5679998887 6788 888876532100 0125789999999999987776643322 2
Q ss_pred CchhhhhHHHHhhcCceEEEEEcce--EeecCCHHHHHHHHHHhhcc----C--CCcc-------ccCCCCCCCCCCccC
Q 010874 330 NDFGSEIIPAAIMEHDVQAYIFRDY--WEDIGTIKSFYEANMALTKE----S--PAFH-------FYDPKTPFYTSPRFL 394 (498)
Q Consensus 330 ~df~~dii~~~i~~~~I~~~~~~~~--w~dIgt~~dy~~An~~ll~~----~--~~~~-------~~~~~~~i~~~~~i~ 394 (498)
..++.|+++.+ .++++|.+.+| |.+++++++|..+...+... . +... ++++...+..++.+.
T Consensus 189 ~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~ 265 (448)
T PRK14357 189 EYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIY 265 (448)
T ss_pred eEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEc
Confidence 23456777766 34888999898 66777999998877655321 0 1112 223333333444443
Q ss_pred CCeEec-------------CeeeeceEEcCCCEECceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-HHhhc
Q 010874 395 PPTKID-------------NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLA 459 (498)
Q Consensus 395 ~~~~i~-------------~~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~s~l~ 459 (498)
|++.|. ++.|.+|+||+||+|..+.+.+|+||+++.|+++++|. ++++.++..++..+++ .+.++
T Consensus 266 ~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig 345 (448)
T PRK14357 266 PMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIG 345 (448)
T ss_pred CCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEc
Confidence 333331 13333455555555554555666666666667777664 3555555555544433 22333
Q ss_pred CCcccEEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 460 EGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 460 ~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
++ +.+++.+.+++++||+++.||+++++.+
T Consensus 346 ~~---~~~~~~~~~~~~~Ig~~~~ig~~~~~~~ 375 (448)
T PRK14357 346 EN---TKAQHLTYLGDATVGKNVNIGAGTITCN 375 (448)
T ss_pred CC---cCccccccccCcEECCCcEECCCccccc
Confidence 33 2333333444455555555555555443
|
|
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=309.67 Aligned_cols=235 Identities=22% Similarity=0.370 Sum_probs=193.7
Q ss_pred EEEEeCC--CCCcccCCccCCCccceecCCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 97 AIILGGG--AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 97 aVILAaG--~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~-sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
||||||| .||||+|||..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+++.+|+.... ..++ .
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~----~~~~-~ 74 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQ----QEFN-V 74 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcc----cccC-c
Confidence 6999999 8999999999999999999999 999999999999 6999999999999999999996321 1122 1
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCC
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (498)
.+.++ .|.. .+||++|++.++++++. ...++|+|++||++++.|+.++++.|+++++++|+++.+++.
T Consensus 75 ~i~~~--~~~~-------~~Gt~~al~~a~~~l~~---~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~ 142 (257)
T cd06428 75 PIRYL--QEYK-------PLGTAGGLYHFRDQILA---GNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASR 142 (257)
T ss_pred eEEEe--cCCc-------cCCcHHHHHHHHHHhhc---cCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccc
Confidence 23332 2221 26999999999988852 124689999999999999999999999999999999988754
Q ss_pred CCCCCceEEEEC-CCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC-----
Q 010874 254 SRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP----- 327 (498)
Q Consensus 254 ~~~~~~g~v~~d-~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~----- 327 (498)
+.++.||++.+| ++|+|..|.|||..+. +.++++|+|+|++++|..+ ....+
T Consensus 143 ~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~i-~~~~~~~~~e 200 (257)
T cd06428 143 EQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDTI-KKAFQSRQQE 200 (257)
T ss_pred cccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHHH-hhhccccccc
Confidence 456789999998 6789999999987432 3689999999999998654 32211
Q ss_pred -------------CCCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHh
Q 010874 328 -------------TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 328 -------------~~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~l 371 (498)
...++.+++++.+++++++++|.++|||.||||+++|++||+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 201 AQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred cccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 11245579999999999999999999999999999999999864
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=302.10 Aligned_cols=232 Identities=26% Similarity=0.426 Sum_probs=195.6
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|++||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+. .+ . .+++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~-~~-~--~~~~--- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLK-EY-E--KKLG--- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHh-cc-c--ccCC---
Confidence 7899999999999999999999999999999 9999999999999999999999999999999986 22 1 1222
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
++++...+.. ..||+++++.+..+++. ..++|+|++||++++.++.++++.|+++++++|+++.+.++
T Consensus 73 ~~i~~~~~~~-------~~G~~~al~~a~~~~~~----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 140 (233)
T cd06425 73 IKITFSIETE-------PLGTAGPLALARDLLGD----DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED- 140 (233)
T ss_pred eEEEeccCCC-------CCccHHHHHHHHHHhcc----CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC-
Confidence 4444432221 36999999999988851 23679999999999999999999999999999999988765
Q ss_pred CCCCceEEEECC-CCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCchh
Q 010874 255 RASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (498)
Q Consensus 255 ~~~~~g~v~~d~-~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df~ 333 (498)
++.||++.+|+ +|+|+.+.|||..+. ++++++|+|+|++++|..+.. ...++.
T Consensus 141 -~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l~~----~~~~~~ 194 (233)
T cd06425 141 -PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRIPL----RPTSIE 194 (233)
T ss_pred -ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhccc----Ccccch
Confidence 56799999987 789999999987532 367899999999999975432 223345
Q ss_pred hhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhh
Q 010874 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 334 ~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll 372 (498)
.++++.+++++++.+|.+++||.|||||++|++|++.+|
T Consensus 195 ~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 195 KEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred hhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 688999999999999999999999999999999998765
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=324.81 Aligned_cols=348 Identities=20% Similarity=0.264 Sum_probs=248.7
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|.+||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++|+.+++|++++..+++.+|+.+ ++ .
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~--------~~--~ 67 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAH--------LP--G 67 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcc--------cC--C
Confidence 6799999999999985 789999999999 99999999999999999999999988888777742 11 2
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
+.++.... ..|++++++.++.++++ ..++++|++||. +...++.++++.|++.++++++++.+.+
T Consensus 68 i~~v~~~~---------~~G~~~sv~~~~~~l~~----~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 134 (450)
T PRK14360 68 LEFVEQQP---------QLGTGHAVQQLLPVLKG----FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP 134 (450)
T ss_pred eEEEEeCC---------cCCcHHHHHHHHHHhhc----cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 45543211 36999999999888752 236799999998 5567899999999998888888777766
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC---C
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~---~ 329 (498)
+ +..||.+.+|++|+|..|.|||..... ...++++++|+|+|+++.|.++++...+. .
T Consensus 135 ~--~~~~g~~~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~ 195 (450)
T PRK14360 135 N--PKGYGRVFCDGNNLVEQIVEDRDCTPA-----------------QRQNNRINAGIYCFNWPALAEVLPKLSSNNDQK 195 (450)
T ss_pred C--CCCccEEEECCCCCEEEEEECCCCChh-----------------HhcCcEEEEEEEEEEHHHHHHHHhhccccccCC
Confidence 5 556999999989999999999863210 00236899999999999998877654332 3
Q ss_pred CchhhhhHHHHhhcCceEEEEEcce--EeecCCHHHHHHHHHHhhcc----C--CCccccCCC-------------C---
Q 010874 330 NDFGSEIIPAAIMEHDVQAYIFRDY--WEDIGTIKSFYEANMALTKE----S--PAFHFYDPK-------------T--- 385 (498)
Q Consensus 330 ~df~~dii~~~i~~~~I~~~~~~~~--w~dIgt~~dy~~An~~ll~~----~--~~~~~~~~~-------------~--- 385 (498)
+.+++++++.+. ++.++.+.++ |..+++++++..+...+... + +...++++. .
T Consensus 196 e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~ 272 (450)
T PRK14360 196 EYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIE 272 (450)
T ss_pred ceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEEC
Confidence 345677777663 3566667766 45699999999987765331 1 111122221 1
Q ss_pred ---CCCCCCccCCCeEe-cCeeeeceEEcCCCEECceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-HHhhc
Q 010874 386 ---PFYTSPRFLPPTKI-DNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLA 459 (498)
Q Consensus 386 ---~i~~~~~i~~~~~i-~~~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~s~l~ 459 (498)
.+...+.+++++.| .++.|.+++|+++|+|+.+.+.+|+||++|+|+++|+|. +++|.++..++..+.+ .+.++
T Consensus 273 ~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~ 352 (450)
T PRK14360 273 PQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLG 352 (450)
T ss_pred CCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccC
Confidence 22222333444444 245566777888888876677788888888889888886 6777777666666554 44555
Q ss_pred CCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCC
Q 010874 460 EGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494 (498)
Q Consensus 460 ~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~ 494 (498)
++ +.|++++++.+++|++++.||+++++.+.+
T Consensus 353 ~~---~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~ 384 (450)
T PRK14360 353 EG---SKVNHLSYIGDATLGEQVNIGAGTITANYD 384 (450)
T ss_pred CC---cEeccceecCCceecCCcEECccceecccc
Confidence 55 455555555666666666666666665543
|
|
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=304.48 Aligned_cols=235 Identities=23% Similarity=0.399 Sum_probs=189.9
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEec-cCchhHHHHHHhhccCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~-~~~~~l~~hl~~~~~~~~~~~ 170 (498)
|+.|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|++. +..+++.+|+. ++..|
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~-----~g~~~ 74 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG-----DGSQW 74 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHc-----Ccccc
Confidence 6789999999999999999999999999999999 99999999999999999998765 44566777764 33345
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-eecCHHHHHHHHHHcCCCeEEEEE
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l-~~~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
+. .+.+. .|.. +.||++|+..+.+++. .+++++++||++ ++.|+.++++.|.+.++++|+++.
T Consensus 75 g~-~i~y~--~q~~-------~~Gta~Al~~a~~~i~------~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~ 138 (292)
T PRK15480 75 GL-NLQYK--VQPS-------PDGLAQAFIIGEEFIG------GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAY 138 (292)
T ss_pred Cc-eeEEE--ECCC-------CCCHHHHHHHHHHHhC------CCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEE
Confidence 42 23333 3322 3699999999998884 256888999975 488999999999888889999888
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC-
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~- 328 (498)
++++ +++||++.+|++|+|+.|.|||..+. ++++++|+|+|+++++.. ++...++
T Consensus 139 ~v~~--p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~~-~~~~~~~~ 194 (292)
T PRK15480 139 HVND--PERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVEM-AKNLKPSA 194 (292)
T ss_pred EcCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHHH-HhhcCCCC
Confidence 8865 67899999998899999999997542 478999999999998864 4443332
Q ss_pred -CCchhhhhHHHHhhcCceEE-EEEcc-eEeecCCHHHHHHHHHHhh
Q 010874 329 -SNDFGSEIIPAAIMEHDVQA-YIFRD-YWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 329 -~~df~~dii~~~i~~~~I~~-~~~~~-~w~dIgt~~dy~~An~~ll 372 (498)
.+-.++++++.+++++++.. +...+ +|.|+||+++|.+|+..+.
T Consensus 195 ~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 195 RGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 22235789999998887754 45567 4999999999999999875
|
|
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=294.68 Aligned_cols=231 Identities=23% Similarity=0.386 Sum_probs=188.8
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccC-chhHHHHHHhhccCCCCcCCCC
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~-~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++ .+++.+|+.. +..|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~-----~~~~~-- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD-----GSDLG-- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc-----ccccC--
Confidence 6899999999999999999999999999999 9999999999999999999998754 4778778752 22333
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-ecCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~-~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
+++....+.. ..||++|++.++.+++ .++|+|++||+++ +.++.++++.|.+.++++|+++.+++
T Consensus 73 -~~i~~~~~~~-------~~G~~~al~~a~~~~~------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (240)
T cd02538 73 -IRITYAVQPK-------PGGLAQAFIIGEEFIG------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN 138 (240)
T ss_pred -ceEEEeeCCC-------CCCHHHHHHHHHHhcC------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3333333321 2699999999988874 3679999999755 66899999999988899999888876
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC--CC
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 330 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~--~~ 330 (498)
+ ++.||++.+|++|+|..|.|||..+. +.++++|+|+|++++|. .++...+. .+
T Consensus 139 ~--~~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~ 194 (240)
T cd02538 139 D--PERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARGE 194 (240)
T ss_pred c--hhcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCCe
Confidence 5 56799999998899999999986532 35789999999999885 55543222 22
Q ss_pred chhhhhHHHHhhcCceEEEEEc--ceEeecCCHHHHHHHHHHh
Q 010874 331 DFGSEIIPAAIMEHDVQAYIFR--DYWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 331 df~~dii~~~i~~~~I~~~~~~--~~w~dIgt~~dy~~An~~l 371 (498)
.+.+++++.+++++++.++.++ +||.|||||++|++||+.+
T Consensus 195 ~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 195 LEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred EEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 3457999999998888888877 9999999999999999865
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=299.94 Aligned_cols=231 Identities=26% Similarity=0.447 Sum_probs=188.9
Q ss_pred EEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEec-cCchhHHHHHHhhccCCCCcCCCCe
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~-~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|+++ ++.+++.+|+. ++..|+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg-----~g~~~g--- 71 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG-----DGSQWG--- 71 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhc-----cccccC---
Confidence 589999999999999999999999999999 99999999999999999998875 55567766664 334454
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-eecCHHHHHHHHHHcCCCeEEEEEecCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGE 253 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l-~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (498)
+++.+..|.. +.||++|++.+.++++ .++|+++.||++ ++.++.++++.|.+.++++|+++.++++
T Consensus 72 ~~i~~~~q~~-------~~Gta~al~~a~~~l~------~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~ 138 (286)
T TIGR01207 72 VNLSYAVQPS-------PDGLAQAFIIGEDFIG------GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSD 138 (286)
T ss_pred ceEEEEEccC-------CCCHHHHHHHHHHHhC------CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccC
Confidence 3444434432 3799999999998885 367889999975 5889999999999888899999988875
Q ss_pred CCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC--CCc
Q 010874 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SND 331 (498)
Q Consensus 254 ~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~--~~d 331 (498)
+++||++.+|++|+|++|.|||..+. ++++++|+|+|+++++. +++...++ .+-
T Consensus 139 --p~~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~ 194 (286)
T TIGR01207 139 --PERYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGEL 194 (286)
T ss_pred --HHHCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCcE
Confidence 57899999998999999999997542 46899999999999875 45543332 223
Q ss_pred hhhhhHHHHhhcCceEEEEE-cce-EeecCCHHHHHHHHHHhh
Q 010874 332 FGSEIIPAAIMEHDVQAYIF-RDY-WEDIGTIKSFYEANMALT 372 (498)
Q Consensus 332 f~~dii~~~i~~~~I~~~~~-~~~-w~dIgt~~dy~~An~~ll 372 (498)
+++++++.+++++++.++.+ .++ |.|+|||++|++|+..+-
T Consensus 195 eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 195 EITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred eHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 46799999999887766666 576 999999999999998774
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=296.41 Aligned_cols=244 Identities=22% Similarity=0.299 Sum_probs=190.7
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cC-----CCC
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG-----NGT 168 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~-----~~~ 168 (498)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+...+ +. .+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 6899999999999999999999999999999 9999999999999999999999999999999996432 11 000
Q ss_pred cC-------CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeec---CHHHHHHHHH
Q 010874 169 NF-------GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHV 238 (498)
Q Consensus 169 ~~-------~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~---dl~~ll~~h~ 238 (498)
.+ -...+++....|. +.+||++|++.+..+++ .++|+|++||+++.. ++.++++.|+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~-------~~~Gt~~al~~~~~~i~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (267)
T cd02541 80 TDLLEEVRIISDLANIHYVRQK-------EPLGLGHAVLCAKPFIG------DEPFAVLLGDDLIDSKEPCLKQLIEAYE 146 (267)
T ss_pred HHHhhhhhcccCCceEEEEEcC-------CCCChHHHHHHHHHHhC------CCceEEEECCeEEeCCchHHHHHHHHHH
Confidence 00 0001222222221 24799999999998874 278999999998764 4999999998
Q ss_pred HcCCCeEEEEEecCCCCCCCceEEEECC----CCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEc
Q 010874 239 DRDADITISCAAVGESRASDYGLVKIDN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFK 314 (498)
Q Consensus 239 ~~~ad~tv~~~~~~~~~~~~~g~v~~d~----~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~ 314 (498)
+.+++ ++++.+++.+.+..||++.+|+ .++|..|.|||..... .+.++++|+|+|+
T Consensus 147 ~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (267)
T cd02541 147 KTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (267)
T ss_pred HhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcC
Confidence 87776 4556666544567899999985 2589999999863211 1368899999999
Q ss_pred HHHHHHHHHhhC-CCCCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhh
Q 010874 315 KDVLFKLLRWRY-PTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 315 ~~vL~~ll~~~~-~~~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll 372 (498)
+++|..+.+... ...+.+..++++.++++++|++|.++|||.|||||++|++||+++.
T Consensus 207 ~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 207 PDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHHHHHHhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 999876533111 1233456799999999899999999999999999999999999874
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=292.10 Aligned_cols=233 Identities=18% Similarity=0.288 Sum_probs=189.7
Q ss_pred EEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCCCCcCC--C
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFG--D 172 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~~~~~~--~ 172 (498)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++|+.+++.+|+.+.. .+.+.++. .
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 9999999999999999999999999999999986311 11111110 0
Q ss_pred ------------CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHc
Q 010874 173 ------------GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240 (498)
Q Consensus 173 ------------~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~ 240 (498)
..+++.. |. ..+||++|+++++.++. .++|+|++||++++.|+.++++.|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~~-------~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVD--TG-------ESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeeee--cC-------CcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0111111 11 13799999999988874 378999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHH
Q 010874 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (498)
Q Consensus 241 ~ad~tv~~~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ 320 (498)
++++|+++.+ + +..||.+.+|+ ++|..|.|||... +.++++|+|+|++++|.
T Consensus 145 ~~d~tl~~~~--~--~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~- 196 (254)
T TIGR02623 145 GKKATVTAVQ--P--PGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVLD- 196 (254)
T ss_pred CCCEEEEEec--C--CCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-
Confidence 9999987652 2 46799999985 6999999998542 25789999999999984
Q ss_pred HHHhhCCCCCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccC
Q 010874 321 LLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (498)
Q Consensus 321 ll~~~~~~~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~ 375 (498)
+++. ...++.+++++.+++++++++|.++|||.|||||++|.+|+..+....
T Consensus 197 ~l~~---~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 197 LIDG---DATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred hccc---cCchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcCC
Confidence 5543 233677899999999999999999999999999999999999887643
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=293.70 Aligned_cols=238 Identities=21% Similarity=0.301 Sum_probs=186.9
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cC-----CCC
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG-----NGT 168 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~-----~~~ 168 (498)
|+|||||||.||||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+...+ +. .+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 6899999999999999999999999999999 9999999999999999999999999999999996432 11 000
Q ss_pred c--------CCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeec---CHHHHHHHH
Q 010874 169 N--------FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSH 237 (498)
Q Consensus 169 ~--------~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~---dl~~ll~~h 237 (498)
. +. ..+.+....|. +..||++|++.++.++. .++|+|++||+++.. ++.++++.|
T Consensus 80 ~~~~~~~~~~~-~~~~i~~~~~~-------~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~ 145 (260)
T TIGR01099 80 EELLKEVRSIS-PLATIFYVRQK-------EQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLY 145 (260)
T ss_pred HHHHHHhhhcc-ccceEEEEecC-------CCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHH
Confidence 0 00 01122222221 24799999999988773 378999999998754 699999999
Q ss_pred HHcCCCeEEEEEecCCCCCCCceEEEECC----CCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEE
Q 010874 238 VDRDADITISCAAVGESRASDYGLVKIDN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVF 313 (498)
Q Consensus 238 ~~~~ad~tv~~~~~~~~~~~~~g~v~~d~----~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif 313 (498)
+++++++ +++..++.+.+++||++.+|+ +++|..|.|||..... .+.++++|+|+|
T Consensus 146 ~~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~ 205 (260)
T TIGR01099 146 EKYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVL 205 (260)
T ss_pred HHhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEEC
Confidence 9988886 556566544567899999862 3699999999853211 136789999999
Q ss_pred cHHHHHHHHHhhCCC-CCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHH
Q 010874 314 KKDVLFKLLRWRYPT-SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367 (498)
Q Consensus 314 ~~~vL~~ll~~~~~~-~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~A 367 (498)
++++|..+.+..... ...+.+++++.++++++|++|.++|||.||||+++|++|
T Consensus 206 ~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 206 TPDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred CHHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 999987664322211 234567899999999999999999999999999999975
|
Built to distinquish between the highly similar genes galU and galF |
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=295.24 Aligned_cols=243 Identities=22% Similarity=0.305 Sum_probs=193.2
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCCC--Cc
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNG--TN 169 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~~--~~ 169 (498)
+-|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+...+ |+.. .+
T Consensus 7 ~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~ 85 (302)
T PRK13389 7 KVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKR 85 (302)
T ss_pred cceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhh
Confidence 458999999999999999999999999999999 9999999999999999999999999999999996432 2100 00
Q ss_pred CC-----------CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeee--------cCH
Q 010874 170 FG-----------DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--------MDY 230 (498)
Q Consensus 170 ~~-----------~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~--------~dl 230 (498)
+. .....+.+..|. ...||++|++++..++. .++|+|++||++++ .|+
T Consensus 86 ~~~~~~~e~~~i~~~~~~i~~~~q~-------~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~~dl 152 (302)
T PRK13389 86 VKRQLLDEVQSICPPHVTIMQVRQG-------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQDNL 152 (302)
T ss_pred hhhHHHHhhhhccccCceEEEeecC-------CCCChHHHHHHHHHHcC------CCCEEEEeCcceecccccccccccH
Confidence 00 000122222232 23799999999988764 37899999999874 799
Q ss_pred HHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEECC-------CCCEEEEEeCCCccccccccccccccCCCccccccCC
Q 010874 231 MDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN-------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCP 303 (498)
Q Consensus 231 ~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d~-------~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (498)
.++++.|.+.+++ |+++.++++ +..||++.+|+ +++|..|.|||..... .+
T Consensus 153 ~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~s 210 (302)
T PRK13389 153 AEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------PS 210 (302)
T ss_pred HHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------Cc
Confidence 9999999888876 777777754 66899998863 3589999999974211 13
Q ss_pred cceeeeEEEEcHHHHHHHHHhhCC--CCCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhh
Q 010874 304 YVASMGVYVFKKDVLFKLLRWRYP--TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 304 ~l~~~GIYif~~~vL~~ll~~~~~--~~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll 372 (498)
+++++|+|+|++++|. +++...+ ..+.+++++++.+++++++++|.++|||.|||||++|.+|+..+-
T Consensus 211 ~~~~~GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 211 NLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred cEEEEEEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 6899999999999984 5654332 234567899999999999999999999999999999999999873
|
|
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=282.40 Aligned_cols=219 Identities=21% Similarity=0.301 Sum_probs=182.4
Q ss_pred EEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeE
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V 175 (498)
+|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+. .++ +
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~------~~~---~ 70 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDS------RFG---L 70 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhcc------cCC---c
Confidence 589999999999999999999999999999 999999999999999999999999999999998631 232 3
Q ss_pred EEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHH--HcCCCeEEEEEecCC
Q 010874 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV--DRDADITISCAAVGE 253 (498)
Q Consensus 176 ~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~--~~~ad~tv~~~~~~~ 253 (498)
.+....+.. +..||+++++.++.+++ .++|+|++||++++.|+.++++.|. +.++++|+...+.+.
T Consensus 71 ~i~~~~~~~------~~~g~~~~l~~~~~~~~------~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (221)
T cd06422 71 RITISDEPD------ELLETGGGIKKALPLLG------DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPG 138 (221)
T ss_pred eEEEecCCC------cccccHHHHHHHHHhcC------CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCC
Confidence 333322220 23699999999988874 2789999999999999999999998 456666666555543
Q ss_pred CCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCchh
Q 010874 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (498)
Q Consensus 254 ~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df~ 333 (498)
...||.+.+|++|+|..+.|||.. +++++|+|+|++++|..+.+. ....
T Consensus 139 --~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~~ 187 (221)
T cd06422 139 --HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFSL 187 (221)
T ss_pred --CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----cccH
Confidence 567899999988999999888742 478999999999999765432 2346
Q ss_pred hhhHHHHhhcCceEEEEEcceEeecCCHHHHHHH
Q 010874 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367 (498)
Q Consensus 334 ~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~A 367 (498)
+++++.+++++++.+|.+++||.|||||++|.+|
T Consensus 188 ~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 188 NPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 7899999999999999999999999999999875
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=282.15 Aligned_cols=241 Identities=17% Similarity=0.275 Sum_probs=190.2
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCCCCcC--CCC
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF--GDG 173 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~~~~~--~~~ 173 (498)
|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++|+.+++.+|+.+.+ ++....+ ..+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999999 9999999999999999999999999999999986432 1111111 001
Q ss_pred eEEEecccCCCC-C---CCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEE
Q 010874 174 FVEVLAATQTPG-E---SGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 174 ~V~v~~~~q~~~-~---~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
.+.+.... ... . .......||++|+++++.++. ..++|+|++||++++.|+.++++.|.+.++++|+++.
T Consensus 80 ~~~~~~~~-~~~~~~~~~~~~~~~~t~~al~~a~~~~~-----~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~ 153 (253)
T cd02524 80 RIELHNSD-IEDWKVTLVDTGLNTMTGGRLKRVRRYLG-----DDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAV 153 (253)
T ss_pred ceeeeccc-ccccceeecccCcccccHHHHHHHHHhcC-----CCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEe
Confidence 12222210 000 0 000012589999999998874 1278999999999999999999999999999998775
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCC
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~ 329 (498)
. ..+.||.+.+|++|+|..+.|||..+ +.++++|+|+|++++|..+ +.. .
T Consensus 154 ~----~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~l-~~~---~ 203 (253)
T cd02524 154 H----PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFDYI-DGD---D 203 (253)
T ss_pred c----CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHHhh-ccc---c
Confidence 3 24679999999999999999998642 1478999999999998644 332 4
Q ss_pred CchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhcc
Q 010874 330 NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (498)
Q Consensus 330 ~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~ 374 (498)
.++.+++++.+++++++++|.++|||.+|+|+++|.+|+..+...
T Consensus 204 ~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 204 TVFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred chhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 466779999999999999999999999999999999999877543
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=277.80 Aligned_cols=232 Identities=26% Similarity=0.398 Sum_probs=191.5
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+ +|+. .
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~-----~~~~-~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGS-----RFGV-R 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchh-----hcCC-e
Confidence 7899999999999999999999999999999 9999999999999999999999999899988885321 2321 2
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
+.++. +. +..||+++++.+..++. .++|++++||++++.++.++++.|.+.++++++++.+.++
T Consensus 74 i~~~~--~~-------~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (236)
T cd04189 74 ITYIL--QE-------EPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED- 137 (236)
T ss_pred EEEEE--CC-------CCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC-
Confidence 33332 21 13699999999988773 3689999999999999999999999999999998888765
Q ss_pred CCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC--CCch
Q 010874 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (498)
Q Consensus 255 ~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~--~~df 332 (498)
+..||++.+|+ ++|..+.|||..+. +.++++|+|+|++++|..+ +...+. .+.+
T Consensus 138 -~~~~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~ 193 (236)
T cd04189 138 -PRRFGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGELE 193 (236)
T ss_pred -cccceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeEE
Confidence 46789888874 59999999986432 2578999999999998754 332222 2344
Q ss_pred hhhhHHHHhhc-CceEEEEEcceEeecCCHHHHHHHHHHhhc
Q 010874 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 333 ~~dii~~~i~~-~~I~~~~~~~~w~dIgt~~dy~~An~~ll~ 373 (498)
.+++++.++++ .+|.+|.++++|.|||||++|.+||+.+++
T Consensus 194 ~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 194 ITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred HHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 57899998866 569999999999999999999999999886
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=267.39 Aligned_cols=223 Identities=25% Similarity=0.424 Sum_probs=185.2
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+|+.+.+ .++. .+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~-----~~~~-~~~ 73 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGY-----RGGI-RIY 73 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcc-----ccCc-eEE
Confidence 69999999999999999999999999999 9999999999999999999999999998988886322 1221 122
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCCCC
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (498)
+... +. ..|++++++.++.+++ .++|++++||++++.++.++++.|++.++++++++.+.++ .
T Consensus 74 ~~~~-~~--------~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~ 136 (223)
T cd06915 74 YVIE-PE--------PLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--A 136 (223)
T ss_pred EEEC-CC--------CCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--C
Confidence 2221 11 2699999999987763 3789999999999999999999999888889988887654 4
Q ss_pred CCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCchhhhh
Q 010874 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (498)
Q Consensus 257 ~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df~~di 336 (498)
..|+.+.+|++|+|..+.|||... .++++++|+|+|++++|..+... ..++.+++
T Consensus 137 ~~~~~v~~d~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~ 191 (223)
T cd06915 137 SRYGNVTVDGDGRVIAFVEKGPGA---------------------APGLINGGVYLLRKEILAEIPAD----AFSLEADV 191 (223)
T ss_pred CcceeEEECCCCeEEEEEeCCCCC---------------------CCCcEEEEEEEECHHHHhhCCcc----CCChHHHH
Confidence 578999999889999999987643 13688999999999999754222 23456789
Q ss_pred HHHHhhcCceEEEEEcceEeecCCHHHHHHHH
Q 010874 337 IPAAIMEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (498)
Q Consensus 337 i~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An 368 (498)
++.+++++++.+|.++++|.||+|++||+.|+
T Consensus 192 ~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 192 LPALVKRGRLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HHHHHhcCcEEEEecCCeEEecCCHHHHHhhC
Confidence 99999888999999999999999999999873
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=264.84 Aligned_cols=217 Identities=30% Similarity=0.525 Sum_probs=182.0
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.+ .++ ..+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~-----~~~-~~i~ 73 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGS-----KFG-VNIE 73 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChh-----hcC-ceEE
Confidence 69999999999999999999999999999 9999999999999999999999999888988885321 122 1233
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCCCC
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (498)
++. +.. ..|++++++.++.++. .++|+|++||++++.|+.++++.|.++++++|+++.+.+ .+
T Consensus 74 ~~~--~~~-------~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 136 (217)
T cd04181 74 YVV--QEE-------PLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DP 136 (217)
T ss_pred EEe--CCC-------CCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CC
Confidence 332 221 2699999999987762 479999999999999999999999999999999988776 36
Q ss_pred CCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCchhhhh
Q 010874 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (498)
Q Consensus 257 ~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df~~di 336 (498)
.+|+.+.+|++|+|..+.|||.... ..++++|+|+|++++|. +++.......++..++
T Consensus 137 ~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~ 194 (217)
T cd04181 137 SRYGVVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTDA 194 (217)
T ss_pred CcceEEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHHH
Confidence 6899999998899999999987532 25789999999999885 5554322345778899
Q ss_pred HHHHhhcCceEEEEEcceEeecC
Q 010874 337 IPAAIMEHDVQAYIFRDYWEDIG 359 (498)
Q Consensus 337 i~~~i~~~~I~~~~~~~~w~dIg 359 (498)
++.+++++++++|.++|+|.|||
T Consensus 195 ~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 195 IPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHhcCCEEEEEcCCEEecCC
Confidence 99999999999999999999986
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=261.61 Aligned_cols=219 Identities=24% Similarity=0.456 Sum_probs=177.8
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+. ..++. .+.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-----~~~~~-~i~ 73 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG-----SKFGV-NIS 73 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc-----cccCc-cEE
Confidence 69999999999999999999999999999 999999999999999999999999988888887531 12321 133
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCCCC
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (498)
++. +.. ..||+++++.+.... .++|+|++||++++.++.++++.|++.++++++++.+... .
T Consensus 74 ~~~--~~~-------~~g~~~~l~~~~~~~-------~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~ 135 (220)
T cd06426 74 YVR--EDK-------PLGTAGALSLLPEKP-------TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV--Q 135 (220)
T ss_pred EEE--CCC-------CCcchHHHHHHHhhC-------CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--C
Confidence 322 211 269999997765332 4789999999999999999999999988999988876543 3
Q ss_pred CCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCchhhhh
Q 010874 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (498)
Q Consensus 257 ~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df~~di 336 (498)
..||++..|+ |+|..+.|||... .++++|+|+|+++++..+ + +..+....++
T Consensus 136 ~~~g~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~i-~---~~~~~~l~~~ 187 (220)
T cd06426 136 VPYGVVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDLI-P---KNEFFDMPDL 187 (220)
T ss_pred CcceEEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhhc-C---CCCCcCHHHH
Confidence 5699999986 8999999987632 468999999999998654 2 1222235788
Q ss_pred HHHHhhc-CceEEEEEcceEeecCCHHHHHHHH
Q 010874 337 IPAAIME-HDVQAYIFRDYWEDIGTIKSFYEAN 368 (498)
Q Consensus 337 i~~~i~~-~~I~~~~~~~~w~dIgt~~dy~~An 368 (498)
++.++++ .++.+|.++++|.||||+++|.+||
T Consensus 188 ~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 188 IEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 9998877 4699999999999999999999985
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.5e-32 Score=258.93 Aligned_cols=206 Identities=17% Similarity=0.267 Sum_probs=161.0
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCCCCcCCCC
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDG 173 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~~~~~~~~ 173 (498)
++|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+ |+.. +...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~--~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPK--SSLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccccc--cCcc
Confidence 5899999999999999999999999999999 9999999999999999999999999999999997543 2211 1011
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHH-----cCCCeEEEE
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD-----RDADITISC 248 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~-----~~ad~tv~~ 248 (498)
.+.++...+ ..|++++++..... ....++|++++||++++.|+.++++.|++ +++++|+++
T Consensus 78 ~i~~~~~~~---------~~~~~~al~~~~~~-----~~~~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~ 143 (217)
T cd04197 78 IVIIIMSED---------CRSLGDALRDLDAK-----GLIRGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVL 143 (217)
T ss_pred eEEEEeCCC---------cCccchHHHHHhhc-----cccCCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEE
Confidence 244433211 25899999765321 01237899999999999999999999988 488999999
Q ss_pred EecCCCC----CCCceEEEECCC-CCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHH
Q 010874 249 AAVGESR----ASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (498)
Q Consensus 249 ~~~~~~~----~~~~g~v~~d~~-grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL 318 (498)
.++++++ ..+++++.+|++ ++|+.|.|||..+.....+++.+++.-.+.. .+++++.++|+|+|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~-~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 144 KEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEV-EIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcE-EEECCceecCEEEeCCCCC
Confidence 8877543 224678888866 8999999999876544455666666544443 4578999999999999864
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=252.70 Aligned_cols=249 Identities=22% Similarity=0.316 Sum_probs=205.2
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCC----
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGN---- 166 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~---- 166 (498)
++-++|||+|||.||||.|.|+..||-||||-+| |+|+|+++.+..+||++|++||+.+...|.+|+...| +..
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 4567999999999999999999999999999999 9999999999999999999999999999999987654 321
Q ss_pred -CC--------cCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeec---CHHHHH
Q 010874 167 -GT--------NFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFI 234 (498)
Q Consensus 167 -~~--------~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~---dl~~ll 234 (498)
+. +. ...+.+.+..|.. ++|.|||+.+|..++. +++|.|+.||.++.. .+.+++
T Consensus 81 ~~K~~~L~~v~~i-~~~~~i~~vRQ~e-------~~GLGhAVl~A~~~vg------~EpFaVlL~Ddl~~~~~~~l~qmi 146 (291)
T COG1210 81 RGKRELLEEVRSI-PPLVTISFVRQKE-------PLGLGHAVLCAKPFVG------DEPFAVLLPDDLVDSEKPCLKQMI 146 (291)
T ss_pred hCHHHHHHHHHhc-ccCceEEEEecCC-------CCcchhHHHhhhhhcC------CCceEEEeCCeeecCCchHHHHHH
Confidence 11 01 1234555555643 4799999999999985 589999999998865 378899
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCceEEE----ECCC-CCEEEEEeCCCccccccccccccccCCCccccccCCcceeee
Q 010874 235 QSHVDRDADITISCAAVGESRASDYGLVK----IDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMG 309 (498)
Q Consensus 235 ~~h~~~~ad~tv~~~~~~~~~~~~~g~v~----~d~~-grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 309 (498)
+.+.+.+.. ++.+.+++.++.++||++. .+.+ .+|..+.|||+.... .|+++-.|
T Consensus 147 ~~ye~~g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~G 206 (291)
T COG1210 147 ELYEETGGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVG 206 (291)
T ss_pred HHHHHhCCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------Ccceeeee
Confidence 999888774 6777888877789999998 4333 489999999976542 46899999
Q ss_pred EEEEcHHHHHHHHHhhCCC--CCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccCC
Q 010874 310 VYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESP 376 (498)
Q Consensus 310 IYif~~~vL~~ll~~~~~~--~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~ 376 (498)
-|+|+|++|. +|++..+. .+-.++|.+..+++...+++|.++|-.+|+|++..|.+|+.++..+.+
T Consensus 207 RYil~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~~ 274 (291)
T COG1210 207 RYVLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRRP 274 (291)
T ss_pred eeecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhCh
Confidence 9999999997 56765443 233478999999999999999999999999999999999999876543
|
|
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=244.92 Aligned_cols=198 Identities=47% Similarity=0.782 Sum_probs=161.0
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCCCCcCCCCeE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFV 175 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~~~~~~~~~V 175 (498)
|||||||.||||+|||..+||+|+||+|+||||+|+++++.++|+++|+|+++++.+++.+|+.+.. |+. +.....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDL--DRKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccC--CCCCCCE
Confidence 6999999999999999999999999999878999999999999999999999999999999986432 221 1111225
Q ss_pred EEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCCC
Q 010874 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESR 255 (498)
Q Consensus 176 ~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~ 255 (498)
.++...+.. .+.|.+||++|++.+..++++ ...++|+|++||++++.++.++++.|+++++++|+++.
T Consensus 79 ~~~~~~~~~---~~~~~~Gta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQRK---GGDWYRGTADAIYQNLDYIER---SDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccCC---CCCcccCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 555433311 123568999999999988852 12478999999999999999999999998888887664
Q ss_pred CCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC-CCCchhh
Q 010874 256 ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-TSNDFGS 334 (498)
Q Consensus 256 ~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~-~~~df~~ 334 (498)
+++|+|+|++++|..+++...+ ..+++.+
T Consensus 147 --------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~ 176 (200)
T cd02508 147 --------------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGK 176 (200)
T ss_pred --------------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHH
Confidence 2679999999999777765322 3457789
Q ss_pred hhHHHHhhcCceEEEEEcceEeec
Q 010874 335 EIIPAAIMEHDVQAYIFRDYWEDI 358 (498)
Q Consensus 335 dii~~~i~~~~I~~~~~~~~w~dI 358 (498)
|+++.+++++++++|.++|||.||
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 999999999999999999999986
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=249.50 Aligned_cols=222 Identities=17% Similarity=0.246 Sum_probs=173.0
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+ + .+ +.
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~-~------~~---~~ 69 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKK-Y------PN---IK 69 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhc-c------CC---eE
Confidence 69999999999999999999999999999 99999999999999999999999999999888852 1 11 45
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCCCC
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (498)
++...+.. ..|++++++.++.+++ ++|++++||++++. ++++.|.+.++++|+++.+..+...
T Consensus 70 ~~~~~~~~-------~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (229)
T cd02523 70 FVYNPDYA-------ETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWE 132 (229)
T ss_pred EEeCcchh-------hhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCccccc
Confidence 55433321 2699999999987762 78999999999865 5677888888899998877444334
Q ss_pred CCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHh---hCC--CCCc
Q 010874 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW---RYP--TSND 331 (498)
Q Consensus 257 ~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~---~~~--~~~d 331 (498)
..++....| ++++..+.|||..+. ....+++|+|+|++++|..+.+. ..+ ...+
T Consensus 133 ~~~~~~~~~-~~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~ 191 (229)
T cd02523 133 DEYVKDLDD-AGVLLGIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVNL 191 (229)
T ss_pred ccceeeecC-ccceEeecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhcccccc
Confidence 456654444 378999999886542 12578999999999998765432 111 2456
Q ss_pred hhhhhHHHHhhcCc--eEEEEEcceEeecCCHHHHHHHH
Q 010874 332 FGSEIIPAAIMEHD--VQAYIFRDYWEDIGTIKSFYEAN 368 (498)
Q Consensus 332 f~~dii~~~i~~~~--I~~~~~~~~w~dIgt~~dy~~An 368 (498)
+.+++++.++++.+ ++.+.. ++|.||+|+++|++|+
T Consensus 192 ~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 192 YYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred cHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 77899999988444 445554 8999999999999874
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=245.78 Aligned_cols=222 Identities=18% Similarity=0.243 Sum_probs=168.9
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
.||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|++++.. ....|+.+.+ ... .. .+.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~-~~~-~~---~~~ 73 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESL-KLL-AP---NAT 73 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHH-HHh-CC---CCE
Confidence 48999999999999999999999999999 99999999999999999999986432 2223332221 100 00 123
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCCCC
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~ 256 (498)
++...+. ..||++++..++.++. ..++|+|++||++++.++.++++.|.+.+.+.++++...+ .
T Consensus 74 i~~~~~~--------~~g~~~~l~~a~~~l~-----~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 137 (231)
T cd04183 74 VVELDGE--------TLGAACTVLLAADLID-----NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS---H 137 (231)
T ss_pred EEEeCCC--------CCcHHHHHHHHHhhcC-----CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---C
Confidence 3222111 2699999999987773 2378999999999999999999999887777777666542 3
Q ss_pred CCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHH-HHHHHHHhhC-----CCCC
Q 010874 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLFKLLRWRY-----PTSN 330 (498)
Q Consensus 257 ~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~-vL~~ll~~~~-----~~~~ 330 (498)
.+|+.+.+|++|+|..+.||+.. +.++++|+|+|+++ .|.+.++... +...
T Consensus 138 ~~~~~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~ 194 (231)
T cd04183 138 PRWSYVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGE 194 (231)
T ss_pred CCeEEEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccCc
Confidence 57999999999999999988531 24689999999997 6655555311 1123
Q ss_pred chhhhhHHHHhhcC-ceEEEEE-cceEeecCCHHHH
Q 010874 331 DFGSEIIPAAIMEH-DVQAYIF-RDYWEDIGTIKSF 364 (498)
Q Consensus 331 df~~dii~~~i~~~-~I~~~~~-~~~w~dIgt~~dy 364 (498)
.+.+++++.+++++ +|.+|.+ +++|.|||||++|
T Consensus 195 ~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 195 FYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred EEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 35678999999775 6999999 6999999999987
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=236.70 Aligned_cols=233 Identities=18% Similarity=0.288 Sum_probs=167.8
Q ss_pred eEEEEEeCCCCCcccCCcc-CCCccceecCC-cchhHHHHHHHHHhc-CCCeEEEEeccCchh-HHHHHHhhccCCCCcC
Q 010874 95 VAAIILGGGAGTKLFPLTL-RAATPAVPVAG-CYRLIDIPMSNCINS-GINKIFVLTQFNSAS-LNRHIARTYFGNGTNF 170 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~-~~PK~LlpI~G-~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~~~-l~~hl~~~~~~~~~~~ 170 (498)
|++||||||.||||+|||. .+||+|+|++| + |||+++++++.+. ++++|+|+++++... +.+++.+ .
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~-~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~------- 71 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDK-SLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-G------- 71 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCC-cHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-c-------
Confidence 6899999999999999996 79999999999 6 9999999999998 599999999976543 4344431 0
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeee--cCHHHHHHHHHH---cCCCeE
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVD---RDADIT 245 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~--~dl~~ll~~h~~---~~ad~t 245 (498)
. ..+.++.... .+||++|+..+..++.. ....+.++|++||+++. .+|.++++.|.+ .++.+|
T Consensus 72 ~-~~~~ii~ep~---------~~gTa~ai~~a~~~~~~--~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt 139 (274)
T cd02509 72 L-PEENIILEPE---------GRNTAPAIALAALYLAK--RDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVT 139 (274)
T ss_pred C-CCceEEECCC---------CCCcHHHHHHHHHHHHh--cCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEE
Confidence 0 1244543222 26999999999888752 12346799999999886 567777776554 677788
Q ss_pred EEEEecCCCCCCCceEEEECCCC-----CEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHH
Q 010874 246 ISCAAVGESRASDYGLVKIDNMG-----RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (498)
Q Consensus 246 v~~~~~~~~~~~~~g~v~~d~~g-----rV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ 320 (498)
+.+.+.+. .+.||++..+++. +|..|.|||.....+.+ .....+++|+|+|+|+++.|.+
T Consensus 140 ~gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------~~~g~~~wNsGiyi~~~~~l~~ 204 (274)
T cd02509 140 FGIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEY-------------LESGNYLWNSGIFLFRAKTFLE 204 (274)
T ss_pred EEeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHH-------------hhcCCeEEECceeeeeHHHHHH
Confidence 88877643 4689999998653 89999999975432111 0112468999999999998887
Q ss_pred HHHhhCCCCC----------------chhhhhHHH--------Hh--hcCceEEEEEcceEeecCCHHH
Q 010874 321 LLRWRYPTSN----------------DFGSEIIPA--------AI--MEHDVQAYIFRDYWEDIGTIKS 363 (498)
Q Consensus 321 ll~~~~~~~~----------------df~~dii~~--------~i--~~~~I~~~~~~~~w~dIgt~~d 363 (498)
.++...|... .+..+.++. ++ +..++.+...+..|-|+|++++
T Consensus 205 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 205 ELKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 7775443210 111222332 12 2267888888889999999875
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=230.33 Aligned_cols=204 Identities=19% Similarity=0.310 Sum_probs=160.2
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|+|||||||.|+||+|+|...||+|+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.++... +.+ ..
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~-~~~-~~ 77 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSL-SSK-MI 77 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccc-cCC-ce
Confidence 6899999999999999999999999999999 99999999999999999999999999999999976543110 111 12
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHH--HHHcCCCeEEEEEecC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS--HVDRDADITISCAAVG 252 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~--h~~~~ad~tv~~~~~~ 252 (498)
+.++...+. ...||+++++++.+++. ++|+|++||+++++|+.++++. +...++++|+++....
T Consensus 78 v~~~~~~~~-------~~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~ 143 (216)
T cd02507 78 VDVITSDLC-------ESAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLAS 143 (216)
T ss_pred EEEEEccCC-------CCCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEecc
Confidence 444443332 13799999999987663 7899999999999999999976 5556777777776544
Q ss_pred CCC-------CCCceEEEECCC---CCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHH
Q 010874 253 ESR-------ASDYGLVKIDNM---GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (498)
Q Consensus 253 ~~~-------~~~~g~v~~d~~---grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL 318 (498)
... ..+++++.+|++ .+++++.|++.... .+.+..+++.-.|+ ...++++.++|+|+|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~~-~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 144 PPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDL--ELIIRKSLLSKHPN-VTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcCc--ccccCHHHHhcCCC-EEEEcCcccccEEEecCcCC
Confidence 322 457899999987 68888888876542 34456667765554 35688999999999999864
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=220.97 Aligned_cols=221 Identities=22% Similarity=0.338 Sum_probs=173.0
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
|||||||.|+||+| .+||+|+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+++.+ ++ ++
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~--------~~---~~ 65 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN--------PN---VE 65 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC--------CC---cE
Confidence 69999999999996 689999999999 99999999999999999999999988888777641 22 34
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
++.... ..|++++++.+++++++ ..++|+++.||+ +...++.++++.|.+.++++++.+.+.++
T Consensus 66 ~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~- 131 (229)
T cd02540 66 FVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED- 131 (229)
T ss_pred EEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC-
Confidence 443221 25999999999988741 247899999998 33567899999998877888887776654
Q ss_pred CCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC---CCCc
Q 010874 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSND 331 (498)
Q Consensus 255 ~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~---~~~d 331 (498)
+..|+.+..|++|+|..+.|||...... ...+.+++|+|+|+++.|.++++.... ....
T Consensus 132 -p~~~~~~~~~~~~~v~~~~ek~~~~~~~-----------------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~ 193 (229)
T cd02540 132 -PTGYGRIIRDGNGKVLRIVEEKDATEEE-----------------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEY 193 (229)
T ss_pred -CCCccEEEEcCCCCEEEEEECCCCChHH-----------------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCcE
Confidence 5679988888889999999987422100 012578999999999887777765432 2345
Q ss_pred hhhhhHHHHhhc-CceEEEEEcce--EeecCCHHHH
Q 010874 332 FGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSF 364 (498)
Q Consensus 332 f~~dii~~~i~~-~~I~~~~~~~~--w~dIgt~~dy 364 (498)
+++++++.++++ .+|+++.++|| |+.|+||.++
T Consensus 194 ~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 194 YLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 678999999976 57999999877 6778888763
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-26 Score=220.66 Aligned_cols=201 Identities=21% Similarity=0.300 Sum_probs=151.6
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCc-hhHHHHHHhhccCCCCcCCCC
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~-~~l~~hl~~~~~~~~~~~~~~ 173 (498)
|+|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|.++|+++|+|++++.. +.+.+++.+..+... .. .
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~--~~-~ 76 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLK--QK-L 76 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccC--cc-e
Confidence 6899999999999999999999999999999 99999999999999999999999765 456666642112111 01 1
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCC
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (498)
.+.+.. +. ...||+++++.+...+ .++|+|++||++++.++.++++.|++.++.+|+++.+...
T Consensus 77 ~~~~~~--~~-------~~~gt~~al~~~~~~i-------~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~ 140 (214)
T cd04198 77 DEVTIV--LD-------EDMGTADSLRHIRKKI-------KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPV 140 (214)
T ss_pred eEEEec--CC-------CCcChHHHHHHHHhhc-------CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCC
Confidence 122221 11 1369999999998665 3789999999999999999999999999999999887542
Q ss_pred C----------C-CCCceEEEECC-CCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHH
Q 010874 254 S----------R-ASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (498)
Q Consensus 254 ~----------~-~~~~g~v~~d~-~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL 318 (498)
. + ...+.++.+|+ ++|++.+..... ..+.+.++.++|.-.|+ ...+.++.++++|+|++++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~--~~~~~~~~~~~l~~~~~-~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 141 SSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEED--LDEDLELRKSLLKRHPR-VTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred cccccCCcccccCCCCCceEEEcCCCCEEEEECCHHH--hhhhhhHHHHHHHhCCC-EEEEcCcccceEEEEEeeeC
Confidence 1 1 23567777775 578888865322 22334556677765554 35578999999999998764
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=230.84 Aligned_cols=240 Identities=16% Similarity=0.282 Sum_probs=165.2
Q ss_pred eEEEEEeCCCCCcccCCccC-CCccceecCC-cchhHHHHHHHHHhcCCCeEEEEeccCch-hHHHHHHhhccCCCCcCC
Q 010874 95 VAAIILGGGAGTKLFPLTLR-AATPAVPVAG-CYRLIDIPMSNCINSGINKIFVLTQFNSA-SLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~-~PK~LlpI~G-~~pLId~~L~~l~~sGi~~I~Vv~~~~~~-~l~~hl~~~~~~~~~~~~ 171 (498)
|.+||||||.||||+|||.. +||+|+|++| + |||+|+++.|...++++++|+++.... .+.+.+. .+ +
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~-~~-------~ 71 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLR-EI-------G 71 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHH-Hc-------C
Confidence 67999999999999999997 9999999977 7 999999999999999999999985443 2333442 21 1
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeec--CHHHHHHHH---HHcCCCeEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM--DYMDFIQSH---VDRDADITI 246 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~--dl~~ll~~h---~~~~ad~tv 246 (498)
.....++.... .+|||+|+..+..++.... ...+.++|++||+++.. +|.++++.+ .+.++.+|+
T Consensus 72 ~~~~~~i~Ep~---------~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtl 141 (468)
T TIGR01479 72 KLASNIILEPV---------GRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTF 141 (468)
T ss_pred CCcceEEeccc---------ccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 11122333222 2699999988776663100 12345999999987653 488888765 344566666
Q ss_pred EEEecCCCCCCCceEEEECC------CCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHH
Q 010874 247 SCAAVGESRASDYGLVKIDN------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (498)
Q Consensus 247 ~~~~~~~~~~~~~g~v~~d~------~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ 320 (498)
...+... .+.||++..++ .++|..|.|||....... ......+++|+|||+|+++.|.+
T Consensus 142 gi~p~~p--~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~-------------~l~~g~~~wNsGif~~~~~~ll~ 206 (468)
T TIGR01479 142 GIVPTHP--ETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQA-------------YLESGDYYWNSGMFLFRASRYLA 206 (468)
T ss_pred EecCCCC--CCCceEEEeCCccCCCCceEEeEEEECCChHHHHH-------------HHhcCCeEEEeeEEEEEHHHHHH
Confidence 6655443 46899999973 268999999997543211 01112478999999999887776
Q ss_pred HHHhhCCCC-----------------CchhhhhHH---------HHhh-cCceEEEEEcceEeecCCHHHHHHHH
Q 010874 321 LLRWRYPTS-----------------NDFGSEIIP---------AAIM-EHDVQAYIFRDYWEDIGTIKSFYEAN 368 (498)
Q Consensus 321 ll~~~~~~~-----------------~df~~dii~---------~~i~-~~~I~~~~~~~~w~dIgt~~dy~~An 368 (498)
.++...|+. ..+..++++ .+++ ..++++...+.+|.|+|++++++++-
T Consensus 207 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 207 ELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 665543311 011123444 1122 25788888888999999999999874
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-23 Score=201.75 Aligned_cols=234 Identities=17% Similarity=0.201 Sum_probs=160.6
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
++.+||||+|.++||. +|+|+|++|+ |||+|+++.|.++|+++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~--------~~-- 62 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVEA--------FG-- 62 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH--------cC--
Confidence 4789999999999994 5999999999 999999999999999999998864 556666641 22
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeEEEEEec
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
+.++...+. +..||+++...+. .++ ....+.+++++||+ +. ..++.++++.|.+.++++++++.+.
T Consensus 63 -~~v~~~~~~-------~~~gt~~~~~~~~-~~~---~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~ 130 (245)
T PRK05450 63 -GEVVMTSPD-------HPSGTDRIAEAAA-KLG---LADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPI 130 (245)
T ss_pred -CEEEECCCc-------CCCchHHHHHHHH-hcC---CCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeec
Confidence 233322221 1357776554332 221 01235699999999 54 4568899999887777777777666
Q ss_pred CC----CCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC
Q 010874 252 GE----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (498)
Q Consensus 252 ~~----~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~ 327 (498)
.+ ..++.++++ +|++|+|++|.|||..+.... .++. ...+++.++|+|+|++++|..+.+. .+
T Consensus 131 ~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~----------~~~~-~~~~~~~~~Giy~~~~~~l~~~~~~-~~ 197 (245)
T PRK05450 131 HDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDA----------FADS-APTPVYRHIGIYAYRRGFLRRFVSL-PP 197 (245)
T ss_pred CCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCc----------cccc-cCccccEEEEEEecCHHHHHHHHhC-CC
Confidence 32 234567765 888999999999985331100 0000 0124799999999999999877553 22
Q ss_pred CCCchh--hhhHHHHhhcCceEEEEEcc-eEeecCCHHHHHHHHHHh
Q 010874 328 TSNDFG--SEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 328 ~~~df~--~dii~~~i~~~~I~~~~~~~-~w~dIgt~~dy~~An~~l 371 (498)
...+.. .++++.+-++.+|+++.+++ +|.|||||+||..|+..+
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 198 SPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred CccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 211111 11223233456899999996 999999999999999764
|
|
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-23 Score=200.89 Aligned_cols=226 Identities=16% Similarity=0.260 Sum_probs=157.2
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
+.+||||+|.|+||. ||+|+|++|+ |||+|+++++.++ |+++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~--------~~-- 62 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES--------FG-- 62 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH--------cC--
Confidence 579999999999996 5999999999 9999999999998 99999998864 566666641 22
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHc-CCCeEEEEEe
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDR-DADITISCAA 250 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~-~ad~tv~~~~ 250 (498)
+.++...+. +..||++ +..+...++ ...+.||+++||+ ++ ..++..+++.|.+. ++++++++.+
T Consensus 63 -~~~~~~~~~-------~~~gt~~-~~~~~~~~~----~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~ 129 (239)
T cd02517 63 -GKVVMTSPD-------HPSGTDR-IAEVAEKLD----ADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATP 129 (239)
T ss_pred -CEEEEcCcc-------cCchhHH-HHHHHHhcC----CCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 333332221 1258876 444544442 1136799999997 44 56789999988776 7888888887
Q ss_pred cCCCC----CCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhC
Q 010874 251 VGESR----ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (498)
Q Consensus 251 ~~~~~----~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~ 326 (498)
.+++. ...|+ +..|++|+|..|.+||...... |. ...+.++++|+|+|++++|..+.+..
T Consensus 130 ~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~--~~~~~~~~~Giy~~~~~~~~~~~~~~- 193 (239)
T cd02517 130 ISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SS--EDFPYYKHIGIYAYRRDFLLRFAALP- 193 (239)
T ss_pred cCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CC--CCCceeEEEEEEEECHHHHHHHHhCC-
Confidence 75421 22334 5577789999998876422100 00 00136899999999999998765431
Q ss_pred CCCCchhhhhHH--HHhhc-CceEEEEEcceEeecCCHHHHHHHHH
Q 010874 327 PTSNDFGSEIIP--AAIME-HDVQAYIFRDYWEDIGTIKSFYEANM 369 (498)
Q Consensus 327 ~~~~df~~dii~--~~i~~-~~I~~~~~~~~w~dIgt~~dy~~An~ 369 (498)
+...+ ..+.++ .++++ .+++++..+++|.|||||++|..|++
T Consensus 194 ~~~~~-~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 194 PSPLE-QIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred Cchhh-hhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 11111 223333 34544 45999999999999999999999974
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=191.29 Aligned_cols=225 Identities=15% Similarity=0.236 Sum_probs=151.6
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEe-ccCchhHHHHHHhhccCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLT-QFNSASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~-~~~~~~l~~hl~~~~~~~~~~~ 170 (498)
|..|+|||||||.|+||.| ..||+|+.|+|+ +||+|+|++|.+.|+++++||+ +|+.+.+..++. .| .|
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~-~~-----~~ 70 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLK-KY-----PF 70 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHh-cC-----Cc
Confidence 4679999999999999999 899999999999 9999999999999999999999 888887777764 33 22
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
..+++...... ..+|+.++..+.+++. +.|++++||++|...+ ++...+.... ++.+..
T Consensus 71 ---~~~iv~N~~y~-------ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~---~e~l~~a~~~-~li~d~ 129 (239)
T COG1213 71 ---NAKIVINSDYE-------KTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSI---LERLLEAPGE-GLIVDR 129 (239)
T ss_pred ---ceEEEeCCCcc-------cCCceeEEeeehhhhc-------CcEEEEeCCEeecHHH---HHHHHhCcCC-cEEEec
Confidence 14555443322 1366899999988775 6799999999998654 3344443332 333332
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCC
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~ 330 (498)
.+......-.....+++|++..+..+-.. .+..++|++.|+++++..+.+-.....
T Consensus 130 ~~~~~~~~ea~kv~~e~G~i~~igK~l~e-----------------------~~~e~iGi~~l~~~i~~~~~~~~~e~~- 185 (239)
T COG1213 130 RPRYVGVEEATKVKDEGGRIVEIGKDLTE-----------------------YDGEDIGIFILSDSIFEDTYELLVERS- 185 (239)
T ss_pred cccccccCceeEEEecCCEEehhcCCccc-----------------------ccceeeeeEEechHHHHHHHHHHhhhh-
Confidence 22111111122334468999988755442 245789999999998865544321111
Q ss_pred chhhhhHHHHhhcCceEEEEE-----cceEeecCCHHHHHHHHHHhhcc
Q 010874 331 DFGSEIIPAAIMEHDVQAYIF-----RDYWEDIGTIKSFYEANMALTKE 374 (498)
Q Consensus 331 df~~dii~~~i~~~~I~~~~~-----~~~w~dIgt~~dy~~An~~ll~~ 374 (498)
.+ .+....+...+.+-.. ..+|+||+||+|+.+|.+.+...
T Consensus 186 ~~---~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~ 231 (239)
T COG1213 186 EY---DYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPN 231 (239)
T ss_pred hH---HHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHHH
Confidence 11 1222222222222222 25799999999999999988754
|
|
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=188.89 Aligned_cols=225 Identities=17% Similarity=0.290 Sum_probs=153.3
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
++.|||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++. . ++
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~-~-------~~- 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVE-A-------FG- 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHH-H-------cC-
Confidence 4789999999999995 4999999999 9999999999998 89999999864 56766664 2 22
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCC-CeEEEEE
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDA-DITISCA 249 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~a-d~tv~~~ 249 (498)
++++...+. +..|++. +..+...+ ..+.|+++.||+ +...++.++++.|.+.+. ++++++.
T Consensus 64 --~~v~~~~~~-------~~~g~~~-~~~a~~~~------~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~ 127 (238)
T PRK13368 64 --GKVVMTSDD-------HLSGTDR-LAEVMLKI------EADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCA 127 (238)
T ss_pred --CeEEecCcc-------CCCccHH-HHHHHHhC------CCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEE
Confidence 222222221 1246764 55554333 247899999996 556789999998876543 5666666
Q ss_pred ecCC-CC---CCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhh
Q 010874 250 AVGE-SR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (498)
Q Consensus 250 ~~~~-~~---~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~ 325 (498)
+.+. .+ +..+++ .++++|++..+.|+|...... . ....++.++|+|+|++++|..+ +..
T Consensus 128 ~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~~--------------~-~~~~~~~n~giy~~~~~~l~~~-~~~ 190 (238)
T PRK13368 128 PISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRRD--------------G-ESARYLKHVGIYAFRRDVLQQF-SQL 190 (238)
T ss_pred EcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCCC--------------C-CCCceeEEEEEEEeCHHHHHHH-HcC
Confidence 5543 11 334444 456679999998765321100 0 0013588999999999999864 321
Q ss_pred CCCCC-chhh-hhHHHHh-hcCceEEEEEcceEeecCCHHHHHHHHHH
Q 010874 326 YPTSN-DFGS-EIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (498)
Q Consensus 326 ~~~~~-df~~-dii~~~i-~~~~I~~~~~~~~w~dIgt~~dy~~An~~ 370 (498)
.+... ++.. +++ .++ ...+++++..+++|.|||||+||..|+..
T Consensus 191 ~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 191 PETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 11111 1222 455 454 44569999988999999999999999764
|
|
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-20 Score=193.07 Aligned_cols=242 Identities=17% Similarity=0.281 Sum_probs=159.9
Q ss_pred ceEEEEEeCCCCCcccCCccC-CCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchh-HHHHHHhhccCCCCcCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLR-AATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSAS-LNRHIARTYFGNGTNFG 171 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~-~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~-l~~hl~~~~~~~~~~~~ 171 (498)
+|.+||||||.||||||+|.. +||+|+|++|..|||+++++.+...++.+.+|+|+..... +.+++. . +.
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~-~-------~~ 76 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLR-Q-------LN 76 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHH-h-------cC
Confidence 389999999999999999998 7999999965339999999999988888888888865543 333442 1 11
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCC-CCeEEEEcCceeeecC--HHHHHHHHH---HcCCCeE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRN-IENVAILCGDHLYRMD--YMDFIQSHV---DRDADIT 245 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~-~e~~Lvl~GD~l~~~d--l~~ll~~h~---~~~ad~t 245 (498)
.....++.+... ++||.|+..+..++... ... ..-++|+++||+.... |.+.++... +.+.-+|
T Consensus 77 ~~~~~ii~EP~~---------rnTApaialaa~~~~~~-~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt 146 (478)
T PRK15460 77 KLTENIILEPAG---------RNTAPAIALAALAAKRH-SPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVT 146 (478)
T ss_pred CccccEEecCCC---------CChHHHHHHHHHHHHHh-cCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 000134432221 58999988776555421 111 3568899999987543 555554432 2355556
Q ss_pred EEEEecCCCCCCCceEEEECCC---------CCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHH
Q 010874 246 ISCAAVGESRASDYGLVKIDNM---------GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD 316 (498)
Q Consensus 246 v~~~~~~~~~~~~~g~v~~d~~---------grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~ 316 (498)
+...|... .+.||+++.++. .+|..|.|||.....+.+. ....+++|+|||+|+.+
T Consensus 147 ~GI~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl-------------~~G~y~WNsGiF~~~a~ 211 (478)
T PRK15460 147 FGIVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYV-------------ASGEYYWNSGMFLFRAG 211 (478)
T ss_pred EecCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHH-------------HcCCEEEecceeheeHH
Confidence 65555443 367999998642 2699999999876543321 12347999999999999
Q ss_pred HHHHHHHhhCCC--------------CCch--h-hhhHH--------HHhh--cCceEEEEEcceEeecCCHHHHHHHH
Q 010874 317 VLFKLLRWRYPT--------------SNDF--G-SEIIP--------AAIM--EHDVQAYIFRDYWEDIGTIKSFYEAN 368 (498)
Q Consensus 317 vL~~ll~~~~~~--------------~~df--~-~dii~--------~~i~--~~~I~~~~~~~~w~dIgt~~dy~~An 368 (498)
.|...++...|. ..++ + .+.++ .++- ..++.+.+.+--|.|+|++.++.+..
T Consensus 212 ~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 212 RYLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 877666543331 0010 0 12222 2221 25688888877899999999998863
|
|
| >COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-19 Score=162.43 Aligned_cols=220 Identities=15% Similarity=0.199 Sum_probs=157.7
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|.|||||||.|||+.|||...||+|+.|.|+ |||+++|+.|.+.||++|+|||||..++. +||...| +
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy-------~--- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKY-------D--- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhc-------C---
Confidence 6799999999999999999999999999999 99999999999999999999999998876 6887543 2
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
|.+++..... --....++..++++++ +..|+.+|.....++ +.+.....+-.......
T Consensus 69 vtLvyN~kY~-------~yNn~ySlyla~d~l~--------ntYiidsDnyl~kNi------f~~~~~~S~Yfav~~~~- 126 (231)
T COG4750 69 VTLVYNPKYR-------EYNNIYSLYLARDFLN--------NTYIIDSDNYLTKNI------FLTKESHSKYFAVYRSG- 126 (231)
T ss_pred eEEEeCchHH-------hhhhHHHHHHHHHHhc--------ccEEeccchHhhhhh------hhcCcccceEEEEEecC-
Confidence 6777654321 1256688888888884 578899999776553 11212222222211111
Q ss_pred CCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHH---HHHHHHhhCCC---
Q 010874 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDV---LFKLLRWRYPT--- 328 (498)
Q Consensus 255 ~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~v---L~~ll~~~~~~--- 328 (498)
..+-.++..+.+|+|..+.-.-. ...+.+|+-.|+... +..+++..+-.
T Consensus 127 -~tnEw~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~ 181 (231)
T COG4750 127 -KTNEWLLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLEN 181 (231)
T ss_pred -CCceeEEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCchh
Confidence 23455778888999998853222 257889999999754 44455554422
Q ss_pred CCchhhhhHHHHhhcCceEEEEEcc-eEeecCCHHHHHHHHHHhhc
Q 010874 329 SNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 329 ~~df~~dii~~~i~~~~I~~~~~~~-~w~dIgt~~dy~~An~~ll~ 373 (498)
..-|..++.-..+++..+++-..++ --+.+++.++|......++.
T Consensus 182 ~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l~ 227 (231)
T COG4750 182 RKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFLS 227 (231)
T ss_pred hhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhcC
Confidence 1234556677777777777766653 47789999999888776543
|
|
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-17 Score=166.66 Aligned_cols=237 Identities=14% Similarity=0.149 Sum_probs=157.2
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
.+++.+||||+|.++||. +|+|+|++|+ |||+|+++.+..++..+. |++.++.+.+.+++. . ++
T Consensus 45 ~~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~-VVV~~~~e~I~~~~~-~-------~~ 108 (293)
T PLN02917 45 RSRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDH-IVVATDDERIAECCR-G-------FG 108 (293)
T ss_pred CCcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCE-EEEECChHHHHHHHH-H-------cC
Confidence 356789999999999995 4999999999 999999999998765444 333456677766664 1 12
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEE--E
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITI--S 247 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv--~ 247 (498)
++++...+.. ..||+++ ..+.+.++ ...+.++++.||. +....+..+++.+.+. +++++ +
T Consensus 109 ---v~vi~~~~~~-------~~GT~~~-~~a~~~l~----~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~ 172 (293)
T PLN02917 109 ---ADVIMTSESC-------RNGTERC-NEALKKLE----KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTA 172 (293)
T ss_pred ---CEEEeCCccc-------CCchHHH-HHHHHhcc----CCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEE
Confidence 2333221211 2488877 46666653 1246899999999 3345688999988653 44433 3
Q ss_pred EEecCCCCCCCceEEE--ECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhh
Q 010874 248 CAAVGESRASDYGLVK--IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (498)
Q Consensus 248 ~~~~~~~~~~~~g~v~--~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~ 325 (498)
+.+...+++.+||.++ .|++|+++.|..++-.+.... +++ .....+.++|||.|+.+.|.. +...
T Consensus 173 ~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~----------~~~--~~~i~~~n~Giy~f~~~~L~~-l~~l 239 (293)
T PLN02917 173 VTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG----------KVN--PQFPYLLHLGIQSYDAKFLKI-YPEL 239 (293)
T ss_pred eeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc----------ccc--cccceEEEEEEEEeCHHHHHH-HHcC
Confidence 3344434567899886 687899887765432111000 000 112368899999999999984 4432
Q ss_pred CC---CCCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhcc
Q 010874 326 YP---TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (498)
Q Consensus 326 ~~---~~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~ 374 (498)
.+ +.+.++++++ .+-++.+|.++..+.....|+|++|+..|+..+.++
T Consensus 240 ~~~n~e~e~yLtdl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~ 290 (293)
T PLN02917 240 PPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRER 290 (293)
T ss_pred CCCcccchhccHHHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHc
Confidence 22 2456777776 333345788888765667999999999999987543
|
|
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-18 Score=165.29 Aligned_cols=240 Identities=18% Similarity=0.308 Sum_probs=160.8
Q ss_pred eEEEEEeCCCCCcccCCcc-CCCccceecCC-cchhHHHHHHHHHh-cCCCeEEEEeccCchh-HHHHHHhhccCCCCcC
Q 010874 95 VAAIILGGGAGTKLFPLTL-RAATPAVPVAG-CYRLIDIPMSNCIN-SGINKIFVLTQFNSAS-LNRHIARTYFGNGTNF 170 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~-~~PK~LlpI~G-~~pLId~~L~~l~~-sGi~~I~Vv~~~~~~~-l~~hl~~~~~~~~~~~ 170 (498)
|.+||||||.|||||||+. .+||+++++.| + .|++.+++++.. .++++++|+|+..... +.+.+.+. +.+.
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~-Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~----~~~~ 76 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDL-SLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEI----DIEN 76 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCC-cHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhh----hhcc
Confidence 6899999999999999975 59999999965 6 999999999988 6799999999876543 33444310 0010
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC--HHHHHHHHH---HcCCCeE
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD--YMDFIQSHV---DRDADIT 245 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d--l~~ll~~h~---~~~ad~t 245 (498)
- .. ++-+.. + +.||.|+..+.-.+.. ...+.-++|++.||+.... |.+.++... +++.-+|
T Consensus 77 ~-~~--illEP~--g-------RnTApAIA~aa~~~~~--~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVT 142 (333)
T COG0836 77 A-AG--IILEPE--G-------RNTAPAIALAALSATA--EGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVT 142 (333)
T ss_pred c-cc--eEeccC--C-------CCcHHHHHHHHHHHHH--hCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEE
Confidence 0 11 332222 1 5799999877544432 1223459999999988654 666665543 3455556
Q ss_pred EEEEecCCCCCCCceEEEECCC------CCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHH
Q 010874 246 ISCAAVGESRASDYGLVKIDNM------GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF 319 (498)
Q Consensus 246 v~~~~~~~~~~~~~g~v~~d~~------grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~ 319 (498)
+...|... .+.||+++..+. -+|.+|.|||.....+.+. ....+++|+|+|+|+...+.
T Consensus 143 fGI~Pt~P--eTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv-------------~sG~y~WNSGmF~Fra~~~l 207 (333)
T COG0836 143 FGIPPTRP--ETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYV-------------ESGEYLWNSGMFLFRASVFL 207 (333)
T ss_pred EecCCCCC--ccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHH-------------HcCceEeeccceEEEHHHHH
Confidence 55555433 368999998542 2799999999876543221 22348999999999999877
Q ss_pred HHHHhhCCC-----------CCc--hh---hh--------hHHHHh--hcCceEEEEEcceEeecCCHHHHHHHH
Q 010874 320 KLLRWRYPT-----------SND--FG---SE--------IIPAAI--MEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (498)
Q Consensus 320 ~ll~~~~~~-----------~~d--f~---~d--------ii~~~i--~~~~I~~~~~~~~w~dIgt~~dy~~An 368 (498)
+.++...|. ..+ +. .+ -+..++ +..++.+.+.+-.|-|+|++.++++..
T Consensus 208 ~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~ 282 (333)
T COG0836 208 EELKKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVL 282 (333)
T ss_pred HHHHhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHh
Confidence 666654332 001 10 11 122223 236788888888899999999988764
|
|
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=139.72 Aligned_cols=219 Identities=17% Similarity=0.147 Sum_probs=141.9
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCc-hhHHHHHHhhccCCCCc
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNS-ASLNRHIARTYFGNGTN 169 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~-~~l~~hl~~~~~~~~~~ 169 (498)
|+.+.+||||||.|+||. ...||+|+|++|+ |||+|+++++..++ +++|+|++++.. +.+.+++. ..
T Consensus 1 ~~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~----~~--- 69 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLL----AK--- 69 (227)
T ss_pred CCceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhh----cc---
Confidence 456889999999999995 3478999999999 99999999999865 899999998765 33322221 10
Q ss_pred CCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEE
Q 010874 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITIS 247 (498)
Q Consensus 170 ~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~ 247 (498)
. ..+.++. .. .+.+++++.+...++ ..+.++++.||. +....+..+++.+.+.+ ..+.
T Consensus 70 ~--~~~~~~~--~~---------~~~~~sv~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~ 129 (227)
T PRK00155 70 D--PKVTVVA--GG---------AERQDSVLNGLQALP-----DDDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAIL 129 (227)
T ss_pred C--CceEEeC--Cc---------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEE
Confidence 0 1133332 11 256899999887663 236799999998 33456889999876653 3444
Q ss_pred EEecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC
Q 010874 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (498)
Q Consensus 248 ~~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~ 327 (498)
+.+..+ .+. .++++|.+..+.+. ... .... +.|.|+.+.|.+++....+
T Consensus 130 ~~~~~~----~~~--~v~~~g~~~~~~~r---~~~---------------------~~~~-~p~~f~~~~l~~~~~~~~~ 178 (227)
T PRK00155 130 AVPVKD----TIK--RSDDGGGIVDTPDR---SGL---------------------WAAQ-TPQGFRIELLREALARALA 178 (227)
T ss_pred EEeccc----cEE--EEcCCCceeecCCh---HHh---------------------eeee-CCccchHHHHHHHHHHHHh
Confidence 445433 122 23555666554321 110 1222 3799999999888765332
Q ss_pred CCCchhhhhHHHHhh-cCceEEEEEcceEeecCCHHHHHHHHHHhhc
Q 010874 328 TSNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 328 ~~~df~~dii~~~i~-~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~ 373 (498)
. ..+..|....+.+ ..++..+..+..+.+|+|++||..|+..+.+
T Consensus 179 ~-~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 179 E-GKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred c-CCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHh
Confidence 1 2233443333222 3467666666668899999999999876643
|
|
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=138.87 Aligned_cols=210 Identities=14% Similarity=0.128 Sum_probs=140.1
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc-CCCeEEEEeccCc-hhHHHHHHhhccCCCCcCCCCe
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~-~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|||||||.|+||.. ..||+|+|++|+ |||+|+++++..+ ++++|+|++++.. +.+..++. . . ..
T Consensus 2 aiIlAaG~s~R~~~---~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-----~--~---~~ 67 (217)
T TIGR00453 2 AVIPAAGRGTRFGS---GVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLV-----A--R---AV 67 (217)
T ss_pred EEEEcCcccccCCC---CCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhh-----c--C---Cc
Confidence 79999999999973 479999999999 9999999999998 8999999998754 33332222 0 0 01
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
++++. +. .+..++++.++..++ ..+.++++.||. +. ...+..+++.+.+. ++++++.+..
T Consensus 68 ~~~~~--~~---------~~~~~sl~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~~ 129 (217)
T TIGR00453 68 PKIVA--GG---------DTRQDSVRNGLKALK-----DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPVA 129 (217)
T ss_pred EEEeC--CC---------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEecc
Confidence 33332 11 134578888876551 247899999998 34 45578888877654 3444555543
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCch
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df 332 (498)
.++..+|++|.+..+.|+.. .....+ .|.|+...|.+++....... .+
T Consensus 130 ------~~v~~~~~~g~~~~~~~r~~------------------------~~~~~~-p~~f~~~~l~~~~~~~~~~~-~~ 177 (217)
T TIGR00453 130 ------DTLKRVEADGFIVETVDREG------------------------LWAAQT-PQAFRTELLKKALARAKEEG-FE 177 (217)
T ss_pred ------ceEEEEcCCCceeecCChHH------------------------eEEEeC-CCcccHHHHHHHHHHHHhcC-CC
Confidence 34555566677777765321 123344 69999999988776432222 22
Q ss_pred hhhhHHHHhh-cCceEEEEEcceEeecCCHHHHHHHHHH
Q 010874 333 GSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (498)
Q Consensus 333 ~~dii~~~i~-~~~I~~~~~~~~w~dIgt~~dy~~An~~ 370 (498)
..|....+.+ ..++..+..+..+.+|+|++||..|+..
T Consensus 178 ~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 178 ITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred CCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 3444433332 3567777766667899999999988753
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-13 Score=135.46 Aligned_cols=228 Identities=15% Similarity=0.203 Sum_probs=143.2
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
+||+|+|.|+||. +|+|++++|+ |||.|+++++.++++++|+|++.. +.+.+++. . ++ ++
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~-~-------~g---~~ 61 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATDD--ESVAQTCQ-K-------FG---IE 61 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHH-H-------cC---CE
Confidence 7999999999994 6999999999 999999999999899999998864 44555553 2 22 22
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
++...+.. ..|+.. +..+...+. ....+.++++.||. +. ...+.++++.+.+.+.++++++.+..+.
T Consensus 62 ~v~~~~~~-------~~Gt~r-~~~~~~~l~---~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~ 130 (238)
T TIGR00466 62 VCMTSKHH-------NSGTER-LAEVVEKLA---LKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDA 130 (238)
T ss_pred EEEeCCCC-------CChhHH-HHHHHHHhC---CCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCH
Confidence 22111110 124433 333333331 01235688999998 34 4557888888866667778877776542
Q ss_pred CC---CCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCc
Q 010874 255 RA---SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (498)
Q Consensus 255 ~~---~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~d 331 (498)
.. .+...+..|.+|+.+.|...+.......+ .....|.. ..++...|+|.|++++|.++.... ++..+
T Consensus 131 ~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~-----~~~~tpq~---~~~~~h~Giy~~~~~~L~~~~~~~-~~~le 201 (238)
T TIGR00466 131 EEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFF-----AKRQTPVG---DNLLRHIGIYGYRAGFIEEYVAWK-PCVLE 201 (238)
T ss_pred HHccCCCceEEEeCCCCeEEEecCCCCCCCCCcc-----cccccccc---cceeEEEEEEeCCHHHHHHHHhCC-CCccc
Confidence 11 22334445778898888765332110000 00111211 125678999999999999876542 22111
Q ss_pred hh--hhhHHHHhhcCceEEEEEcce-EeecCCHHHH
Q 010874 332 FG--SEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSF 364 (498)
Q Consensus 332 f~--~dii~~~i~~~~I~~~~~~~~-w~dIgt~~dy 364 (498)
-. -|-++.+-.+.+|.+...+.. -..|+||+|+
T Consensus 202 ~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 202 EIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred ccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 11 134555556688998888755 4599999987
|
|
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.5e-14 Score=134.99 Aligned_cols=212 Identities=17% Similarity=0.201 Sum_probs=140.7
Q ss_pred EEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
.+||||||.|+||++ ..||+|+|++|+ |||+|+++++..++ +++|+|++++........+. .+ . .. ..
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~-~~-~----~~-~~ 70 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELA-KY-G----LS-KV 70 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHH-hc-c----cC-CC
Confidence 589999999999985 379999999999 99999999999876 99999999877655443331 11 0 11 11
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
+.++... .+..++++.++..+++ ...+.++++.||+ +. ...+..+++.+.+.++ .+.+.+..
T Consensus 71 ~~~~~~~-----------~~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~~ 134 (218)
T cd02516 71 VKIVEGG-----------ATRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPVT 134 (218)
T ss_pred eEEECCc-----------hHHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEecc
Confidence 3443211 2457889888876631 1246799999998 33 4558888888865543 34444443
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCch
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df 332 (498)
+ ++...|++|.+..+.|..+ -....++ ++|+.+.|.+++...... ..+
T Consensus 135 ~------~~~~~~~~g~~~~~~~r~~------------------------~~~~~~P-~~f~~~~~~~~~~~~~~~-~~~ 182 (218)
T cd02516 135 D------TIKRVDDDGVVVETLDREK------------------------LWAAQTP-QAFRLDLLLKAHRQASEE-GEE 182 (218)
T ss_pred c------cEEEecCCCceeecCChHH------------------------hhhhcCC-CcccHHHHHHHHHHHHhc-CCC
Confidence 2 2344677788888765321 1345667 999999999888654333 223
Q ss_pred hhhhHHHHhhc-CceEEEEEcceEeecCCHHHHHH
Q 010874 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYE 366 (498)
Q Consensus 333 ~~dii~~~i~~-~~I~~~~~~~~w~dIgt~~dy~~ 366 (498)
++|....+.+. .++....-+..-.||+||+||..
T Consensus 183 ~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 183 FTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred cCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 45544333332 45666555555569999999964
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=131.92 Aligned_cols=216 Identities=19% Similarity=0.222 Sum_probs=137.9
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
+.+||||+|.|+||. .|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++. .+ +.
T Consensus 2 ~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~-~~-------~~- 63 (223)
T cd02513 2 ILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVSTD--DEEIAEVAR-KY-------GA- 63 (223)
T ss_pred eEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHH-Hh-------CC-
Confidence 579999999999995 3999999999 99999999999987 788887763 455555543 11 10
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEec
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
.+.+.......+. ..|+.++++.++..+++. ....+.++++.||. +...++..+++.+.+.+++.++.+.+.
T Consensus 64 ~~~~~~~~~~~~~-----~~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~ 137 (223)
T cd02513 64 EVPFLRPAELATD-----TASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEF 137 (223)
T ss_pred CceeeCChHHCCC-----CCCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 0112211110000 148899999998877521 01136899999999 555678999999988778877777665
Q ss_pred CCCCCCCceEEEECCCC-CEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCC
Q 010874 252 GESRASDYGLVKIDNMG-RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~g-rV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~ 330 (498)
.+ ..-++.. .+++| .+..+.++..... -+ ....+..++|+|+++++.|.+. ..
T Consensus 138 ~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~-----q~-----------~~~~~~~n~~~y~~~~~~~~~~-------~~ 191 (223)
T cd02513 138 HR--FPWRALG-LDDNGLEPVNYPEDKRTRR-----QD-----------LPPAYHENGAIYIAKREALLES-------NS 191 (223)
T ss_pred Cc--CcHHhee-eccCCceeccCcccccCCc-----CC-----------ChhHeeECCEEEEEEHHHHHhc-------CC
Confidence 43 1122222 22223 2222211111000 00 0123567889999999987531 00
Q ss_pred chhhhhHHHHhhcCceEEEEEcc-eEeecCCHHHHHHHHHH
Q 010874 331 DFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMA 370 (498)
Q Consensus 331 df~~dii~~~i~~~~I~~~~~~~-~w~dIgt~~dy~~An~~ 370 (498)
. -..++..+..+. .-.||+|++||..|...
T Consensus 192 ~----------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~ 222 (223)
T cd02513 192 F----------FGGKTGPYEMPRERSIDIDTEEDFELAEAL 222 (223)
T ss_pred c----------cCCCeEEEEeCccceeCCCCHHHHHHHHHh
Confidence 1 156787887776 48999999999988653
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-13 Score=141.96 Aligned_cols=208 Identities=13% Similarity=0.116 Sum_probs=138.8
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~ 170 (498)
|+++.+||||||.|+||. ...||+++|++|+ |||+|+++.+.+++ +++|+|++++....+.+.+. . .+
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~----~---~~ 71 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKAL----P---EI 71 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhc----c---cC
Confidence 667899999999999994 4589999999999 99999999999987 79999999876554433221 1 11
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCCeEEEE
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISC 248 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h~~~~ad~tv~~ 248 (498)
. .+.++. .. .+..++|+.++..++ .+.+++..||. +.+ ..+..+++...+ .+.++.+
T Consensus 72 ~--~v~~v~--gG---------~~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~~ 130 (378)
T PRK09382 72 K--FVTLVT--GG---------ATRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLPA 130 (378)
T ss_pred C--eEEEeC--CC---------chHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEEE
Confidence 1 133332 11 256788999887764 26789999986 444 346777776654 3567777
Q ss_pred EecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC
Q 010874 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (498)
Q Consensus 249 ~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~ 328 (498)
.++.+ ...|+...+|. .++..+ ++|.... .+.+.... ..
T Consensus 131 ~pv~D--tik~~~~tldR-~~l~~~-QTPQ~f~---------------------------------~~~l~~a~----~~ 169 (378)
T PRK09382 131 LPVAD--TLKRANETVDR-EGLKLI-QTPQLSR---------------------------------TKTLKAAA----DG 169 (378)
T ss_pred EEecc--CcEEeeeEcCc-ccEEEE-ECCCCCC---------------------------------HHHHHHHH----hC
Confidence 78766 34565445543 345444 6665432 11222211 11
Q ss_pred CCchhhhhHHHHhh-cCceEEEEEcceEeecCCHHHHHHHHHHhhc
Q 010874 329 SNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 329 ~~df~~dii~~~i~-~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~ 373 (498)
..+ .+|..+.+.. ..+|..+.-+..|.+|+||+||..|+..+..
T Consensus 170 ~~~-~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 170 RGD-FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCC-cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 222 3455554443 4678888888899999999999999887643
|
|
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-14 Score=133.00 Aligned_cols=125 Identities=20% Similarity=0.242 Sum_probs=94.7
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|.|||||||+|+||.+ .||+|+|++|+ |||+|+++++.++++++|+|+++++.+.+..|+.+.+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6899999999999976 79999999999 9999999999999999999999988888877775211
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee--eecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l--~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
..+.. +.+ .|...++..++..+. ..++|++++||+. ....+..+++.+...+.....++.+
T Consensus 65 ~~~~~---~~g-------~G~~~~l~~al~~~~-----~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~ 127 (183)
T TIGR00454 65 KDYKN---ASG-------KGYIEDLNECIGELY-----FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIP 127 (183)
T ss_pred cEEEe---cCC-------CCHHHHHHHHhhccc-----CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEec
Confidence 12221 111 477788887765432 2478999999984 3566888998887665554444433
|
At this time this gene appears to be present only in Archea |
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-13 Score=130.02 Aligned_cols=218 Identities=14% Similarity=0.124 Sum_probs=136.0
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc-CCCeEEEEeccCch-hHHHHHHhhccCCCCcCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSA-SLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~~-~l~~hl~~~~~~~~~~~~ 171 (498)
++.+||||||.|+||. ...||+|++++|+ |||.|+++++.++ .+++|+|+++.... .+.+.+. .| + +.
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~-~~-~----~~ 71 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMK-QL-N----VA 71 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHH-hc-C----cC
Confidence 3689999999999996 3579999999999 9999999999876 58999999976432 2222332 22 1 10
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCCeEEEEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
...++++... .+..++++.++..++ ..+.++++.||. +.. ..+..+++.+.+.++. +.+.
T Consensus 72 ~~~~~~v~~g-----------~~r~~sv~~gl~~~~-----~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~ 133 (230)
T PRK13385 72 DQRVEVVKGG-----------TERQESVAAGLDRIG-----NEDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAV 133 (230)
T ss_pred CCceEEcCCC-----------chHHHHHHHHHHhcc-----CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEE
Confidence 1124444211 134588888877663 235678889999 444 4478888887765543 3333
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCC
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~ 329 (498)
++.+ .+... .+|.+....+ ++ . .+.--+.|.|+.+.|.+..+.....
T Consensus 134 ~~~d------ti~~~-~~~~~~~~i~--r~-~----------------------~~~~qtpq~f~~~~l~~~~~~~~~~- 180 (230)
T PRK13385 134 EVKD------TVKRV-KDKQVIETVD--RN-E----------------------LWQGQTPQAFELKILQKAHRLASEQ- 180 (230)
T ss_pred eccc------eEEEE-cCCeeEeccC--HH-H----------------------HhhhcCCceeeHHHHHHHHHHHHhc-
Confidence 4332 12222 2354433322 11 1 1222347899998888776642222
Q ss_pred CchhhhhHHHHh-hcCceEEEEEcceEeecCCHHHHHHHHHHhh
Q 010874 330 NDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 330 ~df~~dii~~~i-~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll 372 (498)
..+.++....+. ...+|..+.-+.....|+||+|+..|...+.
T Consensus 181 ~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 181 QFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred CCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 223445333333 3456777766667899999999999987664
|
|
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-13 Score=126.60 Aligned_cols=119 Identities=13% Similarity=0.238 Sum_probs=88.4
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++..+.+.+++.+ .++ +.
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~-------~~~---v~ 65 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLAN-------HSN---IT 65 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhcc-------CCC---eE
Confidence 7999999999997 48999999999 99999999999999999999999887655444321 122 44
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCe
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADI 244 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~ 244 (498)
++.... +..|++++++.++.+ . ...+.++++.||+ +. ...+..+++.+.+.+.++
T Consensus 66 ~v~~~~--------~~~g~~~si~~~l~~-~----~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 66 LVHNPQ--------YAEGQSSSIKLGLEL-P----VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred EEECcC--------hhcCHHHHHHHHhcC-C----CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 443221 125889999988752 1 1247899999999 33 346788888876655543
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.7e-14 Score=127.02 Aligned_cols=120 Identities=19% Similarity=0.313 Sum_probs=92.4
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~ 176 (498)
+||||||.|+||. .||+|+|++|+ |||+|+++.+.+.++++|+|++++ +++..++. +++ ++
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~--------~~~---~~ 61 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLE--------RYG---IK 61 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHT--------TTT---SE
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHh--------ccC---ce
Confidence 7999999999997 39999999999 999999999999999999999988 44544442 122 44
Q ss_pred EecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-e-cCHHHHHHHHHHcCCCeEEEE
Q 010874 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDADITISC 248 (498)
Q Consensus 177 v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~-~-~dl~~ll~~h~~~~ad~tv~~ 248 (498)
++..... -.|++++|+.+...+. ..+.|++++||+.+ + ..+..+++.+.+.++++++..
T Consensus 62 ~v~~~~~--------~~G~~~sl~~a~~~~~-----~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~ 122 (160)
T PF12804_consen 62 VVVDPEP--------GQGPLASLLAALSQLP-----SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV 122 (160)
T ss_dssp EEE-STS--------SCSHHHHHHHHHHTST-----TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred EEEeccc--------cCChHHHHHHHHHhcc-----cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence 5443221 2599999999986652 35899999999943 4 457889998887777765543
|
... |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-14 Score=137.44 Aligned_cols=136 Identities=21% Similarity=0.316 Sum_probs=93.2
Q ss_pred chhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccCC-----------CccccCCCCCCCCCCccCCCeEe
Q 010874 331 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESP-----------AFHFYDPKTPFYTSPRFLPPTKI 399 (498)
Q Consensus 331 df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~-----------~~~~~~~~~~i~~~~~i~~~~~i 399 (498)
+| .|.++.++..+ ++.+++||.|+ ++|++||+++|+... ...+......+.+++.+.+++.|
T Consensus 29 ~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~I 101 (231)
T TIGR03532 29 DF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVII 101 (231)
T ss_pred cc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEE
Confidence 44 57788777666 88899999999 999999999997632 11122233344444444444444
Q ss_pred c-Ceee------e-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcc---------eEEeCCccccchhHHHHhhcC
Q 010874 400 D-NCRI------K-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD---------TVMLGADYYQTESEIASLLAE 460 (498)
Q Consensus 400 ~-~~~I------~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~---------svi~~~~~~~~~~~~~s~l~~ 460 (498)
+ ++.| . +++||++|.|+ ++.|. +++||++|+||.++.|.+ ++|.++
T Consensus 102 G~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~--------------- 166 (231)
T TIGR03532 102 GDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDN--------------- 166 (231)
T ss_pred CCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCC---------------
Confidence 2 2333 2 57777777777 67674 778888888888888764 334433
Q ss_pred CcccEEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 010874 461 GKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 461 ~~~~v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~ 492 (498)
+.||.++.| .+++|++++.|++++++..
T Consensus 167 ----v~IG~gsvI~~g~~Ig~~~~IgagsvV~~ 195 (231)
T TIGR03532 167 ----VLIGANAVILEGVRVGKGAVVAAGAIVTE 195 (231)
T ss_pred ----cEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 788888887 4788888888888888754
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=122.28 Aligned_cols=120 Identities=18% Similarity=0.293 Sum_probs=89.4
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++++.+.++++|+|++++....+.+++. .++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~--------~~~--- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALA--------GLP--- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhc--------CCC---
Confidence 4589999999999985 8999999999 9999999999999999999999887655533331 122
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-e-eecCHHHHHHHHHHcCCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-L-YRMDYMDFIQSHVDRDAD 243 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l-~~~dl~~ll~~h~~~~ad 243 (498)
+.++..... ..|++++++.++..+.. ..+.++++.||+ + ....+..+++.+.+.+++
T Consensus 64 ~~~~~~~~~--------~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 64 VVVVINPDW--------EEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred eEEEeCCCh--------hhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 333332221 25999999999876631 247899999999 3 345578888877654443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-11 Score=120.28 Aligned_cols=221 Identities=14% Similarity=0.091 Sum_probs=132.8
Q ss_pred CCCCCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHhhccCCC
Q 010874 89 RVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNG 167 (498)
Q Consensus 89 ~~~~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~-sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~ 167 (498)
...++.+.+||||||.|+||. ...||++++++|+ |||+|+++.+.+ .++++|+|++++......+.+.+.
T Consensus 19 ~~~~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~----- 89 (252)
T PLN02728 19 VVKEKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN----- 89 (252)
T ss_pred ccccCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh-----
Confidence 344667899999999999996 3579999999999 999999999998 489999999987644333322221
Q ss_pred CcCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce---eee-cCHHHHHHHHHHcCCC
Q 010874 168 TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH---LYR-MDYMDFIQSHVDRDAD 243 (498)
Q Consensus 168 ~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~---l~~-~dl~~ll~~h~~~~ad 243 (498)
++ ..+.++. .. .+..++|+.++..++ .+..+|+.+|. +.. ..+..+++...+.++
T Consensus 90 --~~-~~i~~v~--gg---------~~r~~SV~~gl~~l~------~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga- 148 (252)
T PLN02728 90 --ID-VPLKFAL--PG---------KERQDSVFNGLQEVD------ANSELVCIHDSARPLVTSADIEKVLKDAAVHGA- 148 (252)
T ss_pred --cC-CceEEcC--CC---------CchHHHHHHHHHhcc------CCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCe-
Confidence 11 1133321 11 134677888876663 13445666673 333 346788887766654
Q ss_pred eEEEEEecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHH
Q 010874 244 ITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR 323 (498)
Q Consensus 244 ~tv~~~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~ 323 (498)
.+...++.+ .+...++++.|... +........|- =..|+.+.|.+..+
T Consensus 149 -~i~~~~~~d------tik~v~~~~~v~~t---~~R~~l~~~QT----------------------PQ~F~~~~l~~a~~ 196 (252)
T PLN02728 149 -AVLGVPVKA------TIKEANSDSFVVKT---LDRKRLWEMQT----------------------PQVIKPELLRRGFE 196 (252)
T ss_pred -EEEeecchh------hEEEecCCCceeec---cChHHeEEEeC----------------------CccchHHHHHHHHH
Confidence 355555443 23334555554332 22222111111 14566777766655
Q ss_pred hhCCCCCchhhhhHHHHh-hcCceEEEEEcceEeecCCHHHHHHHHHHhh
Q 010874 324 WRYPTSNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 324 ~~~~~~~df~~dii~~~i-~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll 372 (498)
....... +.+|-...+. ...+|....-+..-+-|.||+|+..|+..+-
T Consensus 197 ~~~~~~~-~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~ 245 (252)
T PLN02728 197 LVEREGL-EVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILN 245 (252)
T ss_pred HHHhcCC-CcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHh
Confidence 4322222 2344333222 2355665444445688999999999987654
|
|
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=99.41 E-value=5e-12 Score=117.83 Aligned_cols=107 Identities=12% Similarity=0.177 Sum_probs=80.9
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|.+||||||.|+||.+ ||+|+|++|+ |||+|+++.+... +++|+|++++..+. . . .++
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~----~-~-------~~~--- 58 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER----Y-A-------LLG--- 58 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH----H-h-------hcC---
Confidence 4689999999999984 8999999999 9999999999887 89999999886543 1 1 111
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHH
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSH 237 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h 237 (498)
+.++.... +..|..++|+.++..++ .+.++++.||+ +.+ ..+..+++.+
T Consensus 59 ~~~v~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 59 VPVIPDEP--------PGKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CcEeeCCC--------CCCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 33443221 12589999999886653 47899999999 334 4467777665
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-11 Score=116.31 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=81.7
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
|.+|.+||||||.|+||. ..||+++|++|+ |||+|+++.+. .++++|+|+++...+.+ . . ++
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~-~-------~~ 62 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARY----A-A-------FG 62 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHH----H-h-------cC
Confidence 567899999999999995 268999999999 99999999998 78999999987643221 1 1 11
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeec-CHHHHHHHHHH
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVD 239 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~-dl~~ll~~h~~ 239 (498)
+.++..... ...|..++++.++... ..+.++++.||+ +... .+..+++.+.+
T Consensus 63 ---~~~v~~~~~-------~~~g~~~~i~~~l~~~------~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 63 ---LPVIPDSLA-------DFPGPLAGILAGLKQA------RTEWVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred ---CcEEeCCCC-------CCCCCHHHHHHHHHhc------CCCeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 233322111 1258888998887643 247899999999 4443 46777776543
|
|
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-12 Score=109.16 Aligned_cols=80 Identities=38% Similarity=0.620 Sum_probs=74.0
Q ss_pred CeEe-cCeeeeceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe
Q 010874 396 PTKI-DNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 474 (498)
Q Consensus 396 ~~~i-~~~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~ 474 (498)
|++| ++++|++++||++|.|+++.|++|+||++|+|+++|+|.+|+++++ +.||+++.+.
T Consensus 1 p~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~ 61 (104)
T cd04651 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIR 61 (104)
T ss_pred CceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEE
Confidence 3455 4588889999999999989999999999999999999999999998 8999999999
Q ss_pred eeEECCCCEECCCcEEeCCC
Q 010874 475 NCIIDKNVKIGKDVVIVNKD 494 (498)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~ 494 (498)
+|+|++++.|++++.+.+..
T Consensus 62 ~siig~~~~Ig~~~~v~~~~ 81 (104)
T cd04651 62 RAIIDKNVVIPDGVVIGGDP 81 (104)
T ss_pred eEEECCCCEECCCCEECCCc
Confidence 99999999999999998874
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-10 Score=111.34 Aligned_cols=215 Identities=16% Similarity=0.223 Sum_probs=141.0
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V 175 (498)
|||+|+|.++||. .|.+.|++|+ |||.|+++.+.+++ +++|+|.+. .+.+.+... .| +. .+
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~-~~-------g~-~v 63 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAK-SY-------GA-SV 63 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHH-Hc-------CC-Ee
Confidence 7999999999994 4999999999 99999999999986 688877654 345544432 22 21 12
Q ss_pred EEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--ecCHHHHHHHHHHcCCCeEEEEEecCC
Q 010874 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGE 253 (498)
Q Consensus 176 ~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~--~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (498)
.+..+..-. .+..|+.++++.++..++.. ...+.++++.+|.=+ ..++..+++.+.+.++|..+.+.+...
T Consensus 64 ~~~r~~~l~-----~d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~ 136 (222)
T TIGR03584 64 PFLRPKELA-----DDFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAF 136 (222)
T ss_pred EEeChHHHc-----CCCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCC
Confidence 222111100 01258899999998777421 124779999999933 457899999988877888888777543
Q ss_pred CCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCchh
Q 010874 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (498)
Q Consensus 254 ~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df~ 333 (498)
. .+-....+++|+...+......... ++. ...+..+.++|+++++.|.+ . . .+
T Consensus 137 ~---~~~~~~~~~~g~~~~~~~~~~~~~r--------------Qd~-~~~y~~nga~y~~~~~~~~~---~----~-~~- 189 (222)
T TIGR03584 137 P---IQRAFKLKENGGVEMFFPEHFNTRS--------------QDL-EEAYHDAGQFYWGKSQAWLE---S----G-PI- 189 (222)
T ss_pred C---hHHheEECCCCcEEecCCCcccCCC--------------CCC-chheeeCCeEEEEEHHHHHh---c----C-Cc-
Confidence 1 1222345566777665422111000 000 12356799999999998752 1 1 11
Q ss_pred hhhHHHHhhcCceEEEEEcc-eEeecCCHHHHHHHHHHh
Q 010874 334 SEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 334 ~dii~~~i~~~~I~~~~~~~-~w~dIgt~~dy~~An~~l 371 (498)
-..++..|..+. ...||+|++||..|...+
T Consensus 190 --------~~~~~~~~~m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 190 --------FSPHSIPIVLPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred --------cCCCcEEEEeCccceeCCCCHHHHHHHHHHH
Confidence 135677888775 489999999999997643
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.4e-11 Score=109.13 Aligned_cols=121 Identities=18% Similarity=0.310 Sum_probs=93.3
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
+..+.+||||||.|+||. .+|.|+|+.|+ ||++++++.+.+++.++|+|+++|........+. .
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~----~------ 66 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALL----A------ 66 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhh----c------
Confidence 456889999999999999 68999999999 9999999999999999999999997322211111 1
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHc
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDR 240 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~ 240 (498)
...+.++.+.+ |-+|.+.+++.+...... ..+.++++.||+ +...++..+++.++..
T Consensus 67 ~~~~~~v~npd--------~~~Gls~Sl~ag~~a~~~----~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 67 QLGVTVVVNPD--------YAQGLSTSLKAGLRAADA----EGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred cCCeEEEeCcc--------hhhhHhHHHHHHHHhccc----CCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 11256665443 447999999999877652 125899999999 5567788888877665
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.33 E-value=8e-12 Score=101.20 Aligned_cols=77 Identities=13% Similarity=0.415 Sum_probs=69.7
Q ss_pred cCCCeEe-cCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCC
Q 010874 393 FLPPTKI-DNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (498)
Q Consensus 393 i~~~~~i-~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~ 470 (498)
++++++| .++.|.+++||++|.|+ ++.|++|+|++++.|+++|+|.+++++++ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCC
Confidence 4556666 35777789999999999 89999999999999999999999999998 899999
Q ss_pred cEEeeeEECCCCEECCCc
Q 010874 471 TKIRNCIIDKNVKIGKDV 488 (498)
Q Consensus 471 ~~i~~~iI~~~~~Ig~~~ 488 (498)
+++.+|+|+++++|++++
T Consensus 63 ~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 63 CKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred CEEccCEECCCcEeCCCC
Confidence 999999999999999885
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.3e-11 Score=110.10 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=82.2
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
+.+||||||.|+||. .+||+|+|++|+ |||+|+++++.. ++++|+|++++..+. +... .++
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~-------~~~--- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQA-------GFG--- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc-------cCC---
Confidence 458999999999997 259999999999 999999999975 699999988754321 1110 111
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRDAD 243 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~d-l~~ll~~h~~~~ad 243 (498)
+.++..... +..|+.++|+.++..++ .+.++++.||+ +...+ +..+++...+.+++
T Consensus 62 ~~~i~~~~~-------~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 119 (186)
T TIGR02665 62 LPVVPDALA-------DFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDAD 119 (186)
T ss_pred CcEEecCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCCc
Confidence 233332211 12699999999987663 47899999998 55544 56776665443433
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-10 Score=105.94 Aligned_cols=235 Identities=16% Similarity=0.219 Sum_probs=160.3
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
++..+||.|-=.+|||.. |||-.|+|+ |||.|+.++..++|.++|+|.|.. +.+.+++. .||.
T Consensus 2 ~~~~viIPAR~~STRLpg------KPLadI~Gk-pmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~--------~~G~ 64 (247)
T COG1212 2 MKFVVIIPARLASTRLPG------KPLADIGGK-PMIVRVAERALKSGADRVVVATDD--ERIAEAVQ--------AFGG 64 (247)
T ss_pred CceEEEEecchhcccCCC------CchhhhCCc-hHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHH--------HhCC
Confidence 456789999988999986 999999999 999999999999999999999954 67777775 2431
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
.+ ++.... ...|| +-+..+...+. ....+-++=+.||. +. ...+..+++...+.+++|.-++.+
T Consensus 65 -~a-vmT~~~--------h~SGT-dR~~Ev~~~l~---~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~ 130 (247)
T COG1212 65 -EA-VMTSKD--------HQSGT-DRLAEVVEKLG---LPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVK 130 (247)
T ss_pred -EE-EecCCC--------CCCcc-HHHHHHHHhcC---CCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeee
Confidence 12 221111 22477 44545544442 12345677789998 33 345788888877778888777777
Q ss_pred cCCCC---CCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC
Q 010874 251 VGESR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (498)
Q Consensus 251 ~~~~~---~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~ 327 (498)
..++. ..+-..+..|.+|+-+.|.--|-....+. .- ..+.+--.|||.|++++|.++..+. |
T Consensus 131 i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~~-------------~~p~l~HIGIYayr~~~L~~f~~~~-p 195 (247)
T COG1212 131 ITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-FG-------------GTPFLRHIGIYAYRAGFLERFVALK-P 195 (247)
T ss_pred cCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-cC-------------CcchhheeehHHhHHHHHHHHHhcC-C
Confidence 65432 13445566888999999987665432110 00 0246778999999999999887653 2
Q ss_pred CCCchhh--hhHHHHhhcCceEEEEEcceE-eecCCHHHHHHHHHHhhc
Q 010874 328 TSNDFGS--EIIPAAIMEHDVQAYIFRDYW-EDIGTIKSFYEANMALTK 373 (498)
Q Consensus 328 ~~~df~~--dii~~~i~~~~I~~~~~~~~w-~dIgt~~dy~~An~~ll~ 373 (498)
+.-+-.+ |-|.-+=.+.+|.+...+..- ..|+|++|+..+.+.+.+
T Consensus 196 s~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 196 SPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred chhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 2111111 123333356889998888654 899999999999887754
|
|
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.2e-11 Score=108.54 Aligned_cols=110 Identities=23% Similarity=0.337 Sum_probs=84.9
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|.+||+|||+||||.- .=|||++++|+ |||+|+++.+.+ .+++|+++++.+.....+|+.+. +
T Consensus 1 m~~iiMAGGrGtRmg~----~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~--------g--- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMGR----PEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV--------G--- 63 (177)
T ss_pred CceEEecCCcccccCC----CcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc--------C---
Confidence 5799999999999982 34999999999 999999999988 89999999999999898888632 2
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-ec-CHHHHHHHHH
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RM-DYMDFIQSHV 238 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~-~~-dl~~ll~~h~ 238 (498)
++++. +++ .|--.-++.+.+.+ ..++|++++|+.+ +. .+..+++.+.
T Consensus 64 v~vi~---tpG-------~GYv~Dl~~al~~l-------~~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 VKVIE---TPG-------EGYVEDLRFALESL-------GTPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred ceEEE---cCC-------CChHHHHHHHHHhc-------CCceEEEecccccCCHHHHHHHHHHHh
Confidence 56664 232 25656666666554 2599999999954 43 3566666654
|
|
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-10 Score=108.18 Aligned_cols=112 Identities=18% Similarity=0.189 Sum_probs=80.0
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
+++.+||||||.|+||. .+|+|+|++|+ |||+|+++++.. .+++|+|++++. +.. ..+. . .
T Consensus 6 ~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~-~~~~ivvv~~~~-~~~-~~~~----~----~-- 66 (200)
T PRK02726 6 NNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAA-CADEVYIITPWP-ERY-QSLL----P----P-- 66 (200)
T ss_pred CCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHh-hCCEEEEECCCH-HHH-Hhhc----c----C--
Confidence 45889999999999996 37999999999 999999999975 478999988642 212 1111 1 0
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeec-CHHHHHHHHH
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHV 238 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~-dl~~ll~~h~ 238 (498)
.+.++...+ +..|..++++.++..++ .+.++|+.||+ +... .+..+++.+.
T Consensus 67 -~~~~i~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 67 -GCHWLREPP--------PSQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred -CCeEecCCC--------CCCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 134443222 12689999999987663 37899999999 3343 4667777653
|
|
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-10 Score=106.52 Aligned_cols=107 Identities=11% Similarity=0.246 Sum_probs=73.0
Q ss_pred CCCCCceEEEEEeCCCCCcccCCccCCCccceecCC-cchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCC
Q 010874 89 RVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAG-CYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNG 167 (498)
Q Consensus 89 ~~~~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G-~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~ 167 (498)
++++.++.+||||||.|+||. .+|+|+|++| + |||+|+++++... +++|+|++++ +.. .
T Consensus 3 ~~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~~----~------- 62 (196)
T PRK00560 3 NPMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KKF----E------- 62 (196)
T ss_pred CccccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hhc----c-------
Confidence 345677899999999999996 5899999999 9 9999999999876 8999999875 111 0
Q ss_pred CcCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeecCH-HHH
Q 010874 168 TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDY-MDF 233 (498)
Q Consensus 168 ~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~dl-~~l 233 (498)
+. ++++...+.. ..|...++..++... ..+.++|+.||+ +...++ ..+
T Consensus 63 --~~---~~~v~d~~~~-------~~gpl~gi~~~l~~~------~~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 63 --FN---APFLLEKESD-------LFSPLFGIINAFLTL------QTPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred --cC---CcEEecCCCC-------CCCcHHHHHHHHHhc------CCCeEEEEecCcCcCCHHHHHHH
Confidence 11 2233221111 135555665554322 247899999999 435443 444
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-11 Score=128.89 Aligned_cols=91 Identities=12% Similarity=0.297 Sum_probs=80.8
Q ss_pred CCCCCCCCccCCCeEec-CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCC
Q 010874 384 KTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG 461 (498)
Q Consensus 384 ~~~i~~~~~i~~~~~i~-~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~ 461 (498)
...+..++.|+.+++|+ ++.|.||+||.||.|| ++.|++|.||.+|+||.||+|++|+|+++
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~---------------- 390 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD---------------- 390 (673)
T ss_pred hccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC----------------
Confidence 34556677788888884 7999999999999999 99999999999999999999999999999
Q ss_pred cccEEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 010874 462 KVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 462 ~~~v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~~ 493 (498)
|+|++++.+ .+||||-++.+|++.++.-.
T Consensus 391 ---v~i~~~~~l~~g~vl~~~VVv~~~~~l~~n 420 (673)
T KOG1461|consen 391 ---VKIGEGAILKPGSVLGFGVVVGRNFVLPKN 420 (673)
T ss_pred ---cEeCCCcccCCCcEEeeeeEeCCCcccccc
Confidence 999999999 57999999999998877544
|
|
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.5e-11 Score=94.17 Aligned_cols=75 Identities=23% Similarity=0.384 Sum_probs=64.3
Q ss_pred cCCCeEe-cCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCC
Q 010874 393 FLPPTKI-DNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (498)
Q Consensus 393 i~~~~~i-~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~ 470 (498)
+.+.+.| .++.|.+++||++|.|+ ++.|++|+|+++|+|+++|.|.+++++++ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCC
Confidence 4556666 35777789999999998 88999999999999999999999999988 899999
Q ss_pred cEEee-eEECCCCEECC
Q 010874 471 TKIRN-CIIDKNVKIGK 486 (498)
Q Consensus 471 ~~i~~-~iI~~~~~Ig~ 486 (498)
+.+.+ ++|+++++|++
T Consensus 63 ~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 63 VRVVNLCIIGDDVVVED 79 (79)
T ss_pred CEEcCCeEECCCeEECc
Confidence 99987 88888888874
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.5e-10 Score=114.95 Aligned_cols=120 Identities=16% Similarity=0.190 Sum_probs=83.8
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
|+++.+||||||.|+||. ..||+|+|++|+ |||+|+++.+.. .+++|+|++....+.+.+++ ..
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~-----~~----- 66 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLF-----PG----- 66 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhc-----cC-----
Confidence 557899999999999995 368999999999 999999999975 59999997765544332221 10
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeecC-HHHHHHHHHHcCCC
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRDAD 243 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~d-l~~ll~~h~~~~ad 243 (498)
+.++..... + ..|..++++.++..++ .+.++++.||+ +...+ +..+++.+.+.+++
T Consensus 67 ---~~~i~d~~~-g------~~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 67 ---LPVYPDILP-G------FQGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred ---CcEEecCCC-C------CCChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 122221111 1 1488899998876653 36799999998 44444 56777665555544
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-11 Score=120.88 Aligned_cols=69 Identities=20% Similarity=0.435 Sum_probs=67.0
Q ss_pred ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEE
Q 010874 406 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 484 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~I 484 (498)
+++|+++|.|+ ++.|+.|+||.+|.||+.++|.+|++|++ |.||+++.|.|||||.+|+|
T Consensus 334 d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~n-------------------V~vg~G~~IensIIg~gA~I 394 (433)
T KOG1462|consen 334 DSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDN-------------------VVVGDGVNIENSIIGMGAQI 394 (433)
T ss_pred hhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecC-------------------cEecCCcceecceeccccee
Confidence 79999999999 89999999999999999999999999999 99999999999999999999
Q ss_pred CCCcEEeCC
Q 010874 485 GKDVVIVNK 493 (498)
Q Consensus 485 g~~~~i~~~ 493 (498)
|+|+.+.|+
T Consensus 395 g~gs~L~nC 403 (433)
T KOG1462|consen 395 GSGSKLKNC 403 (433)
T ss_pred cCCCeeeee
Confidence 999999885
|
|
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-09 Score=102.40 Aligned_cols=216 Identities=15% Similarity=0.161 Sum_probs=122.1
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~-sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
+.|||||||.|+||. ...||.+++++|+ |+|.|+|+.+.+ ..+++|+|++........+.+... .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----------~ 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----------K 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH----------T
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC----------C
Confidence 469999999999997 4689999999999 999999999988 478999999986653332332221 1
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCCeEEEEEec
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
.+.++..- ..-.++++.++..+.+ ..+.++|--|== +.. ..+.++++..++ +.+..+...|+
T Consensus 67 ~v~iv~GG-----------~tR~~SV~ngL~~l~~----~~d~VlIHDaaRPfv~~~~i~~~i~~~~~-~~~aai~~~p~ 130 (221)
T PF01128_consen 67 KVKIVEGG-----------ATRQESVYNGLKALAE----DCDIVLIHDAARPFVSPELIDRVIEAARE-GHGAAIPALPV 130 (221)
T ss_dssp TEEEEE-------------SSHHHHHHHHHHCHHC----TSSEEEEEETTSTT--HHHHHHHHHHHHH-TCSEEEEEEE-
T ss_pred CEEEecCC-----------hhHHHHHHHHHHHHHc----CCCEEEEEccccCCCCHHHHHHHHHHHHh-hcCcEEEEEec
Confidence 25555421 1345889998887762 123344432221 222 236777777655 23345556666
Q ss_pred CCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCc
Q 010874 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~d 331 (498)
.+ .+...+++|.|....+.. .+...| -=-.|+.+.|.+..+.......+
T Consensus 131 ~D------Tik~v~~~~~v~~tldR~---~l~~~Q----------------------TPQ~F~~~~l~~a~~~a~~~~~~ 179 (221)
T PF01128_consen 131 TD------TIKRVDDDGFVTETLDRS---KLWAVQ----------------------TPQAFRFELLLEAYEKADEEGFE 179 (221)
T ss_dssp SS------EEEEESTTSBEEEEETGG---GEEEEE----------------------EEEEEEHHHHHHHHHTHHHHTHH
T ss_pred cc------cEEEEecCCcccccCCHH---Heeeec----------------------CCCeecHHHHHHHHHHHHhcCCC
Confidence 54 355666678777654321 111111 12567778777766543211122
Q ss_pred hhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHh
Q 010874 332 FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 332 f~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~l 371 (498)
+..|.--....+.+++...-+..-+-|.||+|+..|...|
T Consensus 180 ~tDdasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 180 FTDDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp HSSHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred ccCHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 2222111111245555544444567899999999998765
|
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B .... |
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-09 Score=104.73 Aligned_cols=115 Identities=23% Similarity=0.281 Sum_probs=78.8
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCc--hhHHHHHHhhccCCCCcCCCC
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNS--ASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~--~~l~~hl~~~~~~~~~~~~~~ 173 (498)
|||||+|.++||. +|.|+|++|+ |||+|+++.+..++ +++|+|+++... +.+.+++. . ++
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~-~-------~~-- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAK-K-------LG-- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHH-H-------cC--
Confidence 7999999999994 3999999999 99999999999987 899999998765 45554443 1 11
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeE
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADIT 245 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~t 245 (498)
++++..... + .+..+...++. ...+.++++.||+ +. ...+..+++.+.+.+.+++
T Consensus 65 -v~~v~~~~~----------~---~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 -VKVFRGSEE----------D---VLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred -CeEEECCch----------h---HHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 344432211 1 12222222221 1347899999999 33 4457889988876666544
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.4e-10 Score=104.67 Aligned_cols=123 Identities=16% Similarity=0.201 Sum_probs=84.9
Q ss_pred EEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeE
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V 175 (498)
.+||||||.|+||.. +|.|++++|+ |||+|+++.+.+.++++|+|++++..+.+ +.+.+.... . ..+
T Consensus 2 ~~vILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~-~~~~~~~~~---~---~~~ 68 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE-----NKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHL-SWLDPYLLA---D---ERI 68 (190)
T ss_pred eEEEEcCCccccCCC-----CceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchh-hhhhHhhhc---C---CCe
Confidence 589999999999973 7999999999 99999999988889999999998765432 112111111 1 114
Q ss_pred EEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeec-CHHHHHHHHHHcCC
Q 010874 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDA 242 (498)
Q Consensus 176 ~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~-dl~~ll~~h~~~~a 242 (498)
.++.... |..|.+.+++.++..+.+ ...+.++++.||+ +... .+..+++...+...
T Consensus 69 ~~~~~~~--------~~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~ 126 (190)
T TIGR03202 69 MLVCCRD--------ACEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKRRPD 126 (190)
T ss_pred EEEECCC--------hhhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCC
Confidence 4433221 235888999999876531 1347899999999 3343 46677766544333
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-08 Score=98.29 Aligned_cols=222 Identities=17% Similarity=0.171 Sum_probs=132.3
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc-CCCeEEEEeccCchh-HHHHHHhhccCCCCc
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSAS-LNRHIARTYFGNGTN 169 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~~~-l~~hl~~~~~~~~~~ 169 (498)
+..+.+||||||.|+||.. ..||.+++++|+ |||+|+++.+..+ .|++|+|+++..... +.++.. +
T Consensus 2 ~~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~--~------ 69 (230)
T COG1211 2 RMMVSAVILAAGFGSRMGN---PVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK--L------ 69 (230)
T ss_pred CceEEEEEEcCccccccCC---CCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh--h------
Confidence 3567899999999999995 799999999999 9999999999885 589999999874332 222221 1
Q ss_pred CCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEE
Q 010874 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITIS 247 (498)
Q Consensus 170 ~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~ 247 (498)
.....|+++..- ..-.++++.++..+.. ...+-|||--+== +....+.++++...+. ...+.
T Consensus 70 ~~~~~v~~v~GG-----------~~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~--~aai~ 133 (230)
T COG1211 70 SADKRVEVVKGG-----------ATRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIELADKY--GAAIL 133 (230)
T ss_pred ccCCeEEEecCC-----------ccHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHHhhccC--CcEEE
Confidence 111235655421 2456889988877752 1123344433321 2334467777444333 34556
Q ss_pred EEecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC
Q 010874 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (498)
Q Consensus 248 ~~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~ 327 (498)
+.|+.+ .+...+++|.|.+...... +...| .| -.|+.+.|.+.++....
T Consensus 134 alpv~D------Tik~~~~~~~i~~t~~R~~---l~~~Q--------TP--------------Q~F~~~~L~~a~~~a~~ 182 (230)
T COG1211 134 ALPVTD------TLKRVDADGNIVETVDRSG---LWAAQ--------TP--------------QAFRLELLKQALARAFA 182 (230)
T ss_pred EeeccC------cEEEecCCCCeeeccChhh---hhhhh--------CC--------------ccccHHHHHHHHHHHHh
Confidence 666654 3444555666765532211 11011 11 35677777766664433
Q ss_pred CCCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhh
Q 010874 328 TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 328 ~~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll 372 (498)
...++..|.--.....+++....=+-+-+-|.||+|+..|+..+-
T Consensus 183 ~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~ 227 (230)
T COG1211 183 EGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILR 227 (230)
T ss_pred cCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhc
Confidence 333333332211222455655444446789999999999987654
|
|
| >PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.4e-09 Score=109.42 Aligned_cols=113 Identities=9% Similarity=0.169 Sum_probs=76.8
Q ss_pred CCCCCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCC
Q 010874 89 RVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGT 168 (498)
Q Consensus 89 ~~~~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~ 168 (498)
+.++..+.+||||||+|+||. .+|+|+|++|+ |||+|+++.+.. .+++|+|+++..... .+. .
T Consensus 169 ~~~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~-~~~~vvV~~~~~~~~---~~~-~------ 231 (369)
T PRK14490 169 RAEEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRP-HCQEVFISCRAEQAE---QYR-S------ 231 (369)
T ss_pred ccccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHh-hCCEEEEEeCCchhh---HHh-h------
Confidence 445567899999999999997 48999999999 999999999976 478898877654221 111 1
Q ss_pred cCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeecC-HHHHHHH
Q 010874 169 NFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQS 236 (498)
Q Consensus 169 ~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~d-l~~ll~~ 236 (498)
++ +.++.... ++ .|...++..++... ..+.++++.||+ +.+.+ +..+++.
T Consensus 232 -~~---v~~i~d~~-~~-------~Gpl~gi~~al~~~------~~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 232 -FG---IPLITDSY-LD-------IGPLGGLLSAQRHH------PDAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred -cC---CcEEeCCC-CC-------CCcHHHHHHHHHhC------CCCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 11 34443222 11 47667777765443 246799999999 44444 4555543
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.3e-10 Score=102.33 Aligned_cols=90 Identities=16% Similarity=0.333 Sum_probs=73.7
Q ss_pred CCCCCCCCccCCCeEe-cCeeee-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhc
Q 010874 384 KTPFYTSPRFLPPTKI-DNCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLA 459 (498)
Q Consensus 384 ~~~i~~~~~i~~~~~i-~~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~ 459 (498)
...+...+.+++++.| .++.|. +++||++|.|+ ++.|. +++||++|.|+++++|.+|+++++
T Consensus 11 ~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~-------------- 76 (163)
T cd05636 11 GVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG-------------- 76 (163)
T ss_pred CCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC--------------
Confidence 3344444555555666 345554 69999999998 88886 799999999999999999999988
Q ss_pred CCcccEEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 460 EGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 460 ~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
+.|++++.+.+|+|++++.|++++.+.+
T Consensus 77 -----~~I~~~~~i~~siIg~~~~I~~~~~i~~ 104 (163)
T cd05636 77 -----TKVPHLNYVGDSVLGENVNLGAGTITAN 104 (163)
T ss_pred -----CEeccCCEEecCEECCCCEECCCcEEcc
Confidence 8999999999999999999999998865
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.6e-09 Score=105.72 Aligned_cols=216 Identities=18% Similarity=0.258 Sum_probs=130.9
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecC---CcchhHHHHHHHHHhcC-----------CCeEEEEec-cCchhHHH
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINSG-----------INKIFVLTQ-FNSASLNR 157 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~---G~~pLId~~L~~l~~sG-----------i~~I~Vv~~-~~~~~l~~ 157 (498)
.++.+||||||.|||| +...||+|+||+ |+ |++++.++.+...+ .-.++|+|+ +..+.+.+
T Consensus 14 ~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~ 89 (323)
T cd04193 14 GKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRK 89 (323)
T ss_pred CCEEEEEECCCccccc---CCCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHH
Confidence 4688999999999999 578899999998 68 99999999998742 124567787 77888888
Q ss_pred HHHh-hccCCCCc----CCCCeEEEecccCCC-CC--CC-CccccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCcee-
Q 010874 158 HIAR-TYFGNGTN----FGDGFVEVLAATQTP-GE--SG-KNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHL- 225 (498)
Q Consensus 158 hl~~-~~~~~~~~----~~~~~V~v~~~~q~~-~~--~~-~~~~~Gta~Alr~~~~--~i~~~~~~~~e~~Lvl~GD~l- 225 (498)
++.+ .||+.... |....+-.+..+... -+ .. .-.+.|.|+....... .+++......+++.+.+-|.+
T Consensus 90 ~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L 169 (323)
T cd04193 90 FFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNIL 169 (323)
T ss_pred HHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccc
Confidence 8875 23442110 111111111110000 00 00 1125688888776643 455555567799999999994
Q ss_pred eecCHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEE-EECCCCCEEEEEeCCCccccccccccccccCCCccccccCCc
Q 010874 226 YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLV-KIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPY 304 (498)
Q Consensus 226 ~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v-~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (498)
...---.++-.|.++++++.+-+.+...+. ..-|.+ ..|..-+++.+.|-|....... . +.+- ...+
T Consensus 170 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-ekvG~l~~~~g~~~vvEysel~~~~~~~~-~-~~g~---------l~f~ 237 (323)
T cd04193 170 VKVADPVFIGFCISKGADVGAKVVRKRYPT-EKVGVVVLVDGKPQVVEYSEISDELAEKR-D-ADGE---------LQYN 237 (323)
T ss_pred ccccCHHHhHHHHHcCCceEEEEEECCCCC-CceeEEEEECCeEEEEEeecCCHHHHhcc-C-cCCc---------Eecc
Confidence 433224567788889999988766554322 234444 4444345666666554322110 0 0000 0123
Q ss_pred ceeeeEEEEcHHHHHHHHHh
Q 010874 305 VASMGVYVFKKDVLFKLLRW 324 (498)
Q Consensus 305 l~~~GIYif~~~vL~~ll~~ 324 (498)
..+..+.+|+-+.|.++++.
T Consensus 238 ~~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 238 AGNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred cchHhhheeCHHHHHHHHhh
Confidence 44566788898888877643
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. |
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.4e-10 Score=105.59 Aligned_cols=103 Identities=23% Similarity=0.318 Sum_probs=66.1
Q ss_pred CCccCCCeEe-cCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-HHhhcCCcccE
Q 010874 390 SPRFLPPTKI-DNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLAEGKVPI 465 (498)
Q Consensus 390 ~~~i~~~~~i-~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~s~l~~~~~~v 465 (498)
.+.++++++| .++.|.++.||++|.|+ ++.+++++||+++.|++++.|. ++++.++..++...++ .+.++++ +
T Consensus 33 ~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~---~ 109 (193)
T cd03353 33 KTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEG---S 109 (193)
T ss_pred cCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCC---C
Confidence 3344444444 23556667777777777 6777777777777777777775 4555555444444443 3445555 5
Q ss_pred EeCCCcEEeeeEECCCCEECCCcEEeCCCC
Q 010874 466 GVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 466 ~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
.|++.+++.+|+||+++.||+++.+.+.++
T Consensus 110 ~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~ 139 (193)
T cd03353 110 KANHLSYLGDAEIGEGVNIGAGTITCNYDG 139 (193)
T ss_pred EecccceecccEECCCCEEcCceEEeccCC
Confidence 666666777788888888888877776554
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.6e-10 Score=88.32 Aligned_cols=74 Identities=19% Similarity=0.390 Sum_probs=51.7
Q ss_pred cCCCeEec-CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCC
Q 010874 393 FLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (498)
Q Consensus 393 i~~~~~i~-~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~ 470 (498)
++++++|. ++.|.+++|+++|.|+ ++.|.+|+|+++++|+++++|.+++++++ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~-------------------~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG-------------------AVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCC-------------------CEECCC
Confidence 34555553 4666677777788777 67777778888888888888877777777 777777
Q ss_pred cEEe-eeEECCCCEEC
Q 010874 471 TKIR-NCIIDKNVKIG 485 (498)
Q Consensus 471 ~~i~-~~iI~~~~~Ig 485 (498)
++|. +++|+++++||
T Consensus 63 ~~i~~~~~v~~~~~ig 78 (79)
T cd05787 63 CTIPPGSLISFGVVIG 78 (79)
T ss_pred CEECCCCEEeCCcEeC
Confidence 6665 45666666555
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.3e-10 Score=90.01 Aligned_cols=66 Identities=15% Similarity=0.464 Sum_probs=60.5
Q ss_pred EEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECC
Q 010874 408 IISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (498)
Q Consensus 408 ~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~ 486 (498)
.||++|.|+ ++.|.+++||++|.|+++|+|++++++++ +.|++++.|.+|+|++++.|++
T Consensus 1 ~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~ 61 (81)
T cd04652 1 LVGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGE 61 (81)
T ss_pred CccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECC
Confidence 378889998 78888999999999999999999999988 8999999999999999999999
Q ss_pred CcEEeC
Q 010874 487 DVVIVN 492 (498)
Q Consensus 487 ~~~i~~ 492 (498)
++.+.+
T Consensus 62 ~~~v~~ 67 (81)
T cd04652 62 KCKLKD 67 (81)
T ss_pred CCEEcc
Confidence 998876
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.1e-10 Score=89.04 Aligned_cols=66 Identities=26% Similarity=0.597 Sum_probs=61.7
Q ss_pred EEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECC
Q 010874 408 IISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (498)
Q Consensus 408 ~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~ 486 (498)
+||++|.|+ ++.|.+|+||++|+|++++.|++++++++ +.|++++.|.+|+|++++.|++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~ 61 (79)
T cd03356 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGE 61 (79)
T ss_pred CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECC
Confidence 478999998 78888999999999999999999999998 8999999999999999999999
Q ss_pred CcEEeC
Q 010874 487 DVVIVN 492 (498)
Q Consensus 487 ~~~i~~ 492 (498)
++.+.+
T Consensus 62 ~~~i~~ 67 (79)
T cd03356 62 NVRVVN 67 (79)
T ss_pred CCEEcC
Confidence 998876
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=88.18 Aligned_cols=73 Identities=19% Similarity=0.319 Sum_probs=58.5
Q ss_pred CCeEe-cCeeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCc
Q 010874 395 PPTKI-DNCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (498)
Q Consensus 395 ~~~~i-~~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~ 471 (498)
|+++| .++.|. +++|+++|.|+ ++.|.+|+|+++++|+++++|.+++++++ +.|++++
T Consensus 4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~~ 64 (80)
T cd05824 4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRWT 64 (80)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCCc
Confidence 44445 234453 68899999998 88889999999999999999999999888 8999988
Q ss_pred EEee-eEECCCCEECC
Q 010874 472 KIRN-CIIDKNVKIGK 486 (498)
Q Consensus 472 ~i~~-~iI~~~~~Ig~ 486 (498)
.+.+ ++|+++++|+.
T Consensus 65 ~~~~~~~ig~~~~i~~ 80 (80)
T cd05824 65 RLENVTVLGDDVTIKD 80 (80)
T ss_pred EEecCEEECCceEECC
Confidence 8876 77887777763
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-09 Score=87.29 Aligned_cols=66 Identities=18% Similarity=0.404 Sum_probs=60.1
Q ss_pred EEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECC
Q 010874 408 IISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (498)
Q Consensus 408 ~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~ 486 (498)
+||++|.|+ ++.|.+|+||++|.|+++++|.+++++++ +.|+++++|.+++|+++++|++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~ 61 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGK 61 (79)
T ss_pred CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECC
Confidence 478899998 78888999999999999999999999998 8999999999999999999998
Q ss_pred CcEEeC
Q 010874 487 DVVIVN 492 (498)
Q Consensus 487 ~~~i~~ 492 (498)
++.+.+
T Consensus 62 ~~~i~~ 67 (79)
T cd05787 62 GCTIPP 67 (79)
T ss_pred CCEECC
Confidence 888764
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.5e-10 Score=101.13 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=53.1
Q ss_pred CCCCCCCCCccCCCeEe-------cCeeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhH
Q 010874 383 PKTPFYTSPRFLPPTKI-------DNCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESE 453 (498)
Q Consensus 383 ~~~~i~~~~~i~~~~~i-------~~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~ 453 (498)
+...+.+++.+.++++| .++.|. +++||++|.|+ ++.|.+|+||++++|++++++.+++++++..+++.+.
T Consensus 22 ~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~ 101 (163)
T cd05636 22 EGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTI 101 (163)
T ss_pred CCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcE
Confidence 33444444444444444 235555 68999999999 8899999999999999999999999998877776654
Q ss_pred H
Q 010874 454 I 454 (498)
Q Consensus 454 ~ 454 (498)
+
T Consensus 102 i 102 (163)
T cd05636 102 T 102 (163)
T ss_pred E
Confidence 3
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=96.03 Aligned_cols=113 Identities=16% Similarity=0.212 Sum_probs=77.4
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
+.+|.+||||||.++|| .+|+|++++|+ |||+|+++.|....- .++|....+.+. +. .++
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~---------~~g 61 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YA---------EFG 61 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hh---------ccC
Confidence 56789999999999999 57999999999 999999999987654 555555443221 11 122
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeecCH-HHHHHHHHHcC
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDY-MDFIQSHVDRD 241 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~dl-~~ll~~h~~~~ 241 (498)
++++..... + .|...+++.++..+. .+.++++.||+ +...++ ..+.+...+.+
T Consensus 62 ---~~vv~D~~~-------~-~GPL~Gi~~al~~~~------~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 62 ---LPVVPDELP-------G-FGPLAGILAALRHFG------TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred ---CceeecCCC-------C-CCCHHHHHHHHHhCC------CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 344443221 1 288889998876653 57999999999 444443 55555443333
|
|
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-08 Score=97.32 Aligned_cols=214 Identities=14% Similarity=0.149 Sum_probs=129.7
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecC---CcchhHHHHHHHHHh--------cCCCeEEEEeccCchhHHHHHHhhc
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCIN--------SGINKIFVLTQFNSASLNRHIARTY 163 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~---G~~pLId~~L~~l~~--------sGi~~I~Vv~~~~~~~l~~hl~~~~ 163 (498)
+.+||||||.||||. .+.||+|+||+ |+ |+|++.++++.. .+|..+++...+..+++.+++.+..
T Consensus 1 va~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 1 VAVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred CEEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 358999999999995 68999999999 99 999999999976 3467777777788888999996422
Q ss_pred cCCCC--cCCCCeEEEeccc-CC-CCCCC--CccccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceee-ec-CHHHH
Q 010874 164 FGNGT--NFGDGFVEVLAAT-QT-PGESG--KNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLY-RM-DYMDF 233 (498)
Q Consensus 164 ~~~~~--~~~~~~V~v~~~~-q~-~~~~~--~~~~~Gta~Alr~~~--~~i~~~~~~~~e~~Lvl~GD~l~-~~-dl~~l 233 (498)
+..+. .|..+.+-.+... .. ..+.. .-.+-|.||.+.... ..+++.+....+++.+.+.|.+. .. |. .+
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP-~~ 155 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADP-LF 155 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCH-HH
Confidence 11110 0111111111110 00 00001 112568888877653 34555445677899999999844 44 43 36
Q ss_pred HHHHHHcCCCeEEEEEecCCCCCCCceEEEECCCCC--EEEEEeCCCcccccc---ccc-cccccCCCccccccCCccee
Q 010874 234 IQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKA---MQV-DTSLLGFSPQEARKCPYVAS 307 (498)
Q Consensus 234 l~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d~~gr--V~~~~EKp~~~~~~~---~~~-~~~~~~~~~~~~~~~~~l~~ 307 (498)
+-.+...++++.+-+.+....+ ..-|++...++|+ ++.+.|-|....... ..+ +.+ .......+
T Consensus 156 lG~~~~~~~~~~~kvv~K~~~d-~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~~~---------~~~~~~~n 225 (266)
T cd04180 156 IGIAIQNRKAINQKVVPKTRNE-ESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDID---------DAPFFLFN 225 (266)
T ss_pred HHHHHHcCCCEEEEEEECCCCC-CeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCCCC---------ceeeccce
Confidence 6777778888887666554322 2346555432355 555655443221100 000 011 11346789
Q ss_pred eeEEEEcHHHHHHHHH
Q 010874 308 MGVYVFKKDVLFKLLR 323 (498)
Q Consensus 308 ~GIYif~~~vL~~ll~ 323 (498)
+...+|+-+.+.++++
T Consensus 226 ~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 226 TNNLINFLVEFKDRVD 241 (266)
T ss_pred EEEEEEEHHHHHHHHH
Confidence 9999999999887764
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-09 Score=89.72 Aligned_cols=68 Identities=10% Similarity=0.214 Sum_probs=61.3
Q ss_pred ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCE
Q 010874 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK 483 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~ 483 (498)
+++||++|.|+ ++.|. +++||++|.||. +|++|++++. +.|+++++|.+++||++++
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCE
Confidence 68899999998 78886 699999999974 7899999998 8999999999999999999
Q ss_pred ECCCcEEeCCC
Q 010874 484 IGKDVVIVNKD 494 (498)
Q Consensus 484 Ig~~~~i~~~~ 494 (498)
||+++.+.|-.
T Consensus 88 ig~~~~~~~~~ 98 (101)
T cd05635 88 LGAGTNNSDLK 98 (101)
T ss_pred ECCCceecccc
Confidence 99999998754
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.4e-09 Score=96.70 Aligned_cols=92 Identities=14% Similarity=0.281 Sum_probs=64.8
Q ss_pred CCCCCCCCCCccCCCeEe-cCeeee----ceEEcCCCEEC-ceEE-----eccEECCCCEECCCCEEcceEEeCCccccc
Q 010874 382 DPKTPFYTSPRFLPPTKI-DNCRIK----DAIISHGCFLR-ECTV-----EHSIVGERSRLDYGVELKDTVMLGADYYQT 450 (498)
Q Consensus 382 ~~~~~i~~~~~i~~~~~i-~~~~I~----~s~Ig~~~~I~-~~~v-----~~siIg~~~~Ig~~~~i~~svi~~~~~~~~ 450 (498)
++...+...+.+++++.| .+|.|. ++.||++|.|+ +|.| .+|+||++|+|+++++|.+++|.++
T Consensus 10 ~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~----- 84 (155)
T cd04745 10 HPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRN----- 84 (155)
T ss_pred CCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCC-----
Confidence 344444444555555555 345554 36788888887 6777 4678888888888888888877777
Q ss_pred hhHHHHhhcCCcccEEeCCCcEEee-eEECCCCEECCCcEEeC
Q 010874 451 ESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 451 ~~~~~s~l~~~~~~v~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~ 492 (498)
+.||.++.|.+ ++|++++.|++++.+..
T Consensus 85 --------------~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~ 113 (155)
T cd04745 85 --------------ALVGMNAVVMDGAVIGEESIVGAMAFVKA 113 (155)
T ss_pred --------------CEECCCCEEeCCCEECCCCEECCCCEeCC
Confidence 78888888864 78888888888877754
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.7e-09 Score=99.03 Aligned_cols=91 Identities=13% Similarity=0.271 Sum_probs=59.3
Q ss_pred CCCCCCCCCccCCCeEec-Ceeee----ceEEcCCCEEC-ceEE-----eccEECCCCEECCCCEEcceEEeCCccccch
Q 010874 383 PKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTV-----EHSIVGERSRLDYGVELKDTVMLGADYYQTE 451 (498)
Q Consensus 383 ~~~~i~~~~~i~~~~~i~-~~~I~----~s~Ig~~~~I~-~~~v-----~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~ 451 (498)
+.+.+...+.+++++.|. +|.|. +.+||++|.|+ +|+| .+|+||++|+|+++|.|.+|+|.++
T Consensus 19 ~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~------ 92 (192)
T TIGR02287 19 PTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRN------ 92 (192)
T ss_pred CCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCC------
Confidence 333333333344444442 34443 35677777777 6766 4688888888888888888888777
Q ss_pred hHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 452 SEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 452 ~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+.||.++.|. +++|++++.|++++.+..
T Consensus 93 -------------~~IG~ga~I~~g~~IG~~s~Vgags~V~~ 121 (192)
T TIGR02287 93 -------------ALVGMNAVVMDGAVIGENSIVAASAFVKA 121 (192)
T ss_pred -------------CEECCCcccCCCeEECCCCEEcCCCEECC
Confidence 6777777764 477777777777766654
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.2e-09 Score=84.42 Aligned_cols=65 Identities=18% Similarity=0.332 Sum_probs=56.5
Q ss_pred EcCCCEEC-ceEE-eccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECC
Q 010874 409 ISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (498)
Q Consensus 409 Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~ 486 (498)
|++++.|+ ++.| .+++||++|+||++|+|++++++++ +.|+++++|.+|++++++.|++
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 45666665 5555 4689999999999999999999998 8999999999999999999999
Q ss_pred CcEEeC
Q 010874 487 DVVIVN 492 (498)
Q Consensus 487 ~~~i~~ 492 (498)
++.+.+
T Consensus 63 ~~~~~~ 68 (80)
T cd05824 63 WTRLEN 68 (80)
T ss_pred CcEEec
Confidence 988765
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.3e-09 Score=98.27 Aligned_cols=95 Identities=16% Similarity=0.323 Sum_probs=66.0
Q ss_pred CccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHH--HHhhcCCcccE
Q 010874 391 PRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPI 465 (498)
Q Consensus 391 ~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~--~s~l~~~~~~v 465 (498)
+.+++++.|. .+.|. +++||+||+|+ ++.|.+++||++|.|++++.|.+++++++..++..+.+ .+.++++ +
T Consensus 16 v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~---~ 92 (193)
T cd03353 16 VEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEG---V 92 (193)
T ss_pred eEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCC---C
Confidence 3444444442 34444 68999999999 89999999999999999999999999988555554443 2444544 5
Q ss_pred EeCCCcEEeeeEECCCCEECCCc
Q 010874 466 GVGRNTKIRNCIIDKNVKIGKDV 488 (498)
Q Consensus 466 ~Ig~~~~i~~~iI~~~~~Ig~~~ 488 (498)
.|++++.+++++|+++++|+..+
T Consensus 93 ~Ig~~~~i~~s~ig~~~~i~~~~ 115 (193)
T cd03353 93 HIGNFVEIKKSTIGEGSKANHLS 115 (193)
T ss_pred EECCcEEEecceEcCCCEecccc
Confidence 56666666666666655554433
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.9e-09 Score=97.52 Aligned_cols=68 Identities=21% Similarity=0.494 Sum_probs=58.2
Q ss_pred ceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEE-----cceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEee
Q 010874 406 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVEL-----KDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i-----~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~ 475 (498)
+++||++|.|+ +|+|. ..+||++|.||++|.| .+|+|+++ +.||+++.|.+
T Consensus 26 ~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~-------------------~~Ig~~a~I~~ 86 (192)
T TIGR02287 26 DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN-------------------GHVGHGAILHG 86 (192)
T ss_pred eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC-------------------CEECCCCEEcC
Confidence 78889999998 78776 4699999999999999 56888887 89999999999
Q ss_pred eEECCCCEECCCcEEeC
Q 010874 476 CIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~ 492 (498)
|+|++++.||.++++.+
T Consensus 87 siIg~~~~IG~ga~I~~ 103 (192)
T TIGR02287 87 CIVGRNALVGMNAVVMD 103 (192)
T ss_pred CEECCCCEECCCcccCC
Confidence 99999999988877754
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-08 Score=103.18 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=49.7
Q ss_pred eEeecCCHHHHHHHHHHhhccCCC-ccccCCCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEE-eccEECCC
Q 010874 354 YWEDIGTIKSFYEANMALTKESPA-FHFYDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTV-EHSIVGER 428 (498)
Q Consensus 354 ~w~dIgt~~dy~~An~~ll~~~~~-~~~~~~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v-~~siIg~~ 428 (498)
.+.-+++|...+..-..++.+.++ ...++|.+.+.+++.+++++.|. ++.|. ++.||++|+|+ ++.| .+++||++
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~ 145 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG 145 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence 355678887666555555543322 23345555555555555555552 23332 35555555555 4444 24555555
Q ss_pred CEECCCCEEc-ceEEeCCccccc
Q 010874 429 SRLDYGVELK-DTVMLGADYYQT 450 (498)
Q Consensus 429 ~~Ig~~~~i~-~svi~~~~~~~~ 450 (498)
|.|+++|.|. +++|+++..+..
T Consensus 146 ~~I~~~~~I~~~~~IG~~~~I~~ 168 (324)
T TIGR01853 146 SRIHPNVVIYERVQLGKNVIIHS 168 (324)
T ss_pred ceECCCcEECCCCEECCCCEECC
Confidence 5555555554 444444433333
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-08 Score=93.05 Aligned_cols=68 Identities=19% Similarity=0.501 Sum_probs=55.7
Q ss_pred ceEEcCCCEEC-ceEEec----cEECCCCEECCCCEE-----cceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEee
Q 010874 406 DAIISHGCFLR-ECTVEH----SIVGERSRLDYGVEL-----KDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~~----siIg~~~~Ig~~~~i-----~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~ 475 (498)
++.||++|+|+ +|.|.. ++||++|.|+++|+| .+++|+++ +.|++++.+.+
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~-------------------~~Ig~~~~i~~ 78 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEEN-------------------GHIGHGAILHG 78 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCC-------------------CEECCCcEEEC
Confidence 78899999998 788864 899999999999999 67888887 77777777777
Q ss_pred eEECCCCEECCCcEEeC
Q 010874 476 CIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~ 492 (498)
|+||+++.||.++.|.+
T Consensus 79 ~~Ig~~~~Ig~~~~I~~ 95 (155)
T cd04745 79 CTIGRNALVGMNAVVMD 95 (155)
T ss_pred CEECCCCEECCCCEEeC
Confidence 77777777777776654
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.9e-09 Score=109.46 Aligned_cols=82 Identities=15% Similarity=0.239 Sum_probs=71.1
Q ss_pred CCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeC
Q 010874 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG 468 (498)
Q Consensus 390 ~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig 468 (498)
.+.|++++.|.+ .+.+|+||++|.|+ +|.|++|+|+++|+|+++|+|.+|+++++ +.||
T Consensus 293 ~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~-------------------~~i~ 352 (380)
T PRK05293 293 NSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN-------------------AVIG 352 (380)
T ss_pred cCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC-------------------CEEC
Confidence 334555555542 45689999999999 89999999999999999999999999998 8999
Q ss_pred CCcEEee-----eEECCCCEECCCcEEe
Q 010874 469 RNTKIRN-----CIIDKNVKIGKDVVIV 491 (498)
Q Consensus 469 ~~~~i~~-----~iI~~~~~Ig~~~~i~ 491 (498)
+++++++ .+||++++|+++++|.
T Consensus 353 ~~~~i~~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 353 DGVIIGGGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred CCCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence 9999987 8999999999998873
|
|
| >PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.7e-08 Score=99.22 Aligned_cols=109 Identities=8% Similarity=0.064 Sum_probs=76.4
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
.+.+||||||+|+||. .+|.|+|+.|+ ||++|+++.+.. .+++|+|+++... . ..+ . + .
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~-~~~~ViVv~~~~~--~-----~~~-~----~--~ 218 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAK-YCEQVFLSARPSQ--W-----QGT-P----L--E 218 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHh-hCCEEEEEeCchH--h-----hhc-c----c--c
Confidence 5789999999999997 48999999999 999999988865 4889988886421 1 000 0 0 0
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeecC-HHHHHHHH
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSH 237 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~d-l~~ll~~h 237 (498)
.+.++..... ..|...+|+.++.... .+.++++.||+ +...+ +..+++.+
T Consensus 219 ~v~~I~D~~~--------~~GPlagI~aaL~~~~------~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 219 NLPTLPDRGE--------SVGPISGILTALQSYP------GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred CCeEEeCCCC--------CCChHHHHHHHHHhCC------CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 1233332221 2699999999986542 35789999999 34444 56666654
|
|
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-06 Score=92.75 Aligned_cols=351 Identities=15% Similarity=0.175 Sum_probs=192.7
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecC-CcchhHHHHHHHHHh----cCCC-eEEEEeccCc-hhHHHHHHhhc-
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCIN----SGIN-KIFVLTQFNS-ASLNRHIARTY- 163 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~-G~~pLId~~L~~l~~----sGi~-~I~Vv~~~~~-~~l~~hl~~~~- 163 (498)
..++.+|.||||.||||. ..-||.++|+. |+ .++|..++++.. .|.+ ..+|.++++- +...+++.+ |
T Consensus 77 L~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~-sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k-~~ 151 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEK-YT 151 (469)
T ss_pred HhcEEEEEecCCcccccC---CCCCceeEEcCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHH-cC
Confidence 477899999999999998 47899999995 56 899999888764 3432 3477777654 557777753 4
Q ss_pred -cCCCC-cCCCCeEEEec-ccCC----CC-CCCCcc-ccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCceeeecCHHH
Q 010874 164 -FGNGT-NFGDGFVEVLA-ATQT----PG-ESGKNW-FQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLYRMDYMD 232 (498)
Q Consensus 164 -~~~~~-~~~~~~V~v~~-~~q~----~~-~~~~~~-~~Gta~Alr~~~~--~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ 232 (498)
+.... -|.+..+-.+. .... .+ .....| +.|.||....... .+++......+++.+.+.|.+...-=-.
T Consensus 152 ~~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~ 231 (469)
T PLN02474 152 NSNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLK 231 (469)
T ss_pred CCccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHH
Confidence 21111 01111111111 0000 00 011124 4677777665532 3444445677999999999976432245
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCceEEE-ECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEE
Q 010874 233 FIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVY 311 (498)
Q Consensus 233 ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~-~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIY 311 (498)
++..|.++++++++=+.+...++. +-|.+. .|..-+++.+.|-|...... .+ + .....+.+++.+
T Consensus 232 ~lg~~~~~~~e~~~ev~~Kt~~d~-kgG~l~~~dgk~~lvEysqvp~e~~~~---f~-~---------~~kf~~fNtnn~ 297 (469)
T PLN02474 232 ILNHLIQNKNEYCMEVTPKTLADV-KGGTLISYEGKVQLLEIAQVPDEHVNE---FK-S---------IEKFKIFNTNNL 297 (469)
T ss_pred HHHHHHhcCCceEEEEeecCCCCC-CccEEEEECCEEEEEEEecCCHHHHHh---hc-c---------cccceeeeeeeE
Confidence 788888899998887665443222 235443 34333577777766543210 00 0 112468899999
Q ss_pred EEcHHHHHHHHHhhCC--------CCCc---h--hhhhHHHHhhc-CceEEEEEc-ceEeecCCHHHHHHHHHHhhccCC
Q 010874 312 VFKKDVLFKLLRWRYP--------TSND---F--GSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKESP 376 (498)
Q Consensus 312 if~~~vL~~ll~~~~~--------~~~d---f--~~dii~~~i~~-~~I~~~~~~-~~w~dIgt~~dy~~An~~ll~~~~ 376 (498)
.|+-+.|.++++.... ...+ + .+-++-.+++- .+..++.++ ..+..+.+..|++.+..++.....
T Consensus 298 w~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~~ 377 (469)
T PLN02474 298 WVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVD 377 (469)
T ss_pred EEEHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhcc
Confidence 9999999887653210 0001 0 00112222222 234444443 236778888888888887765432
Q ss_pred CccccCCCCCCCCCC--ccCCCe-EecC--eeeeceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccch
Q 010874 377 AFHFYDPKTPFYTSP--RFLPPT-KIDN--CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTE 451 (498)
Q Consensus 377 ~~~~~~~~~~i~~~~--~i~~~~-~i~~--~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~ 451 (498)
..-...+.....+.+ .+.|.- ++.+ .++. +--..++ ..+=.|--++..|.++++++.++..+
T Consensus 378 ~~l~~~~~~~~~~~p~IeL~~~f~~v~~f~~rf~----~iPsl~~---~d~LtV~Gdv~fG~~v~l~G~v~i~~------ 444 (469)
T PLN02474 378 GFVIRNKARTNPSNPSIELGPEFKKVANFLSRFK----SIPSIVE---LDSLKVSGDVWFGSGIVLKGKVTITA------ 444 (469)
T ss_pred CeEEecCcccCCCCCcEEECcccccHHhHHHhcC----CCCCccc---CCeEEEeeeeEECCCcEEEEEEEEEc------
Confidence 221111111111111 111110 1110 1111 1111121 11235566788888888888888766
Q ss_pred hHHHHhhcCCcccEEeCCCcEEeeeEECCCC
Q 010874 452 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (498)
Q Consensus 452 ~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~ 482 (498)
++..+..|.+|+++.|++|..+.
T Consensus 445 --------~~~~~~~ip~g~~l~~~~~~~~~ 467 (469)
T PLN02474 445 --------KSGVKLEIPDGAVLENKDINGPE 467 (469)
T ss_pred --------CCCCeeecCCCcEecceeecccC
Confidence 23345789999999888776553
|
|
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.7e-08 Score=94.22 Aligned_cols=52 Identities=23% Similarity=0.299 Sum_probs=35.6
Q ss_pred ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 422 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 422 ~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+|+||+++.||+++.|.+++|.++ +.||.++.|. +++||+++.|++++.+..
T Consensus 71 ~siIg~~~~Ig~~a~i~g~vIG~~-------------------v~IG~ga~V~~g~~IG~~s~Vgags~V~~ 123 (196)
T PRK13627 71 DTIVGENGHIGHGAILHGCVIGRD-------------------ALVGMNSVIMDGAVIGEESIVAAMSFVKA 123 (196)
T ss_pred CCEECCCCEECCCcEEeeEEECCC-------------------CEECcCCccCCCcEECCCCEEcCCCEEeC
Confidence 466677777776666666666655 6777777663 477777777777777654
|
|
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-08 Score=92.55 Aligned_cols=92 Identities=15% Similarity=0.218 Sum_probs=58.2
Q ss_pred CCCCCCCCCCccCCCeEec-Ceeee----ceEEcCCCEEC-ceEEecc-----------EECCCCEECCCCEEcceEEeC
Q 010874 382 DPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTVEHS-----------IVGERSRLDYGVELKDTVMLG 444 (498)
Q Consensus 382 ~~~~~i~~~~~i~~~~~i~-~~~I~----~s~Ig~~~~I~-~~~v~~s-----------iIg~~~~Ig~~~~i~~svi~~ 444 (498)
++.+.+.....+++++.|. ++.|. +++||++|.|+ ++.|.++ .||+++.|+.+++|.+++|.+
T Consensus 9 ~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd 88 (164)
T cd04646 9 CQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGN 88 (164)
T ss_pred CCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECC
Confidence 3333344444455555552 35552 46788888887 7777643 577777777788887777777
Q ss_pred CccccchhHHHHhhcCCcccEEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 010874 445 ADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 445 ~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~ 492 (498)
+ +.||.++.| .+++|++++.||++++|..
T Consensus 89 ~-------------------~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~ 118 (164)
T cd04646 89 N-------------------NVFESKSFVGKNVIITDGCIIGAGCKLPS 118 (164)
T ss_pred C-------------------CEEeCCCEECCCCEECCCCEEeCCeEECC
Confidence 6 666666666 3566666666666666654
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.9e-08 Score=97.54 Aligned_cols=42 Identities=12% Similarity=0.017 Sum_probs=21.5
Q ss_pred cCCHHHHHHHHHHhhccCCC-cc------ccCCCCCCCCCCccCCCeEe
Q 010874 358 IGTIKSFYEANMALTKESPA-FH------FYDPKTPFYTSPRFLPPTKI 399 (498)
Q Consensus 358 Igt~~dy~~An~~ll~~~~~-~~------~~~~~~~i~~~~~i~~~~~i 399 (498)
..+|.-.+.....++.+.+. +. .+++.+.+..++.++++++|
T Consensus 78 ~~~P~~~fA~~~~~f~~~~~~~~~I~~~A~i~~~A~i~~~~~ig~~~vI 126 (338)
T COG1044 78 VKDPYLAFAKVAQLFYRPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVI 126 (338)
T ss_pred eCCchHHHHHHHHHhccCCccccccCccccccCcCccCCCCccCCCeEE
Confidence 45577667766666654322 22 33444444444444444444
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.5e-08 Score=90.72 Aligned_cols=121 Identities=20% Similarity=0.229 Sum_probs=80.5
Q ss_pred ceEeecCCHHHHHHHHHHhhccC-CCccccCCCCCCCCCCccCCCeEe-cCeeee-ceEEcCCCEEC-ceEEe-ccEECC
Q 010874 353 DYWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRFLPPTKI-DNCRIK-DAIISHGCFLR-ECTVE-HSIVGE 427 (498)
Q Consensus 353 ~~w~dIgt~~dy~~An~~ll~~~-~~~~~~~~~~~i~~~~~i~~~~~i-~~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~ 427 (498)
.++..++.++...+....+.+.. +...++.+...+.+.+.+++++.| .++.|. ++.||++|.|+ ++.|. +++||+
T Consensus 61 ~~iiai~~~~~~~~i~~~l~~~g~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~ 140 (201)
T TIGR03570 61 DLVVAIGDNKLRRRLFEKLKAKGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGD 140 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECC
Confidence 45666776666666655554432 222334444555555566666666 345554 47777777776 67774 578888
Q ss_pred CCEECCCCEEcc-eEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 428 RSRLDYGVELKD-TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 428 ~~~Ig~~~~i~~-svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+++|+.++.|.+ +.+.++ +.||.++.+. ++.|++++.|++++++.+
T Consensus 141 ~~~i~~~~~i~~~~~ig~~-------------------~~ig~~~~v~~~~~i~~~~~i~~~~~v~~ 188 (201)
T TIGR03570 141 YVHIAPGVTLSGGVVIGEG-------------------VFIGAGATIIQGVTIGAGAIVGAGAVVTK 188 (201)
T ss_pred CCEECCCCEEeCCcEECCC-------------------CEECCCCEEeCCCEECCCCEECCCCEECC
Confidence 888888877764 444444 7899888885 689999999999999865
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-08 Score=97.80 Aligned_cols=68 Identities=6% Similarity=0.184 Sum_probs=53.8
Q ss_pred eEEcCCCEEC-ceEEe-----------ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEE-
Q 010874 407 AIISHGCFLR-ECTVE-----------HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI- 473 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~-----------~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i- 473 (498)
.+||++|.|+ +|.|. +++||++|+||++|.|.+|+|.++ +.||.++.|
T Consensus 99 I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~-------------------v~IG~~svI~ 159 (246)
T PLN02472 99 ITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPE-------------------CIIGQHSILM 159 (246)
T ss_pred eEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCC-------------------CEECCCCEEC
Confidence 5667777777 66662 689999999999999999988888 788888877
Q ss_pred eeeEECCCCEECCCcEEeCC
Q 010874 474 RNCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 474 ~~~iI~~~~~Ig~~~~i~~~ 493 (498)
.+++|++++.|++++.+...
T Consensus 160 ~gavIg~~~~Ig~gsvV~~g 179 (246)
T PLN02472 160 EGSLVETHSILEAGSVLPPG 179 (246)
T ss_pred CCCEECCCCEECCCCEECCC
Confidence 46788888888888777643
|
|
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.2e-08 Score=97.17 Aligned_cols=95 Identities=13% Similarity=0.278 Sum_probs=65.1
Q ss_pred ccCCCCCCCCCCccCCCeEe-cCeeee----ceEEcCCCEEC-ceEEe-----------ccEECCCCEECCCCEEcceEE
Q 010874 380 FYDPKTPFYTSPRFLPPTKI-DNCRIK----DAIISHGCFLR-ECTVE-----------HSIVGERSRLDYGVELKDTVM 442 (498)
Q Consensus 380 ~~~~~~~i~~~~~i~~~~~i-~~~~I~----~s~Ig~~~~I~-~~~v~-----------~siIg~~~~Ig~~~~i~~svi 442 (498)
++++.+.+...+.|++++.| .+|.|. +++||++|.|+ +|.|. +|+||++|+||++|.|.+++|
T Consensus 60 ~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~I 139 (269)
T PLN02296 60 FVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTV 139 (269)
T ss_pred EECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEE
Confidence 33444444444445555555 245554 35788888888 77773 578999999999999988888
Q ss_pred eCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 010874 443 LGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 443 ~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 493 (498)
.++ +.||.++.|. ++.|++++.|++++.|...
T Consensus 140 gd~-------------------v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~ 172 (269)
T PLN02296 140 EDE-------------------AFVGMGATLLDGVVVEKHAMVAAGALVRQN 172 (269)
T ss_pred CCC-------------------cEECCCcEECCCeEECCCCEECCCCEEecC
Confidence 877 6777777764 5777777777777777654
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-08 Score=108.35 Aligned_cols=96 Identities=18% Similarity=0.295 Sum_probs=68.2
Q ss_pred CCccCCCeEec-Ceeee-------ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHH--HHhh
Q 010874 390 SPRFLPPTKID-NCRIK-------DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLL 458 (498)
Q Consensus 390 ~~~i~~~~~i~-~~~I~-------~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~--~s~l 458 (498)
++.+++++.|+ ++.|. +++||+||.|+ +|.|++|+||++|+|+++|.|.+++|+++..+++++.+ .+.+
T Consensus 263 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i 342 (456)
T PRK14356 263 SVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVL 342 (456)
T ss_pred cEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEE
Confidence 34556666774 46664 47899999998 88999999999999999999999999988666665554 3445
Q ss_pred cCCcccEEeCCCcEEeeeEECCCCEECCCc
Q 010874 459 AEGKVPIGVGRNTKIRNCIIDKNVKIGKDV 488 (498)
Q Consensus 459 ~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~ 488 (498)
+++ +.||+++.+.+++|+++++|+.++
T Consensus 343 g~~---~~ig~~~~i~~~~i~~~~~i~~~~ 369 (456)
T PRK14356 343 EEG---ARVGNFVEMKKAVLGKGAKANHLT 369 (456)
T ss_pred CCC---CEecCCceeeeeEecCCcEecccc
Confidence 555 566666666666666665554443
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-08 Score=107.65 Aligned_cols=97 Identities=14% Similarity=0.199 Sum_probs=62.9
Q ss_pred ccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHH---------HHhhc
Q 010874 392 RFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI---------ASLLA 459 (498)
Q Consensus 392 ~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~---------~s~l~ 459 (498)
.|+++++|+ .+.|. +++||++|.|+ ++.+.+++|++++.|+.++.+.+++|.++..++..+.+ .+.++
T Consensus 305 ~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig 384 (446)
T PRK14353 305 HVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIG 384 (446)
T ss_pred EECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEEC
Confidence 334444442 34554 68899999999 78889999999999999999998888888766665433 22333
Q ss_pred CCcccEEeCCCcEEe-eeEECCCCEECCCcEEe
Q 010874 460 EGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 460 ~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
++ +.||.++.|. ++.||+++.||+++++.
T Consensus 385 ~~---~~ig~~~~i~~~~~Ig~~~~ig~~s~v~ 414 (446)
T PRK14353 385 AG---AFIGSNSALVAPVTIGDGAYIASGSVIT 414 (446)
T ss_pred CC---cEECCCCEEeCCCEECCCCEECCCCEEC
Confidence 33 3444444332 45555555555555554
|
|
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.5e-08 Score=90.00 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=64.8
Q ss_pred ccCCCCCCCCCCccCCCeEec-Ceeeec----eEEcCCCEEC-ceEEec-----cEECCCCEECCCCEEcceEEeCCccc
Q 010874 380 FYDPKTPFYTSPRFLPPTKID-NCRIKD----AIISHGCFLR-ECTVEH-----SIVGERSRLDYGVELKDTVMLGADYY 448 (498)
Q Consensus 380 ~~~~~~~i~~~~~i~~~~~i~-~~~I~~----s~Ig~~~~I~-~~~v~~-----siIg~~~~Ig~~~~i~~svi~~~~~~ 448 (498)
++++.+.+...+.+++++.|. ++.|.. ++||++|.|+ +|.|.+ ++||+++.|+++++|.+++|.++
T Consensus 8 ~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~--- 84 (154)
T cd04650 8 YVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNY--- 84 (154)
T ss_pred EECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCC---
Confidence 344444444445555556553 455553 4888888888 777764 78899999998888888887777
Q ss_pred cchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 449 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 449 ~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+.|+.++.+. +++|++++.|++++.+..
T Consensus 85 ----------------~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~ 113 (154)
T cd04650 85 ----------------VIVGMGAILLNGAKIGDHVIIGAGAVVTP 113 (154)
T ss_pred ----------------CEEcCCCEEeCCCEECCCCEECCCCEECC
Confidence 6777777663 567777777777766654
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.9e-08 Score=99.53 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=45.2
Q ss_pred ecCCHHH-HHHHHHHhhccC--CCccccCCCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEECCCC
Q 010874 357 DIGTIKS-FYEANMALTKES--PAFHFYDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERS 429 (498)
Q Consensus 357 dIgt~~d-y~~An~~ll~~~--~~~~~~~~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~ 429 (498)
-+++|.. |..+...+..+. .....+++.+.+.+++.++++++|. ++.|. ++.||++|+|+ ++.|. ++.||++|
T Consensus 76 ~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~ 155 (343)
T PRK00892 76 VVKNPYLAFARLAQLFDPPATPSPAAGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADC 155 (343)
T ss_pred EeCCHHHHHHHHHHHhccccccccCCcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCC
Confidence 3567664 444544443222 1123455555565555555555553 34443 35555555555 44442 45555555
Q ss_pred EECCCCEEcceE-EeCCccccc
Q 010874 430 RLDYGVELKDTV-MLGADYYQT 450 (498)
Q Consensus 430 ~Ig~~~~i~~sv-i~~~~~~~~ 450 (498)
.|+++|.|.+.+ |+++..+.+
T Consensus 156 ~I~~~~~I~~~~~Ig~~~~I~~ 177 (343)
T PRK00892 156 RLHANVTIYHAVRIGNRVIIHS 177 (343)
T ss_pred EeCCCeEEcCCCEECCCCEECC
Confidence 555555554333 444433333
|
|
| >COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-07 Score=86.06 Aligned_cols=220 Identities=17% Similarity=0.189 Sum_probs=138.1
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~ 170 (498)
|++..|||+|-|.++|..- |-+.+++|+ |||.|+++++.+++ +++|+|-+ .++.+.+.- +. |
T Consensus 1 ~~~~iAiIpAR~gSKgI~~------KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A-~~-------y 63 (228)
T COG1083 1 MMKNIAIIPARGGSKGIKN------KNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEA-KK-------Y 63 (228)
T ss_pred CcceEEEEeccCCCCcCCc------cchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHH-HH-------h
Confidence 3556799999999999864 999999999 99999999999997 57776655 445554333 23 3
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEE
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISC 248 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~ 248 (498)
|. .+.+..+.....+ ...|-+++.++.+.+. ...+.++++.+-. +...++++.++.+.+...+..+.+
T Consensus 64 ga-k~~~~Rp~~LA~D-----~ast~~~~lh~le~~~----~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa 133 (228)
T COG1083 64 GA-KVFLKRPKELASD-----RASTIDAALHALESFN----IDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSA 133 (228)
T ss_pred Cc-cccccCChhhccC-----chhHHHHHHHHHHHhc----cccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEE
Confidence 31 1222222111110 0234455666655553 2334577777665 556789999999999888888888
Q ss_pred EecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC
Q 010874 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (498)
Q Consensus 249 ~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~ 328 (498)
.+.+.. .|-.... .+|.+..+.|.|..... +.-....+..+..+|+++++.|.+ .
T Consensus 134 ~e~e~~---p~k~f~~-~~~~~~~~~~~~~~~~r--------------rQ~Lpk~Y~~NgaiYi~~~~~l~e---~---- 188 (228)
T COG1083 134 VECEHH---PYKAFSL-NNGEVKPVNEDPDFETR--------------RQDLPKAYRENGAIYINKKDALLE---N---- 188 (228)
T ss_pred eecccc---hHHHHHh-cCCceeecccCCccccc--------------cccchhhhhhcCcEEEehHHHHhh---c----
Confidence 887641 1211122 34777777666532110 000112467788999999998853 1
Q ss_pred CCchhhhhHHHHhhcCceEEEEEcc-eEeecCCHHHHHHHHHHhhc
Q 010874 329 SNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 329 ~~df~~dii~~~i~~~~I~~~~~~~-~w~dIgt~~dy~~An~~ll~ 373 (498)
...|. .+...|..+. -..||++..||..|+..+..
T Consensus 189 ~~~f~----------~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 189 DCFFI----------PNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred Cceec----------CCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 11121 2344555553 36799999999999987754
|
|
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.5e-07 Score=95.29 Aligned_cols=215 Identities=19% Similarity=0.232 Sum_probs=128.0
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecC---CcchhHHHHHHHHHhc------------C-CCeEEEEe-ccCchhH
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS------------G-INKIFVLT-QFNSASL 155 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~---G~~pLId~~L~~l~~s------------G-i~~I~Vv~-~~~~~~l 155 (498)
.++.+||||||.||||+ ...||+|+||+ |+ ||+++.++++... + .-.++|++ .+..+.+
T Consensus 105 gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 45999999999999996 58999999995 88 9999999999864 1 12455555 4777888
Q ss_pred HHHHHhh-ccCCCCc----CCCCeEEEeccc-CCC--CCCC-C-ccccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCc
Q 010874 156 NRHIART-YFGNGTN----FGDGFVEVLAAT-QTP--GESG-K-NWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGD 223 (498)
Q Consensus 156 ~~hl~~~-~~~~~~~----~~~~~V~v~~~~-q~~--~~~~-~-~~~~Gta~Alr~~~~--~i~~~~~~~~e~~Lvl~GD 223 (498)
.+++.+. ||+.... |..+.+-.+... -.. .+.. - ..+.|.|+..+.... .+++......+++.+.+.|
T Consensus 181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 260 (482)
T PTZ00339 181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID 260 (482)
T ss_pred HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence 8888642 3432110 111111111100 000 0000 0 124688887776532 3555555677999999999
Q ss_pred eee-ecCHHHHHHHHHHcCC-CeEEEEEecCCCCCCCceEEEE-CCCCCEEEEEeCCCccccccccccccccCCCccccc
Q 010874 224 HLY-RMDYMDFIQSHVDRDA-DITISCAAVGESRASDYGLVKI-DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300 (498)
Q Consensus 224 ~l~-~~dl~~ll~~h~~~~a-d~tv~~~~~~~~~~~~~g~v~~-d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~ 300 (498)
.+. ..---.++-.+.+.++ ++.-.+.+... ...-|++.. |..-.|+.+.|-+...... ..-+++.+
T Consensus 261 N~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~~-~~~~~g~l-------- 329 (482)
T PTZ00339 261 NILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILNN-DELLTGEL-------- 329 (482)
T ss_pred cccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhhc-ccccCCee--------
Confidence 974 3322456777777777 65544443322 133466543 4333678887765432210 00001111
Q ss_pred cCCcceeeeEEEEcHHHHHHHHH
Q 010874 301 KCPYVASMGVYVFKKDVLFKLLR 323 (498)
Q Consensus 301 ~~~~l~~~GIYif~~~vL~~ll~ 323 (498)
.....++..++|+.++|.++++
T Consensus 330 -~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 330 -AFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred -cccccceEEEEEEHHHHHHHhh
Confidence 1256788999999999987653
|
|
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.8e-08 Score=97.49 Aligned_cols=86 Identities=12% Similarity=0.316 Sum_probs=62.8
Q ss_pred CCCCCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEEc-----------ceEEeCCcc
Q 010874 384 KTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELK-----------DTVMLGADY 447 (498)
Q Consensus 384 ~~~i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i~-----------~svi~~~~~ 447 (498)
...+..++.+.|.+++.+ ++.||++|.|. +|.|. +.+||++|.|+++|.|. +++|+++
T Consensus 52 ~p~I~~~~~I~p~A~V~G----~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~-- 125 (269)
T PLN02296 52 APVVDKDAFVAPSASVIG----DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDN-- 125 (269)
T ss_pred CCccCCCCEECCCcEEEc----ceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCC--
Confidence 334555566666665543 67788888887 77765 34899999999999995 5667766
Q ss_pred ccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 448 YQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 448 ~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||++|.|.+|+|++++.||.+++|.+
T Consensus 126 -----------------v~IG~~avI~g~~Igd~v~IG~ga~I~~ 153 (269)
T PLN02296 126 -----------------VTIGHSAVLHGCTVEDEAFVGMGATLLD 153 (269)
T ss_pred -----------------CEECCCceecCCEECCCcEECCCcEECC
Confidence 7888888888888888887777777754
|
|
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.7e-08 Score=89.60 Aligned_cols=92 Identities=11% Similarity=0.165 Sum_probs=64.0
Q ss_pred CCCCCCCCCCccCCCeEec-Ceeee----ceEEcCCCEEC-ceEEec-----cEECCCCEECCCCEEcceEEeCCccccc
Q 010874 382 DPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTVEH-----SIVGERSRLDYGVELKDTVMLGADYYQT 450 (498)
Q Consensus 382 ~~~~~i~~~~~i~~~~~i~-~~~I~----~s~Ig~~~~I~-~~~v~~-----siIg~~~~Ig~~~~i~~svi~~~~~~~~ 450 (498)
++.+.+.....+++++.|. +++|. +++||++|.|+ +|.|.. ++||++|.|+.+|.|.+++++++
T Consensus 9 ~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~----- 83 (153)
T cd04645 9 APNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDN----- 83 (153)
T ss_pred CCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCC-----
Confidence 3343333344455555553 35554 46889999998 788875 59999999999999988888877
Q ss_pred hhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 451 ESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 451 ~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+.|+.++.+. +++|++++.|++++.+..
T Consensus 84 --------------~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~ 112 (153)
T cd04645 84 --------------CLIGMGAIILDGAVIGKGSIVAAGSLVPP 112 (153)
T ss_pred --------------CEECCCCEEcCCCEECCCCEECCCCEECC
Confidence 6777777775 667777777777766643
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-08 Score=108.50 Aligned_cols=86 Identities=20% Similarity=0.229 Sum_probs=64.5
Q ss_pred CeeeeceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeE
Q 010874 401 NCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCI 477 (498)
Q Consensus 401 ~~~I~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~i 477 (498)
++.|.+++||++|.|+ ++.|. +++||++|+||+++++.++.++.+..+...+.+ + + +.||+++.|+ +++
T Consensus 308 ~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~i~~~~~i----~-~---~~Ig~~~~ig~~~~ 379 (451)
T TIGR01173 308 YSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHLSYL----G-D---AEIGSNVNIGAGTI 379 (451)
T ss_pred ecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCCcEecceeeE----e-e---eEEcCCcEECCCeE
Confidence 3555678899999998 78886 799999999999999999999887555443322 1 1 6777777775 455
Q ss_pred ECC-------CCEECCCcEEeCCC
Q 010874 478 IDK-------NVKIGKDVVIVNKD 494 (498)
Q Consensus 478 I~~-------~~~Ig~~~~i~~~~ 494 (498)
+.. ++.||+++.|....
T Consensus 380 ~~~~~~~~~~~~~Igd~~~ig~~~ 403 (451)
T TIGR01173 380 TCNYDGANKHKTIIGDGVFIGSNT 403 (451)
T ss_pred EeCcccccCCCCEECCCcEECCCC
Confidence 543 58999999998754
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.5e-08 Score=85.44 Aligned_cols=84 Identities=14% Similarity=0.255 Sum_probs=56.4
Q ss_pred ceEEcCCCEEC-ceEE-eccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCC
Q 010874 406 DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNV 482 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~ 482 (498)
+++||++|.|+ ++.| .+++||++|.|++++.|.++.+.+...+.......+.++++ +.||+++.+. +++|++++
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~---~~Ig~~~~v~~~~~ig~~~ 92 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRG---ASIGANATILPGVTIGEYA 92 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCC---cEECcCCEEeCCcEECCCC
Confidence 67888888888 6777 47888888888888888776554432111111113344444 6777777774 48888888
Q ss_pred EECCCcEEeC
Q 010874 483 KIGKDVVIVN 492 (498)
Q Consensus 483 ~Ig~~~~i~~ 492 (498)
.|++++.+..
T Consensus 93 ~i~~~~~v~~ 102 (119)
T cd03358 93 LVGAGAVVTK 102 (119)
T ss_pred EEccCCEEeC
Confidence 8888888864
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.5e-08 Score=89.51 Aligned_cols=99 Identities=12% Similarity=0.233 Sum_probs=76.5
Q ss_pred ccCCCCCCCCCCccCCCeEec-Ceeee----ceEEcCCCEEC-ceEEe-----ccEECCCCEECCCCEEcceEEeCCccc
Q 010874 380 FYDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKDTVMLGADYY 448 (498)
Q Consensus 380 ~~~~~~~i~~~~~i~~~~~i~-~~~I~----~s~Ig~~~~I~-~~~v~-----~siIg~~~~Ig~~~~i~~svi~~~~~~ 448 (498)
|++|.+.+..++++++.+.|. ++.++ +-.||++|.|+ +|+|. .+.||++|+||++|.|.+|.|.++
T Consensus 19 ~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~--- 95 (176)
T COG0663 19 FVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDN--- 95 (176)
T ss_pred EECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCC---
Confidence 455555555555555555553 34442 57888888888 67663 579999999999999999999988
Q ss_pred cchhHHHHhhcCCcccEEeCCCcEEee-eEECCCCEECCCcEEeCCCCCC
Q 010874 449 QTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDESP 497 (498)
Q Consensus 449 ~~~~~~~s~l~~~~~~v~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~ 497 (498)
+.||-|+.|-| |.||++|.||+|+.+...+.+|
T Consensus 96 ----------------~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p 129 (176)
T COG0663 96 ----------------VLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIP 129 (176)
T ss_pred ----------------cEEecCceEeCCcEECCCcEEccCCcccCCcCCC
Confidence 89999998876 9999999999999998766543
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-08 Score=109.16 Aligned_cols=111 Identities=19% Similarity=0.253 Sum_probs=77.5
Q ss_pred CCCCCCCccCCCeEec-CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-HHhhcC
Q 010874 385 TPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLAE 460 (498)
Q Consensus 385 ~~i~~~~~i~~~~~i~-~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~s~l~~ 460 (498)
..+...+.+++++.|+ +|.|.+|+|+++|.|+ ++.|.+++||+++.|++++.|. ++++.++..+++++++ .+.+..
T Consensus 283 ~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~ 362 (481)
T PRK14358 283 VLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDA 362 (481)
T ss_pred cEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceecC
Confidence 3333344445555552 4777789999999999 8888899999999999999986 6777777777776654 222222
Q ss_pred Cc--------ccEEeCCCcEEe-eeEECC-------CCEECCCcEEeCCCC
Q 010874 461 GK--------VPIGVGRNTKIR-NCIIDK-------NVKIGKDVVIVNKDE 495 (498)
Q Consensus 461 ~~--------~~v~Ig~~~~i~-~~iI~~-------~~~Ig~~~~i~~~~~ 495 (498)
+. ..+.||++|.|+ +++|+. ++.||+++.|.....
T Consensus 363 ~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~ 413 (481)
T PRK14358 363 GVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTT 413 (481)
T ss_pred CcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCE
Confidence 21 127788888886 566653 579999999987653
|
|
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.8e-08 Score=83.64 Aligned_cols=90 Identities=9% Similarity=0.123 Sum_probs=69.2
Q ss_pred CCCCCCCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcC
Q 010874 382 DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAE 460 (498)
Q Consensus 382 ~~~~~i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~ 460 (498)
.+...+ ..+.+++++.|+++.|.+|+|+++|.|+ ++.|.+|+|+++++||++++|.++++.++
T Consensus 5 ~~~~~i-~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~--------------- 68 (104)
T cd04651 5 GRRGEV-KNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKN--------------- 68 (104)
T ss_pred cCCCEE-EeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCC---------------
Confidence 344444 3456788888888889999999999999 89999999999999999999999998887
Q ss_pred CcccEEeCCCcEEeeeEEC---CCCEECCCcEEe
Q 010874 461 GKVPIGVGRNTKIRNCIID---KNVKIGKDVVIV 491 (498)
Q Consensus 461 ~~~~v~Ig~~~~i~~~iI~---~~~~Ig~~~~i~ 491 (498)
+.||+++++.+..-. ++....++.++.
T Consensus 69 ----~~Ig~~~~v~~~~~~~~~~~~~~~~~~~~~ 98 (104)
T cd04651 69 ----VVIPDGVVIGGDPEEDRARFYVTEDGIVVV 98 (104)
T ss_pred ----CEECCCCEECCCcccccccceEcCCeEEEE
Confidence 889998888755211 234444444443
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.4e-08 Score=87.84 Aligned_cols=68 Identities=16% Similarity=0.305 Sum_probs=58.0
Q ss_pred ceEEcCCCEEC-ceEEecc----EECCCCEECCCCEEcc-----eEEeCCccccchhHHHHhhcCCcccEEeCCCcEEee
Q 010874 406 DAIISHGCFLR-ECTVEHS----IVGERSRLDYGVELKD-----TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~~s----iIg~~~~Ig~~~~i~~-----svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~ 475 (498)
++.||++|.|+ ++.|..+ +||++|.|+++|.|.. ++|+++ +.|++++.+.+
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~-------------------~~I~~~~~i~~ 78 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDY-------------------VTIGHNAVVHG 78 (154)
T ss_pred eEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCC-------------------CEECCCcEEEC
Confidence 68899999998 7888754 9999999999999986 677776 88999998888
Q ss_pred eEECCCCEECCCcEEeC
Q 010874 476 CIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~ 492 (498)
++|++++.||.++.+.+
T Consensus 79 ~~Ig~~~~Ig~~~~i~~ 95 (154)
T cd04650 79 AKVGNYVIVGMGAILLN 95 (154)
T ss_pred cEECCCCEEcCCCEEeC
Confidence 89998888888888754
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.3e-08 Score=93.50 Aligned_cols=57 Identities=12% Similarity=0.321 Sum_probs=39.8
Q ss_pred CCCCCCCCCCccCCCeEec-CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcc
Q 010874 382 DPKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKD 439 (498)
Q Consensus 382 ~~~~~i~~~~~i~~~~~i~-~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~ 439 (498)
++.+.+. .+.+++++.|+ +|.|.+++||++|+|+ ++.+.+++||++|.|++++.|..
T Consensus 12 ~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 12 HPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred CCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 3444442 34566666664 4777778888888888 77777888888888888887764
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.5e-08 Score=95.90 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=15.3
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
|.||.+|.|. +++|++++.||+|++|.
T Consensus 180 v~IGa~a~I~~GV~IG~gavIGaGavI~ 207 (269)
T TIGR00965 180 CFIGARSEIVEGVIVEEGSVISMGVFIG 207 (269)
T ss_pred CEECCCCEEcCCCEECCCCEEeCCCEEC
Confidence 5566555553 45556666666555553
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.6e-08 Score=96.01 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=19.0
Q ss_pred ceEEcCCCEEC-ceEEe-------------ccEECCCCEECCCCEEc
Q 010874 406 DAIISHGCFLR-ECTVE-------------HSIVGERSRLDYGVELK 438 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-------------~siIg~~~~Ig~~~~i~ 438 (498)
++.||++|.|+ ++.|. +++||++|.|+++|+|.
T Consensus 47 ~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~ 93 (254)
T cd03351 47 PTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIH 93 (254)
T ss_pred CeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEe
Confidence 35555555555 45553 45666666666666664
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.4e-08 Score=88.31 Aligned_cols=66 Identities=15% Similarity=0.242 Sum_probs=45.4
Q ss_pred eEEcCCCEEC-ceEEe-----ccEECCCCEECCCCEEcc-eEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEEC
Q 010874 407 AIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKD-TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~-----~siIg~~~~Ig~~~~i~~-svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~ 479 (498)
+.||++|.|+ ++.|. ++.||++|.|++++.|.+ +++.++ +.||.++.|.++.||
T Consensus 43 v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~-------------------~~Ig~~~~I~~~~Ig 103 (167)
T cd00710 43 IIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDN-------------------CFIGFRSVVFNAKVG 103 (167)
T ss_pred EEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCC-------------------CEECCCCEEECCEEC
Confidence 6777777777 66663 467777777777777765 555555 666767766667777
Q ss_pred CCCEECCCcEEe
Q 010874 480 KNVKIGKDVVIV 491 (498)
Q Consensus 480 ~~~~Ig~~~~i~ 491 (498)
+++.||.++.|.
T Consensus 104 ~~~~Ig~~s~i~ 115 (167)
T cd00710 104 DNCVIGHNAVVD 115 (167)
T ss_pred CCCEEcCCCEEe
Confidence 777777766664
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.9e-08 Score=96.23 Aligned_cols=56 Identities=16% Similarity=0.338 Sum_probs=27.4
Q ss_pred CCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEc
Q 010874 383 PKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK 438 (498)
Q Consensus 383 ~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~ 438 (498)
|.+.+.+++.+++++.|+ .|.|. ++.||++|.|+ +++|. +++||++|+|+++|.|.
T Consensus 7 p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig 66 (262)
T PRK05289 7 PTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIG 66 (262)
T ss_pred CCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceec
Confidence 333344444444444442 23332 45555555555 45453 45666666666666664
|
|
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=98.68 E-value=7e-08 Score=96.42 Aligned_cols=90 Identities=20% Similarity=0.309 Sum_probs=46.1
Q ss_pred ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeC--------------CccccchhHH--HHhhcCCc-ccEE
Q 010874 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLG--------------ADYYQTESEI--ASLLAEGK-VPIG 466 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~--------------~~~~~~~~~~--~s~l~~~~-~~v~ 466 (498)
++.||++|+|. +++|. ++.||++|.|++|++|....... ...+++++|+ ++.+..|. -.+.
T Consensus 147 ~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTv 226 (338)
T COG1044 147 NVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTV 226 (338)
T ss_pred CcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECCceEEcccceeccccccCce
Confidence 56666666666 56664 47777777777777775332211 1223333444 11121110 0034
Q ss_pred eCCCcEEee-eEECCCCEECCCcEEeCCCC
Q 010874 467 VGRNTKIRN-CIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 467 Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~ 495 (498)
||++++|.| +-|+.||+||++|.|.+.-|
T Consensus 227 Ig~~~kIdN~vqIaHnv~IG~~~~I~~~vg 256 (338)
T COG1044 227 IGEGVKIDNLVQIGHNVRIGEHCIIAGQVG 256 (338)
T ss_pred ecCCcEEcceeEEccccEECCCcEEeccce
Confidence 555555543 34666666666666665443
|
|
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-07 Score=90.73 Aligned_cols=61 Identities=8% Similarity=0.072 Sum_probs=48.5
Q ss_pred CCCeEec-CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHH
Q 010874 394 LPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI 454 (498)
Q Consensus 394 ~~~~~i~-~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~ 454 (498)
++++.|+ .+.|.++.||++|+|+ +|.|.+++||++|.|+++|.|.+++|++...+...+.+
T Consensus 6 ~~~~~I~~~a~i~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I 68 (204)
T TIGR03308 6 SPEPTLHPTAELTESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRI 68 (204)
T ss_pred CCCCeECCCcEEeccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEE
Confidence 3444553 4666678999999999 89999999999999999999998888877776666533
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=89.86 Aligned_cols=68 Identities=21% Similarity=0.444 Sum_probs=53.8
Q ss_pred ceEEcCCCEEC-ceEEec----cEECCCCEECCCCEEcc-----eEEeCCccccchhHHHHhhcCCcccEEeCCCcEEee
Q 010874 406 DAIISHGCFLR-ECTVEH----SIVGERSRLDYGVELKD-----TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~~----siIg~~~~Ig~~~~i~~-----svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~ 475 (498)
+++||++|.|+ +|+|.. .+||++|.||++|.|.. ++++++ +.||+++.+.+
T Consensus 28 ~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~-------------------~~Ig~~a~i~g 88 (196)
T PRK13627 28 DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGEN-------------------GHIGHGAILHG 88 (196)
T ss_pred ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCC-------------------CEECCCcEEee
Confidence 67888888888 777754 47899999999988854 455555 78888888888
Q ss_pred eEECCCCEECCCcEEeC
Q 010874 476 CIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~ 492 (498)
|+|++++.||.+++|.+
T Consensus 89 ~vIG~~v~IG~ga~V~~ 105 (196)
T PRK13627 89 CVIGRDALVGMNSVIMD 105 (196)
T ss_pred EEECCCCEECcCCccCC
Confidence 88888888888877754
|
|
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.3e-08 Score=94.71 Aligned_cols=83 Identities=16% Similarity=0.293 Sum_probs=58.4
Q ss_pred CCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEEc-----------ceEEeCCccccc
Q 010874 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELK-----------DTVMLGADYYQT 450 (498)
Q Consensus 387 i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i~-----------~svi~~~~~~~~ 450 (498)
+...+.+.|++.+.+ ++.||++|.|. +++|. ..+||++|.|+++|.|. +++|+++
T Consensus 62 i~~~~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~----- 132 (246)
T PLN02472 62 VAVDAYVAPNVVLAG----QVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRY----- 132 (246)
T ss_pred cCCCCEECCCCEEec----CEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCC-----
Confidence 344455555555433 56777777776 56554 25889999999999884 4667666
Q ss_pred hhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 451 ESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 451 ~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||++|.|.+|+|++++.||.+++|.+
T Consensus 133 --------------v~IG~~s~L~~~~Igd~v~IG~~svI~~ 160 (246)
T PLN02472 133 --------------VTIGAYSLLRSCTIEPECIIGQHSILME 160 (246)
T ss_pred --------------CEECCCcEECCeEEcCCCEECCCCEECC
Confidence 7888888888888888888888777654
|
|
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.2e-08 Score=98.86 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=19.9
Q ss_pred ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEc
Q 010874 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK 438 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~ 438 (498)
++.||++|.|+ +++|. +++||++|+|+++|+|.
T Consensus 139 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg 173 (324)
T TIGR01853 139 DVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIG 173 (324)
T ss_pred cceeCCCceECCCcEECCCCEECCCCEECCCcEEC
Confidence 45556666665 55554 56666666666666663
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-07 Score=84.56 Aligned_cols=97 Identities=14% Similarity=0.265 Sum_probs=53.7
Q ss_pred CCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEE-eccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCc
Q 010874 387 FYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK 462 (498)
Q Consensus 387 i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~ 462 (498)
+..++.+.+.++|. .+.|. ++.||++|.|+ ++.| .+++||++|.|++++.|.+.+- ....-...++++
T Consensus 10 i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~-------~~~~~~v~Ig~~- 81 (139)
T cd03350 10 IRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLE-------PLQATPVIIEDD- 81 (139)
T ss_pred ECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCccc-------ccccCCeEECCC-
Confidence 33344444444442 23332 45667777776 5655 3567777777777777754210 000001112222
Q ss_pred ccEEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 010874 463 VPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 463 ~~v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~~ 493 (498)
+.||+++.| .++.|++++.|++++.|.+.
T Consensus 82 --~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~ 111 (139)
T cd03350 82 --VFIGANCEVVEGVIVGKGAVLAAGVVLTQS 111 (139)
T ss_pred --CEECCCCEECCCCEECCCCEEcCCCEEcCC
Confidence 677777777 37778888888888877753
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=93.99 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=24.5
Q ss_pred ceEEcCCCEEC-ceEEe-------------ccEECCCCEECCCCEEcce
Q 010874 406 DAIISHGCFLR-ECTVE-------------HSIVGERSRLDYGVELKDT 440 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-------------~siIg~~~~Ig~~~~i~~s 440 (498)
+++||++|+|+ ++.|. +++||++|.|+++|.|..+
T Consensus 46 ~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~ 94 (254)
T TIGR01852 46 HTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRG 94 (254)
T ss_pred eEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCc
Confidence 57777777776 66664 4677778877777777643
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.3e-07 Score=85.44 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=64.3
Q ss_pred eEeecCCHHHHHHHHHHhhccC-CCccccCCCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEECCC
Q 010874 354 YWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGER 428 (498)
Q Consensus 354 ~w~dIgt~~dy~~An~~ll~~~-~~~~~~~~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~ 428 (498)
++.-+++++...+.-..+.+.. +...+..+...+...+.+++++.|. ++.|. ++.||++|+|+ ++.|. +++||++
T Consensus 59 ~iiai~~~~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~ 138 (197)
T cd03360 59 FVVAIGDNKLRRKLAEKLLAAGYRFATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDF 138 (197)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCccceEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCC
Confidence 4455666633333323332221 1112233333333344444444442 24333 45566666665 55553 4666666
Q ss_pred CEECCCCEEcc-eEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 429 SRLDYGVELKD-TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 429 ~~Ig~~~~i~~-svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
|.|+.++.|.+ +++.++ +.||.++.+. +++|++++.||+++++..
T Consensus 139 ~~i~~~~~i~~~~~ig~~-------------------~~ig~~~~v~~~~~ig~~~~v~~~~~v~~ 185 (197)
T cd03360 139 VHIAPGVVLSGGVTIGEG-------------------AFIGAGATIIQGVTIGAGAIIGAGAVVTK 185 (197)
T ss_pred CEECCCCEEcCCcEECCC-------------------CEECCCCEEcCCCEECCCCEECCCCEEcC
Confidence 66666666644 333333 7777777775 578888888888888765
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-07 Score=84.41 Aligned_cols=67 Identities=22% Similarity=0.431 Sum_probs=55.7
Q ss_pred ceEEcCCCEEC-ceEEec----cEECCCCEECCCCEEcce-----EEeCCccccchhHHHHhhcCCcccEEeCCCcEEee
Q 010874 406 DAIISHGCFLR-ECTVEH----SIVGERSRLDYGVELKDT-----VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~~----siIg~~~~Ig~~~~i~~s-----vi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~ 475 (498)
+++||++|.|+ +++|.. ++||++|.|+++|+|.++ +|+++ +.|+.++.+.+
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~-------------------~~I~~~~~i~~ 77 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN-------------------VTVGHGAVLHG 77 (153)
T ss_pred eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC-------------------cEECCCcEEee
Confidence 68888888888 777764 599999999999999884 77777 78888888888
Q ss_pred eEECCCCEECCCcEEe
Q 010874 476 CIIDKNVKIGKDVVIV 491 (498)
Q Consensus 476 ~iI~~~~~Ig~~~~i~ 491 (498)
++|++++.|++++.+.
T Consensus 78 ~~Ig~~~~Ig~~~~v~ 93 (153)
T cd04645 78 CTIGDNCLIGMGAIIL 93 (153)
T ss_pred eEECCCCEECCCCEEc
Confidence 8888888888777775
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.5e-08 Score=103.16 Aligned_cols=99 Identities=12% Similarity=0.192 Sum_probs=67.2
Q ss_pred CccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCCC----------EECCCCEEcceEEeCCccccchhHHH----
Q 010874 391 PRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERS----------RLDYGVELKDTVMLGADYYQTESEIA---- 455 (498)
Q Consensus 391 ~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~----------~Ig~~~~i~~svi~~~~~~~~~~~~~---- 455 (498)
+.|++++.|+++.|.+|+||++|.|+ ++.|++|+||++| +||+++.|.+|+|.++..++..+.+.
T Consensus 283 ~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~ 362 (430)
T PRK14359 283 SHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDG 362 (430)
T ss_pred eEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccC
Confidence 34455555555666678888888888 7777777777777 66777788888888887777765332
Q ss_pred -----HhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 456 -----SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 456 -----s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
..++++ +.||.++.|. ++.||+++.||+++++..
T Consensus 363 ~~~~~~~ig~~---~~ig~~~~i~~~~~ig~~~~i~~g~~v~~ 402 (430)
T PRK14359 363 KKKHKTIIGKN---VFIGSDTQLVAPVNIEDNVLIAAGSTVTK 402 (430)
T ss_pred ccCcCCEECCC---eEEcCCCEEeCCcEECCCCEECCCCEEcc
Confidence 234444 5555555554 577777777777777653
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.5e-08 Score=101.48 Aligned_cols=66 Identities=20% Similarity=0.364 Sum_probs=59.5
Q ss_pred CCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECC-------------------CCEECCCCEEcceEEeCCcccc
Q 010874 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGE-------------------RSRLDYGVELKDTVMLGADYYQ 449 (498)
Q Consensus 390 ~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~-------------------~~~Ig~~~~i~~svi~~~~~~~ 449 (498)
.+.|++++.|.++.|.+|+||++|+|+ +|.|++|+|+. ++.||++|.|.+|+++.+
T Consensus 308 ~~~ig~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~---- 383 (429)
T PRK02862 308 ESIIAEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKN---- 383 (429)
T ss_pred eCEECCCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCC----
Confidence 467888888877899999999999999 89999999976 799999999999999998
Q ss_pred chhHHHHhhcCCcccEEeCCCcEEe
Q 010874 450 TESEIASLLAEGKVPIGVGRNTKIR 474 (498)
Q Consensus 450 ~~~~~~s~l~~~~~~v~Ig~~~~i~ 474 (498)
+.||++++|.
T Consensus 384 ---------------~~i~~~~~~~ 393 (429)
T PRK02862 384 ---------------ARIGNNVRIV 393 (429)
T ss_pred ---------------cEECCCcEEe
Confidence 8888888885
|
|
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-07 Score=84.92 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=38.1
Q ss_pred CCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEEcceEEe
Q 010874 388 YTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVML 443 (498)
Q Consensus 388 ~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i~~svi~ 443 (498)
.+++.+.+.+.|.+ +++||++|+|+ ++.|. .++||++|.|+++|.|.+++.+
T Consensus 3 ~~~~~I~~~a~i~g----~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~ 59 (164)
T cd04646 3 APGAVVCQESEIRG----DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPK 59 (164)
T ss_pred CCCcEECCCCEEcC----ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCC
Confidence 34445555554433 68888899888 77774 3599999999999999887553
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=93.49 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=14.3
Q ss_pred eEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEc
Q 010874 407 AIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK 438 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~ 438 (498)
+.||++|.|+ +|.|. +++||++|.|++++.|.
T Consensus 29 v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~ 62 (254)
T TIGR01852 29 VKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIG 62 (254)
T ss_pred CEECCCCEECCCCEEeeeEEECCCCEECCCcEeC
Confidence 3444444444 33332 34455555555555543
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.1e-08 Score=100.95 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=61.1
Q ss_pred CCCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEe
Q 010874 389 TSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 467 (498)
Q Consensus 389 ~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~I 467 (498)
..+.+++++.|++++|.+|+||++|.|+ +|.|++|+|+++|+|+++|+|.+|+++++ +.|
T Consensus 314 ~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~-------------------~~i 374 (407)
T PRK00844 314 QDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKN-------------------VVV 374 (407)
T ss_pred EeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCC-------------------CEE
Confidence 3467788888888899999999999999 89999999999999999999999999988 788
Q ss_pred CCCcEEee
Q 010874 468 GRNTKIRN 475 (498)
Q Consensus 468 g~~~~i~~ 475 (498)
|++++|.+
T Consensus 375 ~~~~~i~~ 382 (407)
T PRK00844 375 PPGATIGV 382 (407)
T ss_pred CCCCEECC
Confidence 88887764
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-07 Score=86.62 Aligned_cols=84 Identities=20% Similarity=0.344 Sum_probs=52.4
Q ss_pred CccCCCeEec-Ceeee-ceEEcCCCEEC-ceEE-eccEECCCCEECCCCEEc-ceEEeCCccccchhHHHHhhcCCcccE
Q 010874 391 PRFLPPTKID-NCRIK-DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELK-DTVMLGADYYQTESEIASLLAEGKVPI 465 (498)
Q Consensus 391 ~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~~s~l~~~~~~v 465 (498)
+.+.+++.+. ++.|. +++|+++++|| +|.| .+++|+.+++||++|.|. ++++.++ +
T Consensus 91 ~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~-------------------~ 151 (197)
T cd03360 91 AVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGG-------------------V 151 (197)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCC-------------------c
Confidence 3444444442 34454 36666666666 5555 366666666666666663 3333333 7
Q ss_pred EeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 010874 466 GVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 466 ~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 493 (498)
.||++|+|+ +|+|.++++||+++.+...
T Consensus 152 ~ig~~~~ig~~~~v~~~~~ig~~~~v~~~ 180 (197)
T cd03360 152 TIGEGAFIGAGATIIQGVTIGAGAIIGAG 180 (197)
T ss_pred EECCCCEECCCCEEcCCCEECCCCEECCC
Confidence 888888885 7888888888888887654
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-07 Score=92.52 Aligned_cols=33 Identities=12% Similarity=0.374 Sum_probs=16.9
Q ss_pred ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEc
Q 010874 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK 438 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~ 438 (498)
++.||++|.|+ ++.|. ++.||++|+|++++.|.
T Consensus 29 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig 63 (255)
T PRK12461 29 NVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVG 63 (255)
T ss_pred CCEECCCcEEccCCEEeCCCEECCCCEEccCcEeC
Confidence 34555555555 44443 45555555555555553
|
|
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-07 Score=92.54 Aligned_cols=15 Identities=20% Similarity=0.204 Sum_probs=6.8
Q ss_pred cEECCCCEECCCCEE
Q 010874 423 SIVGERSRLDYGVEL 437 (498)
Q Consensus 423 siIg~~~~Ig~~~~i 437 (498)
++||++|.|++++.|
T Consensus 103 ~~IG~~~~I~~~~~I 117 (254)
T cd03351 103 TRIGNNNLLMAYVHV 117 (254)
T ss_pred eEECCCCEECCCCEE
Confidence 344444444444444
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.3e-08 Score=104.22 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=69.3
Q ss_pred ccCCCeEe-cCeeeeceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeC
Q 010874 392 RFLPPTKI-DNCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG 468 (498)
Q Consensus 392 ~i~~~~~i-~~~~I~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig 468 (498)
.+++++.| .++.|.+|+||++|+|+ ++.|. +++||++++||+++.|++++++++..+...+.+ |. +.||
T Consensus 302 ~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~------g~--~~ig 373 (456)
T PRK09451 302 VIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYL------GD--AEIG 373 (456)
T ss_pred EEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCCccCccccc------cc--cEEC
Confidence 33444444 24566688889999999 78886 899999999999999999999998766655443 21 5677
Q ss_pred CCcEEe-eeEECC-------CCEECCCcEEeCCC
Q 010874 469 RNTKIR-NCIIDK-------NVKIGKDVVIVNKD 494 (498)
Q Consensus 469 ~~~~i~-~~iI~~-------~~~Ig~~~~i~~~~ 494 (498)
++|.|+ ++++.. +++||+++.|....
T Consensus 374 ~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~ 407 (456)
T PRK09451 374 DNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDT 407 (456)
T ss_pred CCCEEcCCeEEecccCcccCCCEECCCcEECCCC
Confidence 777775 344432 58899999997654
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.4e-08 Score=98.04 Aligned_cols=88 Identities=10% Similarity=0.240 Sum_probs=43.3
Q ss_pred CccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHH--HHhhcCCcccE
Q 010874 391 PRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPI 465 (498)
Q Consensus 391 ~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~--~s~l~~~~~~v 465 (498)
+.+++.+.|+ ++.+. ++.||++|+|| +|.|++|.||+++.|-+.++|++|.+..+..+++++-+ .+.|+++ +
T Consensus 269 v~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~---~ 345 (460)
T COG1207 269 VEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGAD---V 345 (460)
T ss_pred EEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCC---C
Confidence 3344444443 23332 55666666666 55666666666666666566666666555444444433 3333333 3
Q ss_pred EeCCCcEEeeeEECCC
Q 010874 466 GVGRNTKIRNCIIDKN 481 (498)
Q Consensus 466 ~Ig~~~~i~~~iI~~~ 481 (498)
+||..+.++++.||++
T Consensus 346 hIGNFVEvK~a~ig~g 361 (460)
T COG1207 346 HIGNFVEVKKATIGKG 361 (460)
T ss_pred eEeeeEEEecccccCC
Confidence 4444444444444433
|
|
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-07 Score=96.30 Aligned_cols=68 Identities=12% Similarity=0.230 Sum_probs=61.4
Q ss_pred CCCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEe
Q 010874 389 TSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 467 (498)
Q Consensus 389 ~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~I 467 (498)
.++.+..++.|.+ +|.+|+|+.|++|+ +|+|++|+|+++|.||+||+|+++||..+ |.|
T Consensus 295 ~nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~-------------------v~I 354 (393)
T COG0448 295 SNSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKN-------------------VVI 354 (393)
T ss_pred eeeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCC-------------------cEe
Confidence 3456778888888 89999999999999 99999999999999999999999999998 899
Q ss_pred CCCcEEeee
Q 010874 468 GRNTKIRNC 476 (498)
Q Consensus 468 g~~~~i~~~ 476 (498)
++|++|++.
T Consensus 355 ~~g~~i~~~ 363 (393)
T COG0448 355 GEGVVIGGD 363 (393)
T ss_pred CCCcEEcCC
Confidence 999988754
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=101.49 Aligned_cols=94 Identities=15% Similarity=0.154 Sum_probs=66.7
Q ss_pred cCCCeEecCeeeeceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCC
Q 010874 393 FLPPTKIDNCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (498)
Q Consensus 393 i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~ 470 (498)
+++++.|..+.+.+|+|+++|.|+ ++.|. +++||++|+||+++++.+++++++......+.+. + +.||++
T Consensus 293 Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~-----~---~~Ig~~ 364 (448)
T PRK14357 293 IGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLG-----D---ATVGKN 364 (448)
T ss_pred ECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCCcCcccccccc-----C---cEECCC
Confidence 333344434455689999999999 78885 6999999999999999999998875443332221 1 567777
Q ss_pred cEEe-eeEE-------CCCCEECCCcEEeCCC
Q 010874 471 TKIR-NCII-------DKNVKIGKDVVIVNKD 494 (498)
Q Consensus 471 ~~i~-~~iI-------~~~~~Ig~~~~i~~~~ 494 (498)
+.|+ +|++ +..++||+++.|...-
T Consensus 365 ~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~ 396 (448)
T PRK14357 365 VNIGAGTITCNYDGKKKNPTFIEDGAFIGSNS 396 (448)
T ss_pred cEECCCcccccccccccCCcEECCCCEECCCC
Confidence 7775 3433 2468999999998653
|
|
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-07 Score=96.49 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=18.7
Q ss_pred ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEc
Q 010874 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK 438 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~ 438 (498)
++.||++|.|+ +++|. ++.||++|+|+++|+|.
T Consensus 148 ~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig 182 (343)
T PRK00892 148 GVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIG 182 (343)
T ss_pred CcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEe
Confidence 35555555555 45554 34466666666666663
|
|
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.9e-07 Score=90.94 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=17.4
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||.++.| .+++||+++.||+++.|..
T Consensus 183 v~IGa~s~I~~Gv~IGdgavIgag~vV~~ 211 (272)
T PRK11830 183 CFIGARSEVVEGVIVEEGSVLGMGVFLGQ 211 (272)
T ss_pred CEECCCCEEcCCCEECCCCEEcCCCEEcC
Confidence 566666666 3566666666666666643
|
|
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.7e-07 Score=82.55 Aligned_cols=67 Identities=22% Similarity=0.381 Sum_probs=46.7
Q ss_pred ceEEcCCCEEC-ceEEec-------------cEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCc
Q 010874 406 DAIISHGCFLR-ECTVEH-------------SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~~-------------siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~ 471 (498)
++.||++|.|+ +|.|.. ++||+++.|++++.|.++++.++ +.||+++
T Consensus 42 ~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~-------------------v~Ig~~~ 102 (161)
T cd03359 42 TVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSY-------------------VHIGKNC 102 (161)
T ss_pred ceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCC-------------------cEECCCC
Confidence 35777777777 666653 47999999999999998888877 6666666
Q ss_pred EEe-eeEECCCCEECCCcEEe
Q 010874 472 KIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 472 ~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
+|. +|+|++++.|++++.+.
T Consensus 103 ~Ig~~~~I~~~~~i~~g~~V~ 123 (161)
T cd03359 103 VIGRRCIIKDCVKILDGTVVP 123 (161)
T ss_pred EEcCCCEECCCcEECCCCEEC
Confidence 663 45555555555555443
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.1e-07 Score=99.59 Aligned_cols=95 Identities=20% Similarity=0.239 Sum_probs=68.1
Q ss_pred cCCCeEecCeeeeceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCC
Q 010874 393 FLPPTKIDNCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (498)
Q Consensus 393 i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~ 470 (498)
+..++.|.++.+.+++||++|.|+ ++.|. +++||++|+|+.+++|.+++++++..+.....+ |. +.||++
T Consensus 303 ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~------~~--~~ig~~ 374 (458)
T PRK14354 303 IGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYI------GD--AEVGEN 374 (458)
T ss_pred ECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeee------cC--cccCCc
Confidence 344444444556689999999999 88887 899999999999999999999887665544322 11 455666
Q ss_pred cEEe-eeEEC-------CCCEECCCcEEeCCCC
Q 010874 471 TKIR-NCIID-------KNVKIGKDVVIVNKDE 495 (498)
Q Consensus 471 ~~i~-~~iI~-------~~~~Ig~~~~i~~~~~ 495 (498)
+.|. ++++. -.++||+++.+.....
T Consensus 375 ~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~ 407 (458)
T PRK14354 375 VNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSN 407 (458)
T ss_pred eEEcCceeecccccccccCCEECCCcEEccCCE
Confidence 6554 33332 2588999999877653
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.6e-07 Score=96.47 Aligned_cols=55 Identities=5% Similarity=0.194 Sum_probs=48.9
Q ss_pred CccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECC----------------C---CEECCCCEEcceEEeCC
Q 010874 391 PRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGE----------------R---SRLDYGVELKDTVMLGA 445 (498)
Q Consensus 391 ~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~----------------~---~~Ig~~~~i~~svi~~~ 445 (498)
+.+.+++.|+++.|++|+|+++|.|+ +|.|.+|+|+. + ++||++|.|++++|.++
T Consensus 316 s~I~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~ 390 (436)
T PLN02241 316 SIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKN 390 (436)
T ss_pred eEEcCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCC
Confidence 66888888888889999999999999 89999998855 3 38999999999999988
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.2e-07 Score=97.38 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=60.8
Q ss_pred CCCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEe
Q 010874 389 TSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 467 (498)
Q Consensus 389 ~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~I 467 (498)
..+.|++++.|.++.|++|+|+++|.|+ +|+|++|+|+++|+||++|+|++|+++++ +.|
T Consensus 326 ~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~-------------------~~i 386 (425)
T PRK00725 326 INSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRG-------------------CVI 386 (425)
T ss_pred EeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCC-------------------CEE
Confidence 3567889999988999999999999999 89999999999999999999999999988 788
Q ss_pred CCCcEEe
Q 010874 468 GRNTKIR 474 (498)
Q Consensus 468 g~~~~i~ 474 (498)
+++++|+
T Consensus 387 ~~~~~i~ 393 (425)
T PRK00725 387 PEGMVIG 393 (425)
T ss_pred CCCCEEC
Confidence 8877765
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.7e-07 Score=70.77 Aligned_cols=36 Identities=11% Similarity=0.315 Sum_probs=28.0
Q ss_pred eEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEE
Q 010874 407 AIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVM 442 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi 442 (498)
+.||++|.|+ ++.|. +++||++|.|+++|.|.++..
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~ 38 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATG 38 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccC
Confidence 4577777777 67676 489999999999999987643
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.5e-07 Score=93.97 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=46.4
Q ss_pred CCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCC
Q 010874 389 TSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (498)
Q Consensus 389 ~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~ 445 (498)
..+.+++++.|+ ++.|. +++||+||.|+ ++.|++|+|+++|+|+++++|.+|+++.+
T Consensus 260 gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~ 319 (358)
T COG1208 260 GPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGEN 319 (358)
T ss_pred CCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCC
Confidence 344445555553 34454 59999999999 78999999999999999999999999999
|
|
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.4e-07 Score=88.21 Aligned_cols=88 Identities=18% Similarity=0.287 Sum_probs=58.7
Q ss_pred ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEc-ceEEeCCccccchhHHHHhhcCC-cccEEeCCCcEEe-eeEECC
Q 010874 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK-DTVMLGADYYQTESEIASLLAEG-KVPIGVGRNTKIR-NCIIDK 480 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~~s~l~~~-~~~v~Ig~~~~i~-~~iI~~ 480 (498)
+++||++|.|+ ++.|. +++||++|.|++++.|. +++|+++.+++..+.+...+..+ ..++.||+++.|+ +|+|.+
T Consensus 98 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~ 177 (231)
T TIGR03532 98 QVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILE 177 (231)
T ss_pred CeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcC
Confidence 67888888887 67664 68888888888888885 77777776665554442211110 1126677777775 667777
Q ss_pred CCEECCCcEEeCC
Q 010874 481 NVKIGKDVVIVNK 493 (498)
Q Consensus 481 ~~~Ig~~~~i~~~ 493 (498)
+++||+++.|...
T Consensus 178 g~~Ig~~~~Igag 190 (231)
T TIGR03532 178 GVRVGKGAVVAAG 190 (231)
T ss_pred CCEECCCCEECCC
Confidence 7777777777643
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.1e-07 Score=97.43 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=42.4
Q ss_pred CCCCCccCCCeEe-cCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEc-ceEEeCCccccc
Q 010874 387 FYTSPRFLPPTKI-DNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQT 450 (498)
Q Consensus 387 i~~~~~i~~~~~i-~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~ 450 (498)
+...+.|++++.| .++.|.+++||++|+|+ ++.+.+|+||++|.||+++.|. ++++.++..++.
T Consensus 283 I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~ 349 (459)
T PRK14355 283 ISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGN 349 (459)
T ss_pred EeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECC
Confidence 3334444555555 34667788899999998 7888888888888888777774 344444443333
|
|
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.1e-07 Score=88.20 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=14.3
Q ss_pred eEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEc
Q 010874 407 AIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK 438 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~ 438 (498)
++||++|.|+ ++.|. +++||++|+|+.++.|.
T Consensus 133 a~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~ 166 (272)
T PRK11830 133 AYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIG 166 (272)
T ss_pred CEECCCcEEccccEECCCCEECCCcEECCCccCC
Confidence 3444444444 33332 23455555555544443
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.2e-07 Score=84.96 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=28.7
Q ss_pred CCCCCCCccCCCeEec-Ceee-eceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEE
Q 010874 385 TPFYTSPRFLPPTKID-NCRI-KDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL 437 (498)
Q Consensus 385 ~~i~~~~~i~~~~~i~-~~~I-~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i 437 (498)
..+...+.++++++|. ++.| .++.||++|.|+ ++.|. +++||++|.|++++.|
T Consensus 14 ~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 14 AVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 3333444444444442 2444 256666666666 55554 3666666666666666
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.4e-07 Score=88.00 Aligned_cols=34 Identities=9% Similarity=0.169 Sum_probs=19.6
Q ss_pred ceEEcCCCEEC-ceEEe-------------ccEECCCCEECCCCEEcc
Q 010874 406 DAIISHGCFLR-ECTVE-------------HSIVGERSRLDYGVELKD 439 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-------------~siIg~~~~Ig~~~~i~~ 439 (498)
+++||++|.|+ ++.|. .++||++|.|+++|.|..
T Consensus 50 ~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~ 97 (262)
T PRK05289 50 HTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINR 97 (262)
T ss_pred ccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEec
Confidence 45556666665 45553 356666666666666654
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.3e-07 Score=87.91 Aligned_cols=101 Identities=17% Similarity=0.281 Sum_probs=73.6
Q ss_pred ccCCCCCCCCCCccCCCeEec-------CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccch
Q 010874 380 FYDPKTPFYTSPRFLPPTKID-------NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTE 451 (498)
Q Consensus 380 ~~~~~~~i~~~~~i~~~~~i~-------~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~ 451 (498)
+++|++.+++.+.|+|++.|+ ++++++|+|-++|.|. +++|.||+||.+|.||.+++++..-+....+...-
T Consensus 290 yIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~ 369 (407)
T KOG1460|consen 290 YIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFA 369 (407)
T ss_pred EEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcc
Confidence 567777777777777776663 4777899999999999 89999999999999999999998755443211110
Q ss_pred hHHHHhhcCCcccEEeCCCcEEeeeEECCCCEEC
Q 010874 452 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (498)
Q Consensus 452 ~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig 485 (498)
.-+++++. |.+++-+.+.+|++-++-.+.
T Consensus 370 --a~Tilga~---v~v~dev~v~~s~vlp~k~l~ 398 (407)
T KOG1460|consen 370 --ALTILGAD---VSVEDEVIVLNSIVLPNKELN 398 (407)
T ss_pred --eeEEeccc---ceecceeEEeeeeEecCCccc
Confidence 12234444 777887888888887776553
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.3e-07 Score=96.24 Aligned_cols=66 Identities=24% Similarity=0.408 Sum_probs=42.9
Q ss_pred ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCE
Q 010874 406 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 483 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~ 483 (498)
+++||++|.|+ ++.|.+|+||++|+|+ ++.+.+++++++ +.||++++|+ +|+|+++++
T Consensus 280 ~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~-------------------~~I~~~~~I~~~~~Ig~~~~ 339 (450)
T PRK14360 280 NTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDG-------------------VKIGPYAHLRPEAQIGSNCR 339 (450)
T ss_pred CcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCC-------------------cEECCCCEECCCCEEeCceE
Confidence 46677777776 6666777777777774 455666666666 6666666665 466666666
Q ss_pred ECCCcEEe
Q 010874 484 IGKDVVIV 491 (498)
Q Consensus 484 Ig~~~~i~ 491 (498)
||+++.|.
T Consensus 340 Ig~~~~i~ 347 (450)
T PRK14360 340 IGNFVEIK 347 (450)
T ss_pred ECCCEEEe
Confidence 66666554
|
|
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.6e-06 Score=76.14 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=10.5
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEE
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVI 490 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i 490 (498)
+.||+++.|. +++|..+++||+++.|
T Consensus 76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~I 102 (139)
T cd03350 76 VIIEDDVFIGANCEVVEGVIVGKGAVL 102 (139)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEE
Confidence 3344444442 3444444444444443
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.7e-07 Score=95.19 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=25.7
Q ss_pred eeceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCc
Q 010874 404 IKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGAD 446 (498)
Q Consensus 404 I~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~ 446 (498)
+.+++|+++|.|+ ++.+. +++||++++||.++.+++++++++.
T Consensus 320 ~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~ 364 (482)
T PRK14352 320 GSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGT 364 (482)
T ss_pred eecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCc
Confidence 3456666777666 56554 5666666666666555555555443
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.1e-07 Score=89.27 Aligned_cols=79 Identities=25% Similarity=0.427 Sum_probs=43.7
Q ss_pred eEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEE-eeeEECCCCEE
Q 010874 407 AIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKI 484 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i-~~~iI~~~~~I 484 (498)
+.||+|++|+ ++ ..+||.+|+||++|.|...+..++.... .......++++ |.||.||+| +++.||+++.|
T Consensus 148 a~IG~g~~I~h~~---givIG~~a~IGdnv~I~~~VtiGg~~~~-~~~~~p~IGd~---V~IGaga~Ilggv~IG~~a~I 220 (273)
T PRK11132 148 AKIGRGIMLDHAT---GIVIGETAVIENDVSILQSVTLGGTGKT-SGDRHPKIREG---VMIGAGAKILGNIEVGRGAKI 220 (273)
T ss_pred ceECCCeEEcCCC---CeEECCCCEECCCCEEcCCcEEecCccc-CCCcCCEECCC---cEEcCCCEEcCCCEECCCCEE
Confidence 4555555555 21 2355555555555555443333321000 00112344555 788888777 47889999999
Q ss_pred CCCcEEeC
Q 010874 485 GKDVVIVN 492 (498)
Q Consensus 485 g~~~~i~~ 492 (498)
|+|+++..
T Consensus 221 GAgSvV~~ 228 (273)
T PRK11132 221 GAGSVVLQ 228 (273)
T ss_pred CCCCEECc
Confidence 99988874
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.9e-06 Score=78.39 Aligned_cols=71 Identities=11% Similarity=0.176 Sum_probs=62.5
Q ss_pred ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCE
Q 010874 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK 483 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~ 483 (498)
++.||++|.|+ ++.|. +++||++|.||.+|.|.++.|.++ +.||.++.|.++.|++++.
T Consensus 64 ~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~-------------------~~Ig~~s~i~~~~i~~~~~ 124 (167)
T cd00710 64 SVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDN-------------------CVIGHNAVVDGVEIPPGRY 124 (167)
T ss_pred CEEECCCceECCCCEEeCCEEECCCCEECCCCEEECCEECCC-------------------CEEcCCCEEeCCEeCCCCE
Confidence 57788899998 77786 499999999999999999888887 8999999999999999999
Q ss_pred ECCCcEEeCCCC
Q 010874 484 IGKDVVIVNKDE 495 (498)
Q Consensus 484 Ig~~~~i~~~~~ 495 (498)
|++++.+.+...
T Consensus 125 v~~~~~v~~~~~ 136 (167)
T cd00710 125 VPAGAVITSQTQ 136 (167)
T ss_pred ECCCCEEcCCCc
Confidence 999999886553
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-06 Score=91.10 Aligned_cols=68 Identities=13% Similarity=0.231 Sum_probs=60.2
Q ss_pred CCCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEe
Q 010874 389 TSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 467 (498)
Q Consensus 389 ~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~I 467 (498)
..+.+++++.|++++|.+|+||++|+|+ +|.|.+|+|++++.||++|+|.+|+++++ +.|
T Consensus 293 ~~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~-------------------~~i 353 (361)
T TIGR02091 293 VDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKN-------------------VRI 353 (361)
T ss_pred ECCEECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCC-------------------CEE
Confidence 4467888888877788899999999999 89999999999999999999999999887 888
Q ss_pred CCCcEEee
Q 010874 468 GRNTKIRN 475 (498)
Q Consensus 468 g~~~~i~~ 475 (498)
++++.|+|
T Consensus 354 ~~~~~i~~ 361 (361)
T TIGR02091 354 GEGVVIGN 361 (361)
T ss_pred CCCCEeCC
Confidence 88887754
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-06 Score=83.56 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=15.8
Q ss_pred eEEcCCCEEC-ceEEe-ccEECCCCEECCCCEE
Q 010874 407 AIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL 437 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i 437 (498)
++||+||.|. +++|. +++||++|+|+.++.|
T Consensus 130 a~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~I 162 (269)
T TIGR00965 130 AYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGI 162 (269)
T ss_pred cEECCCCEECCCcEECCCCEECCCCEEcCCccc
Confidence 4555555555 44442 3555555555555544
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.2e-06 Score=79.57 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=6.1
Q ss_pred cEECCCCEECCCCEE
Q 010874 423 SIVGERSRLDYGVEL 437 (498)
Q Consensus 423 siIg~~~~Ig~~~~i 437 (498)
++||++|.||.++.|
T Consensus 154 ~~ig~~~~ig~~~~v 168 (201)
T TIGR03570 154 VVIGEGVFIGAGATI 168 (201)
T ss_pred cEECCCCEECCCCEE
Confidence 344444444444333
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.9e-06 Score=80.67 Aligned_cols=112 Identities=19% Similarity=0.282 Sum_probs=52.1
Q ss_pred CCCCCCCCCCccCCCeEecC-eeee-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcc-------------eEEeC
Q 010874 382 DPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD-------------TVMLG 444 (498)
Q Consensus 382 ~~~~~i~~~~~i~~~~~i~~-~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~-------------svi~~ 444 (498)
+|.+-|.+++.++++++|+. |.|+ ++.||+|++|+ .++|+ ++.||.+++|-+++.|.+ -+|.+
T Consensus 7 HPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~ 86 (260)
T COG1043 7 HPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGD 86 (260)
T ss_pred CcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECC
Confidence 33333344444444444433 3333 46666666666 45554 567777666666665542 12222
Q ss_pred CccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 010874 445 ADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 445 ~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 493 (498)
+..+-+++.+..--.+|.--+.||++..+- ++-|..+|+||.+|++.|.
T Consensus 87 ~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNn 136 (260)
T COG1043 87 NNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANN 136 (260)
T ss_pred CCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecC
Confidence 222222222211122221115677665552 4555555555555555553
|
|
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.30 E-value=3e-06 Score=73.17 Aligned_cols=15 Identities=7% Similarity=0.167 Sum_probs=7.6
Q ss_pred cEECCCCEECCCCEE
Q 010874 423 SIVGERSRLDYGVEL 437 (498)
Q Consensus 423 siIg~~~~Ig~~~~i 437 (498)
++||++|.||+++.|
T Consensus 68 ~~Ig~~~~Ig~~~~v 82 (119)
T cd03358 68 TTVKRGASIGANATI 82 (119)
T ss_pred cEECCCcEECcCCEE
Confidence 445555555555444
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.6e-06 Score=75.05 Aligned_cols=89 Identities=19% Similarity=0.377 Sum_probs=57.0
Q ss_pred CccCCCeEecC--eeeeceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcc
Q 010874 391 PRFLPPTKIDN--CRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV 463 (498)
Q Consensus 391 ~~i~~~~~i~~--~~I~~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~ 463 (498)
+.|.+.++|.+ ..|++..||+++.|. +++++ .-.||++|.|.+||+|.-.-= ....+++.
T Consensus 12 P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~-----------~p~~IG~~-- 78 (176)
T COG0663 12 PKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPG-----------YPVTIGDD-- 78 (176)
T ss_pred CCCCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCC-----------CCeEECCC--
Confidence 34444455522 233467777777777 56553 456777777777777753100 11122223
Q ss_pred cEEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 010874 464 PIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 464 ~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~ 493 (498)
|.||+++.|..|.|++++-||-|++|.|.
T Consensus 79 -vtIGH~aivHGc~Ig~~~lIGmgA~vldg 107 (176)
T COG0663 79 -VTIGHGAVVHGCTIGDNVLIGMGATVLDG 107 (176)
T ss_pred -cEEcCccEEEEeEECCCcEEecCceEeCC
Confidence 88999999999999999999999888873
|
|
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.9e-06 Score=82.68 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=56.6
Q ss_pred CCCCCCccCCCeEec-Ceeee-ceEEcCCCE-ECceEE-----eccEECCCCEECCCCEEcceEEeCCccccchhHHHHh
Q 010874 386 PFYTSPRFLPPTKID-NCRIK-DAIISHGCF-LRECTV-----EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASL 457 (498)
Q Consensus 386 ~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~-I~~~~v-----~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~ 457 (498)
.|...+++.++++|. ++.|. .++|+.++. +|.+.| ..++||.+|.||.+|.| .+++-++. .. ...
T Consensus 180 rI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasI-g~tLsGg~-----~~-~V~ 252 (341)
T TIGR03536 180 RIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCST-MGTLSGGG-----NI-VIS 252 (341)
T ss_pred EEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEE-eEEEeCCC-----ce-eEE
Confidence 344444555555553 34443 366666666 553334 36788999999999988 44443331 00 022
Q ss_pred hcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCC
Q 010874 458 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494 (498)
Q Consensus 458 l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~ 494 (498)
++++ +.||.|+.| +..||++|.||+|+.|...-
T Consensus 253 IGe~---~lIGagA~I-GI~IGd~~iIGAGavVtagT 285 (341)
T TIGR03536 253 VGEG---CLLGANAGI-GIPLGDRCTVEAGLYITAGT 285 (341)
T ss_pred ECCC---cEECCCCEE-eeEECCCCEECCCCEEeCCc
Confidence 3333 455555555 67788888888888776543
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.9e-06 Score=77.46 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=32.0
Q ss_pred CCCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEe---ccEECCCCEECCCCEEc
Q 010874 386 PFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELK 438 (498)
Q Consensus 386 ~i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~---~siIg~~~~Ig~~~~i~ 438 (498)
.+..++.|.+++.|..- .+..||++|.|+ ++.|. ..+||++|.|+.+|.|.
T Consensus 53 ~iG~~~~I~~~a~i~~~--~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~ 107 (182)
T PRK10502 53 KIGKGVVIRPSVRITYP--WKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLC 107 (182)
T ss_pred ccCCCcEEcCCEEEecC--CeEEECCCeEECCCceecccCceEECCCcEECCCeEEE
Confidence 34445555555555210 146677777777 56654 57888888888888774
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.4e-06 Score=90.54 Aligned_cols=73 Identities=15% Similarity=0.318 Sum_probs=61.5
Q ss_pred CCCCCCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCC
Q 010874 383 PKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG 461 (498)
Q Consensus 383 ~~~~i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~ 461 (498)
+...+ ..+.|++++.|+ +.|.+|+|+++|.|+ +|.|++|+|+++|.|+++++|.+|+++.+
T Consensus 283 ~~~~i-~~~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~---------------- 344 (369)
T TIGR02092 283 ENSKV-ENSLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKD---------------- 344 (369)
T ss_pred CCCEE-EEeEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCC----------------
Confidence 33433 455677777775 467899999999999 99999999999999999999999999988
Q ss_pred cccEEeCCCcEEeee
Q 010874 462 KVPIGVGRNTKIRNC 476 (498)
Q Consensus 462 ~~~v~Ig~~~~i~~~ 476 (498)
+.||+++++++.
T Consensus 345 ---~~v~~~~~~~~~ 356 (369)
T TIGR02092 345 ---VVIEPNVKIAGT 356 (369)
T ss_pred ---CEECCCCEeCCC
Confidence 899998888754
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.2e-06 Score=83.42 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=9.9
Q ss_pred cEECCCCEECCCCEEc
Q 010874 423 SIVGERSRLDYGVELK 438 (498)
Q Consensus 423 siIg~~~~Ig~~~~i~ 438 (498)
.+||++|+|+++|.|.
T Consensus 78 v~IG~~~~I~e~vtI~ 93 (255)
T PRK12461 78 LEIGDRNVIREGVTIH 93 (255)
T ss_pred eEECCceEECCccEEe
Confidence 4566666666666664
|
|
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.9e-06 Score=75.40 Aligned_cols=81 Identities=15% Similarity=0.218 Sum_probs=48.9
Q ss_pred ceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECC
Q 010874 406 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~ 480 (498)
+..||++|.|+ +|.|. ++.||++|.|+++|.|.++....+.. .......++++ +.|++++.+.+++|++
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~---~~~~~v~Ig~~---~~Ig~~~~i~~~~Ig~ 94 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKG---VAFFPLHIGDY---VFIGENCVVNAAQIGS 94 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCC---ccccCeEECCc---cEECCCCEEEeeEEcC
Confidence 34555555555 45444 36899999999999998764222110 00001123333 6778888777777777
Q ss_pred CCEECCCcEEeC
Q 010874 481 NVKIGKDVVIVN 492 (498)
Q Consensus 481 ~~~Ig~~~~i~~ 492 (498)
++.||++++|..
T Consensus 95 ~v~Ig~~~~Ig~ 106 (161)
T cd03359 95 YVHIGKNCVIGR 106 (161)
T ss_pred CcEECCCCEEcC
Confidence 777777766644
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.9e-06 Score=84.14 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=22.2
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||.|++| .++.||++++||+|++|..
T Consensus 219 V~IGagA~Ilggi~IGd~a~IGAgSVV~k 247 (294)
T PLN02694 219 VLIGAGATILGNVKIGEGAKIGAGSVVLI 247 (294)
T ss_pred eEECCeeEECCCCEECCCCEECCCCEECC
Confidence 778877777 6788888888888888764
|
|
| >cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00011 Score=73.99 Aligned_cols=214 Identities=13% Similarity=0.177 Sum_probs=127.9
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHh----cCC-CeEEEEeccC-chhHHHHHHhhc-cC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN----SGI-NKIFVLTQFN-SASLNRHIARTY-FG 165 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~----sGi-~~I~Vv~~~~-~~~l~~hl~~~~-~~ 165 (498)
+++.+|+||||.||||. ...||.|+||.....++++.++++.. .|. =..+|.+++. .+...+++.+ | +.
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~-~~~~ 77 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKK-YAGV 77 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHH-cCCC
Confidence 46789999999999996 57899999996443899999999864 233 2567777755 4567788864 3 21
Q ss_pred CC-C-cCCCCeEEEecc------cCCCCCCCCcc-ccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCceeeecCHHHHH
Q 010874 166 NG-T-NFGDGFVEVLAA------TQTPGESGKNW-FQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLYRMDYMDFI 234 (498)
Q Consensus 166 ~~-~-~~~~~~V~v~~~------~q~~~~~~~~~-~~Gta~Alr~~~~--~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll 234 (498)
.. . .|..+.+-.+.. .+..+.....| +.|.|+....... .+++......+++.+.+.|.+...-=-.++
T Consensus 78 ~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~l 157 (300)
T cd00897 78 NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRIL 157 (300)
T ss_pred ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHH
Confidence 10 0 011111110000 00000011112 4677776655432 344444557799999999997643224578
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCceEEE-ECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEE
Q 010874 235 QSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVF 313 (498)
Q Consensus 235 ~~h~~~~ad~tv~~~~~~~~~~~~~g~v~-~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif 313 (498)
-.|.++++++++=+.+-..+. ..-|.+. .|..-+|+++.|-|...... .+ + .....+.+++.+.|
T Consensus 158 g~~~~~~~~~~~evv~Kt~~d-ek~G~l~~~~g~~~vvEyse~p~e~~~~-~~-~-----------~~~~~~~nt~n~~~ 223 (300)
T cd00897 158 NHMVDNKAEYIMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVDE-FK-S-----------IKKFKIFNTNNLWV 223 (300)
T ss_pred HHHHhcCCceEEEEeecCCCC-CcccEEEEECCEEEEEEeccCCHHHHHh-hc-C-----------cccceEEEEeEEEE
Confidence 888999999887665544322 2345443 44333577777766543210 00 0 01235789999999
Q ss_pred cHHHHHHHHHh
Q 010874 314 KKDVLFKLLRW 324 (498)
Q Consensus 314 ~~~vL~~ll~~ 324 (498)
+-+.|.++++.
T Consensus 224 ~l~~L~~~~~~ 234 (300)
T cd00897 224 NLKAVKRVVEE 234 (300)
T ss_pred EHHHHHHHHHh
Confidence 99999887653
|
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. |
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.8e-06 Score=82.30 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=54.6
Q ss_pred CCCCCCCccCCCeEecC-eeee-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcC
Q 010874 385 TPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAE 460 (498)
Q Consensus 385 ~~i~~~~~i~~~~~i~~-~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~ 460 (498)
+.+..++.+.+++.+.. +.|. ++.++.+|.|+ .+++. ..+||.||+||.|+.|.+. +-+.
T Consensus 115 a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GV-Lep~--------------- 178 (271)
T COG2171 115 AIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGV-LEPL--------------- 178 (271)
T ss_pred cEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEE-ecCC---------------
Confidence 33444444444444422 3333 57777777776 55553 4688888888888887773 3221
Q ss_pred CcccEEeCCCcEEe-------eeEECCCCEECCCcEEeC
Q 010874 461 GKVPIGVGRNTKIR-------NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 461 ~~~~v~Ig~~~~i~-------~~iI~~~~~Ig~~~~i~~ 492 (498)
+..|+.||+||.|+ .+++|++|.|++|+.|..
T Consensus 179 ~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~ 217 (271)
T COG2171 179 QANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQ 217 (271)
T ss_pred CCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeC
Confidence 24456777776665 456666666666666654
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.3e-06 Score=87.31 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=59.4
Q ss_pred cCCCCCCCCCCccCCCeEec-Ceeeec------eEEcCCCEECceEEeccEECCCCEECCC-CEEcceEEeCCccccchh
Q 010874 381 YDPKTPFYTSPRFLPPTKID-NCRIKD------AIISHGCFLRECTVEHSIVGERSRLDYG-VELKDTVMLGADYYQTES 452 (498)
Q Consensus 381 ~~~~~~i~~~~~i~~~~~i~-~~~I~~------s~Ig~~~~I~~~~v~~siIg~~~~Ig~~-~~i~~svi~~~~~~~~~~ 452 (498)
+.+.+.+ ..+.+.+|++|+ +|.|.+ |+||++|+|+++.|.+|+|+++++|+.+ +++.++++.++
T Consensus 257 i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~------- 328 (353)
T TIGR01208 257 VGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQARIVDSVIGKK------- 328 (353)
T ss_pred ECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCCcceeecCEEcCC-------
Confidence 4445555 455555666663 466554 5555555555555678999999999888 48899988877
Q ss_pred HHHHhhcCCcccEEeCCCcEEe---eeEECCCCEEC
Q 010874 453 EIASLLAEGKVPIGVGRNTKIR---NCIIDKNVKIG 485 (498)
Q Consensus 453 ~~~s~l~~~~~~v~Ig~~~~i~---~~iI~~~~~Ig 485 (498)
+.|+++++|. +.++|++++|+
T Consensus 329 ------------~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 329 ------------VRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred ------------CEECCCcccccccceEEcCCceec
Confidence 8899998886 36778777775
|
Alternate name: dTDP-D-glucose synthase |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=71.99 Aligned_cols=94 Identities=14% Similarity=0.190 Sum_probs=51.6
Q ss_pred CCCCccCCCeEec-Ceeee-ceEEcCCCEECceEE-eccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCccc
Q 010874 388 YTSPRFLPPTKID-NCRIK-DAIISHGCFLRECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVP 464 (498)
Q Consensus 388 ~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~~~~v-~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~ 464 (498)
..++.+++++.|. ++.|. ++.||++|.|.. +| .+++||.+|.||++|.|. +.+-+. ......++++
T Consensus 11 ~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~-~ig~~a~Ighd~~IG~~~~I~-~~l~G~------~~~pV~IG~~--- 79 (147)
T cd04649 11 RLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG-RISSGVIVGKGSDVGGGASIM-GTLSGG------GNNVISIGKR--- 79 (147)
T ss_pred CCCCEECCCcEECCCCEEccCCEECCCeEECC-cccCCEEECCCCEECCCCEEE-EECCCC------cccCEEECCC---
Confidence 3344444444442 22222 445555555432 22 247888888888888877 332221 0001123333
Q ss_pred EEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 010874 465 IGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 465 v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~ 493 (498)
+.||.++.| +..||+++.||+|+++...
T Consensus 80 ~~IG~ga~I-gv~IG~~~vIGaGsvV~k~ 107 (147)
T cd04649 80 CLLGANSGI-GISLGDNCIVEAGLYVTAG 107 (147)
T ss_pred CEECCCCEE-eEEECCCCEECCCCEEeCC
Confidence 566666766 6778888888888877654
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=9e-06 Score=77.36 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=36.5
Q ss_pred CCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEe---ccEECCCCEECCCCEEcc
Q 010874 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKD 439 (498)
Q Consensus 387 i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~---~siIg~~~~Ig~~~~i~~ 439 (498)
+..++.|.+|.++... .++.||++|+|+ +|+|. +..||++|.|+++|.|..
T Consensus 58 ig~~~~I~~~~~~~~g--~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~ 112 (203)
T PRK09527 58 VGENAWVEPPVYFSYG--SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSV 112 (203)
T ss_pred cCCCcEEcCCEEEeeC--CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEe
Confidence 4456677777766310 267788888888 77763 478999999999998863
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.9e-06 Score=77.45 Aligned_cols=107 Identities=17% Similarity=0.302 Sum_probs=56.6
Q ss_pred CCCCCCCCCCccCCCeEec-Ceeeec-eEEcCCCEEC-ceEE-eccEECCCCEECCCCEEcceEEeCCccccchh-----
Q 010874 382 DPKTPFYTSPRFLPPTKID-NCRIKD-AIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTES----- 452 (498)
Q Consensus 382 ~~~~~i~~~~~i~~~~~i~-~~~I~~-s~Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~----- 452 (498)
++...+++.+.+.++++|+ ++.|.+ ++|+++++|+ +|.| .+++|+.+++||++|.|.....++.+.+....
T Consensus 5 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~ 84 (205)
T cd03352 5 GENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGW 84 (205)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcE
Confidence 3445555666666666663 355543 6666666666 5666 36677777777777777663333321111000
Q ss_pred -H---H-HHhhcCCcccEEeCCCcEEee-----eEECCCCEECCCcEEe
Q 010874 453 -E---I-ASLLAEGKVPIGVGRNTKIRN-----CIIDKNVKIGKDVVIV 491 (498)
Q Consensus 453 -~---~-~s~l~~~~~~v~Ig~~~~i~~-----~iI~~~~~Ig~~~~i~ 491 (498)
+ . ..+++++ +.|++++.+.. +.|++++.|+.++.|.
T Consensus 85 ~~~~~~~~v~Ig~~---~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~ 130 (205)
T cd03352 85 VKIPQLGGVIIGDD---VEIGANTTIDRGALGDTVIGDGTKIDNLVQIA 130 (205)
T ss_pred EEcCCcceEEECCC---EEECCCCEEeccccCCeEECCCCEECCceEEe
Confidence 0 0 2233444 56666666652 4556666555555553
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00022 Score=68.21 Aligned_cols=181 Identities=21% Similarity=0.239 Sum_probs=104.5
Q ss_pred EEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
.|||.|-|.++||.- |.|.+++|+ |||+|+++.+.+++ +++|+|.|.. +.+.+.+. . ++ ..
T Consensus 1 iaiIpAR~gS~rlp~------Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~~-~-------~g-~~ 62 (217)
T PF02348_consen 1 IAIIPARGGSKRLPG------KNLKPLGGK-PLIEYVIERAKQSKLIDEIVVATDD--EEIDDIAE-E-------YG-AK 62 (217)
T ss_dssp EEEEEE-SSSSSSTT------GGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHHH-H-------TT-SE
T ss_pred CEEEecCCCCCCCCc------chhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHHH-H-------cC-Ce
Confidence 389999999999985 999999999 99999999999974 7999888854 45555553 3 23 22
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCC-eEEEEEec
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDAD-ITISCAAV 251 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h~~~~ad-~tv~~~~~ 251 (498)
|.+..... ..++......+..+.. ...+.++.+.||. +.+ ..+..+++.+.+..++ +.-...+.
T Consensus 63 v~~~~~~~---------~~~~~r~~~~~~~~~~----~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~~ 129 (217)
T PF02348_consen 63 VIFRRGSL---------ADDTDRFIEAIKHFLA----DDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDPV 129 (217)
T ss_dssp EEE--TTS---------SSHHHHHHHHHHHHTC----STTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEEE
T ss_pred eEEcChhh---------cCCcccHHHHHHHhhh----hHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhccccccc
Confidence 43332221 1344333333322221 1224789999998 333 4578899999888776 32223332
Q ss_pred CC-CC--CCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHH-HHH
Q 010874 252 GE-SR--ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLF 319 (498)
Q Consensus 252 ~~-~~--~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~-vL~ 319 (498)
.. .. ..+.-....+.++....+.+.+......... .+. ..++...++|.++.. .+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--------~~~~~~~~~~~~~~~~~~~ 189 (217)
T PF02348_consen 130 GSSVEIFNFNPLKVLFDDDGLELYFSEHVIPYIRRNPE----EFK--------YFYIRQVGIYAFRKEMFLE 189 (217)
T ss_dssp CSHHHHTSTTSTEEEECTTSBEEEEESSESSECHHHHC----SSS--------STEEEEEEEEEEEHHHHHH
T ss_pred cchhhcccccceEEEeccccchhhcccCCCcccccccc----ccc--------ccccccccccccccccccc
Confidence 21 00 1112223445556666666654432110000 000 125778999999997 443
|
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C .... |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.8e-06 Score=69.06 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=48.7
Q ss_pred cCCCeEe-cCeeee-ceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCC
Q 010874 393 FLPPTKI-DNCRIK-DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (498)
Q Consensus 393 i~~~~~i-~~~~I~-~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~ 470 (498)
+++.++| .++.|. +++||++|.|+. .|++|+|++++.|+.+++|.++++.++ +.||++
T Consensus 32 IG~~~~Ig~~~~I~~~v~IG~~~~Ig~-~i~~svi~~~~~i~~~~~lg~siIg~~-------------------v~ig~~ 91 (101)
T cd05635 32 IGPGSRVKMGARIYGNTTIGPTCKIGG-EVEDSIIEGYSNKQHDGFLGHSYLGSW-------------------CNLGAG 91 (101)
T ss_pred ECCCCEECCCCEEeCcCEECCCCEECC-EECccEEcCCCEecCcCEEeeeEECCC-------------------CEECCC
Confidence 3334444 235554 588888888874 678999999999999999999999888 899988
Q ss_pred cEEee
Q 010874 471 TKIRN 475 (498)
Q Consensus 471 ~~i~~ 475 (498)
+.+.|
T Consensus 92 ~~~~~ 96 (101)
T cd05635 92 TNNSD 96 (101)
T ss_pred ceecc
Confidence 87654
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.5e-06 Score=83.90 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=12.3
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~ 491 (498)
|.||.|+.| +++.||+++.||+|++|.
T Consensus 285 V~IGagA~IlggV~IGdga~IGAgSVV~ 312 (360)
T PLN02357 285 VLIGAGTCILGNITIGEGAKIGAGSVVL 312 (360)
T ss_pred eEECCceEEECCeEECCCCEECCCCEEC
Confidence 444444433 344444444444444443
|
|
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.3e-06 Score=74.99 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=22.0
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||.++.|. +++||+++.||++++|..
T Consensus 120 v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~ 148 (162)
T TIGR01172 120 VMIGAGAKVLGNIEVGENAKIGANSVVLK 148 (162)
T ss_pred cEEcCCCEEECCcEECCCCEECCCCEECC
Confidence 7788777774 578888888888888874
|
Cysteine biosynthesis |
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.4e-05 Score=84.22 Aligned_cols=96 Identities=19% Similarity=0.312 Sum_probs=63.6
Q ss_pred CeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEECCCC---------CEEEEEeCCCccccccc
Q 010874 215 ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG---------RIAQFAEKPSGANLKAM 285 (498)
Q Consensus 215 e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d~~g---------rV~~~~EKp~~~~~~~~ 285 (498)
.-++|..||.++...-...+.. .+++++++..|.+-+-+++.|+...|+++ .+..|..||.....
T Consensus 54 pGv~V~s~D~vl~~~~~~~~~~---~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem--- 127 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPDDPLIDW---DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEM--- 127 (414)
T ss_pred cceEEEecccccccCccccCCC---CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHH---
Confidence 4589999995443221222221 23678888888876667899999999988 78899999987643
Q ss_pred cccccccCCCccccccCCcceeeeEEEEcHHHHHHHHH
Q 010874 286 QVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR 323 (498)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~ 323 (498)
+-...++ .......++|++.|+.+....++.
T Consensus 128 ~~~~av~-------~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 128 RASGAVL-------PDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred HhCCccc-------CCCcccccccceeccHHHHHHHHH
Confidence 2111111 112346689999999887766654
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.3e-05 Score=73.66 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=30.1
Q ss_pred CCCCCCCccCCCeEec---Ceeee-ceEEcCCCEEC-ceEEe---------ccEECCCCEECCCCEEcc
Q 010874 385 TPFYTSPRFLPPTKID---NCRIK-DAIISHGCFLR-ECTVE---------HSIVGERSRLDYGVELKD 439 (498)
Q Consensus 385 ~~i~~~~~i~~~~~i~---~~~I~-~s~Ig~~~~I~-~~~v~---------~siIg~~~~Ig~~~~i~~ 439 (498)
..+..++.++++++|. ++.|. +++||++|.|+ ++++. +++||++|.||++|.|..
T Consensus 62 ~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~ 130 (162)
T TIGR01172 62 VDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLG 130 (162)
T ss_pred eEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEEC
Confidence 3444555566666553 13443 36666666665 45543 246666666666665544
|
Cysteine biosynthesis |
| >PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00012 Score=77.17 Aligned_cols=215 Identities=20% Similarity=0.312 Sum_probs=125.2
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHh----cCC-CeEEEEeccC-chhHHHHHHhhccC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN----SGI-NKIFVLTQFN-SASLNRHIARTYFG 165 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~----sGi-~~I~Vv~~~~-~~~l~~hl~~~~~~ 165 (498)
..++.+|+||||.||||. ..-||.|+||.....+++..++++.. .|. -..+|.++++ .+...+++.+ |++
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k-yfg 129 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK-YFG 129 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH-GCG
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH-hcC
Confidence 567889999999999998 57899999996554789988888764 243 2467777755 5678888865 765
Q ss_pred CCCc---CCCCeEEEecccC-CCCCC-------CCcc-ccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceeeecCHH
Q 010874 166 NGTN---FGDGFVEVLAATQ-TPGES-------GKNW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYM 231 (498)
Q Consensus 166 ~~~~---~~~~~V~v~~~~q-~~~~~-------~~~~-~~Gta~Alr~~~--~~i~~~~~~~~e~~Lvl~GD~l~~~dl~ 231 (498)
...+ |.++.+-.+..+. .+-+. ...| +.|.||...... ..+++......+++.|.+.|.+...-=-
T Consensus 130 ~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp 209 (420)
T PF01704_consen 130 LDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDP 209 (420)
T ss_dssp SSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-H
T ss_pred CCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCH
Confidence 4322 1111222221111 00000 0123 458887665553 2455544567799999999997654334
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCCceEEE-ECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeE
Q 010874 232 DFIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV 310 (498)
Q Consensus 232 ~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~-~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI 310 (498)
.++..+.++++++.+-+.+...+. ..-|++. .+..-+++.+.+-|..... ..+- .....+.++|-
T Consensus 210 ~~lG~~~~~~~~~~~evv~Kt~~d-ek~Gvl~~~~G~~~vvEysqip~~~~~-~~~~------------~~~~~~FntnN 275 (420)
T PF01704_consen 210 VFLGYMIEKNADFGMEVVPKTSPD-EKGGVLCRYDGKLQVVEYSQIPKEHMA-EFKD------------IKGFLLFNTNN 275 (420)
T ss_dssp HHHHHHHHTT-SEEEEEEE-CSTT-TSSEEEEEETTEEEEEEGGGS-HHGHH-HHTS------------TTTSBEEEEEE
T ss_pred HHHHHHHhccchhheeeeecCCCC-CceeEEEEeCCccEEEEeccCCHHHHH-hhhc------------cccceEEEece
Confidence 578888889999988777654322 2345544 3322234444444432110 0000 00124668888
Q ss_pred EEEcHHHHHHHHHh
Q 010874 311 YVFKKDVLFKLLRW 324 (498)
Q Consensus 311 Yif~~~vL~~ll~~ 324 (498)
-.|+-+.|+++++.
T Consensus 276 i~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 276 IWFSLDFLKRLLER 289 (420)
T ss_dssp EEEEHHHHHHHHHT
T ss_pred eeEEHHHHHHHHHh
Confidence 89999999988764
|
7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A .... |
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.4e-05 Score=72.39 Aligned_cols=94 Identities=17% Similarity=0.247 Sum_probs=49.9
Q ss_pred CCCccCCCeEecCeeeeceEEcCCCEEC-ceEEe---ccEECCCCEECCCCEEcceEEeCCccccchhHH--------HH
Q 010874 389 TSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVMLGADYYQTESEI--------AS 456 (498)
Q Consensus 389 ~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~---~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~--------~s 456 (498)
..+.+.++..+.-. .+..||++|+|+ ++.|. +.+||++|.|+++|.|..+- +.....+. ..
T Consensus 47 ~~~~i~~~~~~~~~--~~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~-----h~~~~~~~~~~~~~~~~v 119 (169)
T cd03357 47 ENVYIEPPFHCDYG--YNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAG-----HPLDPEERNRGLEYAKPI 119 (169)
T ss_pred CCCEEcCCEEEEeC--CcCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCC-----CCCChhHccccceecCCc
Confidence 34455555544210 145667777776 55553 45788888888888885320 00000000 01
Q ss_pred hhcCCcccEEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 010874 457 LLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 457 ~l~~~~~~v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~ 492 (498)
.++++ +.||.++.| .++.||++|.||+++++..
T Consensus 120 ~IG~~---~~Ig~~a~I~~gv~Ig~~~~VgagavV~~ 153 (169)
T cd03357 120 TIGDN---VWIGGGVIILPGVTIGDNSVIGAGSVVTK 153 (169)
T ss_pred EeCCC---EEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 12222 455555554 3667777777777777665
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.9e-05 Score=74.02 Aligned_cols=46 Identities=13% Similarity=0.330 Sum_probs=30.0
Q ss_pred CCccCCCeEecCeeee-ceEEcCCCEEC-ceEEecc---EECCCCEECCCCEEc
Q 010874 390 SPRFLPPTKIDNCRIK-DAIISHGCFLR-ECTVEHS---IVGERSRLDYGVELK 438 (498)
Q Consensus 390 ~~~i~~~~~i~~~~I~-~s~Ig~~~~I~-~~~v~~s---iIg~~~~Ig~~~~i~ 438 (498)
++.+.||.+. .+. +..||++++|+ +|+|.+. .||++|.|+++|.|.
T Consensus 59 ~~~i~~~~~~---~~g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~ 109 (183)
T PRK10092 59 EAYIEPTFRC---DYGYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIY 109 (183)
T ss_pred CEEEeCCEEE---eecCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEE
Confidence 4556666643 221 56777777777 6655432 788888888888875
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.1e-05 Score=66.19 Aligned_cols=63 Identities=19% Similarity=0.291 Sum_probs=42.5
Q ss_pred eEEcCCCEECceEEeccEECCCCEECCCCE---EcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEee-eEECCCC
Q 010874 407 AIISHGCFLRECTVEHSIVGERSRLDYGVE---LKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNV 482 (498)
Q Consensus 407 s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~---i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~-~iI~~~~ 482 (498)
++|++++.|++ ++.|+.+++|+.++. +.+++|+++ +.|+.++.+.. +.|++++
T Consensus 23 ~~ig~~~~Ig~----~~~i~~~~~i~~~~~~~~~~~~~Ig~~-------------------~~Ig~~~~i~~~~~Ig~~~ 79 (101)
T cd03354 23 IVIGETAVIGD----NCTIYQGVTLGGKGKGGGKRHPTIGDN-------------------VVIGAGAKILGNITIGDNV 79 (101)
T ss_pred EEECCCCEECC----CCEEcCCCEECCCccCCcCCCCEECCC-------------------cEEcCCCEEECcCEECCCC
Confidence 45566666652 134555666665554 566666665 78888887764 8899999
Q ss_pred EECCCcEEeC
Q 010874 483 KIGKDVVIVN 492 (498)
Q Consensus 483 ~Ig~~~~i~~ 492 (498)
.|++++.|.+
T Consensus 80 ~i~~~~~i~~ 89 (101)
T cd03354 80 KIGANAVVTK 89 (101)
T ss_pred EECCCCEECc
Confidence 9999988875
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.07 E-value=2e-05 Score=66.82 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=15.8
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~ 491 (498)
+.||+++.+ .++.|++++.|++++.+.
T Consensus 65 ~~ig~~~~i~~~~~ig~~~~i~~~~~v~ 92 (109)
T cd04647 65 VWIGANVVILPGVTIGDGAVVGAGSVVT 92 (109)
T ss_pred CEECCCCEEcCCCEECCCCEECCCCEEe
Confidence 445555554 356666666666666665
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00019 Score=76.51 Aligned_cols=216 Identities=16% Similarity=0.240 Sum_probs=128.0
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecC---CcchhHHHHHHHHHhc--------------CC-CeEEEEeccC-c
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS--------------GI-NKIFVLTQFN-S 152 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~---G~~pLId~~L~~l~~s--------------Gi-~~I~Vv~~~~-~ 152 (498)
..++.+|+||||.||||. ...||.|++|+ |+ .+++...+++... ++ =..+|.|+.. .
T Consensus 114 ~gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~ 189 (493)
T PLN02435 114 EGKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTD 189 (493)
T ss_pred cCCEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchh
Confidence 367889999999999998 57899999886 77 8999999886431 11 1347778744 5
Q ss_pred hhHHHHHHh-hccCCCCc----CCCCeEEEecccC-----CCCCCCCccccChHHHHHHHHH--HHHhhhcCCCCeEEEE
Q 010874 153 ASLNRHIAR-TYFGNGTN----FGDGFVEVLAATQ-----TPGESGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAIL 220 (498)
Q Consensus 153 ~~l~~hl~~-~~~~~~~~----~~~~~V~v~~~~q-----~~~~~~~~~~~Gta~Alr~~~~--~i~~~~~~~~e~~Lvl 220 (498)
+...+++.+ .||+.... |..+.+-++..+. .+.. -.--+.|.|+..+.... .+++.+....+++.+.
T Consensus 190 ~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~-i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~ 268 (493)
T PLN02435 190 EATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFK-VAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCY 268 (493)
T ss_pred HHHHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcc-cccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEE
Confidence 677788864 34543211 0111111111000 0000 00124688887766543 4565556678999999
Q ss_pred cCcee-eecCHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEE-CCCCC--EEEEEeCCCccccccccccccccCCCc
Q 010874 221 CGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI-DNMGR--IAQFAEKPSGANLKAMQVDTSLLGFSP 296 (498)
Q Consensus 221 ~GD~l-~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~-d~~gr--V~~~~EKp~~~~~~~~~~~~~~~~~~~ 296 (498)
+-|.+ ...---.++-.+.+.++++.+-+.+...+. ..-|++.. +.+|+ |+.+.|-+....... .-+++.|
T Consensus 269 ~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~-EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~-~~~~g~L---- 342 (493)
T PLN02435 269 GVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQ-EKVGVFVRRGKGGPLTVVEYSELDQAMASAI-NQQTGRL---- 342 (493)
T ss_pred ecccccccccCHHHHHHHHhcCCceEEEeeecCCCC-CceeEEEEecCCCCEEEEEeccCCHHHHhcc-Ccccccc----
Confidence 99995 433334577788888999887665443211 23466543 34554 666665443211100 0011111
Q ss_pred cccccCCcceeeeEEEEcHHHHHHHHH
Q 010874 297 QEARKCPYVASMGVYVFKKDVLFKLLR 323 (498)
Q Consensus 297 ~~~~~~~~l~~~GIYif~~~vL~~ll~ 323 (498)
.....+++.++|+-++|.++.+
T Consensus 343 -----~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 343 -----RYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred -----ccchhhHHHhhccHHHHHHHHH
Confidence 2357788999999999988753
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.2e-05 Score=74.25 Aligned_cols=35 Identities=9% Similarity=0.144 Sum_probs=28.0
Q ss_pred ceEEcCCCEEC-ceEEe---ccEECCCCEECCCCEEcce
Q 010874 406 DAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDT 440 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~---~siIg~~~~Ig~~~~i~~s 440 (498)
...||++|.|+ ++.|. ...||++|.|++++.|.+.
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~ 103 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDH 103 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECC
Confidence 47788888887 67664 6799999999999988763
|
|
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.6e-05 Score=86.24 Aligned_cols=198 Identities=18% Similarity=0.192 Sum_probs=128.2
Q ss_pred eEEEEcCceeeecC--HHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEECCC--CCEEEEEeCCCccccccccccccc
Q 010874 216 NVAILCGDHLYRMD--YMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM--GRIAQFAEKPSGANLKAMQVDTSL 291 (498)
Q Consensus 216 ~~Lvl~GD~l~~~d--l~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d~~--grV~~~~EKp~~~~~~~~~~~~~~ 291 (498)
.+||..||.+..++ +.+ -.++|++......+.+..+++|+...|.+ +++..+..||..++..++.
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~----- 222 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLS----- 222 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhh-----
Confidence 79999999876554 222 13466666666666556788999999887 6888888999876542221
Q ss_pred cCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC------CCchhhhhHHHH----------hhcCceEEEEEc-ce
Q 010874 292 LGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT------SNDFGSEIIPAA----------IMEHDVQAYIFR-DY 354 (498)
Q Consensus 292 ~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~------~~df~~dii~~~----------i~~~~I~~~~~~-~~ 354 (498)
.....+.++|+|+|+.+....+++..+.+ ..|+.+|++..+ ++..++....+. +-
T Consensus 223 --------~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 223 --------KTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred --------cCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 11346889999999999888777654321 235555655443 233455555554 46
Q ss_pred EeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEecCeeeeceEEcCCCEEC-c-eEEeccEECCCCEEC
Q 010874 355 WEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-E-CTVEHSIVGERSRLD 432 (498)
Q Consensus 355 w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~-~~v~~siIg~~~~Ig 432 (498)
++.+||-..|+.....+.+..- +. ..+.+...-..|+ +-|.||+|+.+|.++ + +.|++|.|+.+++||
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~~-----~~-~~i~~~~~~~~~~----~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig 364 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLVT-----DQ-RRIMHRKVKPHPA----MFVQNAVLSGKLTAENATLWIENSHVGEGWKLA 364 (974)
T ss_pred eEEecCcHHHhcCchhHHHHhh-----hh-hhhhccccCCCCc----eEEEeeEecCCcccCCCeEEEEeeEecCCeEEc
Confidence 8899999888865444433210 00 0111111101111 245589999999999 4 458999999999999
Q ss_pred CCCEEcceEE
Q 010874 433 YGVELKDTVM 442 (498)
Q Consensus 433 ~~~~i~~svi 442 (498)
.+|.|.+...
T Consensus 365 ~~~Iisgv~~ 374 (974)
T PRK13412 365 SRSIITGVPE 374 (974)
T ss_pred CCcEEecccc
Confidence 9999988743
|
|
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.8e-05 Score=70.59 Aligned_cols=28 Identities=18% Similarity=0.423 Sum_probs=16.9
Q ss_pred ccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 463 VPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 463 ~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
.|+.||++|+|+ +|.| ++.||++++|..
T Consensus 72 ~pV~IG~~~~IG~ga~I--gv~IG~~~vIGa 100 (147)
T cd04649 72 NVISIGKRCLLGANSGI--GISLGDNCIVEA 100 (147)
T ss_pred cCEEECCCCEECCCCEE--eEEECCCCEECC
Confidence 456666666665 5555 466666666654
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.9e-05 Score=76.85 Aligned_cols=29 Identities=7% Similarity=0.176 Sum_probs=19.6
Q ss_pred EEeCCCcEEeeeEECCCCEECCCcEEeCCC
Q 010874 465 IGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494 (498)
Q Consensus 465 v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~ 494 (498)
|.||.||.| +..||++|+||+|+++...-
T Consensus 232 ~~IGagA~I-GI~IGd~~VVGAGaVVtkgT 260 (319)
T TIGR03535 232 CLLGANSGL-GISLGDDCVVEAGLYVTAGT 260 (319)
T ss_pred cEECCCCEE-CeEECCCCEECCCCEEeCCe
Confidence 455555555 66788888888888776543
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.5e-05 Score=76.31 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=25.0
Q ss_pred CCcccEEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 010874 460 EGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 460 ~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 493 (498)
.++.||.||++|.|+ +|.| +..||++++|...
T Consensus 221 g~~~pV~IGe~~~IGagA~I--GI~IGd~~VVGAG 253 (319)
T TIGR03535 221 GGKEVISIGERCLLGANSGL--GISLGDDCVVEAG 253 (319)
T ss_pred CCcccEEECCCcEECCCCEE--CeEECCCCEECCC
Confidence 346778899988886 7778 7888888888653
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PLN02830 UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0058 Score=67.27 Aligned_cols=222 Identities=14% Similarity=0.155 Sum_probs=127.4
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecC---CcchhHHHHHHHHHhc-----------C-CCeEEEEeccC-chhH
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS-----------G-INKIFVLTQFN-SASL 155 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~---G~~pLId~~L~~l~~s-----------G-i~~I~Vv~~~~-~~~l 155 (498)
..++..|+||||.||||. ..-||.++|++ |+ ++++..++++... + .-..+|.++++ .+..
T Consensus 126 l~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T 201 (615)
T PLN02830 126 AGNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHART 201 (615)
T ss_pred hCcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHH
Confidence 367889999999999998 46799999984 78 8999999997653 1 12467888755 4567
Q ss_pred HHHHHh-hccCCCCc----CCCCeEEEeccc-CCC-CCC----CC-ccccChHHHHHHHH--HHHHhhhcCCCCeEEEEc
Q 010874 156 NRHIAR-TYFGNGTN----FGDGFVEVLAAT-QTP-GES----GK-NWFQGTADAVRQFT--WVFEDAKNRNIENVAILC 221 (498)
Q Consensus 156 ~~hl~~-~~~~~~~~----~~~~~V~v~~~~-q~~-~~~----~~-~~~~Gta~Alr~~~--~~i~~~~~~~~e~~Lvl~ 221 (498)
.+++.+ .||+.... |..+.+-.+... -.. -+. .. -.+.|.|+..+... ..+++......+++.+.+
T Consensus 202 ~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~ 281 (615)
T PLN02830 202 LKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQ 281 (615)
T ss_pred HHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEe
Confidence 778864 34543211 111112222110 000 000 00 12467777665553 245555556778999999
Q ss_pred Ccee-eecCHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEE--CCCCC----EEEEEeCCCccccccccccccccCC
Q 010874 222 GDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI--DNMGR----IAQFAEKPSGANLKAMQVDTSLLGF 294 (498)
Q Consensus 222 GD~l-~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~--d~~gr----V~~~~EKp~~~~~~~~~~~~~~~~~ 294 (498)
.|.. ...-.-.++-.+.++++++.+-+.+... ...-|++.. ..+|+ ++.+.|.+.. ++..+.+..-+..
T Consensus 282 vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~l--l~~a~~p~g~l~~ 357 (615)
T PLN02830 282 DTNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPL--LRATGHPDGDVND 357 (615)
T ss_pred ccchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHH--HHhccCCCccccc
Confidence 9993 2322367888899999998887766532 233455443 22344 3355555322 1111111111110
Q ss_pred CccccccCCcceeeeEEEEcHHHHHHHHHh
Q 010874 295 SPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (498)
Q Consensus 295 ~~~~~~~~~~l~~~GIYif~~~vL~~ll~~ 324 (498)
... ....-.|+..-+++-..+.++|+.
T Consensus 358 ~~~---~s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 358 ETG---YSPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred ccc---cccCCCCceeeEeeHHHHHHHHHh
Confidence 000 011224888899998888887764
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=97.95 E-value=5e-05 Score=64.68 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=20.2
Q ss_pred eEEcCCCEEC-ceEEe---ccEECCCCEECCCCEEc
Q 010874 407 AIISHGCFLR-ECTVE---HSIVGERSRLDYGVELK 438 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~---~siIg~~~~Ig~~~~i~ 438 (498)
..||++|.|+ ++.|. ...||++|.|++++.|.
T Consensus 4 i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~ 39 (107)
T cd05825 4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLC 39 (107)
T ss_pred EEECCCCEECCCCEEeeCCceEECCCCEECCCeEee
Confidence 3455555555 45443 35778888888777774
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=97.92 E-value=3e-05 Score=78.53 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=15.2
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~ 491 (498)
|.||.|++| +++.||+++.||+|++|.
T Consensus 264 V~IGagA~IlG~V~IGd~aiIGAGSVV~ 291 (355)
T PLN02739 264 ALLGACVTILGNISIGAGAMVAAGSLVL 291 (355)
T ss_pred CEEcCCCEEeCCeEECCCCEECCCCEEC
Confidence 455555544 355566666666666554
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.6e-05 Score=64.50 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=16.9
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~ 492 (498)
+.||+++.| .+++|.+++.|++++.+..
T Consensus 59 ~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~ 87 (109)
T cd04647 59 IVIGDDVWIGANVVILPGVTIGDGAVVGA 87 (109)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEECC
Confidence 566666666 4566666666666666543
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00019 Score=67.83 Aligned_cols=115 Identities=20% Similarity=0.352 Sum_probs=79.3
Q ss_pred eEEEEEeCCC-CCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCch--hHHHHHHhhccCCCCcC
Q 010874 95 VAAIILGGGA-GTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSA--SLNRHIARTYFGNGTNF 170 (498)
Q Consensus 95 m~aVILAaG~-GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~--~l~~hl~~~~~~~~~~~ 170 (498)
|-++|+.|-. +|||.. |.|+|++|. |||+++|+++..+. +++|+|.|+...+ .|..+.. . .
T Consensus 3 ~I~~IiQARmgStRLpg------KvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~-~-------~ 67 (241)
T COG1861 3 MILVIIQARMGSTRLPG------KVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCR-S-------H 67 (241)
T ss_pred cEEEEeeecccCccCCc------chhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHH-H-------c
Confidence 3455555555 578875 999999999 99999999999875 7899999986543 3444432 1 1
Q ss_pred CCCeEEEecccCCCCCCCCccccChH-HHHHHHHHHHHhhhcCCCCeEEEEcCce-eeecCH-HHHHHHHHHcCCCe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTA-DAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDY-MDFIQSHVDRDADI 244 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta-~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~dl-~~ll~~h~~~~ad~ 244 (498)
| +.++ +|.+ +.|..+...++. ...+.++=+.||. +.+.++ ..+++.|-++|+|.
T Consensus 68 G---~~vf--------------rGs~~dVL~Rf~~a~~a---~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 68 G---FYVF--------------RGSEEDVLQRFIIAIKA---YSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred C---eeEe--------------cCCHHHHHHHHHHHHHh---cCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 2 3333 2444 555555555542 3446888899999 555554 77889999998873
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.9e-05 Score=67.19 Aligned_cols=28 Identities=29% Similarity=0.539 Sum_probs=14.4
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+.||.++.|. ++.||+++.||+++++..
T Consensus 99 ~~Ig~~~~I~~~v~IG~~~~Igags~V~~ 127 (146)
T PRK10191 99 VELGANVIILGDITIGNNVTVGAGSVVLD 127 (146)
T ss_pred cEEcCCCEEeCCCEECCCCEECCCCEECC
Confidence 4455444443 355555555555555543
|
|
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00042 Score=72.55 Aligned_cols=213 Identities=17% Similarity=0.309 Sum_probs=127.4
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecC-CcchhHHHHHHHHHh----cCCC-eEEEEeccCchhHHHH-HHhhcc
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCIN----SGIN-KIFVLTQFNSASLNRH-IARTYF 164 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~-G~~pLId~~L~~l~~----sGi~-~I~Vv~~~~~~~l~~h-l~~~~~ 164 (498)
-.++.+|+||||+||||. ..-||.+++|. |+ ++++.+.+.+.. .+++ ..+|.++.+.++-..+ ....|+
T Consensus 103 ~~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~ 178 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYF 178 (472)
T ss_pred cCceEEEEecCCcccccc---cCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhc
Confidence 567899999999999998 46799999999 77 999999888765 3432 4677788887544444 345565
Q ss_pred CCCC-c---CCCCeEE-EecccCCC---CCCC-Ccc-ccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCceee-ecCHH
Q 010874 165 GNGT-N---FGDGFVE-VLAATQTP---GESG-KNW-FQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLY-RMDYM 231 (498)
Q Consensus 165 ~~~~-~---~~~~~V~-v~~~~q~~---~~~~-~~~-~~Gta~Alr~~~~--~i~~~~~~~~e~~Lvl~GD~l~-~~dl~ 231 (498)
+... + |.+..+- +...+..+ .... ..| +.|.|+-...... .+++......+.+.|.+.|.+. ..|+
T Consensus 179 ~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~- 257 (472)
T COG4284 179 GLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL- 257 (472)
T ss_pred CCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH-
Confidence 5311 1 1111111 11110000 0000 123 4677665444432 4444444577999999999965 3454
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCCceEEE-ECCCCCEEEEEeCCCccccccccccccccCCCccccccCCccee-ee
Q 010874 232 DFIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS-MG 309 (498)
Q Consensus 232 ~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~-~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G 309 (498)
.++..|.+.+.+.++=++.-.... .+-|++. .|+.-||+.+.|-|......-+. .........+ .+
T Consensus 258 ~~lg~~~~~~~e~~~e~t~Kt~a~-ekvG~Lv~~~g~~rllEysev~~~~~~~~~s-----------~~~~~~~n~Nni~ 325 (472)
T COG4284 258 KFLGFMAETNYEYLMETTDKTKAD-EKVGILVTYDGKLRLLEYSEVPNEHREEFTS-----------DGKLKYFNTNNIW 325 (472)
T ss_pred HHHHHHHhcCcceeEEEeeccccc-ccceEEEEeCCceEEEEEecCChhHhhhhcc-----------ccceeeeccccce
Confidence 467888888988877655433211 3456655 78778999998877642211000 0001113344 78
Q ss_pred EEEEcHHHHHHH
Q 010874 310 VYVFKKDVLFKL 321 (498)
Q Consensus 310 IYif~~~vL~~l 321 (498)
+|+++-+.|.+.
T Consensus 326 l~~~~~~~l~~~ 337 (472)
T COG4284 326 LHLFSVKFLKEA 337 (472)
T ss_pred eehhHHHHHHhh
Confidence 888888877643
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.8e-05 Score=67.64 Aligned_cols=66 Identities=14% Similarity=0.277 Sum_probs=38.6
Q ss_pred ceEEcCCCEEC-ceEEe--------ccEECCCCEECCCCEEcc-eEEeCCccccchhHHHHhhcCCcccEEeCCCcEEee
Q 010874 406 DAIISHGCFLR-ECTVE--------HSIVGERSRLDYGVELKD-TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~--------~siIg~~~~Ig~~~~i~~-svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~ 475 (498)
++.||++|.|+ +++|. .++||++|.||+++.|.+ ..+.++ +.||.++.+.+
T Consensus 67 ~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~-------------------~~Igags~V~~ 127 (146)
T PRK10191 67 NVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNN-------------------VTVGAGSVVLD 127 (146)
T ss_pred CcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCC-------------------CEECCCCEECC
Confidence 35555555555 44442 247788888887777754 333333 67777777766
Q ss_pred eEECCCCEECCCcEE
Q 010874 476 CIIDKNVKIGKDVVI 490 (498)
Q Consensus 476 ~iI~~~~~Ig~~~~i 490 (498)
.+-.....+|..+.+
T Consensus 128 dv~~~~~v~G~pA~~ 142 (146)
T PRK10191 128 SVPDNALVVGEKARV 142 (146)
T ss_pred ccCCCcEEEccCcEE
Confidence 555555555555443
|
|
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.5e-05 Score=76.69 Aligned_cols=89 Identities=10% Similarity=0.216 Sum_probs=55.9
Q ss_pred CCCCCccCCCeEec---Ceeee-ceEEcCCCEEC-ceEEe---------ccEECCCCEECCCCEEcceE-EeCCccccch
Q 010874 387 FYTSPRFLPPTKID---NCRIK-DAIISHGCFLR-ECTVE---------HSIVGERSRLDYGVELKDTV-MLGADYYQTE 451 (498)
Q Consensus 387 i~~~~~i~~~~~i~---~~~I~-~s~Ig~~~~I~-~~~v~---------~siIg~~~~Ig~~~~i~~sv-i~~~~~~~~~ 451 (498)
|+..++|+.++.|. ++.|. +++||++|.|. +++|. +++||++|.||.|+.|.+.+ |.++
T Consensus 229 I~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdg------ 302 (360)
T PLN02357 229 IHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEG------ 302 (360)
T ss_pred eCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCC------
Confidence 44455555555553 23343 35666666665 44442 57899999999998885444 4444
Q ss_pred hHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCC
Q 010874 452 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494 (498)
Q Consensus 452 ~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~ 494 (498)
+.||.+++|...+-...+.+|.-+.+.+..
T Consensus 303 -------------a~IGAgSVV~~dVP~~~~v~G~PArvv~~~ 332 (360)
T PLN02357 303 -------------AKIGAGSVVLKDVPPRTTAVGNPARLIGGK 332 (360)
T ss_pred -------------CEECCCCEECcccCCCcEEECCCeEEEccC
Confidence 788888888766555555666666665543
|
|
| >cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00067 Score=68.63 Aligned_cols=215 Identities=12% Similarity=0.144 Sum_probs=124.6
Q ss_pred EEEEEeCCCCCcccCCccCCCccceec---CCcchhHHHHHHHHHhcC--------C-CeEEEEeccC-chhHHHHHHh-
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCINSG--------I-NKIFVLTQFN-SASLNRHIAR- 161 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI---~G~~pLId~~L~~l~~sG--------i-~~I~Vv~~~~-~~~l~~hl~~- 161 (498)
.+|+||||.||||. ..-||.++|| .|+ .++++..+++.... . =..+|.++.. .++..+++.+
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 47899999999998 5789999999 488 89999999986532 1 2457788744 5677788864
Q ss_pred hccCCCCc----CCCCeEEEec-ccCCC---CCC---CCccccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceee-e
Q 010874 162 TYFGNGTN----FGDGFVEVLA-ATQTP---GES---GKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLY-R 227 (498)
Q Consensus 162 ~~~~~~~~----~~~~~V~v~~-~~q~~---~~~---~~~~~~Gta~Alr~~~--~~i~~~~~~~~e~~Lvl~GD~l~-~ 227 (498)
.||+.... |.++.+-.+. .+... .+. -...+.|.|+..+... ..+++......+++.+..-|... .
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 34543211 1112222221 10000 000 0012568887766553 23454445667888888888843 3
Q ss_pred cCHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEE-C-CCCC--E--EEEEeCCCccccc---cccccccccCCCccc
Q 010874 228 MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI-D-NMGR--I--AQFAEKPSGANLK---AMQVDTSLLGFSPQE 298 (498)
Q Consensus 228 ~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~-d-~~gr--V--~~~~EKp~~~~~~---~~~~~~~~~~~~~~~ 298 (498)
.-.-.++-.+.++++++...+.+... .+.-|++.. + .+|+ | +.+.|-+...... ...++. -.++
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~--~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~-~~~~---- 230 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKP--KEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDD-KTGF---- 230 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCC--CCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCccc-cccc----
Confidence 33345566677788888876665332 234665542 2 3343 4 6665544211100 000000 0111
Q ss_pred cccCCcceeeeEEEEcHHHHHHHHHh
Q 010874 299 ARKCPYVASMGVYVFKKDVLFKLLRW 324 (498)
Q Consensus 299 ~~~~~~l~~~GIYif~~~vL~~ll~~ 324 (498)
...-.++++++|+-+.+.+.++.
T Consensus 231 ---s~f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 231 ---SPFPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred ---ccCCCeeeeEEEeHHHHHHHHhh
Confidence 23578999999999988877764
|
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f |
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.2e-05 Score=72.95 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=29.0
Q ss_pred CCCCCCCccCCCeEec-Ceeeec-eEEcCCCEEC-ceEE-eccEECCCCEECCCCEEc
Q 010874 385 TPFYTSPRFLPPTKID-NCRIKD-AIISHGCFLR-ECTV-EHSIVGERSRLDYGVELK 438 (498)
Q Consensus 385 ~~i~~~~~i~~~~~i~-~~~I~~-s~Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i~ 438 (498)
+.|++.+.|+|+++|. +++|++ |+||+++.|+ ++.| .|.+|--.++||.+++|-
T Consensus 4 ~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~ 61 (260)
T COG1043 4 AKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIF 61 (260)
T ss_pred cccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEe
Confidence 4566666777766663 455543 5555555555 4444 244555555555554443
|
|
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.2e-05 Score=74.35 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=29.3
Q ss_pred CCCCCccCCCeEec---Ceeee-ceEEcCCCEEC-ceEE---------eccEECCCCEECCCCEE-cceEEeCC
Q 010874 387 FYTSPRFLPPTKID---NCRIK-DAIISHGCFLR-ECTV---------EHSIVGERSRLDYGVEL-KDTVMLGA 445 (498)
Q Consensus 387 i~~~~~i~~~~~i~---~~~I~-~s~Ig~~~~I~-~~~v---------~~siIg~~~~Ig~~~~i-~~svi~~~ 445 (498)
|+..++|+++++|+ +..|+ ++.||++|.|. ++++ .+++||++|.||.||.| .++.|.++
T Consensus 163 I~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~ 236 (294)
T PLN02694 163 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEG 236 (294)
T ss_pred eCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCC
Confidence 34444455555543 23333 24444444444 3333 24677777777777766 34444333
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.2e-05 Score=58.32 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=15.4
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEE
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVI 490 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i 490 (498)
+.|+.++.|. ++.|++++.|++++.|
T Consensus 51 ~~v~~~~~i~~~~~ig~~~~i~~~s~v 77 (78)
T cd00208 51 VEIGANAVIHGGVKIGDNAVIGAGAVV 77 (78)
T ss_pred cEECCCCEEeCCCEECCCCEECcCcEe
Confidence 4555555553 4666666777666655
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.5e-05 Score=71.51 Aligned_cols=27 Identities=7% Similarity=0.134 Sum_probs=13.4
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~ 491 (498)
+.||.++.| .++.||+++.||+++++.
T Consensus 131 ~~Ig~~a~I~~Gv~Ig~~~vIga~svV~ 158 (182)
T PRK10502 131 CWLAADVFVAPGVTIGSGAVVGARSSVF 158 (182)
T ss_pred cEEcCCCEEcCCCEECCCCEECCCCEEe
Confidence 444444444 245555555555555543
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.2e-05 Score=69.13 Aligned_cols=27 Identities=37% Similarity=0.553 Sum_probs=16.7
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~ 491 (498)
|.||.|++| ++-.||+|++||+|+++.
T Consensus 126 V~IGagAkILG~I~IGd~akIGA~sVVl 153 (194)
T COG1045 126 VYIGAGAKILGNIEIGDNAKIGAGSVVL 153 (194)
T ss_pred eEECCCCEEEcceEECCCCEECCCceEc
Confidence 566666544 455566666666666654
|
|
| >PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00096 Score=62.03 Aligned_cols=96 Identities=14% Similarity=0.173 Sum_probs=60.1
Q ss_pred CCccceecCC--cchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccc
Q 010874 115 AATPAVPVAG--CYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF 192 (498)
Q Consensus 115 ~PK~LlpI~G--~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~ 192 (498)
.+|+|++++| + |||+|+++.+. +.+++|+|+++... .+ . ..+ +.++. +...+
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~~-~~-----~-------~~~---~~~i~-d~~~g------- 56 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPGQ-PL-----P-------ELP---APVLR-DELRG------- 56 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCCc-cc-----c-------cCC---CCEec-cCCCC-------
Confidence 4899999999 9 99999999875 56899999997542 11 0 111 23443 22221
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeecC-HHHHHHHHHH
Q 010874 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVD 239 (498)
Q Consensus 193 ~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~d-l~~ll~~h~~ 239 (498)
+|...++..++..... ...+.++|+.||+ +.+.+ +..+++.+..
T Consensus 57 ~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 57 LGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred CCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 4666655544433211 1347899999999 44444 5666665433
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0002 Score=71.03 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=30.9
Q ss_pred CCCCCccCCCeEec---Ceeee-ceEEcCCCEEC-ceEEe---------ccEECCCCEECCCCEEcceE
Q 010874 387 FYTSPRFLPPTKID---NCRIK-DAIISHGCFLR-ECTVE---------HSIVGERSRLDYGVELKDTV 441 (498)
Q Consensus 387 i~~~~~i~~~~~i~---~~~I~-~s~Ig~~~~I~-~~~v~---------~siIg~~~~Ig~~~~i~~sv 441 (498)
|++.+.|++++.|+ +..|+ ++.||++|.|. +++|. +.+||++|.||.||.|.+.+
T Consensus 144 I~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv 212 (273)
T PRK11132 144 IHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNI 212 (273)
T ss_pred ecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCC
Confidence 34455555555553 23332 35566666665 44443 35777777777777775443
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00021 Score=72.45 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=32.0
Q ss_pred CCCCCccCCCeEec---Ceeee-ceEEcCCCEEC-ceEEe---------ccEECCCCEECCCCEEcce
Q 010874 387 FYTSPRFLPPTKID---NCRIK-DAIISHGCFLR-ECTVE---------HSIVGERSRLDYGVELKDT 440 (498)
Q Consensus 387 i~~~~~i~~~~~i~---~~~I~-~s~Ig~~~~I~-~~~v~---------~siIg~~~~Ig~~~~i~~s 440 (498)
|+..+.|+.++.|. ++.|. +++||++|.|. +++|. +.+||++|.||.|+.|-+.
T Consensus 208 I~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~ 275 (355)
T PLN02739 208 IHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGN 275 (355)
T ss_pred cCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCC
Confidence 44555566666663 34443 46666666665 55552 4677777777777766443
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0003 Score=59.11 Aligned_cols=17 Identities=12% Similarity=0.372 Sum_probs=9.2
Q ss_pred cEECCCCEECCCCEEcc
Q 010874 423 SIVGERSRLDYGVELKD 439 (498)
Q Consensus 423 siIg~~~~Ig~~~~i~~ 439 (498)
++||++|.|+.++.+..
T Consensus 55 ~~Ig~~~~Ig~~~~i~~ 71 (101)
T cd03354 55 PTIGDNVVIGAGAKILG 71 (101)
T ss_pred CEECCCcEEcCCCEEEC
Confidence 34555555555555543
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00051 Score=68.57 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=22.7
Q ss_pred hhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 457 LLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 457 ~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+-+.++.||.||++|.|+ +|.| +..||++++|..
T Consensus 243 LsGg~~~~V~IGe~~lIGagA~I--GI~IGd~~iIGA 277 (341)
T TIGR03536 243 LSGGGNIVISVGEGCLLGANAGI--GIPLGDRCTVEA 277 (341)
T ss_pred EeCCCceeEEECCCcEECCCCEE--eeEECCCCEECC
Confidence 345556667777777775 6666 677777777754
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00047 Score=64.66 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=7.5
Q ss_pred eeEECCCCEECCCcEE
Q 010874 475 NCIIDKNVKIGKDVVI 490 (498)
Q Consensus 475 ~~iI~~~~~Ig~~~~i 490 (498)
++.||+++.||+++++
T Consensus 147 gv~IG~~~vIgagsvV 162 (183)
T PRK10092 147 GVTIGDNVVVASGAVV 162 (183)
T ss_pred CCEECCCCEECCCCEE
Confidence 3444444444444444
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00057 Score=65.12 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=14.1
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||.++.|. ++.||+++.||+++++..
T Consensus 138 v~IG~~~~I~~gv~IG~~~vIgagsvV~k 166 (203)
T PRK09527 138 VWIGSHVVINPGVTIGDNSVIGAGSVVTK 166 (203)
T ss_pred cEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 3344433332 455566666666665543
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00097 Score=63.02 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=17.0
Q ss_pred EEeCCCcEEe-------eeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKIR-------NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i~-------~~iI~~~~~Ig~~~~i~~ 492 (498)
+.||++++|+ +++||+++.||+++++..
T Consensus 131 v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~ 165 (192)
T PRK09677 131 VVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTK 165 (192)
T ss_pred eEEcCCcEECCCCEEcCCCEECCCCEECCCCEECc
Confidence 5666666663 566666666666666653
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0013 Score=60.84 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=26.4
Q ss_pred CCccCCCeEec-Ceeee---ceEEcCCCEEC-ceEEe-------------------ccEECCCCEECCCCEE
Q 010874 390 SPRFLPPTKID-NCRIK---DAIISHGCFLR-ECTVE-------------------HSIVGERSRLDYGVEL 437 (498)
Q Consensus 390 ~~~i~~~~~i~-~~~I~---~s~Ig~~~~I~-~~~v~-------------------~siIg~~~~Ig~~~~i 437 (498)
+..++++++|. ++.|. +..||++|.|+ ++.|. .++||++|.||.+|.|
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I 133 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVII 133 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEE
Confidence 34445555552 23332 46677777777 66662 3456666666666555
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00074 Score=60.89 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=16.6
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||.++.| .++.|++++.||++++|..
T Consensus 80 ~~Ig~~~~i~~gv~Ig~~~vIgags~V~~ 108 (145)
T cd03349 80 VWIGHGATILPGVTIGDGAVIAAGAVVTK 108 (145)
T ss_pred CEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 444444444 3566777777777776654
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0012 Score=61.84 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=50.2
Q ss_pred ceEEcCCCEEC-ceEE---eccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECC
Q 010874 406 DAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDK 480 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v---~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~ 480 (498)
+..||.+|.++ ++.+ .+..||+++.|+++|.|... .+.........-.....-|+.||++++|+ +++|.+
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~-----~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~Ilp 141 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTN-----SHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILP 141 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecC-----CCCCChhhcccCCceecCCeEECCCeEEcCccEECC
Confidence 56777777777 5543 24557777777777777653 11111111111112333458999999996 677777
Q ss_pred CCEECCCcEEeCC
Q 010874 481 NVKIGKDVVIVNK 493 (498)
Q Consensus 481 ~~~Ig~~~~i~~~ 493 (498)
+++||+|++|...
T Consensus 142 GV~IG~gavigag 154 (190)
T COG0110 142 GVTIGEGAVIGAG 154 (190)
T ss_pred CEEECCCcEEeeC
Confidence 7777777776653
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0022 Score=54.47 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=13.9
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
+.||.++.|. ++.|++++.|++++.+.
T Consensus 63 ~~ig~~~~i~~g~~Ig~~~~i~~gs~v~ 90 (107)
T cd05825 63 AWVAAEAFVGPGVTIGEGAVVGARSVVV 90 (107)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEEe
Confidence 4444444442 45555555555555554
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0011 Score=64.61 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=22.3
Q ss_pred CCccCCCeEecCeeeeceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcce
Q 010874 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDT 440 (498)
Q Consensus 390 ~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~s 440 (498)
++||.|++.+.. .++||+|++|- ++.|. ++.++.++-|.-++.+..|
T Consensus 108 g~RI~p~a~VR~----ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~ 156 (271)
T COG2171 108 GVRIVPGAIVRL----GAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSC 156 (271)
T ss_pred ceeecCccEEee----ccEECCCcEEcccceEEECcccCcceEEeeeeeeecc
Confidence 455555555432 24555555554 34442 4444444444444444444
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0024 Score=59.51 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=37.7
Q ss_pred CCCCCCCccCCCeEec---Ceeee-ceEEcCCCEEC-ceEE---------eccEECCCCEECCCCEEcceEEeC
Q 010874 385 TPFYTSPRFLPPTKID---NCRIK-DAIISHGCFLR-ECTV---------EHSIVGERSRLDYGVELKDTVMLG 444 (498)
Q Consensus 385 ~~i~~~~~i~~~~~i~---~~~I~-~s~Ig~~~~I~-~~~v---------~~siIg~~~~Ig~~~~i~~svi~~ 444 (498)
..|++.+.|+++..|+ +..|. .++||++|.|. ++++ .|-.||+++.||+||.|-+.+-.+
T Consensus 68 ieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IG 141 (194)
T COG1045 68 IEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIG 141 (194)
T ss_pred eeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEEC
Confidence 3456667777777764 23332 46666666665 4444 255899999999998875544433
|
|
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0011 Score=58.73 Aligned_cols=105 Identities=11% Similarity=0.265 Sum_probs=61.2
Q ss_pred CCCccCCCeEe-cCeeee-ceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEEcc----eEEeCC----------cc
Q 010874 389 TSPRFLPPTKI-DNCRIK-DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKD----TVMLGA----------DY 447 (498)
Q Consensus 389 ~~~~i~~~~~i-~~~~I~-~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i~~----svi~~~----------~~ 447 (498)
+++.|.|.+.+ ..+.|+ +.+|++||++. .+++. --+||+++.|.+.+.|.+ ..+|+. ..
T Consensus 7 ~svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~Nv 86 (190)
T KOG4042|consen 7 TSVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNV 86 (190)
T ss_pred ceeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccce
Confidence 45667777776 456664 89999999998 55553 458999999999888866 223332 22
Q ss_pred ccchhHH-HHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeCCCCC
Q 010874 448 YQTESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDES 496 (498)
Q Consensus 448 ~~~~~~~-~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v 496 (498)
++-+... +..+++. -.|+..++++ +|++.++|.||+++.+-..+.+
T Consensus 87 FeVgc~s~A~kvGd~---NVieskayvg~gv~vssgC~vGA~c~v~~~q~l 134 (190)
T KOG4042|consen 87 FEVGCKSSAKKVGDR---NVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNL 134 (190)
T ss_pred EEeechhhhhhhcCc---ceEeeeeEecCCcEEcCCceeccceEEeccccc
Confidence 2222222 3334444 2344444443 4555556666666655554443
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0006 Score=45.87 Aligned_cols=33 Identities=12% Similarity=0.387 Sum_probs=21.4
Q ss_pred ceEEcCCCEEC-ceEE-eccEECCCCEECCCCEEc
Q 010874 406 DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELK 438 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i~ 438 (498)
++.||++|+|+ ++.| .++.||++|.|++++.|.
T Consensus 1 ~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 1 NVVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp TEEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CCEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 35677777777 5654 367777777777777664
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0018 Score=64.70 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=36.7
Q ss_pred cCeeeec-eEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCc
Q 010874 400 DNCRIKD-AIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGAD 446 (498)
Q Consensus 400 ~~~~I~~-s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~ 446 (498)
++|.|++ ++||.+|+|+ ++.+++|+|..++.++..+.|..+++..+.
T Consensus 275 ~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~ 323 (371)
T KOG1322|consen 275 ENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNV 323 (371)
T ss_pred CccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccc
Confidence 4577774 8888888888 778888888888888888888877776653
|
|
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0011 Score=44.25 Aligned_cols=30 Identities=23% Similarity=0.527 Sum_probs=16.4
Q ss_pred eEEcCCCEEC-ceEEeccEECCCCEECCCCEE
Q 010874 407 AIISHGCFLR-ECTVEHSIVGERSRLDYGVEL 437 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i 437 (498)
..||++|+|+ +|.| ...||++|.|++|+.|
T Consensus 2 v~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EEE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred eEECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 4677777777 5555 4666666666666665
|
... |
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0029 Score=71.27 Aligned_cols=82 Identities=13% Similarity=0.327 Sum_probs=41.9
Q ss_pred ceEEcCCCEECc-eEEe--ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEE-eeeEECCC
Q 010874 406 DAIISHGCFLRE-CTVE--HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKN 481 (498)
Q Consensus 406 ~s~Ig~~~~I~~-~~v~--~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i-~~~iI~~~ 481 (498)
.+.||++|.|+. ..++ .+.||++|.|+++|.|.. ..+++..+.- -...++++ +.||.+++| .++.||++
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~-h~~~~~~~~~---~~v~IG~~---~~IG~~a~V~~g~~IGd~ 669 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQT-HLFEDRVMKS---DTVTIGDG---ATLGPGAIVLYGVVMGEG 669 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEe-cccccccccc---CCeEECCC---CEECCCCEECCCCEECCC
Confidence 355666666663 2232 257888888888877754 2222211100 01222233 444444444 35666666
Q ss_pred CEECCCcEEeCCC
Q 010874 482 VKIGKDVVIVNKD 494 (498)
Q Consensus 482 ~~Ig~~~~i~~~~ 494 (498)
+.||+++.+...+
T Consensus 670 a~Ig~~SvV~~g~ 682 (695)
T TIGR02353 670 SVLGPDSLVMKGE 682 (695)
T ss_pred CEECCCCEEcCCc
Confidence 6666666665433
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0018 Score=56.88 Aligned_cols=50 Identities=16% Similarity=0.340 Sum_probs=24.7
Q ss_pred EECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 424 IVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 424 iIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
.||+++.|+++|++.-+.|..- |.+|.|+.|+ .|++-+-++|-+++++..
T Consensus 86 hiGdhVFieE~cVVnAAqIgsy-------------------Vh~GknaviGrrCVlkdCc~ild~tVlPp 136 (184)
T KOG3121|consen 86 HIGDHVFIEEECVVNAAQIGSY-------------------VHLGKNAVIGRRCVLKDCCRILDDTVLPP 136 (184)
T ss_pred eecceEEEecceEeehhhheee-------------------eEeccceeEcCceEhhhheeccCCcccCc
Confidence 4555555555555554444433 4555555553 344444444444444433
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0038 Score=70.27 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=13.6
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~ 491 (498)
+.||.+|.| .++.||+++.|++++.+.
T Consensus 167 ~~IG~~s~I~~g~~Igd~a~vgagS~V~ 194 (695)
T TIGR02353 167 AFIGTRSTLDIDTSIGDGAQLGHGSALQ 194 (695)
T ss_pred cEECCCCEEcCCCEECCCCEECCCCEec
Confidence 444444444 345555555555555544
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.14 Score=52.98 Aligned_cols=357 Identities=15% Similarity=0.207 Sum_probs=170.6
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc----CCC-eEEEEeccCchhHHHHHHhhccCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS----GIN-KIFVLTQFNSASLNRHIARTYFGN 166 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s----Gi~-~I~Vv~~~~~~~l~~hl~~~~~~~ 166 (498)
.+++..+=|-||.||-|. -.-||.+++|-+-+..+|-++.+..+. +++ -.++..+++.++--+.+.+.|.+.
T Consensus 101 L~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~ 177 (498)
T KOG2638|consen 101 LNKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGS 177 (498)
T ss_pred hhheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCC
Confidence 355666779999999998 568999999987668888776665542 333 345556677654444444566332
Q ss_pred CC--------cCCCCeE-EEecccCCCCC-CCCccc-cChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceee-ecCHHH
Q 010874 167 GT--------NFGDGFV-EVLAATQTPGE-SGKNWF-QGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLY-RMDYMD 232 (498)
Q Consensus 167 ~~--------~~~~~~V-~v~~~~q~~~~-~~~~~~-~Gta~Alr~~~--~~i~~~~~~~~e~~Lvl~GD~l~-~~dl~~ 232 (498)
.. +|..-.. +.++.....++ +...|| -|.|+-..... ..++.......|.++|-+.|.+. ..||.
T Consensus 178 kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~- 256 (498)
T KOG2638|consen 178 KVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLN- 256 (498)
T ss_pred ceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHH-
Confidence 21 1221111 12332221111 224565 57766544332 23333334567999999999986 45653
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEE
Q 010874 233 FIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYV 312 (498)
Q Consensus 233 ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYi 312 (498)
+++...+.+....|-+++-...+...-.++..+..-|.+.+..-|.....+=+.+ . .=.+.++.--.
T Consensus 257 ILn~~i~~~~ey~MEvTdKT~aDvKgGtLi~y~G~lrlLEiaQVP~ehv~eFkS~-------k------kFkifNTNNlW 323 (498)
T KOG2638|consen 257 ILNHVINNNIEYLMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSI-------K------KFKIFNTNNLW 323 (498)
T ss_pred HHHHHhcCCCceEEEecccchhhcccceEEeecCEEEEEEeccCChhHhhhhccc-------e------eEEEeccCCeE
Confidence 4555555666665555443221111122333433334455544444321100000 0 01345566566
Q ss_pred EcHHHHHHHHHhhCCCC--------Cchhhhh------HHHHhhc--CceEEEEEcceEeecCCHHHHHHHHHHhhccCC
Q 010874 313 FKKDVLFKLLRWRYPTS--------NDFGSEI------IPAAIME--HDVQAYIFRDYWEDIGTIKSFYEANMALTKESP 376 (498)
Q Consensus 313 f~~~vL~~ll~~~~~~~--------~df~~di------i~~~i~~--~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~ 376 (498)
++-..++++++...-.. -+...++ +-.+++. ..+....-...+..+.+-.|++.....|..-..
T Consensus 324 inLkavKrlve~~~l~meIi~N~kti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~Ly~ld~ 403 (498)
T KOG2638|consen 324 INLKAVKKLVEENALNMEIIVNPKTIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSNLYDLDN 403 (498)
T ss_pred EehHHHHHHhhcCcccceeecChhhccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeecceeeccC
Confidence 66677777776521100 0101111 1222222 111111112345556666666555444432211
Q ss_pred C-ccccCCCCCCCCCCccCCCeEecC--eeeeceEEcCCCEECc-eEEeccEECCCCEECCCCEEcceEEeCCccccchh
Q 010874 377 A-FHFYDPKTPFYTSPRFLPPTKIDN--CRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTES 452 (498)
Q Consensus 377 ~-~~~~~~~~~i~~~~~i~~~~~i~~--~~I~~s~Ig~~~~I~~-~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~ 452 (498)
. +.. .+.....+.+.+ ++++ .+|.. +.+.--.|-. -.+.|=.|.-++..|.++.++++||.-+
T Consensus 404 Gsl~l-~~~r~~~t~P~v----kLg~~F~kv~~-f~~rfp~iP~ileLdhLtVsGdV~FGknV~LkGtViIia------- 470 (498)
T KOG2638|consen 404 GSLTL-SPSRFGPTPPLV----KLGSEFKKVED-FLGRFPGIPDILELDHLTVSGDVWFGKNVSLKGTVIIIA------- 470 (498)
T ss_pred CeEEe-chhhcCCCCCee----ecchhhhHHHH-HHhcCCCCCccceeceEEEeccEEeccceEEeeEEEEEe-------
Confidence 1 110 111111111111 1111 01100 0000000000 1223456666788888888888877543
Q ss_pred HHHHhhcCCcccEEeCCCcEEeeeEECCCCEEC
Q 010874 453 EIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (498)
Q Consensus 453 ~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig 485 (498)
+...+..|.+|+++.|++|-.|.+|-
T Consensus 471 -------~~~~~i~IP~gsVLEn~~v~gn~~il 496 (498)
T KOG2638|consen 471 -------NEGDRIDIPDGSVLENKIVSGNLRIL 496 (498)
T ss_pred -------cCCCeeecCCCCeeecceEecccccc
Confidence 12223778889999888888777764
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0056 Score=58.24 Aligned_cols=74 Identities=19% Similarity=0.332 Sum_probs=55.2
Q ss_pred eeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEEC
Q 010874 402 CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIID 479 (498)
Q Consensus 402 ~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~ 479 (498)
+.++-.++|+...++ ++.|...+++.+++|+.+|.+.+.++.+++ ..||+++.|+ .-++.
T Consensus 29 S~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d------------------ayiGE~~sI~gkl~v~ 90 (277)
T COG4801 29 SMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND------------------AYIGEFSSIKGKLTVI 90 (277)
T ss_pred ceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc------------------eEEeccceeeeeEEEe
Confidence 444455666666667 677778888899999999999888888876 7888888886 34555
Q ss_pred CCCEECCCcEEeCC
Q 010874 480 KNVKIGKDVVIVNK 493 (498)
Q Consensus 480 ~~~~Ig~~~~i~~~ 493 (498)
..-.||+++.|.+.
T Consensus 91 gdLdig~dV~Iegg 104 (277)
T COG4801 91 GDLDIGADVIIEGG 104 (277)
T ss_pred cccccccceEEecC
Confidence 56777777777653
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0069 Score=40.58 Aligned_cols=27 Identities=37% Similarity=0.506 Sum_probs=13.8
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~ 491 (498)
+.|++++.| .+|.||+++.|++++.|.
T Consensus 8 ~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 8 VIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 444444443 245556666666666654
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.014 Score=55.59 Aligned_cols=64 Identities=25% Similarity=0.363 Sum_probs=49.5
Q ss_pred ceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEE
Q 010874 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI 484 (498)
Q Consensus 406 ~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~I 484 (498)
+.+||+++.+ +..++|....+|+++.|.+.++-.+ +.|+.+|.+. |.++..++.|
T Consensus 22 dViIG~nS~l-----~~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~kv~gNV~ve~dayi 77 (277)
T COG4801 22 DVIIGKNSML-----KYGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWCKVTGNVIVENDAYI 77 (277)
T ss_pred cEEEccccee-----eeeeeeeeEEeccCcEEeeeEEecc-------------------eeeeeeeEeeccEEEcCceEE
Confidence 5566666555 4468888888888888888888866 8899888884 7778888888
Q ss_pred CCCcEEeCC
Q 010874 485 GKDVVIVNK 493 (498)
Q Consensus 485 g~~~~i~~~ 493 (498)
|+++.|.+.
T Consensus 78 GE~~sI~gk 86 (277)
T COG4801 78 GEFSSIKGK 86 (277)
T ss_pred eccceeeee
Confidence 888887653
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.022 Score=51.28 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=25.3
Q ss_pred cEEeCCCcEEe-eeEECCCCEECCCcEEeCCCC
Q 010874 464 PIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 464 ~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
++.||++|+|+ +|+|..+++||++++|....-
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~ 105 (145)
T cd03349 73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAV 105 (145)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCE
Confidence 37888888886 788888888888888876543
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.012 Score=51.72 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=17.4
Q ss_pred ceEEcCCCEEC-ceEEeccEECCCCEECCCCEE
Q 010874 406 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVEL 437 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i 437 (498)
+..||+.++|+ +|.|.-..||.-+++|.+|.|
T Consensus 84 p~hiGdhVFieE~cVVnAAqIgsyVh~Gknavi 116 (184)
T KOG3121|consen 84 PVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVI 116 (184)
T ss_pred eeeecceEEEecceEeehhhheeeeEeccceeE
Confidence 45566666666 565554455544444444444
|
|
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.44 Score=40.82 Aligned_cols=98 Identities=12% Similarity=0.041 Sum_probs=65.7
Q ss_pred ceecCCcchhHHHHHHHHHhcC--CCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChH
Q 010874 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sG--i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta 196 (498)
++|..|..+++.++++++.+.+ ..+|+|+.+...+...+.+.+.. .. .. . +....... ..|.+
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~~--~~--~-~~~~~~~~---------~~g~~ 66 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYA-KK--DP--R-VIRVINEE---------NQGLA 66 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHH-hc--CC--C-eEEEEecC---------CCChH
Confidence 4566666689999999999987 78999998877776666664322 10 00 1 22222111 15888
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCH-HHHHHHH
Q 010874 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSH 237 (498)
Q Consensus 197 ~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl-~~ll~~h 237 (498)
.++..+..... .+.++++.+|.++..++ ..++..+
T Consensus 67 ~~~~~~~~~~~------~d~v~~~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 67 AARNAGLKAAR------GEYILFLDADDLLLPDWLERLVAEL 102 (156)
T ss_pred HHHHHHHHHhc------CCEEEEECCCCccCccHHHHHHHHH
Confidence 99988876653 57899999999988775 4443443
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.041 Score=36.65 Aligned_cols=14 Identities=7% Similarity=0.283 Sum_probs=6.3
Q ss_pred EECCCCEECCCCEE
Q 010874 424 IVGERSRLDYGVEL 437 (498)
Q Consensus 424 iIg~~~~Ig~~~~i 437 (498)
.||++|.||++|.|
T Consensus 3 ~IG~~~~ig~~~~i 16 (34)
T PF14602_consen 3 TIGDNCFIGANSTI 16 (34)
T ss_dssp EE-TTEEE-TT-EE
T ss_pred EECCCEEECccccc
Confidence 45666666655554
|
... |
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.042 Score=52.19 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=8.7
Q ss_pred eeEECCCCEECCCcEE
Q 010874 475 NCIIDKNVKIGKDVVI 490 (498)
Q Consensus 475 ~~iI~~~~~Ig~~~~i 490 (498)
|..||+|+.|++|+++
T Consensus 218 nV~IGegavIaAGsvV 233 (269)
T KOG4750|consen 218 NVTIGEGAVIAAGSVV 233 (269)
T ss_pred CeeECCCcEEeccceE
Confidence 4455555555555544
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.13 Score=47.84 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=11.2
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEE
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVI 490 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i 490 (498)
|-||.++.|- +..||+++.||+++++
T Consensus 131 vwIG~~a~IlpGV~IG~gavigagsVV 157 (190)
T COG0110 131 VWIGAGAVILPGVTIGEGAVIGAGSVV 157 (190)
T ss_pred eEEcCccEECCCEEECCCcEEeeCCEE
Confidence 4444444432 3444444444444443
|
|
| >TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.15 Score=47.90 Aligned_cols=84 Identities=17% Similarity=0.184 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHH
Q 010874 127 RLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVF 206 (498)
Q Consensus 127 pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i 206 (498)
|||.|+++.+..+++.+|+|+++. +.+.+++. .++ ++++...+ .|.+.+++.+...+
T Consensus 31 ~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~--------~~~---v~~i~~~~----------~G~~~si~~al~~~ 87 (195)
T TIGR03552 31 AMLRDVITALRGAGAGAVLVVSPD--PALLEAAR--------NLG---APVLRDPG----------PGLNNALNAALAEA 87 (195)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHH--------hcC---CEEEecCC----------CCHHHHHHHHHHHh
Confidence 899999999999888889888874 34433332 122 34443211 28999999997665
Q ss_pred HhhhcCCCCeEEEEcCce--eeecCHHHHHHHH
Q 010874 207 EDAKNRNIENVAILCGDH--LYRMDYMDFIQSH 237 (498)
Q Consensus 207 ~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h 237 (498)
.. ..+.++++.||+ +...++.++++..
T Consensus 88 ~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~ 116 (195)
T TIGR03552 88 RE----PGGAVLILMADLPLLTPRELKRLLAAA 116 (195)
T ss_pred hc----cCCeEEEEeCCCCCCCHHHHHHHHHhc
Confidence 41 235799999998 3345677777765
|
Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis. |
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.1 Score=49.69 Aligned_cols=26 Identities=38% Similarity=0.495 Sum_probs=10.8
Q ss_pred EeCCCcEEe-eeEECCCCEECCCcEEe
Q 010874 466 GVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 466 ~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
+||+|+.|+ .+.|-.|++||+|++|.
T Consensus 202 ~Igd~vliGaGvtILgnV~IGegavIa 228 (269)
T KOG4750|consen 202 KIGDNVLIGAGVTILGNVTIGEGAVIA 228 (269)
T ss_pred cccCCeEEccccEEeCCeeECCCcEEe
Confidence 444444443 22233344444444443
|
|
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.19 Score=53.26 Aligned_cols=100 Identities=13% Similarity=0.163 Sum_probs=60.7
Q ss_pred HHhhcCceEEEEEc-ceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEe-cCeeeeceEEcCCCEEC
Q 010874 339 AAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI-DNCRIKDAIISHGCFLR 416 (498)
Q Consensus 339 ~~i~~~~I~~~~~~-~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~~I~~s~Ig~~~~I~ 416 (498)
..+++..+...... +-++-+||-.+|++--..- +.+. +.. ..+...... .+..+ .++.|.+|+|..++.++
T Consensus 222 ~~Lr~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~----~~l~-~~~-~~~~~~~~~-~~~~~~~~~~VinSil~~~~~vg 294 (414)
T PF07959_consen 222 KLLRGTPLNVVPLPNGKFYHFGTSREYLEHLTSD----SELG-IMR-RKFSHSPAT-TPSDSEASSCVINSILEGGVSVG 294 (414)
T ss_pred HHhhhccccccccCCceEEEecCCHHHHHhhccC----cccc-cce-eeeeccccc-cccccCCCeeEEEeEecCCceEC
Confidence 33455566655554 6678899988665432221 1110 000 001111111 11122 24667789999999999
Q ss_pred -ceEEeccEECCCCEECCCCEEcceEEeCC
Q 010874 417 -ECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (498)
Q Consensus 417 -~~~v~~siIg~~~~Ig~~~~i~~svi~~~ 445 (498)
++.|+||.|+.+++||++|.|.++-+...
T Consensus 295 ~~svIe~s~l~~~~~IG~~cIisGv~~~~~ 324 (414)
T PF07959_consen 295 PGSVIEHSHLGGPWSIGSNCIISGVDINSW 324 (414)
T ss_pred CCCEEEeeecCCCCEECCCCEEECCccccc
Confidence 78899999999999999999998866554
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=91.70 E-value=3.1 Score=36.33 Aligned_cols=109 Identities=12% Similarity=0.152 Sum_probs=69.8
Q ss_pred ceecCCcchhHHHHHHHHHhc--CCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChH
Q 010874 119 AVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~s--Gi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta 196 (498)
.+|.-|....|..+|+.+.+. ...+|+|+-....+...+.+. .+... ...++++...+. .|.+
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~-~~~~~-----~~~i~~i~~~~n---------~g~~ 67 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILE-EYAES-----DPNIRYIRNPEN---------LGFS 67 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHH-HHHCC-----STTEEEEEHCCC---------SHHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccc-ccccc-----cccccccccccc---------cccc
Confidence 467777756889999988876 456777776554444444443 33221 123666654432 4788
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCCeEEEE
Q 010874 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISC 248 (498)
Q Consensus 197 ~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~ad~tv~~ 248 (498)
.++..+..... .+.++++..|.+...+ +..+++.+.+.+.++.+..
T Consensus 68 ~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 68 AARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp HHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred ccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 88888876654 4799999999999887 6888888887676654443
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A .... |
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
Probab=81.51 E-value=21 Score=33.81 Aligned_cols=105 Identities=10% Similarity=0.121 Sum_probs=64.1
Q ss_pred ceecCCcchhHHHHHHHHHhcCC----CeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccC
Q 010874 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sGi----~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~G 194 (498)
++|.-|..+.|..+++.+.+... -+|+|+-+...+...+.+. .+... . ..+.++.... .|
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~-~~~~~---~--~~v~~i~~~~----------~~ 68 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQ-EYAAK---D--PRIRLIDNPK----------RI 68 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHH-HHHhc---C--CeEEEEeCCC----------CC
Confidence 45666665678888898877644 3777776655555545553 22111 1 2255554221 25
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCCeE
Q 010874 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADIT 245 (498)
Q Consensus 195 ta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~ad~t 245 (498)
-+.++..+.... ..+.++++.+|.+...+ +..+++.+.+.+.++.
T Consensus 69 ~~~a~N~g~~~a------~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v 114 (249)
T cd02525 69 QSAGLNIGIRNS------RGDIIIRVDAHAVYPKDYILELVEALKRTGADNV 114 (249)
T ss_pred chHHHHHHHHHh------CCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEE
Confidence 566777665543 35889999999987766 6777776655555443
|
Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. |
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
Probab=80.38 E-value=20 Score=32.20 Aligned_cols=107 Identities=14% Similarity=0.068 Sum_probs=63.8
Q ss_pred eecCCcchhHHHHHHHHHhc----CCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccCh
Q 010874 120 VPVAGCYRLIDIPMSNCINS----GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (498)
Q Consensus 120 lpI~G~~pLId~~L~~l~~s----Gi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gt 195 (498)
+|..+....|..+|+.+.+. ...+|+|+-....+...+.+. .+.. ++. .+.++...+. .|-
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~-~~~~---~~~--~~~~~~~~~n---------~G~ 67 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIAR-ELAA---RVP--RVRVIRLSRN---------FGK 67 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHH-HHHH---hCC--CeEEEEccCC---------CCc
Confidence 45556545677788887775 356777776554444433332 2211 121 1344443332 478
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCCeEEE
Q 010874 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (498)
Q Consensus 196 a~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~ad~tv~ 247 (498)
+.++..+..... .+.++++.+|.....+ +..+++...+.+.++.+.
T Consensus 68 ~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 68 GAAVRAGFKAAR------GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred cHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 888887765542 4889999999877666 677777655666655443
|
DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 498 | ||||
| 1yp2_A | 451 | Crystal Structure Of Potato Tuber Adp-Glucose Pyrop | 1e-125 | ||
| 3brk_X | 420 | Crystal Structure Of Adp-Glucose Pyrophosphorylase | 1e-45 | ||
| 1lvw_A | 295 | Crystal Structure Of Glucose-1-phosphate Thymidylyl | 2e-06 | ||
| 1fxo_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 4e-06 | ||
| 4arw_A | 302 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 5e-06 | ||
| 4b2x_A | 303 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 5e-06 | ||
| 1iim_A | 292 | Thymidylyltransferase Complexed With Ttp Length = 2 | 1e-05 | ||
| 1mp5_A | 292 | Y177f Variant Of S. Enterica Rmla Length = 292 | 1e-05 | ||
| 1mp4_A | 292 | W224h Variant Of S. Enterica Rmla Length = 292 | 1e-05 | ||
| 1mp3_A | 292 | L89t Variant Of S. Enterica Rmla Length = 292 | 2e-05 | ||
| 1g23_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 2e-05 | ||
| 3pkp_A | 292 | Q83s Variant Of S. Enterica Rmla With Datp Length = | 3e-05 | ||
| 1h5s_D | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 5e-05 | ||
| 1h5r_B | 293 | Thymidylyltransferase Complexed With Thimidine And | 6e-05 | ||
| 1h5t_A | 293 | Thymidylyltransferase Complexed With Thymidylyldiph | 6e-05 | ||
| 1h5s_A | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 7e-05 | ||
| 3pkq_A | 292 | Q83d Variant Of S. Enterica Rmla With Dgtp Length = | 7e-05 |
| >pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose Pyrophosphorylase Length = 451 | Back alignment and structure |
|
| >pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From Agrobacterium Tumefaciens Length = 420 | Back alignment and structure |
|
| >pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295 | Back alignment and structure |
|
| >pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Tmp Complex. Length = 293 | Back alignment and structure |
|
| >pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 302 | Back alignment and structure |
|
| >pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 303 | Back alignment and structure |
|
| >pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp Length = 292 | Back alignment and structure |
|
| >pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Glucose-1-Phosphate Complex. Length = 293 | Back alignment and structure |
|
| >pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp Length = 292 | Back alignment and structure |
|
| >pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
| >pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And Glucose- 1-Phospate Length = 293 | Back alignment and structure |
|
| >pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With Thymidylyldiphosphate- Glucose Length = 293 | Back alignment and structure |
|
| >pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
| >pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 498 | |||
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 0.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 0.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 2e-18 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 8e-17 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 3e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 1e-06 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 7e-06 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 5e-05 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 6e-04 |
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 | Back alignment and structure |
|---|
Score = 645 bits (1667), Expect = 0.0
Identities = 219/423 (51%), Positives = 303/423 (71%), Gaps = 11/423 (2%)
Query: 78 MTLAPPRLERRRVDP---KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMS 134
M ++ + + +DP ++V IILGGGAGT+L+PLT + A PAVP+ YRLIDIP+S
Sbjct: 1 MAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVS 60
Query: 135 NCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193
NC+NS I+KI+VLTQFNSASLNRH++R Y G +GFVEVLAA Q+P +WFQ
Sbjct: 61 NCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPDWFQ 118
Query: 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253
GTADAVRQ+ W+FE+ + IL GDHLYRMDY FIQ+H + DADIT++ + E
Sbjct: 119 GTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDE 175
Query: 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVF 313
RA+ +GL+KID GRI +FAEKP G L+AM+VDT++LG + A++ P++ASMG+YV
Sbjct: 176 KRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVI 235
Query: 314 KKDVLFKLLRWRYPTSNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372
KDV+ LLR ++P +NDFGSE+IP A + VQAY++ YWEDIGTI++FY AN+ +T
Sbjct: 236 SKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 295
Query: 373 K-ESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRL 431
K P F FYD P YT PR+LPP+K+ + + D++I GC ++ C + HS+VG RS +
Sbjct: 296 KKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCI 355
Query: 432 DYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 491
G ++D++++GADYY+T+++ L A+G VPIG+G+N I+ IIDKN +IG +V I+
Sbjct: 356 SEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKII 415
Query: 492 NKD 494
NKD
Sbjct: 416 NKD 418
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 535 bits (1381), Expect = 0.0
Identities = 127/429 (29%), Positives = 200/429 (46%), Gaps = 63/429 (14%)
Query: 85 LERRRVDP--KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGIN 142
+ +RV P ++ A +L GG G++L LT R A PAV G R+ID +SN +NSGI
Sbjct: 1 MSEKRVQPLARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIR 60
Query: 143 KIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQ 201
+I V TQ+ + SL RH+ R + F + ++L A+Q E+ W++GTADAV Q
Sbjct: 61 RIGVATQYKAHSLIRHLQRGWDFFRP--ERNESFDILPASQRVSET--QWYEGTADAVYQ 116
Query: 202 FTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGL 261
+ E E + IL GDH+Y+MDY +Q HVD AD+TI C V A+ +G+
Sbjct: 117 NIDIIEPY---APEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGV 173
Query: 262 VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321
+ ++ I F EKP+ + +ASMG+YVF L +
Sbjct: 174 MHVNEKDEIIDFIEKPADPP--------------GIPGNEGFALASMGIYVFHTKFLMEA 219
Query: 322 LRWRYP---TSNDFGSEIIPAAIMEHDVQAYIFRD-----------YWEDIGTIKSFYEA 367
+R +S DFG +IIP + A+ F D YW D+GTI ++++A
Sbjct: 220 VRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQA 279
Query: 368 NMALTKESPAFHFYDPKTPFYTSPRFLPPTKI------DNCRIKDAIISHGCFLRECTVE 421
N+ LT P YD P +T PP K +++S C + +
Sbjct: 280 NIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIISGAALN 339
Query: 422 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKN 481
S++ R + L++ V+L + + +GR+ ++ N +ID
Sbjct: 340 RSLLFTGVRANSYSRLENAVVLPS-------------------VKIGRHAQLSNVVIDHG 380
Query: 482 VKIGKDVVI 490
V I + +++
Sbjct: 381 VVIPEGLIV 389
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 2e-18
Identities = 79/412 (19%), Positives = 135/412 (32%), Gaps = 99/412 (24%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYR-LIDIPMSNCINSGINKIFVLTQFNSASL 155
A IL G+G +L P+T VP+ + LI+ + GI I V+
Sbjct: 3 AFILAAGSGERLEPITHTRPKAFVPILS--KPLIEYQIEYLRKCGIRDITVIVS------ 54
Query: 156 NRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIE 215
+ YF V +GT A+ AK +
Sbjct: 55 --SKNKEYFEKK---LKEISIVTQKDD---------IKGTGAAILS-------AKFN--D 91
Query: 216 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASD---YGLVKIDNMGRIAQ 272
I+ GD + + IT+ A+ + S+ YG++ +DN +++
Sbjct: 92 EALIIYGDLF--------FSNEKEICNIITLKENAIIGVKVSNPKDYGVLVLDNQNNLSK 143
Query: 273 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR-----WR-- 325
EKP P + + G+Y D +F L R
Sbjct: 144 IIEKPEI---------------PPSN------LINAGIYKLNSD-IFTYLDKISISERGE 181
Query: 326 -YPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
T + I +H V+ + YW DIG + + N F
Sbjct: 182 LELT------DAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNL---VFSQNL 232
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV--EHSIVGERSRLDYGVELKDTVM 442
+ + I+ +DA I G ++ + S +G S L L +
Sbjct: 233 GNVEDNVKIKGKVIIE----EDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNK 288
Query: 443 LGADYYQTESEI-ASLLAEG-KVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492
+GA E+ S++ EG K+P + + + +I ++V G +I N
Sbjct: 289 IGAS-----VEVKESVIMEGSKIP----HLSYVGDSVIAEDVNFGAGTLIAN 331
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 8e-17
Identities = 39/313 (12%), Positives = 85/313 (27%), Gaps = 69/313 (22%)
Query: 70 TSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLI 129
+ H + L P + V AIIL G GT+L PLT V V LI
Sbjct: 4 SHHHHHHSSGLVP---RGSHMKEIRVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLI 59
Query: 130 DIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGK 189
+ + GIN I ++ ++ + +G V
Sbjct: 60 EYQIEFLKEKGINDIIIIVG--------YLKEQFDYLKEKYGVRLVFNDKYADY------ 105
Query: 190 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 249
++ K + I ++L++ + ++ + R ++
Sbjct: 106 ----NNFYSLYL-------VKEELANSYVIDADNYLFK----NMFRNDLTRSTYFSVY-- 148
Query: 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMG 309
++ + + ++ G
Sbjct: 149 ---REDCTNEWFLVYGDDYKVQDIIVDSKAGR------------------------ILSG 181
Query: 310 VYVFKKDVLFKLLR------WRYPTSNDFGSEIIPAAIMEHDVQAYIF-RDYWEDIGTIK 362
V + K++ + + ++ I E DV + +I +++
Sbjct: 182 VSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQ 241
Query: 363 SFYEANMALTKES 375
+ + L E+
Sbjct: 242 DYRKLEEILKNEN 254
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 3e-15
Identities = 40/276 (14%), Positives = 82/276 (29%), Gaps = 71/276 (25%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGC---YRLIDIPMSNCINSGINKIFVLTQFNSA 153
A+IL G GT+L + P V V GC R + + ++ +++ ++ +
Sbjct: 21 AVILAAGLGTRLGGVP----KPLVRVGGCEIILRTMKL-----LSPHVSEFIIVASRYA- 70
Query: 154 SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRN 213
+ D E G ++ AKN
Sbjct: 71 ----DDIDAFLK------DKGFNYKIVRHDRPEKG------NGYSLLV-------AKNHV 107
Query: 214 IENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQF 273
+ + GDH+Y FI+ V + I + + +++++ GR+A+
Sbjct: 108 EDRFILTMGDHVYSQQ---FIEKAVRGEGVIADREPRFVDI--GEATKIRVED-GRVAKI 161
Query: 274 AEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333
+ + G +V + F+ D
Sbjct: 162 GKDLREFDC-----------------------VDTGFFVLDDSI-FEHA----EKLRDRE 193
Query: 334 SEIIPAAIMEHDVQA-YIFRDYWEDIGTIKSFYEAN 368
+ + + Y+ + W D+ T + AN
Sbjct: 194 EIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRAN 229
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 2e-07
Identities = 63/455 (13%), Positives = 120/455 (26%), Gaps = 169/455 (37%)
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFV---------------LTQFNSASLNRHIARTY-- 163
V+G RL +S + + FV T+ S+ +
Sbjct: 60 AVSGTLRLFWTLLSK--QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 164 --FGNGTNFGDGFV----EVLAATQ-----TPGE---------SGKNWFQGTADAVRQFT 203
+ + F V L Q P + SGK W D +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSYK 175
Query: 204 ----------WVFEDAKNRN-----IENVAILCGDHLYRMDYMDFIQSHVDRDADITISC 248
W+ + KN N +E + L Y++D S D ++I +
Sbjct: 176 VQCKMDFKIFWL--NLKNCNSPETVLEMLQKLL----YQIDPNW--TSRSDHSSNIKLRI 227
Query: 249 AAVGES-----RASDY--GLVKIDNM------------------GRIAQFAEKPSGANLK 283
++ ++ Y L+ + N+ R Q + S A
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 284 AMQVDTSLLGFSPQEAR----KC----------------PYVASMGVYVFKKDVLFKLLR 323
+ +D + +P E + K P S+ + +D L
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDN 346
Query: 324 WRYPTSNDFGSEIIPAAI---MEHDVQAY-----IFRD-----------YWEDIGTIKSF 364
W++ + + II +++ + + +F W D+
Sbjct: 347 WKHVNCDKL-TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV----IK 401
Query: 365 YEANMALTKESPAFHFY-----DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE-C 418
+ + + K H Y PK I +L
Sbjct: 402 SDVMVVVNK----LHKYSLVEKQPKESTI--------------SI------PSIYLELKV 437
Query: 419 TVE-----HSIVGERSRLDYGVELKDTVMLGADYY 448
+E H + + + + D + D Y
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 31/176 (17%), Positives = 56/176 (31%), Gaps = 30/176 (17%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+I+ GG GT++ + P + + G LID +S + S +N IF+ T N+
Sbjct: 3 ALIMAGGKGTRMGGVE----KPLIKLCG-RCLIDYVVSPLLKSKVNNIFIATSPNTPKT- 56
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ Y + + + T G +G + + + E
Sbjct: 57 ----KEYINSAYKDY----KNIVVIDTSG-------KGYIEDLNE-------CIGYFSEP 94
Query: 217 VAILCGD--HLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 270
++ D +L + A A Y ID G +
Sbjct: 95 FLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPKEKYPNPSIDFNGLV 150
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Length = 303 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 7e-06
Identities = 44/301 (14%), Positives = 80/301 (26%), Gaps = 57/301 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPA--VPVAGCYR-LIDIPMSNCINSGINKIFVLT-QFNS 152
+L G G+ R + + ++D + + I +G ++ +
Sbjct: 8 LFVLAAGMGS-------RYGSLKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRHSFE 60
Query: 153 ASLNRHIARTYFGNGTNFGDGFVE-----VLAATQTPGESGKNWFQGTADAVRQFTWVFE 207
I Y G V + P K W GT AV
Sbjct: 61 KEFREKILTKYEGRIP---VELVFQELDRLPEGFSCPEGREKPW--GTNHAVLM------ 109
Query: 208 DAKNRNIENVAILCGDHLY----RMDYMDFIQSHVDRDADITISCAAVG----ESRASDY 259
++ E A++ D Y + + + + + VG ES
Sbjct: 110 -GRDAIREPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSR 168
Query: 260 GLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF 319
G+ ++D + E+ G A P SM ++ F D F
Sbjct: 169 GVCQVDEKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAP--VSMNMWGFTPDY-F 225
Query: 320 KLLRWRYP-----TSNDFGSEI-IPAAIMEH------DVQAYIFRDYW------EDIGTI 361
+ + SE IP + + V+ W +D +
Sbjct: 226 DYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGV 285
Query: 362 K 362
Sbjct: 286 V 286
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 5e-05
Identities = 86/469 (18%), Positives = 150/469 (31%), Gaps = 128/469 (27%)
Query: 92 PKNVAAIILGGGAGTKLFPLTLRAATPAV--PVAGCYR-LIDIPMSNCINSGINKIFVLT 148
+ AIIL G GT+ +++ P V VAG +++ + K +
Sbjct: 9 HHSNFAIILAAGKGTR-----MKSDLPKVLHKVAG--ISMLEHVFRSVGAIQPEKTVTVV 61
Query: 149 QFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ-GTADAVRQFTWVFE 207
+ + T F TQ+ Q GT AV + E
Sbjct: 62 GHKAELV-----EEVLAGQTEF---------VTQSE--------QLGTGHAVMMTEPILE 99
Query: 208 DAKNRNIENVAILCGDH-LYRMDYM-DFIQSHVDRDADITISCAAVGESRASDYGLVKID 265
+ ++ GD L + + + I H++ TI A YG + +
Sbjct: 100 GLS----GHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDN--PFGYGRIVRN 153
Query: 266 NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325
+ + + E Q D + E ++ + + G YVF + LF+ L+
Sbjct: 154 DNAEVLRIVE----------QKDA-----TDFE-KQIKEINT-GTYVFDNERLFEALK-N 195
Query: 326 YPTSNDFG----SEIIPAAIME-HDVQAYIFRDYWEDIG--TIKSFYEANMALTKESPAF 378
T+N G +++I V AY +D+ E +G + A + +
Sbjct: 196 INTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHK 255
Query: 379 H------FYDPKTPFYTSPR--------------FLPPTKID-------NCRIKDAIISH 411
H F +P+ Y TKI + D+ I
Sbjct: 256 HMVNGVSFVNPEA-TYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGA 314
Query: 412 GCFLRECTVEHSIVGER------SRLDYGVELKDTVMLGADYYQTESEI-ASLLAEG-KV 463
G + +E S V + + + L V +G ++ E+ S + E K
Sbjct: 315 GAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIG-NFV----EVKGSSIGENTKA 369
Query: 464 P----IG---VGRNTKI-----------RN---CIIDKNVKIGKDVVIV 491
IG VG N +N +I NV +G + I+
Sbjct: 370 GHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTII 418
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 90/488 (18%), Positives = 147/488 (30%), Gaps = 131/488 (26%)
Query: 73 HPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV--PVAGCYR-LI 129
H + MT P + A ++L G GT+ +R+ TP V +AG R ++
Sbjct: 2 HHHHHMT-----------FPGDTAVLVLAAGPGTR-----MRSDTPKVLHTLAG--RSML 43
Query: 130 DIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGK 189
+ ++ V+ + + + G + A Q
Sbjct: 44 SHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRT-------IDVALQDR----- 91
Query: 190 NWFQ-GTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDYM-DFIQSHVDRDADITI 246
GT AV D NV + GD L D + D I +H A +T+
Sbjct: 92 ---PLGTGHAVLCGLSALPDDYA---GNVVVTSGDTPLLDADTLADLIATHRAVSAAVTV 145
Query: 247 SCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVA 306
+ + YG + + E Q D +P + R+ V
Sbjct: 146 LTTTLDD--PFGYGRILRTQDHEVMAIVE----------QTDA-----TPSQ-REIREVN 187
Query: 307 SMGVYVFKKDVLFKLLRWRYPTSNDFG----SEIIPAAIME-HDVQAYIFRDYWEDIG-- 359
+ GVY F L L R ++N +++I + V A D G
Sbjct: 188 A-GVYAFDIAALRSALS-RLSSNNAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVN 245
Query: 360 TIKSFYEANMALTKESPAFH------FYDPKTPFYTSPR--------------FLPPTKI 399
E L + A H DP T + L T+I
Sbjct: 246 NRVQLAELASELNRRVVAAHQLAGVTVVDPAT-TWIDVDVTIGRDTVIHPGTQLLGRTQI 304
Query: 400 D-------NCRIKDAIISHGCFLRECTVEHSIVGER------SRLDYGVELKDTVMLGAD 446
+ + D + G + S +G+ + L G L LG
Sbjct: 305 GGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLG-A 363
Query: 447 YYQTESEI-ASLLAEG-KVP----IG---VGRNTKI--------------RNCIIDKNVK 483
+ E+ S + G KVP +G +G + I R + +V+
Sbjct: 364 FV----EVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVR 419
Query: 484 IGKDVVIV 491
G D + V
Sbjct: 420 TGSDTMFV 427
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 498 | |||
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 100.0 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 100.0 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 100.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 100.0 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 100.0 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 100.0 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 100.0 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 100.0 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 100.0 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 100.0 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 100.0 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 100.0 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 100.0 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 100.0 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 100.0 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 100.0 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 99.98 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 99.97 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.96 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.96 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 99.94 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.94 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.92 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.92 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.9 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 99.9 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 99.89 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.88 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.87 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 99.85 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.84 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 99.83 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.82 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 99.82 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 99.81 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 99.81 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 99.8 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 99.77 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 99.76 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 99.74 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 99.73 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 99.72 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 99.71 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.68 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.66 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.66 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 99.65 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 99.62 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 99.61 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.58 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 99.57 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 99.47 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 99.42 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.42 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 99.41 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 99.41 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 99.39 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.3 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.12 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.1 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 98.98 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 98.98 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 98.97 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 98.96 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 98.96 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 98.94 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 98.93 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 98.91 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 98.91 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 98.9 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 98.9 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 98.89 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 98.89 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 98.89 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 98.88 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 98.87 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 98.86 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.86 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 98.85 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 98.85 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 98.84 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 98.79 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 98.78 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.78 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.78 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 98.78 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.77 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 98.76 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.75 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.74 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.74 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 98.73 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 98.72 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.71 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.7 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 98.7 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 98.7 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.68 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 98.68 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 98.67 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.67 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 98.67 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 98.67 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.65 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 98.64 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.63 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 98.62 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.62 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 98.61 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 98.6 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.59 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.59 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.59 | |
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 98.58 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.58 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 98.58 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 98.57 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.57 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 98.57 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.56 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 98.55 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 98.54 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 98.54 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 98.53 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 98.52 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 98.52 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 98.5 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.5 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.5 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.48 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 98.48 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.45 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.43 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 98.42 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 98.41 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.4 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 98.4 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.37 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.31 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.3 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.3 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.28 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.25 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 98.24 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.21 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.2 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.2 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.13 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.09 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.09 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.08 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.06 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.03 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 97.98 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 97.98 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 97.96 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 97.95 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 97.94 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 97.94 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 97.85 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 97.58 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 97.52 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 97.52 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 97.5 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 97.45 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 97.34 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 97.34 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 97.09 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 96.85 | |
| 2i5e_A | 211 | Hypothetical protein MM_2497; APC86122, methanosar | 96.83 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 81.87 |
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-56 Score=471.71 Aligned_cols=401 Identities=54% Similarity=1.002 Sum_probs=327.0
Q ss_pred CCCCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCC-
Q 010874 90 VDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGT- 168 (498)
Q Consensus 90 ~~~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~- 168 (498)
-+|++|+|||||||.||||+|||..+||+|+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.| +...
T Consensus 16 ~~~~~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~-~~~~~ 94 (451)
T 1yp2_A 16 DASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY-ASNMG 94 (451)
T ss_dssp CHHHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHC-C----
T ss_pred ccccceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHhhhh-hcccc
Confidence 35778999999999999999999999999999999889999999999999999999999999999999997543 1110
Q ss_pred cC-CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEE
Q 010874 169 NF-GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITIS 247 (498)
Q Consensus 169 ~~-~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~ 247 (498)
++ ..+.++++...|.+. .+.|.+||+++|+.+++++++ ...++|+|++||++++.+|.++++.|+++++++|++
T Consensus 95 ~~~~~~~v~i~~~~~~~~--~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~ 169 (451)
T 1yp2_A 95 GYKNEGFVEVLAAQQSPE--NPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVA 169 (451)
T ss_dssp ----CCEEEEEESCSSTT--SCCCCCSHHHHHHHTHHHHTT---SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEE
T ss_pred cccccCcEEEeccccccc--ccccccCcHHHHHHHHHHHHh---cCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEE
Confidence 01 123466665444321 235678999999999988752 124789999999999999999999999999999999
Q ss_pred EEecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC
Q 010874 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (498)
Q Consensus 248 ~~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~ 327 (498)
+.+.+.+.+++||++.+|++|+|+.|.|||..+....++++.++++-.+......++++++|+|+|++++|.++++..++
T Consensus 170 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~ 249 (451)
T 1yp2_A 170 ALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFP 249 (451)
T ss_dssp EEEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCT
T ss_pred EEEcChhhcccCCEEEECCCCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcc
Confidence 88875333568999999989999999999986544445566666644332222235789999999999999777776555
Q ss_pred CCCchhhhhHHHHhhc-CceEEEEEcceEeecCCHHHHHHHHHHhhccC-CCccccCCCCCCCCCCccCCCeEecCeeee
Q 010874 328 TSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRFLPPTKIDNCRIK 405 (498)
Q Consensus 328 ~~~df~~dii~~~i~~-~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~-~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~ 405 (498)
...+|..++++.++++ .++++|.+++||.||||+++|++|++.++++. +...++++.+.+++++.++|+++|.++.|.
T Consensus 250 ~~~~~~~~~l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~ 329 (451)
T 1yp2_A 250 GANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVT 329 (451)
T ss_dssp TCCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEEEEEEEE
T ss_pred cccchHhhHHHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEEcceEEe
Confidence 5567778899998887 78999999999999999999999999999877 677788999999999999999999889999
Q ss_pred ceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEEC
Q 010874 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (498)
Q Consensus 406 ~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig 485 (498)
+++||+||+|+++.|.+|+||++|.||++|+|.++++++++.++...+.......|...+.||++++|.+|+||+++.||
T Consensus 330 ~~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG 409 (451)
T 1yp2_A 330 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIG 409 (451)
T ss_dssp EEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEEC
T ss_pred CeEECCCCEEcceEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEEC
Confidence 99999999999888999999999999999999999999987666655555555556544799999999999999999999
Q ss_pred CCcEEeCCCCC
Q 010874 486 KDVVIVNKDES 496 (498)
Q Consensus 486 ~~~~i~~~~~v 496 (498)
+|++|.+.+++
T Consensus 410 ~~~~i~~~~~~ 420 (451)
T 1yp2_A 410 DNVKIINKDNV 420 (451)
T ss_dssp TTCEECCSSCC
T ss_pred CCCEEeCCccc
Confidence 99999998775
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-52 Score=440.41 Aligned_cols=363 Identities=34% Similarity=0.569 Sum_probs=297.5
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
|++|+|||||||.||||+|||..+||+|+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.| +....+.
T Consensus 10 m~~~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~-~~~~~~~ 88 (420)
T 3brk_X 10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGW-DFFRPER 88 (420)
T ss_dssp GGGEEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHS-CCCCGGG
T ss_pred hhceEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhhh-ccccccc
Confidence 557999999999999999999999999999999978999999999999999999999999999999986543 2100011
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEec
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
...+.++...+.. ....|+.||+++|+.+++++++. ..++|++++||+++..++.++++.|++.++++|+++.+.
T Consensus 89 ~~~v~i~~~~~~~--~~~~~~~Gt~~al~~a~~~l~~~---~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~ 163 (420)
T 3brk_X 89 NESFDILPASQRV--SETQWYEGTADAVYQNIDIIEPY---APEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEV 163 (420)
T ss_dssp TCEEEEECCC---------CCCCHHHHHHTTHHHHHHH---CCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEE
T ss_pred cCCEEEeCccccc--cCCccccCCHHHHHHHHHHHHhc---CCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeec
Confidence 1236666543320 01246689999999999888531 247899999999999999999999999999999998887
Q ss_pred CCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC---C
Q 010874 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 328 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~---~ 328 (498)
+.+.++.||++.+|++|+|..|.|||..+... +. ...++++++|+|+|++++|.++++...+ .
T Consensus 164 ~~~~~~~~g~v~~d~~g~v~~~~ekp~~~~~~--~~------------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~ 229 (420)
T 3brk_X 164 PRMEATGFGVMHVNEKDEIIDFIEKPADPPGI--PG------------NEGFALASMGIYVFHTKFLMEAVRRDAADPTS 229 (420)
T ss_dssp ETTGGGGSEEEEECTTSBEEEEEESCSSCCCB--TT------------BTTEEEEEEEEEEEEHHHHHHHHTSSCCC---
T ss_pred CccccCcccEEEECCCCcEEEeEeCCCccccc--cc------------cccceEEeeeeEEEeHHHHHHHHHHhcccCCc
Confidence 54446689999999899999999998643210 00 0124789999999999998777665332 1
Q ss_pred CCchhhhhHHHHhhcCceEEEEE-----------cceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCe
Q 010874 329 SNDFGSEIIPAAIMEHDVQAYIF-----------RDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPT 397 (498)
Q Consensus 329 ~~df~~dii~~~i~~~~I~~~~~-----------~~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~~~ 397 (498)
..+|..++++.+++++++++|.+ ++||.||+|+++|++|++.++++++...++.+.+++++.+.+.|++
T Consensus 230 ~~~~~~d~l~~li~~g~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~ 309 (420)
T 3brk_X 230 SRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPA 309 (420)
T ss_dssp -------CTTHHHHHSCEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCCCCCCCCCCCC
T ss_pred cccchHHHHHHHhhhCcEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchhhcCCCCCceeeccccCCCc
Confidence 34567789999998889999999 8899999999999999999999887777778888999999999999
Q ss_pred Eec------CeeeeceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCc
Q 010874 398 KID------NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (498)
Q Consensus 398 ~i~------~~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~ 471 (498)
++. ++.+.++.||++|+|.++.|.||+||++|+||++|.|.+|+|+++ +.||++|
T Consensus 310 ~i~~~~~~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~-------------------~~i~~~~ 370 (420)
T 3brk_X 310 KFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPS-------------------VKIGRHA 370 (420)
T ss_dssp EEECBCSSCBCEEESCEECSSCEEESCEEESCEECTTCEECTTCEEEEEEECTT-------------------CEECTTC
T ss_pred EEecccccCCcEecCCEECCCCEEcCCEEeCcEEcCCCEECCCCEEcceEEcCC-------------------CEECCCC
Confidence 995 578889999999999888999999999999999999999999998 9999999
Q ss_pred EEeeeEECCCCEECCCcEEeCC
Q 010874 472 KIRNCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 472 ~i~~~iI~~~~~Ig~~~~i~~~ 493 (498)
+|.+|+||+++.||++++|.+.
T Consensus 371 ~i~~~~ig~~~~i~~~~~i~~~ 392 (420)
T 3brk_X 371 QLSNVVIDHGVVIPEGLIVGED 392 (420)
T ss_dssp EEEEEEECTTCEECTTCEESSC
T ss_pred EEeceEECCCCEECCCCEEeCC
Confidence 9999999999999999999864
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=372.40 Aligned_cols=362 Identities=18% Similarity=0.200 Sum_probs=245.6
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
.++.+||||||.||||+|+| ||||+||+|+ |||+|+|++|.++|+++|+|+++|+.+++.+|+.+.. ..++
T Consensus 11 ~~~~vvILAaG~GtRm~~~~---pK~l~pv~gk-p~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~----~~~~- 81 (501)
T 3st8_A 11 GDTAVLVLAAGPGTRMRSDT---PKVLHTLAGR-SMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELA----DTLG- 81 (501)
T ss_dssp -CEEEEEEECSCCGGGCCSS---CGGGCEETTE-EHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHH----HHHT-
T ss_pred CCceEEEECCcCcccCCCCC---CHHHeEECCh-hHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHH----HhcC-
Confidence 55789999999999999976 9999999999 9999999999999999999999999999999996421 0122
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-ee-cCHHHHHHHHHHcCCCeEEEEEe
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YR-MDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l-~~-~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
..++++. |. +++|||+||+++++++.+ ...+++|+++||.. .. ..+.++++.|++.++++|+++.+
T Consensus 82 ~~i~~~~--q~-------~~lGTa~Av~~a~~~l~~---~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~ 149 (501)
T 3st8_A 82 RTIDVAL--QD-------RPLGTGHAVLCGLSALPD---DYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTT 149 (501)
T ss_dssp SCCEEEE--CS-------SCCCHHHHHHHHHTTSCT---TCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CcEEEEE--cC-------CCCCcHHHHHHHHHHhcc---ccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeec
Confidence 1244432 32 247999999999988752 23468999999983 33 45899999999999999999999
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC---
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--- 327 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~--- 327 (498)
+++ ++.||.+..|++|+|..|.|||..+..+ ...+++++|+|+|++++|..++.....
T Consensus 150 ~~d--p~~yG~i~~~~~g~v~~ivEk~~~~~~~-----------------~~i~~in~Giy~f~~~~l~~~l~~l~~~n~ 210 (501)
T 3st8_A 150 LDD--PFGYGRILRTQDHEVMAIVEQTDATPSQ-----------------REIREVNAGVYAFDIAALRSALSRLSSNNA 210 (501)
T ss_dssp CSC--CTTSCEEEECTTCCEEEEECGGGCCHHH-----------------HHCCEEEEEEEEEEHHHHHHHHTTCCCCST
T ss_pred cCC--chhccccccccceeEEeeccccCCChhh-----------------ccceeeeceeeeecchhHHHhhhhhccccc
Confidence 887 7789999999999999999997643211 124789999999999999988775432
Q ss_pred CCCchhhhhHHHHhhc-CceEEEEEcceEeec--CCHHHHHHHHHHhhcc-------------CCCccccCCCCCCCCCC
Q 010874 328 TSNDFGSEIIPAAIME-HDVQAYIFRDYWEDI--GTIKSFYEANMALTKE-------------SPAFHFYDPKTPFYTSP 391 (498)
Q Consensus 328 ~~~df~~dii~~~i~~-~~I~~~~~~~~w~dI--gt~~dy~~An~~ll~~-------------~~~~~~~~~~~~i~~~~ 391 (498)
..+.|+++++..+... ..+.++..+++|... ++...+.++...+..+ .|...++++...+...+
T Consensus 211 ~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~IG~dv 290 (501)
T 3st8_A 211 QQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDT 290 (501)
T ss_dssp TCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCEECTTC
T ss_pred ccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhhhhhhhcccCceeeeeccccccCceEECCcc
Confidence 2455778888877765 567777777666544 4555555544433221 12222233334444444
Q ss_pred ccCCCeEecC-------------eeeeceEEcCCCEECceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-HH
Q 010874 392 RFLPPTKIDN-------------CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-AS 456 (498)
Q Consensus 392 ~i~~~~~i~~-------------~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~s 456 (498)
.|.+++.+.+ +.+.++.|+.++.+..+.+..+.+|+++.|+++++|. ++++.++..++.++++ ++
T Consensus 291 ~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik~s 370 (501)
T 3st8_A 291 VIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNS 370 (501)
T ss_dssp EECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEETEEEESC
T ss_pred eecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCCeEEEccc
Confidence 4444444321 2222233333322222222333333444444444432 2222333333333333 33
Q ss_pred hhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCCCCC
Q 010874 457 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDESP 497 (498)
Q Consensus 457 ~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~ 497 (498)
.+++| ++|++.++|++|+||+||.||+|+++.|.||+.
T Consensus 371 ~Ig~g---skI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~ 408 (501)
T 3st8_A 371 TIGTG---TKVPHLTYVGDADIGEYSNIGASSVFVNYDGTS 408 (501)
T ss_dssp EECTT---CEEEESCEEESEEECSSCEECTTCEEECBCSSS
T ss_pred eecCC---cEEeccceecCceEcCCCEECCCEEEEcccCCc
Confidence 33444 899999999999999999999999999998863
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=358.37 Aligned_cols=312 Identities=17% Similarity=0.227 Sum_probs=227.0
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
-+|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+++. . +
T Consensus 12 ~~~vIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~~-----~----~--- 75 (468)
T 1hm9_A 12 NFAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLA-----G----Q--- 75 (468)
T ss_dssp EEEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSSS-----S----S---
T ss_pred CcEEEEcCCCCccCCC---CCCcEeeEECCc-cHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHhC-----C----C---
Confidence 4799999999999985 789999999999 9999999999999999999999998777655442 1 1
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
+.++... +..|++++|+.++.++++ ..++||+++||+ +...++.++++.|++.++++++++.+..
T Consensus 76 i~~v~~~---------~~~G~~~sl~~a~~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~ 142 (468)
T 1hm9_A 76 TEFVTQS---------EQLGTGHAVMMTEPILEG----LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETD 142 (468)
T ss_dssp SEEEECS---------SCCCHHHHHHTTHHHHTT----CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS
T ss_pred cEEEeCC---------ccCChHHHHHHHHHHhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccC
Confidence 3343321 136999999999888741 247899999999 5677899999999998999999888876
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC---C
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~---~ 329 (498)
+ +..||.+..|++|+|..|.|||..... ....+++++|+|+|+++.|.++++...+. .
T Consensus 143 ~--~~~~g~v~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~ 203 (468)
T 1hm9_A 143 N--PFGYGRIVRNDNAEVLRIVEQKDATDF-----------------EKQIKEINTGTYVFDNERLFEALKNINTNNAQG 203 (468)
T ss_dssp C--CTTSCEEEECTTCCEEEEECTTTCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTC
T ss_pred C--CCceeEEEECCCCCEEEEEECCCCChH-----------------HhcCeEEEEEEEEEEHHHHHHHHHhhccccCCC
Confidence 5 567999999989999999998752110 01247899999999999776666543322 2
Q ss_pred CchhhhhHHHHhhc-CceEEEEEcceEee--cCCHHHHHHHHHHhhccC------CCcc-------ccCCCCCCCCCCc-
Q 010874 330 NDFGSEIIPAAIME-HDVQAYIFRDYWED--IGTIKSFYEANMALTKES------PAFH-------FYDPKTPFYTSPR- 392 (498)
Q Consensus 330 ~df~~dii~~~i~~-~~I~~~~~~~~w~d--Igt~~dy~~An~~ll~~~------~~~~-------~~~~~~~i~~~~~- 392 (498)
..+.+++++.+++. .++++|.++++|.+ |+|++||..|+..+..+. +... ++++...+..++.
T Consensus 204 ~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i 283 (468)
T 1hm9_A 204 EYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQI 283 (468)
T ss_dssp SCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGCEECTTCEECTTCEE
T ss_pred eEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCeeEECCCcEECCCCEE
Confidence 34568999988876 58999999999977 559999999998765431 1111 1222222222222
Q ss_pred -----------cCCCeEe-cCeeeeceEEcCCCEECceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH
Q 010874 393 -----------FLPPTKI-DNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI 454 (498)
Q Consensus 393 -----------i~~~~~i-~~~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~ 454 (498)
+++++.| .++.|.++.||++|.|+++.|.+++||++|.||++|.|. +++|+++..++.++++
T Consensus 284 ~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i 358 (468)
T 1hm9_A 284 EANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEV 358 (468)
T ss_dssp CSSCEEESSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEE
T ss_pred CCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEEEEEEeccccCCCcEECCceEEecCcEECCccEECCCcEE
Confidence 2223333 134445666677777766667777888888888888887 6666666555555444
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=343.16 Aligned_cols=319 Identities=19% Similarity=0.301 Sum_probs=246.0
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|+|||||||.|+||+|||..+||+|+|++|+ |||+|++++|.++|+++|+|+++++ +.+|+.+.+. .
T Consensus 1 m~aiIlA~G~g~R~~plt~~~~K~ll~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~~---------~ 67 (401)
T 2ggo_A 1 MKAFILAAGSGERLEPITHTRPKAFVPILSK-PLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKLK---------E 67 (401)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHCT---------T
T ss_pred CeEEEEcCcCccccCcccCCCCcceeeECCE-eHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccCC---------c
Confidence 6899999999999999999999999999999 9999999999999999999999886 6677753210 1
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeee--cCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~--~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
+.++.... |..|++++++.+.. .++|+++.||+++. .++.++++ .+++++++.+.+
T Consensus 68 i~~~~~~~--------~~~g~~~~l~~~~~---------~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~~ 125 (401)
T 2ggo_A 68 ISIVTQKD--------DIKGTGAAILSAKF---------NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKVS 125 (401)
T ss_dssp CEEEECCT--------TCCBSTTTGGGCCC---------SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEECS
T ss_pred EEEEeCCC--------CCCChHHHHHHhcc---------CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEcC
Confidence 44443221 23689999877632 37899999999876 55777765 456788888876
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC--CC
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 330 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~--~~ 330 (498)
+ +..|+.+..+++|++..|.|||..+ .++++++|+|+|++++|.. ++...+. ..
T Consensus 126 ~--~~~~~~v~~~~~g~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~~~~-l~~~~~~~~~~ 181 (401)
T 2ggo_A 126 N--PKDYGVLVLDNQNNLSKIIEKPEIP---------------------PSNLINAGIYKLNSDIFTY-LDKISISERGE 181 (401)
T ss_dssp C--CSSSCEEEECTTSSEEEEECSCSSC---------------------SCSEEEEEEEEEETHHHHH-HHHSCCCSSSC
T ss_pred C--CcceeEEEECCCCeEEEEEECCCCC---------------------CCcEEEEEEEEEcHHHHHH-hhhcCcCCCCc
Confidence 5 4578999998889999999998643 2478999999999999865 4443221 12
Q ss_pred chhhhhHHHHhhc-CceEEEEEcceEeecCCHHHHHHHHHHhhccCCCc---cccCCCCCCCCCCccCCCeEe-cCeeee
Q 010874 331 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAF---HFYDPKTPFYTSPRFLPPTKI-DNCRIK 405 (498)
Q Consensus 331 df~~dii~~~i~~-~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~~---~~~~~~~~i~~~~~i~~~~~i-~~~~I~ 405 (498)
....++++.+ .. .++.++..+++|.||+||+||..|++.++++.... ..+++.+.+...+.+++++.| .++.|.
T Consensus 182 ~~~~~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~ 260 (401)
T 2ggo_A 182 LELTDAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIE 260 (401)
T ss_dssp BCHHHHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEE
T ss_pred eEHHHHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEe
Confidence 2246778777 44 68999999999999999999999999998765311 122333333334444444445 235553
Q ss_pred -ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCC
Q 010874 406 -DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (498)
Q Consensus 406 -~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~ 482 (498)
++.||++|.|+ ++.|. +++||++|.||++|.|.+++|+++ +.|++++.|.+|+||+++
T Consensus 261 ~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~Ig~~~ 321 (401)
T 2ggo_A 261 GPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEG-------------------SKIPHLSYVGDSVIAEDV 321 (401)
T ss_dssp SSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTT-------------------CEEEESCEEESCEECTTC
T ss_pred CCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCC-------------------cEECCCceEcceEECCCc
Confidence 68899999998 88886 799999999999999999999988 788888888888888888
Q ss_pred EECCCcEEeC
Q 010874 483 KIGKDVVIVN 492 (498)
Q Consensus 483 ~Ig~~~~i~~ 492 (498)
.||+++.|.+
T Consensus 322 ~Ig~~~~i~~ 331 (401)
T 2ggo_A 322 NFGAGTLIAN 331 (401)
T ss_dssp EECTTCEECC
T ss_pred EECCCcEEcC
Confidence 8888888874
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=343.90 Aligned_cols=349 Identities=15% Similarity=0.213 Sum_probs=235.1
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
++|.|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+++.+ ++
T Consensus 7 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~--------~~- 73 (459)
T 4fce_A 7 SSMSVVILAAGKGTRMYS---DLPKVLHPLAGK-PMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLAD--------PS- 73 (459)
T ss_dssp CCEEEEEEECCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-------------
T ss_pred CcceEEEECCCCCccCCC---CCCcccCeeCCe-eHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc--------CC-
Confidence 468999999999999997 789999999999 99999999999999999999999988777766641 11
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
+.++... +..|++++++.++.+++ ..++|++++||+ +...++.++++.|.+ .++++++.+
T Consensus 74 --~~~v~~~---------~~~g~~~~i~~~~~~~~-----~~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~ 135 (459)
T 4fce_A 74 --LNWVLQA---------EQLGTGHAMQQAAPHFA-----DDEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVK 135 (459)
T ss_dssp ---CEEECS---------SCCCHHHHHHHHGGGSC-----TTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEE
T ss_pred --cEEEeCC---------CCCCcHHHHHHHHHhcC-----CCCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEe
Confidence 3344321 13699999999986663 247999999999 556779999998864 567777777
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC---
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--- 327 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~--- 327 (498)
..+ +..|+.+..| +|+|..+.|||..... ....+++++|+|+|+++.|.++++...+
T Consensus 136 ~~~--~~~~g~v~~~-~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 195 (459)
T 4fce_A 136 LDN--PSGYGRIVRE-NGDVVGIVEHKDASDA-----------------QREINEINTGILVANGRDLKRWLSLLDNNNA 195 (459)
T ss_dssp CSC--CTTSCEEEEE-TTEEEEEECGGGCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHHTCCCCST
T ss_pred cCC--CCcccEEEeC-CCcEEEEEECCCCChH-----------------HhhccEEEEEEEEEEHHHHHHHHHHhCcccc
Confidence 665 5679998887 7999999998643210 0124789999999999988777765332
Q ss_pred CCCchhhhhHHHHhhc-CceEEEEEcceE--eecCCHHHHHHHHHHhhccC-------------CCccccCCCCCCCCCC
Q 010874 328 TSNDFGSEIIPAAIME-HDVQAYIFRDYW--EDIGTIKSFYEANMALTKES-------------PAFHFYDPKTPFYTSP 391 (498)
Q Consensus 328 ~~~df~~dii~~~i~~-~~I~~~~~~~~w--~dIgt~~dy~~An~~ll~~~-------------~~~~~~~~~~~i~~~~ 391 (498)
....+++++++.+++. .+++++..++|| .+|+||+||..|+..+..+. |...++++...+..++
T Consensus 196 ~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~ig~~~ 275 (459)
T 4fce_A 196 QGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDI 275 (459)
T ss_dssp TCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEECSSC
T ss_pred CCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEECCCc
Confidence 2344578889888776 689999999766 67999999999987664331 1111112222333333
Q ss_pred ccCCCeEec-------------CeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH-H
Q 010874 392 RFLPPTKID-------------NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-A 455 (498)
Q Consensus 392 ~i~~~~~i~-------------~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~-~ 455 (498)
.|.+.+.|. ++.|.++.||++|.|+ ++.|.+++||++|.||++|.|. +++++++..+++++++ .
T Consensus 276 ~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~ 355 (459)
T 4fce_A 276 TIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKK 355 (459)
T ss_dssp EECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEE
T ss_pred EECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEee
Confidence 344333331 2344456666666666 5666666666666666666665 5555555545444443 2
Q ss_pred HhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCCC
Q 010874 456 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495 (498)
Q Consensus 456 s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~ 495 (498)
+.++++ +.|++++++++++||+++.||+++++.+.++
T Consensus 356 ~~i~~~---~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ 392 (459)
T 4fce_A 356 ARLGKG---SKAGHLSYLGDAEIGAGVNIGAGTITCNYDG 392 (459)
T ss_dssp EEECTT---CEEEEEEEEEEEEECTTCEECTTCEEECBCS
T ss_pred eEEcCC---CEECCceEECCeEECCCCEECCCCEEecccc
Confidence 223333 3333333444455555555555555555443
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=337.46 Aligned_cols=310 Identities=18% Similarity=0.248 Sum_probs=218.5
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
+++|.|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+ ++
T Consensus 3 ~~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~--------~~ 70 (456)
T 2v0h_A 3 KKALSAVILAAGKGTRMYS---DLPKVLHTIAGK-PMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLAN--------EQ 70 (456)
T ss_dssp -CCEEEEEECCCCCGGGCS---SSCGGGSEETTE-EHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTT--------CC
T ss_pred CCcceEEEECCCCCcccCC---CCCccccEECCc-cHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhhc--------CC
Confidence 3568999999999999985 689999999999 99999999999999999999999987777666531 11
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
++++.... ..|++++++.++++++ ..++|++++||+ +...++.++++.|.+ +++++++.
T Consensus 71 ---~~~v~~~~---------~~g~~~~~~~~~~~~~-----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~ 131 (456)
T 2v0h_A 71 ---VNWVLQTE---------QLGTAHAVQQAAPFFK-----DNENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTV 131 (456)
T ss_dssp ---CEEEECSC---------CCCHHHHHHHHGGGCC-----TTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEE
T ss_pred ---cEEEeCCC---------CCCcHHHHHHHHHhcC-----CCCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEe
Confidence 34433211 3699999999876653 147899999999 556789999998865 57888877
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC-
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~- 328 (498)
+.++ +..|+.+..| +|++..|.|||..... ....+++++|+|+|+++.|.+.++...+.
T Consensus 132 ~~~~--~~~~g~v~~~-~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 191 (456)
T 2v0h_A 132 NLDN--PTGYGRIIRE-NGNVVAIVEQKDANAE-----------------QLNIKEVNTGVMVSDGASFKKWLARVGNNN 191 (456)
T ss_dssp ECSS--CTTSCEEEEE-TTEEEEEECTTTCCHH-----------------HHTCCEEEEEEEEEEHHHHHHHHTTCCCCS
T ss_pred ecCC--CCccceEEEc-CCcEEEEEECCCCChh-----------------HhcCcEEEEEEEEEEHHHHHHHHHHhcccc
Confidence 7765 5678988887 8899999998753210 01246899999999999877676543222
Q ss_pred --CCchhhhhHHHHhhc-CceEEEEEcce--EeecCCHHHHHHHHHHhhccC------CCccccCC-CCCCCCCCccCCC
Q 010874 329 --SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDP-KTPFYTSPRFLPP 396 (498)
Q Consensus 329 --~~df~~dii~~~i~~-~~I~~~~~~~~--w~dIgt~~dy~~An~~ll~~~------~~~~~~~~-~~~i~~~~~i~~~ 396 (498)
...+.+++++.++.. .+++++..+++ |.+|+||+||..|++.+..+. +...++++ ...+..++.++++
T Consensus 192 ~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~ 271 (456)
T 2v0h_A 192 AQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKD 271 (456)
T ss_dssp TTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEEEEEECSS
T ss_pred ccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcCceEECCC
Confidence 234568888887765 57999998765 569999999999998765431 11122222 1223333344444
Q ss_pred eEec-Ceeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchh
Q 010874 397 TKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTES 452 (498)
Q Consensus 397 ~~i~-~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~ 452 (498)
+.|. ++.|. +++||+||.|+ ++.|++++||++|.|+++|.|.+++|.++..+++.+
T Consensus 272 ~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~ 330 (456)
T 2v0h_A 272 VEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFS 330 (456)
T ss_dssp CEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSE
T ss_pred CEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCcc
Confidence 4442 24442 56666666666 666666666666666666666666555555444433
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-37 Score=303.56 Aligned_cols=243 Identities=19% Similarity=0.279 Sum_probs=196.6
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCCCCc---
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTN--- 169 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~~~~--- 169 (498)
.|+|||||||.||||+|+|..+||+|+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+.+.+ +.....
T Consensus 2 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~ 80 (281)
T 3juk_A 2 IKKCLFPAAGYGTRFLPITKTIPKEMLPIVDK-PLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTN 80 (281)
T ss_dssp CCEEEEECCSCCGGGTTGGGTSCGGGCBSSSS-BHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------CC
T ss_pred ceEEEEECCcCCcccCccccCCCcccceECCE-EHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhhhhhccc
Confidence 47999999999999999999999999999999 9999999999999999999999999999988885432 111000
Q ss_pred ------------CCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-----HHH
Q 010874 170 ------------FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-----YMD 232 (498)
Q Consensus 170 ------------~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-----l~~ 232 (498)
++ ..+.++. +. +..||+++|+.++.+++ .++|+|++||++++.+ +.+
T Consensus 81 ~~~~~~~~~~~~~~-~~i~~~~--~~-------~~~Gt~~al~~a~~~l~------~~~~lv~~~D~~~~~~~~~~~l~~ 144 (281)
T 3juk_A 81 KENALKSIRNIIEK-CCFSYVR--QK-------QMKGLGHAILTGEALIG------NEPFAVILADDLCISHDHPSVLKQ 144 (281)
T ss_dssp HHHHHHHHHHHHHH-CEEEEEE--CS-------SCCCHHHHHHHTHHHHC------SSCEEEECTTEEEECTTSCCHHHH
T ss_pred chhhhhhhhccccC-ccEEEEe--cC-------CCCCcHHHHHHHHHHcC------CCCEEEEeCCeeccCccchHHHHH
Confidence 11 1233332 22 23799999999998874 3789999999999998 999
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCceEEEECC--CC--CEEEEEeCCCccccccccccccccCCCccccccCCcceee
Q 010874 233 FIQSHVDRDADITISCAAVGESRASDYGLVKIDN--MG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM 308 (498)
Q Consensus 233 ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d~--~g--rV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (498)
+++.|.+.++ .++++.+++.+.+++||++..|+ +| +|..|.|||..... .++++++
T Consensus 145 l~~~~~~~~~-~~v~~~~~~~~~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~~~~-------------------~~~~~~~ 204 (281)
T 3juk_A 145 MTSLYQKYQC-SIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQEDA-------------------PSNLAVI 204 (281)
T ss_dssp HHHHHHHHCS-CEEEEEECCTTTGGGSEEEEEEEEETTEEEEEEEEESCCTTTC-------------------SCSEEEE
T ss_pred HHHHHHHcCC-CEEEEEEechhhcccCCEEEeccCCCCceEEeEEEECcCCCCC-------------------CcceeEE
Confidence 9999998887 68887777655578899999986 78 99999999973211 2478999
Q ss_pred eEEEEcHHHHHHHHHhhCCC--CCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhcc
Q 010874 309 GVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (498)
Q Consensus 309 GIYif~~~vL~~ll~~~~~~--~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~ 374 (498)
|+|+|++++|. .++...+. .+..++++++.+++++++++|.++++|.|||||++|++|++.+++.
T Consensus 205 GiYi~~~~~l~-~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~ 271 (281)
T 3juk_A 205 GRYILTPDIFE-ILSETKPGKNNEIQITDALRTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKK 271 (281)
T ss_dssp EEEEECTTHHH-HHHTCCCCGGGSCCHHHHHHHHHHHSCCEEEECCSEEEETTSHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHH-HHHhcCCCCCCceeHHHHHHHHHhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence 99999999985 44543221 2223589999999889999999999999999999999999999865
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=284.63 Aligned_cols=236 Identities=19% Similarity=0.320 Sum_probs=193.7
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccC-chhHHHHHHhhccCCCCcCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~-~~~l~~hl~~~~~~~~~~~~ 171 (498)
+.|+|||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++ .+++.+|+.. +..|+
T Consensus 23 ~~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~~-----~~~~~ 96 (269)
T 4ecm_A 23 NAMKGIILAGGTGSRLYPITKVTNKHLLPVGRY-PMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLGS-----GQEFG 96 (269)
T ss_dssp -CEEEEEECCSCCGGGTTTTSSSCGGGSEETTE-EHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-----SGGGT
T ss_pred cCcEEEEECCCCccccccccCCCCceecEECCE-EHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHhh-----ccccC
Confidence 568999999999999999999999999999999 9999999999999999999999975 3667677642 22333
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEec
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
. .+.++. +. +..||+++|+.++.+++ .++|+|++||++++.++.++++.|++.++++++++.+.
T Consensus 97 ~-~i~~~~--~~-------~~~G~~~al~~a~~~~~------~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 160 (269)
T 4ecm_A 97 V-SFTYRV--QD-------KAGGIAQALGLCEDFVG------NDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSV 160 (269)
T ss_dssp C-EEEEEE--CS-------SCCCHHHHHHTTHHHHT------TSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEEC
T ss_pred c-eEEEee--CC-------ccCcHHHHHHHHHHhcC------CCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEEC
Confidence 1 233332 22 13699999999988774 47999999999999999999999999899999999887
Q ss_pred CCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC--CC
Q 010874 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--TS 329 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~--~~ 329 (498)
++ +..||++..| +|+|..|.|||..+. ++++++|+|+|++++|. .++...+ ..
T Consensus 161 ~~--~~~~g~v~~d-~g~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~~l~-~l~~~~~~~~g 215 (269)
T 4ecm_A 161 DD--PERFGVANIQ-NRKIIEIEEKPKEPK---------------------SSYAVTGIYLYDSKVFS-YIKELKPSARG 215 (269)
T ss_dssp SC--GGGSEEEEEE-TTEEEEEEESCSSCS---------------------CSEEEEEEEEECTTHHH-HHTSCCBCTTS
T ss_pred CC--CCCceEEEEc-CCEEEEEEECCCCCC---------------------CcEEEEEEEEECHHHHH-hhhhcCCCCCC
Confidence 75 5679999998 499999999986432 37899999999999885 4443322 12
Q ss_pred CchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccC
Q 010874 330 NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (498)
Q Consensus 330 ~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~ 375 (498)
..+..++++.+++++++.++.++++|.|||||++|.+|++.+++..
T Consensus 216 e~~l~d~l~~l~~~g~v~~~~~~~~~~dIgt~~dl~~a~~~l~~~~ 261 (269)
T 4ecm_A 216 ELEITDINNWYLKRGVLTYNEMSGWWTDAGTHVSLQRANALARDIN 261 (269)
T ss_dssp CBCHHHHHHHHHHTTCEEEEECCSCEEECSSHHHHHHHHHHTTTCC
T ss_pred eeeHHHHHHHHHHcCCEEEEEeCCEEEeCCCHHHHHHHHHHHHhcc
Confidence 2336889999998889999999999999999999999999987643
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=282.11 Aligned_cols=246 Identities=22% Similarity=0.287 Sum_probs=191.5
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cC-----
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG----- 165 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~----- 165 (498)
++.|+|||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+...+ +.
T Consensus 6 ~~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~ 84 (302)
T 2e3d_A 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEK 84 (302)
T ss_dssp CSCCEEEEECCSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHHHHHHC-
T ss_pred hcccEEEEECCcCcccCCccccCCCceeeEECCe-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhhhhhhhh
Confidence 3468999999999999999999999999999999 9999999999999999999999998889988885321 00
Q ss_pred CCC-----------cCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeec------
Q 010874 166 NGT-----------NFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM------ 228 (498)
Q Consensus 166 ~~~-----------~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~------ 228 (498)
.+. .++ ..+.++. +. +..||+++|+.++.++. .++|+|++||++++.
T Consensus 85 ~~~~~~l~~~~~~~~~~-~~i~~~~--~~-------~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~~~~~~ 148 (302)
T 2e3d_A 85 RVKRQLLDEVQSICPPH-VTIMQVR--QG-------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLS 148 (302)
T ss_dssp ---CHHHHHHHHTSCTT-CEEEEEE--CS-------SCCCHHHHHHHTHHHHC------SSCEEEECTTEEECTTSSCTT
T ss_pred ccchhhhhhhhhccccC-cceEEee--CC-------ccCCHHHHHHHHHHHcC------CCcEEEEcCCccccCccccch
Confidence 000 011 1233332 21 23699999999988774 378999999999873
Q ss_pred --CHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEEC----CCC---CEEEEEeCCCccccccccccccccCCCcccc
Q 010874 229 --DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID----NMG---RIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (498)
Q Consensus 229 --dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d----~~g---rV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~ 299 (498)
++.++++.|++.++ +|+++.+.++ ++.||++..+ ++| +|..|.|||.....
T Consensus 149 ~~~l~~l~~~~~~~~~-~~i~~~~~~~--~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~~~----------------- 208 (302)
T 2e3d_A 149 QDNLAEMIRRFDETGH-SQIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA----------------- 208 (302)
T ss_dssp TSTHHHHHHHHHHHCC-EEEEEEECSC--GGGSEEEECTTCCCCTTCEEEECEEEESCCTTTC-----------------
T ss_pred HHHHHHHHHHHHhcCC-cEEEEEEccC--CCCccEEEecccccCCCCceeEEEEEECCCCCcc-----------------
Confidence 79999999988777 7777777643 5689999874 567 89999999863211
Q ss_pred ccCCcceeeeEEEEcHHHHHHHHHhhCCC--CCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccCCC
Q 010874 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPA 377 (498)
Q Consensus 300 ~~~~~l~~~GIYif~~~vL~~ll~~~~~~--~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~ 377 (498)
.++++++|+|+|++++|. .++...+. ...+..++++.++++++++++.++++|.|||||++|++|++.++.+.+.
T Consensus 209 --~~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~~~~~~~~~ 285 (302)
T 2e3d_A 209 --PSNLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNT 285 (302)
T ss_dssp --SCSEEEEEEEEECTTHHH-HHTCCCC----CCCHHHHHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHHHHHHHCTT
T ss_pred --ccceEEEEEEEECHHHHH-HHHhhCCCCCCceehHHHHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhcCcc
Confidence 236899999999999885 44443332 2234578898888878999999999999999999999999777655443
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=271.42 Aligned_cols=245 Identities=18% Similarity=0.278 Sum_probs=180.0
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhcc-CCCCcC--
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYF-GNGTNF-- 170 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~-~~~~~~-- 170 (498)
+|+|||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.+. ..+..+
T Consensus 2 ~~~avIlAaG~gtRl~~lt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~ 80 (259)
T 1tzf_A 2 ASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHM 80 (259)
T ss_dssp CCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEG
T ss_pred CcEEEEECCCCcccCCCccCCCCccccEECCE-EHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhcccccccccccc
Confidence 47899999999999999999999999999999 99999999999999999999999998999888864210 001110
Q ss_pred CCCeEEEecccCCCCC---CCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEE
Q 010874 171 GDGFVEVLAATQTPGE---SGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITIS 247 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~---~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~ 247 (498)
+.+.++++.....+.+ ..+....||+++|+.++.+++ ..++|++++||+++..++.++++.|.+.++++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~-----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~ 155 (259)
T 1tzf_A 81 AENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK-----DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLT 155 (259)
T ss_dssp GGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT-----TSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEE
T ss_pred cccceeeeeccccccceeeeecccccCcHHHHHHHHHhcC-----CCCcEEEEECCEecccCHHHHHHHHHHhCCeEEEE
Confidence 0001223211000000 000013699999999987663 24789999999999999999999999888888775
Q ss_pred EEecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC
Q 010874 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (498)
Q Consensus 248 ~~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~ 327 (498)
..+ . ++.||++.+| +|+|..|.|||..+ .+++++|+|+|++++|.. ++.
T Consensus 156 ~~~--~--~~~~g~v~~~-~g~v~~~~ekp~~~----------------------~~~~~~Giy~~~~~~l~~-l~~--- 204 (259)
T 1tzf_A 156 ATF--P--PGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSVIDL-IDN--- 204 (259)
T ss_dssp EEC--C--CCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGGGGG-CCS---
T ss_pred Eec--C--CCCccEEEEc-CCEEEEEEecCCCC----------------------CceEEEEEEEeCHHHHHh-hcc---
Confidence 432 2 4679999888 79999999998642 257899999999998842 221
Q ss_pred CCCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccC
Q 010874 328 TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (498)
Q Consensus 328 ~~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~ 375 (498)
...+|..++++.++++++++++.++++|.||||++||.+|++.+.+..
T Consensus 205 ~~~~~~~~~i~~~~~~~~v~~~~~~~~~~dI~t~~d~~~a~~~~~~~~ 252 (259)
T 1tzf_A 205 DATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGK 252 (259)
T ss_dssp TTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHcCCEEEEEeCcEEEeCCCHHHHHHHHHHHhcCC
Confidence 123456788988888889999999999999999999999999887643
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=281.58 Aligned_cols=247 Identities=18% Similarity=0.247 Sum_probs=174.1
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-c-----CC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-F-----GN 166 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~-----~~ 166 (498)
..|+|||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.+ + ..
T Consensus 13 ~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~ 91 (297)
T 2ux8_A 13 PLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDR-PLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAAR 91 (297)
T ss_dssp CCCEEEEEECCCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHHTT
T ss_pred CccEEEEECCCCccccCccccCCCceeeeECCe-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhhc
Confidence 458999999999999999999999999999999 9999999999999999999999999888988875321 0 00
Q ss_pred C---------CcCCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeee---cCHHHHH
Q 010874 167 G---------TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR---MDYMDFI 234 (498)
Q Consensus 167 ~---------~~~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~---~dl~~ll 234 (498)
+ ..++ ..+.++... +..||+++|+.++.+++ .++|+|++||++++ .++.+++
T Consensus 92 ~~~~~~~~~~~~~g-~~i~~~~~~---------~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~~~~l~~l~ 155 (297)
T 2ux8_A 92 GKSLDVLDGTRLKP-GNIAYVRQQ---------EPMGLGHAVWCARDIVG------DEPFAVLLPDDFMFGQPGCLKQMV 155 (297)
T ss_dssp TCCGGGGTTSCCST-TSEEEEECC---------SCCCHHHHHHTTHHHHC------SSCEEEECTTEEEESSSCHHHHHH
T ss_pred cchhhhhhhcccCC-CceEEEeCC---------CCCChHHHHHHHHHHcC------CCcEEEEeCCeecCCChHHHHHHH
Confidence 0 0011 124444321 23699999999988774 37899999999987 5699999
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCceEEEECC--CC--CEEEEEeCCCccccccccccccccCCCccccccCCcceeeeE
Q 010874 235 QSHVDRDADITISCAAVGESRASDYGLVKIDN--MG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV 310 (498)
Q Consensus 235 ~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d~--~g--rV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI 310 (498)
+.|++.++ .++++.+.+...++.||++..|+ +| +|..|.|||..... .++++++|+
T Consensus 156 ~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~-------------------~~~~~~~Gi 215 (297)
T 2ux8_A 156 DAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTA-------------------PSNLSVIGR 215 (297)
T ss_dssp HHHHHHCS-EEEEEC-----------CCCCCCBCSSEEEC---------------------------------CCCEEEE
T ss_pred HHHHhcCC-CEEEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCCCC-------------------CccEEEEEE
Confidence 99988776 57777665433456799887763 55 89999999853210 236889999
Q ss_pred EEEcHHHHHHHHHhhCCC--CCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccCCC
Q 010874 311 YVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPA 377 (498)
Q Consensus 311 Yif~~~vL~~ll~~~~~~--~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~ 377 (498)
|+|++++|.. ++...+. ...++.++++.++++++++++.++++|.|||||++|.+|++.++.+.+.
T Consensus 216 yi~~~~~l~~-l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~~~~~ 283 (297)
T 2ux8_A 216 YILQPEVMRI-LENQGKGAGGEIQLTDAMQRMIGDQPFHGVTFQGTRYDCGDKAGFIQANLAVALSRPD 283 (297)
T ss_dssp EEECTHHHHH-HHHTC--------CCTTGGGGTTTSCEEEEECSSEEEETTSHHHHHHHHHHHHHHCTT
T ss_pred EEECHHHHHH-HHhhCCCCCCeeEHHHHHHHHHhcCCEEEEEecceEEeCCCHHHHHHHHHHHHhcChh
Confidence 9999998754 4543322 1223467888888888999999999999999999999999888766543
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-32 Score=275.46 Aligned_cols=249 Identities=20% Similarity=0.270 Sum_probs=188.9
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cC-----C
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG-----N 166 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~-----~ 166 (498)
+.|+|||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+...+ |. .
T Consensus 11 ~~~~aVIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~ 89 (323)
T 2pa4_A 11 AVKTVVVPAAGLGTRFLPATKTVPKELLPVVDT-PGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMER 89 (323)
T ss_dssp -CCEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHT
T ss_pred cceEEEEECCCCccccCccccCCCceeeeECCE-EHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhcc
Confidence 348999999999999999999999999999999 9999999999999999999999999888877764211 00 0
Q ss_pred C--------Cc--CCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeee--cCHHHHH
Q 010874 167 G--------TN--FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFI 234 (498)
Q Consensus 167 ~--------~~--~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~--~dl~~ll 234 (498)
+ .. ++ ..+.++. +. +..||+++|+.++.++.+ ..+.|+|++||++++ .++..++
T Consensus 90 ~~~~~~~~~~~~~~g-~~i~~~~--~~-------~~~Gt~~al~~a~~~l~~----~~d~~lv~~~D~~~~~~~~l~~l~ 155 (323)
T 2pa4_A 90 GKTDQVEIIRRAADL-IKAVPVT--QD-------KPLGLGHAVGLAESVLDD----DEDVVAVMLPDDLVLPTGVMERMA 155 (323)
T ss_dssp TCHHHHHHTTHHHHH-CEEEEEE--CS-------SCCCHHHHHHTTGGGSCS----SCCEEEEECTTEEEESSCHHHHHH
T ss_pred chhhhhhhhhccccC-cceEEEe--CC-------ccCCcHHHHHHHHHHhcC----CCCeEEEEeCCcccCchHHHHHHH
Confidence 0 00 11 1244333 21 136999999998766531 113399999999887 5799999
Q ss_pred HHHHHcCCCeEEEEEecCCCCCCCceEEEEC----CCC--CEEEEEeCCCccccccccccccccCCCccccccCCcceee
Q 010874 235 QSHVDRDADITISCAAVGESRASDYGLVKID----NMG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM 308 (498)
Q Consensus 235 ~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d----~~g--rV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (498)
+.|++.++ .++++.+++.+.++.||++..| +++ +|..|.|||..... .++++++
T Consensus 156 ~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~~~-------------------~~~~~~~ 215 (323)
T 2pa4_A 156 QVRAEFGG-SVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDA-------------------PSRLAAT 215 (323)
T ss_dssp HHHHTTCS-EEEEEEECCGGGGGGSEEEEEEECCSSTTEEEEEEEEESCCTTTC-------------------SCSEEEE
T ss_pred HHHHhcCC-cEEEEEEecccccCCccEEEeCCcccCCCceeEEEEEECCCCccc-------------------cccEEEE
Confidence 99987765 5777777654446689999887 554 99999999853211 2368999
Q ss_pred eEEEEcHHHHHHHHHhhCCC--CCchhhhhHHHHhhc-CceEEEEEcceEeecCCHHHHHHHHHHhhccCCC
Q 010874 309 GVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPA 377 (498)
Q Consensus 309 GIYif~~~vL~~ll~~~~~~--~~df~~dii~~~i~~-~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~ 377 (498)
|+|+|++++|.. ++...+. ...++.++++.++++ .+++++.++++|.|||||++|.+|++.++.+.+.
T Consensus 216 GiY~~~~~~~~~-l~~~~~~~~ge~~l~d~i~~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~~~~~ 286 (323)
T 2pa4_A 216 GRYLLDRKIFDA-LRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSHPV 286 (323)
T ss_dssp EEEEEETHHHHH-HHHCCCCGGGCCCHHHHHHHHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHHHTCTT
T ss_pred EEEEECHHHHHH-HHhhCCCCCCeEeHHHHHHHHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhhcChh
Confidence 999999998864 4443322 122347899998887 7899999999999999999999999888765443
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=275.58 Aligned_cols=260 Identities=15% Similarity=0.155 Sum_probs=189.5
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceec--CCcchhHHHHHHHHHhcCCCeEEEEeccCc-hhHHHHHHhhccCCCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPV--AGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGT 168 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI--~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~-~~l~~hl~~~~~~~~~ 168 (498)
|++|.|||||||.||||+| ||+|+|| +|+ |||+|+++++.++|+++|+|++++.. +++.+|+...+
T Consensus 3 ~m~~~~vIlAaG~g~R~~~-----~K~l~~ig~~g~-pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~----- 71 (303)
T 3pnn_A 3 AMKPTLFVLAAGMGSRYGS-----LKQLDGIGPGGD-TIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTKY----- 71 (303)
T ss_dssp CCCCEEEEECTTCBCTTSS-----BCCCCCCSTTSC-CHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHHH-----
T ss_pred CCceEEEEECCCCcccCCC-----CceEeEcCCCCe-eHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHHh-----
Confidence 5678999999999999998 6999999 599 99999999999999999999999985 78988886433
Q ss_pred cCCCCeEEEecccCC---CC---CCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHH--
Q 010874 169 NFGDGFVEVLAATQT---PG---ESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD-- 239 (498)
Q Consensus 169 ~~~~~~V~v~~~~q~---~~---~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~-- 239 (498)
.++ ..+.++..... .+ .....+.+||++||+++++++ .++|+|++||++++.+ +.++++.|.+
T Consensus 72 ~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i-------~~~~lV~~gD~l~~~~~~~~l~~~~~~~~ 143 (303)
T 3pnn_A 72 EGR-IPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI-------REPFAVINADDFYGRNGFEVLARKLMTLE 143 (303)
T ss_dssp TTT-SCEEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTC-------CSCEEEEESSCBCCHHHHHHHHHHHHTTT
T ss_pred ccC-CcEEEEecccccccccccccccccccCCcHHHHHHHHHhc-------CCCEEEEECCeecCHHHHHHHHHHHHHhc
Confidence 111 12444322100 00 000013479999999997665 3789999999999876 8999999986
Q ss_pred -cCCCeEEEEEecCCCCCCCc-----eEEEECCCCCEEEEEeCCCcccccc-ccccccccCCCccccccCCcceeeeEEE
Q 010874 240 -RDADITISCAAVGESRASDY-----GLVKIDNMGRIAQFAEKPSGANLKA-MQVDTSLLGFSPQEARKCPYVASMGVYV 312 (498)
Q Consensus 240 -~~ad~tv~~~~~~~~~~~~~-----g~v~~d~~grV~~~~EKp~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~GIYi 312 (498)
.++++++++.+++++ .+.| |++.+|++|+|+.|.|||....... ..++.. =|- ......++++++|+|+
T Consensus 144 ~~~~~~~v~~~~~~~~-~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~~-~g~--~~~~~~~~~i~~GiY~ 219 (303)
T 3pnn_A 144 GKQGEYCMVGYRVGNT-LSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDE-TGK--ICTLAEDAPVSMNMWG 219 (303)
T ss_dssp TCSSEEEEEEEEGGGS-CBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEEECT-TSC--EEEECTTCEEEEEEEE
T ss_pred cccCceEEEEEECCCc-cCccCceeeeeEeeCCCCcEEEEEECCCCcccccccccccc-ccc--cccCCCCCEEEEEEEE
Confidence 578899999888763 1445 6889998999999999986421000 000000 000 0000124789999999
Q ss_pred EcHHHHHHHHH-------hhCC--CCCchhhhhHHHHhhcC--ceEEEEEcceEeecCCHHHHHHHHHHhhcc
Q 010874 313 FKKDVLFKLLR-------WRYP--TSNDFGSEIIPAAIMEH--DVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (498)
Q Consensus 313 f~~~vL~~ll~-------~~~~--~~~df~~dii~~~i~~~--~I~~~~~~~~w~dIgt~~dy~~An~~ll~~ 374 (498)
|++++|..+-+ +..+ ..+.+++++++.+++++ +|++|.++++|.|||||++|.+|+..+.+.
T Consensus 220 f~~~~~~~l~~~~~~~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~~ 292 (303)
T 3pnn_A 220 FTPDYFDYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLREL 292 (303)
T ss_dssp ECTHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHHH
Confidence 99999865432 1111 23445789999999887 799999999999999999999999987653
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=267.00 Aligned_cols=233 Identities=25% Similarity=0.396 Sum_probs=186.5
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEe-ccCchhHHHHHHhhccCCCCcCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLT-QFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~-~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
+|+|||||||.||||+|+|..+||+|+||+|+ |||+|++++|.++|+++|+|++ +++.+++.+++.. +.+|+.
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~-----g~~~g~ 75 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGD-----GSNWGL 75 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-----SGGGTC
T ss_pred CceEEEECCCCCCcCccccCCCCceeCeECCE-eHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHhc-----ccccCc
Confidence 58999999999999999999999999999999 9999999999999999999887 4566777777742 223442
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-ecCHHHHHHHHHHcCCCeEEEEEec
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~-~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
.+.+.. |.. ..|++++++.+..++. .++++++.||+++ +.++.++++.|.+.+.++++++.++
T Consensus 76 -~i~~~~--~~~-------~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v 139 (293)
T 1fxo_A 76 -DLQYAV--QPS-------PDGLAQAFLIGESFIG------NDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHV 139 (293)
T ss_dssp -EEEEEE--CSS-------CCCGGGHHHHTHHHHT------TSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEEC
T ss_pred -eEEEee--CCC-------CCCHHHHHHHHHHHhC------CCCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEEC
Confidence 233332 321 3699999999988874 3788999999865 6789999999987777888888877
Q ss_pred CCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC-CC
Q 010874 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SN 330 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~-~~ 330 (498)
.+ +.+||++.+|++|+|..|.|||..+. ++++++|+|+|++++|..+ +...+. ..
T Consensus 140 ~d--p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~~~-~~~~~~~~g 195 (293)
T 1fxo_A 140 LD--PERYGVVEFDQGGKAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVDIA-RDLKPSPRG 195 (293)
T ss_dssp SC--GGGSEEEEECTTSCEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHHHH-HHCCCCTTS
T ss_pred CC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCeEEEEEEEEcHHHHHHH-HhcCcccCC
Confidence 66 56799999999999999999986432 3689999999999998644 433232 12
Q ss_pred -chhhhhHHHHhhcCceEEEEEc-ce-EeecCCHHHHHHHHHHhh
Q 010874 331 -DFGSEIIPAAIMEHDVQAYIFR-DY-WEDIGTIKSFYEANMALT 372 (498)
Q Consensus 331 -df~~dii~~~i~~~~I~~~~~~-~~-w~dIgt~~dy~~An~~ll 372 (498)
-..+++++.+++.+++.++... +| |.||||++||.+|+..+.
T Consensus 196 e~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 240 (293)
T 1fxo_A 196 ELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 240 (293)
T ss_dssp SCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHhcCCeEEEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence 2347888888888888888875 75 999999999999998774
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=266.96 Aligned_cols=229 Identities=12% Similarity=0.123 Sum_probs=172.9
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~-sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V 175 (498)
+||||||.||||+|+|..+||||+||+|+ |||+|+|+++.+ +|+++|+|++++..+ +.+++.+.. . +++...+
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~gk-pli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~-~---~~~~~~~ 75 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQ-TLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKA-T---QLGIKQF 75 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEETTE-EHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHH-H---HHTCSSE
T ss_pred EEEEcCCCCcccccCCCCCCccccEECCe-EHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHH-H---HcCCCCc
Confidence 79999999999999999999999999999 999999999999 799999999998876 555664322 0 1111112
Q ss_pred EEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-ecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 176 ~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~-~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
.++.. |. +.+||++||++++.++.+......++|+|++||+++ +.++.++ ..+++.++++.++++
T Consensus 76 ~~~~~-~~-------~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~~- 141 (255)
T 4evw_A 76 YIAEL-HT-------ETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGGG- 141 (255)
T ss_dssp EEEEE-SS-------CCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECCS-
T ss_pred eEEEe-CC-------CCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecCC-
Confidence 22211 21 237999999999988831000134789999999988 5566543 256778999888875
Q ss_pred CCCCceEEEECCCC--CEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHH-HHHHHHH----hhCC
Q 010874 255 RASDYGLVKIDNMG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLFKLLR----WRYP 327 (498)
Q Consensus 255 ~~~~~g~v~~d~~g--rV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~-vL~~ll~----~~~~ 327 (498)
+ .||++..|++| +|..|.||+.. ++++++|+|+|++. .|.+.+. ...+
T Consensus 142 -p-~yG~v~~d~~g~~~V~~i~EK~~~-----------------------s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~ 196 (255)
T 4evw_A 142 -D-NWSFAKPEHAGSTKVIQTAEKNPI-----------------------SDLCSTGLYHFNRKEDYLEAYREYVARPSQ 196 (255)
T ss_dssp -S-CSCEEEESSTTCCBEEEEESSSCS-----------------------SSEEEEEEEEESCHHHHHHHHHHHHTSCGG
T ss_pred -C-ceeEEEECCCCCeEEEEEEeccCc-----------------------cCcEEEeEEEECcHHHHHHHHHHHHhcccc
Confidence 3 89999999888 99999999431 36899999999985 3433332 2111
Q ss_pred ---CCCchhhhhHHHHhhc-CceEEEEEc-ceEeecCCHHHHHHHHHH
Q 010874 328 ---TSNDFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMA 370 (498)
Q Consensus 328 ---~~~df~~dii~~~i~~-~~I~~~~~~-~~w~dIgt~~dy~~An~~ 370 (498)
..+.+++++++.++++ .++.++.++ ++|.|||||++|.++...
T Consensus 197 ~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~~ 244 (255)
T 4evw_A 197 EWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLRQ 244 (255)
T ss_dssp GCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHHC
T ss_pred cccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHhc
Confidence 3445688999999876 479999986 999999999999999653
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-31 Score=265.47 Aligned_cols=233 Identities=21% Similarity=0.353 Sum_probs=186.1
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEec-cCchhHHHHHHhhccCCCCcCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~-~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
.|++||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++ ++.+.+.+++.. +..|+.
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~~-----g~~~g~ 76 (295)
T 1lvw_A 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGD-----GSQFGV 76 (295)
T ss_dssp SCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-----SGGGTS
T ss_pred ceEEEEECCCCCCccccccCCCCceecEECCe-eHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhhh-----ccccCc
Confidence 37999999999999999999999999999999 99999999999999999999885 667777777742 223442
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-ecCHHHHHHHHHHcCCCeEEEEEec
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~-~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
.+.++. |.. ..|++++++.+..++. .++++++.||+++ +.++.++++.|.+.+.++++++.++
T Consensus 77 -~i~~~~--~~~-------~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v 140 (295)
T 1lvw_A 77 -RFSYRV--QEE-------PRGIADAFIVGKDFIG------DSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYV 140 (295)
T ss_dssp -EEEEEE--CSS-------CCCGGGHHHHTHHHHT------TSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEEC
T ss_pred -eEEEee--CCC-------CCChHHHHHHHHHHhC------CCcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEEC
Confidence 233332 221 2699999999988874 3678888899854 6789999999987777888888887
Q ss_pred CCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC-CC
Q 010874 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SN 330 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~-~~ 330 (498)
.+ +.+||++.+|++|+|..|.|||..+. ++++++|+|+|++++|..+ +...+. ..
T Consensus 141 ~d--p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~f~~~~l~~~-~~~~~~~~g 196 (295)
T 1lvw_A 141 RD--PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVEIA-RRIEPSDRG 196 (295)
T ss_dssp SC--CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHHHH-HHCCCCTTS
T ss_pred CC--cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEeEEEcHHHHHHH-HhcCCcccC
Confidence 76 55799999999999999999986432 3688999999999998654 433222 11
Q ss_pred -chhhhhHHHHhhcCceEEEEEc-ce-EeecCCHHHHHHHHHHhh
Q 010874 331 -DFGSEIIPAAIMEHDVQAYIFR-DY-WEDIGTIKSFYEANMALT 372 (498)
Q Consensus 331 -df~~dii~~~i~~~~I~~~~~~-~~-w~dIgt~~dy~~An~~ll 372 (498)
...+++++.+++.+++.++.+. +| |.||||++||.+|+..+.
T Consensus 197 e~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (295)
T 1lvw_A 197 ELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHcCCcEEEEeCCCCeEEeCCCHHHHHHHHHHHH
Confidence 2247888888888888888885 75 999999999999998774
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-31 Score=267.19 Aligned_cols=234 Identities=23% Similarity=0.349 Sum_probs=186.1
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEec-cCchhHHHHHHhhccCCCCcCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~-~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
.|++||||||.||||+|+|..+||+|+||+|+ |||+|++++|..+|+++|+|+++ ++.+.+.+++.. +..|+.
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~-----g~~~g~ 76 (296)
T 1mc3_A 3 HMKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGD-----GSEFGI 76 (296)
T ss_dssp CCEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-----SGGGTC
T ss_pred ccEEEEECCCCCCcCCcccCCCCceeeEECCe-eHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHhc-----ccccCc
Confidence 37999999999999999999999999999999 99999999999999999999886 667777777742 223441
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-ecCHHHHHHHHHHcCCCeEEEEEec
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~-~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
.+.++. |.. ..|++++++.+..+++ .++++++.||+++ +.++.++++.|.+.+.++++++.++
T Consensus 77 -~i~~~~--~~~-------~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v 140 (296)
T 1mc3_A 77 -QLEYAE--QPS-------PDGLAQAFIIGETFLN------GEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQV 140 (296)
T ss_dssp -EEEEEE--CSS-------CCCSTHHHHHTHHHHT------TSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEEC
T ss_pred -eEEEec--cCC-------CCCHHHHHHHHHHHhC------CCCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEEC
Confidence 233332 221 3699999999988874 3678888899864 6789999999977777888888887
Q ss_pred CCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC-CC
Q 010874 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SN 330 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~-~~ 330 (498)
.+ +..||++.+|++|+|..|.|||..+. ++++++|+|+|+++++.. ++...+. ..
T Consensus 141 ~d--p~~yg~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~~-~~~~~~~~~g 196 (296)
T 1mc3_A 141 MD--PERFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVEY-AKQVKPSERG 196 (296)
T ss_dssp SC--CSSSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHHH-HHSCCCCSSS
T ss_pred CC--cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEcHHHHHH-HHhcCccccC
Confidence 76 55799999999999999999986432 368999999999999864 3433332 11
Q ss_pred -chhhhhHHHHhhcCceEEEEEc-ce-EeecCCHHHHHHHHHHhhc
Q 010874 331 -DFGSEIIPAAIMEHDVQAYIFR-DY-WEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 331 -df~~dii~~~i~~~~I~~~~~~-~~-w~dIgt~~dy~~An~~ll~ 373 (498)
...+++++.+++.+++.++.+. +| |.||||++||.+|+..+..
T Consensus 197 e~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~~ 242 (296)
T 1mc3_A 197 ELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQT 242 (296)
T ss_dssp SCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHhcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHHH
Confidence 2347888888888888888875 75 9999999999999987753
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=262.29 Aligned_cols=241 Identities=17% Similarity=0.312 Sum_probs=154.9
Q ss_pred CceEEEEEeCCCCCcccCCcc-CCCccceec-CCcchhHHHHHHHHHhcCCCeEEEEeccCc-hhHHHHHHhhccCCCCc
Q 010874 93 KNVAAIILGGGAGTKLFPLTL-RAATPAVPV-AGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTN 169 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~-~~PK~LlpI-~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~-~~l~~hl~~~~~~~~~~ 169 (498)
++|+|||||||.||||+|||. .+||+|+|| +|+ |||+|+++++.++ +++|+|+++++. +.+.+++.+.
T Consensus 3 ~~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~-pli~~~l~~l~~~-~~~i~vv~~~~~~~~i~~~~~~~------- 73 (308)
T 2qh5_A 3 LKIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHK-SLFELSFKRNASL-VDETLIVCNEKHYFLALEEIKNE------- 73 (308)
T ss_dssp CCEEEEEECC-------------CCGGGCTTBTTB-CHHHHHHHHHHTT-CSEEEEEEEGGGHHHHHHHTTTT-------
T ss_pred CccEEEEEcCCCCccCCccCCCCCCCEEEECCCCC-CHHHHHHHHHHcc-CCCEEEEEChhHHHHHHHHHHHh-------
Confidence 458999999999999999996 899999999 598 9999999999999 999999999875 4666666421
Q ss_pred CCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-ecC-HHHHHHH---HHHcCCCe
Q 010874 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQS---HVDRDADI 244 (498)
Q Consensus 170 ~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~-~~d-l~~ll~~---h~~~~ad~ 244 (498)
|+...+.++.... ..||+++++.+..++. ..+.|+|++||+++ +.+ |.++++. |.+.++++
T Consensus 74 ~~~~~~~~i~~~~---------~~gt~~al~~a~~~l~-----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (308)
T 2qh5_A 74 IKNKSVGFLLESL---------SKNTANAIALSALMSD-----KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLV 139 (308)
T ss_dssp CSSCEEEEEEESS---------CCCHHHHHHHHHHTSC-----TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred hCCCccEEEeCCC---------CCChHHHHHHHHHHhC-----CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEE
Confidence 2211244443221 3699999999987663 23469999999988 666 8999987 77778888
Q ss_pred EEEEEecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHh
Q 010874 245 TISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (498)
Q Consensus 245 tv~~~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~ 324 (498)
|+.+.+..+ ++.||++..|++|+|..|.|||........ + ....+++++|+|+|++++|.+.++.
T Consensus 140 t~~~~~~~~--~~~~g~i~~d~~~~V~~~~Ekp~~~~~~~~-~------------~~g~~~~n~Giy~~~~~~ll~~l~~ 204 (308)
T 2qh5_A 140 TFGVSIDKP--NTEFGYIESPNGLDVKRFIEKPSLDKAIEF-Q------------KSGGFYFNSGMFVFQAGVFLDELKK 204 (308)
T ss_dssp EEEEECSSC--CTTSEEEECSSSSBCSEEEESCCHHHHHHH-H------------HHCCEEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEecCCC--CCCceEEEECCCCEEEEEEECCChHHHHHH-h------------hcCCeEEEeEEEEEEHHHHHHHHHH
Confidence 888877654 467999988878999999999875321000 0 0013689999999999987555543
Q ss_pred hCCC--------------C----Cchh---hhhHH--------H-Hhhc-CceEEEEEcceEeecCCHHHHHHHHHHh
Q 010874 325 RYPT--------------S----NDFG---SEIIP--------A-AIME-HDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 325 ~~~~--------------~----~df~---~dii~--------~-~i~~-~~I~~~~~~~~w~dIgt~~dy~~An~~l 371 (498)
..+. . .++. .++++ . ++++ .+++++.++++|.|||||++|++++...
T Consensus 205 ~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~~ 282 (308)
T 2qh5_A 205 HAPTILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANE 282 (308)
T ss_dssp HCHHHHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC--------------
T ss_pred hChHHHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhcC
Confidence 2211 0 1121 24443 3 4554 6899999999999999999999998643
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-29 Score=242.18 Aligned_cols=222 Identities=16% Similarity=0.228 Sum_probs=163.6
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
++|.|||||||.||||+|||..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+ +.+. ++
T Consensus 24 ~~~~aiIlAaG~gtRl~plt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~-~~~~-------~~- 93 (254)
T 1jyk_A 24 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQFDY-LKEK-------YG- 93 (254)
T ss_dssp CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGGTH-HHHH-------HC-
T ss_pred cCceEEEECCCCcccCCcccCCCCCEEeeECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHH-HHHh-------CC-
Confidence 358999999999999999999999999999999 9999999999999999999999998877753 3332 22
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
++++...+.. ..||+++++.+..++ ++++|++||+++..++ ++.+.+.++.+|+ ...
T Consensus 94 --~~iv~~~~~~-------~~g~~~al~~a~~~~--------~~~lv~~~D~~~~~~~---~~~~~~~~~~~t~---~~~ 150 (254)
T 1jyk_A 94 --VRLVFNDKYA-------DYNNFYSLYLVKEEL--------ANSYVIDADNYLFKNM---FRNDLTRSTYFSV---YRE 150 (254)
T ss_dssp --CEEEECTTTT-------TSCTHHHHHTTGGGC--------TTEEEEETTEEESSCC---CCSCCCSEEEEEC---EES
T ss_pred --cEEEECCCcc-------CCCcHHHHHHHHHHC--------CCEEEEeCCcccCHHH---HHHHHhCCceEEE---Ecc
Confidence 3455433211 259999999886444 3589999999886553 2223223332332 223
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHH---HHHHhhCCC-
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF---KLLRWRYPT- 328 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~---~ll~~~~~~- 328 (498)
++ ...|+++ +|++|+|..|.|||.. .++++|+|+|+++.+. .+++...+.
T Consensus 151 ~~-~~~~~v~-~d~~g~v~~~~e~~~~------------------------~~~~~Giy~~~~~~~~~l~~~l~~~~~~~ 204 (254)
T 1jyk_A 151 DC-TNEWFLV-YGDDYKVQDIIVDSKA------------------------GRILSGVSFWDAPTAEKIVSFIDKAYVSG 204 (254)
T ss_dssp SC-SSCCEEE-ECTTCBEEEEECCCSS------------------------EEBCCSEEEECHHHHHHHHHHHHHHHTTT
T ss_pred cC-CCCeEEE-ECCCCeEEEEEECCCC------------------------CcEEEEEEEEcHHHHHHHHHHHHHHHhcC
Confidence 21 1257755 8888999999997531 4789999999987443 334432221
Q ss_pred --CCchhhhhHHHHhhcCceEEEEEc-ceEeecCCHHHHHHHHHHhhc
Q 010874 329 --SNDFGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 329 --~~df~~dii~~~i~~~~I~~~~~~-~~w~dIgt~~dy~~An~~ll~ 373 (498)
.+.|++++++.+++..+++++.++ ++|.+|+|++||.+|++.+.+
T Consensus 205 ~~~e~~~~d~~~~l~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~~ 252 (254)
T 1jyk_A 205 EFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILKN 252 (254)
T ss_dssp CCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC-
T ss_pred CccccCHHHHHHHHHhhCCeEEEEecCCeEEEcCCHHHHHHHHHHhhh
Confidence 345677888878788899999998 799999999999999987754
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-29 Score=252.20 Aligned_cols=233 Identities=18% Similarity=0.273 Sum_probs=169.8
Q ss_pred eEEEEEeCCCCCcccCCc-cCCCccceecCC-cchhHHHHHHHHHhc-CCCeEEEEeccCc-hhHHHHHHhhccCCCCcC
Q 010874 95 VAAIILGGGAGTKLFPLT-LRAATPAVPVAG-CYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT-~~~PK~LlpI~G-~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~-~~l~~hl~~~~~~~~~~~ 170 (498)
|++||||||.||||+||| ..+||+|+|++| + |||+|+++++.++ |+++|+|++++.. +.+.+|+.+ ...+
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~-pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~-----~~~~ 75 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNK-SLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPE-----LPDE 75 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTB-CHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTT-----SCGG
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECCCCC-cHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhc-----cccc
Confidence 789999999999999999 789999999999 8 9999999999996 8999999999864 455555531 1111
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeec--CH----HHHHHHHHHcCCCe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM--DY----MDFIQSHVDRDADI 244 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~--dl----~~ll~~h~~~~ad~ 244 (498)
.+ ++.+ . .+||++++..+...+. ..+.+++++||+++.. +| ..+++.|.+.++.+
T Consensus 76 ---~i-i~e~-~---------~~gta~ai~~a~~~~~-----~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~v 136 (336)
T 2x65_A 76 ---NI-IAEP-M---------KKNTAPACFIGTKLAD-----DDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLF 136 (336)
T ss_dssp ---GE-EEES-S---------CCCHHHHHHHHHTTSC-----TTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEE
T ss_pred ---eE-EeCC-C---------CCCcHHHHHHHHHhhC-----CCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeE
Confidence 12 2221 1 2699999998865332 2467999999998754 44 44455577767778
Q ss_pred EEEEEecCCCCCCCceEEEECCC-----CCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHH
Q 010874 245 TISCAAVGESRASDYGLVKIDNM-----GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF 319 (498)
Q Consensus 245 tv~~~~~~~~~~~~~g~v~~d~~-----grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~ 319 (498)
|+.+.+... .+.||++..+++ ++|..|.|||.....+.. .....+++++|+|+|+++.|.
T Consensus 137 t~~i~p~~~--~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~~-------------~~~g~y~~n~Giy~~~~~~ll 201 (336)
T 2x65_A 137 TFGIVPTRP--ETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKF-------------VESGRFLWNSGMFLWKAREFI 201 (336)
T ss_dssp EEEECCCSC--CSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHHH-------------HHHTCEEEEEEEEEEEHHHHH
T ss_pred EEEeecccC--CCCceEEEECCccCCCccEEEEEEECCChHHHHHH-------------HhcCCeEEEeeeEEEEHHHHH
Confidence 887776654 367999998765 799999999975421100 001236899999999999885
Q ss_pred HHHHhhCCC-----------CCchhhhhHHH---------Hhhc-CceEEEEEcceEeecCCHHHHHHH
Q 010874 320 KLLRWRYPT-----------SNDFGSEIIPA---------AIME-HDVQAYIFRDYWEDIGTIKSFYEA 367 (498)
Q Consensus 320 ~ll~~~~~~-----------~~df~~dii~~---------~i~~-~~I~~~~~~~~w~dIgt~~dy~~A 367 (498)
+.++...|. ..+|..++++. ++++ .+++++.++++|.||||+++|+++
T Consensus 202 ~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 202 EEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp HHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 554432221 01445566665 3443 789999999999999999999999
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-27 Score=242.74 Aligned_cols=232 Identities=19% Similarity=0.295 Sum_probs=164.8
Q ss_pred ceEEEEEeCCCCCcccCCc-cCCCccceecCC-cchhHHHHHHHHHhc-CCCeEEEEeccCch-hHHHHHHhhccCCCCc
Q 010874 94 NVAAIILGGGAGTKLFPLT-LRAATPAVPVAG-CYRLIDIPMSNCINS-GINKIFVLTQFNSA-SLNRHIARTYFGNGTN 169 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT-~~~PK~LlpI~G-~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~~-~l~~hl~~~~~~~~~~ 169 (498)
+|.+||||||.||||+||| ..+||+|+|++| + |||+|+++++.++ |+++|+|++++... .+. .+++.
T Consensus 2 ~m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~-pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~-----~~l~~--- 72 (337)
T 2cu2_A 2 KTYALVMAGGRGERLWPLSREDRPKPFLPLFEGK-TLLEATLERLAPLVPPERTLLAVRRDQEAVAR-----PYADG--- 72 (337)
T ss_dssp CEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGC-BHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHG-----GGCSS---
T ss_pred CeEEEEEcCCCcccCCccCCCCCCceEEEcCCCC-hHHHHHHHHHhCcCCCCCEEEEcChHHHHHHH-----HHhcc---
Confidence 4899999999999999999 689999999999 7 9999999999998 89999999998642 232 22221
Q ss_pred CCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeec--CHHHHH----HHHHHcCCC
Q 010874 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM--DYMDFI----QSHVDRDAD 243 (498)
Q Consensus 170 ~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~--dl~~ll----~~h~~~~ad 243 (498)
..+ ++.+. ..||+.++..+.. +... ...+.+++++||+++.. ++..++ +.|.+ ++.
T Consensus 73 ---~~~-i~e~~----------~~gta~ai~~a~~-l~~~--~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~~ 134 (337)
T 2cu2_A 73 ---IRL-LLEPL----------GRDTAGAVLLGVA-EALK--EGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GFV 134 (337)
T ss_dssp ---SEE-EEESS----------CCHHHHHHHHHHH-HHHH--HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TCE
T ss_pred ---Cce-EecCC----------CCCcHHHHHHHHH-Hhcc--CCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCe
Confidence 112 33211 2699999998876 5321 12478999999998753 344444 44544 677
Q ss_pred eEEEEEecCCCCCCCceEEEECCC----CCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHH
Q 010874 244 ITISCAAVGESRASDYGLVKIDNM----GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF 319 (498)
Q Consensus 244 ~tv~~~~~~~~~~~~~g~v~~d~~----grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~ 319 (498)
+|+.+.+... .+.||++..+++ ++|..|.|||.....+.+ .. ..+++++|+|+|+++.|.
T Consensus 135 vt~~i~p~~~--~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~~-------------~~-~g~~~n~Giy~f~~~~ll 198 (337)
T 2cu2_A 135 VALGLRPTRP--ETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEY-------------IR-KGYVWNGGVFAFAPATMA 198 (337)
T ss_dssp EEEEECCSSC--CSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHH-------------HH-TTCEEEEEEEEECHHHHH
T ss_pred EEEeeccCCC--CCCceEEEECCcccccCeEEEEEeCCChHHHHHH-------------hh-cCCEEEEEEEEEeHHHHH
Confidence 7887776654 457999998765 799999999975321100 00 116899999999999885
Q ss_pred HHHHhhCCCCC-ch--------hhhhHHH---------Hhhc-CceEEEEEcceEeecCCHHHHHHHH
Q 010874 320 KLLRWRYPTSN-DF--------GSEIIPA---------AIME-HDVQAYIFRDYWEDIGTIKSFYEAN 368 (498)
Q Consensus 320 ~ll~~~~~~~~-df--------~~dii~~---------~i~~-~~I~~~~~~~~w~dIgt~~dy~~An 368 (498)
+.++...|... .+ ..+.++. ++++ .+++++.++++|.|||||++|+++.
T Consensus 199 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~ 266 (337)
T 2cu2_A 199 ELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF 266 (337)
T ss_dssp HHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHh
Confidence 55554322100 00 1233443 3443 6899999999999999999999984
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=224.12 Aligned_cols=239 Identities=13% Similarity=0.191 Sum_probs=171.1
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
++.|||||||.|||| | ||+|+||+|+ |||+|+++++.++|+++|+|+++ .+.+.+++.+ ++
T Consensus 2 ~~~aiIlA~G~stRl-p-----~K~L~~i~Gk-Pli~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~~--------~g-- 62 (252)
T 3oam_A 2 SFTVVIPARYQSTRL-P-----GKPLADIGGK-PMIQWVYEQAMQAGADRVIIATD--DERVEQAVQA--------FG-- 62 (252)
T ss_dssp CEEEEEECCCCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH--------TT--
T ss_pred ceEEEEecCcCCCCC-C-----CcceeeECCE-EHHHHHHHHHHhCCCCeEEEECC--HHHHHHHHHH--------cC--
Confidence 578999999999999 4 7999999999 99999999999999999999995 4777777752 23
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEec
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
++++...+. +..||++ +..+...+. ....+.|++++||. +...++.++++.|.+.++++++++.++
T Consensus 63 -~~v~~~~~~-------~~~Gt~~-~~~~~~~l~---~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v 130 (252)
T 3oam_A 63 -GVVCMTSPN-------HQSGTER-LAEVVAKMA---IPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEI 130 (252)
T ss_dssp -CEEEECCTT-------CCSHHHH-HHHHHHHTT---CCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEE
T ss_pred -CEEEEcCCC-------CCCcHHH-HHHHHHhcC---cCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeec
Confidence 334332222 2369988 444544442 01247899999998 446679999999998888999999988
Q ss_pred CCCCCCCc-----eEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhC
Q 010874 252 GESRASDY-----GLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (498)
Q Consensus 252 ~~~~~~~~-----g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~ 326 (498)
++ +..| |.+..|++|+++.|.+||.........-.. .....+++.++|+|+|++++|..+....
T Consensus 131 ~~--~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~~~~--------~~~~~~~~~n~GiY~~~~~~l~~~~~~~- 199 (252)
T 3oam_A 131 ED--EAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKAD--------KAIVQPLLRHIGIYAYRAGFINTYLDWQ- 199 (252)
T ss_dssp CC--HHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHHSSS--------CCCCSCEEEEEEEEEEETTHHHHHHHSC-
T ss_pred CC--HHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCcccccc--------ccccccceEEEEEEEcCHHHHHHHHcCC-
Confidence 76 3344 899999999999999997543211000000 0001257899999999999998775532
Q ss_pred CCCCchh--hhhHHHHhhcCceEEEEEc-ceEeecCCHHHHHHHHHHhhcc
Q 010874 327 PTSNDFG--SEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKE 374 (498)
Q Consensus 327 ~~~~df~--~dii~~~i~~~~I~~~~~~-~~w~dIgt~~dy~~An~~ll~~ 374 (498)
++..+.. -+.+..+-.+.+|.++..+ .+|.|||||+||.+|+..+.++
T Consensus 200 ~~~~e~~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 200 PSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp CCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred CCcccccchhHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 2211111 1233333345789998765 4689999999999999887654
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-24 Score=208.55 Aligned_cols=237 Identities=14% Similarity=0.189 Sum_probs=160.5
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
+++.|||||+|.||||. ||+|+||+|+ |||+|+++++.++|+++|+|+++ .+.+.+++. . ++
T Consensus 8 M~~~aIIlA~G~stRl~------~K~L~~i~Gk-Pli~~~l~~l~~~~i~~VvVvt~--~~~i~~~~~-~-------~g- 69 (256)
T 3tqd_A 8 MEFRVIIPARFDSTRLP------GKALVDIAGK-PMIQHVYESAIKSGAEEVVIATD--DKRIRQVAE-D-------FG- 69 (256)
T ss_dssp -CCEEEEECCCC---CT------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHH-H-------TT-
T ss_pred CCceEEEEcCCCCCCCC------CCCeeeECCc-hHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHH-H-------cC-
Confidence 46789999999999995 7999999999 99999999999999999999986 466766664 2 23
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHc-CCCeEEEEE
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDR-DADITISCA 249 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~-~ad~tv~~~ 249 (498)
++++...+ .+..||+. ++++...++ ....+.|+++.||. +. ..++..+++.|.+. ++++++++.
T Consensus 70 --~~v~~~~~-------~~~~Gt~~-i~~a~~~l~---~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~ 136 (256)
T 3tqd_A 70 --AVVCMTSS-------DHQSGTER-IAEAAVALG---FEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCT 136 (256)
T ss_dssp --CEEEECCT-------TCCSHHHH-HHHHHHHTT---CCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEE
T ss_pred --CeEEEeCC-------CCCCcHHH-HHHHHHHhC---cCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEee
Confidence 23333222 13468876 677766652 01247899999999 33 46789999999874 567888888
Q ss_pred ecCCC----CCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhh
Q 010874 250 AVGES----RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (498)
Q Consensus 250 ~~~~~----~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~ 325 (498)
++.++ ++..++ |.+|++|+++.|.+||.......... +.......+++...|+|.|++++|..+...
T Consensus 137 ~v~~~~~~~~p~~vk-vv~d~~g~~l~fsr~pip~~r~~~~~-------~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l- 207 (256)
T 3tqd_A 137 PITEVDELFNPHSTK-VVLNRRNYALYFSHAPIPWGRDTFSD-------KENLQLNGSHYRHVGIYAYRVGFLEEYLSW- 207 (256)
T ss_dssp ECCCHHHHTCTTSCE-EEECTTSBEEEEESSCSSCCTTTTTC-------GGGCCCSSCCEEEEEEEEEEHHHHHHHHHS-
T ss_pred EcCCHHHhhCCCccE-EEECCCCEEeEEecCCCCCCCccccc-------ccccccCCcceEEEEEEEcCHHHHHHHHhC-
Confidence 87542 222333 56889999999999986421100000 000001135789999999999999876442
Q ss_pred CCCCCchhh--hhHHHHhhcCceEEEEEcce-EeecCCHHHHHHHHH
Q 010874 326 YPTSNDFGS--EIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANM 369 (498)
Q Consensus 326 ~~~~~df~~--dii~~~i~~~~I~~~~~~~~-w~dIgt~~dy~~An~ 369 (498)
.++..+..+ +.+..+-.+.+|+++..+++ |.+||||+||..|+.
T Consensus 208 ~~s~lE~~e~leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~ 254 (256)
T 3tqd_A 208 DACPAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRA 254 (256)
T ss_dssp CCCHHHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHT
T ss_pred CCCcccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHH
Confidence 222111111 22343445679999999875 899999999999975
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-24 Score=209.31 Aligned_cols=239 Identities=15% Similarity=0.195 Sum_probs=165.9
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
+++.|||||||.||||. +|+|+||+|+ |||+|+++++.++|+++|+|+++ .+.+.+++. . ++
T Consensus 17 M~~~aIIlA~G~stRlp------~K~L~~i~Gk-Pmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~-~-------~g- 78 (264)
T 3k8d_A 17 MSFVVIIPARYASTRLP------GKPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVE-A-------AG- 78 (264)
T ss_dssp -CCEEEEECCSCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHH-H-------TT-
T ss_pred CceEEEEEcCCCCCCCC------CcceeeECCe-EHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHH-H-------cC-
Confidence 45899999999999992 5999999999 99999999999999999999985 466766664 2 23
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
++++...+ .|..||+. +..+...++ ....+.++++.||. +...++..+++.|.+.++++++++.+
T Consensus 79 --~~v~~~~~-------~~~~Gt~~-i~~~~~~l~---~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~ 145 (264)
T 3k8d_A 79 --GEVCMTRA-------DHQSGTER-LAEVVEKCA---FSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVP 145 (264)
T ss_dssp --CEEEECCT-------TCCSHHHH-HHHHHHHHT---CCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred --CEEEEecC-------CCCCCHHH-HHHHHHHhc---cCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEE
Confidence 23333222 13468877 777766653 11347899999998 44567999999998888899999998
Q ss_pred cCCCC-CCCce--EEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC
Q 010874 251 VGESR-ASDYG--LVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (498)
Q Consensus 251 ~~~~~-~~~~g--~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~ 327 (498)
+.++. ..+.+ .+.+|++|+++.|.+||..........+. .....+++.++|+|+|++++|..+... .+
T Consensus 146 v~d~~~~~~p~~vkVv~d~~g~~l~fsr~~ip~~r~~~~~~~--------~~~~~~~~~~~GiY~y~~~~l~~~~~~-~~ 216 (264)
T 3k8d_A 146 IHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGL--------ETVGDNFLRHLGIYGYRAGFIRRYVNW-QP 216 (264)
T ss_dssp CCSHHHHTCTTSCEEEECTTSBEEEEESSCCSCCHHHHHHCS--------SCCCSCCEEECSEEEEEHHHHHHHHHS-CC
T ss_pred cCCHHHccCCCceEEEECCCCeEEEEecCCCCCCCccccccc--------cccCCcceEEEEEEEECHHHHHHHHhC-CC
Confidence 87521 11222 25578999999999998632110000000 000124789999999999999887543 22
Q ss_pred CCCchhh--hhHHHHhhcCceEEEEEcc-eEeecCCHHHHHHHHHHh
Q 010874 328 TSNDFGS--EIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 328 ~~~df~~--dii~~~i~~~~I~~~~~~~-~w~dIgt~~dy~~An~~l 371 (498)
+..+..+ +.+..+-...+|+++...+ +|.+|+||+||..|+..|
T Consensus 217 ~~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l 263 (264)
T 3k8d_A 217 SPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 263 (264)
T ss_dssp CHHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC
T ss_pred ChhhhHHHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHh
Confidence 2111111 2234334457899986654 589999999999998654
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-23 Score=197.04 Aligned_cols=224 Identities=16% Similarity=0.189 Sum_probs=154.4
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
++.|||||||.|+||+ ||+|+|++|+ |||+|+++++.++ +++|+|++++ +++.+++.+ +
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~i~g~-pli~~~l~~~~~~-~~~i~v~~~~--~~i~~~~~~--------~--- 60 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK------EKPLKNLLGK-PLIRWVVEGLVKT-GERVILATDS--ERVKEVVED--------L--- 60 (234)
T ss_dssp CEEEEEECCSCCTTTT------TGGGCEETTE-EHHHHHHHHHHTT-TSCEEEEESC--HHHHHHHTT--------T---
T ss_pred ceEEEEEcCCCCCCCC------CCcceeECCE-EHHHHHHHHHHHh-CCEEEEECCh--HHHHHHHHh--------c---
Confidence 4789999999999997 7999999999 9999999999999 9999999976 667666641 1
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCCeEEEEEec
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
+.++...+. +..|+++++. +...+ ..+.+++++||+ +++ .++.++++.|.+.++.+++.....
T Consensus 61 -~~~~~~~~~-------~~~g~~~~~~-~~~~~------~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 125 (234)
T 2y6p_A 61 -CEVFLTPSD-------LPSGSDRVLY-VVRDL------DVDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDK 125 (234)
T ss_dssp -SEEEECCTT-------CCSHHHHHHH-HHTTC------CCSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECS
T ss_pred -eEEEECCcc-------cccchHHHHH-HHHhC------CCCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCH
Confidence 122222121 1258888763 33222 347899999999 776 679999999988774445444321
Q ss_pred CC-CCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCC
Q 010874 252 GE-SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (498)
Q Consensus 252 ~~-~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~ 330 (498)
.. ..+..++ +..+++|+|..|.|||....... . ..+.+.++|+|+|+++.|..+.+.. +...
T Consensus 126 ~~~~~~~~~~-~~~~~~g~v~~~~e~~~~~~~~~--------------~-~~~~~~~~giy~~~~~~l~~~~~~~-~~~~ 188 (234)
T 2y6p_A 126 EAYERPEDVK-VVLDREGYALYFSRSPIPYFRKN--------------D-TFYPLKHVGIYGFRKETLMEFGAMP-PSKL 188 (234)
T ss_dssp GGGGCTTSCE-EEECTTSBEEEEESSCCSCCSSC--------------C-SSCCEEEEEEEEEEHHHHHHHHHSC-CCHH
T ss_pred HHhcCCCceE-EEEcCCCCEeeeecCCCCccccc--------------c-cceeeEEEEEEEcCHHHHHHHHhCC-CCcc
Confidence 11 1223344 34577899999999875311000 0 0125679999999999987765421 1111
Q ss_pred ---chhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHh
Q 010874 331 ---DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 331 ---df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~l 371 (498)
++.. .+..+.++.++.++..+++|.||+||+||..|+..+
T Consensus 189 ~~~d~~~-~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~ 231 (234)
T 2y6p_A 189 EQIEGLE-QLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKL 231 (234)
T ss_dssp HHHHTCT-HHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHC
T ss_pred chhhHHH-HHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHH
Confidence 1111 233333467999999999999999999999998765
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-23 Score=198.97 Aligned_cols=229 Identities=16% Similarity=0.246 Sum_probs=159.2
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCC-CeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGI-NKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi-~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
++.|||||||.|+|| | ||+|+|++|+ |||+|+++.+.++|+ ++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~aiIlA~G~~~R~-~-----~K~l~~i~g~-pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~~--------~~- 63 (245)
T 1h7e_A 2 KAVIVIPARYGSSRL-P-----GKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQA--------FG- 63 (245)
T ss_dssp CEEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHH--------TT-
T ss_pred CeEEEEEcCCcCCCC-C-----CCcccccCCc-hHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHHH--------cC-
Confidence 478999999999999 6 8999999999 999999999999996 999999986 667666642 22
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee--eecCHHHHHHHHHHc-CCCeEEEEE
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDR-DADITISCA 249 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l--~~~dl~~ll~~h~~~-~ad~tv~~~ 249 (498)
++++...+. +..|+++++..+. .+ ..+.+++++||+. ...++..+++.|.+. ++++++++.
T Consensus 64 --~~~~~~~~~-------~~~g~~~~~~~~~-~~------~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~ 127 (245)
T 1h7e_A 64 --GKAIMTRND-------HESGTDRLVEVMH-KV------EADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCH 127 (245)
T ss_dssp --CEEEECCSC-------CSSHHHHHHHHHH-HS------CCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred --CeEEeCCCc-------cCCcHHHHHHHHH-hC------CCCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEee
Confidence 344432221 2258877664432 22 2478999999993 346789999999888 788888777
Q ss_pred ecCCCCCCCceE--EEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC
Q 010874 250 AVGESRASDYGL--VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (498)
Q Consensus 250 ~~~~~~~~~~g~--v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~ 327 (498)
+.+.....+++. +..+++|++..|.+++....... ...+.+.++|+|+|+++.|..++ . .+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~r~~---------------~~~~~~~~~g~y~~~~~~l~~~~-~-~~ 190 (245)
T 1h7e_A 128 AISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNA---------------EKARYLKHVGIYAYRRDVLQNYS-Q-LP 190 (245)
T ss_dssp EECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTTG---------------GGCCEEEEEEEEEEEHHHHHHGG-G-SC
T ss_pred cCCHHHhcCCCCcEEEECCCCcEEEeecCCCCCCccc---------------ccCceeEEEEEEEcCHHHHHHHH-h-CC
Confidence 762111112222 23367899999988754311000 00125679999999999887665 2 12
Q ss_pred CCCchhhhhHHHH---hhcCceEEEEEcceEeecCCHHHHHHHHHHhhc
Q 010874 328 TSNDFGSEIIPAA---IMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 328 ~~~df~~dii~~~---i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~ 373 (498)
......++.++.+ ..+.++.++..+++|.||+||+||..|+..+..
T Consensus 191 ~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~~ 239 (245)
T 1h7e_A 191 ESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQ 239 (245)
T ss_dssp CCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHH
T ss_pred CCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 1111234444432 235789999999999999999999999887643
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-23 Score=198.33 Aligned_cols=214 Identities=16% Similarity=0.221 Sum_probs=136.4
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
|++|.|||||||.|+||+|+ ||+|+|++|+ |||+|+++++.++ +++|+|++ ++.+++.+++.+. ++
T Consensus 16 m~~~~~iIlA~G~g~R~~~~----~K~l~~i~g~-pli~~~l~~l~~~-~~~i~vv~-~~~~~~~~~~~~~-------~~ 81 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV----PKPLVRVGGC-EIILRTMKLLSPH-VSEFIIVA-SRYADDIDAFLKD-------KG 81 (232)
T ss_dssp CCCEEEEEEECC------CC----CGGGCEETTE-EHHHHHHHHHGGG-EEEEEEEE-STTHHHHHHHHTT-------SC
T ss_pred cccceEEEECCcCcCcCCCC----CcEEeEECCE-EHHHHHHHHHHHh-CCEEEEEe-CChHHHHHHHHHh-------cC
Confidence 67799999999999999986 9999999999 9999999999998 99999999 7777887776432 22
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCH-HHHHHHHHHcCCCeEEEEEe
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl-~~ll~~h~~~~ad~tv~~~~ 250 (498)
..+.++.... +..|++++++.++.+++ +++++++||+.++.++ ..+++. . . +++...
T Consensus 82 -~~~~~v~~~~--------~~~g~~~~i~~a~~~~~-------~~~lv~~~D~p~~~~~~~~l~~~----~-~-~~~~~~ 139 (232)
T 2xme_A 82 -FNYKIVRHDR--------PEKGNGYSLLVAKNHVE-------DRFILTMGDHVYSQQFIEKAVRG----E-G-VIADRE 139 (232)
T ss_dssp -CCEEEEECSC--------GGGCHHHHHHTTGGGCC-------SSEEEEETTEEECHHHHHHHTTC----C-E-EEEESS
T ss_pred -CcEEEEECCC--------CCCCcHHHHHHHHHHCC-------CCEEEEcCCcccCHHHHHHHHhC----C-C-cEEEcc
Confidence 1255554221 22699999998865442 6799999999875443 333332 1 1 222211
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCC
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~ 330 (498)
.......+++.+..+ +|++..|.|++.. .+.+++|+|+|++++|..+ +.......
T Consensus 140 ~~~~~~~~~~~v~~~-~g~v~~~~~~~~~-----------------------~~~~~~g~~~~~~~~~~~l-~~~~~~g~ 194 (232)
T 2xme_A 140 PRFVDIGEATKIRVE-DGRVAKIGKDLRE-----------------------FDCVDTGFFVLDDSIFEHA-EKLRDREE 194 (232)
T ss_dssp CSSSCTTTSCEEEEE-TTEEEEEETTCSS-----------------------CSEEEEEEEEECTTHHHHH-GGGTTSSC
T ss_pred ccccCCCcceEEEEc-CCEEEEeecCCCC-----------------------cceEEEEEEEECHHHHHHH-HHHHhcCh
Confidence 111123457777666 6899999887642 2467899999999998744 43322221
Q ss_pred chhhhhHHHHhhcCceEEEEEc-ceEeecCCHHHHHHHHHH
Q 010874 331 DFGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMA 370 (498)
Q Consensus 331 df~~dii~~~i~~~~I~~~~~~-~~w~dIgt~~dy~~An~~ 370 (498)
.. +..+++.+++.++.++ ++|.||+||+||..|+..
T Consensus 195 ~~----l~~ll~~~~v~~~~~~~~~~~dI~tpeDl~~a~~~ 231 (232)
T 2xme_A 195 IP----LSEIVKLARLPVTYVDGELWMDVDTKEDVRRANRA 231 (232)
T ss_dssp CC----HHHHHHHHTCBEEECCSCCEEEEECC---------
T ss_pred hH----HHHHHHcCCEEEEEECCCCEEeCCCHHHHHHHHhh
Confidence 12 3334444467777775 689999999999988764
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=190.77 Aligned_cols=236 Identities=14% Similarity=0.218 Sum_probs=161.7
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
+|.|||||||.|+||. +|+|+|++|+ |||+|+++++.++|+++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~~~gk-pli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~~--------~~-- 62 (262)
T 1vic_A 2 SFTVIIPARFASSRLP------GKPLADIKGK-PMIQHVFEKALQSGASRVIIATDN--ENVADVAKS--------FG-- 62 (262)
T ss_dssp CCEEEEECCCCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHH--------TT--
T ss_pred CcEEEEEcCCCCCCCC------CCccccCCCe-EHHHHHHHHHHhCCCceEEEECCc--HHHHHHHHh--------cC--
Confidence 4789999999999995 3999999999 999999999999999999999975 556666642 22
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEec
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
+.++...+. +..|++ .+..+...++ ....+.+++++||. +...++.++++.|.+.++++++++.+.
T Consensus 63 -~~~~~~~~~-------~~~g~~-~~~~~~~~l~---~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~ 130 (262)
T 1vic_A 63 -AEVCMTSVN-------HNSGTE-RLAEVVEKLA---IPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKI 130 (262)
T ss_dssp -CEEEECCCS-------SCCHHH-HHHHHHHHTT---CCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred -CEEEECCcc-------ccCChH-HHHHHHHHhc---cCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 333332111 124776 4555554443 11246799999998 345678999999988888888888887
Q ss_pred CCC-C--CCCceEEEECCCCCEEEEEeCCCccccccc-------cccccccCCCccccccCCcceeeeEEEEcHHHHHHH
Q 010874 252 GES-R--ASDYGLVKIDNMGRIAQFAEKPSGANLKAM-------QVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321 (498)
Q Consensus 252 ~~~-~--~~~~g~v~~d~~grV~~~~EKp~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~l 321 (498)
.+. + ...++.+..+++|+++.|.+++........ ..++ | ..+..++|+|+|+++.|..+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~~~~~~~~~~~~~------p-----~~~~~~~giy~~~~~~l~~~ 199 (262)
T 1vic_A 131 HDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQL------S-----DAYLRHIGIYAYRAGFIKQY 199 (262)
T ss_dssp CCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTCSCGGGCCC------C-----TTCEEEEEEEEEEHHHHHHH
T ss_pred CCHHHhcCCCceEEEECCCCCEeeeecCCCCcCCcccccccccccccc------c-----cceEEEEEEEEeeHHHHHHH
Confidence 652 0 123455555788999999887632110000 0000 1 12578999999999988765
Q ss_pred HHhhCCCCCc---hhhhhHHHHh-hcCceEEEEEc-ceEeecCCHHHHHHHHHHhhcc
Q 010874 322 LRWRYPTSND---FGSEIIPAAI-MEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKE 374 (498)
Q Consensus 322 l~~~~~~~~d---f~~dii~~~i-~~~~I~~~~~~-~~w~dIgt~~dy~~An~~ll~~ 374 (498)
... .+...+ +... +. ++ .+.++.++..+ ++|.||+||+||..|+..+...
T Consensus 200 ~~~-~~~~~~~~e~~~~-~~-~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~~ 254 (262)
T 1vic_A 200 VQW-APTQLENLEKLEQ-LR-VLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAAN 254 (262)
T ss_dssp HHS-CCCHHHHHHTCTT-HH-HHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred HhC-CCCchhhhhhHHH-HH-HHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 432 111111 1111 22 34 45689999998 7999999999999999887654
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-21 Score=188.15 Aligned_cols=237 Identities=14% Similarity=0.147 Sum_probs=161.6
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHH-HHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPM-SNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L-~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
+.|||||+|.||||. +|+|+||+|+ |||+|++ +.+.++++++|+|+++. +.+.+++. .++
T Consensus 2 ~~aiIlA~G~stR~~------~K~L~~i~Gk-Pli~~~i~~~~~~~~~~~vvVvt~~--~~i~~~~~--------~~g-- 62 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP------GKPLLLIHDR-PMILRVVDQAKKVEGFDDLCVATDD--ERIAEICR--------AEG-- 62 (253)
T ss_dssp EEEEEECCSCCTTST------TGGGSEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHH--------TTT--
T ss_pred eEEEEEeCCCCCCCC------CCceeeECCe-EhHHHHHHHHHHhcCCCEEEEECCH--HHHHHHHH--------HcC--
Confidence 469999999999997 3999999999 9999999 99998999999999963 66766654 123
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHc-CCCeEEEEEe
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDR-DADITISCAA 250 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~-~ad~tv~~~~ 250 (498)
++++...+. +..|| +++..+...+.. ...+.++++.||. +. ...+..+++.|.+. ++++..++.+
T Consensus 63 -~~v~~~~~~-------~~~Gt-~~i~~a~~~~~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~ 130 (253)
T 4fcu_A 63 -VDVVLTSAD-------HPSGT-DRLSEVARIKGW---DADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEP 130 (253)
T ss_dssp -CCEEECCTT-------CCCHH-HHHHHHHHHHTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEE
T ss_pred -CeEEEeCCC-------CCChH-HHHHHHHHhcCc---CCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEE
Confidence 223221121 12477 478777766631 1247899999999 44 46789999999876 3455444555
Q ss_pred cCC----CCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhC
Q 010874 251 VGE----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (498)
Q Consensus 251 ~~~----~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~ 326 (498)
..+ .++..+ -+..|++|+++.|.++|..........+. ......++.++|+|+|++++|..+... .
T Consensus 131 ~~~~~~~~~p~~~-kvv~d~~g~~l~fsr~~ip~~r~~~~~~~--------~~~~~~~~~~~GiY~f~~~~l~~~~~~-~ 200 (253)
T 4fcu_A 131 IHALDEFQRDSIV-KVVMSKQNEALYFSRATIPYDRDGAKRDE--------PTLHTQAFRHLGLYAYRVSLLQEYVTW-E 200 (253)
T ss_dssp CCCHHHHHCTTSC-EEEECTTSBEEEEESSCCSCCTTTSSSSS--------CCCCSCCEEEEEEEEEEHHHHHHHTTS-C
T ss_pred cCCHHHccCCCcc-EEEECCCCeEEEecCCCCCCCCCcccccc--------cccccceeEEEEEEEeCHHHHHHHHhC-C
Confidence 432 123344 45788899999999987643211000000 000124678999999999999877532 1
Q ss_pred CCCCch-hhh---hHHHHhhcCceEEEEEcce-EeecCCHHHHHHHHHHhhcc
Q 010874 327 PTSNDF-GSE---IIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMALTKE 374 (498)
Q Consensus 327 ~~~~df-~~d---ii~~~i~~~~I~~~~~~~~-w~dIgt~~dy~~An~~ll~~ 374 (498)
++ .+ ..| .+..+-.+.+|+++..+++ |.+|+||+||..|+..+.++
T Consensus 201 ~~--~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r 251 (253)
T 4fcu_A 201 MG--KLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES 251 (253)
T ss_dssp CC--HHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred CC--cccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 21 12 122 2333335679999999999 99999999999998766544
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=9e-21 Score=184.52 Aligned_cols=231 Identities=13% Similarity=0.120 Sum_probs=155.4
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~ 170 (498)
|+++.|||||||.|+||++ ..+||+|+|++|+ |||+|+++++.+++ +++|+|++++......+++.+.|...
T Consensus 1 M~~~~aIIlAaG~g~Rm~~--~~~pK~l~~l~Gk-pll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~---- 73 (246)
T 3f1c_A 1 MSLIYAQILAGGKGTRMGN--VSMPKQFLPLNGK-PIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISD---- 73 (246)
T ss_dssp -CCEEEEEECC-----C-C--SSCCGGGSEETTE-EHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCC----
T ss_pred CCccEEEEECCccccccCC--CCCCCeEEEECCe-eHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCC----
Confidence 4568999999999999987 5789999999999 99999999999997 99999999977654333333344211
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhc-CCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEE
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN-RNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITIS 247 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~-~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~ 247 (498)
..+.++.. + .+..++++.++.++.+... ...+.++++.||. +....+.++++.|.+.++. +.
T Consensus 74 --~~~~~~~~-~----------~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~--i~ 138 (246)
T 3f1c_A 74 --DRIVVIEG-G----------EDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAV--DT 138 (246)
T ss_dssp --TTEEEEEC-C----------SSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEE--EE
T ss_pred --CCEEEECC-C----------CchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCE--EE
Confidence 12455432 1 3678899999888863100 1247899999998 4556789999999887654 34
Q ss_pred EEecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC
Q 010874 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (498)
Q Consensus 248 ~~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~ 327 (498)
+.++.+ .++..++++.+..+.+|+.. +..-..++|+.+.|.+.++...+
T Consensus 139 ~~~~~d------~i~~~~~~~~v~~~~~r~~l-------------------------~~~qtpq~f~~~~L~~a~~~~~~ 187 (246)
T 3f1c_A 139 VIEALD------TIVESSNHEVITDIPVRDHM-------------------------YQGQTPQSFNMKKVFNHYQNLTP 187 (246)
T ss_dssp EEECSS------CEEECSSSSBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTSCH
T ss_pred EEeccc------eEEEecCCCeEEEecChHHh-------------------------hhhcCCceeEHHHHHHHHHHHHH
Confidence 455543 34444455666655555431 11224579999988877764311
Q ss_pred CCCchhhhhHHHHhh-cCceEEEEEcceEeecCCHHHHHHHHHHhhccC
Q 010874 328 TSNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (498)
Q Consensus 328 ~~~df~~dii~~~i~-~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~ 375 (498)
....+++|.+..+.. ..+|..+..+.+|.+|+||+||..|+..+.++.
T Consensus 188 ~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~ 236 (246)
T 3f1c_A 188 EKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERI 236 (246)
T ss_dssp HHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHHC
T ss_pred cCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhccc
Confidence 112345666655544 468999999999999999999999998886653
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=178.67 Aligned_cols=222 Identities=13% Similarity=0.061 Sum_probs=139.9
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc-CCCeEEEEeccCc-hhHHHHHHhhccCCCCcCCC
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~-~~l~~hl~~~~~~~~~~~~~ 172 (498)
|.|||||||.|+||++ ..+||+|+|++|+ |||+|+++++.++ ++++|+|+++++. +.+.+++. .| + ..+.
T Consensus 3 ~~~iIlA~G~g~R~~~--~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~-~~-~--~~~~- 74 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGI--SNLPKQFLELGDR-PILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVD-KY-L--PLYK- 74 (236)
T ss_dssp EEEEEEEC-------------CGGGSEETTE-EHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHH-HH-C--GGGG-
T ss_pred eEEEEeCCccccccCC--CCCCCeeeeeCCc-cHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHH-hc-c--cccc-
Confidence 7899999999999998 6799999999999 9999999999998 5999999999887 44555543 22 1 0111
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcC--CCCeEEEEcCce-e-eecCHHHHHHHHHHcCCCeEEEE
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR--NIENVAILCGDH-L-YRMDYMDFIQSHVDRDADITISC 248 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~--~~e~~Lvl~GD~-l-~~~dl~~ll~~h~~~~ad~tv~~ 248 (498)
..+.... . + .|++++++.++..+++. .. ..+.++++.||+ + ...++..+++.|.+.++ .+++
T Consensus 75 ~~~~~~~--~--~-------~~~~~~i~~~l~~~~~~-~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~~ 140 (236)
T 2vsh_A 75 ERIIITK--G--G-------ADRNTSIKNIIEAIDAY-RPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDTV 140 (236)
T ss_dssp GGEEEEE--C--C-------SSHHHHHHHHHHHHHHH-SCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEEE
T ss_pred CceEEEC--C--C-------CchHHHHHHHHHHHHhh-ccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEEE
Confidence 0122221 1 0 37889999998777421 01 136789999999 4 45679999999987654 3444
Q ss_pred EecCCCCCCCceEEEECCCC-CEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC
Q 010874 249 AAVGESRASDYGLVKIDNMG-RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (498)
Q Consensus 249 ~~~~~~~~~~~g~v~~d~~g-rV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~ 327 (498)
.+..+ + +..+++| ++..+.|++.. ......|+|+++.|..+++....
T Consensus 141 ~~~~~--~-----~~~~~~g~~~~~~~~~~~~-------------------------~~~~~p~~f~~~~l~~~~~~~~~ 188 (236)
T 2vsh_A 141 VEAVD--T-----IVESTNGQFITDIPNRAHL-------------------------YQGQTPQTFRCKDFMDLYGSLSD 188 (236)
T ss_dssp EECCS--C-----EEECSSSSBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTCCH
T ss_pred Eeccc--c-----EEEeCCCCeeeeecChHHh-------------------------eeecCCcEecHHHHHHHHHHHHh
Confidence 55543 1 2334567 77766655321 11123789999988766653211
Q ss_pred CCCch-hhhhHHHHhh-cCceEEEEEcceEeecCCHHHHHHHHHHh
Q 010874 328 TSNDF-GSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 328 ~~~df-~~dii~~~i~-~~~I~~~~~~~~w~dIgt~~dy~~An~~l 371 (498)
. ..+ ..+.+..+.. ..++..+..+++|.||+||+||..|+..+
T Consensus 189 ~-g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~ 233 (236)
T 2vsh_A 189 E-EKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMI 233 (236)
T ss_dssp H-HHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHT
T ss_pred c-CCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHh
Confidence 1 011 2333333333 35788888888999999999999998765
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=172.41 Aligned_cols=214 Identities=15% Similarity=0.083 Sum_probs=149.2
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchh-HHHHHHhhccCCCCcCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSAS-LNRHIARTYFGNGTNFG 171 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~-l~~hl~~~~~~~~~~~~ 171 (498)
+|.+||||||.||||+ ..+||+|+|++|+ |||+|+++.+.+++ +++|+|++++.... +.+++ . +
T Consensus 2 ~~~~vIlA~G~g~R~~---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~-----~-----~ 67 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLR---AGRPKAFVTLGGT-PLLEHALSGLRASGVIDRIVIAVPPALTDESKLVF-----G-----G 67 (223)
T ss_dssp CEEEEEECCCCCGGGT---SSSCGGGSEETTE-EHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHT-----C-----B
T ss_pred ceEEEEECCccCcccC---CCCCCeeeEECCe-EHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHh-----c-----c
Confidence 4789999999999998 4689999999999 99999999999988 99999999987543 32222 1 0
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeEEEEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
..+.++.. . .+.+++++.++..++ ..+.++++.||+ +. ..++..+++.|. .+.+.++.+.
T Consensus 68 -~~v~~~~~--~---------~~~~~~i~~al~~~~-----~~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~ 129 (223)
T 2xwl_A 68 -EDSVIVSG--G---------VDRTESVALALEAAG-----DAEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGL 129 (223)
T ss_dssp -TTEEEEEC--C---------SSHHHHHHHHHTTCT-----TCSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEE
T ss_pred -CCeEEEcC--C---------CCHHHHHHHHHHhcC-----CCCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEE
Confidence 12444431 1 367888988875552 246789999998 33 457899999883 3456677666
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCC
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~ 329 (498)
+..+ +..+ .|++|++..+.|++.. ......|+|+++.+..+++...
T Consensus 130 ~~~d--~~~~----~~~~g~~~~~~e~~~l-------------------------~~~~~p~~f~~~~l~~~~~~~~--- 175 (223)
T 2xwl_A 130 APAD--TIKA----VDANGAVLGTPERAGL-------------------------RAVQTPQGFHADVLRRAYARAT--- 175 (223)
T ss_dssp CCSS--CEEE----ECTTSBEEECCCGGGE-------------------------EEECSCEEEEHHHHHHHHTTCC---
T ss_pred eccc--ceEE----EcCCCcEEeecChHHh-------------------------eeeeCCcccCHHHHHHHHHHhh---
Confidence 6554 2122 3677899888776421 1112358899988876654321
Q ss_pred CchhhhhHHHHhh-cCceEEEEEcceEeecCCHHHHHHHHHHhhc
Q 010874 330 NDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 330 ~df~~dii~~~i~-~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~ 373 (498)
.++.++....+.. ..++..+..+++|.||+||+||..|+..+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~ 220 (223)
T 2xwl_A 176 AGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLAH 220 (223)
T ss_dssp SCCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHhh
Confidence 2333444443333 3578888888899999999999999876654
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.3e-19 Score=168.98 Aligned_cols=220 Identities=10% Similarity=0.064 Sum_probs=134.4
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
++|.|||||||.|+||++ .+||+|+|++|+ |||+|+++.+.+++ +++|+|+++++.+.+.+ +.+ + +
T Consensus 5 ~~~~aiIlA~G~g~R~~~---~~~K~l~~~~gk-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~-~-~------ 71 (231)
T 1vgw_A 5 RKNIALIPAAGIGVRFGA---DKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQT-A-F------ 71 (231)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHH-H-C------
T ss_pred CceEEEEEcccccccCCC---CCCceEeEECCe-EHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHh-c-C------
Confidence 458999999999999996 689999999999 99999999999885 99999999987766655 532 2 1
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhc-CCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeEEEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN-RNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISC 248 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~-~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~tv~~ 248 (498)
...+.++. .. .|++++++.++..+.+... ...+.++++.||. +. ...+..+++.|.+.+.. .+++
T Consensus 72 ~~~i~~~~-~~----------~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~-~~~~ 139 (231)
T 1vgw_A 72 PQVRVWKN-GG----------QTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEG-GILA 139 (231)
T ss_dssp TTSEEECC-CC----------SSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTC-EEEE
T ss_pred CCceEEEc-CC----------CcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCe-EEEE
Confidence 01244432 11 4899999999877742000 0247899999997 33 34588999988665422 3444
Q ss_pred EecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC
Q 010874 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (498)
Q Consensus 249 ~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~ 328 (498)
.+..+. +..+++|++....++ .. .+.....|+|+.+.|..+++.....
T Consensus 140 ~~~~~~-------~~~~~~g~i~~~~~~---~~----------------------~~~~~~p~~f~~~~l~~~~~~~~~~ 187 (231)
T 1vgw_A 140 VPVADT-------LKRAESGQISATVDR---SG----------------------LWQAQTPQLFQAGLLHRALAAENLG 187 (231)
T ss_dssp EECCSC-------EEEESSSBEEEEECC---TT----------------------EEEEEEEEEEEHHHHHHHHHC----
T ss_pred eecccc-------eEEeCCCceEecCCh---HH----------------------heeeeCCcEecHHHHHHHHHHHhhc
Confidence 554331 111245665543222 10 1122248999999887766542211
Q ss_pred CCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHh
Q 010874 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 329 ~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~l 371 (498)
.......++.. ...++..+..++.|.||+||+||..|+..+
T Consensus 188 g~~~~~~~~~~--~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l 228 (231)
T 1vgw_A 188 GITDEASAVEK--LGVRPLLIQGDARNLKLTQPQDAYIVRLLL 228 (231)
T ss_dssp CCCSHHHHHHT--TTCCCEEEECCTTCCCCCSHHHHHHHHHHC
T ss_pred CCCcHHHHHHH--cCCCEEEEECCccccCcCCHHHHHHHHHHH
Confidence 10001122221 135788887778899999999999997654
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=171.98 Aligned_cols=216 Identities=16% Similarity=0.125 Sum_probs=146.9
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
++.|||||||.|+||+ ||+|+|++|+ |||+|+++.+.+++ +++|+|++++ +.+.+++. . ++
T Consensus 4 ~~~aiIlA~G~g~R~~------~K~l~~i~gk-pll~~~l~~~~~~~~~~~ivvv~~~--~~i~~~~~-~-------~~- 65 (228)
T 1ezi_A 4 QNIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAK-N-------FG- 65 (228)
T ss_dssp EEEEEEECCSSCSSST------TTTTCEETTE-EHHHHHHHHHHHHCCCSEEEEEESC--HHHHHHHH-H-------TT-
T ss_pred ceEEEEecCCCCCCCC------CcccceeCCc-CHHHHHHHHHHhCCCCCEEEEECCC--HHHHHHHH-H-------cC-
Confidence 4679999999999998 7999999999 99999999999988 7999999964 55555553 2 22
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee--eecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l--~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
++++....... .+..|++++++.++..++ ...+.++++.||.. ...++..+++.|.+.++++++.+.+
T Consensus 66 --~~~~~~~~~~~----~~~~g~~~sv~~~l~~~~----~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~ 135 (228)
T 1ezi_A 66 --VEVVLRPAELA----SDTASSISGVIHALETIG----SNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACP 135 (228)
T ss_dssp --CEEEECCC----------CHHHHHHHHHHHHHT----CCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEE
T ss_pred --CEEEeCchHHc----CCCCChHHHHHHHHHHhC----CCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 22222111000 012588999999987773 12468999999983 3457899998887777788888877
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCC-ccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCC
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPS-GANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~ 329 (498)
..+. + ++...+|++|++..|.++.. .+... . ....+..++|+|++++..|...++
T Consensus 136 ~~~~-p--~~~~~~~~~g~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~giy~~~~~~l~~~~~------ 191 (228)
T 1ezi_A 136 MEHH-P--LKTLLQINNGEYAPMRHLSDLEQPRQ--------------Q-LPQAFRPNGAIYINDTASLIANNC------ 191 (228)
T ss_dssp CSSC-T--TSCEEECC--CEEESSCHHHHTCCGG--------------G-SCCEEEEEEEEEEEEHHHHHHHTS------
T ss_pred cCCC-c--ceeeEEcCCCcEeeccccccccCCcc--------------c-CchhheeeeEEEEEeHHHHhhCCc------
Confidence 7641 2 33333477889988866210 00000 0 001235678999999987754310
Q ss_pred CchhhhhHHHHhhcCceEEEEEc-ceEeecCCHHHHHHHHHHhh
Q 010874 330 NDFGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 330 ~df~~dii~~~i~~~~I~~~~~~-~~w~dIgt~~dy~~An~~ll 372 (498)
+ ...++.++..+ .+|.||+||+||..|+..+-
T Consensus 192 --~---------~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~ 224 (228)
T 1ezi_A 192 --F---------FIAPTKLYIMSHQDSIDIDTELDLQQAENILN 224 (228)
T ss_dssp --S---------CCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC
T ss_pred --c---------cCCceEEEEeCcccccCCCCHHHHHHHHHHHH
Confidence 0 14567777776 58999999999999987654
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=173.62 Aligned_cols=221 Identities=13% Similarity=0.088 Sum_probs=140.6
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHhhccCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~ 170 (498)
|++|.|||||||.|+||+ ..+||+|+|++|+ |||+|+++++.++ ++++|+|++++..+++.+++.. .+
T Consensus 2 ~~~~~aiIlAaG~g~R~~---~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~-------~~ 70 (228)
T 2yc3_A 2 EKSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEE-------SI 70 (228)
T ss_dssp TTCEEEEEECCCCC----------CGGGSEETTE-EHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTT-------TS
T ss_pred CcceEEEEECCccccccC---CCCCccEeEECCE-EHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHH-------hC
Confidence 356899999999999997 3579999999999 9999999999998 8999999999887666554432 22
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-e-eecCHHHHHHHHHHcCCCeEEEE
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-L-YRMDYMDFIQSHVDRDADITISC 248 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l-~~~dl~~ll~~h~~~~ad~tv~~ 248 (498)
+ ..+.++.. . .|..++++.++..+++ ..+.++++.||. + ...++..+++.|.+.++ ++++
T Consensus 71 ~-~~v~~~~~--~---------~~~~~sv~~al~~~~~----~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~--~i~~ 132 (228)
T 2yc3_A 71 D-VDLSFAIP--G---------KERQDSVYSGLQEIDV----NSELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLG 132 (228)
T ss_dssp S-SEEEEECC--C---------SSHHHHHHHHHTTSCT----TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEE
T ss_pred C-CcEEEECC--C---------CCHHHHHHHHHHhhcc----CCCEEEEecCCCccCCHHHHHHHHHHHHhcCc--eEEE
Confidence 2 12444431 1 3888999998766531 236788999997 4 34568999999877654 4545
Q ss_pred EecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC
Q 010874 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (498)
Q Consensus 249 ~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~ 328 (498)
.+..+ .+..+++++++..+.+++. .....+ .|+|+.+.|.+.++.....
T Consensus 133 ~~~~~------~~~~~~~~~~v~~~~~~~~------------------------~~~~~~-~~~f~~~~l~~~~~~~~~~ 181 (228)
T 2yc3_A 133 VPAKA------TIKEVNSDSLVVKTLDRKT------------------------LWEMQT-PQVIKPELLKKGFELVKSE 181 (228)
T ss_dssp EECCS------CCCCBCTTSCBCCCCSCCC------------------------CEEEEE-EEEECHHHHHHHHHHHHHH
T ss_pred Eeccc------eEEEEcCCCceEEecCccc------------------------eEEEeC-CcEEEHHHHHHHHHHHHhc
Confidence 55433 1112344455543222111 022333 8999998776665431111
Q ss_pred CCchhhhhHHHHhh-cCceEEEEEcceEeecCCHHHHHHHHHHhhc
Q 010874 329 SNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 329 ~~df~~dii~~~i~-~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~ 373 (498)
. .+..+.+..+.+ ..++..+..+..|.||+||+||..|+..+..
T Consensus 182 ~-~~~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~ 226 (228)
T 2yc3_A 182 G-LEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSE 226 (228)
T ss_dssp T-CCCCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHTC
T ss_pred C-CCcccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHhh
Confidence 1 123444444443 3567554445679999999999999876643
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-20 Score=179.37 Aligned_cols=200 Identities=13% Similarity=0.112 Sum_probs=141.2
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
+|.+||||||. |||.+.+...||+|+|++|+ |||+|+++++..+++ +|+|++.. +++ +.++ +
T Consensus 2 ~~~~vIlAaG~-tRl~~r~~~~~K~l~~i~g~-pll~~~l~~l~~~~~-~ivvv~~~--~~i-----~~~~------~-- 63 (232)
T 2dpw_A 2 RPSAIVLAGGK-EAWAERFGVGSKALVPYRGR-PMVEWVLEALYAAGL-SPVYVGEN--PGL-----VPAP------A-- 63 (232)
T ss_dssp CCEEEEECCCB-CSGGGTTTCSBGGGSEETTE-ETHHHHHHHHHHTTC-EEEEESCC--SSC-----SSCC------S--
T ss_pred ceeEEEECCCC-CccccccCCCCceeeEECCE-EHHHHHHHHHHhcCC-EEEEEeCh--HHH-----hhhc------C--
Confidence 47899999999 88877766689999999999 999999999999998 99887543 333 2221 1
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHHcCCCeEEEEEec
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
+.+ .. ..|++++++.++..+ . +.|++++||+ +...++..+++ | +.++++++.+.+.
T Consensus 64 -~~~---~~---------~~g~~~~i~~a~~~~------~-~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~~ 121 (232)
T 2dpw_A 64 -LTL---PD---------RGGLLENLEQALEHV------E-GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVPK 121 (232)
T ss_dssp -EEE---CC---------CSSHHHHHHHHHHTC------C-SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEEH
T ss_pred -eEe---cC---------CCCHHHHHHHHHHHc------C-CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEeec
Confidence 444 11 259999999987554 2 7899999999 55667889998 7 6667788777664
Q ss_pred CCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhh-----C
Q 010874 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR-----Y 326 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~-----~ 326 (498)
++.. ..|+.+ .++|..+.||| .+++|+|+|+++.|..+.+.. .
T Consensus 122 ~~~~-~~~~~~----~~~v~~~~ek~---------------------------~~~~g~~~~~~~~l~~~~~~~~~~~~~ 169 (232)
T 2dpw_A 122 EAVE-ARFPRT----KRTYARLREGT---------------------------FTGGNLLLLDKSLFRKALPLARRVVAL 169 (232)
T ss_dssp HHHH-HHCTTC----CCCCEEETTEE---------------------------EEECSEEEEEHHHHTTTHHHHHHHHHT
T ss_pred cchh-hhCCCc----ceeEEEEecCc---------------------------eeeeeEEEEcHHHHHHHHHHHHHHHHh
Confidence 3210 123322 24577776653 368999999999876543311 0
Q ss_pred C-------------------CCCchhhhhHHHHhh--cCceEEEEEc--ceEeecCCHHHHH
Q 010874 327 P-------------------TSNDFGSEIIPAAIM--EHDVQAYIFR--DYWEDIGTIKSFY 365 (498)
Q Consensus 327 ~-------------------~~~df~~dii~~~i~--~~~I~~~~~~--~~w~dIgt~~dy~ 365 (498)
+ ..+.+.+++++.++. +.++.++.++ +.|.||+||+||.
T Consensus 170 ~~~P~~~~~~~~~~~l~~~~~ge~~l~~~~~~~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 170 RKRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp TTCHHHHHHHHCHHHHHHHHHTCCCHHHHHHHHHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred ccCHHHHHHHHCHHHHHHHHhccCCHHHHHHHHHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence 1 022345677766553 3678888884 6799999999984
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=176.15 Aligned_cols=339 Identities=14% Similarity=0.162 Sum_probs=196.3
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecC-CcchhHHHHHHHHHhc----CCC-eEEEEec-cCchhHHHHHHhhcc
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINS----GIN-KIFVLTQ-FNSASLNRHIARTYF 164 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~-G~~pLId~~L~~l~~s----Gi~-~I~Vv~~-~~~~~l~~hl~~~~~ 164 (498)
..++.+||||||.||||+ ...||+|+||+ |+ |||+|.++++... |+. .++|+++ +..+.+.+++.+ +
T Consensus 90 ~~k~avViLAGG~GTRmg---s~~PK~l~~V~~gk-~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~-~- 163 (488)
T 2i5k_A 90 LSKLAVLKLNGGLGTSMG---CVGPKSVIEVREGN-TFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKK-Y- 163 (488)
T ss_dssp GGGEEEEEECCCBSGGGT---CCSBSTTSCCBTTB-CHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGG-G-
T ss_pred cCCceEEEEcCCCcccCC---CCCCccccccCCCC-cHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHh-c-
Confidence 567899999999999998 57999999999 99 9999999998876 543 3667676 888888888864 2
Q ss_pred CCCCcCCCCeEEEecccCC---------------CCC--CCCccccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCcee
Q 010874 165 GNGTNFGDGFVEVLAATQT---------------PGE--SGKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHL 225 (498)
Q Consensus 165 ~~~~~~~~~~V~v~~~~q~---------------~~~--~~~~~~~Gta~Alr~~~--~~i~~~~~~~~e~~Lvl~GD~l 225 (498)
..|+. .|.++ .|. ... .....+.|||++++.+. ..++.......++++|++||++
T Consensus 164 ---~~fg~-~i~~f--~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL 237 (488)
T 2i5k_A 164 ---SANRI-RIRSF--NQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNL 237 (488)
T ss_dssp ---CSSSC-EEEEE--CCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBS
T ss_pred ---cccCc-eEEEE--EeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcC
Confidence 12331 12222 121 000 00113579999998431 1233221234689999999998
Q ss_pred ee-cCHHHHHHHHHHcCCCeEEEEEecCCCCCC-CceEEEECCCCC--EEEEEeCCCccccccccccccccCCCcccccc
Q 010874 226 YR-MDYMDFIQSHVDRDADITISCAAVGESRAS-DYGLVKIDNMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQEARK 301 (498)
Q Consensus 226 ~~-~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~-~~g~v~~d~~gr--V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~ 301 (498)
.. .|+. ++..|.++++++++.+.+..+ +. .||.+..+ +|+ |+.+.|.|...... .+ + ..
T Consensus 238 ~~~~d~~-~L~~~~~~~a~~t~~v~~~~~--p~~~yG~Iv~~-dG~~~iVE~~e~~~e~~~~---~~-~---------~~ 300 (488)
T 2i5k_A 238 GATVDLK-ILNHMIETGAEYIMELTDKTR--ADVKGGTLISY-DGQVRLLEVAQVPKEHIDE---FK-N---------IR 300 (488)
T ss_dssp SCCCCHH-HHHHHHHSCCSEEEEEEECCG--GGSSSCEEEEE-TTEEEEECGGGSCTTSHHH---HT-C---------TT
T ss_pred CCcccHH-HHHHHHhcCCcEEEEEEEecC--CCCceeEEEEE-CCcEEEEEeccCCHHHHhh---cc-c---------cc
Confidence 76 5775 668999999999999887765 43 49987764 566 33333334322110 00 0 01
Q ss_pred CCcceeeeEEEEcHHHHHHHHHhhCCCC---------------------CchhhhhHHHHhhcCceEEEEEc-ceEeecC
Q 010874 302 CPYVASMGVYVFKKDVLFKLLRWRYPTS---------------------NDFGSEIIPAAIMEHDVQAYIFR-DYWEDIG 359 (498)
Q Consensus 302 ~~~l~~~GIYif~~~vL~~ll~~~~~~~---------------------~df~~dii~~~i~~~~I~~~~~~-~~w~dIg 359 (498)
....+|+|+|+|+.+.|.++++...... +-|..++++.+ .+..++.++ ..+..+.
T Consensus 301 ~~~~~Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~~~~~~~~~qlE~~~~d~~~~~---~~~~~~~V~R~~F~PvK 377 (488)
T 2i5k_A 301 KFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHF---DGAHGVVVPRSRFLPVK 377 (488)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC-----CEECCBCCGGGGGGGS---SSCEEEEECGGGCCBCC
T ss_pred ccCEEEEEEEEEeHHHHHHHHhhccCCCcceecCccccCCCCCCceEEeeehhhhHHhhc---cCceEEEeccccccccc
Confidence 1246799999999999998887521100 11222333222 233344443 2356677
Q ss_pred CHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEecC--eeeec--eEEcC-CCEECceEEeccEECCCCEECCC
Q 010874 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN--CRIKD--AIISH-GCFLRECTVEHSIVGERSRLDYG 434 (498)
Q Consensus 360 t~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~--~~I~~--s~Ig~-~~~I~~~~v~~siIg~~~~Ig~~ 434 (498)
+..+++.+..++..........++.. + .+.|-..+++ .++.+ .-+.. -..++ + .+=.|--++..|.+
T Consensus 378 n~~~ll~~~~~~~~~~~g~~~~~~~~-~----e~~P~v~~~~~~~~~~~~~~rf~~~p~i~~-~--~~l~v~Gdv~fg~~ 449 (488)
T 2i5k_A 378 TCSDLLLVKSDLFRLEHGSLKLDPSR-F----GPNPLIKLGSHFKKVSGFNARIPHIPKIVE-L--DHLTITGNVFLGKD 449 (488)
T ss_dssp SHHHHHHHTSTTEEEETTEEEECTTC-C----SSCCEEEECGGGSSHHHHHHHCSSCCBCTT-E--EEEEEESSEEECTT
T ss_pred CCccHHHHHHHHHHHhcCcEeecCCc-C----CCCCeEEECCcccchhhHHhhcCCCccccc-c--ceEEEEeeeEEcCC
Confidence 76666555444322111110111110 1 1112222221 11111 00111 11122 1 12355556778888
Q ss_pred CEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEE
Q 010874 435 VELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 484 (498)
Q Consensus 435 ~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~I 484 (498)
+.++++++..+. ...++.|.+|+++.|.+|..|.+|
T Consensus 450 v~l~G~v~i~a~--------------~~~~~~ip~g~~l~n~~~~~~~~~ 485 (488)
T 2i5k_A 450 VTLRGTVIIVCS--------------DGHKIDIPNGSILENVVVTGNLQI 485 (488)
T ss_dssp CEEEEEEEEECC--------------TTCCEEECTTCEEEEEEEEEEEEE
T ss_pred cEEEEEEEEEcC--------------CCCeEEeCCCCEEecceeeccccc
Confidence 888888777541 223488999999999988777766
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=159.62 Aligned_cols=220 Identities=11% Similarity=0.088 Sum_probs=141.3
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~ 170 (498)
|++|.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++..+.+.+ +. . +
T Consensus 5 ~~~~~~iIlA~G~g~R~~---~~~~K~l~~i~g~-pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~-~-------~ 71 (236)
T 1i52_A 5 HLDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LP-L-------A 71 (236)
T ss_dssp CCCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SG-G-------G
T ss_pred CCceeEEEECCcCccccC---CCCCcceeeECCE-EHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HH-h-------c
Confidence 456899999999999998 4579999999999 99999999999887 89999999987655533 21 1 1
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCCeEEEE
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISC 248 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h~~~~ad~tv~~ 248 (498)
+...+.++.. . .|..++++.++..++ ..+.++++.||+ +.+ ..+..+++.|.+.+++. +.+
T Consensus 72 ~~~~v~~~~~--~---------~g~~~~i~~al~~~~-----~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~-~~~ 134 (236)
T 1i52_A 72 NHPQITVVDG--G---------DERADSVLAGLKAAG-----DAQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILA 134 (236)
T ss_dssp GCTTEEEEEC--C---------SSHHHHHHHHHHTST-----TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCE-EEE
T ss_pred CCCCEEEECC--C---------CCHHHHHHHHHHhcC-----CCCEEEEEcCccccCCHHHHHHHHHHHHhcCCeE-EEE
Confidence 1112544431 1 378899998876552 247899999998 334 45788888776554232 334
Q ss_pred EecCCCCCCCceEEEECCC-CCEEEEEeCCCccccccccccccccCCCccccccCCcceee-eEEEEcHHHHHHHHHhhC
Q 010874 249 AAVGESRASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM-GVYVFKKDVLFKLLRWRY 326 (498)
Q Consensus 249 ~~~~~~~~~~~g~v~~d~~-grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-GIYif~~~vL~~ll~~~~ 326 (498)
.+..+ ++...+++ |++....+. ..++.. +.++|+.+.|..+++...
T Consensus 135 ~~~~~------~~~~~~~~~~~i~~~~~~--------------------------~~i~~~~~p~~f~~~~l~~~~~~~~ 182 (236)
T 1i52_A 135 APVRD------TMKRAEPGKNAIAHTVDR--------------------------NGLWHALTPQFFPRELLHDCLTRAL 182 (236)
T ss_dssp EECCS------CEEEECTTSSSEEEEECC--------------------------TTCEEEEEEEEEEHHHHHHHHHHHH
T ss_pred Eeccc------cEEEEcCCCCceeeccCh--------------------------HhheeeeCCceecHHHHHHHHHHHH
Confidence 44432 11123444 455432211 012222 567888887766655421
Q ss_pred CCCCchhhhhHHHHh-hcCceEEEEEcceEeecCCHHHHHHHHHHhhcc
Q 010874 327 PTSNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (498)
Q Consensus 327 ~~~~df~~dii~~~i-~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~ 374 (498)
..... .++....+. ...++..+..++.|.||+||+||..|+..+.++
T Consensus 183 ~~g~~-~td~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~ 230 (236)
T 1i52_A 183 NEGAT-ITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRT 230 (236)
T ss_dssp HTTCC-CCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC-
T ss_pred hcCCC-cccHHHHHHHcCCCEEEEecCccccccCCHHHHHHHHHHHHHh
Confidence 11111 122111111 136788777778899999999999998876543
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.74 E-value=8.8e-18 Score=161.45 Aligned_cols=215 Identities=15% Similarity=0.173 Sum_probs=134.8
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
+++.|||||||.||||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++. . ++
T Consensus 2 ~~~~aiIlA~G~s~R~~------~K~l~~i~Gk-pli~~~i~~~~~~~~~~~ivv~~~--~~~i~~~~~-~-------~g 64 (229)
T 1qwj_A 2 PHLAALVLARGGSKGIP------LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAK-Q-------FG 64 (229)
T ss_dssp CCEEEEEECCSCCSSSS------CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHH-H-------TT
T ss_pred CcEEEEEEcCCCCCCCC------CcccceECCE-EHHHHHHHHHHhCCCcCEEEEECC--hHHHHHHHH-H-------cC
Confidence 35789999999999995 4999999999 99999999999998 699999984 466666664 2 22
Q ss_pred CCeEEEecccCC-CCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee--eecCHHHHHHHHHHcCCCeEEEE
Q 010874 172 DGFVEVLAATQT-PGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISC 248 (498)
Q Consensus 172 ~~~V~v~~~~q~-~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l--~~~dl~~ll~~h~~~~ad~tv~~ 248 (498)
++++..... .+. ..+..++++.++..+. ..+.+++++||.- ...++..+++.|.+.+++.++.+
T Consensus 65 ---~~~~~~~~~~~~~-----~~~~~~~v~~al~~~~-----~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~ 131 (229)
T 1qwj_A 65 ---AQVHRRSSETSKD-----SSTSLDAIVEFLNYHN-----EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSV 131 (229)
T ss_dssp ---CEEEECCGGGSST-----TCCHHHHHHHHHTTCT-----TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEE
T ss_pred ---CEEEeChhhhcCC-----CCcHHHHHHHHHHhcC-----CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 233321110 000 1244588888775542 2478999999983 34578999999988887766655
Q ss_pred EecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC
Q 010874 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (498)
Q Consensus 249 ~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~ 328 (498)
.+..+ +..+++ .| + +..|.+++....... +........+..++|+|+|+++.| ++.
T Consensus 132 ~~~~~--p~~~~v--~~--~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~~n~giY~~~~~~l---~~~---- 187 (229)
T 1qwj_A 132 VRRHQ--FRWSEI--QK--G-VREVTEPLNLNPAKR----------PRRQDWDGELYENGSFYFAKRHLI---EMG---- 187 (229)
T ss_dssp EEECC--CEECCC--CS--S-TTCCCCBSSSBTTBC----------CCTTTSCCEEEEEEEEEEEEHHHH---HTT----
T ss_pred eeccC--hhHhhc--cc--c-ccccccccccccccc----------cCCCCCCceEEEeeEEEEEEHHHh---ccc----
Confidence 54432 222322 22 2 111222111000000 000000012567999999999887 111
Q ss_pred CCchhhhhHHHHhhcCceEEE-EEc-ceEeecCCHHHHHHHHHHhhc
Q 010874 329 SNDFGSEIIPAAIMEHDVQAY-IFR-DYWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 329 ~~df~~dii~~~i~~~~I~~~-~~~-~~w~dIgt~~dy~~An~~ll~ 373 (498)
+..+..+ .+ ..+ ++|.||+||+||..|+..+..
T Consensus 188 -----------~~~g~~~-~~~~~~~~~~~dIdt~~Dl~~a~~~~~~ 222 (229)
T 1qwj_A 188 -----------YLQGGKM-AYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (229)
T ss_dssp -----------CSSCSSE-EEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred -----------cccCCeE-EEEECCcccccCCCCHHHHHHHHHHHHH
Confidence 1122334 34 555 689999999999999887754
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=153.32 Aligned_cols=186 Identities=14% Similarity=0.176 Sum_probs=128.2
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
+|.+||||||.|+||. .||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+++. .++
T Consensus 5 ~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~--------~~~-- 68 (199)
T 2waw_A 5 RVTGVVLAAGYSRRLG-----TPKQLLPLGDT-TLLGATLAMARRCPFDQLIVTLGGAADEVLEKVE--------LDG-- 68 (199)
T ss_dssp CEEEEEEESSCCTTTT-----SCGGGCEETTE-EHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSC--------CTT--
T ss_pred ceEEEEECCCCCCCCC-----CCEEeCEeCcc-CHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhc--------cCC--
Confidence 4889999999999996 58999999999 9999999999999999999999987766655442 122
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--ecCHHHHHHHHHHcCCCeEEEEEec
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~--~~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
+.++.... +..|++++++.++..++ ...+.++++.||+.+ ..++..+++. +.++++++...
T Consensus 69 -~~~~~~~~--------~~~g~~~~i~~al~~~~----~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~-- 131 (199)
T 2waw_A 69 -LDIVLVDD--------AGLGCSSSLKSALTWVD----PTAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY-- 131 (199)
T ss_dssp -SEEEECCC--------CCTTCCCHHHHHHHTSC----TTCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE--
T ss_pred -CEEEECCC--------cccCHHHHHHHHHHhhh----ccCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec--
Confidence 34443211 12588999999876652 124789999999944 5567888876 44555443211
Q ss_pred CCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCc
Q 010874 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~d 331 (498)
+ |+ +.. -++|+++.|..+... .. +
T Consensus 132 -------------~--g~-------~~~------------------------------P~~~~~~~l~~~~~~--~~--~ 155 (199)
T 2waw_A 132 -------------A--NG-------IGH------------------------------PFWVSRGVFGDLAEL--HG--D 155 (199)
T ss_dssp -------------T--TE-------EEE------------------------------EEEEEGGGHHHHHTC--SS--T
T ss_pred -------------C--Cc-------ccC------------------------------CEEEcHHHHHHHHhc--CC--C
Confidence 0 10 000 147788877765421 11 1
Q ss_pred hhhhhHHHHhhc--CceEEEEE-cceEeecCCHHHHHHHHHHh
Q 010874 332 FGSEIIPAAIME--HDVQAYIF-RDYWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 332 f~~dii~~~i~~--~~I~~~~~-~~~w~dIgt~~dy~~An~~l 371 (498)
.. +..++++ .++..+.+ .++|.||+||+||..++..+
T Consensus 156 ~~---~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~ 195 (199)
T 2waw_A 156 KG---VWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASV 195 (199)
T ss_dssp TC---HHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHH
T ss_pred HH---HHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHH
Confidence 11 3334443 45777777 45899999999999998765
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-17 Score=153.18 Aligned_cols=186 Identities=12% Similarity=0.175 Sum_probs=124.6
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
++|.+||||||.|+||. .||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+++. .++
T Consensus 4 ~~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~--------~~~- 68 (197)
T 2wee_A 4 TQITGVVLAAGRSNRLG-----TPKQLLPYRDT-TVLGATLDVARQAGFDQLILTLGGAASAVRAAMA--------LDG- 68 (197)
T ss_dssp SEEEEEEEECCCCTTTS-----SCGGGSEETTE-EHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSC--------CTT-
T ss_pred CceEEEEECCCCcccCC-----CCeEcCeeCCc-cHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhc--------cCC-
Confidence 34789999999999994 68999999999 9999999999999999999999988766655442 122
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
+.++.... +..|++++++.++..+. ...+.++++.||+ +. ...+..+++. +.++++++..
T Consensus 69 --~~~~~~~~--------~~~g~~~~i~~al~~~~----~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i~~~~-- 130 (197)
T 2wee_A 69 --TDVVVVED--------VERGCAASLRVALARVH----PRATGIVLMLGDQPQVAPATLRRIIDV--GPATEIMVCR-- 130 (197)
T ss_dssp --SEEEECC------------CCHHHHHHHHTTSC----TTEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSEEEEE--
T ss_pred --CEEEECCC--------cccCHHHHHHHHHHHhc----ccCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCEEEEe--
Confidence 34443211 12599999999876552 1236899999999 33 4567888876 4444443221
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCC
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~ 330 (498)
. + |+ +..+ ++|+++.|..+. . .. .
T Consensus 131 -~------------~--g~-------~~~P------------------------------~~~~~~~l~~l~-~-~~--~ 154 (197)
T 2wee_A 131 -Y------------A--DG-------VGHP------------------------------FWFSRTVFGELA-R-LH--G 154 (197)
T ss_dssp -E------------T--TE-------EEEE------------------------------EEEEGGGHHHHH-T-CC--S
T ss_pred -c------------C--CC-------cCCC------------------------------EEECHHHHHHHH-h-CC--C
Confidence 0 1 11 1000 367788777654 2 11 1
Q ss_pred chhhhhHHHHhhc--CceEEEEE-cceEeecCCHHHHHHHHHH
Q 010874 331 DFGSEIIPAAIME--HDVQAYIF-RDYWEDIGTIKSFYEANMA 370 (498)
Q Consensus 331 df~~dii~~~i~~--~~I~~~~~-~~~w~dIgt~~dy~~An~~ 370 (498)
+ .-+..+++. .++..+.+ .++|.||+||+||..++..
T Consensus 155 ~---~~~~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl~~~~~~ 194 (197)
T 2wee_A 155 D---KGVWKLVHSGRHPVRELAVDGCVPLDVDTWDDYRRLLES 194 (197)
T ss_dssp T---THHHHHHHCTTSCEEEEECSSCCCCCCSSHHHHHHHHTC
T ss_pred C---hhHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHH
Confidence 1 123344444 45777766 3689999999999988653
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-17 Score=154.88 Aligned_cols=130 Identities=22% Similarity=0.291 Sum_probs=94.0
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|+|||||||.|+||+| +||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+++.+.| . +. ..
T Consensus 1 m~aiIlA~G~s~R~~~----~~K~l~~~~g~-pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~~-~----~~-~~ 69 (196)
T 3rsb_A 1 MDALIMAGGKGTRMGG----VEKPLIKLCGR-CLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSAY-K----DY-KN 69 (196)
T ss_dssp CEEEEEC----CGGGG----SCGGGCEETTE-EHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHHT-T----TT-TE
T ss_pred CEEEEECCCCCCcCCC----CCccEEEECCE-EHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhhc-c----CC-CC
Confidence 6899999999999998 89999999999 9999999999999999999999999888888886533 1 11 12
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHHHHHH-----cCCCeEEE
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVD-----RDADITIS 247 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~~h~~-----~~ad~tv~ 247 (498)
+.++... + .|++++++.++..+ .+.++++.||+ +...++.++++.|.+ .+.+..+.
T Consensus 70 ~~~~~~~---~-------~g~~~si~~al~~~-------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~ 132 (196)
T 3rsb_A 70 IVVIDTS---G-------KGYIEDLNECIGYF-------SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAV 132 (196)
T ss_dssp EEE------------------CCCCCTTTTTC-------SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEE
T ss_pred EEEEECC---C-------CCcHHHHHHHHHhC-------CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEE
Confidence 4444321 1 47778887775433 47899999999 445679999999987 56666666
Q ss_pred EEecC
Q 010874 248 CAAVG 252 (498)
Q Consensus 248 ~~~~~ 252 (498)
+.+..
T Consensus 133 ~~p~~ 137 (196)
T 3rsb_A 133 MIPKE 137 (196)
T ss_dssp EEETT
T ss_pred EEEcc
Confidence 66654
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-16 Score=150.18 Aligned_cols=206 Identities=10% Similarity=0.019 Sum_probs=126.6
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
++.|||||||.|+||++ . ||+|+|++|+ |||+|+++. ..++++|+|++++. +.+ + .. .
T Consensus 25 ~~~aiILAgG~s~Rm~~---~-~K~l~~i~gk-pli~~~l~~--~~~~~~ivvv~~~~---~~~-~-----~~---~--- 82 (236)
T 2px7_A 25 EVSVLIPAAGNGLRLGR---G-PKAFLQVGGR-TLLEWTLAA--FRDAAEVLVALPPG---AEP-P-----KG---L--- 82 (236)
T ss_dssp CCEEEEECCC----------C-CGGGCBCSSS-BHHHHHHHH--TTTCSEEEEEECTT---CCC-C-----TT---C---
T ss_pred ceEEEEEcCCCCccCCC---C-CCeEEEECCE-EHHHHHHHh--cCCCCeEEEEeCHH---HHH-h-----hc---C---
Confidence 46699999999999985 3 9999999999 999999999 77899999999861 111 1 11 1
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCCeEEEEEec
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
.+.++.. . .|..++++.++..++ .+.+++++||+ +.. ..+..+++.+.+.++ .+.+.+.
T Consensus 83 ~v~~~~~--~---------~~~~~~i~~al~~~~------~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~i~~~~~ 143 (236)
T 2px7_A 83 GAVFLEG--G---------ATRQASVARLLEAAS------LPLVLVHDVARPFVSRGLVARVLEAAQRSGA--AVPVLPV 143 (236)
T ss_dssp SCEEEEC--C---------SSHHHHHHHHHHHCC------SSEEEECCTTCCCCCHHHHHHHHHHHHHHSE--EEEEEEC
T ss_pred CcEEEeC--C---------CchHHHHHHHHHHcC------CCeEEEecCccccCCHHHHHHHHHHHHhcCC--eEEEEec
Confidence 1344321 1 367888888876552 46799999997 444 458888888876543 4444444
Q ss_pred CCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCc
Q 010874 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~d 331 (498)
.+ . ....+ +|++..+.++... ..+. ..++|+++.|..+++........
T Consensus 144 ~~--~----~~~~~-~G~v~~~~~~~~~------------------------~~~~-~~~~f~~~~l~~~~~~~~~~g~~ 191 (236)
T 2px7_A 144 PD--T----LMAPE-GEAYGRVVPREAF------------------------RLVQ-TPQGFFTALLREAHAYARRKGLE 191 (236)
T ss_dssp CS--E----EEEEC-SSSCEEEECGGGC------------------------EEEC-SCEEEEHHHHHHHHHHHHHHTCC
T ss_pred CC--c----EEEec-CCeEEecCChHhh------------------------cccc-CCeEEcHHHHHHHHHHHHhcCCC
Confidence 32 1 11124 6787766542110 1122 24678888776665432111111
Q ss_pred hhhhhHHHHh-hcCceEEEEEcceEeecCCHHHHHHHHHHhhc
Q 010874 332 FGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 332 f~~dii~~~i-~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~ 373 (498)
..+....+. ...++..+..+++|.||+||+||..|+..+..
T Consensus 192 -~~d~~~ll~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 233 (236)
T 2px7_A 192 -ASDDAQLVQALGYPVALVEGEATAFKITHPQDLVLAEALARV 233 (236)
T ss_dssp -CSSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHTC
T ss_pred -chhHHHHHHHcCCcEEEEECCccccCCCCHHHHHHHHHHHHh
Confidence 122221111 24578888888899999999999999876643
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-15 Score=143.02 Aligned_cols=214 Identities=12% Similarity=0.143 Sum_probs=136.6
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
..|.|||||||.|+||+ ..+||+|+|++|+ |||+|+++++.+++ +++|+|++++..+.+ +. .++. ++
T Consensus 12 ~~~~aiILAaG~s~Rm~---~~~~K~l~~i~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~---~~-~~~~----~~ 79 (234)
T 1vpa_A 12 HMNVAILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWFEV---VE-KRVF----HE 79 (234)
T ss_dssp CCEEEEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGHHH---HH-TTCC----CT
T ss_pred ccCeEEEEcCcchhhcC---CCCCceEEEECCe-EHHHHHHHHHHcCCCCCeEEEEEChHHHHH---HH-HHhc----cC
Confidence 34889999999999998 3579999999999 99999999999998 999999998865432 21 2211 21
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeEEEEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
. .+... .. + .+..++++.++..+++ ...+.++++.||. +. ...+..+++.+.+.++ .+++.
T Consensus 80 ~-~~~~~--~g--g-------~~~~~sv~~al~~~~~---~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~--~i~~~ 142 (234)
T 1vpa_A 80 K-VLGIV--EG--G-------DTRSQSVRSALEFLEK---FSPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLAL 142 (234)
T ss_dssp T-EEEEE--EC--C-------SSHHHHHHHHHHHHGG---GCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEEE
T ss_pred C-ceEEe--CC--C-------CcHHHHHHHHHHHhhh---cCCCEEEEecCcccCCCHHHHHHHHHHHHhcCC--EEEEE
Confidence 1 12211 11 0 1377889888877641 0235688888998 44 4468889988876543 34444
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCC
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~ 329 (498)
+..+ ++...+++| + .+.++.. .+..-..++|+.+.|..+++..
T Consensus 143 ~~~~------~~~~~~~~g-v-~~~~r~~-------------------------~~~~~~p~~f~~~~l~~~~~~~---- 185 (234)
T 1vpa_A 143 KNSD------ALVRVENDR-I-EYIPRKG-------------------------VYRILTPQAFSYEILKKAHENG---- 185 (234)
T ss_dssp ECCS------EEEEEETTE-E-EEECCTT-------------------------EEEEEEEEEEEHHHHHHHHTTC----
T ss_pred ecCC------cEEEECCCC-c-ccCChhH-------------------------eeeecCCccccHHHHHHHHHhc----
Confidence 4432 122335566 5 5544311 0111134588888887765431
Q ss_pred CchhhhhHHHHh-hcCceEEEEEcceEeecCCHHHHHHHHHHhhc
Q 010874 330 NDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 330 ~df~~dii~~~i-~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~ 373 (498)
.+..+....+. ...++..+..++.|.||+||+||..|+..+.+
T Consensus 186 -~~~~~~~~~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 229 (234)
T 1vpa_A 186 -GEWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIARE 229 (234)
T ss_dssp -CCCSSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHHH
T ss_pred -CCCCcHHHHHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHHhc
Confidence 11122222111 23567776666789999999999999876543
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-18 Score=173.31 Aligned_cols=75 Identities=11% Similarity=0.144 Sum_probs=48.8
Q ss_pred CeEEEEcCceeeec--CHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEECC--CCCEEEEEeCCCcccccccccccc
Q 010874 215 ENVAILCGDHLYRM--DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN--MGRIAQFAEKPSGANLKAMQVDTS 290 (498)
Q Consensus 215 e~~Lvl~GD~l~~~--dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d~--~grV~~~~EKp~~~~~~~~~~~~~ 290 (498)
..=|+-.||++|+| ||.++++.|. .|+.. .+++..||+..+++ +++| .|.|||+.+..
T Consensus 11 ~~~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g----~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~-------- 72 (374)
T 2iu8_A 11 SSGLVPRGSHMSQSTYSLEQLADFLK-----VEFQG----NGATLLSGVEEIEEAKTAHI-TFLDNEKYAKH-------- 72 (374)
T ss_dssp ----------CCSCCEEHHHHHHHTT-----CEEES----CTTCEECEECCTTTCCTTEE-EECCSSSTHHH--------
T ss_pred ccCcccCccccccCcCcHHHHHHhhC-----CEEEC----CCcceEEEEeccccCCCCeE-EEEeCchhhhh--------
Confidence 34578899999998 8999999994 36653 23356789888874 4566 99999985321
Q ss_pred ccCCCccccccCCcceeeeEEEEcHHHHH
Q 010874 291 LLGFSPQEARKCPYVASMGVYVFKKDVLF 319 (498)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~GIYif~~~vL~ 319 (498)
..+.++|+|+|+++++.
T Consensus 73 ------------~~~~~aGiyI~~~~~l~ 89 (374)
T 2iu8_A 73 ------------LKSSEAGAIIISRTQFQ 89 (374)
T ss_dssp ------------HHTCCCSEEEEEHHHHH
T ss_pred ------------hhcCCcEEEEeChhHhh
Confidence 14679999999998874
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.4e-15 Score=141.48 Aligned_cols=217 Identities=15% Similarity=0.135 Sum_probs=146.0
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc-CCCeEEEEeccCc-hhHHHHHHhhccCCCCcCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~-~~l~~hl~~~~~~~~~~~~ 171 (498)
.+.|||||||.|+||. ...||+|+|++|+ |||+|+++.+.++ ++++|+|++++.. +.+.+++..
T Consensus 7 ~~~aIIlAaG~g~Rmg---~~~~K~l~~l~Gk-pll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~---------- 72 (231)
T 3q80_A 7 EVVAIVPAAGSGERLA---VGVPKAFYQLDGQ-TLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH---------- 72 (231)
T ss_dssp CEEEEEECCCCCTTTC---SSSCGGGCEETTE-EHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG----------
T ss_pred ceEEEEECCCCCccCC---CCCCceEEEECCe-EHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC----------
Confidence 4789999999999997 3689999999999 9999999999987 4999999998765 334333321
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeEEEEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
.+.++... .+..++++.++..+++. ...+.+|++.||. +. ...+..+++.+.+ +.+..+.+.
T Consensus 73 --~v~~v~gg-----------~~r~~sv~~gl~~~~~~--~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~~~ 136 (231)
T 3q80_A 73 --RAMIVAGG-----------SNRTDTVNLALTVLSGT--AEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVPVL 136 (231)
T ss_dssp --GCEEEECC-----------SSHHHHHHHHHGGGC-----CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEEEE
T ss_pred --CeEEEcCC-----------CchHHHHHHHHHHhhhc--CCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEEEE
Confidence 13343211 13468888887666420 1136799999998 43 4457888888865 345667777
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC-
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~- 328 (498)
++.++ +...+++|+|....+. ... +.+.+ -|+|+.+.|.+.++.....
T Consensus 137 p~~dt------~~~~~~~g~v~~~~~r---~~l---------------------~~~qT-Pq~F~~~~L~~a~~~~~~~n 185 (231)
T 3q80_A 137 PLSDT------IKAVDANGVVLGTPER---AGL---------------------RAVQT-PQGFTTDLLLRSYQRGSLDL 185 (231)
T ss_dssp CCSSC------EEEECTTSBEEECCCG---GGE---------------------EEECS-CEEEEHHHHHHHHHHHTC--
T ss_pred eccCC------EEEEcCCCcEEEecch---hhe---------------------EEEcC-CcEEEHHHHHHHHHHHHhhc
Confidence 77652 2224677887765432 111 23444 4999999998887764331
Q ss_pred CCchhhhhHHHHh-hcCceEEEEEcceEeecCCHHHHHHHHHHh
Q 010874 329 SNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 329 ~~df~~dii~~~i-~~~~I~~~~~~~~w~dIgt~~dy~~An~~l 371 (498)
...+.+|....+. ...+|....-+..++.|+||+|+..|+..|
T Consensus 186 ~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l 229 (231)
T 3q80_A 186 PAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIV 229 (231)
T ss_dssp ---CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHh
Confidence 1223455554333 346677666666689999999999998765
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.4e-15 Score=156.56 Aligned_cols=210 Identities=18% Similarity=0.237 Sum_probs=141.3
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceec---CCcchhHHHHHHHHHh--------cC----CCeEEEEeccCchhHHH
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCIN--------SG----INKIFVLTQFNSASLNR 157 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI---~G~~pLId~~L~~l~~--------sG----i~~I~Vv~~~~~~~l~~ 157 (498)
.+|.+||||||.||||. ...||+|+|| .|+ |+|++.++++.. .| +..+++...+..+.+.+
T Consensus 101 ~kvavViLAGG~GTRLg---~~~PK~l~pv~~~~gk-~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~ 176 (505)
T 1jv1_A 101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (505)
T ss_dssp TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CceEEEEEcCCccccCC---CCCCCccceeecCCCC-cHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHH
Confidence 67999999999999995 5799999999 799 999999999876 36 66666666777888988
Q ss_pred HHHh-hccCCCCcCCCCeEEEeccc-----CCCCC-------CCCccccChHHHHHHHHH--HHHhhhcCCCCeEEEEcC
Q 010874 158 HIAR-TYFGNGTNFGDGFVEVLAAT-----QTPGE-------SGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCG 222 (498)
Q Consensus 158 hl~~-~~~~~~~~~~~~~V~v~~~~-----q~~~~-------~~~~~~~Gta~Alr~~~~--~i~~~~~~~~e~~Lvl~G 222 (498)
|+.+ .||+... ..|.++... ...+. .-...+.|||++++.+.. .+++......++|+|+++
T Consensus 177 ~f~~~~~fGl~~----~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~ 252 (505)
T 1jv1_A 177 FFTKHKYFGLKK----ENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCV 252 (505)
T ss_dssp HHHHTGGGGSCG----GGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEET
T ss_pred HHHhhhhcCCCc----CceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEEC
Confidence 9864 2343210 113222100 00000 000125799999987643 333222234589999999
Q ss_pred cee-eecCHHHHHHHHHHcCCCeEEEEEe-cCCCCCCCceEEEECCCCC--EEEEEeCCCccccccccccccccCCCccc
Q 010874 223 DHL-YRMDYMDFIQSHVDRDADITISCAA-VGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQE 298 (498)
Q Consensus 223 D~l-~~~dl~~ll~~h~~~~ad~tv~~~~-~~~~~~~~~g~v~~d~~gr--V~~~~EKp~~~~~~~~~~~~~~~~~~~~~ 298 (498)
|++ ...+...++..|.++++++++.+.+ ... ...+|++..+ +|+ ++.+.|+|..... ..+ +.
T Consensus 253 Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~--~e~~Gvl~~~-dg~~~vvEy~E~p~~~~~---~~~-------~~- 318 (505)
T 1jv1_A 253 DNILVKVADPRFIGFCIQKGADCGAKVVEKTNP--TEPVGVVCRV-DGVYQVVEYSEISLATAQ---KRS-------SD- 318 (505)
T ss_dssp TBTTCCTTCHHHHHHHHHTTCSEEEEEEECCST--TCSCCEEEEE-TTEEEEECGGGSCHHHHH---CBC-------TT-
T ss_pred CccccccchHHHHHHHHHcCCCEEEEEEEccCC--ccCcceEEEE-CCeEEEEEEeeCCHHHhh---hcc-------cc-
Confidence 995 7777778999999999999998886 433 4578988775 455 4555566543210 000 00
Q ss_pred cccCCcceeeeEEEEcHHHHHHHHHh
Q 010874 299 ARKCPYVASMGVYVFKKDVLFKLLRW 324 (498)
Q Consensus 299 ~~~~~~l~~~GIYif~~~vL~~ll~~ 324 (498)
-....+.+|+|+|+|+.++|..+.+.
T Consensus 319 g~~~~~~~N~~~~~f~l~~L~~i~~~ 344 (505)
T 1jv1_A 319 GRLLFNAGNIANHFFTVPFLRDVVNV 344 (505)
T ss_dssp SSBSSCEEEEEEEEEEHHHHHHHHHT
T ss_pred cccccceeeEEEEEecHHHHHHHHHh
Confidence 01124689999999999999887653
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=143.38 Aligned_cols=180 Identities=10% Similarity=0.056 Sum_probs=112.3
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
|+++.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +++|+|++++..+ +++ . +
T Consensus 12 ~~~~~~iILA~G~g~Rmg-----~~K~ll~i~g~-pll~~~l~~l~~~-~~~i~vv~~~~~~---~~~-----~-----~ 71 (201)
T 2e8b_A 12 SKVNTCYVLAGGKSKRFG-----EDKLLYEIKGK-KVIERVYETAKSV-FKEVYIVAKDREK---FSF-----L-----N 71 (201)
T ss_dssp CSCCEEEEEEESSCCCCS-----TTHHHHHHHHH-HHHHHHHHHHHTT-CSEEEEEESCSGG---GGG-----G-----T
T ss_pred ccCceEEEECCCCCccCC-----CCcccceECce-EHHHHHHHHHHHh-CCEEEEEeCcHHH---hhc-----C-----C
Confidence 345789999999999997 68999999999 9999999999988 9999999987653 111 1 1
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-ecC-HHH-HHHHHHHcCCCeEEEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMD-FIQSHVDRDADITISC 248 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~-~~d-l~~-ll~~h~~~~ad~tv~~ 248 (498)
++++.... +..|++++++.+...++ .+.+++++||+.+ +.+ +.. ++ +.++++.
T Consensus 72 ---~~~v~~~~--------~~~g~~~~i~~al~~~~------~~~~lv~~~D~P~i~~~~i~~~l~------~~~~~v~- 127 (201)
T 2e8b_A 72 ---APVVLDEF--------EESASIIGLYTALKHAK------EENVFVLSGDLPLMKKETVLYVLE------NFKEPVS- 127 (201)
T ss_dssp ---CCEEECCC--------SSCCHHHHHHHHHHHCS------SSEEEEEETTCTTCCHHHHHHHHH------TCCSSEE-
T ss_pred ---ceEEecCC--------CCCCcHHHHHHHHHHcC------CCCEEEEeCCcCcCCHHHHHHHHh------cCCEEEE-
Confidence 23333221 12699999999986653 4789999999943 333 455 44 1222221
Q ss_pred EecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC
Q 010874 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (498)
Q Consensus 249 ~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~ 328 (498)
.+ +|+ .....|+| |+++++..+.+....
T Consensus 128 ---------------~~-~g~----------------------------------~~p~~giy-~~~~~~~~l~~~~~~- 155 (201)
T 2e8b_A 128 ---------------VA-KTE----------------------------------KLHTLVGV-YSKKLLEKIEERIKK- 155 (201)
T ss_dssp ---------------EE-ESS----------------------------------SEEEEEEE-EEGGGHHHHHHHHHT-
T ss_pred ---------------ec-CCc----------------------------------eeeEEEEE-eChhHHHHHHHHHHc-
Confidence 00 010 13467999 999977654331111
Q ss_pred CCchhhhhHHHHhhcCceEEEEEc--ceEe--ecCCHHHHHHHHHHh
Q 010874 329 SNDFGSEIIPAAIMEHDVQAYIFR--DYWE--DIGTIKSFYEANMAL 371 (498)
Q Consensus 329 ~~df~~dii~~~i~~~~I~~~~~~--~~w~--dIgt~~dy~~An~~l 371 (498)
......++++. .++..+.++ +.|. |||||+||.+++..+
T Consensus 156 g~~~~~~~l~~----~~~~~~~~~~~~~~~~~dintpedl~~~~~~~ 198 (201)
T 2e8b_A 156 GDYRIWALLKD----VGYNEVEIPEELRYTLLNMNTKEDLKRILAIE 198 (201)
T ss_dssp TCCCHHHHHHH----HCCEEEECCGGGGGGGCCSCCC----------
T ss_pred CCchHHHHHHH----CCeEEeccccccchhhcCCCCHHHHHHHHHHh
Confidence 12223444443 356666664 5789 999999999886543
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-14 Score=135.04 Aligned_cols=111 Identities=11% Similarity=0.119 Sum_probs=83.3
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
|++|.+||||||.|+||+ ..||+|+|++|+ |||+|+++++.. ++++|+|++++..+.+ . . ++
T Consensus 4 mm~~~~iILAgG~s~Rmg----~~~K~ll~i~G~-pli~~~l~~l~~-~~~~ivvv~~~~~~~~----~-~-------~~ 65 (201)
T 1e5k_A 4 MTTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMT-QLSHVVVNANRHQEIY----Q-A-------SG 65 (201)
T ss_dssp CCSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHH-HCSCEEEECSSSHHHH----H-T-------TS
T ss_pred CCcceEEEEcCCCCCcCC----CCCCceeeECce-eHHHHHHHHHHh-hCCEEEEEcCCcHHHH----h-h-------cC
Confidence 557899999999999997 378999999999 999999999984 6999999998865332 1 1 12
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeecC-HHHHHHH
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQS 236 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~d-l~~ll~~ 236 (498)
+.++...... ..|++++++.++..++ .+.++++.||+ +...+ +..+++.
T Consensus 66 ---~~~v~~~~~~-------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 66 ---LKVIEDSLAD-------YPGPLAGMLSVMQQEA------GEWFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp ---CCEECCCTTC-------CCSHHHHHHHHHHHCC------SSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred ---CeEEecCCCC-------CCCHHHHHHHHHHhCC------CCcEEEEeCCcCcCCHHHHHHHHhh
Confidence 2334322110 1599999999887653 47899999999 44544 6777765
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-15 Score=139.68 Aligned_cols=182 Identities=13% Similarity=0.172 Sum_probs=111.9
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
+|.+||||||.|+||.+ ||+|+|++|+ |||+|+++.+..+ +|+|++++..+.+. .++. .+
T Consensus 2 ~~~~iIlAgG~g~Rmg~-----~K~l~~i~g~-pll~~~l~~l~~~---~ivvv~~~~~~~~~-----~~~~----~~-- 61 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFGG-----DKLLAKIDNT-PIIMRTIRIYGDL---EKIIIVGKYVNEML-----PLLM----DQ-- 61 (197)
T ss_dssp CEEEEEECSCCTTCCCS-----SGGGSBSSSS-BHHHHHHHHTTTS---BCCEEECTTHHHHG-----GGCT----TS--
T ss_pred ceEEEEECCcCcccCCC-----CeeeCEeCce-EHHHHHHHHHHhC---CEEEEECCCHHHHH-----HHhc----CC--
Confidence 47899999999999973 8999999999 9999999999876 88999988754442 2222 12
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCCeEEEEEec
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
+ ++... .|..|++++|+.++..+. ..+.++++.||+ +.. ..+..+++.+ +.++++++...
T Consensus 62 -~-~v~~~--------~~~~G~~~si~~al~~~~-----~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~~-- 123 (197)
T 3d5n_A 62 -I-VIYNP--------FWNEGISTSLKLGLRFFK-----DYDAVLVALGDMPFVTKEDVNKIINTF-KPNCKAVIPTH-- 123 (197)
T ss_dssp -C-EEECT--------TGGGCHHHHHHHHHHHTT-----TSSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSEEEEEE--
T ss_pred -E-EEECC--------CCCCCHHHHHHHHHHhhc-----cCCcEEEEeCCccccCHHHHHHHHHHh-cCCCcEEEEEe--
Confidence 3 33221 123699999999987764 236899999999 444 4477888776 44554433211
Q ss_pred CCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCc
Q 010874 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (498)
Q Consensus 252 ~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~d 331 (498)
+ | ++.. + .+|+++.+..+.. . ....+
T Consensus 124 -------------~--g-------~~~~-----------------------P-------~~~~~~~l~~l~~-l-~g~~~ 149 (197)
T 3d5n_A 124 -------------K--G-------ERGN-----------------------P-------VLISKSLFNEIEK-L-RGDVG 149 (197)
T ss_dssp -------------T--T-------EECS-----------------------C-------EEEEHHHHHHHHH-C-CTTCC
T ss_pred -------------C--C-------cccC-----------------------C-------EEECHHHHHHHHc-c-CCCcc
Confidence 0 1 0011 1 2778888876642 1 21111
Q ss_pred hhhhhHHHHhhc--CceEEEEEc--ceEeecCCHHHHHHHHHHhh
Q 010874 332 FGSEIIPAAIME--HDVQAYIFR--DYWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 332 f~~dii~~~i~~--~~I~~~~~~--~~w~dIgt~~dy~~An~~ll 372 (498)
+..+++. .++..+..+ +.|.||+||+||..++..+.
T Consensus 150 -----~~~~l~~~~~~v~~v~~~~~~~~~dIdTpeDl~~~~~~~~ 189 (197)
T 3d5n_A 150 -----ARVILNKIKIEELCFIECSEGVLIDIDKKEDLMRLRDFHP 189 (197)
T ss_dssp -----THHHHTTSCGGGEEEEECCGGGTCCTTTC-----------
T ss_pred -----HHHHHHhCccCeEEEEcCCCCcccCCCCHHHHHHHHHhhc
Confidence 1223333 346666664 57899999999998876553
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.4e-13 Score=141.16 Aligned_cols=349 Identities=14% Similarity=0.149 Sum_probs=196.4
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecC-CcchhHHHHHHHHHhcCCC-----eEEEEe-ccCchhHHHHHH-h-hc
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINSGIN-----KIFVLT-QFNSASLNRHIA-R-TY 163 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~-G~~pLId~~L~~l~~sGi~-----~I~Vv~-~~~~~~l~~hl~-~-~~ 163 (498)
+++.+||||||.||||+ ...||+|+||+ |+ |+|++.++++...|.. .++|.+ .+..+.+.+|+. + .|
T Consensus 74 ~k~avViLAGGlGTRLg---~~~PK~llpV~~gk-~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~~~ 149 (505)
T 2oeg_A 74 QSTVVLKLNGGLGTGMG---LCDAKTLLEVKDGK-TFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARYPW 149 (505)
T ss_dssp HTEEEEEEECCCCGGGT---CCSCGGGSEEETTE-EHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHCHH
T ss_pred hcceEEEEcCCcccccC---CCCCCcccccCCCC-cHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhhhc
Confidence 47999999999999999 67999999999 99 9999999999987533 455555 465888989996 3 33
Q ss_pred cCCC---Cc-CCCCeEEEecccC-C----CCC-CCCccccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceeee-cCH
Q 010874 164 FGNG---TN-FGDGFVEVLAATQ-T----PGE-SGKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYR-MDY 230 (498)
Q Consensus 164 ~~~~---~~-~~~~~V~v~~~~q-~----~~~-~~~~~~~Gta~Alr~~~--~~i~~~~~~~~e~~Lvl~GD~l~~-~dl 230 (498)
|+-. .. |....+-.+..+. . +.+ .-...+.|||++++.+. .++++......++++|.++|++.. .|+
T Consensus 150 fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~ 229 (505)
T 2oeg_A 150 LYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK 229 (505)
T ss_dssp HHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH
T ss_pred cCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH
Confidence 5421 11 2222222211110 0 000 00112569999997551 112222123468999999999874 577
Q ss_pred HHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEEC------CCCC---------EEEEEeCCCccccccccccccccCCC
Q 010874 231 MDFIQSHVDRDADITISCAAVGESRASDYGLVKID------NMGR---------IAQFAEKPSGANLKAMQVDTSLLGFS 295 (498)
Q Consensus 231 ~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d------~~gr---------V~~~~EKp~~~~~~~~~~~~~~~~~~ 295 (498)
.++..|.++++++++.+.+..... ..+|++..+ .+|+ ++.+.|-|...... . ++.
T Consensus 230 -~llg~~~~~~ad~~~~v~~k~~~d-~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~---~-~g~---- 299 (505)
T 2oeg_A 230 -RVLAYMEKEKIDFLMEVCRRTESD-KKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMES---F-QDI---- 299 (505)
T ss_dssp -HHHHHHHHHTCSEEEEEEECCTTC-CSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHH---H-HCT----
T ss_pred -HHHHHHHhcCCcEEEEEEEecCCc-cceeEEEEecccccccCCccccccCceeEEEeccCChhhhhc---c-cCc----
Confidence 899999999999999998876521 368888772 4577 33333333322110 0 000
Q ss_pred ccccccCCcceeeeEEEEcHHHHHHHHHhh-----CCC-----C--------------CchhhhhHHHHhhcCceEEEEE
Q 010874 296 PQEARKCPYVASMGVYVFKKDVLFKLLRWR-----YPT-----S--------------NDFGSEIIPAAIMEHDVQAYIF 351 (498)
Q Consensus 296 ~~~~~~~~~l~~~GIYif~~~vL~~ll~~~-----~~~-----~--------------~df~~dii~~~i~~~~I~~~~~ 351 (498)
....+.++...+|+-+.|.++++.. .+. . +-|..++++.. .+..++.+
T Consensus 300 -----~~f~~~Ninn~~~~l~~l~~~~~~~~~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~---~~~~~~~V 371 (505)
T 2oeg_A 300 -----NKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMF---ESASAIVV 371 (505)
T ss_dssp -----TTTCEEEEEEEEEEHHHHHHHHHHTTSSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSC---TTCEEEEC
T ss_pred -----cccCeeEEEEEEEEHHHHHHHHhhhcCccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhc---CcceEEEe
Confidence 1124579999999999998887752 110 0 00112222211 23444444
Q ss_pred c-ceEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEecC---eeee--ceEEcCC-CEECceEEeccE
Q 010874 352 R-DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN---CRIK--DAIISHG-CFLRECTVEHSI 424 (498)
Q Consensus 352 ~-~~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~---~~I~--~s~Ig~~-~~I~~~~v~~si 424 (498)
+ .-+..+.+..++..+..++.....+..+.-....+. ..|...++. ..+. ..-+..| ..|-++ .+=+
T Consensus 372 ~R~~FsPvKn~~dl~~~~sdly~~~~~~~~~~~~~~~~----~~p~i~l~p~~~~~~~~~~~r~~~g~psi~~~--~~L~ 445 (505)
T 2oeg_A 372 PRSRFAPVKTCADLLALRSDAYVVTDDFRLVLDDRCHG----HPPVVDLDSAHYKMMNGFEKLVQHGVPSLVEC--KRVT 445 (505)
T ss_dssp CGGGCCCCSSHHHHHHHHSTTEEECTTCCEEECGGGTT----CCCEEEECHHHHSSHHHHHHHSTTCCCBCTTE--EEEE
T ss_pred ccceeecccCCCCHHHHHHHHHhhcCCceEEEcccccC----cCCeEEEChhHcCcHHHHHHhcCCCCCccccC--cEEE
Confidence 3 235677788888888777765433111110000000 111122221 1111 1122222 122211 1123
Q ss_pred ECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCC
Q 010874 425 VGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (498)
Q Consensus 425 Ig~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~ 482 (498)
|--.+..|.++.++++++..+. +...++.|.+|++++|..|...-
T Consensus 446 v~G~~~f~~~v~l~G~v~i~a~-------------~~~~~~~ip~g~~l~n~~~~~~~ 490 (505)
T 2oeg_A 446 VKGLVQFGAGNVLTGTVTIENT-------------DSASAFVIPDGAKLNDTTASPQQ 490 (505)
T ss_dssp EESSEECCTTCEEEEEEEEECC-------------SCSSCEECCTTCEEESCEECC--
T ss_pred EEcceEEccCcEEEEEEEEEec-------------CCCCcEEeCCCCEEeCceechhh
Confidence 4444566777888777776641 01223788888888888776554
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=137.55 Aligned_cols=217 Identities=17% Similarity=0.245 Sum_probs=142.3
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecC---CcchhHHHHHHHHHhc--------C------CCeEEEEeccCchhH
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS--------G------INKIFVLTQFNSASL 155 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~---G~~pLId~~L~~l~~s--------G------i~~I~Vv~~~~~~~l 155 (498)
.+|.+||||||.||||. ...||+|+||+ |+ |+|++.++++... | |..+++...+..+.+
T Consensus 102 gkvavvlLaGG~GTRLg---~~~PK~l~~v~l~~gk-~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t 177 (486)
T 2yqc_A 102 GEVAVLLMAGGQGTRLG---SSAPKGCFNIELPSQK-SLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNAT 177 (486)
T ss_dssp TCEEEEEEEESBCGGGT---CSSBGGGCBCCCTTCC-BHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHH
T ss_pred CCeEEEEEcCCccccCC---CCCCCccceecCCCCC-cHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHH
Confidence 47999999999999994 68999999999 99 9999999999876 6 888888888888889
Q ss_pred HHHHHh-hccCCCCc----CCCCeEEEecccC--CCC---CCCCccccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCc
Q 010874 156 NRHIAR-TYFGNGTN----FGDGFVEVLAATQ--TPG---ESGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGD 223 (498)
Q Consensus 156 ~~hl~~-~~~~~~~~----~~~~~V~v~~~~q--~~~---~~~~~~~~Gta~Alr~~~~--~i~~~~~~~~e~~Lvl~GD 223 (498)
.+|+.+ .||+.... |..+.+-.+..+. -.- ..-...+.|+|+.++.+.. .+++......+++.+.+.|
T Consensus 178 ~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vD 257 (486)
T 2yqc_A 178 ESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVD 257 (486)
T ss_dssp HHHHHHTGGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETT
T ss_pred HHHHhhccccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCC
Confidence 999975 34543211 1111111111100 000 0000125799999876632 2443334467899999999
Q ss_pred eeee--cCHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEECC-CC--CEEEEEeCCCccccccccccccccCCCccc
Q 010874 224 HLYR--MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN-MG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQE 298 (498)
Q Consensus 224 ~l~~--~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d~-~g--rV~~~~EKp~~~~~~~~~~~~~~~~~~~~~ 298 (498)
.+.- .| -.++..|.++++++++.+.+.... ....|++.... +| +|+.|.|+|...... .+.+ ++.
T Consensus 258 N~l~~~~D-p~~lg~~~~~~~~~~~~vv~k~~~-~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~---~~~~----~~~- 327 (486)
T 2yqc_A 258 NCLVKVAD-PIFIGFAIAKKFDLATKVVRKRDA-NESVGLIVLDQDNQKPCVIEYSEISQELANK---KDPQ----DSS- 327 (486)
T ss_dssp BTTCCTTC-HHHHHHHHHHTCSEEEEEEECCST-TCCCCEEEEETTTTEEEEECGGGSCHHHHHC---EETT----EEE-
T ss_pred CceeeccC-HHHHHHHHHcCCCEEEEEEEcCCC-CCceeEEEEEecCCCEEEEEEecCCHHHhhc---cccc----ccc-
Confidence 8543 45 457889999999999988776432 14578776531 45 578888887532110 0000 000
Q ss_pred cccCCcceeeeEEEEcHHHHHHHHHh
Q 010874 299 ARKCPYVASMGVYVFKKDVLFKLLRW 324 (498)
Q Consensus 299 ~~~~~~l~~~GIYif~~~vL~~ll~~ 324 (498)
....+..|+|+|+|+.++|..+++.
T Consensus 328 -~~~~~~~Ni~~~~~~l~~L~~~l~~ 352 (486)
T 2yqc_A 328 -KLFLRAANIVNHYYSVEFLNKMIPK 352 (486)
T ss_dssp -EESSCEEEEEEEEEEHHHHHHHHHH
T ss_pred -cccccceeEEEEEEeHHHHHHHHHh
Confidence 0123688999999999999885544
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.6e-15 Score=141.39 Aligned_cols=129 Identities=16% Similarity=0.268 Sum_probs=87.2
Q ss_pred hcCceEEEEEcce----EeecCCHHHHHHHHHHhhccC-----------CCccccCCCCCCCCCCccCCCeEec-Ceee-
Q 010874 342 MEHDVQAYIFRDY----WEDIGTIKSFYEANMALTKES-----------PAFHFYDPKTPFYTSPRFLPPTKID-NCRI- 404 (498)
Q Consensus 342 ~~~~I~~~~~~~~----w~dIgt~~dy~~An~~ll~~~-----------~~~~~~~~~~~i~~~~~i~~~~~i~-~~~I- 404 (498)
...++++|...+| |.|+++ |+++|+.++... +.+.+..+.+.+++++.+.++++|+ +|.|
T Consensus 37 ~~~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~a~I~~~v~Ig~~~~I~ 113 (240)
T 3r8y_A 37 ETVQAFVNKKSGVLFGEWSEIKT---ILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRDHVEIGDNAVIM 113 (240)
T ss_dssp TTSEEEECSSEEEEEEEHHHHHH---HHHHTTTTEEEEEEEECCBSBCSCBCCCTTCSSEECTTCEEBSSCEECTTCEEC
T ss_pred CcceEEEcCCCeEEEccHHHHHH---HHHhccceechhhhhhhhhhhccchhhccCCCCEECCCCEECCCcEECCCCEEC
Confidence 3456666665555 888887 888888776432 2222334445556666666666553 3444
Q ss_pred ------eceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcc---------eEEeCCccccchhHHHHhhcCCcccEEe
Q 010874 405 ------KDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD---------TVMLGADYYQTESEIASLLAEGKVPIGV 467 (498)
Q Consensus 405 ------~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~---------svi~~~~~~~~~~~~~s~l~~~~~~v~I 467 (498)
.+++||++|.|+ ++.|. +++||++|+|++++.|.+ ++|+++ |.|
T Consensus 114 ~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~-------------------~~I 174 (240)
T 3r8y_A 114 MNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDD-------------------VVI 174 (240)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTT-------------------CEE
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCC-------------------CEE
Confidence 356666666666 66664 677777777777777766 555555 888
Q ss_pred CCCcEE-eeeEECCCCEECCCcEEeC
Q 010874 468 GRNTKI-RNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 468 g~~~~i-~~~iI~~~~~Ig~~~~i~~ 492 (498)
|.++.| .+++||+++.|++++++..
T Consensus 175 G~~~~I~~~~~Ig~~~~I~~gsvV~~ 200 (240)
T 3r8y_A 175 GANVVVLEGVTVGKGAVVAAGAVVTE 200 (240)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECS
T ss_pred CCCCEECCCcEECCCCEECCCCEECC
Confidence 888888 7899999999999998865
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.8e-12 Score=128.96 Aligned_cols=209 Identities=12% Similarity=0.125 Sum_probs=143.6
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceec---CCcchhHHHHHHHHHh-------------cCCCeEEEEeccCchhHH
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCIN-------------SGINKIFVLTQFNSASLN 156 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI---~G~~pLId~~L~~l~~-------------sGi~~I~Vv~~~~~~~l~ 156 (498)
.++.+|+||||.||||. ...||+|+|| .|+ |++++.++.+.+ .+|.-+++...+..+.+.
T Consensus 34 gkvavvlLAGG~GTRLG---~~~PK~~~~Vgl~~gk-s~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~ 109 (405)
T 3oc9_A 34 GKTALITPAGGQGSRLG---FEHPKGMFVLPFEIPK-SIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEIN 109 (405)
T ss_dssp TCEEEEEECCSBCTTTT---CCSBGGGCEECSSSCE-EHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHH
T ss_pred CceEEEEecCCCccccc---CCCCCccccccCCCCC-cHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHH
Confidence 57899999999999995 4799999999 899 999999988863 477766666678788898
Q ss_pred HHHHh-hccCCCCcCCCCeEEEec-----ccCCCCC-------CCCccccChHHHHHHHH--HHHHhhhcCCCCeEEEEc
Q 010874 157 RHIAR-TYFGNGTNFGDGFVEVLA-----ATQTPGE-------SGKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILC 221 (498)
Q Consensus 157 ~hl~~-~~~~~~~~~~~~~V~v~~-----~~q~~~~-------~~~~~~~Gta~Alr~~~--~~i~~~~~~~~e~~Lvl~ 221 (498)
+++.+ .||+... ..|.++. .....+. .-...+.|+|+..+.+. ..+++......+++++.+
T Consensus 110 ~~f~~~~~fGl~~----~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~n 185 (405)
T 3oc9_A 110 NYFKEHQYFGLSS----EQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHN 185 (405)
T ss_dssp HHHHHTGGGGSCT----TSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEC
T ss_pred HHHHhCcccCCCc----cceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEe
Confidence 99975 3454321 1122211 0000000 00012479999888653 234444344668999999
Q ss_pred Cce-eeecCHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEE-ECCCCCEEEEEeCCCccccccccccccccCCCcccc
Q 010874 222 GDH-LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (498)
Q Consensus 222 GD~-l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~-~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~ 299 (498)
.|. +.....-.++..|.++++++++-+.+...+. ...|++. .|...+|+.+.|.|.. .... ..+ .
T Consensus 186 vDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~d-ek~Gvl~~~dg~~~vvEysei~~e-~e~~-~~~-g--------- 252 (405)
T 3oc9_A 186 VDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFKE-EKVGVLVKEQERIKVVEYTELTDE-LNKQ-LSN-G--------- 252 (405)
T ss_dssp TTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCSTT-CSCCEEEEETTEEEEECGGGCCTT-TTCB-CTT-S---------
T ss_pred CCCcccccCCHHHHHHHHHcCCCEEEEEEECCCCC-CccceEEEECCeeEEEEEeeCCHH-Hhhc-CCC-C---------
Confidence 999 8888888899999999999999888876521 4678776 4544578888887765 2110 001 0
Q ss_pred ccCCcceeeeEEEEcHHHHHHHH
Q 010874 300 RKCPYVASMGVYVFKKDVLFKLL 322 (498)
Q Consensus 300 ~~~~~l~~~GIYif~~~vL~~ll 322 (498)
....+..|.++++|+.++|.+++
T Consensus 253 ~l~fn~~Ni~~h~fs~~fL~~i~ 275 (405)
T 3oc9_A 253 EFIYNCGHISINGYSTSFLEKAA 275 (405)
T ss_dssp CBSSCEEEEEEEEEEHHHHHHHT
T ss_pred ceeeccceeEeeecCHHHHHHhh
Confidence 01235778999999999998876
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-13 Score=139.75 Aligned_cols=197 Identities=13% Similarity=0.091 Sum_probs=125.3
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHhhccCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~-sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~ 170 (498)
|++|.+||||||.|+||. ...||+|+|++|+ |||+|+++.+.+ .++++|+|+++ ..+.+ +.+...
T Consensus 1 Mmki~aIILAaG~ssRmg---~~~pK~ll~l~Gk-PLi~~~l~~l~~~~~~~~IvVvt~-~~~~i-----~~~~~~---- 66 (371)
T 1w55_A 1 MSEMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSS-NITYM-----KKFTKN---- 66 (371)
T ss_dssp -CCEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEES-CHHHH-----HTTCSS----
T ss_pred CCccEEEEECCCCCccCC---CCCCcceEEECCe-EHHHHHHHHHHccCCCCeEEEEcC-CHHHH-----HHHhCC----
Confidence 456899999999999997 3579999999999 999999999998 58999999998 43333 222111
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ee-ecCHHHHHHHHHHcCCCeEEEE
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISC 248 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~-~~dl~~ll~~h~~~~ad~tv~~ 248 (498)
+.++. .. .|..++++.++..++ .+.++++.||. +. ...+..+++.+.+. +..+.+
T Consensus 67 ----v~~v~--~g---------~g~~~sv~~aL~~l~------~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~a~i~~ 123 (371)
T 1w55_A 67 ----YEFIE--GG---------DTRAESLKKALELID------SEFVMVSDVARVLVSKNLFDRLIENLDKA--DCITPA 123 (371)
T ss_dssp ----SEEEE--CC---------SSHHHHHHHHHTTCC------SSEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEE
T ss_pred ----CEEEe--CC---------CChHHHHHHHHHhcC------CCeEEEEeCCcccCCHHHHHHHHHHHHhc--CCEEEE
Confidence 33432 11 377899998875542 47899999998 33 34578888877654 344545
Q ss_pred EecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceee-eEEEEcHHHHHHHHHhhCC
Q 010874 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM-GVYVFKKDVLFKLLRWRYP 327 (498)
Q Consensus 249 ~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-GIYif~~~vL~~ll~~~~~ 327 (498)
.+..+. +.. + .+.+... .+... .-++|+.+.|..+++...
T Consensus 124 ~~~~d~-------vk~-----v---~~t~~r~-----------------------~l~~~~~P~~f~~~~l~~~~~~~~- 164 (371)
T 1w55_A 124 LKVADT-------TLF-----D---NEALQRE-----------------------KIKLIQTPQISKTKLLKKALDQNL- 164 (371)
T ss_dssp ECCCSC-------EEE-----T---TEEECGG-----------------------GCCEECSCEEEEHHHHHHHTSSCC-
T ss_pred EEeecC-------eee-----e---eeecCcc-----------------------ceeecCCcceecHHHHHHHHHhcc-
Confidence 554331 110 0 0111110 01111 125688887776554311
Q ss_pred CCCchhhhhHHHHh-hcCceEEEEEcceEeecCCHHHHHHHH
Q 010874 328 TSNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (498)
Q Consensus 328 ~~~df~~dii~~~i-~~~~I~~~~~~~~w~dIgt~~dy~~An 368 (498)
. .++....+. ...++..+..++.|.||+||+||..|+
T Consensus 165 --~--~td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~Ae 202 (371)
T 1w55_A 165 --E--FTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD 202 (371)
T ss_dssp --C--CSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred --c--ccCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHHH
Confidence 0 122221111 235777777677899999999999887
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.7e-12 Score=118.38 Aligned_cols=115 Identities=13% Similarity=0.158 Sum_probs=82.6
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|.|||||||.|+||. .||+|+|++|+ |||+|+++.+..+ +|+|++++ .+.+ +.+.+. ++
T Consensus 1 m~aiILAgG~s~Rmg-----~~K~ll~~~G~-pli~~~~~~l~~~---~vvvv~~~-~~~~-~~~~~~-------~~--- 59 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGK-KLIEWVLEKYSPF---QTVFVCRD-EKQA-EKLSSR-------YE--- 59 (208)
T ss_dssp CEEEEECCCCCTTTT-----SCGGGCEETTE-EHHHHHHHHHTTS---EEEEECSS-HHHH-HHHHTT-------SC---
T ss_pred CEEEEECCCchhhCC-----CCCcccEECCe-eHHHHHHHHhcCC---CEEEEECC-HHHH-HHHHHh-------cC---
Confidence 689999999999997 68999999999 9999999999876 99999974 2333 233221 22
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeec-CHHHHHHHHHHcCCCeEE
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDADITI 246 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~-dl~~ll~~h~~~~ad~tv 246 (498)
+.++.... . -.|...+|+.++..+ .+.+ ++.||+ +.+. .+..+++.+.+.++++.+
T Consensus 60 ~~~v~d~~-~-------~~G~~~si~~gl~~~-------~~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~ 117 (208)
T 3ngw_A 60 AEFIWDLH-K-------GVGSIAGIHAALRHF-------GSCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALI 117 (208)
T ss_dssp SCEECCTT-C-------CCSHHHHHHHHHHHH-------SSEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CeEEecCC-C-------CCChHHHHHHHHHHc-------CCCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEE
Confidence 23443222 1 148889999987655 2677 999999 4444 478888877665666544
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.8e-13 Score=139.63 Aligned_cols=229 Identities=10% Similarity=0.034 Sum_probs=136.9
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEc----CceeeecCHHHHHHHHHHc--C---------CCeEEEEEecCCCCCC
Q 010874 193 QGTADAVRQFTWVFEDAKNRNIENVAILC----GDHLYRMDYMDFIQSHVDR--D---------ADITISCAAVGESRAS 257 (498)
Q Consensus 193 ~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~----GD~l~~~dl~~ll~~h~~~--~---------ad~tv~~~~~~~~~~~ 257 (498)
++++.+++.+.+. . ..++|+. +|.....++.+++..|++. + ...|+.+..+.+.-.+
T Consensus 124 L~~a~~i~~~d~~-------~-~~t~V~~~~~kpd~~~~~~l~~l~~~h~~~~~g~~~~~~~ig~~~ti~L~~l~d~li~ 195 (496)
T 3c8v_A 124 LHDDEVITIKDSF-------L-NKTLVHSNSHDPESPEEFTIRNTVAMPYANIHGSLTEGSFIGSFATVDLSTIHNSVVR 195 (496)
T ss_dssp CSSCCEEEEESCE-------E-ESCEEESCCCCTTCTTEEEEESCEECTTCEEESCCEESCEECTTCEEESCEEESCEEC
T ss_pred hhHhhhHHhhhhc-------C-CceEEeccccCCCCccccchHHHHHHHHHhhcCCcccceEecccceeeHHHHHHHHHH
Confidence 6777776544211 0 1237888 5887766676667777652 2 2334444445442124
Q ss_pred CceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCchhhhhH
Q 010874 258 DYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEII 337 (498)
Q Consensus 258 ~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df~~dii 337 (498)
.|+.+. .|++..+.++|...-. .+......+|.|+++.|..++.+.. ..+
T Consensus 196 ~~~~~~---~g~i~~~~~~pg~~~i-------------------~~~~~lnf~Y~f~~~~L~~~l~~~~-~~n------- 245 (496)
T 3c8v_A 196 YFSYVQ---TGELVGKCVEPGQIWI-------------------KSGDELEFHYSFDKAILDKYISQEA-GSC------- 245 (496)
T ss_dssp TTCEEE---SSEEESCEECTTEEEE-------------------ECTTSEEEEEECCHHHHTTTCBCCT-TSC-------
T ss_pred HHhhhc---CCceEEeeecCCceec-------------------ccccccceEEEcCHHHHHHHHhhcc-Ccc-------
Confidence 566652 4677777777753100 1123345699999988865432211 000
Q ss_pred HHHhhcCceEEEEEcceEeec--CCHHHHHHHHHHhhcc----CCCccccCCCCCCCCCCccCCCeEec-CeeeeceEEc
Q 010874 338 PAAIMEHDVQAYIFRDYWEDI--GTIKSFYEANMALTKE----SPAFHFYDPKTPFYTSPRFLPPTKID-NCRIKDAIIS 410 (498)
Q Consensus 338 ~~~i~~~~I~~~~~~~~w~dI--gt~~dy~~An~~ll~~----~~~~~~~~~~~~i~~~~~i~~~~~i~-~~~I~~s~Ig 410 (498)
.++.|.|+ ..++++.++....... ...-.++++.+.+...+.|++++.|. ++.|.+++||
T Consensus 246 -------------~~g~~~Dll~~~~~d~~~i~~~~~~~~~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG 312 (496)
T 3c8v_A 246 -------------PTGVLMEFVEVRQEDFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMG 312 (496)
T ss_dssp -------------CBSHHHHHHHTTTHHHHHHHHC--------CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEEC
T ss_pred -------------ccceeeehhccchHHHHHHhhccccccCcccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEec
Confidence 01223232 2344444432211100 01112333444333445556666663 4667788888
Q ss_pred CCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeee-----EECCCCEE
Q 010874 411 HGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC-----IIDKNVKI 484 (498)
Q Consensus 411 ~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~-----iI~~~~~I 484 (498)
++|.|+ +|+|.+|+||++|.|+++|.|.+++|+++ |.||.+|.|..+ +||++|.|
T Consensus 313 ~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~-------------------v~IG~~a~I~~~~~~~v~IG~~a~I 373 (496)
T 3c8v_A 313 KGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDM-------------------IFTGFNSFLQGSESSPLKIGDGCVV 373 (496)
T ss_dssp TTCEECTTCEEEEEEEEESCEECTTCEEESEEEEET-------------------CEECTTCEEECCSSSCEEECTTCEE
T ss_pred CCCEECCCceEeceEeCCCCEECCCcEEcCceECCC-------------------cEECCCCEEeCCCCcceEECCCCEE
Confidence 888888 78888888888888888888888888877 899999999755 89999999
Q ss_pred CCCcEEe
Q 010874 485 GKDVVIV 491 (498)
Q Consensus 485 g~~~~i~ 491 (498)
|++++|.
T Consensus 374 GagsvV~ 380 (496)
T 3c8v_A 374 MPHTIID 380 (496)
T ss_dssp CTTCEEE
T ss_pred CCCCEEe
Confidence 9999988
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-09 Score=101.26 Aligned_cols=120 Identities=16% Similarity=0.192 Sum_probs=85.5
Q ss_pred eEeecCCHHHHHHHHHHhhccCCC-ccccCCCCCCCCCCccC--CCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEEC
Q 010874 354 YWEDIGTIKSFYEANMALTKESPA-FHFYDPKTPFYTSPRFL--PPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVG 426 (498)
Q Consensus 354 ~w~dIgt~~dy~~An~~ll~~~~~-~~~~~~~~~i~~~~~i~--~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg 426 (498)
+..-++++...++....+.+.... ..++++.+.+..++.++ +++.|. ++.|. ++.||++|.|+ ++.|. +++||
T Consensus 50 ~~iaig~~~~r~~~~~~l~~~~~~~~~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig 129 (194)
T 3bfp_A 50 FFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIG 129 (194)
T ss_dssp EEECCCCHHHHHHHHHHHHTTTCCBCCEECTTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCccccccCCeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEEC
Confidence 345667776666665555543222 23556666666677777 777774 46664 68888888887 77775 78888
Q ss_pred CCCEECCCCEEcc-eEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 427 ERSRLDYGVELKD-TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 427 ~~~~Ig~~~~i~~-svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
++|+|+++|.|.+ +.|.++ +.||.++.|. ++.|++++.||+++++..
T Consensus 130 ~~~~I~~~~~i~~~~~Ig~~-------------------~~Ig~~~~i~~~~~Ig~~~~Igagsvv~~ 178 (194)
T 3bfp_A 130 EFSHVSVGAKCAGNVKIGKN-------------------CFLGINSCVLPNLSLADDSILGGGATLVK 178 (194)
T ss_dssp TTCEECTTCEECTTCEECTT-------------------CEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred CCCEECCCCEECCCcEECCC-------------------CEEcCCCEECCCCEECCCCEECCCCEEcc
Confidence 8888888888876 656655 7888888774 788999999999998853
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.2e-12 Score=133.74 Aligned_cols=84 Identities=12% Similarity=0.162 Sum_probs=70.1
Q ss_pred CccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEe
Q 010874 391 PRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 467 (498)
Q Consensus 391 ~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~I 467 (498)
+.+.+++.|. .+.+. ++.||++|.|+ +|.|.+++||++|.|+++|+|.+++|+++ +.|
T Consensus 274 ~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~-------------------~~I 334 (496)
T 3c8v_A 274 AGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERN-------------------CVT 334 (496)
T ss_dssp --CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEES-------------------CEE
T ss_pred cccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCC-------------------CEE
Confidence 4455556663 34443 79999999999 89999999999999999999999999998 899
Q ss_pred CCCcEEeeeEECCCCEECCCcEEeCC
Q 010874 468 GRNTKIRNCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 468 g~~~~i~~~iI~~~~~Ig~~~~i~~~ 493 (498)
|+++.|.+|+||++|.||++++|.+.
T Consensus 335 g~~a~I~gv~IGd~v~IG~~a~I~~~ 360 (496)
T 3c8v_A 335 AHGGKIINAHLGDMIFTGFNSFLQGS 360 (496)
T ss_dssp CTTCEEESEEEEETCEECTTCEEECC
T ss_pred CCCcEEcCceECCCcEECCCCEEeCC
Confidence 99999988999999999998888764
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-09 Score=110.45 Aligned_cols=84 Identities=8% Similarity=0.064 Sum_probs=39.3
Q ss_pred eEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEECCCC
Q 010874 354 YWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERS 429 (498)
Q Consensus 354 ~w~dIgt~~dy~~An~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~ 429 (498)
.|.-+.+|...+.....++.+.+....++|.+.+.+++.+++++.|. ++.|. ++.||++|+|+ +|.|. ++.||++|
T Consensus 78 ~~i~~~~p~~~~~~~~~~~~~~~~~~~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~ 157 (357)
T 4e79_A 78 NFIIVDNPYLAFAILTHVFDKKISSTGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDC 157 (357)
T ss_dssp EEEECSCHHHHHHHHHTTSSCCCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSC
T ss_pred cEEEECCHHHHHHHHHHHhccccccCeeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCC
Confidence 35667888866655555554433224455555555555555444442 23332 24444444443 33332 33444444
Q ss_pred EECCCCEE
Q 010874 430 RLDYGVEL 437 (498)
Q Consensus 430 ~Ig~~~~i 437 (498)
.|++++.|
T Consensus 158 ~I~~~~~I 165 (357)
T 4e79_A 158 FIDSYVTI 165 (357)
T ss_dssp EECTTCEE
T ss_pred EECCCcEE
Confidence 33333333
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-09 Score=100.86 Aligned_cols=66 Identities=9% Similarity=0.222 Sum_probs=37.5
Q ss_pred EEcCCCEEC-ceEEe------ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEEC
Q 010874 408 IISHGCFLR-ECTVE------HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIID 479 (498)
Q Consensus 408 ~Ig~~~~I~-~~~v~------~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~ 479 (498)
+||++|.|+ ++.|. +++||++|.||+++.|.+++|.++ +.||.++.|. ++.|+
T Consensus 74 ~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~Ig~~-------------------~~Ig~~~~I~~~~~Ig 134 (191)
T 3ixc_A 74 EVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNN-------------------AFVGMGSIVMDRAVME 134 (191)
T ss_dssp EECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCEECTT-------------------CEECTTCEECTTCEEC
T ss_pred EECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCEECCC-------------------CEECCCCEEeCCeEEC
Confidence 445555554 44443 455555555555555555544444 6666666664 36677
Q ss_pred CCCEECCCcEEeC
Q 010874 480 KNVKIGKDVVIVN 492 (498)
Q Consensus 480 ~~~~Ig~~~~i~~ 492 (498)
+++.||++++|.+
T Consensus 135 ~~~~Ig~gsvV~~ 147 (191)
T 3ixc_A 135 EGSMLAAGSLLTR 147 (191)
T ss_dssp TTCEECTTCEECT
T ss_pred CCCEECCCCEECC
Confidence 7777777766653
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-09 Score=98.38 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=43.5
Q ss_pred eEEcCCCEEC-ceEEe-----ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEEC
Q 010874 407 AIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIID 479 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~-----~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~ 479 (498)
++||++|.|+ ++.|. +++||++|.|++++.|.+++|+++ +.||.++.|. ++.||
T Consensus 52 v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~-------------------~~Ig~~~~i~~~~~Ig 112 (173)
T 1xhd_A 52 TIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKD-------------------ALIGMGSIILDGAEIG 112 (173)
T ss_dssp EEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTT-------------------CEECTTCEECTTCEEC
T ss_pred EEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCC-------------------CEEcCCCEEcCCCEEC
Confidence 5566666665 55554 556666666666666666555555 6777777765 57777
Q ss_pred CCCEECCCcEEeC
Q 010874 480 KNVKIGKDVVIVN 492 (498)
Q Consensus 480 ~~~~Ig~~~~i~~ 492 (498)
+++.||+++++..
T Consensus 113 ~~~~Ig~~s~V~~ 125 (173)
T 1xhd_A 113 EGAFIGAGSLVSQ 125 (173)
T ss_dssp TTCEECTTCEECT
T ss_pred CCCEECCCCEECC
Confidence 7777777777753
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-09 Score=106.36 Aligned_cols=49 Identities=8% Similarity=0.096 Sum_probs=33.6
Q ss_pred cEECCCCEECCCCEEcc-eEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEE
Q 010874 423 SIVGERSRLDYGVELKD-TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI 490 (498)
Q Consensus 423 siIg~~~~Ig~~~~i~~-svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i 490 (498)
++||++|.||++|.|.+ ++|.++ |.||.++.|.++.||+++.||++++|
T Consensus 141 v~IG~~v~Ig~~~~I~~~~~Ig~~-------------------v~IG~~a~I~~v~Ig~~~~IgagsvV 190 (247)
T 1qre_A 141 VYIGNNVSLAHQSQVHGPAAVGDD-------------------TFIGMQAFVFKSKVGNNCVLEPRSAA 190 (247)
T ss_dssp EEECTTCEECTTCEEEEEEEECTT-------------------CEECTTCEEEEEEECTTCEECTTCEE
T ss_pred eEECCCCEECCCCEEcCCcEECCC-------------------CEECCCCEEeceEECCCCEECCCCEE
Confidence 55666666666666655 444444 77888877766778888888888877
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-09 Score=100.89 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=50.6
Q ss_pred eEEcCCCEEC-ceEE------------eccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEE
Q 010874 407 AIISHGCFLR-ECTV------------EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI 473 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v------------~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i 473 (498)
+.||++|.|+ ++.| .+++||++|.|+++|.|.+++|.++ +.||.++.|
T Consensus 55 i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~-------------------~~Ig~~~~I 115 (187)
T 3r3r_A 55 VAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNR-------------------VLVGMGSIV 115 (187)
T ss_dssp EEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEESCEECSS-------------------EEECTTCEE
T ss_pred EEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeCcEECCC-------------------CEECCCCEE
Confidence 3777777777 6666 5677777777777777777777766 888888888
Q ss_pred -eeeEECCCCEECCCcEEeC
Q 010874 474 -RNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 474 -~~~iI~~~~~Ig~~~~i~~ 492 (498)
.++.||+++.||++++|.+
T Consensus 116 ~~~~~Ig~~~~Ig~~s~V~~ 135 (187)
T 3r3r_A 116 LDGAIIEDDVMIGAGSLVPQ 135 (187)
T ss_dssp CTTCEECSSEEECTTCEECT
T ss_pred CCCCEECCCCEECCCCEECC
Confidence 4688888888888888765
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.8e-09 Score=105.97 Aligned_cols=97 Identities=14% Similarity=0.153 Sum_probs=62.5
Q ss_pred eecCCHHHHHHHHHHhhccC-CCccccCCCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEE-eccEECCCCE
Q 010874 356 EDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTV-EHSIVGERSR 430 (498)
Q Consensus 356 ~dIgt~~dy~~An~~ll~~~-~~~~~~~~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v-~~siIg~~~~ 430 (498)
.-+.+|...+.....++... .....+++.+.+.+++.++++++|. ++.|. ++.||++|+|+ ++.| .++.||++|.
T Consensus 74 ~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~ 153 (341)
T 3eh0_A 74 LVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSR 153 (341)
T ss_dssp EECSCHHHHHHHHHHHHCCCCCSCCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred EEeCCHHHHHHHHHHHhcccCCccCccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcE
Confidence 44678877665555555543 3334566677777777777777664 45565 57777777777 6777 5777777777
Q ss_pred ECCCCEE-cceEEeCCccccchh
Q 010874 431 LDYGVEL-KDTVMLGADYYQTES 452 (498)
Q Consensus 431 Ig~~~~i-~~svi~~~~~~~~~~ 452 (498)
|++++.| .++.|.++..+...+
T Consensus 154 I~~~~~I~~~~~IG~~~~I~~g~ 176 (341)
T 3eh0_A 154 LWANVTIYHEIQIGQNCLIQSGT 176 (341)
T ss_dssp ECSSCEECTTCEECSSCEECTTC
T ss_pred ECCCcEECCCCEECCccEEcCCc
Confidence 7777777 566666664444444
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-09 Score=98.36 Aligned_cols=85 Identities=18% Similarity=0.333 Sum_probs=63.0
Q ss_pred CCCCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEec----cEECCCCEECCCCEEc-----ceEEeCCccccchhHH
Q 010874 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEH----SIVGERSRLDYGVELK-----DTVMLGADYYQTESEI 454 (498)
Q Consensus 385 ~~i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~----siIg~~~~Ig~~~~i~-----~svi~~~~~~~~~~~~ 454 (498)
..+..++.+.|++.+. .++.||++|.|+ ++.|.. ++||++|.|+++|.|. +++|+++
T Consensus 13 ~~ig~~~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~--------- 79 (173)
T 1xhd_A 13 PKIASSAFIADYVTIT----GDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDD--------- 79 (173)
T ss_dssp CEECTTCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTT---------
T ss_pred CEECCCcEECCCCEEE----CCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCC---------
Confidence 3344444444444443 378899999998 788864 8999999999999998 7888887
Q ss_pred HHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 455 ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 455 ~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
+.|++++.|.+++||+++.||++++|.+
T Consensus 80 ----------~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~ 107 (173)
T 1xhd_A 80 ----------VTVGHQVILHSCHIKKDALIGMGSIILD 107 (173)
T ss_dssp ----------CEECTTCEEESCEECTTCEECTTCEECT
T ss_pred ----------CEECCCCEEeCCEECCCCEEcCCCEEcC
Confidence 7777777777777777777777776653
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.1e-09 Score=99.69 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=56.9
Q ss_pred CCccCCCeEec-Ceeee-----ceEEcCCCEEC-ceEEec---------------cEECCCCEECCCCEEcc-eEEeCCc
Q 010874 390 SPRFLPPTKID-NCRIK-----DAIISHGCFLR-ECTVEH---------------SIVGERSRLDYGVELKD-TVMLGAD 446 (498)
Q Consensus 390 ~~~i~~~~~i~-~~~I~-----~s~Ig~~~~I~-~~~v~~---------------siIg~~~~Ig~~~~i~~-svi~~~~ 446 (498)
.+.|++++.|. ++.|. +++||++|.|+ ++.|.. ++||++|.|+++|.|.+ ++|+++
T Consensus 57 ~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I~~~v~Ig~~- 135 (213)
T 3kwd_A 57 DVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGPAYIGDG- 135 (213)
T ss_dssp SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEEEEEEEECTT-
T ss_pred ceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEEcCCCEECCC-
Confidence 33444444442 34442 36777777777 666653 67777777777777776 555555
Q ss_pred cccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEe
Q 010874 447 YYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 447 ~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~ 491 (498)
|.||.++.|.+++||+++.||++++|.
T Consensus 136 ------------------v~IG~~a~I~~~~Ig~~~~Igags~V~ 162 (213)
T 3kwd_A 136 ------------------CFIGFRSTVFNARVGAGCVVMMHVLIQ 162 (213)
T ss_dssp ------------------CEECTTCEEEEEEECTTCEECSSCEEE
T ss_pred ------------------CEECCCCEEeCcEECCCCEEcCCCEEC
Confidence 788888888888888888888888874
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-09 Score=99.58 Aligned_cols=89 Identities=15% Similarity=0.257 Sum_probs=64.4
Q ss_pred cCCCCCCCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEEc------ceEEeCCcccc
Q 010874 381 YDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELK------DTVMLGADYYQ 449 (498)
Q Consensus 381 ~~~~~~i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i~------~svi~~~~~~~ 449 (498)
.++...+..++.+.+++.|.+ ++.||++|.|+ ++.|. +.+||++|.|+++|.|. +++|+++
T Consensus 30 ~~~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~---- 101 (191)
T 3ixc_A 30 AGVSPSVDSTAFIAGNARIIG----DVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKF---- 101 (191)
T ss_dssp TTBCCEECTTSEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTT----
T ss_pred cCCCCEECCCCEECCCCEEeC----CcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCC----
Confidence 334444555555555555533 67888888888 77775 34999999999999998 7888888
Q ss_pred chhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 450 TESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 450 ~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
+.||+++.|.+++||+++.||++++|.+
T Consensus 102 ---------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~ 129 (191)
T 3ixc_A 102 ---------------VTIGHSCILHACTLGNNAFVGMGSIVMD 129 (191)
T ss_dssp ---------------CEECTTCEECSCEECTTCEECTTCEECT
T ss_pred ---------------CEECCCCEEECCEECCCCEECCCCEEeC
Confidence 6777777777777777777777766654
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.8e-09 Score=97.55 Aligned_cols=67 Identities=13% Similarity=0.187 Sum_probs=52.1
Q ss_pred eEEcCCCEEC-ceEEe-----ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEEC
Q 010874 407 AIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIID 479 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~-----~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~ 479 (498)
+.||++|.|+ ++.|. +++||++|.|+++|.|.+++|+++ +.||.++.|. +++||
T Consensus 50 ~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~-------------------~~Ig~~~~i~~~~~Ig 110 (173)
T 1v3w_A 50 IYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNY-------------------VIIGISSVILDGAKIG 110 (173)
T ss_dssp EEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSS-------------------EEECTTCEECTTCEEC
T ss_pred EEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCC-------------------CEECCCCEEeCCCEEC
Confidence 7788888887 77775 578888888888888888877777 7888887764 57788
Q ss_pred CCCEECCCcEEeC
Q 010874 480 KNVKIGKDVVIVN 492 (498)
Q Consensus 480 ~~~~Ig~~~~i~~ 492 (498)
+++.||+++++..
T Consensus 111 ~~~~Ig~~s~V~~ 123 (173)
T 1v3w_A 111 DHVIIGAGAVVPP 123 (173)
T ss_dssp SSEEECTTCEECT
T ss_pred CCCEECCCCEECC
Confidence 8888888777764
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.9e-09 Score=95.93 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=62.6
Q ss_pred CCCCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEec----cEECCCCEECCCCEEc-----ceEEeCCccccchhHH
Q 010874 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEH----SIVGERSRLDYGVELK-----DTVMLGADYYQTESEI 454 (498)
Q Consensus 385 ~~i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~----siIg~~~~Ig~~~~i~-----~svi~~~~~~~~~~~~ 454 (498)
..+.+++.+.|++.+.+ ++.||++|.|+ ++.|.. ++||++|.|+++|.|. +++|+++
T Consensus 11 ~~i~~~~~I~~~a~i~g----~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~--------- 77 (173)
T 1v3w_A 11 PRIHPSAFVDENAVVIG----DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEY--------- 77 (173)
T ss_dssp CEECTTCEECTTSEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSS---------
T ss_pred CEECCCCEECCCCEEeC----CEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCC---------
Confidence 34555556666655533 67888888888 777764 8999999999999997 5777777
Q ss_pred HHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 455 ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 455 ~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
+.|++++.|.+++||+++.||+++.|.+
T Consensus 78 ----------~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~ 105 (173)
T 1v3w_A 78 ----------VTIGHNAMVHGAKVGNYVIIGISSVILD 105 (173)
T ss_dssp ----------CEECTTCEEESCEECSSEEECTTCEECT
T ss_pred ----------CEECCCCEECCCEECCCCEECCCCEEeC
Confidence 6777777777777777777776666554
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-09 Score=108.70 Aligned_cols=42 Identities=5% Similarity=0.122 Sum_probs=26.7
Q ss_pred ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCcc
Q 010874 406 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADY 447 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~ 447 (498)
++.||++|+|+ +|.|.+|+||++++|+++++|+++++.++..
T Consensus 83 ~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~ 125 (334)
T 2pig_A 83 PCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECA 125 (334)
T ss_dssp SCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEE
T ss_pred eeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeE
Confidence 46666666666 6666666666666666666666666555443
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=98.89 E-value=5.4e-09 Score=96.61 Aligned_cols=87 Identities=13% Similarity=0.221 Sum_probs=65.2
Q ss_pred CCCCCCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEE------------cceEEeCC
Q 010874 383 PKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVEL------------KDTVMLGA 445 (498)
Q Consensus 383 ~~~~i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i------------~~svi~~~ 445 (498)
....+..++.+.+++++.+ ++.||++|.|+ ++.|. +++||++|.|+++|.| .+++|+++
T Consensus 14 ~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~ 89 (187)
T 3r3r_A 14 LFPGIGQRVMIDTSSVVIG----DVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGED 89 (187)
T ss_dssp BCCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSS
T ss_pred cCcccCCCeEECCCCEEEC----ceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCC
Confidence 3445555666666666533 67888888888 77775 3599999999999999 67777777
Q ss_pred ccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 446 DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 446 ~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
+.||+++.|.+++||+++.||++++|.+
T Consensus 90 -------------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~ 117 (187)
T 3r3r_A 90 -------------------VTVGHKVMLHGCTIGNRVLVGMGSIVLD 117 (187)
T ss_dssp -------------------CEECTTCEEESCEECSSEEECTTCEECT
T ss_pred -------------------CEECCCCEEeCcEECCCCEECCCCEECC
Confidence 7888888888777777777777777743
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-08 Score=96.29 Aligned_cols=119 Identities=14% Similarity=0.153 Sum_probs=83.2
Q ss_pred EeecCCHHHHHHHHHHhhccCCC-ccccCCCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEECCCC
Q 010874 355 WEDIGTIKSFYEANMALTKESPA-FHFYDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERS 429 (498)
Q Consensus 355 w~dIgt~~dy~~An~~ll~~~~~-~~~~~~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~ 429 (498)
+.-|++++...+....+.+.... ..+.++.+.+...+.+++++.|. ++.|. ++.||++|.|+ ++.|. +++||++|
T Consensus 75 ~iAIg~~~~R~~i~~~l~~~g~~~~~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~ 154 (220)
T 4ea9_A 75 FVAIGDNRLRQKLGRKARDHGFSLVNAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAAC 154 (220)
T ss_dssp EECCCCHHHHHHHHHHHHHTTCEECCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred EEecCCHHHHHHHHHHHHhcCCCcCCcCCCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCC
Confidence 44577776666665555543222 23455666666666666666663 45554 68888888888 77775 68888888
Q ss_pred EECCCCEEcc-eEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 430 RLDYGVELKD-TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 430 ~Ig~~~~i~~-svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+|++++.|.+ +.|.++ +.||.++.|. ++.||+++.||+++++..
T Consensus 155 ~i~~~~~i~~~v~Ig~~-------------------~~Ig~~~~i~~~~~Ig~~~~igagsvv~~ 200 (220)
T 4ea9_A 155 HLGPASALAGGVSVGER-------------------AFLGVGARVIPGVTIGADTIVGAGGVVVR 200 (220)
T ss_dssp EECTTCEECSSCEECTT-------------------CEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred EECCCCEEcCCCEECCC-------------------CEECCCCEEcCCcEECCCCEECCCCEEcc
Confidence 8888888877 455444 7888888885 688999999999988865
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.3e-09 Score=101.44 Aligned_cols=87 Identities=18% Similarity=0.255 Sum_probs=52.2
Q ss_pred ceEEcCCCEEC-ceEE-eccEECCCCEECCCCEEc-ceEEeCCccccchhHHHHh-hcCCcccEEeCCCcEEe-eeEECC
Q 010874 406 DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELK-DTVMLGADYYQTESEIASL-LAEGKVPIGVGRNTKIR-NCIIDK 480 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~~s~-l~~~~~~v~Ig~~~~i~-~~iI~~ 480 (498)
++.||+||+|+ ++.| .+++||++|.|+.+|.|. +++|+++.+++..+.+... -.....|+.||++|+|+ +|+|.+
T Consensus 103 ~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~ 182 (240)
T 3r8y_A 103 HVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLE 182 (240)
T ss_dssp SCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECT
T ss_pred CcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECC
Confidence 67888888886 7777 477888888888888885 6777666443333322110 00011235666666664 566666
Q ss_pred CCEECCCcEEeC
Q 010874 481 NVKIGKDVVIVN 492 (498)
Q Consensus 481 ~~~Ig~~~~i~~ 492 (498)
+++||++++|..
T Consensus 183 ~~~Ig~~~~I~~ 194 (240)
T 3r8y_A 183 GVTVGKGAVVAA 194 (240)
T ss_dssp TCEECTTCEECT
T ss_pred CcEECCCCEECC
Confidence 666666666654
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-08 Score=103.79 Aligned_cols=83 Identities=19% Similarity=0.218 Sum_probs=44.2
Q ss_pred EeecCCHHHHHHHHHHhhccCCC-ccccCCCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEECCCC
Q 010874 355 WEDIGTIKSFYEANMALTKESPA-FHFYDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERS 429 (498)
Q Consensus 355 w~dIgt~~dy~~An~~ll~~~~~-~~~~~~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~ 429 (498)
+.-+.+|+..+.....++...+. ...+++.+.+.+++.++++++|. ++.|. ++.||+||+|+ +|.|. ++.||++|
T Consensus 95 ~l~~~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~~ 174 (372)
T 3pmo_A 95 ALVVANPYLAYASLSHLFDRKPKAAAGIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGG 174 (372)
T ss_dssp EEECSCHHHHHHHHHGGGCCCCCCCSEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred EEEECCHHHHHHHHHHHhccccccccccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCc
Confidence 45567787766555555554332 23556666666666666666653 34443 45555555554 44442 44444444
Q ss_pred EECCCCEE
Q 010874 430 RLDYGVEL 437 (498)
Q Consensus 430 ~Ig~~~~i 437 (498)
.|++++.|
T Consensus 175 ~I~~~~~I 182 (372)
T 3pmo_A 175 WLAPRVTL 182 (372)
T ss_dssp EECTTCEE
T ss_pred ccCCCcEE
Confidence 44444444
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.4e-09 Score=97.33 Aligned_cols=66 Identities=12% Similarity=0.230 Sum_probs=42.0
Q ss_pred EEcCCCEEC-ceEEecc------------EECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEE-
Q 010874 408 IISHGCFLR-ECTVEHS------------IVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI- 473 (498)
Q Consensus 408 ~Ig~~~~I~-~~~v~~s------------iIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i- 473 (498)
.||++|.|+ ++.|..+ +||++|.|+++|.|.+++|.++ +.||.++.|
T Consensus 60 ~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~-------------------~~Ig~~~~i~ 120 (189)
T 3r1w_A 60 RIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNR-------------------VLIGMKSMIM 120 (189)
T ss_dssp EECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEESCEECSS-------------------EEECTTCEEC
T ss_pred EECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeCcEECCC-------------------cEECCCCEEc
Confidence 556666666 5555433 6666666666666666555555 677777766
Q ss_pred eeeEECCCCEECCCcEEeC
Q 010874 474 RNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 474 ~~~iI~~~~~Ig~~~~i~~ 492 (498)
.++.||+++.||++++|.+
T Consensus 121 ~~v~Ig~~~~Ig~~s~V~~ 139 (189)
T 3r1w_A 121 DGAIVEDEVIVAAGATVSP 139 (189)
T ss_dssp TTCEECSSCEECTTCEECT
T ss_pred CCCEECCCCEEccCCEECC
Confidence 3667777777777777654
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-09 Score=108.09 Aligned_cols=102 Identities=15% Similarity=0.202 Sum_probs=44.8
Q ss_pred CCCCCccCCCeEec-CeeeeceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcc
Q 010874 387 FYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV 463 (498)
Q Consensus 387 i~~~~~i~~~~~i~-~~~I~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~ 463 (498)
+++.+.+.++++|+ +|.|.+.+|+.+|.|| +|.|. +++||++|.||++|.|.......+.... ...-...++++
T Consensus 148 I~p~a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~-~~~~~v~IGd~-- 224 (316)
T 3tk8_A 148 VVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEP-LQANPVIIEDN-- 224 (316)
T ss_dssp ECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSS-TTSCCCEECTT--
T ss_pred EeCCeEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCccc-ccCCCcEECCC--
Confidence 34444444455552 4555544555555555 45553 2555555555555555433222210000 00000011111
Q ss_pred cEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 464 PIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 464 ~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||.+|.|. ++.||+++.||+|++|..
T Consensus 225 -v~IG~~a~I~~gv~IG~g~vIgagsvV~~ 253 (316)
T 3tk8_A 225 -CFIGARSEVVEGVIVEENSVISMGVYLGQ 253 (316)
T ss_dssp -CEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred -CEECCCCEEcCCCEECCCCEEcCCCEEcC
Confidence 4555555442 455666666666665543
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=98.85 E-value=8.9e-09 Score=95.23 Aligned_cols=86 Identities=19% Similarity=0.316 Sum_probs=64.7
Q ss_pred CCCCCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEEcce------------EEeCCc
Q 010874 384 KTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDT------------VMLGAD 446 (498)
Q Consensus 384 ~~~i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i~~s------------vi~~~~ 446 (498)
...+..++.+.++++|.+ ++.||++|.|+ ++.|. +++||++|.|+++|.|..+ +|+++
T Consensus 19 ~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~- 93 (189)
T 3r1w_A 19 SPKLGERVFVDRSSVIIG----DVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDD- 93 (189)
T ss_dssp CCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSS-
T ss_pred CCEECCCcEECCCCEEee----eeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCC-
Confidence 344555666666666543 67888888888 77774 4599999999999999775 66666
Q ss_pred cccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 447 YYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 447 ~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
+.||+++.|.+++||+++.||++++|.+
T Consensus 94 ------------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~ 121 (189)
T 3r1w_A 94 ------------------VTIGHQAMLHGCTIGNRVLIGMKSMIMD 121 (189)
T ss_dssp ------------------EEECTTCEEESCEECSSEEECTTCEECT
T ss_pred ------------------CEECCCCEEeCcEECCCcEECCCCEEcC
Confidence 7888888888888888888877777753
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3.7e-09 Score=106.73 Aligned_cols=102 Identities=18% Similarity=0.206 Sum_probs=68.5
Q ss_pred CCCccCCCeEe-cCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEE-cceEEeCC----------ccccchhHH-
Q 010874 389 TSPRFLPPTKI-DNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVEL-KDTVMLGA----------DYYQTESEI- 454 (498)
Q Consensus 389 ~~~~i~~~~~i-~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i-~~svi~~~----------~~~~~~~~~- 454 (498)
..+.|+++++| .+|.|.+|+|++||.|+ +++|++|+|+++|.|+.++++ .++.++++ .++.+.+.+
T Consensus 82 g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~I~~~a~I~ 161 (334)
T 2pig_A 82 QPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVN 161 (334)
T ss_dssp SSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEEECTTCEEE
T ss_pred eeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeEECCCCEEe
Confidence 33344444444 24677789999999999 899999999999999888876 56777665 222222222
Q ss_pred HHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 010874 455 ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 455 ~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~ 493 (498)
.++++++ +.|+.+|.|.+++|+.++.|++++.+.+.
T Consensus 162 ~s~I~~g---~~I~~~a~I~~svI~~~a~I~~~a~V~~~ 197 (334)
T 2pig_A 162 HSRIVHQ---VQLYGNATITHAFIEHRAEVFDFALIEGD 197 (334)
T ss_dssp SCEEETT---CEECTTCEEESEEECTTCEECTTCEEECC
T ss_pred ccEEcCC---CEEcCCeEEeCcEEcCCCEECCCcEECCc
Confidence 3455566 66777777777777777777777776543
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=5e-09 Score=97.65 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=18.6
Q ss_pred ceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEEc
Q 010874 406 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELK 438 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i~ 438 (498)
++.||++|+|+ ++.|. +.+||++|.|+++|.|.
T Consensus 30 ~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~ 67 (194)
T 3tv0_A 30 DVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALII 67 (194)
T ss_dssp SEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEE
T ss_pred CCEECCCCEECCCCEEccCCCCeEECCCccccCCcccc
Confidence 45555555555 45542 24566666666666664
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-08 Score=95.56 Aligned_cols=47 Identities=9% Similarity=0.035 Sum_probs=28.5
Q ss_pred ccCCCeEec-Ceeee-ceEEcCCCEEC-ceEE----eccEECCCCEECCCCEEc
Q 010874 392 RFLPPTKID-NCRIK-DAIISHGCFLR-ECTV----EHSIVGERSRLDYGVELK 438 (498)
Q Consensus 392 ~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v----~~siIg~~~~Ig~~~~i~ 438 (498)
.+++++.|. +|.|. ++.||++|.|+ ++.| .+++||++|.|+++|.|.
T Consensus 54 ~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~ 107 (205)
T 3vbi_A 54 SIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVY 107 (205)
T ss_dssp EECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEE
T ss_pred EECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEE
Confidence 334444442 34443 56777777777 6666 237777777777777773
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-08 Score=97.68 Aligned_cols=104 Identities=13% Similarity=0.265 Sum_probs=70.1
Q ss_pred HHHHHhhccCCC--ccccCCCCCCCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEec-----cEECCCCEECCCCEE
Q 010874 366 EANMALTKESPA--FHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEH-----SIVGERSRLDYGVEL 437 (498)
Q Consensus 366 ~An~~ll~~~~~--~~~~~~~~~i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~-----siIg~~~~Ig~~~~i 437 (498)
++|+.|+.+.|. +.+++....+.+++.+.|+++|. .++.||++|+|+ +|.|.. .+||++|.|+++|.|
T Consensus 39 ~~~~~~~~~~p~~~~~~~~~~~~I~~~~~I~~~a~I~----g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I 114 (247)
T 1qre_A 39 VDEFSNIRENPVTPWNPEPSAPVIDPTAYIDPQASVI----GEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVL 114 (247)
T ss_dssp CCCCCSEECCCCBTTBSSCCCCEECTTCEECTTCEEE----ESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEE
T ss_pred hhhhhhccCCCCccccccCCCcEECCCcEECCCCEEe----CCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEE
Confidence 455555544433 44444555555556666655553 256777777777 666643 389999999999998
Q ss_pred cc------------------------eEEeCCccccchhHHHHhhcCCcccEEeCCCcEEee-eEECCCCEECCCcEEeC
Q 010874 438 KD------------------------TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 438 ~~------------------------svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~ 492 (498)
.. ++|+++ +.||++|.|.+ ++||+++.||++++|.+
T Consensus 115 ~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~-------------------v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~ 175 (247)
T 1qre_A 115 HALETINEEGEPIEDNIVEVDGKEYAVYIGNN-------------------VSLAHQSQVHGPAAVGDDTFIGMQAFVFK 175 (247)
T ss_dssp EECCSBCTTSCBCGGGCEEETTEEESEEECTT-------------------CEECTTCEEEEEEEECTTCEECTTCEEEE
T ss_pred EecccccccCcccccceeeccCccCceEECCC-------------------CEECCCCEEcCCcEECCCCEECCCCEEec
Confidence 64 344444 78888888877 88999999998888765
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.2e-09 Score=101.70 Aligned_cols=57 Identities=12% Similarity=0.257 Sum_probs=26.6
Q ss_pred cCCCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEE
Q 010874 381 YDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL 437 (498)
Q Consensus 381 ~~~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i 437 (498)
++|.+.+.+++.++++++|. .|.|. ++.||++|.|+ ++.|. ++.||++|.|+++|.|
T Consensus 25 I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I 85 (283)
T 4eqy_A 25 IHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASV 85 (283)
T ss_dssp BCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEE
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEE
Confidence 34444444444444444442 23332 45555555555 44443 4555555555555555
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-08 Score=100.12 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=35.9
Q ss_pred CCCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEE
Q 010874 382 DPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL 437 (498)
Q Consensus 382 ~~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i 437 (498)
+|.+.+.+++.+++++.|. .|.|. ++.||++|+|+ ++.|. ++.||++|.|+++|.|
T Consensus 5 ~p~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~I 64 (270)
T 1j2z_A 5 AKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL 64 (270)
T ss_dssp CTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEE
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEE
Confidence 3444455555555555553 35554 67777777777 66675 6777777777777777
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=9.4e-09 Score=106.18 Aligned_cols=100 Identities=20% Similarity=0.183 Sum_probs=63.4
Q ss_pred ccCCCeEe-cCeeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHH----------hh
Q 010874 392 RFLPPTKI-DNCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIAS----------LL 458 (498)
Q Consensus 392 ~i~~~~~i-~~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s----------~l 458 (498)
.|++++.| .++.|. +++||++|.|+ ++.|.+|+||+++.|++++.|.+++|+++..++..+.+.. .+
T Consensus 264 ~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~~i 343 (401)
T 2ggo_A 264 YIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNV 343 (401)
T ss_dssp EECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTTCEECTTCEECCSCTTCSCCEEEE
T ss_pred EECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCCcEECCCcEEcCcccCCCceeEEE
Confidence 34444444 235554 68888888888 7888888888888888888888888888877766654421 00
Q ss_pred cC-------CcccEEeCCCcEEe-eeEECCCCEECCCcEEe
Q 010874 459 AE-------GKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 459 ~~-------~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
++ .+.++.||++++|+ +|+|.++++||++++|.
T Consensus 344 ~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~ 384 (401)
T 2ggo_A 344 KGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIY 384 (401)
T ss_dssp TTEEEECSCSSCCCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CCceEEecccccCcEECCCeEECCCcEEcCCcEECCCcEEC
Confidence 00 01136777777775 55555555555555544
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=99.90 Aligned_cols=17 Identities=6% Similarity=0.218 Sum_probs=9.0
Q ss_pred ccEECCCCEECCCCEEc
Q 010874 422 HSIVGERSRLDYGVELK 438 (498)
Q Consensus 422 ~siIg~~~~Ig~~~~i~ 438 (498)
+++||++|.|+++|.|.
T Consensus 83 ~v~IG~~~~Ig~~~~I~ 99 (266)
T 3r0s_A 83 GVVIGKNATIREFATIN 99 (266)
T ss_dssp EEEECTTCEECTTCEEE
T ss_pred eEEECCCCEECCceEec
Confidence 45555555555555554
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.3e-08 Score=92.77 Aligned_cols=59 Identities=24% Similarity=0.307 Sum_probs=35.4
Q ss_pred cCCCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcc
Q 010874 381 YDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD 439 (498)
Q Consensus 381 ~~~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~ 439 (498)
++|.+.+...+.+++++.|. .+.|. ++.||++|.|+ ++.|. +++||++|.|++++.|.+
T Consensus 6 I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~ 68 (192)
T 3mqg_A 6 IHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYD 68 (192)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECT
T ss_pred ECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeC
Confidence 34444455555555555552 34443 57777777776 66665 377777777777777733
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-08 Score=101.05 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=47.0
Q ss_pred CCCCCccCCCeEec-Ceeee------ceEEcCCCEEC-ceEEec-cEECCCCEECCCCEEcc---------eEEeCCccc
Q 010874 387 FYTSPRFLPPTKID-NCRIK------DAIISHGCFLR-ECTVEH-SIVGERSRLDYGVELKD---------TVMLGADYY 448 (498)
Q Consensus 387 i~~~~~i~~~~~i~-~~~I~------~s~Ig~~~~I~-~~~v~~-siIg~~~~Ig~~~~i~~---------svi~~~~~~ 448 (498)
+.+.+.+.++++|. ++.|. ++.||+||.|+ +++|.+ ++||++|+|++++.|.+ ++|.++
T Consensus 107 I~p~a~I~~~~~Ig~g~~I~~~~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~--- 183 (276)
T 3gos_A 107 VVPPATVRKGAFIARNTVLMPSYVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDN--- 183 (276)
T ss_dssp ECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTT---
T ss_pred ECCCcEECCCCEECCCCEEcCCEEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCC---
Confidence 34444555555552 34443 35555555555 455543 56666666666655532 344443
Q ss_pred cchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 449 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 449 ~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||.+|.|. ++.||++|.||+|++|..
T Consensus 184 ----------------v~IG~~a~I~~gv~IG~~avIgagsvV~~ 212 (276)
T 3gos_A 184 ----------------CFVGARSEVVEGVIVEEGSVISMGVFIGQ 212 (276)
T ss_dssp ----------------CEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred ----------------CEECCCCEECCCCEECCCCEECCCCEECC
Confidence 5666666553 566666666666666654
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-08 Score=98.58 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=9.0
Q ss_pred ccEECCCCEECCCCEEc
Q 010874 422 HSIVGERSRLDYGVELK 438 (498)
Q Consensus 422 ~siIg~~~~Ig~~~~i~ 438 (498)
+++||++|.|+++|.|.
T Consensus 85 ~~~IG~~~~Ig~~~~I~ 101 (265)
T 4e6u_A 85 WLEIGNNNLIREHCSLH 101 (265)
T ss_dssp EEEECSSCEECTTCEEE
T ss_pred eEEECCCeEECCceEEC
Confidence 44555555555555554
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-08 Score=101.81 Aligned_cols=132 Identities=20% Similarity=0.301 Sum_probs=67.5
Q ss_pred EcceEeecCC--HHHHHHHHHHhhccC--CCccccC----------C--CCCCCCCCccCCCeEec-Ceeeec--eEEcC
Q 010874 351 FRDYWEDIGT--IKSFYEANMALTKES--PAFHFYD----------P--KTPFYTSPRFLPPTKID-NCRIKD--AIISH 411 (498)
Q Consensus 351 ~~~~w~dIgt--~~dy~~An~~ll~~~--~~~~~~~----------~--~~~i~~~~~i~~~~~i~-~~~I~~--s~Ig~ 411 (498)
...||.+.|. |++|......+..+. ..+.+++ + ...|.+++++.++++|+ ++.|.+ ++|+.
T Consensus 168 ~~~~Wt~~G~~~~~~f~~~~~~l~~~G~~~~~~~~dk~p~~~~~v~p~~gv~I~p~a~I~~~a~IG~gv~Ig~g~a~Ig~ 247 (387)
T 2rij_A 168 SNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTRILESSKVRMGASLAAGTTIMPGASYVNF 247 (387)
T ss_dssp CCEEEETTEEECHHHHHHHHHHHHHTTCCCCCCEEESSCBGGGTCCCCTTCEESCGGGBBTTCBCCTTCEECSSSCEECT
T ss_pred ceeeeccCcccCHHHHHHHHHHHHhcCCccceeecccccchhccccCCCCEEEcCCCEECCCeEEcCCCEEeCCeeEECC
Confidence 3468999999 899999998887422 1222221 1 12233333344444442 233332 44444
Q ss_pred CCE-ECceEEe-----ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEEC
Q 010874 412 GCF-LRECTVE-----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (498)
Q Consensus 412 ~~~-I~~~~v~-----~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig 485 (498)
+|. ||.|.|. +++||++|.|++++.|.+. +.+ .......++++ |.||.++. .++.||++|.||
T Consensus 248 nv~vIG~~~I~~~Ig~~vvIGdnv~Ig~ga~I~g~-l~g------~~~~~VvIGdn---v~IGagAv-~GV~IGdgavIG 316 (387)
T 2rij_A 248 NAGTTGACMVEGRISSSAIVGEGSDVGGGASILGV-LSG------TSGNAISVGKA---CLLGANSV-TGIPLGDNCIVD 316 (387)
T ss_dssp TCEESSCCEECSEECTTCEECTTCEECTTCEECCB-CSS------TTCCBCEECTT---CEECTTCE-ECSCBCTTCEEC
T ss_pred CcEEECCEEEeeEECCCCEECCCCEECCCceEcce-ecC------CCccCeEEeCC---CEECCCCc-CCcEECCCCEEC
Confidence 444 4443231 3455555555555543220 000 00000122223 67777777 778889999999
Q ss_pred CCcEEeCC
Q 010874 486 KDVVIVNK 493 (498)
Q Consensus 486 ~~~~i~~~ 493 (498)
+|++|...
T Consensus 317 AGsVVt~d 324 (387)
T 2rij_A 317 AGIAVLEG 324 (387)
T ss_dssp TTCEECTT
T ss_pred CCCEECCC
Confidence 88887653
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.3e-08 Score=92.71 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=44.4
Q ss_pred CCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEE----cceEEeCCccccchhHH
Q 010874 388 YTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL----KDTVMLGADYYQTESEI 454 (498)
Q Consensus 388 ~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i----~~svi~~~~~~~~~~~~ 454 (498)
..++.|.+++.|... .++.||++|.|+ +|.|. +++||++|.|+++|.| .+++|+++..++..+.+
T Consensus 36 g~~~~I~~~~~i~~~--~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I 106 (205)
T 3vbi_A 36 GKNVLISKKASIYNP--GVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIV 106 (205)
T ss_dssp CSSEEEBTTSEEESG--GGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEE
T ss_pred CCCCEECCCeEEccC--CeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEE
Confidence 334445555544321 157888888888 77775 7899999999999999 33777777666665544
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-08 Score=98.06 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=12.6
Q ss_pred cEECCCCEECCCCEE-cceEEeCC
Q 010874 423 SIVGERSRLDYGVEL-KDTVMLGA 445 (498)
Q Consensus 423 siIg~~~~Ig~~~~i-~~svi~~~ 445 (498)
++||++|.|+++|.| .++++.++
T Consensus 71 ~~Ig~~~~I~~~~~i~~~~~Ig~~ 94 (273)
T 3fs8_A 71 LIIGENALIRTENVIYGDTIIGDN 94 (273)
T ss_dssp EEECTTCEECTTCEEESSCEECTT
T ss_pred eEECCCCEECCCCEEeCCCEECCC
Confidence 566666666666655 34444444
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.4e-08 Score=97.74 Aligned_cols=67 Identities=22% Similarity=0.414 Sum_probs=38.0
Q ss_pred ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcc---------eEEeCCccccchhHHHHhhcCCcccEEeCCCcEE-
Q 010874 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD---------TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI- 473 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~---------svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i- 473 (498)
++.||+||.|+ +++|. +++||++|.|++++.|.+ ++|.++ |.||.+|.|
T Consensus 158 ~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~-------------------v~IG~~a~I~ 218 (304)
T 3eg4_A 158 GAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDN-------------------CFIGARSEVV 218 (304)
T ss_dssp TCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTT-------------------CEECTTCEEC
T ss_pred CCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCC-------------------CEECCCCEEc
Confidence 34555555555 34443 355555555555555554 444444 566666654
Q ss_pred eeeEECCCCEECCCcEEe
Q 010874 474 RNCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 474 ~~~iI~~~~~Ig~~~~i~ 491 (498)
.+++||++|.||++++|.
T Consensus 219 ~gv~IG~~avIgagsvV~ 236 (304)
T 3eg4_A 219 EGCIVREGSVLGMGVFIG 236 (304)
T ss_dssp TTCEECTTCEECTTCEEC
T ss_pred CCcEECCCcEECCCCEEc
Confidence 356677777777777665
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=98.70 E-value=4.6e-08 Score=96.34 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=10.8
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEE
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVI 490 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i 490 (498)
+.||++|.|+ +|+|.++++||++++|
T Consensus 178 v~IGd~v~IG~~a~I~~gv~IG~~avI 204 (276)
T 3gos_A 178 TIIEDNCFVGARSEVVEGVIVEEGSVI 204 (276)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEE
T ss_pred eEECCCCEECCCCEECCCCEECCCCEE
Confidence 3444444442 3444444444444444
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-08 Score=107.09 Aligned_cols=62 Identities=21% Similarity=0.309 Sum_probs=40.8
Q ss_pred ccCCCeEe-cCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhH
Q 010874 392 RFLPPTKI-DNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESE 453 (498)
Q Consensus 392 ~i~~~~~i-~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~ 453 (498)
.|++++.| .++.|.+++||++|.|+ ++.|.+++||++|.|++++.|. ++++.++..++++++
T Consensus 285 ~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~ 349 (456)
T 2v0h_A 285 KLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVE 349 (456)
T ss_dssp EECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEE
T ss_pred EECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCE
Confidence 34444444 24666678888888888 7777778888888888877776 555555544444443
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=5.7e-08 Score=91.75 Aligned_cols=82 Identities=15% Similarity=0.232 Sum_probs=62.1
Q ss_pred ccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-----ccEECCCCEECCCCEEcc---------------eEEeCCccc
Q 010874 392 RFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKD---------------TVMLGADYY 448 (498)
Q Consensus 392 ~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-----~siIg~~~~Ig~~~~i~~---------------svi~~~~~~ 448 (498)
.+.+++.|. .+.|. ++.||++|.|+ ++.|. +++||++|.|+++|.|.. ++|+++
T Consensus 41 ~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~--- 117 (213)
T 3kwd_A 41 EIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDN--- 117 (213)
T ss_dssp EECTTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTT---
T ss_pred cCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCC---
Confidence 344445552 24442 67889999998 78884 479999999999999974 455555
Q ss_pred cchhHHHHhhcCCcccEEeCCCcEEee-eEECCCCEECCCcEEeC
Q 010874 449 QTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 449 ~~~~~~~s~l~~~~~~v~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~ 492 (498)
+.|++++.|.. ++||+++.||++++|.+
T Consensus 118 ----------------v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~ 146 (213)
T 3kwd_A 118 ----------------VSITHMALIHGPAYIGDGCFIGFRSTVFN 146 (213)
T ss_dssp ----------------CEECTTCEEEEEEEECTTCEECTTCEEEE
T ss_pred ----------------cEECCCcEEcCCCEECCCCEECCCCEEeC
Confidence 78888888876 89999999999988764
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-07 Score=95.11 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=87.2
Q ss_pred HhhcCceEEEEEc--ceEeecCCHHHHHHHHHHhhccC----CC--ccccCC----------------CCCCCCCCccCC
Q 010874 340 AIMEHDVQAYIFR--DYWEDIGTIKSFYEANMALTKES----PA--FHFYDP----------------KTPFYTSPRFLP 395 (498)
Q Consensus 340 ~i~~~~I~~~~~~--~~w~dIgt~~dy~~An~~ll~~~----~~--~~~~~~----------------~~~i~~~~~i~~ 395 (498)
+++.+++.+.... |.|..-.-++........+.... .. ..+++. ...+.+.+.+.+
T Consensus 61 ~l~~g~~r~a~~~~~g~w~~~~w~kk~ill~f~l~~~~~~~~g~~~~~~~dk~p~kf~~~~~~~~~~~g~~I~p~a~I~~ 140 (304)
T 3eg4_A 61 LLDRGEVRVAEKQADGNWHVNQWLKKAVLLSFRLNPMEVIKGGPGQSSWWDKVPSKFDGWTANEFEKAGFRAVPNCIVRH 140 (304)
T ss_dssp HHHTTSSCSEEECTTSCEEECHHHHHHHHHHHHHSCCEEEECSGGGCEEEESCCBTTTTCCHHHHHHHCCEECTTCEEBT
T ss_pred HhcCCCeEEEEEcCCCceEEeeeeeeeeeeeeeeccccccccCcccchheecccchhcccChhHhccCCcEEcCCEEECC
Confidence 5567777776664 67877666665555554443321 10 122221 122334444455
Q ss_pred CeEec-CeeeeceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcE
Q 010874 396 PTKID-NCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK 472 (498)
Q Consensus 396 ~~~i~-~~~I~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~ 472 (498)
+++|+ ++.|.+++|+.+|.|| +|.|. +++||++|.||++|.|.......+.. ++ -..-|+.||++|.
T Consensus 141 ~v~Ig~g~~I~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~-~~---------~~~~~v~IGd~v~ 210 (304)
T 3eg4_A 141 SAYIAPNAILMPSFVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVL-EP---------MQAGPTIIEDNCF 210 (304)
T ss_dssp TCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCC-SS---------TTCCCCEECTTCE
T ss_pred CcEECCCCEEeCCEECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCcc-cc---------CccCCeEEcCCCE
Confidence 55552 4556556777777777 67775 47777778888887776554444310 00 0012388999999
Q ss_pred Ee-eeEECCCCEECCCcEEeCCC
Q 010874 473 IR-NCIIDKNVKIGKDVVIVNKD 494 (498)
Q Consensus 473 i~-~~iI~~~~~Ig~~~~i~~~~ 494 (498)
|+ +|+|.++++||++++|...-
T Consensus 211 IG~~a~I~~gv~IG~~avIgags 233 (304)
T 3eg4_A 211 IGARSEVVEGCIVREGSVLGMGV 233 (304)
T ss_dssp ECTTCEECTTCEECTTCEECTTC
T ss_pred ECCCCEEcCCcEECCCcEECCCC
Confidence 95 78888999999999887643
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.8e-08 Score=103.71 Aligned_cols=94 Identities=22% Similarity=0.300 Sum_probs=78.3
Q ss_pred CCCCCCCCccCCCeEec-----------CeeeeceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccc
Q 010874 384 KTPFYTSPRFLPPTKID-----------NCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQT 450 (498)
Q Consensus 384 ~~~i~~~~~i~~~~~i~-----------~~~I~~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~ 450 (498)
...+..++.|.+++.|. ++.|.+++||++|.|+ ++.|. +++||++|.||++|.|.+++|.++
T Consensus 292 ~~~ig~~~~I~~~~~i~~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~Ig~~----- 366 (468)
T 1hm9_A 292 QTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGEN----- 366 (468)
T ss_dssp SCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESCEECTT-----
T ss_pred CCEECCCCEECCCCEEeccEEeCCcEEEEEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeeeEEcCC-----
Confidence 34455555555555443 3445678999999999 88887 899999999999999999999888
Q ss_pred hhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCCCCC
Q 010874 451 ESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDES 496 (498)
Q Consensus 451 ~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v 496 (498)
+.|++.+.+.+++||+++.||+++++.+.+++
T Consensus 367 --------------~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~ 398 (468)
T 1hm9_A 367 --------------TKAGHLTYIGNCEVGSNVNFGAGTITVNYDGK 398 (468)
T ss_dssp --------------CEEEEEEEEESEEECTTCEECTTCEEECBCSS
T ss_pred --------------cEeCCceEEccccccCCcEECCCcEEecCcCc
Confidence 89999999999999999999999999997764
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.67 E-value=8.6e-08 Score=95.76 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=54.2
Q ss_pred ccCCCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEc-----ceEEeCCccccc
Q 010874 380 FYDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK-----DTVMLGADYYQT 450 (498)
Q Consensus 380 ~~~~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~-----~svi~~~~~~~~ 450 (498)
+++|.+.+.+++.++++++|. .|.|. ++.||++|+|+ ++.|. ++.||++|.|++++.|. .++|+++..+..
T Consensus 9 ~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~ 88 (305)
T 3t57_A 9 LIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGH 88 (305)
T ss_dssp CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECT
T ss_pred eECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECC
Confidence 345666666666677777764 46665 78888888888 78886 88999999999999987 477777755555
Q ss_pred hhHH
Q 010874 451 ESEI 454 (498)
Q Consensus 451 ~~~~ 454 (498)
++.+
T Consensus 89 ~a~I 92 (305)
T 3t57_A 89 HAVV 92 (305)
T ss_dssp TCEE
T ss_pred ccEe
Confidence 5433
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.2e-08 Score=99.49 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=55.9
Q ss_pred CCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-----ccEECCCCEECCCCEEcc---------eEEeCCcccc
Q 010874 387 FYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKD---------TVMLGADYYQ 449 (498)
Q Consensus 387 i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-----~siIg~~~~Ig~~~~i~~---------svi~~~~~~~ 449 (498)
|++.+++.++++|+ ++.|. .++|+.+|.|+ +|.|. .++||++|.|+++|.|.. .+|.++
T Consensus 187 I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~igv~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdn---- 262 (347)
T 3r5d_A 187 IADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSGGGNIVISVGEG---- 262 (347)
T ss_dssp ESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTTCEECTTEEECTTCEECC------CCCCEECTT----
T ss_pred ECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEeEEECCCCEECCCCEEccccCCCCccceEECCC----
Confidence 34444444444442 33333 23444444444 33331 478999999999998876 455555
Q ss_pred chhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 010874 450 TESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 450 ~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~ 493 (498)
|.||.|+.| ++.||++|.||+|++|...
T Consensus 263 ---------------v~IGAnAtI-GVtIGd~~iIGAGSVVtkd 290 (347)
T 3r5d_A 263 ---------------CLIGANAGI-GIPLGDRNIVEAGLYITAG 290 (347)
T ss_dssp ---------------CEECTTCEE-CSCBCTTCEECTTCEECTT
T ss_pred ---------------CEECCCCEE-eeEECCCCEECCCCEECCC
Confidence 899999999 8888888888888888654
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.6e-08 Score=96.60 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=23.0
Q ss_pred eEEcCCCEEC-ceEE-eccEECCCCEECCCCEEc-ceEEeCC
Q 010874 407 AIISHGCFLR-ECTV-EHSIVGERSRLDYGVELK-DTVMLGA 445 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i~-~svi~~~ 445 (498)
++||++|.|+ ++.| .+++||+++.||+++.|. ++.|.++
T Consensus 71 ~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~I~~~~~Ig~~ 112 (273)
T 3fs8_A 71 LIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNN 112 (273)
T ss_dssp EEECTTCEECTTCEEESSCEECTTCEECSSCEECSSCEECSS
T ss_pred eEECCCCEECCCCEEeCCCEECCCCEECCceEECCCCEECCC
Confidence 4555555555 4555 356666666666666664 5555555
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.2e-08 Score=94.64 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=52.6
Q ss_pred ceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEEcce---EEeCCccccchhHH-HHhhcCCcccEEeCCCcEEe-e
Q 010874 406 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDT---VMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKIR-N 475 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i~~s---vi~~~~~~~~~~~~-~s~l~~~~~~v~Ig~~~~i~-~ 475 (498)
+++||++|.|+ ++.|. +++||++|.||++|.|.++ .+++.......... ...++++ |.||.+|.|. +
T Consensus 105 ~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~---v~IG~~a~I~~g 181 (252)
T 3jqy_B 105 KVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSY---VWVGRNVSIMKG 181 (252)
T ss_dssp EEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSS---CEECSSEEECTT
T ss_pred EEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCeEEecC---cEECCCCEECCC
Confidence 67889999998 78887 8999999999999999876 11100000000000 0011112 6677776554 6
Q ss_pred eEECCCCEECCCcEEeC
Q 010874 476 CIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~ 492 (498)
+.||+++.||++++|..
T Consensus 182 v~IG~~~~IgagsvV~~ 198 (252)
T 3jqy_B 182 VSVGSGSVIGYGSIVTK 198 (252)
T ss_dssp CEECTTCEECTTCEECS
T ss_pred CEECCCCEECCCCEECc
Confidence 77888888888887753
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.65 E-value=7.6e-08 Score=96.43 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=26.8
Q ss_pred CCCCCCCccCCCeEecCeeee-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcc
Q 010874 385 TPFYTSPRFLPPTKIDNCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD 439 (498)
Q Consensus 385 ~~i~~~~~i~~~~~i~~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~ 439 (498)
..+..++.|++++.|....|. ++.||++|.|+ +++|. ++.||++|+|++++.|.+
T Consensus 152 a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~ 209 (316)
T 3tk8_A 152 AIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGG 209 (316)
T ss_dssp CEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECC
T ss_pred eEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECC
Confidence 334444445555544332222 44555555555 45552 455555555555555544
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-07 Score=92.93 Aligned_cols=52 Identities=15% Similarity=0.251 Sum_probs=31.9
Q ss_pred CCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEc
Q 010874 387 FYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK 438 (498)
Q Consensus 387 i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~ 438 (498)
+.+++.+++++.|. .|.|. ++.||++|+|+ ++.|. ++.||++|.|+++|.|.
T Consensus 14 I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~ 69 (262)
T 2qia_A 14 VEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIG 69 (262)
T ss_dssp ECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEE
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEEC
Confidence 33333344444442 24443 57777777776 66665 67888888888888775
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=6.8e-08 Score=95.35 Aligned_cols=52 Identities=12% Similarity=0.197 Sum_probs=41.2
Q ss_pred ccEECCCCEECCCCEEcc---------eEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 422 HSIVGERSRLDYGVELKD---------TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 422 ~siIg~~~~Ig~~~~i~~---------svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
+++||++|.|+++|.|.. .+|.++ |.||.|+.| ++.||++|.||+|++|..
T Consensus 207 Gv~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDn-------------------v~IGanAtI-gVtIGd~~iIGAGSVVtk 266 (332)
T 3fsy_A 207 GVVVGDGSDVGGGASIMGTLSGGGTHVISIGKR-------------------CLLGANSGL-GISLGDDCVVEAGLYVTA 266 (332)
T ss_dssp TCEECTTCEECTTCEECSBCC---CCBCEECTT-------------------CEECTTCEE-CSCBCSSCEECTTCEECT
T ss_pred ceEECCCCEECCCCEEcCCCCCCCccceEECCC-------------------CEECCCCEE-eeEECCCCEECCCCEECC
Confidence 367888888888888865 444444 899999999 888888888888888865
Q ss_pred C
Q 010874 493 K 493 (498)
Q Consensus 493 ~ 493 (498)
.
T Consensus 267 d 267 (332)
T 3fsy_A 267 G 267 (332)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-07 Score=91.68 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=18.3
Q ss_pred ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEE
Q 010874 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL 437 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i 437 (498)
++.||++|+|+ ++.|. ++.||++|.|+++|.|
T Consensus 30 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I 63 (259)
T 3hsq_A 30 NVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVI 63 (259)
T ss_dssp SCEECTTCEECTTCEECTTEEECSSCEECTTCEE
T ss_pred CCEECCCCEEcCCcEEcCCcEECCCcEECCCCEE
Confidence 45555555555 45554 3566666666666665
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.3e-08 Score=95.21 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=23.6
Q ss_pred ceEEcCCCEEC-ceEE-------------eccEECCCCEECCCCEEcc
Q 010874 406 DAIISHGCFLR-ECTV-------------EHSIVGERSRLDYGVELKD 439 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v-------------~~siIg~~~~Ig~~~~i~~ 439 (498)
++.||++|.|+ ++.| .+++||++|.|+++|.|..
T Consensus 70 ~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~ 117 (283)
T 4eqy_A 70 HTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTIHT 117 (283)
T ss_dssp EEEECSSCEECTTEEEEECCCCTTCCCCCCEEEECSSCEECTTEEEEC
T ss_pred CcEECCCcEEcCCcEECCCCccccccCCCceEEECCCcccCcceeEcc
Confidence 56777777777 6666 3567777777777777764
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.9e-08 Score=103.25 Aligned_cols=89 Identities=20% Similarity=0.265 Sum_probs=62.0
Q ss_pred CccCCCeEec-Ceee-eceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHH--HHhhcCCcccE
Q 010874 391 PRFLPPTKID-NCRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPI 465 (498)
Q Consensus 391 ~~i~~~~~i~-~~~I-~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~--~s~l~~~~~~v 465 (498)
+.+++.+.|. +|.| .++.||++|.|+ ++.|.+++||++|.|+++|.|.+++|.++..+++.+.+ .+.++++ +
T Consensus 269 ~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~---~ 345 (459)
T 4fce_A 269 LTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEG---A 345 (459)
T ss_dssp EEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTT---C
T ss_pred EEECCCcEECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCC---c
Confidence 3455566663 4666 479999999999 89999999999999999999999888888555554433 2333444 4
Q ss_pred EeCCCcEEeeeEECCCC
Q 010874 466 GVGRNTKIRNCIIDKNV 482 (498)
Q Consensus 466 ~Ig~~~~i~~~iI~~~~ 482 (498)
.||+++.|++++|++++
T Consensus 346 ~Ig~~~~i~~~~i~~~~ 362 (459)
T 4fce_A 346 HVGNFVEIKKARLGKGS 362 (459)
T ss_dssp EEEEEEEEEEEEECTTC
T ss_pred EECCCeEEeeeEEcCCC
Confidence 55555555555555555
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-07 Score=101.26 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=43.2
Q ss_pred eeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEEC
Q 010874 402 CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIID 479 (498)
Q Consensus 402 ~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~ 479 (498)
+.|++|+||+||.|+ .+.|.+|+||.+|.||+|+.+.+- + ...-..++++++ |.||.++.|. .+.||
T Consensus 365 v~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~---d-----g~~~~~t~IGd~---~~iG~~~~l~~~v~Ig 433 (501)
T 3st8_A 365 VEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNY---D-----GTSKRRTTVGSH---VRTGSDTMFVAPVTIG 433 (501)
T ss_dssp EEEESCEECTTCEEEESCEEESEEECSSCEECTTCEEECB---C-----SSSBCCEEECTT---CEECTTCEEESSEEEC
T ss_pred EEEccceecCCcEEeccceecCceEcCCCEECCCEEEEcc---c-----CCcccCCEECCC---cEECCCCEEcCCcEEC
Confidence 344455555555555 445555555555555555554320 0 000001222223 6777776654 68889
Q ss_pred CCCEECCCcEEeC
Q 010874 480 KNVKIGKDVVIVN 492 (498)
Q Consensus 480 ~~~~Ig~~~~i~~ 492 (498)
++|.||+|++|..
T Consensus 434 ~~~~i~ags~v~~ 446 (501)
T 3st8_A 434 DGAYTGAGTVVRE 446 (501)
T ss_dssp TTCEECTTCEECS
T ss_pred CCCEECCCCEECc
Confidence 9999999888854
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-07 Score=86.78 Aligned_cols=92 Identities=16% Similarity=0.241 Sum_probs=53.6
Q ss_pred CCccCCCeEecCeeeeceEEcCCCEEC-ceEEe---ccEECCCCEECCCCEEcceEEeCCccccchhHHH--------Hh
Q 010874 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVMLGADYYQTESEIA--------SL 457 (498)
Q Consensus 390 ~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~---~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~--------s~ 457 (498)
++.+.+|+++.-. .++.||++|+|+ +|.|. ...||++|.|+++|.|.++....+ ..... ..
T Consensus 64 ~~~I~~~~~~~~g--~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~-----~~~~~~~~~~~~~v~ 136 (190)
T 3hjj_A 64 KAQINPDFRCDYG--YNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLH-----PVERNSGKEYGKPVK 136 (190)
T ss_dssp CCEECSSCEESSS--TTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSS-----HHHHTSSEEEECCEE
T ss_pred CcEECCCEEEEeC--CceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCc-----hhhccccccccCCeE
Confidence 5566666665200 157777777777 67664 568999999999999965422111 11110 01
Q ss_pred hcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEe
Q 010874 458 LAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 458 l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
++++ |.||.+|+|. ++.||+++.||+++++.
T Consensus 137 IG~~---v~IG~~~~I~~gv~IG~~~vIgagsvV~ 168 (190)
T 3hjj_A 137 IGNN---VWVGGGAIINPGVSIGDNAVIASGAVVT 168 (190)
T ss_dssp ECTT---CEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred ECCC---CEECCCCEECCCCEECCCCEECCCCEEC
Confidence 1122 4444444443 56677777777777665
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.1e-07 Score=86.86 Aligned_cols=51 Identities=10% Similarity=0.169 Sum_probs=35.9
Q ss_pred CCCCCccCCCeEecCeeee-ceEEcCCCEEC-ceEEe---ccEECCCCEECCCCEEcce
Q 010874 387 FYTSPRFLPPTKIDNCRIK-DAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDT 440 (498)
Q Consensus 387 i~~~~~i~~~~~i~~~~I~-~s~Ig~~~~I~-~~~v~---~siIg~~~~Ig~~~~i~~s 440 (498)
+..++.+.+|... .+. ++.||++|+|+ +|+|. ..+||++|.||++|.|..+
T Consensus 59 ig~~~~I~~p~~~---~ig~~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~ 114 (195)
T 3nz2_A 59 LGHKSCVQPPFHC---EFGKTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTA 114 (195)
T ss_dssp ECTTCEECSSEEE---SCSTTEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECE
T ss_pred cCCCcEEcCCeEE---EeCCCeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecC
Confidence 3445566666443 222 67888888888 77774 3489999999999998765
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=98.59 E-value=9.9e-08 Score=93.39 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=45.4
Q ss_pred CCCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEE--------------cceEEe
Q 010874 382 DPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL--------------KDTVML 443 (498)
Q Consensus 382 ~~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i--------------~~svi~ 443 (498)
+|.+.+.+++.++++++|. .|.|. ++.||++|+|+ ++.|. ++.||++|+|++++.| ...+|+
T Consensus 8 ~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG 87 (266)
T 3r0s_A 8 HPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIG 87 (266)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEEC
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEEC
Confidence 3334444444444444442 24443 67777888887 67776 6888888888888888 466666
Q ss_pred CCccccchhHH
Q 010874 444 GADYYQTESEI 454 (498)
Q Consensus 444 ~~~~~~~~~~~ 454 (498)
++..+++.+.+
T Consensus 88 ~~~~Ig~~~~I 98 (266)
T 3r0s_A 88 KNATIREFATI 98 (266)
T ss_dssp TTCEECTTCEE
T ss_pred CCCEECCceEe
Confidence 66665555444
|
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-06 Score=91.42 Aligned_cols=351 Identities=14% Similarity=0.153 Sum_probs=182.2
Q ss_pred CCCCceEEEEEeCCCCCcccCCccCCCccceecC-CcchhHHHHHHHHHhc----CC-CeEEEEeccC-chhHHHHHHhh
Q 010874 90 VDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINS----GI-NKIFVLTQFN-SASLNRHIART 162 (498)
Q Consensus 90 ~~~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~-G~~pLId~~L~~l~~s----Gi-~~I~Vv~~~~-~~~l~~hl~~~ 162 (498)
....++.+|+||||.||||. ...||.++||. |+ +++++.++++... |. =..+|.+++. .+...+++.+.
T Consensus 123 ~~l~kvavvlLaGGlGTRLG---~~~PK~~i~V~sgk-tflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~ 198 (528)
T 3r3i_A 123 SVLNKLVVVKLNGGLGTSMG---CKGPKSLIGVRNEN-TFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKY 198 (528)
T ss_dssp TTCTTEEEEEECCCBCTTTT---CSSBGGGSEEETTE-EHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGG
T ss_pred hhcCceEEEEeCCCCccccC---CCCCccceecCCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhc
Confidence 34688999999999999996 47899999997 78 9999999998764 42 2456777654 55666666431
Q ss_pred -ccCCCCc-CCCCeEEEecc-cCCCC--------CCCCcc-ccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceee-e
Q 010874 163 -YFGNGTN-FGDGFVEVLAA-TQTPG--------ESGKNW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLY-R 227 (498)
Q Consensus 163 -~~~~~~~-~~~~~V~v~~~-~q~~~--------~~~~~~-~~Gta~Alr~~~--~~i~~~~~~~~e~~Lvl~GD~l~-~ 227 (498)
||+.... |..+.+-.+.. ..-.- .....| +.|.|+..+... ..+++......+++.+.+.|.+. .
T Consensus 199 ~~fg~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~ 278 (528)
T 3r3i_A 199 NHCRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGAT 278 (528)
T ss_dssp TTSSCCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCC
T ss_pred CccCCCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccc
Confidence 1321100 11111101100 00000 000112 357766554432 34555545677999999999964 4
Q ss_pred cCHHHHHHHHHHc----CCCeEEEEEecCCCCCCCceEEEECCCCC--EEEEEeCCCccccccccccccccCCCcccccc
Q 010874 228 MDYMDFIQSHVDR----DADITISCAAVGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQEARK 301 (498)
Q Consensus 228 ~dl~~ll~~h~~~----~ad~tv~~~~~~~~~~~~~g~v~~d~~gr--V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~ 301 (498)
.|. .++..+.++ ++++.+-+.+...+. ..-|++.. .+|+ ++.+.|-|...... .++. .
T Consensus 279 vDp-~~Lg~~~~~~~~~~~d~~~kVv~Kt~~d-ek~Gvl~~-~dGk~~vvEyseip~e~~~~----~~g~---------~ 342 (528)
T 3r3i_A 279 VDL-YILNHLMNPPNGKRCEFVMEVTNKTRAD-VKGGTLTQ-YEGKLRLVEIAQVPKAHVDE----FKSV---------S 342 (528)
T ss_dssp CCH-HHHHHHSSCSSSCCCSEEEEECCCCTTC-CSSCEEEC-SSSSCEEECTTSSCGGGTTT----SSCS---------S
T ss_pred cCH-HHHHHHHhcccccCCcEEEEEeEccccC-CcccEEEE-ECCeEEEEEecCCChhHhhc----cCCc---------c
Confidence 453 356666666 788777665433221 22455443 2454 44444433322110 0111 1
Q ss_pred CCcceeeeEEEEcHHHHHHHHHhhCCCC------------------CchhhhhHHHHhhcCceEEEEEc-ceEeecCCHH
Q 010874 302 CPYVASMGVYVFKKDVLFKLLRWRYPTS------------------NDFGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIK 362 (498)
Q Consensus 302 ~~~l~~~GIYif~~~vL~~ll~~~~~~~------------------~df~~dii~~~i~~~~I~~~~~~-~~w~dIgt~~ 362 (498)
...+.|+...+|+-+.|.++++...... +-+..++++.. .+..++.+. ..+..+.+..
T Consensus 343 ~f~~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd~~~~viqlEt~igd~i~~f---~~~~~i~VpR~rF~PvKn~s 419 (528)
T 3r3i_A 343 KFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSF---ENSLGINVPRSRFLPVKTTS 419 (528)
T ss_dssp SCCCCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCSSSSCEEEEEBCSTTCSTTS---SSCCCEECCGGGCCBCCSHH
T ss_pred cCCeEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccCCCCCEEEeHHHHHHHHHhc---cCcEEEEEehHHcccccchH
Confidence 2356899999999999998887531110 00111222111 122333333 2377889999
Q ss_pred HHHHHHHHhhccCCCccc-cCCCCCCCCCCccCCCeEecC--eeeec--eEEcCCCEECceEEeccEECCCCEECCCCEE
Q 010874 363 SFYEANMALTKESPAFHF-YDPKTPFYTSPRFLPPTKIDN--CRIKD--AIISHGCFLRECTVEHSIVGERSRLDYGVEL 437 (498)
Q Consensus 363 dy~~An~~ll~~~~~~~~-~~~~~~i~~~~~i~~~~~i~~--~~I~~--s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i 437 (498)
|++....++..-... .+ ..+.....+. |-..++. .+|.+ .-+..--.|- ...+=.|--++.-|.++++
T Consensus 420 dLll~~Sdly~l~~g-~l~~~~~r~~~~~----P~v~L~~~~~~v~~f~~rf~~iP~l~--~~~~LtV~Gdv~fg~~v~l 492 (528)
T 3r3i_A 420 DLLLVMSNLYSLNAG-SLTMSEKREFPTV----PLVKLGSSFTKVQDYLRRFESIPDML--ELDHLTVSGDVTFGKNVSL 492 (528)
T ss_dssp HHHHHHSTTSEEETT-EEECCSSCSSCCC----CEEEECTTSCSHHHHHHHCSSCCEEE--EEEEEEEESEEECCTTCEE
T ss_pred HHHHHhcceeEeeCC-eEEecccccCCCC----CEEEeCcccCcHHHHHHhCCCCCCcc--cCCEEEEecceEECCCcEE
Confidence 988777655432111 11 1111111111 1112221 11110 1111101110 1123455666888888888
Q ss_pred cceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEE
Q 010874 438 KDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 484 (498)
Q Consensus 438 ~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~I 484 (498)
+++++..+ +...++.|.+|+++.|.+|-.|.+|
T Consensus 493 ~G~v~i~~--------------~~g~~~~ip~g~~len~~v~g~~~~ 525 (528)
T 3r3i_A 493 KGTVIIIA--------------NHGDRIDIPPGAVLENKIVSGNLRI 525 (528)
T ss_dssp EEEEEEEC--------------CTTCEEECCTTCEEEEEEEC-----
T ss_pred EEEEEEEc--------------CCCCceecCCCCEEeccEEeccccc
Confidence 88888743 1223488999999999998877766
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.9e-07 Score=87.44 Aligned_cols=51 Identities=8% Similarity=0.152 Sum_probs=35.7
Q ss_pred CCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEec---cEECCCCEECCCCEEcce
Q 010874 388 YTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEH---SIVGERSRLDYGVELKDT 440 (498)
Q Consensus 388 ~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~---siIg~~~~Ig~~~~i~~s 440 (498)
..++.+.+|.++.-. .++.||++|+|+ +|+|.+ .+||++|.||++|.|..+
T Consensus 58 g~~~~i~~~~~~~~g--~~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~ 112 (199)
T 3ftt_A 58 TDNVSISIPFDTDYG--WNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTA 112 (199)
T ss_dssp CSSEEECSSEEESSS--TTEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECE
T ss_pred CCCeEEeCCEEEEec--CCcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecC
Confidence 445566677665210 167778888887 777743 599999999999999554
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.58 E-value=9.2e-08 Score=98.18 Aligned_cols=12 Identities=8% Similarity=0.108 Sum_probs=7.4
Q ss_pred eeeEEEEcHHHH
Q 010874 307 SMGVYVFKKDVL 318 (498)
Q Consensus 307 ~~GIYif~~~vL 318 (498)
.+|..+++++.+
T Consensus 77 ~a~~~i~~~~~~ 88 (372)
T 3pmo_A 77 RAGAVLLTAADA 88 (372)
T ss_dssp CCSEEEECHHHH
T ss_pred CCcEEEEcHHHH
Confidence 356677776644
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-07 Score=87.03 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=46.6
Q ss_pred ceEEcCCCEEC-ceEEe-----------------ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEe
Q 010874 406 DAIISHGCFLR-ECTVE-----------------HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 467 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-----------------~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~I 467 (498)
++.||++|.|+ ++.|. .++||+++.|+.++.+.++.+.++ +.|
T Consensus 51 ~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~-------------------~~I 111 (194)
T 3tv0_A 51 PIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNVFEVGCYSQAMKMGDN-------------------NVI 111 (194)
T ss_dssp CEEECTTCEECTTCEEEECCCSCC---------CCEEECSSCEECTTCEECCSEECSS-------------------CEE
T ss_pred CeEECCCccccCCcccccccccccccccccCcCCceEECCcceEecceeEeeeeeccc-------------------cee
Confidence 36788888888 67763 358999999999999988888777 555
Q ss_pred CCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 468 GRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 468 g~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
|.+++|. ++.||++|.||++++|..
T Consensus 112 g~~~~I~~gv~IG~~~~IgagsvV~~ 137 (194)
T 3tv0_A 112 ESKAYVGRNVILTSGCIIGACCNLNT 137 (194)
T ss_dssp CTTCEECTTEEECSSCEECTTCEECC
T ss_pred cceeeECCeEEECCCCEECCCCEECC
Confidence 5555553 455555555555555543
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-07 Score=86.66 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=36.0
Q ss_pred CCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEec---cEECCCCEECCCCEEcc
Q 010874 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEH---SIVGERSRLDYGVELKD 439 (498)
Q Consensus 387 i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~---siIg~~~~Ig~~~~i~~ 439 (498)
+..++.+.++..+.-. .++.||++|+|+ +|.|.+ ..||++|.||++|.|..
T Consensus 59 ig~~~~I~~~~~~~~g--~~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~ 113 (188)
T 3srt_A 59 VGKQINVEQNIRCDYG--YNIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYT 113 (188)
T ss_dssp CCSCEEECSCEEESSS--TTEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEEC
T ss_pred cCCCCEEcCCEEEEeC--CCeEECCcccccCceEEecCCceEECCeeEECCCcEEee
Confidence 4455666777665311 267788888888 777753 38999999999999943
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-07 Score=97.25 Aligned_cols=32 Identities=19% Similarity=0.431 Sum_probs=18.3
Q ss_pred ceEEcCCCEEC-ceEE-eccEECCCCEECCCCEE
Q 010874 406 DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVEL 437 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i 437 (498)
++.||++|+|+ +++| .+++||++|.|++++.|
T Consensus 150 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I 183 (357)
T 4e79_A 150 NVEVGKDCFIDSYVTITGSSKLRDRVRIHSSTVI 183 (357)
T ss_dssp TCEECSSCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred CCEECCCCEECCCcEEecccEEEeEeeccCCeEE
Confidence 45555555555 4555 35666666666666665
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-07 Score=92.46 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=41.7
Q ss_pred CCCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEE-------------cceEEeC
Q 010874 382 DPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL-------------KDTVMLG 444 (498)
Q Consensus 382 ~~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i-------------~~svi~~ 444 (498)
+|.+.+.+++.+++++.|. .+.|. ++.||++|+|+ ++.|. ++.||++|+|+++|.| .+.+|++
T Consensus 11 ~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~ 90 (265)
T 4e6u_A 11 HSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGN 90 (265)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECS
T ss_pred CCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECC
Confidence 3444444444444444442 24443 56777777777 66665 5777888888777777 3455555
Q ss_pred CccccchhH
Q 010874 445 ADYYQTESE 453 (498)
Q Consensus 445 ~~~~~~~~~ 453 (498)
+..+...+.
T Consensus 91 ~~~Ig~~~~ 99 (265)
T 4e6u_A 91 NNLIREHCS 99 (265)
T ss_dssp SCEECTTCE
T ss_pred CeEECCceE
Confidence 555444433
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.1e-07 Score=94.43 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=18.9
Q ss_pred ceEEcCCCEEC-ceEE-eccEECCCCEECCCCEE
Q 010874 406 DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVEL 437 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i 437 (498)
++.||++|.|+ +++| .+++||++|.|++++.|
T Consensus 145 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I 178 (341)
T 3eh0_A 145 NSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVV 178 (341)
T ss_dssp TCEECTTCEECSSCEECTTCEECSSCEECTTCEE
T ss_pred CCEECCCcEECCCcEECCCCEECCccEEcCCcEE
Confidence 45555555555 4555 45666666666666666
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.5e-07 Score=98.75 Aligned_cols=99 Identities=11% Similarity=0.139 Sum_probs=64.0
Q ss_pred CCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCC-------------------CEECCCCEEcceEEeCCcccc
Q 010874 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGER-------------------SRLDYGVELKDTVMLGADYYQ 449 (498)
Q Consensus 390 ~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~-------------------~~Ig~~~~i~~svi~~~~~~~ 449 (498)
++.|+++++|.++.|.+++||++|.|+ +|.|.++++..+ +.||++|.|.+++|.++..++
T Consensus 330 ~~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG 409 (451)
T 1yp2_A 330 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIG 409 (451)
T ss_dssp EEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEEC
T ss_pred CeEECCCCEEcceEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEEC
Confidence 356667777755777899999999999 899998888777 999999999999998884444
Q ss_pred chhHHHHhhcCCcccEEeCCCcEEee--eEECCCCEECCCcE
Q 010874 450 TESEIASLLAEGKVPIGVGRNTKIRN--CIIDKNVKIGKDVV 489 (498)
Q Consensus 450 ~~~~~~s~l~~~~~~v~Ig~~~~i~~--~iI~~~~~Ig~~~~ 489 (498)
.++.+...-.-++- ..||++++|+. ++||++|.||+|++
T Consensus 410 ~~~~i~~~~~~~~~-~~ig~~~~ig~~~v~Ig~~a~i~agsv 450 (451)
T 1yp2_A 410 DNVKIINKDNVQEA-ARETDGYFIKSGIVTVIKDALIPSGII 450 (451)
T ss_dssp TTCEECCSSCCSCE-EEGGGTEEEETTEEEECTTCEECTTCB
T ss_pred CCCEEeCCcccccC-ceeCCCEEEcCCEEEECCCcEECCCcc
Confidence 43332111000000 13444444432 34555555555554
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.5e-07 Score=87.76 Aligned_cols=31 Identities=26% Similarity=0.450 Sum_probs=13.0
Q ss_pred eEEcCCCEEC-ceEEe-ccEECCCCEECCCCEE
Q 010874 407 AIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL 437 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i 437 (498)
+.||++|.|+ ++.|. +++||++|.||.+|.|
T Consensus 148 ~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i 180 (220)
T 4ea9_A 148 CRLGAACHLGPASALAGGVSVGERAFLGVGARV 180 (220)
T ss_dssp CEECTTCEECTTCEECSSCEECTTCEECTTCEE
T ss_pred CEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence 3444444444 33332 2444444444444444
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-07 Score=91.11 Aligned_cols=33 Identities=6% Similarity=0.139 Sum_probs=24.8
Q ss_pred ceEEcCCCEEC-ceEE--------------eccEECCCCEECCCCEEc
Q 010874 406 DAIISHGCFLR-ECTV--------------EHSIVGERSRLDYGVELK 438 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v--------------~~siIg~~~~Ig~~~~i~ 438 (498)
++.||++|.|+ ++.| .+++||++|.|+++|.|.
T Consensus 48 ~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~ 95 (259)
T 3hsq_A 48 GSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIH 95 (259)
T ss_dssp TEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEE
T ss_pred CcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEEC
Confidence 47777777777 6666 367888888888888886
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.4e-07 Score=84.77 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=14.1
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
+.||.++.|. ++.||+++.|++++++.
T Consensus 109 v~IG~~~~I~~g~~Ig~~~~IgagsvV~ 136 (192)
T 3mqg_A 109 ATLGANCTVVCGATIGRYAFVGAGAVVN 136 (192)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred cEECCCCEECCCCEECCCCEEcCCCEEC
Confidence 3444444442 45566666666666554
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.1e-07 Score=94.33 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=10.4
Q ss_pred ECCCCEECCCcEEeCCC
Q 010874 478 IDKNVKIGKDVVIVNKD 494 (498)
Q Consensus 478 I~~~~~Ig~~~~i~~~~ 494 (498)
|+.+++||+++.|.+..
T Consensus 265 I~~~v~IG~~~~i~~~~ 281 (374)
T 2iu8_A 265 IAHQVEVGQHSMIVAQA 281 (374)
T ss_dssp ECTTCEECTTCEECTTC
T ss_pred cCCccEECCCCEEccCc
Confidence 45566666666666543
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=98.50 E-value=4.2e-07 Score=84.61 Aligned_cols=32 Identities=13% Similarity=-0.123 Sum_probs=15.7
Q ss_pred hhhhhHHHHh-hcCceEEEEEcc-eEeecCCHHH
Q 010874 332 FGSEIIPAAI-MEHDVQAYIFRD-YWEDIGTIKS 363 (498)
Q Consensus 332 f~~dii~~~i-~~~~I~~~~~~~-~w~dIgt~~d 363 (498)
|..++++.+. .+.++.+|..++ .|..+++.++
T Consensus 14 ~gk~v~~~~~~~~~~v~~f~Dd~~g~~vig~~~~ 47 (194)
T 3bfp_A 14 HGLVCEDVAKNMGYKECIFLDDFKGMKFESTLPK 47 (194)
T ss_dssp HHHHHHHHHHHHTCSEEEEEC--------CCCCC
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCCCCeEECCccc
Confidence 4455555443 247788888775 6888888765
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.7e-07 Score=89.54 Aligned_cols=37 Identities=8% Similarity=0.134 Sum_probs=26.7
Q ss_pred eeee-ceEEcCCCEEC-ceEE-------------eccEECCCCEECCCCEEc
Q 010874 402 CRIK-DAIISHGCFLR-ECTV-------------EHSIVGERSRLDYGVELK 438 (498)
Q Consensus 402 ~~I~-~s~Ig~~~~I~-~~~v-------------~~siIg~~~~Ig~~~~i~ 438 (498)
+.|. ++.||++|.|+ ++.| .+++||+++.|+++|.|.
T Consensus 44 ~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~~I~~~~~I~ 95 (270)
T 1j2z_A 44 VTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMIN 95 (270)
T ss_dssp CEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEECTTCEEC
T ss_pred cEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCCCEECCCeEEc
Confidence 4444 67788888887 6777 466777777777777775
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.7e-07 Score=84.42 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=38.1
Q ss_pred CCCCCccCCCeEecCeeeeceEEcCCCEEC-ceEEec---cEECCCCEECCCCEEcce
Q 010874 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEH---SIVGERSRLDYGVELKDT 440 (498)
Q Consensus 387 i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~---siIg~~~~Ig~~~~i~~s 440 (498)
+..++.|.+|..+.- -.++.||++|+|+ +|.|.+ ..||++|.||++|.|..+
T Consensus 58 ig~~~~I~~~~~~~~--g~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~ 113 (203)
T 1krr_A 58 VGENAWVEPPVYFSY--GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT 113 (203)
T ss_dssp CCSSCEECSCEEESC--STTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESE
T ss_pred cCCCcEEcCCeEEEe--CCCeEECCeeEECCccEEecccceEECCCCEECCCCEEecC
Confidence 445666777765421 0268899999998 787764 799999999999998654
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.8e-07 Score=86.20 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=32.5
Q ss_pred ccCCCeEecC-eeee----ceEEcCCCEECceEE-----eccEECCCCEECCCCEEcce
Q 010874 392 RFLPPTKIDN-CRIK----DAIISHGCFLRECTV-----EHSIVGERSRLDYGVELKDT 440 (498)
Q Consensus 392 ~i~~~~~i~~-~~I~----~s~Ig~~~~I~~~~v-----~~siIg~~~~Ig~~~~i~~s 440 (498)
.+++.+.|.. +.+. ++.||++|.|+.+.+ .+++||++|.|+++|.|.++
T Consensus 60 ~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~ 118 (215)
T 2wlg_A 60 FIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNT 118 (215)
T ss_dssp EECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESC
T ss_pred EECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECC
Confidence 3444444432 4443 388888888885444 46788888888888888764
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=98.48 E-value=5.8e-07 Score=87.51 Aligned_cols=106 Identities=9% Similarity=0.075 Sum_probs=47.8
Q ss_pred CCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEE-eccEECCCCEECCCCEEcceEEeCCcccc---chhHHH
Q 010874 383 PKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQ---TESEIA 455 (498)
Q Consensus 383 ~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v-~~siIg~~~~Ig~~~~i~~svi~~~~~~~---~~~~~~ 455 (498)
+...+++.+.+.++++|+ ++.|. .++|+++++|+ +|.| .+++|+.+++||++|.|.....++..... ......
T Consensus 4 ~~~~I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~ 83 (262)
T 2qia_A 4 KSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTR 83 (262)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCE
T ss_pred CCCeECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccc
Confidence 344445555555555552 33333 24444444444 3444 24444444444444444322222110000 000012
Q ss_pred HhhcCCcccEEeCCCcEEe--------eeEECCCCEECCCcEEe
Q 010874 456 SLLAEGKVPIGVGRNTKIR--------NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 456 s~l~~~~~~v~Ig~~~~i~--------~~iI~~~~~Ig~~~~i~ 491 (498)
..++++ +.|+++++|. .++||+++.|++++.|.
T Consensus 84 ~~IG~~---~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~ 124 (262)
T 2qia_A 84 VEIGDR---NRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIA 124 (262)
T ss_dssp EEECSS---CEECTTCEEECCCTTTTSEEEECSSCEECTTCEEC
T ss_pred eEECCC---ceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEEC
Confidence 334444 5666666664 37777777777666653
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.45 E-value=6.8e-07 Score=82.66 Aligned_cols=93 Identities=14% Similarity=0.228 Sum_probs=52.0
Q ss_pred CCCccCCCeEecCeee-eceEEcCCCEEC-ceEE---eccEECCCCEECCCCEEcceEEeCCccccchhHHH--------
Q 010874 389 TSPRFLPPTKIDNCRI-KDAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIA-------- 455 (498)
Q Consensus 389 ~~~~i~~~~~i~~~~I-~~s~Ig~~~~I~-~~~v---~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~-------- 455 (498)
.++.+.+|.... + .++.||++|+|+ +++| .+..||++|.|+++|.|..+.- .+ ...+..
T Consensus 59 ~~~~I~~p~~~~---~g~~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h----~~-~~~~~~~~~~~~~~ 130 (185)
T 2p2o_A 59 ERLFIEPNFRCD---YGYNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATH----PL-DPHERNSGLEYGKP 130 (185)
T ss_dssp SCEEECSCEEES---CSTTEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEEC----CS-SHHHHHTCCBEECC
T ss_pred CCcEEeccEEEE---ecCCEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCC----cC-ChhhcccCccccCC
Confidence 344555554331 1 157778888887 6776 3678999999999999864310 00 000000
Q ss_pred HhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 456 SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 456 s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
..++++ |.||.++.|. ++.||+++.||+|++|..
T Consensus 131 v~IGd~---v~IG~~~~I~~gv~IG~~~vIgagsvV~~ 165 (185)
T 2p2o_A 131 VVIGHN---VWIGGRAVINPGVTIGDNAVIASGAVVTK 165 (185)
T ss_dssp EEECSS---CEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred eEEcCC---eEECCCCEECCCCEECCCCEECCCCEECC
Confidence 011111 4455555443 567777777777777653
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.43 E-value=2.9e-07 Score=91.89 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=24.1
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||.||+|. +++||++|.||+|++|..
T Consensus 230 v~IGaga~Ilggv~IG~~a~IGagsvV~~ 258 (313)
T 3q1x_A 230 VTIGTGAKVLGNIIVGSHVRIGANCWIDR 258 (313)
T ss_dssp CEECTTCEEESSCEECSSEEECTTCEECS
T ss_pred CEECCCCEECCCcEECCCCEECCCCEECC
Confidence 8899998775 799999999999999854
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.2e-07 Score=95.48 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=61.2
Q ss_pred CCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeC
Q 010874 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG 468 (498)
Q Consensus 390 ~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig 468 (498)
++.|++++.|.++.|.+|+||++|+|+ +|.|.+|+||++|.||++|.|.+++|.++ +.||
T Consensus 324 ~~~ig~~~~I~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~-------------------~~i~ 384 (420)
T 3brk_X 324 SSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHG-------------------VVIP 384 (420)
T ss_dssp SCEECSSCEEESCEEESCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEECTT-------------------CEEC
T ss_pred CCEECCCCEEcCCEEeCcEEcCCCEECCCCEEcceEEcCCCEECCCCEEeceEECCC-------------------CEEC
Confidence 677888888877888999999999999 89999999999999999999999888887 8999
Q ss_pred CCcEEeee
Q 010874 469 RNTKIRNC 476 (498)
Q Consensus 469 ~~~~i~~~ 476 (498)
.++.|...
T Consensus 385 ~~~~i~~~ 392 (420)
T 3brk_X 385 EGLIVGED 392 (420)
T ss_dssp TTCEESSC
T ss_pred CCCEEeCC
Confidence 99888743
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.41 E-value=8.9e-07 Score=88.35 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=45.8
Q ss_pred CCCCCCCCCccCCCeEecCeeeeceEEcCCCEECceEEeccEECCCCEECCCCEEc-ceEEeCCccccchhHH------H
Q 010874 383 PKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI------A 455 (498)
Q Consensus 383 ~~~~i~~~~~i~~~~~i~~~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~------~ 455 (498)
+...+++.+.+.+.++|.+ ++.||++|+|+ .++.||++|.|+++++|. ++.|.++..+.+.+.+ .
T Consensus 6 ~~~~I~p~A~I~~~a~Ig~----~v~Ig~~~~I~----~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~ 77 (305)
T 3t57_A 6 SEVLIHPSAVVHPNAVIGK----GVSVGPYCTIG----SSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGY 77 (305)
T ss_dssp ---CBCTTSEECTTSEECT----TCEECTTCEEC----TTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEE
T ss_pred CCCeECCCCEECCCCEECC----CCEECCCCEEC----CCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCc
Confidence 4445555555555555532 23333333333 134555555555555554 3444444222222222 2
Q ss_pred HhhcCCcccEEeCCCcEEe--------------eeEECCCCEECCCcEEe
Q 010874 456 SLLAEGKVPIGVGRNTKIR--------------NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 456 s~l~~~~~~v~Ig~~~~i~--------------~~iI~~~~~Ig~~~~i~ 491 (498)
+.++++ +.|++++.|+ ..+||+++.|++++.|.
T Consensus 78 ~~IG~~---~~Ig~~a~Ig~~~q~~~~~~~~~~~i~IG~~~~I~~~~~I~ 124 (305)
T 3t57_A 78 TFIGCN---NIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIH 124 (305)
T ss_dssp EEECSS---CEECTTCEEEECCCCTTCCTTCCEEEEECSSCEECTTCEEE
T ss_pred eEECCc---eEECCccEeCccccccceecCCCceEEECCCcccCceEEEe
Confidence 344444 5566666552 14677777777777775
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.40 E-value=6.3e-07 Score=89.08 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=21.7
Q ss_pred ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCC
Q 010874 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGA 445 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~ 445 (498)
.+.||+||+|+ ++.|. ++.||++|.|..++.+. ++|.++
T Consensus 196 GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~ig-v~IGdn 236 (347)
T 3r5d_A 196 GAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAG-VFVGKG 236 (347)
T ss_dssp TEEECTTEEECTTCEECTTEEESSSEEECSEECTT-CEECTT
T ss_pred CCEECCCCEECCCCEECCCCEECCCcEEcCCceEe-EEECCC
Confidence 45566666666 45443 45666666665554443 555555
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=6.7e-07 Score=86.74 Aligned_cols=102 Identities=15% Similarity=0.106 Sum_probs=67.2
Q ss_pred CCccCCCeEecC-eee-----eceEEcCCCEEC-ceEEe---ccEECCCCEECCCCEEc----ceEEeCCccccchhHHH
Q 010874 390 SPRFLPPTKIDN-CRI-----KDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELK----DTVMLGADYYQTESEIA 455 (498)
Q Consensus 390 ~~~i~~~~~i~~-~~I-----~~s~Ig~~~~I~-~~~v~---~siIg~~~~Ig~~~~i~----~svi~~~~~~~~~~~~~ 455 (498)
.+.+++++.+.. +.+ .++.||++|.|+ ++.|. +++||++|.|+++|.|. ++.|.++..++..+.+.
T Consensus 63 ~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~ 142 (252)
T 3jqy_B 63 KLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILR 142 (252)
T ss_dssp EEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEE
T ss_pred EEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEe
Confidence 344555555532 333 357899999999 77774 78999999999999998 78888875555544332
Q ss_pred Hh--------------hcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 010874 456 SL--------------LAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 456 s~--------------l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 493 (498)
.. ...+ ++.||++|.|+ +|+|.++++||++++|...
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~--~v~Igd~v~IG~~a~I~~gv~IG~~~~Igag 193 (252)
T 3jqy_B 143 ASDGHPIFDIHSKKRINWAK--DIIISSYVWVGRNVSIMKGVSVGSGSVIGYG 193 (252)
T ss_dssp CSCSSCEEETTTCBBCCCCC--CEEECSSCEECSSEEECTTCEECTTCEECTT
T ss_pred cCCCcccccccccccccccC--CeEEecCcEECCCCEECCCCEECCCCEECCC
Confidence 11 0011 15677777775 5667777777777777544
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.37 E-value=9.5e-07 Score=81.46 Aligned_cols=47 Identities=17% Similarity=0.348 Sum_probs=32.6
Q ss_pred CCccCCCeEecCeee-eceEEcCCCEEC-ceEEe---ccEECCCCEECCCCEEcc
Q 010874 390 SPRFLPPTKIDNCRI-KDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKD 439 (498)
Q Consensus 390 ~~~i~~~~~i~~~~I-~~s~Ig~~~~I~-~~~v~---~siIg~~~~Ig~~~~i~~ 439 (498)
.+.+.||.... + .++.||++|+|+ ++.|. ...||++|.|+++|.|..
T Consensus 58 ~~~I~~~~~~~---~g~~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~ 109 (182)
T 1ocx_A 58 EAYIEPTFRCD---YGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYT 109 (182)
T ss_dssp SEEECSCEEES---SSTTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEEC
T ss_pred CEEEeCCEEEE---eCCCEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEe
Confidence 35566664431 1 156777888877 67664 568999999999999854
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-06 Score=87.00 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=23.8
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||.||+|. +++||++|.||+|++|..
T Consensus 258 V~IGaga~Il~gv~IGd~a~IGagsvV~~ 286 (310)
T 3f1x_A 258 VIVYSNATILGRVTIGKGATVGGNIWVTE 286 (310)
T ss_dssp CEECTTCEEESSCEECTTCEECSSCEECS
T ss_pred cEEcCCCEECCCcEECCCCEECCCCEECC
Confidence 7888888886 899999999999998863
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-06 Score=85.58 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=18.5
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||.+++|. +++||++|+||+|++|..
T Consensus 223 v~IGaga~Il~gv~IG~~a~IGagsvV~k 251 (287)
T 3mc4_A 223 VLIGAGAKILGNIQVGQCSKIAAGSVVLK 251 (287)
T ss_dssp CEECTTCEEESSCEECTTCEECTTCEECS
T ss_pred CEECCCCEECCCcEECCCCEECCCCEEcc
Confidence 6666666664 577777777777776653
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-06 Score=84.26 Aligned_cols=28 Identities=7% Similarity=-0.001 Sum_probs=24.7
Q ss_pred CCeEE--EEcCceeeecCHHHHHHHHHHcC
Q 010874 214 IENVA--ILCGDHLYRMDYMDFIQSHVDRD 241 (498)
Q Consensus 214 ~e~~L--vl~GD~l~~~dl~~ll~~h~~~~ 241 (498)
.|++| ++++|++...+|.++|..|...+
T Consensus 19 ~EP~L~~~l~~~IL~~~~l~~aLa~~la~k 48 (267)
T 1ssq_A 19 NEPMLASFFHSTILKHQNLGGALSYLLANK 48 (267)
T ss_dssp HCHHHHHHHHHHTTTSSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 38999 99999999999999999997754
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-06 Score=86.02 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=19.7
Q ss_pred ccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 463 VPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 463 ~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
.|+.||++|.|+ +|+| +++||++|+|..
T Consensus 232 ~~V~IGDnv~IGanAtI--gVtIGd~~iIGA 260 (332)
T 3fsy_A 232 HVISIGKRCLLGANSGL--GISLGDDCVVEA 260 (332)
T ss_dssp CBCEECTTCEECTTCEE--CSCBCSSCEECT
T ss_pred cceEECCCCEECCCCEE--eeEECCCCEECC
Confidence 347777777776 6666 777777777754
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.25 E-value=2.5e-06 Score=84.01 Aligned_cols=28 Identities=7% Similarity=0.000 Sum_probs=24.9
Q ss_pred CCeEE--EEcCceeeecCHHHHHHHHHHcC
Q 010874 214 IENVA--ILCGDHLYRMDYMDFIQSHVDRD 241 (498)
Q Consensus 214 ~e~~L--vl~GD~l~~~dl~~ll~~h~~~~ 241 (498)
.|++| ++++|++...+|.++|..|...+
T Consensus 39 ~EP~L~~~l~~~IL~~~~l~~aLa~~La~k 68 (289)
T 1t3d_A 39 CEPMLASFYHATLLKHENLGSALSYMLANK 68 (289)
T ss_dssp HCGGGHHHHHHHTTTCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 48999 99999999999999999997754
|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00012 Score=76.69 Aligned_cols=345 Identities=13% Similarity=0.157 Sum_probs=188.6
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceec-CCcchhHHHHHHHHHh----cCC-CeEEEEeccC-chhHHHHHHh-hcc
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPV-AGCYRLIDIPMSNCIN----SGI-NKIFVLTQFN-SASLNRHIAR-TYF 164 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI-~G~~pLId~~L~~l~~----sGi-~~I~Vv~~~~-~~~l~~hl~~-~~~ 164 (498)
+++..|.||||.||||. ..-||.++|| .|+ .+++..++++.. .|. =..+|.+++. .+...+++.+ .||
T Consensus 75 ~kvavvlLaGGlGTRLG---~~~pKg~~~v~sgk-sflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~~~F 150 (484)
T 3gue_A 75 RQAVVLKLNGGLGTGMG---LNGPKSLLQVKNGQ-TFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYPTL 150 (484)
T ss_dssp TTEEEEEEECCCCGGGT---CSSCGGGSEEETTE-EHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGCHHH
T ss_pred hhcEEEEEcCCcccccC---CCCCceeeecCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhCccc
Confidence 57999999999999996 4689999999 677 899999998775 233 2567888755 5677777754 235
Q ss_pred CCC----CcCCCCeEEEecccCC-----CCCCCCcc-ccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceeeecCHHH
Q 010874 165 GNG----TNFGDGFVEVLAATQT-----PGESGKNW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYMD 232 (498)
Q Consensus 165 ~~~----~~~~~~~V~v~~~~q~-----~~~~~~~~-~~Gta~Alr~~~--~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ 232 (498)
+.. .-|.+..+-.+..+.. +......| +.|.|+...... ..+++......+++.+.+.|.+...-=-.
T Consensus 151 gl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~ 230 (484)
T 3gue_A 151 YEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVR 230 (484)
T ss_dssp HTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHH
T ss_pred CCCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHH
Confidence 421 1122222322221110 00001123 367777665542 34555545677999999999976532255
Q ss_pred HHHHHHHcCCCeEEEEEecCCCCCCCceEEEEC---------CCCC--EEEEEeCCCccccccccccccccCCCcccccc
Q 010874 233 FIQSHVDRDADITISCAAVGESRASDYGLVKID---------NMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQEARK 301 (498)
Q Consensus 233 ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d---------~~gr--V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~ 301 (498)
++..+.++++++.+-+.+...++ ..-|++... .+|+ ++.+.|-|..... ..+ ...
T Consensus 231 ~lG~~~~~~~d~~~kvv~Kt~~d-ekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~-~f~-----------~~~- 296 (484)
T 3gue_A 231 LLDYMHEKQLGFLMEVCRRTESD-KKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDED-SFQ-----------NIA- 296 (484)
T ss_dssp HHHHHHHTTCSEEEEEEECCTTC-CSSEEEEEEC--------CCCEEEEEEGGGSCGGGHH-HHT-----------CTT-
T ss_pred HHHHHHhcCCCEEEEEEECCCCC-CceeEEEEEccccccccCCCCCEEEEEeccCCHHHHh-hhc-----------CCC-
Confidence 78888889999988777655422 234643332 2454 3444444432210 000 000
Q ss_pred CCcceeeeEEEEcHHHHHHHHHhhC-----CC----------C---------CchhhhhHHHHhhcCceEEEEEc-ceEe
Q 010874 302 CPYVASMGVYVFKKDVLFKLLRWRY-----PT----------S---------NDFGSEIIPAAIMEHDVQAYIFR-DYWE 356 (498)
Q Consensus 302 ~~~l~~~GIYif~~~vL~~ll~~~~-----~~----------~---------~df~~dii~~~i~~~~I~~~~~~-~~w~ 356 (498)
..-+.+++-.+++-..+.++++... |. . +.|..++++.+ .+..++.+. .-+.
T Consensus 297 g~~~FNtnNi~~~l~~l~~~l~~~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~---~~~~~ieV~R~rF~ 373 (484)
T 3gue_A 297 KHCFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLF---DRSEAVVVPRERFA 373 (484)
T ss_dssp TSCEEEEEEEEEEHHHHHHHHHHTTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTS---SSEEEEECCGGGCC
T ss_pred CceEeEeeeEEEEHHHHHHHHHhccCcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhC---CccEEEEEChhhcc
Confidence 1235588999999988888877531 10 0 01222222221 244555544 3466
Q ss_pred ecCCHHHHHHHHHHhhccCCCcccc-CCCCCCCCCCccCCCeEecC---eeee--ceEEcCCC-EECceEEeccEECCCC
Q 010874 357 DIGTIKSFYEANMALTKESPAFHFY-DPKTPFYTSPRFLPPTKIDN---CRIK--DAIISHGC-FLRECTVEHSIVGERS 429 (498)
Q Consensus 357 dIgt~~dy~~An~~ll~~~~~~~~~-~~~~~i~~~~~i~~~~~i~~---~~I~--~s~Ig~~~-~I~~~~v~~siIg~~~ 429 (498)
.+.+..|++....++..-.....+. .+.. .. ..|-..+++ .+|. ..-+.+|. .|-++ .+=.|--++
T Consensus 374 PvKn~sdLl~~~Sdly~l~~~~~l~~~~~~-~~----~~P~v~L~~~~~~~v~~f~~rf~~giPsl~~~--~~L~V~Gdv 446 (484)
T 3gue_A 374 PVKTCSDLLALRSDAYQVTEDQRLVLCEER-NG----KPPAIDLDGEHYKMIDGFEKLVKGGVPSLRQC--TSLTVRGLV 446 (484)
T ss_dssp CCSSHHHHHHHHSTTEEECTTSCEEECGGG-TT----CCCEEEECTTTSSSHHHHHHHHTTCCCBCTTE--EEEEEESSE
T ss_pred ccccchHHHHHhhhceeccCCceEEecccc-CC----CCCeEEECchhcCcHHHHHHhcCCCCCChhhC--CEEEEecce
Confidence 7888888887766664432211111 0100 00 011122321 1221 11111211 11111 223555667
Q ss_pred EECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEEC
Q 010874 430 RLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479 (498)
Q Consensus 430 ~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~ 479 (498)
..|+++.++++++..+ +...++.|.+|+++.|.+|.
T Consensus 447 ~fg~~v~l~G~v~i~~--------------~~g~~~~ip~g~~l~~~~~~ 482 (484)
T 3gue_A 447 EFGADVSVRGNVVIKN--------------LKEEPLIIGSGRVLDNEVVV 482 (484)
T ss_dssp EECTTCEEEEEEEEEE--------------CSSSCEEECTTCEEESCEEE
T ss_pred EECCCcEEEEEEEEEc--------------CCCCeeecCCCCEecceecC
Confidence 7888888888887754 12234889999999988763
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=3.9e-06 Score=79.16 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=59.3
Q ss_pred CccCCCeEecCe--eee----ceEEcCCCEEC-ceEEec----cEECCCCEECCCCEE----cceEEeCCccccchhHHH
Q 010874 391 PRFLPPTKIDNC--RIK----DAIISHGCFLR-ECTVEH----SIVGERSRLDYGVEL----KDTVMLGADYYQTESEIA 455 (498)
Q Consensus 391 ~~i~~~~~i~~~--~I~----~s~Ig~~~~I~-~~~v~~----siIg~~~~Ig~~~~i----~~svi~~~~~~~~~~~~~ 455 (498)
+.++++++|.+. .|. ++.||++|.|+ ++.+.+ +.||++|.|++++.+ .+++|.++..+...+.+.
T Consensus 37 v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~ 116 (215)
T 2wlg_A 37 VYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIR 116 (215)
T ss_dssp EEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEE
T ss_pred EEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEE
Confidence 345555555332 332 38899999998 677763 899999999885554 566666666555554442
Q ss_pred Hh---------hc---CCcccEEeCCCcEEe-------eeEECCCCEECCCcEEe
Q 010874 456 SL---------LA---EGKVPIGVGRNTKIR-------NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 456 s~---------l~---~~~~~v~Ig~~~~i~-------~~iI~~~~~Ig~~~~i~ 491 (498)
.. .+ .-.-|+.||++++|+ ++.||+++.||+++++.
T Consensus 117 ~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~ 171 (215)
T 2wlg_A 117 NTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLY 171 (215)
T ss_dssp SCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECSSCEECTTCEEC
T ss_pred CCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEc
Confidence 11 00 001135666666664 45555555555555554
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.20 E-value=9.5e-06 Score=74.72 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=20.2
Q ss_pred CCCccCCCeEec-Ceeee---ceEEcCCCEEC-ceEE
Q 010874 389 TSPRFLPPTKID-NCRIK---DAIISHGCFLR-ECTV 420 (498)
Q Consensus 389 ~~~~i~~~~~i~-~~~I~---~s~Ig~~~~I~-~~~v 420 (498)
.++.+++++.|. ++.|. ++.||++|.|+ ++.|
T Consensus 71 ~~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I 107 (182)
T 1ocx_A 71 YNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHI 107 (182)
T ss_dssp TTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEE
T ss_pred CCEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEE
Confidence 445566666663 45553 46788888887 6666
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.20 E-value=2.3e-06 Score=81.24 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=16.0
Q ss_pred EEeCCCcEEe-------eeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKIR-------NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i~-------~~iI~~~~~Ig~~~~i~ 491 (498)
+.||++|.|+ ++.||++|.||+++++.
T Consensus 120 v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~ 153 (220)
T 4hur_A 120 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVT 153 (220)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred eEECCCcEECCCCEEeCCCEECCCCEEcCCCEEc
Confidence 5555555554 45666666666666664
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.13 E-value=4.3e-06 Score=82.20 Aligned_cols=86 Identities=8% Similarity=0.074 Sum_probs=50.8
Q ss_pred CCCCCCccCCCeEec---Ceeee-ceEEcCCCEEC-ceEEec---------cEECCCCEECCCCEEcc-eEEeCCccccc
Q 010874 386 PFYTSPRFLPPTKID---NCRIK-DAIISHGCFLR-ECTVEH---------SIVGERSRLDYGVELKD-TVMLGADYYQT 450 (498)
Q Consensus 386 ~i~~~~~i~~~~~i~---~~~I~-~s~Ig~~~~I~-~~~v~~---------siIg~~~~Ig~~~~i~~-svi~~~~~~~~ 450 (498)
.|.+++.|++++.|+ ++.|. +++||++|.|+ +++|.. ++||++|.||++|.|.+ +.|.++
T Consensus 166 ~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG~~----- 240 (287)
T 3mc4_A 166 DIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQC----- 240 (287)
T ss_dssp EECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESSCEECTT-----
T ss_pred EECCCCEECCCeEEccCCCeEECCCeEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEECCC-----
Confidence 445556666666664 34444 46777777776 566643 58888888888887754 444444
Q ss_pred hhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEE
Q 010874 451 ESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI 490 (498)
Q Consensus 451 ~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i 490 (498)
+.||.|++|...+-.....+|.-+.+
T Consensus 241 --------------a~IGagsvV~kdVp~~svvvG~PAki 266 (287)
T 3mc4_A 241 --------------SKIAAGSVVLKSVPHNVTVAGVPARI 266 (287)
T ss_dssp --------------CEECTTCEECSCBCTTEEEETTTTEE
T ss_pred --------------CEECCCCEEccccCCCCEEEccCCEE
Confidence 67777776664433333344444443
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.09 E-value=3.3e-06 Score=80.08 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=8.8
Q ss_pred cEECCCCEECCCCEE
Q 010874 423 SIVGERSRLDYGVEL 437 (498)
Q Consensus 423 siIg~~~~Ig~~~~i 437 (498)
++||++|.|++++.|
T Consensus 67 v~IG~~~~Ig~~v~i 81 (220)
T 4hur_A 67 LIIGRFCSIGPGTTF 81 (220)
T ss_dssp EEECSSCEECTTCEE
T ss_pred eEECCCCEECCCCEE
Confidence 456666666666654
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.5e-05 Score=73.50 Aligned_cols=52 Identities=10% Similarity=0.149 Sum_probs=37.0
Q ss_pred CCCCCccCCCeEec-Ceee---eceEEcCCCEEC-ceEEe-------------------ccEECCCCEECCCCEEc
Q 010874 387 FYTSPRFLPPTKID-NCRI---KDAIISHGCFLR-ECTVE-------------------HSIVGERSRLDYGVELK 438 (498)
Q Consensus 387 i~~~~~i~~~~~i~-~~~I---~~s~Ig~~~~I~-~~~v~-------------------~siIg~~~~Ig~~~~i~ 438 (498)
+...+.++++++|. ++.| .++.||++|.|+ +|.|. +++||++|.||.+|.|.
T Consensus 71 ~g~~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~ 146 (185)
T 2p2o_A 71 YGYNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVIN 146 (185)
T ss_dssp CSTTEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEEC
T ss_pred ecCCEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEEC
Confidence 34456677777774 4666 367889999998 77773 46788888888777765
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.7e-05 Score=73.25 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=31.3
Q ss_pred CCccCCCeEec-Ceeee---ceEEcCCCEEC-ceEE-------------------eccEECCCCEECCCCEEc
Q 010874 390 SPRFLPPTKID-NCRIK---DAIISHGCFLR-ECTV-------------------EHSIVGERSRLDYGVELK 438 (498)
Q Consensus 390 ~~~i~~~~~i~-~~~I~---~s~Ig~~~~I~-~~~v-------------------~~siIg~~~~Ig~~~~i~ 438 (498)
...++++++|. +|.|. ...||++|.|+ ++.| ..++||++|.||.+|.|.
T Consensus 76 ~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~ 148 (188)
T 3srt_A 76 NIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIIT 148 (188)
T ss_dssp TEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSCEECTTCEEC
T ss_pred CeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCCcEEcCCCEEC
Confidence 45566666663 45554 34777777777 6666 246677777777776664
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=9.2e-06 Score=75.57 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=17.7
Q ss_pred CCCccCCCeEec-Ceeee---ceEEcCCCEEC-ceEEe
Q 010874 389 TSPRFLPPTKID-NCRIK---DAIISHGCFLR-ECTVE 421 (498)
Q Consensus 389 ~~~~i~~~~~i~-~~~I~---~s~Ig~~~~I~-~~~v~ 421 (498)
.++.|+++++|. +|.|. +.+||++|.|+ ++.|.
T Consensus 75 ~~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~ 112 (195)
T 3nz2_A 75 KTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFY 112 (195)
T ss_dssp TTEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEE
T ss_pred CCeEECCCcEECcCCEEecCceEEECCCCEECCCCEEe
Confidence 344555555553 35443 34667777666 55553
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=4.1e-05 Score=71.67 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=20.2
Q ss_pred CCCccCCCeEec-Ceeee---ceEEcCCCEEC-ceEEe
Q 010874 389 TSPRFLPPTKID-NCRIK---DAIISHGCFLR-ECTVE 421 (498)
Q Consensus 389 ~~~~i~~~~~i~-~~~I~---~s~Ig~~~~I~-~~~v~ 421 (498)
....|+++++|. +|.|. .+.||++|.|+ ++.|.
T Consensus 74 ~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~ 111 (203)
T 1krr_A 74 SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLS 111 (203)
T ss_dssp TTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEE
T ss_pred CCeEECCeeEECCccEEecccceEECCCCEECCCCEEe
Confidence 445566666663 45554 36778888877 66553
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.8e-05 Score=77.15 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=16.6
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
|.||.+++|. +++||++|+||+|+++.
T Consensus 196 v~IGaga~Il~gv~IG~~a~IGagsvV~ 223 (267)
T 1ssq_A 196 VMIGAGAKILGNIEVGKYAKIGANSVVL 223 (267)
T ss_dssp CEECTTCEEESSCEECTTCEECTTCEEC
T ss_pred eEEcCCCEEeCCcEECCCCEECCCCEEc
Confidence 5666665553 56666666666666654
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=97.98 E-value=6.6e-06 Score=77.52 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=15.9
Q ss_pred EEeCCCcEEe-------eeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKIR-------NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i~-------~~iI~~~~~Ig~~~~i~ 491 (498)
+.||++|.|+ ++.||++|.||++++|.
T Consensus 112 v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~ 145 (212)
T 3eev_A 112 TIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVT 145 (212)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 5666666664 45566666666666554
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.2e-05 Score=77.26 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=16.7
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
|.||.++.|. +++||++|+||+|+++.
T Consensus 216 v~IGaga~Ilggv~IG~~a~IGagsvV~ 243 (289)
T 1t3d_A 216 VMIGAGAKILGNIEVGRGAKIGAGSVVL 243 (289)
T ss_dssp CEECTTCEEESSCEECTTCEECTTCEEC
T ss_pred eEECCCCEEecCcEECCCCEECCCCEEc
Confidence 5666665553 56666666666666664
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.1e-05 Score=80.32 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=17.4
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+.||++++|+ +|+|..+++||+|++|..
T Consensus 252 ~~IGd~V~IGaga~Il~gv~IGd~a~IGa 280 (310)
T 3f1x_A 252 PILEDDVIVYSNATILGRVTIGKGATVGG 280 (310)
T ss_dssp CEECTTCEECTTCEEESSCEECTTCEECS
T ss_pred CEECCCcEEcCCCEECCCcEECCCCEECC
Confidence 4666666664 566666666666666654
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.6e-05 Score=72.15 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=33.1
Q ss_pred CCCccCCCeEec-Ceeee---ceEEcCCCEEC-ceEEec-------------------cEECCCCEECCCCEEc
Q 010874 389 TSPRFLPPTKID-NCRIK---DAIISHGCFLR-ECTVEH-------------------SIVGERSRLDYGVELK 438 (498)
Q Consensus 389 ~~~~i~~~~~i~-~~~I~---~s~Ig~~~~I~-~~~v~~-------------------siIg~~~~Ig~~~~i~ 438 (498)
.++.++++++|. +|.|. ++.||++|.|+ ++.|.+ ++||++|.||.+|.|.
T Consensus 77 ~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~ 150 (190)
T 3hjj_A 77 YNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIIN 150 (190)
T ss_dssp TTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEEC
T ss_pred CceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEEC
Confidence 345566666663 46664 56788888888 777732 4677777777777665
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=97.94 E-value=1.1e-05 Score=80.40 Aligned_cols=13 Identities=8% Similarity=0.046 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhhc
Q 010874 361 IKSFYEANMALTK 373 (498)
Q Consensus 361 ~~dy~~An~~ll~ 373 (498)
...|..|+..+..
T Consensus 133 l~~yRlah~L~~~ 145 (313)
T 3q1x_A 133 VIVYRIAHVLYEC 145 (313)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 4455555554433
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=97.85 E-value=5.3e-05 Score=70.62 Aligned_cols=31 Identities=16% Similarity=0.421 Sum_probs=14.9
Q ss_pred CCccCCCeEec-Ceeee---ceEEcCCCEEC-ceEE
Q 010874 390 SPRFLPPTKID-NCRIK---DAIISHGCFLR-ECTV 420 (498)
Q Consensus 390 ~~~i~~~~~i~-~~~I~---~s~Ig~~~~I~-~~~v 420 (498)
++.|+++++|. +|.|. .++||++|.|+ +|.|
T Consensus 74 ~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I 109 (199)
T 3ftt_A 74 NVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGF 109 (199)
T ss_dssp TEEECSSEEECTTEEEECSSCEEECSSEEECTTCEE
T ss_pred CcEECCCeEECCCeEEecCCEEEECCCCEECCCCEE
Confidence 34444444442 34442 24555555555 5544
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00016 Score=68.00 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=9.5
Q ss_pred ceEEcCCCEEC-ceEE
Q 010874 406 DAIISHGCFLR-ECTV 420 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v 420 (498)
++.||++|.|+ +++|
T Consensus 58 ~v~IG~~~~I~~~v~i 73 (212)
T 3eev_A 58 KLVIGSFCSIGSGAVF 73 (212)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred CcEECCCCEECCCCEE
Confidence 45677777776 5554
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00013 Score=69.07 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=11.6
Q ss_pred ccEECCCCEECCCCEE
Q 010874 422 HSIVGERSRLDYGVEL 437 (498)
Q Consensus 422 ~siIg~~~~Ig~~~~i 437 (498)
+.+||++|.|+++|.|
T Consensus 65 ~v~IG~~~~I~~gv~I 80 (219)
T 4e8l_A 65 KLIIGRFCSIGPGTTF 80 (219)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred CEEECCCCEEcCCCEE
Confidence 4577777777777776
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.52 E-value=9.7e-05 Score=75.30 Aligned_cols=16 Identities=19% Similarity=0.565 Sum_probs=7.5
Q ss_pred eEECCCCEECCCcEEe
Q 010874 476 CIIDKNVKIGKDVVIV 491 (498)
Q Consensus 476 ~iI~~~~~Ig~~~~i~ 491 (498)
|+||.++.|.+++.+.
T Consensus 313 avIGAGsVVt~dv~i~ 328 (387)
T 2rij_A 313 CIVDAGIAVLEGTKFL 328 (387)
T ss_dssp CEECTTCEECTTCEEE
T ss_pred CEECCCCEECCCceee
Confidence 3444445554444443
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00011 Score=69.00 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=12.3
Q ss_pred ccEECCCCEECCCCEE
Q 010874 422 HSIVGERSRLDYGVEL 437 (498)
Q Consensus 422 ~siIg~~~~Ig~~~~i 437 (498)
+++||++|.|++++.|
T Consensus 60 ~v~IG~~~~Ig~gv~I 75 (209)
T 1mr7_A 60 KLKIGKFCSIGPGVTI 75 (209)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred CEEECCCCEEcCCCEE
Confidence 3678888888888876
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00027 Score=66.55 Aligned_cols=17 Identities=12% Similarity=0.405 Sum_probs=12.7
Q ss_pred eccEECCCCEECCCCEE
Q 010874 421 EHSIVGERSRLDYGVEL 437 (498)
Q Consensus 421 ~~siIg~~~~Ig~~~~i 437 (498)
....||++|.|+++|.|
T Consensus 55 ~~i~IG~~~~Ig~~v~i 71 (212)
T 1xat_A 55 DKLVIGSFCSIGSGAAF 71 (212)
T ss_dssp CCEEECSSCEECTTCEE
T ss_pred cCEEEcCCCEECCCCEE
Confidence 35678888888888776
|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0032 Score=67.64 Aligned_cols=219 Identities=14% Similarity=0.144 Sum_probs=124.1
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecC---CcchhHHHHHHHHHhc-CC-CeEEEEeccC-chhHHHHHHhhccCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS-GI-NKIFVLTQFN-SASLNRHIARTYFGN 166 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~---G~~pLId~~L~~l~~s-Gi-~~I~Vv~~~~-~~~l~~hl~~~~~~~ 166 (498)
+++..|+||||.||||. ...||.++|++ |+ +++++.++++.+. |. =..+|.+++. .+...+++.+ | +.
T Consensus 113 ~kvavvllaGGlGTRLG---~~~pK~~lpv~~~s~k-s~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~-f-gl 186 (630)
T 3ogz_A 113 CKTVFVLVAGGLGERLG---YSSIKVSLPVETATNT-TYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRE-L-QL 186 (630)
T ss_dssp GGEEEEEECCCEEGGGT---EEEEGGGSBSCTTTCC-BHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHH-T-TC
T ss_pred hhceEEEecCCcccccC---CCCCcccceecCCCCC-cHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHH-h-CC
Confidence 57899999999999987 47899999997 88 9999999998863 43 2457777644 5677788865 4 32
Q ss_pred CCc----CCCCeEEEecccCC--C-CCC-CCcc-ccChHHHHHHHHH--------------------HHHhhhcCCCCeE
Q 010874 167 GTN----FGDGFVEVLAATQT--P-GES-GKNW-FQGTADAVRQFTW--------------------VFEDAKNRNIENV 217 (498)
Q Consensus 167 ~~~----~~~~~V~v~~~~q~--~-~~~-~~~~-~~Gta~Alr~~~~--------------------~i~~~~~~~~e~~ 217 (498)
... |..+.+-.+..... . .+. .-.| +.|.|+....... .+++......+++
T Consensus 187 ~~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi 266 (630)
T 3ogz_A 187 EVPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESI 266 (630)
T ss_dssp CCTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEE
T ss_pred CcccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEE
Confidence 111 11122222210000 0 000 0112 4677776655432 5565555677999
Q ss_pred EEEcCce-eeecCHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEEE--CCCCCE-E-EEEeC---CCcccccccc-cc
Q 010874 218 AILCGDH-LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI--DNMGRI-A-QFAEK---PSGANLKAMQ-VD 288 (498)
Q Consensus 218 Lvl~GD~-l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~--d~~grV-~-~~~EK---p~~~~~~~~~-~~ 288 (498)
.+.+-|. +...---.++-.+.++++++.+-+.+... ...-|.+.. ..+|+. . ...|- +.... ... -+
T Consensus 267 ~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p--~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~--~~~~~~ 342 (630)
T 3ogz_A 267 VFIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVP--KEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSR--ALNKDG 342 (630)
T ss_dssp EEECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCCS--SCSSCEEEEEESSTTSCCEEEEECHHHHHHHHH--HC----
T ss_pred EEEccCCccccccCHHHhHHHHhcCCCEEEEEEECCC--CcceeeEEEEecCCCceeeeeEEEeccCCHhHh--hccCCC
Confidence 9999999 43332334778888899998887766432 223444433 245655 2 23331 11100 000 00
Q ss_pred ccccCCCccccccCCcceeeeEEEEcHHHHHHHHHh
Q 010874 289 TSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (498)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~ 324 (498)
...+. ..........|+...+|+-+.+.+.+..
T Consensus 343 g~~~~---~~~~~~~f~GNtNnl~~~L~a~~~~l~~ 375 (630)
T 3ogz_A 343 GDEVS---DPTGFSPFPGSVNTLVFKLSSYVDRLRE 375 (630)
T ss_dssp -----------CCCSSCEEEEEEEEEHHHHHHHHHH
T ss_pred ccccc---cccccccccccceeeeEEHHHHHHHHHh
Confidence 00000 0000123446899999999866656653
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00037 Score=65.91 Aligned_cols=37 Identities=5% Similarity=0.192 Sum_probs=20.3
Q ss_pred ceEEcCCCEECc---eEEec------cEECCCCEECCCCEEcceEE
Q 010874 406 DAIISHGCFLRE---CTVEH------SIVGERSRLDYGVELKDTVM 442 (498)
Q Consensus 406 ~s~Ig~~~~I~~---~~v~~------siIg~~~~Ig~~~~i~~svi 442 (498)
+..||++++|+. +.+++ ++|+++++||++|.|...+.
T Consensus 34 ~i~IG~~t~i~~~~~~~~~~~vi~~~~~i~~~v~IG~~~~I~~gv~ 79 (219)
T 4e8l_A 34 NILVGEYSYYDSKRGESFEDQVLYHYEVIGDKLIIGRFCSIGPGTT 79 (219)
T ss_dssp SEEECTTCEEECSSSCCGGGGEESCCTTTCCCEEECSSCEECTTCE
T ss_pred CEEECCccEEcCCcCceecceEEeecceeCCCEEECCCCEEcCCCE
Confidence 455666666652 12222 33466677777777754433
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00087 Score=63.02 Aligned_cols=28 Identities=11% Similarity=0.287 Sum_probs=15.6
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||.+|.|. ++.||+++.||+++++..
T Consensus 117 v~IG~~a~I~~gv~Ig~~~~IgagsvV~~ 145 (212)
T 1xat_A 117 VWIGTEAMFMPGVRVGHGAIIGSRALVTG 145 (212)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred CEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 4444444443 566666666666666643
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0007 Score=63.51 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=14.9
Q ss_pred EEeCCCcEEe-------eeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKIR-------NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i~-------~~iI~~~~~Ig~~~~i~ 491 (498)
+.||+++.|+ ++.||+++.||+++++.
T Consensus 114 v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~ 147 (209)
T 1mr7_A 114 TIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVV 147 (209)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred cEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEc
Confidence 5555555554 35555555555555554
|
| >2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0022 Score=59.86 Aligned_cols=105 Identities=17% Similarity=0.183 Sum_probs=70.4
Q ss_pred CceEEEEEe--CCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeE-EEEeccCchhHHHHHHhhccCCCCc
Q 010874 93 KNVAAIILG--GGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI-FVLTQFNSASLNRHIARTYFGNGTN 169 (498)
Q Consensus 93 ~~m~aVILA--aG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I-~Vv~~~~~~~l~~hl~~~~~~~~~~ 169 (498)
+.|.+||++ +..-|||.|. .........++ |||+|+++.+..+++++| ++++++.. + ..+
T Consensus 2 ~~~~~vip~k~g~~KtRL~~~---l~~~~~~~l~~-~ll~~vl~~l~~~~~~~v~vvv~~~~~--~-----~~~------ 64 (211)
T 2i5e_A 2 NAMRAVIPYKKAGAKSRLSPV---LSLQEREEFVE-LMLNQVISSLKGAGIEQVDILSPSVYG--L-----EEM------ 64 (211)
T ss_dssp CCCEEEEECCCTTTTGGGTTT---SCHHHHHHHHH-HHHHHHHHHHHHTTCSEEEEEESSCTT--C-----SSC------
T ss_pred CceEEEEEeCCCCCccccCcc---CCHHHHHHHHH-HHHHHHHHHHHHcCCceEEEEEcCcHH--H-----Hhh------
Confidence 458899999 6677888641 11222226678 999999999999999999 88887642 1 111
Q ss_pred CCCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eeecCHHHHHH
Q 010874 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQ 235 (498)
Q Consensus 170 ~~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~--l~~~dl~~ll~ 235 (498)
++ +.++... .|.+.+++.+...+ .+.++++.||+ +....+..+++
T Consensus 65 ~~---~~~v~~~-----------~gl~~sl~~a~~~~-------~~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 65 TE---ARVLLDE-----------KDLNEALNRYLKEA-------EEPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp CS---SEEEECC-----------SCHHHHHHHHHHHC-------CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred cC---CEEEECC-----------CCHHHHHHHHHHhc-------CCCEEEEcCCcCCCCHHHHHHHHc
Confidence 12 3444321 28899999886443 36899999998 33444666665
|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=81.87 E-value=8.4 Score=34.99 Aligned_cols=106 Identities=16% Similarity=0.194 Sum_probs=64.0
Q ss_pred ceecCCcchhHHHHHHHHHhcCCC--eEEEEeccCchhHHHHHHhhccCCCCcCCCCeEEEecccCCCCCCCCccccChH
Q 010874 119 AVPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (498)
Q Consensus 119 LlpI~G~~pLId~~L~~l~~sGi~--~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V~v~~~~q~~~~~~~~~~~Gta 196 (498)
.+|.-|....|..+|+.+.+.... +|+|+-..-.+.-.+.+ +.+.. ++ ..+.++.. +. .|.+
T Consensus 10 iIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~-~~~~~---~~--~~i~~i~~-~n---------~G~~ 73 (240)
T 3bcv_A 10 IVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKIC-DDYAA---QY--PNIKVIHK-KN---------AGLG 73 (240)
T ss_dssp EEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHH-HHHHH---HC--SSEEEEEC-CC---------CCHH
T ss_pred EEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHH-HHHHh---hC--CCEEEEEC-CC---------CChH
Confidence 445556546888999998875443 56666443222222222 12211 11 12666642 11 5888
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeeecC-HHHHHHHHHHcCCCeEE
Q 010874 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITI 246 (498)
Q Consensus 197 ~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~d-l~~ll~~h~~~~ad~tv 246 (498)
.|...++... ..+.++++..|.+...+ +..+++...+.+.++.+
T Consensus 74 ~a~N~g~~~a------~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~ 118 (240)
T 3bcv_A 74 MACNSGLDVA------TGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVF 118 (240)
T ss_dssp HHHHHHHHHC------CSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHc------CCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEE
Confidence 8888776544 35889999999988777 57777777665666543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 498 | ||||
| d1yp2a2 | 307 | c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr | 6e-68 | |
| d1fxoa_ | 292 | c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa | 2e-30 | |
| d1lvwa_ | 295 | c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri | 1e-25 | |
| d1mc3a_ | 291 | c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | 9e-24 | |
| d1yp2a1 | 135 | b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt | 4e-21 | |
| d1tzfa_ | 259 | c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf | 1e-18 | |
| d2icya2 | 378 | c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 | 7e-18 | |
| d1jyka_ | 229 | c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer | 1e-07 | |
| d1g97a2 | 250 | c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate | 9e-07 | |
| d2cu2a2 | 268 | c.68.1.20 (A:1-268) Putative mannose-1-phosphate g | 5e-05 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 218 bits (556), Expect = 6e-68
Identities = 165/308 (53%), Positives = 217/308 (70%), Gaps = 9/308 (2%)
Query: 90 VDP---KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFV 146
+DP ++V IILGGGAGT+L+PLT + A PAVP+ YRLIDIP+SNC+NS I+KI+V
Sbjct: 4 LDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYV 63
Query: 147 LTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVF 206
LTQFNSASLNRH++R Y N + + + A Q E+ +WFQGTADAVRQ+ W+F
Sbjct: 64 LTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP-DWFQGTADAVRQYLWLF 122
Query: 207 EDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN 266
+ + IL GDHLYRMDY FIQ+H + DADIT++ + E RA+ +GL+KID
Sbjct: 123 ---EEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDE 179
Query: 267 MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326
GRI +FAEKP G L+AM+VDT++LG + A++ P++ASMG+YV KDV+ LLR ++
Sbjct: 180 EGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKF 239
Query: 327 PTSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTK-ESPAFHFYDPK 384
P +NDFGSE+IP A VQAY++ YWEDIGTI++FY AN+ +TK P F FYD
Sbjct: 240 PGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRS 299
Query: 385 TPFYTSPR 392
P YT PR
Sbjct: 300 APIYTQPR 307
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 117 bits (295), Expect = 2e-30
Identities = 60/277 (21%), Positives = 100/277 (36%), Gaps = 48/277 (17%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L P TL + +PV +I P+S + +GI +I +++
Sbjct: 4 GIILAGGSGTRLHPATLAISKQLLPVYD-KPMIYYPLSTLMLAGIREILIISTPQDTPRF 62
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ G+G+N+G +++ A Q G A A N +
Sbjct: 63 QQ----LLGDGSNWG---LDLQYAVQ-------PSPDGLAQAFLIGES-----FIGNDLS 103
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
+L + Y D+ + + S R ++ V YG+V+ D G+ EK
Sbjct: 104 ALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHV--LDPERYGVVEFDQGGKAISLEEK 161
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS--NDFGS 334
P K Y A G+Y + + V + R P+ +
Sbjct: 162 PLEP--------------------KSNY-AVTGLYFYDQQV-VDIARDLKPSPRGELEIT 199
Query: 335 EIIPAAIMEHDVQAYIFRD--YWEDIGTIKSFYEANM 369
++ A + + I W D GT S EA
Sbjct: 200 DVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQ 236
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 104 bits (260), Expect = 1e-25
Identities = 56/285 (19%), Positives = 101/285 (35%), Gaps = 56/285 (19%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
++ I+L GG+GT+L+P+T + +P+ +I P+S + +GI I +++
Sbjct: 2 AHMKGIVLAGGSGTRLYPITRAVSKQLLPIYD-KPMIYYPLSVLMLAGIRDILIISTPRD 60
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN- 211
L R G+G+ FG F + + +G ADA K+
Sbjct: 61 LPLYRD----LLGDGSQFGVRFSYRV----------QEEPRGIADAFIV-------GKDF 99
Query: 212 -RNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 270
+ + +L + Y + + ++ + I V +G+V+ D+ GR+
Sbjct: 100 IGDSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYV--RDPRPFGVVEFDSEGRV 157
Query: 271 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330
EK K Y G+Y + V+ R +
Sbjct: 158 ISIEEK--------------------PSRPKSNY-VVPGLYFYDNQVVEIARRIE---PS 193
Query: 331 DFGSEIIPAAIMEH------DVQAYIFRDYWEDIGTIKSFYEANM 369
D G I + E+ V+ W D GT EA+
Sbjct: 194 DRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASS 238
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Score = 99.1 bits (247), Expect = 9e-24
Identities = 51/278 (18%), Positives = 97/278 (34%), Gaps = 52/278 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L P+T + +P+ +I P+S + +GI +I ++T
Sbjct: 4 GIILAGGSGTRLHPITRGVSKQLLPIYD-KPMIYYPLSVLMLAGIREILIITTPEDKGYF 62
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN--RNI 214
+ G+G+ FG +++ A Q + G A A +
Sbjct: 63 QR----LLGDGSEFG---IQLEYAEQPSPD-------GLAQAFII-------GETFLNGE 101
Query: 215 ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFA 274
+ +L + + + ++ R T+ V +G+V+ D+ R
Sbjct: 102 PSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQV--MDPERFGVVEFDDNFRAISLE 159
Query: 275 EKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN--DF 332
EK + K + A G+Y + V + + P+
Sbjct: 160 EK--------------------PKQPKSNW-AVTGLYFYDSKV-VEYAKQVKPSERGELE 197
Query: 333 GSEIIPAAIMEHDVQAYIFR--DYWEDIGTIKSFYEAN 368
+ I + ++ + W D GT S EA+
Sbjct: 198 ITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEAS 235
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 87.1 bits (215), Expect = 4e-21
Identities = 45/103 (43%), Positives = 74/103 (71%)
Query: 393 FLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTES 452
+LPP+K+ + + D++I GC ++ C + HS+VG RS + G ++D++++GADYY+T++
Sbjct: 1 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDA 60
Query: 453 EIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495
+ L A+G VPIG+G+N I+ IIDKN +IG +V I+NKD
Sbjct: 61 DRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDN 103
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Score = 83.6 bits (205), Expect = 1e-18
Identities = 33/273 (12%), Positives = 73/273 (26%), Gaps = 33/273 (12%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL GG GT+L T+ P V + G ++ M GI + + +
Sbjct: 5 AVILAGGLGTRLSEETIVKPKPMVEIGG-KPILWHIMKMYSVHGIKDFIICCGYKGYVIK 63
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ A + + E T D+ + A+ +
Sbjct: 64 EYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDE 123
Query: 217 VAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
+ +D I H T++ +G + I + +
Sbjct: 124 AFLFTYGDGVADLDIKATIDFHKAHGKKATLTA----TFPPGRFGALDIQAGQVRSFQEK 179
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSE 335
+ + G +V V+ + + E
Sbjct: 180 PK-----------------------GDGAMINGGFFVLNPSVIDLIDNDAT----TWEQE 212
Query: 336 IIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEAN 368
+ + ++ A+ +W+ + T++
Sbjct: 213 PLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLE 245
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 83.1 bits (205), Expect = 7e-18
Identities = 22/206 (10%), Positives = 59/206 (28%), Gaps = 24/206 (11%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCI------NSGINKIFV 146
+ + L GG GT + + V +D+ + + + +
Sbjct: 73 DKLVVLKLNGGLGTT---MGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLM 129
Query: 147 LTQFNSASLNRHIARTYFGNGT-----------NFGDGFVEVLAATQTPGESGKNWFQGT 195
+ ++ + + N D FV + +T E + G
Sbjct: 130 NSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGW--YPPGH 187
Query: 196 ADAVRQFTW--VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253
D + ++ E V + D+L + + ++ + + +
Sbjct: 188 GDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKNEYCMEVTPKTL 247
Query: 254 SRASDYGLVKIDNMGRIAQFAEKPSG 279
+ L+ + ++ + A+ P
Sbjct: 248 ADVKGGTLISYEGKVQLLEIAQVPDE 273
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Score = 50.4 bits (119), Expect = 1e-07
Identities = 31/279 (11%), Positives = 69/279 (24%), Gaps = 66/279 (23%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
AIIL G GT+L PLT V V LI+ + GIN I ++ + +
Sbjct: 6 AIILAAGLGTRLRPLTENTPKALVQVNQ-KPLIEYQIEFLKEKGINDIIIIVGYLKEQFD 64
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ A + K +
Sbjct: 65 YLKEKYGV-------------------------RLVFNDKYADYNNFYSLYLVKEELANS 99
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
I ++L++ + + + + + + ++
Sbjct: 100 YVIDADNYLFKNMFRNDLTRSTYFSVYREDCT---------NEWFLVYGDDYKVQDIIVD 150
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW------RYPTSN 330
GV + K++ + +
Sbjct: 151 SKAGR------------------------ILSGVSFWDAPTAEKIVSFIDKAYVSGEFVD 186
Query: 331 DFGSEIIPAAIMEHDVQAY-IFRDYWEDIGTIKSFYEAN 368
+ ++ I E DV + + +I +++ + +
Sbjct: 187 LYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLE 225
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 47.8 bits (112), Expect = 9e-07
Identities = 41/267 (15%), Positives = 75/267 (28%), Gaps = 50/267 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
AIIL G GT++ VAG +++ + K + + +
Sbjct: 4 AIILAAGKGTRMKSDL---PKVLHKVAGIS-MLEHVFRSVGAIQPEKTVTVVGHKAELVE 59
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+A ++ GT AV + E
Sbjct: 60 EVLAGQTEFV---------------------TQSEQLGTGHAVMMTEPILEG--LSGHTL 96
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
V + + I H++ TI A YG + ++ + + E+
Sbjct: 97 VIAGDTPLITGESLKNLIDFHINHKNVATILTAET--DNPFGYGRIVRNDNAEVLRIVEQ 154
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF---KLLRWRYPTSNDFG 333
+ K + G YVF + LF K + +
Sbjct: 155 K-----------------DATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYI 197
Query: 334 SEIIPAAIME-HDVQAYIFRDYWEDIG 359
+++I V AY +D+ E +G
Sbjct: 198 TDVIGIFRETGEKVGAYTLKDFDESLG 224
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Score = 42.7 bits (99), Expect = 5e-05
Identities = 32/279 (11%), Positives = 77/279 (27%), Gaps = 22/279 (7%)
Query: 94 NVAAIILGGGAGTKLFPLTLRAATP--AVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQF 150
A+++ GG G +L+PL+ R P +P+ L++ + + + +
Sbjct: 2 KTYALVMAGGRGERLWPLS-REDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRR 60
Query: 151 NSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAK 210
+ ++ R A G + +V +D
Sbjct: 61 DQEAVARPYADGIRLLLEPLGRDTAGA---VLLGVAEALKEGAERLLVLPADHYVGDDEA 117
Query: 211 NRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 270
R + + + + I + R + V+ +
Sbjct: 118 YREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGF--VEKPSYAEA 175
Query: 271 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKK-DVLFKLLRWRYPTS 329
++ K N + + + + A + + ++ L
Sbjct: 176 LEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLP------ 229
Query: 330 NDFGSEIIPAAIMEH--DVQAYIFRDYWEDIGTIKSFYE 366
I +ME V+ + R W+D+G ++
Sbjct: 230 ----KISIDYGVMEKAERVRVVLGRFPWDDVGNWRALER 264
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 498 | |||
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 100.0 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 100.0 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 99.98 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 99.97 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 99.96 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.94 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.91 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.7 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.65 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.58 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.58 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.58 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.39 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.39 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 99.37 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.37 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.24 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 99.17 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 99.12 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 99.03 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 99.02 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 98.99 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 98.95 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.78 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 98.76 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 98.74 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 98.74 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 98.67 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 98.62 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 98.56 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.54 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 98.48 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 98.47 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 98.32 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 98.31 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.31 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.23 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.23 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.2 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.19 | |
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 98.04 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 97.96 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 97.95 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 97.91 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 97.81 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 97.8 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 97.78 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 97.72 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 97.63 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 97.59 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 97.54 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 97.5 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 96.84 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 96.72 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 96.68 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=1.5e-45 Score=367.40 Aligned_cols=296 Identities=58% Similarity=1.040 Sum_probs=244.4
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcC-
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF- 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~- 170 (498)
.+++.|||||||.||||+|||..+||||+||+|++|||+|+|++|.++||++|+|+++++.+++.+|+.+.+..+-..+
T Consensus 9 ~~~~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~ 88 (307)
T d1yp2a2 9 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 88 (307)
T ss_dssp HHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC-------
T ss_pred CCceEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhhccccccccccc
Confidence 3569999999999999999999999999999986699999999999999999999999999999999987762211111
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEe
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
..+...++...+... +..|..|++++++.+.+++++ ...++|++++||++++.|+..+++.|+.+++++++++..
T Consensus 89 ~~~~~~~~~~~~~~~--~~~~~~g~~~ai~~~~~~i~~---~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~ 163 (307)
T d1yp2a2 89 NEGFVEVLAAQQSPE--NPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALP 163 (307)
T ss_dssp -CCEEEEEESCSSTT--SCCCCCSHHHHHHHTHHHHTT---SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEE
T ss_pred ccccceeeceeeecc--ccccccchhHHHHHhHHhhhc---cccceEEEecCcceeccchhhhhhhhhhccccceEEEEe
Confidence 112334444444332 245678999999999998873 345789999999999999999999999999999998888
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCC
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~ 330 (498)
+..++.+.||++.+|++|+|..|.|||.......+.++...+++..........++++|+|+|++++|..+++...+...
T Consensus 164 ~~~~~~~~~gvv~~d~~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~ 243 (307)
T d1yp2a2 164 MDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGAN 243 (307)
T ss_dssp ECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCC
T ss_pred cccccccccceEEECCCCcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhcccccc
Confidence 77666778999999999999999999998777777788888877766666677899999999999999988887777778
Q ss_pred chhhhhHHHHhhc-CceEEEEEcceEeecCCHHHHHHHHHHhhccC-CCccccCCCCCCCCCCc
Q 010874 331 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPR 392 (498)
Q Consensus 331 df~~dii~~~i~~-~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~-~~~~~~~~~~~i~~~~~ 392 (498)
+|..++++.++++ .++++|.++|||.|||||++|++||++++++. +.+.+|+++++|+|.++
T Consensus 244 ~~~~d~i~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~~~~~~~~~~~~~~~i~~~~~ 307 (307)
T d1yp2a2 244 DFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPR 307 (307)
T ss_dssp CTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCC
T ss_pred chHHHHHHHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhcCCCchhhccCCCCCccCCCC
Confidence 8899999998876 68999999999999999999999999999876 56689999999999764
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=5.3e-41 Score=332.43 Aligned_cols=234 Identities=25% Similarity=0.387 Sum_probs=196.6
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccC-chhHHHHHHhhccCCCCcCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~-~~~l~~hl~~~~~~~~~~~~~ 172 (498)
+++|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|++++. .+.+.+++ +.+.+++
T Consensus 1 k~KavILAgG~GtRl~plT~~~pKpllpi~gk-PiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~~~~-----~~~~~~g- 73 (292)
T d1fxoa_ 1 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLL-----GDGSNWG- 73 (292)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHH-----TTSGGGT-
T ss_pred CcEEEEECCCCCCcCChhhcCCCcccCEECCE-ehHHHHHHHHHHCCCCEEEEEeCcCCHHHHHHHh-----ccccccC-
Confidence 47999999999999999999999999999999 9999999999999999999888754 44554444 3444555
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
+++.+..|. +++|||+|+..+.++++ ..+.|+++++|++++.|+.++++.|.+.++.+||++.+++
T Consensus 74 --~~I~y~~q~-------~~~Gta~ai~~a~~~i~-----~~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V~ 139 (292)
T d1fxoa_ 74 --LDLQYAVQP-------SPDGLAQAFLIGESFIG-----NDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVL 139 (292)
T ss_dssp --CEEEEEECS-------SCCCGGGHHHHTHHHHT-----TSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECS
T ss_pred --eEEEEccCC-------CCCcHHHHHHhhhhhcC-----CCceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEECC
Confidence 334333343 34799999999999986 2356788899999999999999999999999999999987
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC--CC
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 330 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~--~~ 330 (498)
+ +++||++.+|++|+++.|.|||+.+. ++++.+|+|+|+++++. +++...++ .+
T Consensus 140 ~--p~~yGV~~~d~~~ki~~~~EKP~~p~---------------------Snla~~G~Y~f~~~~~~-~~~~l~~s~rgE 195 (292)
T d1fxoa_ 140 D--PERYGVVEFDQGGKAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVD-IARDLKPSPRGE 195 (292)
T ss_dssp C--GGGSEEEEECTTSCEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHH-HHHHCCCCTTSS
T ss_pred C--HHHCeEEEEcCCCCEeEEEECCCCCC---------------------CCcEEEEEEEEChHHHH-HHHhCCCCCCCc
Confidence 7 56899999999999999999998653 58999999999999986 45655454 34
Q ss_pred chhhhhHHHHhhcCceEEEEEc-c-eEeecCCHHHHHHHHHHhh
Q 010874 331 DFGSEIIPAAIMEHDVQAYIFR-D-YWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 331 df~~dii~~~i~~~~I~~~~~~-~-~w~dIgt~~dy~~An~~ll 372 (498)
..++|+++.+++++++.++.+. + +|+|+||+++|++|+..+.
T Consensus 196 ~eitD~~~~~l~~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~ 239 (292)
T d1fxoa_ 196 LEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 239 (292)
T ss_dssp CCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 5688999999999998888875 3 6999999999999998764
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-39 Score=321.24 Aligned_cols=233 Identities=22% Similarity=0.335 Sum_probs=194.2
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++||++|+|+++++.+.+.++ +++++.+|+
T Consensus 2 MkaiIlagG~GtRl~p~t~~~pK~llpi~~k-p~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~----~~~~g~~~g--- 73 (291)
T d1mc3a_ 2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQR----LLGDGSEFG--- 73 (291)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHH----HHTTSGGGT---
T ss_pred ccEEEECCcCccccchhhcCCCccccEECCE-ehHHHHHHHHHHcCCCEEEEEeCcccHHHHHH----HhCchHhhC---
Confidence 8999999999999999999999999999999 99999999999999999999999887654333 335556676
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
+.+.+..|.. ++|||+||..+.+++++ .+.+||+++|+++..++..+++.|.++++++||++.++++
T Consensus 74 i~I~y~~Q~~-------plGta~Ai~~a~~fi~~-----~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V~d- 140 (291)
T d1mc3a_ 74 IQLEYAEQPS-------PDGLAQAFIIGETFLNG-----EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD- 140 (291)
T ss_dssp CEEEEEECSS-------CCCSTHHHHHTHHHHTT-----SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSC-
T ss_pred cEEEEEECCC-------CCchHHHHHHHHHHhCC-----CCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEECCC-
Confidence 3443334432 37999999999999862 3446777777889999999999999988899999999987
Q ss_pred CCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCC--Cch
Q 010874 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS--NDF 332 (498)
Q Consensus 255 ~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~--~df 332 (498)
+++||++.+|++|+|+.|.|||+.+. ++++++|+|+|+++++.. ++...++. +..
T Consensus 141 -P~~yGVve~d~~g~i~~i~EKP~~p~---------------------Sn~a~~GiY~f~~~v~~~-~~~lk~s~rgE~E 197 (291)
T d1mc3a_ 141 -PERFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVEY-AKQVKPSERGELE 197 (291)
T ss_dssp -CSSSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHHH-HHSCCCCSSSSCC
T ss_pred -cccCCCceeccCcceeEEEECCCCCC---------------------CCeEEEEEEEeChHHHHH-HhcCCCCCCCcee
Confidence 67899999999999999999998653 589999999999999974 45544432 233
Q ss_pred hhhhHHHHhhcCceEEEEEc-c-eEeecCCHHHHHHHHHHh
Q 010874 333 GSEIIPAAIMEHDVQAYIFR-D-YWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 333 ~~dii~~~i~~~~I~~~~~~-~-~w~dIgt~~dy~~An~~l 371 (498)
++++++..+++.+...+.+. + +|+|+||+++|++|+..+
T Consensus 198 Itdl~~~~l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v 238 (291)
T d1mc3a_ 198 ITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFV 238 (291)
T ss_dssp HHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHH
T ss_pred ehHHHHHHHHcCCceEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 67899999999888777764 4 699999999999999865
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=100.00 E-value=9.7e-34 Score=281.49 Aligned_cols=235 Identities=21% Similarity=0.351 Sum_probs=188.9
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
..|+|||||||.||||+|+|..+||||+||+|+ |||+|++++|..+|+++|+|+++++...+.+++. .+...++
T Consensus 2 ~~MkavIlagG~GtRl~p~t~~~PK~ll~i~~k-pii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~~----~~~~~~~- 75 (295)
T d1lvwa_ 2 AHMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLL----GDGSQFG- 75 (295)
T ss_dssp CSCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHH----TTSGGGT-
T ss_pred CCcEEEEECCCCcccCCcccCCCCcccCeECCE-EHHHHHHHHHHHCCCCeEEEEeCcccHHHHHHHh----ccchhcC-
Confidence 469999999999999999999999999999999 9999999999999999999999988755543332 2222333
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
..++++.... ++|||+||..+..+++ ..+.++++++|+++..++..+++.|.+.+.++|+++.+++
T Consensus 76 ~~i~~v~e~~---------~~gta~Al~~a~~~l~-----~~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~~ 141 (295)
T d1lvwa_ 76 VRFSYRVQEE---------PRGIADAFIVGKDFIG-----DSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVR 141 (295)
T ss_dssp SEEEEEECSS---------CCCGGGHHHHTHHHHT-----TSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECS
T ss_pred CEEEEEECCC---------CCCHHHHHHHHHHHcC-----CCCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEEcC
Confidence 2345444222 3699999999998885 2356888888889999999999999999999999998887
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC--CC
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 330 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~--~~ 330 (498)
+ +++||++.++++++|..|.|||..+. ++++++|+|+|++++|.. +....+. .+
T Consensus 142 ~--~~~yG~i~~~~~~~v~~~~EKp~~~~---------------------s~~~~~Giy~~n~~if~~-~~~~~~~~~~e 197 (295)
T d1lvwa_ 142 D--PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVEI-ARRIEPSDRGE 197 (295)
T ss_dssp C--CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHHH-HHHCCCCTTSC
T ss_pred C--CccccEEEECCCCcEEEEeecccCcc---------------------cceeecceEEECHHHHHH-HHhcCCCcCCC
Confidence 6 56899999999999999999998542 368999999999999863 4443222 23
Q ss_pred chhhhhHHHHhhcCceEEEEE--cceEeecCCHHHHHHHHHHh
Q 010874 331 DFGSEIIPAAIMEHDVQAYIF--RDYWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 331 df~~dii~~~i~~~~I~~~~~--~~~w~dIgt~~dy~~An~~l 371 (498)
.+..++++.+++......+.+ +.+|.|+||+++|..|+..+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i 240 (295)
T d1lvwa_ 198 LEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFI 240 (295)
T ss_dssp CCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHH
T ss_pred eeccchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHHH
Confidence 446788888888776555444 57899999999999999876
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=99.98 E-value=2.3e-31 Score=256.10 Aligned_cols=238 Identities=18% Similarity=0.280 Sum_probs=177.1
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhc-cCCCCcC--
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF-- 170 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~-~~~~~~~-- 170 (498)
..+|||||||.||||+|+|.++||||+||+|+ |||+|+|++|.++|+++|+|+++|+.+++.+|+...+ +.....+
T Consensus 2 ~~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gk-plI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~~ 80 (259)
T d1tzfa_ 2 ASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHM 80 (259)
T ss_dssp CCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEG
T ss_pred CceEEEECCCccccCChhhCCCCccceEECCE-EHHHHHHHHHHHcCCCeeeeccchhHHHHHHHHhcchhccccccchh
Confidence 46899999999999999999999999999999 9999999999999999999999999999999997543 1111000
Q ss_pred ------------CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHH
Q 010874 171 ------------GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV 238 (498)
Q Consensus 171 ------------~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~ 238 (498)
....+.++.... ..++++++..+.+.+. ..++|+++++|.+++.++..+++.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~ 146 (259)
T d1tzfa_ 81 AENRMEVHHKRVEPWNVTLVDTGD---------SSMTGGRLKRVAEYVK-----DDEAFLFTYGDGVADLDIKATIDFHK 146 (259)
T ss_dssp GGTEEEETTCCCCCCEEEEEECCS---------SCCHHHHHHHTGGGTT-----TSSCEEEEETTEEECCCHHHHHHHHH
T ss_pred ccccchhhhccccccceeEEeccc---------cccccchhhhhhhhcc-----CCCceEEeccccccccchhhhhhhhc
Confidence 012233333222 3689999988865543 35789999999999999999999999
Q ss_pred HcCCCeEEEEEecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHH
Q 010874 239 DRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (498)
Q Consensus 239 ~~~ad~tv~~~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL 318 (498)
+.+..++...... .+.++.+... .+++..+.+.+... +++.++|+|+++++++
T Consensus 147 ~~~~~~~~~~~~~----~~~~~~~~~~-~~~i~~~~~~~~~~----------------------~~~~~~G~y~~~~~~~ 199 (259)
T d1tzfa_ 147 AHGKKATLTATFP----PGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSVI 199 (259)
T ss_dssp HHCCSEEEEEECC----CCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGGG
T ss_pred ccccceeeccccc----cccCCceecc-cceEEeeeeccccc----------------------eeeecceeccccchhh
Confidence 9888777665533 2456665554 45677666554432 3678999999999977
Q ss_pred HHHHHhhCCCCCchhhhhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhccCCC
Q 010874 319 FKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPA 377 (498)
Q Consensus 319 ~~ll~~~~~~~~df~~dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~~~~~ 377 (498)
..+ + .....+..++++.+++++++++|.++|||.||||++||..+|..+.+..+.
T Consensus 200 ~~i-~---~~~~~~~~~~l~~l~~~~~v~~~~~~g~W~didt~~d~~~~~~~~~~~~~~ 254 (259)
T d1tzfa_ 200 DLI-D---NDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGKAP 254 (259)
T ss_dssp GGC-C---STTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHTTCCT
T ss_pred hhc-c---cCcCccHHHHHHHHHhcCCeEEEEeCCEEEECCCHHHHHHHHHHHHcCCCC
Confidence 532 2 234456678999999999999999999999999999999999988875433
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=2.6e-31 Score=260.35 Aligned_cols=234 Identities=20% Similarity=0.315 Sum_probs=167.0
Q ss_pred ceEEEEEeCCCCCcccCC-ccCCCccceec-CCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHhhccCCCCcC
Q 010874 94 NVAAIILGGGAGTKLFPL-TLRAATPAVPV-AGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PL-T~~~PK~LlpI-~G~~pLId~~L~~l~~-sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~ 170 (498)
++.|||||||.||||||| |..+||||+|| +|+ |||+|+|+++.+ .++++++|++++..+.+.++. ..+
T Consensus 2 Ki~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k-~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~-----~~~--- 72 (268)
T d2cu2a2 2 KTYALVMAGGRGERLWPLSREDRPKPFLPLFEGK-TLLEATLERLAPLVPPERTLLAVRRDQEAVARPY-----ADG--- 72 (268)
T ss_dssp CEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGC-BHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGG-----CSS---
T ss_pred CceEEEecCCCcccCCCcccCCCCceeeecCCCC-CHHHHHHHHhhCcCCccchhhhhhHHHHHHhhhh-----ccc---
Confidence 466999999999999999 67899999997 567 999999999987 477899999999877664332 211
Q ss_pred CCCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCH--HHHHHHH---HHcCCCeE
Q 010874 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY--MDFIQSH---VDRDADIT 245 (498)
Q Consensus 171 ~~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl--~~ll~~h---~~~~ad~t 245 (498)
+.++...+ .+||++|+..+...+.. ...+.|+|++||++++.++ ...+..+ .+.+..+|
T Consensus 73 ----~~ii~E~~---------~~~t~~a~~~~~~~~~~---~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~ 136 (268)
T d2cu2a2 73 ----IRLLLEPL---------GRDTAGAVLLGVAEALK---EGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVA 136 (268)
T ss_dssp ----SEEEEESS---------CCHHHHHHHHHHHHHHH---HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEE
T ss_pred ----cceeeeee---------cCCcccchhhHHHHHhc---cCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEe
Confidence 23332222 26999999988765542 2468899999999998875 3344432 23455566
Q ss_pred EEEEecCCCCCCCceEEEECCCC----CEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHH
Q 010874 246 ISCAAVGESRASDYGLVKIDNMG----RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321 (498)
Q Consensus 246 v~~~~~~~~~~~~~g~v~~d~~g----rV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~l 321 (498)
+...+... ++.||++..++++ +|..|.|||.....+.+ ....+++|+|+|+|++++|.+.
T Consensus 137 ~~~~~~~~--~~~yG~i~~~~~~~~~~~v~~f~EKp~~~~~~~~--------------~~~~~~~N~Giy~f~~~~l~~~ 200 (268)
T d2cu2a2 137 LGLRPTRP--ETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEY--------------IRKGYVWNGGVFAFAPATMAEL 200 (268)
T ss_dssp EEECCSSC--CSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHH--------------HHTTCEEEEEEEEECHHHHHHH
T ss_pred eecccccc--ccccceEEeccccccchhhheeecccchhhhhhh--------------hccCcccchhhhhcchHHHHHH
Confidence 66666544 5789999987643 79999999986543211 1124789999999999998776
Q ss_pred HHhhCCCC---------CchhhhhHH--------HHh--hcCceEEEEEcceEeecCCHHHHHHHH
Q 010874 322 LRWRYPTS---------NDFGSEIIP--------AAI--MEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (498)
Q Consensus 322 l~~~~~~~---------~df~~dii~--------~~i--~~~~I~~~~~~~~w~dIgt~~dy~~An 368 (498)
++...+.. .....+.++ .++ +..++.++.++++|.||||++++++..
T Consensus 201 ~~~~~p~i~~~~~~~~~~~~~~~~f~~l~~iSiDyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~~ 266 (268)
T d2cu2a2 201 FRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF 266 (268)
T ss_dssp HHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred HHhhhHHHHHHHHHHHhcchHHHHHhhCccccchhhhhcccCCceEEecCCCcCCCcCHHHHHHHh
Confidence 66543321 111223332 222 346899999999999999999999764
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.96 E-value=1.8e-29 Score=239.15 Aligned_cols=220 Identities=16% Similarity=0.188 Sum_probs=164.9
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
++|+|||||||.||||+|+|...||||+||+|+ |||+|+|+.|.++|+++|+|+++|..+++ +|+.+.| +
T Consensus 2 m~mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gk-pli~~~i~~l~~~g~~~i~iv~g~~~e~i-~~~~~~~-------~- 71 (229)
T d1jyka_ 2 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQF-DYLKEKY-------G- 71 (229)
T ss_dssp CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGG-THHHHHH-------C-
T ss_pred CceeEEEECCCCcccCCccccCCCcceeEECCE-EHHHHHHHHHHHhCCcccccccccchhhh-hhhhhhc-------c-
Confidence 578999999999999999999999999999999 99999999999999999999999998888 5665443 2
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
++++...+.. ..||+++++.+.++++ ++|++.++|.+++..+.+.+ . ...+......
T Consensus 72 --i~i~~~~~~~-------~~Gt~~sl~~a~~~l~-------~~~ii~~dd~~~~~~~~~~~----~---~~~~~~~~~~ 128 (229)
T d1jyka_ 72 --VRLVFNDKYA-------DYNNFYSLYLVKEELA-------NSYVIDADNYLFKNMFRNDL----T---RSTYFSVYRE 128 (229)
T ss_dssp --CEEEECTTTT-------TSCTHHHHHTTGGGCT-------TEEEEETTEEESSCCCCSCC----C---SEEEEECEES
T ss_pred --cccccccccc-------ccccccccccchhhhc-------ccccccccccccccchhhhh----h---ccccceeeee
Confidence 3444433332 2699999998875553 67888777777665443221 1 1233333333
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHH---HhhCC--
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLL---RWRYP-- 327 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll---~~~~~-- 327 (498)
+ +.+++.+..+++++|..+.++|.. ..+.+|+|+|++..+..+. +..+.
T Consensus 129 ~--~~~~~~~~~~~~~~i~~~~~~~~~------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 182 (229)
T d1jyka_ 129 D--CTNEWFLVYGDDYKVQDIIVDSKA------------------------GRILSGVSFWDAPTAEKIVSFIDKAYVSG 182 (229)
T ss_dssp S--CSSCCEEEECTTCBEEEEECCCSS------------------------EEBCCSEEEECHHHHHHHHHHHHHHHTTT
T ss_pred e--ccccceeEEccCCceeeEEEeccc------------------------ceEEEEEEEEcHHHHHHHHHHHHHhhccc
Confidence 3 456888899999999999988763 3567899999987654333 33221
Q ss_pred -CCCchhhhhHHHHhhcCceEEEEEcc-eEeecCCHHHHHHHHHHh
Q 010874 328 -TSNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 328 -~~~df~~dii~~~i~~~~I~~~~~~~-~w~dIgt~~dy~~An~~l 371 (498)
..+.+..+++...+++..++++.+.+ .|.+|+|++||..|+..+
T Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a~~~~ 228 (229)
T d1jyka_ 183 EFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEIL 228 (229)
T ss_dssp CCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhCCceEEEecCCCEEecCCHHHHHHHHHhh
Confidence 12345566778888889999998876 599999999999998754
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.94 E-value=4.1e-26 Score=217.56 Aligned_cols=232 Identities=19% Similarity=0.252 Sum_probs=178.1
Q ss_pred EEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeE
Q 010874 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (498)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V 175 (498)
.|||||||.||||+| .+||||+||+|+ |||+|+++.|.++|+++|+|+++++.+.+..+.. . . +
T Consensus 3 ~AIIlAaG~GtRl~~---~~PK~L~~i~Gk-pli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~-----~--~-----~ 66 (250)
T d1g97a2 3 FAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLA-----G--Q-----T 66 (250)
T ss_dssp EEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTT-----T--T-----S
T ss_pred EEEEECCCCCCCCCC---CCCceeeEECCe-eHHHHHHHHHHHcCCCeEEEecccccchhhhhcc-----c--c-----c
Confidence 599999999999998 579999999999 9999999999999999999999998776654432 1 1 1
Q ss_pred EEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-ecCHHHHHHHHHHcCCCeEEEEEecCCC
Q 010874 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGES 254 (498)
Q Consensus 176 ~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~-~~dl~~ll~~h~~~~ad~tv~~~~~~~~ 254 (498)
....... ..||.+++..+...++. ...+.+++..+|.++ ..++..+++.|.+.++.+++...+...
T Consensus 67 ~~~~~~~---------~~g~~~~~~~a~~~l~~---~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~- 133 (250)
T d1g97a2 67 EFVTQSE---------QLGTGHAVMMTEPILEG---LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDN- 133 (250)
T ss_dssp EEEECSS---------CCCHHHHHHTTHHHHTT---CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSC-
T ss_pred ccccccc---------ccccchHHHHHHHhhhc---ccCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceecc-
Confidence 1111111 25999999999887752 233455555556544 567899999999999999988887765
Q ss_pred CCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC---CCCc
Q 010874 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSND 331 (498)
Q Consensus 255 ~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~---~~~d 331 (498)
+..||.+..++++++..+.+++..... ....++..+|+|+|+...|...++.... ....
T Consensus 134 -~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------------~~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~~ 195 (250)
T d1g97a2 134 -PFGYGRIVRNDNAEVLRIVEQKDATDF-----------------EKQIKEINTGTYVFDNERLFEALKNINTNNAQGEY 195 (250)
T ss_dssp -CTTSCEEEECTTCCEEEEECGGGCCHH-----------------HHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSC
T ss_pred -cCCCceEEEeeceEEEEeecccccccc-----------------ccccceeeeeeeecchHHHHHHHHHhccCcchhhH
Confidence 457888888889999999888654321 1134678999999999988877664322 2445
Q ss_pred hhhhhHHHHhhc-CceEEEEEcceEee--cCCHHHHHHHHHHhhcc
Q 010874 332 FGSEIIPAAIME-HDVQAYIFRDYWED--IGTIKSFYEANMALTKE 374 (498)
Q Consensus 332 f~~dii~~~i~~-~~I~~~~~~~~w~d--Igt~~dy~~An~~ll~~ 374 (498)
|.+++++.++++ .+|.++.++++|.+ |+|++|+..|+..+.++
T Consensus 196 ~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~~ 241 (250)
T d1g97a2 196 YITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRR 241 (250)
T ss_dssp CGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHHH
Confidence 678888888876 58999999999977 77999999998877543
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.1e-23 Score=200.97 Aligned_cols=232 Identities=15% Similarity=0.193 Sum_probs=159.8
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
+.|++||||||.||||+| .+||||+||+|+ |||+|+|+.+.+.|+++|+|++++..+.+.++.. + .
T Consensus 1 ~~MkvIILAAG~GtRm~~---~~PKpli~i~gk-piie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~~-----~---~-- 66 (248)
T d2oi6a2 1 NAMSVVILAAGKGTRMYS---DLPKVLHTLAGK-AMVQHVIDAANELGAAHVHLVYGHGGDLLKQALK-----D---D-- 66 (248)
T ss_dssp CCEEEEEECCSCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHCC-----C---T--
T ss_pred CCceEEEECCCCCCCCCC---CCCeeeEEECCh-hHHHHHHHHHHHcCCcEEEeccCcccceeeeecc-----c---c--
Confidence 369999999999999998 689999999999 9999999999999999999999999877754432 1 1
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeeecCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
....+.... ..||++++.++...+. ...+++++.+|..+..........+........++..+..
T Consensus 67 ~~~~~~~~~----------~~g~~~~~~~~~~~i~-----~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (248)
T d2oi6a2 67 NLNWVLQAE----------QLGTGHAMQQAAPFFA-----DDEDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLD 131 (248)
T ss_dssp TEEEEECSS----------CCCHHHHHHHHGGGSC-----TTSEEEEEETTCTTCCHHHHHHHHHHCCTTSEEEEEEECS
T ss_pred ccccccccc----------CcccHHHHHhhhhhhc-----cccceeeecCccccccchhHHHHHHHhhccccceeEEEec
Confidence 112222211 2699999999876664 3467888888887643221111112223344445545554
Q ss_pred CCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCC---C
Q 010874 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (498)
Q Consensus 253 ~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~---~ 329 (498)
+ +..++.+..+ ++....+.+++..... .....+..+|.|.|+.+.|.+.+....+. .
T Consensus 132 ~--~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 191 (248)
T d2oi6a2 132 D--PTGYGRITRE-NGKVTGIVEHKDATDE-----------------QRQIQEINTGILIANGADMKRWLAKLTNNNAQG 191 (248)
T ss_dssp C--CTTSCEEEEE-TTEEEEEECGGGCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHTTCCCCSTTC
T ss_pred C--Cccccccccc-cCccceeeeccCCChh-----------------hhhhhhhhhhhhccchHHHHHHHHHhhccccch
Confidence 4 5567776665 4555555443321110 01235788999999999887776543221 2
Q ss_pred CchhhhhHHHHhhc-CceEEEEEcceEe--ecCCHHHHHHHHHHhhc
Q 010874 330 NDFGSEIIPAAIME-HDVQAYIFRDYWE--DIGTIKSFYEANMALTK 373 (498)
Q Consensus 330 ~df~~dii~~~i~~-~~I~~~~~~~~w~--dIgt~~dy~~An~~ll~ 373 (498)
+.+++++++.++++ .+|.++..+++|. .|+||+|+..|++.+.+
T Consensus 192 e~~ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~ 238 (248)
T d2oi6a2 192 EYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQS 238 (248)
T ss_dssp SCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHHH
Confidence 33568889888876 5888888888885 48899999999886644
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=2.2e-16 Score=148.28 Aligned_cols=218 Identities=11% Similarity=0.068 Sum_probs=133.1
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
+++.|||||||.||||. ..+||+|+||+|+ |||+|+++.+.++ ++++|+|+++++.+.+.++.. .. +
T Consensus 2 M~i~AIILAaG~gtRm~---~~~pK~L~~i~gk-plI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~----~~---~- 69 (225)
T d1i52a_ 2 LDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPL----AN---H- 69 (225)
T ss_dssp CCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGG----GG---C-
T ss_pred CCEEEEEeCCCcceeCC---CCCCcceeEECCE-EHHHHHHHHHHhCccccccccccchhhhhhhhhhh----cc---c-
Confidence 46789999999999997 5789999999999 9999999999987 689999999887654432221 11 1
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCCeEEEEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
..+.+.. +. .++.+++..+...+. ..+.+++..+|. +.. .++..+++.... +....+.+.
T Consensus 70 -~~v~~~~--~~---------~~~~~sv~~~~~~~~-----~~~~vl~~~~~~p~i~~~~~~~~~~~~~~-~~~~~v~~~ 131 (225)
T d1i52a_ 70 -PQITVVD--GG---------DERADSVLAGLKAAG-----DAQWVLVHDAARPCLHQDDLARLLALSET-SRTGGILAA 131 (225)
T ss_dssp -TTEEEEE--CC---------SSHHHHHHHHHHTST-----TCSEEEECCTTCTTCCHHHHHHHHGGGGT-CSSCEEEEE
T ss_pred -ccccccc--CC---------cchhHHHHhhhcccC-----ccceeeeeccCCCCCCHHHHHHHHhhhhh-ccccccccc
Confidence 1244433 21 256788988876664 246777888886 333 335555555443 344455555
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCC
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~ 329 (498)
+..+. .......++......++.. .....+.+.|..+.|...++......
T Consensus 132 ~~~d~-----~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~f~~~~l~~~~~~~~~~~ 181 (225)
T d1i52a_ 132 PVRDT-----MKRAEPGKNAIAHTVDRNG-------------------------LWHALTPQFFPRELLHDCLTRALNEG 181 (225)
T ss_dssp ECCSC-----EEEECTTSSSEEEEECCTT-------------------------CEEEEEEEEEEHHHHHHHHHHHHHTT
T ss_pred ceeec-----cchhcccccccccccchHH-------------------------HHHHhhhhhhhhHHHHHHHHHHHhcC
Confidence 54431 1111122233333222111 12334667788887777665533222
Q ss_pred CchhhhhHHHHhh-cCceEEEEEcceEeecCCHHHHHHHHHHh
Q 010874 330 NDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 330 ~df~~dii~~~i~-~~~I~~~~~~~~w~dIgt~~dy~~An~~l 371 (498)
.+.+|....+.. +.++..+.-+..-..|+||+|+..|+..|
T Consensus 182 -~~~tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~l 223 (225)
T d1i52a_ 182 -ATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYL 223 (225)
T ss_dssp -CCCCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred -CCCCcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHHHHh
Confidence 224554444433 45666555332235699999999997654
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.65 E-value=4.8e-16 Score=135.15 Aligned_cols=104 Identities=43% Similarity=0.902 Sum_probs=90.8
Q ss_pred cCCCeEecCeeeeceEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcE
Q 010874 393 FLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK 472 (498)
Q Consensus 393 i~~~~~i~~~~I~~s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~ 472 (498)
++||+++.+++|.+|+||+||+|+++.|++|+||++|+||+++.|++++++++.++....+...........+.||++|+
T Consensus 1 ~lPp~~i~~~~i~~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~ 80 (135)
T d1yp2a1 1 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCH 80 (135)
T ss_dssp CCCCEEEEEEEEEEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCE
T ss_pred CCCCcccCCCEEEeCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceE
Confidence 47999999999999999999999988899999999999999999999999999999888777332221112289999999
Q ss_pred EeeeEECCCCEECCCcEEeCCCCC
Q 010874 473 IRNCIIDKNVKIGKDVVIVNKDES 496 (498)
Q Consensus 473 i~~~iI~~~~~Ig~~~~i~~~~~v 496 (498)
|++|+|++|++||+|+++.+...+
T Consensus 81 I~~~iIg~~~~IG~g~~i~~~~~~ 104 (135)
T d1yp2a1 81 IKRAIIDKNARIGDNVKIINKDNV 104 (135)
T ss_dssp EESEEECTTCEECTTCEECCSSCC
T ss_pred eccceecCCCEECCCcEECCCccc
Confidence 999999999999999999887654
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=99.58 E-value=5.7e-14 Score=132.09 Aligned_cols=217 Identities=10% Similarity=0.078 Sum_probs=119.9
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
+..|||||||.||||. ..+||+|++|+|+ |||+|+++.+.+++ +++|+|+++.+ +.+.+++...+ .
T Consensus 3 K~iAIIlAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~iivv~~~~-~~~~~~~~~~~-~------- 69 (226)
T d1vgwa_ 3 KNIALIPAAGIGVRFG---ADKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPE-DTFADKVQTAF-P------- 69 (226)
T ss_dssp CEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTT-CSTHHHHHHHC-T-------
T ss_pred ceEEEEeCCCCcccCC---cCCCeeeeEECCE-EHHHHHHHHHHhCCCccccceecchh-hhhhhhhcccc-c-------
Confidence 4569999999999996 5789999999999 99999999999876 57777776544 44556665332 1
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhh-hcCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCCeEEEEE
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDA-KNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~-~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
..+.+.... ....++++.++..+.+. .....+.+++..||. +.. ..+..+++.+.+.+.+.++ ..
T Consensus 70 ~~~~~~~g~-----------~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~-~~ 137 (226)
T d1vgwa_ 70 QVRVWKNGG-----------QTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGIL-AV 137 (226)
T ss_dssp TSEEECCCC-----------SSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEE-EE
T ss_pred ceeeccccc-----------cccchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhcccccceee-cc
Confidence 112222211 12344555554433321 122346788888886 333 4578888888777665443 33
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCC
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~ 329 (498)
+..+ ..... ++|.+....++.... ....-..|..+.|...+... ..
T Consensus 138 ~~~~------~~~~~-~~~~i~~~~~r~~~~-------------------------~~~~p~~f~~~~l~~~~~~~--~~ 183 (226)
T d1vgwa_ 138 PVAD------TLKRA-ESGQISATVDRSGLW-------------------------QAQTPQLFQAGLLHRALAAE--NL 183 (226)
T ss_dssp ECCS------CEEEE-SSSBEEEEECCTTEE-------------------------EEEEEEEEEHHHHHHHHHC-----
T ss_pred cccc------cceec-cCCeEEeccchHHHH-------------------------HHHhhhcccHHHHHHHHHHh--hc
Confidence 3322 22333 456777665543321 11123566777776554432 12
Q ss_pred CchhhhhHHHHh-hcCceEEEEEcceEeecCCHHHHHHHHHH
Q 010874 330 NDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (498)
Q Consensus 330 ~df~~dii~~~i-~~~~I~~~~~~~~w~dIgt~~dy~~An~~ 370 (498)
.++ +|....+. .+.++..+.-+.....|+||+|+..|...
T Consensus 184 ~~~-tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~l 224 (226)
T d1vgwa_ 184 GGI-TDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLL 224 (226)
T ss_dssp -CC-CSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred CCC-CcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHHH
Confidence 222 34333222 34667665544445789999999999654
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.58 E-value=5.6e-15 Score=139.19 Aligned_cols=218 Identities=14% Similarity=0.103 Sum_probs=122.6
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
+++.+||||||.||||. ..+||+|+||+|+ |||+|+|+.+.++ .+++|+|+++.....+.+ .+.. .+.
T Consensus 3 k~i~~IIlAaG~GtRm~---~~~pK~l~~l~Gk-pli~~~l~~~~~~~~~~~Iivv~~~~~~~~~~----~~~~---~~~ 71 (226)
T d1w77a1 3 KSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFE----EYEE---SID 71 (226)
T ss_dssp TCEEEEEECCC----------CCCTTTSEETTE-EHHHHHHHHHHTCTTEEEEEEECCGGGTHHHH----TTTT---SCS
T ss_pred CceEEEEeCCccCccCc---CCCCceeeEECCe-eHHHHHHHHHHhhccccceeeccchhhhhhhh----cccc---ccc
Confidence 45789999999999998 4789999999999 9999999999987 578999988754433322 2211 122
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCCeEEEEE
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCA 249 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h~~~~ad~tv~~~ 249 (498)
..+.++. . | ..+.++++.++..+. ...+.+++..||. +.. ..+..+++.+.+.+..+ ...
T Consensus 72 -~~~~~~~--g--g-------~~r~~sv~~~l~~~~----~~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~i--~~~ 133 (226)
T d1w77a1 72 -VDLRFAI--P--G-------KERQDSVYSGLQEID----VNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAV--LGV 133 (226)
T ss_dssp -SEEEEEC--C--C-------SSHHHHHHHHHHTSC----TTCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEEE--EEE
T ss_pred -ccccccc--c--c-------chhhhhhhhhHhhhc----cccccceecccccccccHHHhhhhhhhhhccCcee--ecc
Confidence 1244432 1 1 135788888876654 2347788889998 333 44677888777766533 233
Q ss_pred ecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCC
Q 010874 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (498)
Q Consensus 250 ~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~ 329 (498)
+..+.. .+ ...++.+....+. ...+..-+-++|+.+.|...++......
T Consensus 134 ~~~d~~--~~----~~~~~~~~~~~~r-------------------------~~~~~~~~p~~f~~~~l~~~~~~~~~~~ 182 (226)
T d1w77a1 134 PAKATI--KE----VNSDSLVVKTLDR-------------------------KTLWEMQTPQVIKPELLKKGFELVKSEG 182 (226)
T ss_dssp ECCSCC--CC----BCTTSCBC-------------------------------CCEEEEEEEEECHHHHHHHHHHHHHSC
T ss_pred ccccce--EE----EccCCceeecccc-------------------------hhhhHHHHHHhHhhHHHHHHHHHHHhcC
Confidence 322210 00 0112222111110 0123445678999888877665432222
Q ss_pred CchhhhhHHHH-hhcCceEEEEEcceEeecCCHHHHHHHHHHh
Q 010874 330 NDFGSEIIPAA-IMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 330 ~df~~dii~~~-i~~~~I~~~~~~~~w~dIgt~~dy~~An~~l 371 (498)
.. .+|....+ ..+.++....-+..-..|+||+|+..|+..|
T Consensus 183 ~~-~TD~~~l~~~~g~~v~~v~g~~~n~KItt~eDl~~ae~lL 224 (226)
T d1w77a1 183 LE-VTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL 224 (226)
T ss_dssp CC-CCC-CCTTGGGSSCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred CC-cCcHHHHHHHCCCceEEEECChhhcCcCCHHHHHHHHHHh
Confidence 22 22311111 2346666544332335699999999997755
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Probab=99.58 E-value=5.9e-14 Score=131.45 Aligned_cols=209 Identities=13% Similarity=0.166 Sum_probs=127.3
Q ss_pred EEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCeE
Q 010874 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (498)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~V 175 (498)
|||||||.||||+ ..+||+|++|+|+ |||+|+|+.+.++ ++++|+|+++.+.. +++..... ....+
T Consensus 6 AIILAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~Iivv~~~~~~---~~~~~~~~------~~~~~ 72 (221)
T d1vpaa_ 6 AILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWF---EVVEKRVF------HEKVL 72 (221)
T ss_dssp EEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGH---HHHHTTCC------CTTEE
T ss_pred EEEccCcCcccCC---CCCCcceeEECCE-EHHHHHHHHHHhccccccceEEecchhh---hHHHhhhc------ccccc
Confidence 8999999999997 5789999999999 9999999999987 68999999875433 23322111 11234
Q ss_pred EEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--ecCHHHHHHHHHHcCCCeEEEEEecCC
Q 010874 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGE 253 (498)
Q Consensus 176 ~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~--~~dl~~ll~~h~~~~ad~tv~~~~~~~ 253 (498)
.++... .+...++..+...+. ....+.++++.||..+ ...+..+++.+.+... .+...+..+
T Consensus 73 ~~~~~~-----------~~~~~s~~~~~~~~~---~~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~--~~~~~~~~d 136 (221)
T d1vpaa_ 73 GIVEGG-----------DTRSQSVRSALEFLE---KFSPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLALKNSD 136 (221)
T ss_dssp EEEECC-----------SSHHHHHHHHHHHHG---GGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEEEECCS
T ss_pred cccccc-----------ccccchHHHHHHHHH---hcCCCcEEEeccccccccHHHHHhhhhhhccccc--ccccccccc
Confidence 444321 244566666655543 2345789999999843 3457888888766543 222223221
Q ss_pred CCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCCchh
Q 010874 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (498)
Q Consensus 254 ~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~df~ 333 (498)
.+...+ +++...+ +.. ..+...+-+.|..+.|....+.. .+ .
T Consensus 137 ------~~~~~~-~~~~~~~---~~~-----------------------~~~~~~~~~~~~~~~l~~~~~~~----~~-~ 178 (221)
T d1vpaa_ 137 ------ALVRVE-NDRIEYI---PRK-----------------------GVYRILTPQAFSYEILKKAHENG----GE-W 178 (221)
T ss_dssp ------EEEEEE-TTEEEEE---CCT-----------------------TEEEEEEEEEEEHHHHHHHHTTC----CC-C
T ss_pred ------eeEeec-Cccceec---chH-----------------------HHHHhhhhhhhhHHHHHHHHHhC----CC-C
Confidence 122222 2222211 111 13456677888888777654332 22 2
Q ss_pred hhhHHHHhh-cCceEEEEEcceEeecCCHHHHHHHHHHhh
Q 010874 334 SEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 334 ~dii~~~i~-~~~I~~~~~~~~w~dIgt~~dy~~An~~ll 372 (498)
+|.+..+.. +.++..+.-+.....|+||+|+..|...+-
T Consensus 179 tD~~~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~Ae~llk 218 (221)
T d1vpaa_ 179 ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAR 218 (221)
T ss_dssp SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHH
T ss_pred ccHHHHHHHcCCceEEEecChhhcCCCCHHHHHHHHHHHh
Confidence 444443333 356765554434457999999998875553
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=99.39 E-value=1.8e-11 Score=115.65 Aligned_cols=237 Identities=14% Similarity=0.179 Sum_probs=146.6
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
..|||+|.|.++|+.- |+|.+|+|+ |||+|+++.+.++++++|+|.|. .+.+.++.. . ++. .
T Consensus 2 ~i~iIpAR~gSkrip~------KnL~~i~Gk-pLI~~~i~~a~~s~i~~iiVsTd--~~~i~~~~~-~-------~g~-~ 63 (246)
T d1vh1a_ 2 FVVIIPARYASTRLPG------KPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVE-A-------AGG-E 63 (246)
T ss_dssp CEEEEECCCCCC--CC------TTTCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHH-H-------TTC-E
T ss_pred EEEEEecCCCCcCCCC------chhhhcCCc-cHHHHHHHHHHHcCCCcEEEEec--Cccccchhh-c-------ccc-c
Confidence 4699999999999853 999999999 99999999999999999999985 455655554 2 221 1
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeee--cCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~--~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
+.+..... ..|+..+...+. ... ....+.++.+.||..+. .++..+++.+.....+....+.+..
T Consensus 64 v~~~~~~~---------~~~~~~~~~~~~-~~~---~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~ 130 (246)
T d1vh1a_ 64 VCMTRADH---------QSGTERLAEVVE-KCA---FSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIH 130 (246)
T ss_dssp EEECC--------------CHHHHHHHHH-HTT---CCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECC
T ss_pred ceeecccc---------cccchHHHHHHH-hhc---ccccceeeeeccccccchhhHHHHHhhhhccccccccccccccc
Confidence 33322211 135555444333 221 22346789999998543 4578888888888877766666544
Q ss_pred CCC---CCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCC
Q 010874 253 ESR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (498)
Q Consensus 253 ~~~---~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~ 329 (498)
... ..+..-+..+.+|++..|...+........... .......++...|+|+|+++.|...... .++.
T Consensus 131 ~~~~~~~~~~vk~v~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~giy~~~~~~l~~~~~~-~~s~ 201 (246)
T d1vh1a_ 131 NAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEG--------LETVGDNFLRHLGIYGYRAGFIRRYVNW-QPSP 201 (246)
T ss_dssp CHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHSSC--------CCCCCSCCEEEEEEEEEEHHHHHHHHHS-CCCH
T ss_pred chhcccCCCcceeeecccCcccccccccchhhhhhhhhh--------hhccchhhheecceeeechhhhhhhccC-CCCh
Confidence 311 112334566888999999766543221100000 0001134667889999999999765332 1211
Q ss_pred Cchh--hhhHHHHhhcCceEEEEEcce-EeecCCHHHHHHHHHHh
Q 010874 330 NDFG--SEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMAL 371 (498)
Q Consensus 330 ~df~--~dii~~~i~~~~I~~~~~~~~-w~dIgt~~dy~~An~~l 371 (498)
.+-. -|.++.+-.+.+|.++..+.+ ..||+|++||..|...|
T Consensus 202 ~E~~e~le~lR~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k~m 246 (246)
T d1vh1a_ 202 LEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 246 (246)
T ss_dssp HHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHC
T ss_pred HHHHHhHHHHHHHHCCCceEEEEecCCCCCCCCCHHHHHHHHhcC
Confidence 0000 123433334578988888764 67999999999997654
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=99.39 E-value=2.3e-11 Score=115.17 Aligned_cols=242 Identities=13% Similarity=0.166 Sum_probs=148.8
Q ss_pred eEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCCe
Q 010874 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (498)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~~ 174 (498)
..|||+|.|.++|+.. |.|.+|+|+ |||.|+++++.++++++|+|.|.. +.+.+... . ++. .
T Consensus 2 ~~~iIpAR~gSkRlp~------Knl~~i~Gk-pLI~~~i~~a~~s~i~~IiVsTd~--~~i~~~~~-~-------~~~-~ 63 (255)
T d1vica_ 2 FTVIIPARFASSRLPG------KPLADIKGK-PMIQHVFEKALQSGASRVIIATDN--ENVADVAK-S-------FGA-E 63 (255)
T ss_dssp CEEEEECCCCCSSSTT------GGGCEETTE-EHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHH-H-------TTC-E
T ss_pred EEEEEecCCCCCCCCC------chhhhhCCc-CHHHHHHHHHHHCCCCeEEEEcCC--cccchhhh-h-------hcc-c
Confidence 4689999999999743 999999999 999999999999999999888854 44444432 2 221 1
Q ss_pred EEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeee--cCHHHHHHHHHHcCCCeEEEEEecC
Q 010874 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAAVG 252 (498)
Q Consensus 175 V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~--~dl~~ll~~h~~~~ad~tv~~~~~~ 252 (498)
+....... ..|+..+...+..+. ....+.++++.||..+. .++..+++.+.....+.+.......
T Consensus 64 ~~~~~~~~---------~~~~~~~~~~~~~~~----~~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~ 130 (255)
T d1vica_ 64 VCMTSVNH---------NSGTERLAEVVEKLA----IPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIH 130 (255)
T ss_dssp EEECCCSS---------CCHHHHHHHHHHHTT----CCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred cceeeecc---------CCcchhhHHHHHHhh----ccCCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeecc
Confidence 22222211 135655555443322 23456788899998543 3478888888887777776665543
Q ss_pred CC---CCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCC
Q 010874 253 ES---RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (498)
Q Consensus 253 ~~---~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~ 329 (498)
.. ..........++++++..+...+............. .........+....|+|+|+++.|..+... .++.
T Consensus 131 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~~ 205 (255)
T d1vica_ 131 DAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQD----VQKVQLSDAYLRHIGIYAYRAGFIKQYVQW-APTQ 205 (255)
T ss_dssp CHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTCSC----GGGCCCCTTCEEEEEEEEEEHHHHHHHHHS-CCCH
T ss_pred chhhccCccceeeeeccCCcccccccccccccchhhhhccc----hhhcccccchheeeeeecccHHHHhhhhcc-CCCh
Confidence 21 112344566778889998877654321100000000 000111234567889999999998765432 1111
Q ss_pred Cchhh--hhHHHHhhcCceEEEEEcc-eEeecCCHHHHHHHHHHhh
Q 010874 330 NDFGS--EIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALT 372 (498)
Q Consensus 330 ~df~~--dii~~~i~~~~I~~~~~~~-~w~dIgt~~dy~~An~~ll 372 (498)
..-.+ +.+..+-.+.+|..+..+. .+.||+|++||..|...|-
T Consensus 206 le~~e~le~lr~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~ilk 251 (255)
T d1vica_ 206 LENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILA 251 (255)
T ss_dssp HHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHCCCceeEEEeCCCCCcCCCCHHHHHHHHHHHH
Confidence 00001 1122233456788887765 4789999999999987654
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=1.3e-13 Score=129.73 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=87.2
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~~ 173 (498)
+..|||||||.|+||++++. .||+|+||+|+ |||+|+++++.++|+++|+|++++..... .
T Consensus 2 ~~~avIlA~G~~~r~~r~g~-~~K~L~~i~Gk-pli~~~~~~l~~~~~~~vvv~~~~~~~~~--------------~--- 62 (231)
T d2dpwa1 2 RPSAIVLAGGKEAWAERFGV-GSKALVPYRGR-PMVEWVLEALYAAGLSPVYVGENPGLVPA--------------P--- 62 (231)
T ss_dssp CCEEEEECCCBCSGGGTTTC-SBGGGSEETTE-ETHHHHHHHHHHTTCEEEEESCCSSCSSC--------------C---
T ss_pred CceEEEECCCCCCCCCCCCC-CCceeeEECCe-eHHHHHHHHHHhcCCCeEEeeeeccccce--------------e---
Confidence 46799999999999999884 58999999999 99999999999999999988887643210 0
Q ss_pred eEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eee-cCHHHHHHHHHHcCCCeEEEEEec
Q 010874 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAV 251 (498)
Q Consensus 174 ~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~-~dl~~ll~~h~~~~ad~tv~~~~~ 251 (498)
.... . +..|+.++++.++..+ .++++++.||. +.+ ..+..+++.+. +.+..+.+.+.
T Consensus 63 -~~~~---~--------~~~~~~~~v~~al~~~-------~~~~lv~~~D~P~i~~~~i~~l~~~~~--~~~~~~~~~~~ 121 (231)
T d2dpwa1 63 -ALTL---P--------DRGGLLENLEQALEHV-------EGRVLVATGDIPHLTEEAVRFVLDKAP--EAALVYPIVPK 121 (231)
T ss_dssp -SEEE---C--------CCSSHHHHHHHHHHTC-------CSEEEEEETTCTTCCHHHHHHHHHHCC--SCSEEEEEEEH
T ss_pred -eeec---c--------cchHHHHHHHHHHHhh-------cCceEEeeCCCccCCHHHHHHHHHHhh--hcCceEEEEec
Confidence 1111 1 1258999999887654 37899999998 433 44777777654 34455555444
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=99.37 E-value=3.6e-11 Score=113.21 Aligned_cols=230 Identities=14% Similarity=0.195 Sum_probs=141.3
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~s-Gi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
+.-+||+|.|.++||.. |+|++|+|+ |||+|+++++.++ ++++|+|++.. +.+.+... . ++.
T Consensus 2 k~i~iIpAR~~SkRl~~------Knl~~i~Gk-Pli~~~i~~a~~~~~~d~Iiv~td~--~~i~~~~~-~-------~~~ 64 (245)
T d1h7ea_ 2 KAVIVIPARYGSSRLPG------KPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQ-A-------FGG 64 (245)
T ss_dssp CEEEEEECCSCCSSSTT------GGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHH-H-------TTC
T ss_pred CEEEEEcCCCCCcCCCC------ccccccCCc-cHHHHHHHHHHhCCCCCeEEEeccc--ccchhhhh-h-------cCc
Confidence 46799999999999853 999999999 9999999999987 67888888764 33433332 2 221
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeee--cCHHHHHHHHHHcCCCeEEEEEe
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~~--~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
.+ +....+. .++...+..+...+ ..+.++++.||..+. ..+..+++.+.............
T Consensus 65 -~~-~~~~~~~---------~~~~~~~~~~~~~~------~~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~ 127 (245)
T d1h7ea_ 65 -KA-IMTRNDH---------ESGTDRLVEVMHKV------EADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCH 127 (245)
T ss_dssp -EE-EECCSCC---------SSHHHHHHHHHHHS------CCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred -eE-EEecCcc---------ccccHHHHHHHHhc------CCCEEEEecchhhhcccccchhhhhccccccccccccccc
Confidence 12 2211111 24445555555444 347788899998543 34677788777665544333332
Q ss_pred cCC--CCCC-CceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC
Q 010874 251 VGE--SRAS-DYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (498)
Q Consensus 251 ~~~--~~~~-~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~ 327 (498)
... .... ....+.....+.+..+...+...... .........+|+|.|+++.|..+... .+
T Consensus 128 ~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~~~~~~~~l~~~~~~-~~ 191 (245)
T d1h7ea_ 128 AISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRN---------------AEKARYLKHVGIYAYRRDVLQNYSQL-PE 191 (245)
T ss_dssp EECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTT---------------GGGCCEEEEEEEEEEEHHHHHHGGGS-CC
T ss_pred ccccccccCCcceeeccchhhhhhhhhhhhhhhhhc---------------ccccccceeeeeEEeeeccccccccc-cC
Confidence 211 1111 22334455566777776655432110 01123567889999999998765321 12
Q ss_pred CCCchhh--hhHHHHhhcCceEEEEEcceEeecCCHHHHHHHHHHhhc
Q 010874 328 TSNDFGS--EIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 328 ~~~df~~--dii~~~i~~~~I~~~~~~~~w~dIgt~~dy~~An~~ll~ 373 (498)
+.....+ |.++.+-.+.+|.++..++.|.+|+|++||..|...|-+
T Consensus 192 s~~e~~e~ie~lr~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~il~~ 239 (245)
T d1h7ea_ 192 SMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQ 239 (245)
T ss_dssp CHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHH
T ss_pred ChhhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHh
Confidence 1111011 234322345789988888888899999999999776643
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=1e-11 Score=96.77 Aligned_cols=63 Identities=14% Similarity=0.240 Sum_probs=58.2
Q ss_pred ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCE
Q 010874 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK 483 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~ 483 (498)
++.||++|.|+ ++.|+ ++.||++|+||++|+|++|.++++ +.|+++++|.+|+|++++.
T Consensus 14 ~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~-------------------~~I~~~s~i~~~~Ig~~~~ 74 (78)
T d1fxja1 14 TLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDD-------------------CEISPYTVVEDANLAAACT 74 (78)
T ss_dssp EEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTT-------------------CEECTTCEEESEEECTTCE
T ss_pred cEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCC-------------------CEEcCCcEEECCEECCCCE
Confidence 67888888888 78887 789999999999999999999999 9999999999999999999
Q ss_pred ECCC
Q 010874 484 IGKD 487 (498)
Q Consensus 484 Ig~~ 487 (498)
||+.
T Consensus 75 IGPf 78 (78)
T d1fxja1 75 IGPF 78 (78)
T ss_dssp ESCC
T ss_pred ECcC
Confidence 9973
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=99.17 E-value=2e-10 Score=106.17 Aligned_cols=216 Identities=15% Similarity=0.117 Sum_probs=132.0
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
+.-|||+|.|.++|+. .|+|++|+|+ |||+|+++.+.+++ +++|+|.+. .+.+.+.+ +.| +.
T Consensus 4 ~~iaiIpar~~S~R~p------~K~l~~i~gk-pLi~~~i~~~~~s~~~~~Iiv~td--~~~i~~i~-~~~-------~~ 66 (225)
T d1eyra_ 4 QNIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVSTD--GGLIAEEA-KNF-------GV 66 (225)
T ss_dssp EEEEEEECCSCCSSST------TGGGCEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHH-HHT-------TC
T ss_pred CEEEEEccCCCCcCCC------CccccccCCe-EHHHHHHHHHHHcCCCceEEEeec--cchhhhhh-hhh-------cc
Confidence 4458999999889984 3999999999 99999999999987 588887774 44454444 332 21
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee-e-cCHHHHHHHHHHcCCCeEEEEEe
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~-~-~dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
.+ +.......+ .-.++.+.++.+...+. ...+.++++.||.-+ + .++.++++.+.+.+.+..+.+.+
T Consensus 67 -~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~----~~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~ 135 (225)
T d1eyra_ 67 -EV-VLRPAELAS-----DTASSISGVIHALETIG----SNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACP 135 (225)
T ss_dssp -EE-EECCHHHHS-----TTCCHHHHHHHHHHHHT----CCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEE
T ss_pred -ee-eeecccccc-----ccccchhhccccccccc----cccceEEEeeccccccccccccccceeeccccccccceeec
Confidence 11 111111110 01356666776665543 345789999999943 3 45888888888777776666655
Q ss_pred cCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCCCCC
Q 010874 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (498)
Q Consensus 251 ~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~~~~ 330 (498)
... ..+..+...+++....+......... ..-....+..+.++|+++++.|... ..
T Consensus 136 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~y~~~g~iy~~~~~~l~~~--~~----- 191 (225)
T d1eyra_ 136 MEH---HPLKTLLQINNGEYAPMRHLSDLEQP--------------RQQLPQAFRPNGAIYINDTASLIAN--NC----- 191 (225)
T ss_dssp CSS---CTTSCEEECSSSCEEESSCGGGGTSC--------------GGGSCCEEEEEEEEEEEEHHHHHHH--TS-----
T ss_pred ccc---cccccccccccccccccccccccccc--------------cccCcceeeecceeEEeeHHHHHHc--CC-----
Confidence 543 12333334445555544322111100 0001123567889999999987542 10
Q ss_pred chhhhhHHHHhhcCceEEEEEcc-eEeecCCHHHHHHHHHHh
Q 010874 331 DFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (498)
Q Consensus 331 df~~dii~~~i~~~~I~~~~~~~-~w~dIgt~~dy~~An~~l 371 (498)
.-..++..+..+. ...||+|++||..|...+
T Consensus 192 ----------~~~~~~~~~~i~~~~~~dIdt~eDl~~ae~i~ 223 (225)
T d1eyra_ 192 ----------FFIAPTKLYIMSHQDSIDIDTELDLQQAENIL 223 (225)
T ss_dssp ----------SCCSSCEEEECCTTTTCCCCSHHHHHHHHHHH
T ss_pred ----------ccCCCeEEEEcCccceECCCCHHHHHHHHHHh
Confidence 0123455555543 357999999999997543
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=1.2e-10 Score=105.01 Aligned_cols=110 Identities=11% Similarity=0.134 Sum_probs=74.3
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHhhccCCCCcCC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sGi~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~ 171 (498)
|.++.|||||||.||||.. .||+|+|++|+ |||+|+++.+... +.+|+|+++.+.+.. .. ++
T Consensus 1 M~~i~~iILAgG~ssRmG~----~~K~ll~~~g~-~ll~~~l~~l~~~-~~~ivv~~~~~~~~~-----~~-------~~ 62 (188)
T d1e5ka_ 1 MTTITGVVLAGGKARRMGG----VDKGLLELNGK-PLWQHVADALMTQ-LSHVVVNANRHQEIY-----QA-------SG 62 (188)
T ss_dssp CCSEEEEEECCCCCSSSCS----SCGGGSEETTE-EHHHHHHHHHHHH-CSCEEEECSSSHHHH-----HT-------TS
T ss_pred CCceeEEEEcCCCCcCCCC----CCcccCEECCE-ehhHHHHhhhccc-ccccccccCccHHhh-----hh-------cC
Confidence 6778999999999999972 58999999999 9999999998875 677888877654321 11 11
Q ss_pred CCeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeecCH-HHHHH
Q 010874 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDY-MDFIQ 235 (498)
Q Consensus 172 ~~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~dl-~~ll~ 235 (498)
+.+...... + ..|...++..+.... ..+.++++.||+ +...++ ..+++
T Consensus 63 ---~~v~~d~~~-~------~~~~~~g~~~~~~~~------~~~~vlv~~~D~P~i~~~~i~~L~~ 112 (188)
T d1e5ka_ 63 ---LKVIEDSLA-D------YPGPLAGMLSVMQQE------AGEWFLFCPCDTPYIPPDLAARLNH 112 (188)
T ss_dssp ---CCEECCCTT-C------CCSHHHHHHHHHHHC------CSSEEEEEETTCTTCCTTHHHHHHH
T ss_pred ---CCccccccc-c------ccchhHHHHHHHHhc------ccceEEEeccCCCCCCHHHHHHHHH
Confidence 122221111 1 135666666664332 357899999999 445554 44443
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.03 E-value=4.8e-09 Score=105.06 Aligned_cols=214 Identities=12% Similarity=0.163 Sum_probs=140.5
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecC-CcchhHHHHHHHHHh----cCC-CeEEEEeccC-chhHHHHHHhhc-
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCIN----SGI-NKIFVLTQFN-SASLNRHIARTY- 163 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~-G~~pLId~~L~~l~~----sGi-~~I~Vv~~~~-~~~l~~hl~~~~- 163 (498)
..++.+|+||||.||||. ...||.++||+ |+ ++++..++++.. .|. -.++|.+++. .+...+++.+..
T Consensus 72 l~kvavv~LaGG~GTRLG---~~~pK~~~~v~~~~-t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~~~~~ 147 (378)
T d2icya2 72 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRDGL-TFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTN 147 (378)
T ss_dssp HTTEEEEEEECCBSGGGT---CCSBGGGSEEETTE-EHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGGTT
T ss_pred hCCEEEEEecCCcccccC---CCCCceeeEeCCCC-CHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHhcc
Confidence 477999999999999986 47899999997 65 999999999874 232 3578888755 567778885422
Q ss_pred cCCCCc-CCCCeEEE--------ecccCCCCCCCCcc-ccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCceeeecCHH
Q 010874 164 FGNGTN-FGDGFVEV--------LAATQTPGESGKNW-FQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLYRMDYM 231 (498)
Q Consensus 164 ~~~~~~-~~~~~V~v--------~~~~q~~~~~~~~~-~~Gta~Alr~~~~--~i~~~~~~~~e~~Lvl~GD~l~~~dl~ 231 (498)
++.... |..+.+-. +...... ....| +.|.|+..+.... .+++......+++.+.+.|++..+.--
T Consensus 148 fg~~i~~f~Q~~~P~~~~~~~~~~~~~~~~--~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp 225 (378)
T d2icya2 148 SNVDIHTFNQSKYPRVVADEFVPWPSKGKT--DKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDL 225 (378)
T ss_dssp SSSCEEEEECCCEECEETTTTEEGGGGTCC--SGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCH
T ss_pred CCCceEEEEecccccccCCcccccccccCC--CcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccch
Confidence 332110 00111111 1100000 01123 5699998887643 355555567899999999998765556
Q ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEE
Q 010874 232 DFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVY 311 (498)
Q Consensus 232 ~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIY 311 (498)
.++..|.++++++++-+.+...+....-.++..|..-+|+.+.|.|....... . ......+.+++.+
T Consensus 226 ~~lG~~~~~~~~~~~kvv~Kt~~dek~G~l~~~dg~~~vvEyse~p~e~~~~~-~------------~~~~~~~~N~nn~ 292 (378)
T d2icya2 226 TILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEF-K------------SIEKFKIFNTNNL 292 (378)
T ss_dssp HHHHHHHHHTCSEEEEEEECCTTCCSSCEEEEETTEEEEECGGGSCGGGHHHH-H------------SSSSCCEEEEEEE
T ss_pred HHHHHHHhcCCcceeEEEecCCCCCceeEEEEECCceeeeehhcCChhHHhhh-c------------CCcCcceeeeeee
Confidence 78899999999999988876554333445566665556777777765432100 0 0011235799999
Q ss_pred EEcHHHHHHHHHh
Q 010874 312 VFKKDVLFKLLRW 324 (498)
Q Consensus 312 if~~~vL~~ll~~ 324 (498)
+|+-+.|.++++.
T Consensus 293 ~~~l~~l~~~~~~ 305 (378)
T d2icya2 293 WVNLKAIKKLVEA 305 (378)
T ss_dssp EEEHHHHHHHHHT
T ss_pred eeeHHHHHHHHhh
Confidence 9999999988764
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=8.8e-10 Score=102.21 Aligned_cols=217 Identities=14% Similarity=0.177 Sum_probs=126.7
Q ss_pred CCceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcC
Q 010874 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (498)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~ 170 (498)
|.++.|||+|.|.++||. -|+|.+++|+ |||+|+++++.+++ +++|+|.+. .+.+.+... .|
T Consensus 1 ~~ki~aiIpaR~~S~Rlp------~K~l~~i~gk-pLi~~~i~~~~ks~~id~Iivstd--~~~i~~~~~-~~------- 63 (228)
T d1qwja_ 1 PPHLAALVLARGGSKGIP------LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAK-QF------- 63 (228)
T ss_dssp CCCEEEEEECCSCCSSSS------CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHH-HT-------
T ss_pred CCCEEEEeccCCCCCCCC------CcchhhhCCe-eHHHHHHHHHHhcCCcceEEEecc--hhhhhhhhh-hc-------
Confidence 457899999999999994 3999999999 99999999999876 688888774 344544443 22
Q ss_pred CCCeEEEe-cccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceee--ecCHHHHHHHHHHcCCCeEEE
Q 010874 171 GDGFVEVL-AATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITIS 247 (498)
Q Consensus 171 ~~~~V~v~-~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~l~--~~dl~~ll~~h~~~~ad~tv~ 247 (498)
+ +.++ ......+. -....+.+.++.... ...+.++++.+|.-+ ..++.++++.+++.+.+..+.
T Consensus 64 ~---~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~-----~~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~ 130 (228)
T d1qwja_ 64 G---AQVHRRSSETSKD-----SSTSLDAIVEFLNYH-----NEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFS 130 (228)
T ss_dssp T---CEEEECCGGGSST-----TCCHHHHHHHHHTTC-----TTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEE
T ss_pred C---ccccccccccccc-----cchhhhhhhhccccc-----cccceeeeecccccccCchhhhhhhhhhhccCcccccc
Confidence 2 1221 11111111 024556666554322 234778888899833 346899999998888887766
Q ss_pred EEecCCCCCCCceEEEECCCCCEEEEEeCCCccccccccccccccCCCccccccCCcceeeeEEEEcHHHHHHHHHhhCC
Q 010874 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (498)
Q Consensus 248 ~~~~~~~~~~~~g~v~~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIYif~~~vL~~ll~~~~~ 327 (498)
+...... .+..+.....+........+... ....-....+..+.++|+++.+++.. .
T Consensus 131 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--------------~~~qd~~~~y~~ng~~~~~k~~~~~~---~--- 187 (228)
T d1qwja_ 131 VVRRHQF---RWSEIQKGVREVTEPLNLNPAKR--------------PRRQDWDGELYENGSFYFAKRHLIEM---G--- 187 (228)
T ss_dssp EEEECCC---EECCCCSSTTCCCCBSSSBTTBC--------------CCTTTSCCEEEEEEEEEEEEHHHHHT---T---
T ss_pred ccccccc---cchhhhhhccccccchhhhhhhc--------------cccccccceeeeeeEEEEEeHHHHhh---C---
Confidence 6544321 11111100000000000000000 00000012256677888888776641 1
Q ss_pred CCCchhhhhHHHHhhcCceEEEEEcc-eEeecCCHHHHHHHHHHhhc
Q 010874 328 TSNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALTK 373 (498)
Q Consensus 328 ~~~df~~dii~~~i~~~~I~~~~~~~-~w~dIgt~~dy~~An~~ll~ 373 (498)
. +...++..|..+. ...||+|++||..|.+.+.+
T Consensus 188 ---~---------~~~~k~~~~~i~~~~~idIDt~eD~~~Ae~~l~k 222 (228)
T d1qwja_ 188 ---Y---------LQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (228)
T ss_dssp ---C---------SSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred ---C---------cCCCCEEEEEcCccceECCCCHHHHHHHHHHHHH
Confidence 0 1124566666653 35799999999999887764
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.99 E-value=5.8e-10 Score=95.90 Aligned_cols=82 Identities=18% Similarity=0.301 Sum_probs=64.5
Q ss_pred CCccCCCeEecCeeeeceEEcCCCEEC-ceEEeccEECCC-------------------CEECCCCEEcceEEeCCcccc
Q 010874 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGER-------------------SRLDYGVELKDTVMLGADYYQ 449 (498)
Q Consensus 390 ~~~i~~~~~i~~~~I~~s~Ig~~~~I~-~~~v~~siIg~~-------------------~~Ig~~~~i~~svi~~~~~~~ 449 (498)
++.+++++.|+++.|.+|+||++|+|+ ++.|++++++.+ ++||++|+|+++++..+
T Consensus 14 ~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~---- 89 (135)
T d1yp2a1 14 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKN---- 89 (135)
T ss_dssp EEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTT----
T ss_pred eCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCC----
Confidence 456888888888888899999999999 899988877654 78999999999999988
Q ss_pred chhHHHHhhcCCcccEEeCCCcEEee--------------------eEECCCCEECCCcEE
Q 010874 450 TESEIASLLAEGKVPIGVGRNTKIRN--------------------CIIDKNVKIGKDVVI 490 (498)
Q Consensus 450 ~~~~~~s~l~~~~~~v~Ig~~~~i~~--------------------~iI~~~~~Ig~~~~i 490 (498)
+.||+++.|.+ ++|++|+.|++|++|
T Consensus 90 ---------------~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~vI 135 (135)
T d1yp2a1 90 ---------------ARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 135 (135)
T ss_dssp ---------------CEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred ---------------CEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcCC
Confidence 56666666532 456777777776653
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Probab=98.95 E-value=4.8e-10 Score=103.47 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=82.2
Q ss_pred ceEEEEEeCCCCCcccCCccCCCccceecCCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHhhccCCCCcCCC
Q 010874 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (498)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PK~LlpI~G~~pLId~~L~~l~~sG-i~~I~Vv~~~~~~~l~~hl~~~~~~~~~~~~~ 172 (498)
++.+||||||.|+||. ..+||+|++++|+ |||+|+++++.+.. +++|+|++.. .+ ++ +.+ ..
T Consensus 1 ~is~IILAaG~g~Rmg---~~~pK~~~~i~gk-pii~~~l~~~~~~~~~~~Ivvv~~~-~~----~~-~~~-~~------ 63 (205)
T d1w55a1 1 EMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSSN-IT----YM-KKF-TK------ 63 (205)
T ss_dssp CEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEESC-HH----HH-HTT-CS------
T ss_pred CeEEEEeCCccCeeCC---cCCCceeEEECCE-EHHHHHHHHHHhhcccccccccccc-cc----cc-ccc-cc------
Confidence 3679999999999997 4689999999999 99999999998864 6777666543 22 22 222 11
Q ss_pred CeEEEecccCCCCCCCCccccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eeec-CHHHHHHHHHHcCCCeEEEEEe
Q 010874 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDADITISCAA 250 (498)
Q Consensus 173 ~~V~v~~~~q~~~~~~~~~~~Gta~Alr~~~~~i~~~~~~~~e~~Lvl~GD~-l~~~-dl~~ll~~h~~~~ad~tv~~~~ 250 (498)
.+.++.. | ..-.++++.++..++ .+.+++..||. +.+. .+..+++.+.+. ++.+.+.+
T Consensus 64 -~~~~v~G----g-------~~r~~Sv~~gl~~~~------~~~VlIhd~~rP~i~~~~i~~li~~~~~~--~~~i~~~~ 123 (205)
T d1w55a1 64 -NYEFIEG----G-------DTRAESLKKALELID------SEFVMVSDVARVLVSKNLFDRLIENLDKA--DCITPALK 123 (205)
T ss_dssp -SSEEEEC----C-------SSHHHHHHHHHTTCC------SSEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEEEC
T ss_pred -ccccccc----c-------cchhhhhhhhhhhhh------hcceeeeccCcccCcHHHHHHHHhhhhcc--cccccccc
Confidence 1233321 1 134577887775553 46788889997 4443 467777766543 44555555
Q ss_pred cCC
Q 010874 251 VGE 253 (498)
Q Consensus 251 ~~~ 253 (498)
+.+
T Consensus 124 ~~d 126 (205)
T d1w55a1 124 VAD 126 (205)
T ss_dssp CCS
T ss_pred ccc
Confidence 443
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=2.8e-09 Score=82.64 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=44.2
Q ss_pred CccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCC
Q 010874 391 PRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (498)
Q Consensus 391 ~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~ 445 (498)
+.+++.+.|+ ++.|. ++.||+||+|+ +|.|++|+||++|+|+++|.|++|++.++
T Consensus 15 v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~~Ig~~ 72 (78)
T d1fxja1 15 LTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAA 72 (78)
T ss_dssp EEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEESEEECTT
T ss_pred EEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEECCEECCC
Confidence 3344444442 34443 78999999999 99999999999999999999999988887
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=98.76 E-value=1.8e-08 Score=92.95 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=18.5
Q ss_pred ceEEcCCCEEC-ceEEe-----ccEECCCCEECCCCEEc
Q 010874 406 DAIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELK 438 (498)
Q Consensus 406 ~s~Ig~~~~I~-~~~v~-----~siIg~~~~Ig~~~~i~ 438 (498)
++.||+||+|+ +|.|+ +..||++|.|+++|.|.
T Consensus 40 ~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~ 78 (210)
T d1qrea_ 40 EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLH 78 (210)
T ss_dssp SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEE
T ss_pred ceEECCCCEEccCeeeecccCCceEEcccceeeeeeEec
Confidence 45555555555 55552 34566666666666663
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=98.74 E-value=1.8e-08 Score=93.04 Aligned_cols=52 Identities=8% Similarity=0.103 Sum_probs=42.3
Q ss_pred ccEECCCCEECCCCEEc-ceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 422 HSIVGERSRLDYGVELK-DTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 422 ~siIg~~~~Ig~~~~i~-~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
.++||++|.||+++.|. ++.|.++ +.||.++.|.++.||+++.|++++.+.+
T Consensus 103 ~~~IG~~v~IG~~~~i~g~~~IGd~-------------------~~IG~gs~i~~~~IG~~~vIg~~svv~g 155 (210)
T d1qrea_ 103 AVYIGNNVSLAHQSQVHGPAAVGDD-------------------TFIGMQAFVFKSKVGNNCVLEPRSAAIG 155 (210)
T ss_dssp SEEECTTCEECTTCEEEEEEEECTT-------------------CEECTTCEEEEEEECTTCEECTTCEEES
T ss_pred ceeeccccccccccccccCCcccCC-------------------cEeeCCccccccccccCcEEecCcEecC
Confidence 47899999999999996 4566666 7888888888888888888888877765
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=98.74 E-value=4.8e-08 Score=88.83 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=65.3
Q ss_pred eEeecCCHHHHHHHHHHhhccC-CCccccCCCCCCCCCCccC--CCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEEC
Q 010874 354 YWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRFL--PPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVG 426 (498)
Q Consensus 354 ~w~dIgt~~dy~~An~~ll~~~-~~~~~~~~~~~i~~~~~i~--~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg 426 (498)
+..-|+++..-.+....+.+.. .-..+++|.+.+...+.+. +++.|. ++.|. ++.||++|.|+ ++.|. ++.||
T Consensus 49 ~~iaIG~~~~R~~~~~~~~~~~~~~~~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig 128 (193)
T d3bswa1 49 FFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIG 128 (193)
T ss_dssp EEECCSCHHHHHHHHHHHHHTTCCBCCEECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred EEEEECCcHHHHHHHHHhhhhccccceecCCCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceeeecc
Confidence 3456888765444444444332 2234555555555554443 234442 34443 45556666665 55553 45666
Q ss_pred CCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEe
Q 010874 427 ERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 427 ~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
++|+|++++.+.+.+..+++ +.||.++.|. ++.||+++.||+++++.
T Consensus 129 ~~~~i~~~~~i~g~v~Ig~~------------------~~IG~~s~I~~~v~Ig~~~~IgagsvV~ 176 (193)
T d3bswa1 129 EFSHVSVGAKCAGNVKIGKN------------------CFLGINSCVLPNLSLADDSILGGGATLV 176 (193)
T ss_dssp TTCEECTTCEECTTCEECTT------------------CEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred ccccccccccccccceeecc------------------ccCCceeeEcCCeEECCCCEECCCCEEC
Confidence 66666666665443332221 6666666664 67788888888887774
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=98.67 E-value=1.4e-08 Score=96.99 Aligned_cols=29 Identities=21% Similarity=0.453 Sum_probs=14.6
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 493 (498)
+.||+++.|. ++.|+.++.||+++.+.+.
T Consensus 109 T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~ 138 (262)
T d2jf2a1 109 TKVGSDNLLMINAHIAHDCTVGNRCILANN 138 (262)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTT
T ss_pred eEECCCCEEecccccccccccCCCeeecCc
Confidence 3455555553 3455555555555555544
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=98.62 E-value=2.9e-08 Score=94.49 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=28.2
Q ss_pred CCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEE
Q 010874 383 PKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL 437 (498)
Q Consensus 383 ~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i 437 (498)
|.+-|.+++.|+++++|+ .|.|. +++||++|+|+ ++.|. ++.||++|.|.++|.|
T Consensus 5 ~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~I 63 (259)
T d1j2za_ 5 KTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL 63 (259)
T ss_dssp TTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEE
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEE
Confidence 333344444444444442 24442 45556666665 55553 5666666666666665
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=1.2e-07 Score=86.61 Aligned_cols=97 Identities=20% Similarity=0.282 Sum_probs=58.8
Q ss_pred CCCCCCccCCCeEec-CeeeeceEEcCCCEEC-ceEEe---ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcC
Q 010874 386 PFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAE 460 (498)
Q Consensus 386 ~i~~~~~i~~~~~i~-~~~I~~s~Ig~~~~I~-~~~v~---~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~ 460 (498)
.+..++.|+||++++ +. +..||++|+|+ +|+|. ...||++|.|+++|.|.......+...... ....+
T Consensus 56 ~iG~~~~I~p~~~i~~G~---nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~---~~~~~- 128 (200)
T d1krra_ 56 TVGENAWVEPPVYFSYGS---NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKN---GEMYS- 128 (200)
T ss_dssp BCCSSCEECSCEEESCST---TEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTT---CCBEE-
T ss_pred cCCCCCEEcCCEEEecCC---ccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceeccccc---ceeec-
Confidence 456778888888774 22 56788888887 77773 468999999999999976533322111100 00111
Q ss_pred CcccEEeCCCcEEe-eeEECCCCEECCCcEEe
Q 010874 461 GKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 461 ~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
-|+.||++++|+ +|+|.++++||++++|.
T Consensus 129 --~~v~Igd~v~IG~~~~I~~Gv~IG~~~vIg 158 (200)
T d1krra_ 129 --FPITIGNNVWIGSHVVINPGVTIGDNSVIG 158 (200)
T ss_dssp --CCEEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred --ceEEEccCcccceeeecccccccCCCcEEe
Confidence 236777777775 45555555555544443
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.54 E-value=1.1e-07 Score=89.18 Aligned_cols=79 Identities=15% Similarity=0.309 Sum_probs=41.9
Q ss_pred eEEcCCCEECceEEeccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEE-eeeEECCCCEEC
Q 010874 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIG 485 (498)
Q Consensus 407 s~Ig~~~~I~~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i-~~~iI~~~~~Ig 485 (498)
++||+||.|. .+++||..|.||.+|+|...+-+++ .+++......+++++ |.||.+|.| .+++|+++|.||
T Consensus 132 A~ig~~~mid----t~a~vgs~aqIG~~vhis~g~~igG-vlep~~~~p~iIed~---~~IGa~s~v~egv~Vg~~avi~ 203 (274)
T d3tdta_ 132 AYVDEGTMVD----TWATVGSCAQIGKNVHLSGGVGIGG-VLEPLQANPTIIEDN---CFIGARSEVVEGVIVEEGSVIS 203 (274)
T ss_dssp CEECTTCEEC----TTEEECTTCEECTTCEECTTCEECC-SBTTBCSSCCEECTT---CEECTTCEECTTCEECTTCEEC
T ss_pred cEEcCCcEEc----ccceecceeEECCCeEECCCcEEEe-ccccCCCCCcEEecC---cEeccCceEecCEEecCceEec
Confidence 4455555554 1344455555555555533332222 122222222233333 666666655 478899999999
Q ss_pred CCcEEeCC
Q 010874 486 KDVVIVNK 493 (498)
Q Consensus 486 ~~~~i~~~ 493 (498)
+|+.|..+
T Consensus 204 ~gv~i~~~ 211 (274)
T d3tdta_ 204 MGVYLGQS 211 (274)
T ss_dssp TTCEECTT
T ss_pred cceEEecc
Confidence 99988764
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=98.48 E-value=2e-07 Score=84.55 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=16.5
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+.||++|+|+ +|+|.++++||++++|..
T Consensus 143 v~Ig~~~~IG~~s~I~~~v~Ig~~~~Iga 171 (193)
T d3bswa1 143 VKIGKNCFLGINSCVLPNLSLADDSILGG 171 (193)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred ceeeccccCCceeeEcCCeEECCCCEECC
Confidence 5666666663 566666666666666543
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=98.47 E-value=2.4e-07 Score=82.22 Aligned_cols=98 Identities=12% Similarity=0.211 Sum_probs=52.4
Q ss_pred ccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEEcce-----EEeCCccccchhHH-HHhh
Q 010874 392 RFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDT-----VMLGADYYQTESEI-ASLL 458 (498)
Q Consensus 392 ~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i~~s-----vi~~~~~~~~~~~~-~s~l 458 (498)
+|++.++|. .+.|. ++.||++|.|+ +|.|. +..||+++.++.++.+..+ ++.++......... ...+
T Consensus 14 ~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~i 93 (172)
T d1xhda_ 14 KIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHI 93 (172)
T ss_dssp EECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEE
T ss_pred EECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeeccccccc
Confidence 344444442 23332 57777777777 66663 3577888877777776553 22222111111111 1112
Q ss_pred cCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 459 AEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 459 ~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+++ +.||.++.|. ++.||++|.||++++|.+
T Consensus 94 ~~~---~~ig~~~~i~~gv~IG~~~~IgagsvV~~ 125 (172)
T d1xhda_ 94 KKD---ALIGMGSIILDGAEIGEGAFIGAGSLVSQ 125 (172)
T ss_dssp CTT---CEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred ccc---eEEecccEeeCCcEEcCcccccceEEEee
Confidence 223 5556555553 577777777777777764
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=98.32 E-value=1.2e-06 Score=83.23 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=13.3
Q ss_pred EEeCCCcEEee--------eEECCCCEECCCcEE
Q 010874 465 IGVGRNTKIRN--------CIIDKNVKIGKDVVI 490 (498)
Q Consensus 465 v~Ig~~~~i~~--------~iI~~~~~Ig~~~~i 490 (498)
+.||+++.|.. +.||+++.|..++.|
T Consensus 90 v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I 123 (262)
T d2jf2a1 90 NRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHI 123 (262)
T ss_dssp CEECTTCEEECCCTTTTSEEEECSSCEECTTCEE
T ss_pred eeecceEeccCccccCccceEECCCCEEeccccc
Confidence 45555555531 455555555444444
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=98.31 E-value=6.1e-07 Score=85.07 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=28.8
Q ss_pred CCCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEc
Q 010874 386 PFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK 438 (498)
Q Consensus 386 ~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~ 438 (498)
.|++++.|.|.++|+ +++|. +++||++++|+ +|.|. |++|+.+|+||+++.|.
T Consensus 2 ~Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~ 58 (259)
T d1j2za_ 2 KIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIF 58 (259)
T ss_dssp CBCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEEC
T ss_pred cCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccC
Confidence 456666666666663 35554 35555555555 45452 55555555555555553
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.31 E-value=7.5e-07 Score=79.95 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=24.9
Q ss_pred CCCCCccCCCeEec-Ceeee-ceEEcCCCEEC-ceEEeccEECCCCEEC
Q 010874 387 FYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLD 432 (498)
Q Consensus 387 i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig 432 (498)
+.+++.|+++++|+ ++.|. ++.||++|+|+ ++.|+++.||+++.|.
T Consensus 11 I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~IG~~~~I~ 59 (196)
T d1g97a1 11 IDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVIT 59 (196)
T ss_dssp ECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEESCEECTTCEEC
T ss_pred ECCCcEECCCCEECCCCEECCCcEECCCceEcCceEeeeeecccCcccc
Confidence 44444444444443 23333 56666666666 5666666666665554
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.23 E-value=1.2e-06 Score=77.49 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=51.3
Q ss_pred ccCCCeEec-Ceee-eceEEcCCCEEC-ceEEe----ccEECCCCEECCCCEEcceEE----eCCccccchhH--HHHhh
Q 010874 392 RFLPPTKID-NCRI-KDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVM----LGADYYQTESE--IASLL 458 (498)
Q Consensus 392 ~i~~~~~i~-~~~I-~~s~Ig~~~~I~-~~~v~----~siIg~~~~Ig~~~~i~~svi----~~~~~~~~~~~--~~s~l 458 (498)
.|++.+.|+ .+.| .++.||++|+|+ +|.|. ...|++++.++..+.+..+.. .+......... ....+
T Consensus 12 ~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 91 (173)
T d1v3wa_ 12 RIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKV 91 (173)
T ss_dssp EECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEE
T ss_pred EECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeeeeec
Confidence 444444442 2333 267788888887 66663 457888888888887754311 11111100000 02223
Q ss_pred cCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 459 AEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 459 ~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+++ +.||.+|.|. ++.||+++.||+++++..
T Consensus 92 g~~---~~ig~~~~i~~gv~Ig~~~vIgagsvV~~ 123 (173)
T d1v3wa_ 92 GNY---VIIGISSVILDGAKIGDHVIIGAGAVVPP 123 (173)
T ss_dssp CSS---EEECTTCEECTTCEECSSEEECTTCEECT
T ss_pred CCc---ccccceeeecCCEEEcceeEEcCCcEEeC
Confidence 333 4555555543 456666666666666643
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=1.7e-06 Score=77.49 Aligned_cols=90 Identities=22% Similarity=0.377 Sum_probs=51.3
Q ss_pred CccCCCeEecCeee-eceEEcCCCEEC-ceEEe---ccEECCCCEECCCCEEcceEEeCCccccchhHHHH--hhcCCcc
Q 010874 391 PRFLPPTKIDNCRI-KDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVMLGADYYQTESEIAS--LLAEGKV 463 (498)
Q Consensus 391 ~~i~~~~~i~~~~I-~~s~Ig~~~~I~-~~~v~---~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s--~l~~~~~ 463 (498)
+.+.+|.+.+ + .+..||++|+|+ +|+|. ...||++|.|+++|.|.......+ ...... ..+.
T Consensus 59 ~~i~~p~~~~---~G~ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~-----~~~~~~~~~~~~--- 127 (182)
T d1ocxa_ 59 AYIEPTFRCD---YGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPID-----PVARNSGAELGK--- 127 (182)
T ss_dssp EEECSCEEES---SSTTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSS-----HHHHTTTCBEEC---
T ss_pred eEEECCEEEE---eccceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccc-----eeeeeccceEcc---
Confidence 3456665542 1 156666666666 66653 237999999999998876543322 222211 1222
Q ss_pred cEEeCCCcEEe-eeEECCCCEECCCcEEe
Q 010874 464 PIGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 464 ~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
|+.||++++|+ +|+|.++++||++++|.
T Consensus 128 ~v~Ig~~~~iG~~~~I~~Gv~IG~~~vIg 156 (182)
T d1ocxa_ 128 PVTIGNNVWIGGRAVINPGVTIGDNVVVA 156 (182)
T ss_dssp CEEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred eeEECceEeeCceeeccCcEEECCCCEEC
Confidence 37888888885 55555555555555443
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.20 E-value=2.1e-06 Score=76.90 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=8.7
Q ss_pred cEECCCCEECCCCEEcceEE
Q 010874 423 SIVGERSRLDYGVELKDTVM 442 (498)
Q Consensus 423 siIg~~~~Ig~~~~i~~svi 442 (498)
+.||++|+|+++++|+++.|
T Consensus 33 v~IG~~~~I~~~~~i~~~~I 52 (196)
T d1g97a1 33 TKIGAETVLTNGTYVVDSTI 52 (196)
T ss_dssp CEECTTCEECTTCEEESCEE
T ss_pred cEECCCceEcCceEeeeeec
Confidence 34444444444444444433
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.19 E-value=2.6e-06 Score=79.71 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=15.2
Q ss_pred eEEcCCCEECceEEe-ccEECCCCEECCCCEEc
Q 010874 407 AIISHGCFLRECTVE-HSIVGERSRLDYGVELK 438 (498)
Q Consensus 407 s~Ig~~~~I~~~~v~-~siIg~~~~Ig~~~~i~ 438 (498)
++|++|+++-.+.|. .+.||++|.|..++.|+
T Consensus 115 ayI~~~vVlmps~VNigA~ig~~~midt~a~vg 147 (274)
T d3tdta_ 115 AFIARNTVLMPSYVNIGAYVDEGTMVDTWATVG 147 (274)
T ss_dssp CEECTTCEECSEEECTTCEECTTCEECTTEEEC
T ss_pred cEECCCcEEeeeEeccccEEcCCcEEcccceec
Confidence 444444444444442 44555555555555554
|
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=98.04 E-value=6.2e-05 Score=77.11 Aligned_cols=216 Identities=18% Similarity=0.252 Sum_probs=128.2
Q ss_pred CceEEEEEeCCCCCcccCCccCCCccceec---CCcchhHHHHHHHHHhc----------CC-CeEEEEeccC-chhHHH
Q 010874 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCINS----------GI-NKIFVLTQFN-SASLNR 157 (498)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PK~LlpI---~G~~pLId~~L~~l~~s----------Gi-~~I~Vv~~~~-~~~l~~ 157 (498)
.++.+|+||||.||||. ..-||.++|| .|+ .+++..++.+... ++ =.++|.|++. .+.+.+
T Consensus 101 gkvavvllaGG~GTRLG---~~~pK~~~~v~~~~~k-sllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~ 176 (501)
T d1jv1a_ 101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (501)
T ss_dssp TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CCEEEEEECCCccccCC---CCCCceeeeeccCCCC-cHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHH
Confidence 56999999999999996 5789999998 477 8999988886542 22 2477777754 567888
Q ss_pred HHHh-hccCCCCc----CCCCeEEEecccC-CCCCC---CCccccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCceee
Q 010874 158 HIAR-TYFGNGTN----FGDGFVEVLAATQ-TPGES---GKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLY 226 (498)
Q Consensus 158 hl~~-~~~~~~~~----~~~~~V~v~~~~q-~~~~~---~~~~~~Gta~Alr~~~~--~i~~~~~~~~e~~Lvl~GD~l~ 226 (498)
++.+ .||+.... |..+.+-.+..+. -..+. -...+.|.|+....... .+++......+++.+.+-|.+.
T Consensus 177 ~l~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l 256 (501)
T d1jv1a_ 177 FFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNIL 256 (501)
T ss_dssp HHHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTT
T ss_pred HHHhccccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCcc
Confidence 8865 34553211 1111222221100 00000 00024688777766543 4555545677999999999854
Q ss_pred -ecCHHHHHHHHHHcCCCeEEEEEecCCCCCCCceEEE-ECCCCCEEEEEeCCCccccccccccccccCCCccccccCCc
Q 010874 227 -RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPY 304 (498)
Q Consensus 227 -~~dl~~ll~~h~~~~ad~tv~~~~~~~~~~~~~g~v~-~d~~grV~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (498)
..---.++-.|...++++.+-+.+...+. ..-|++. .|..-+|+.+.|-|...... .-+.+- ....
T Consensus 257 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-e~~G~l~~~dg~~~vvEysel~~~~~~~--~~~~g~---------l~f~ 324 (501)
T d1jv1a_ 257 VKVADPRFIGFCIQKGADCGAKVVEKTNPT-EPVGVVCRVDGVYQVVEYSEISLATAQK--RSSDGR---------LLFN 324 (501)
T ss_dssp CCTTCHHHHHHHHHTTCSEEEEEEECCSTT-CSCCEEEEETTEEEEECGGGSCHHHHHC--BCTTSS---------BSSC
T ss_pred ccccCHHHHHHHHhcccceeEEEEEcCCCC-cccceEEEECCeEEEEEeccCCHHHHhh--ccCCCc---------cccc
Confidence 33224578889999999988887754422 2345443 33222334433333221100 000000 0124
Q ss_pred ceeeeEEEEcHHHHHHHHHh
Q 010874 305 VASMGVYVFKKDVLFKLLRW 324 (498)
Q Consensus 305 l~~~GIYif~~~vL~~ll~~ 324 (498)
..+++.++|+-++|.++++.
T Consensus 325 ~~Ni~~~~fsl~fl~~~~~~ 344 (501)
T d1jv1a_ 325 AGNIANHFFTVPFLRDVVNV 344 (501)
T ss_dssp EEEEEEEEEEHHHHHHHHHT
T ss_pred ccceeheeeEHHHHHHHHHh
Confidence 57899999999999988753
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=97.96 E-value=7.8e-06 Score=72.12 Aligned_cols=79 Identities=16% Similarity=0.298 Sum_probs=51.1
Q ss_pred eEEcCCCEEC-ceEEec-----cEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcccEEeCCCcEEe-eeEEC
Q 010874 407 AIISHGCFLR-ECTVEH-----SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIID 479 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~~-----siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~~v~Ig~~~~i~-~~iI~ 479 (498)
..||++|.++ ++.+.. ++||+++.++..+.+.++.+.++..+++. +.+..+ +.||++|.|. +|+|-
T Consensus 52 i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~i~~~~~ig~~----~~i~~g---v~IG~~~~IgagsvV~ 124 (172)
T d1xhda_ 52 TIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMG----SIILDG---AEIGEGAFIGAGSLVS 124 (172)
T ss_dssp EEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEECTT----CEECTT---CEECTTCEECTTCEEC
T ss_pred ccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecccccccccceEEecc----cEeeCC---cEEcCcccccceEEEe
Confidence 4566666666 454432 57778888888888887777766544433 244455 5677777775 67777
Q ss_pred CCCEECCCcEEeC
Q 010874 480 KNVKIGKDVVIVN 492 (498)
Q Consensus 480 ~~~~Ig~~~~i~~ 492 (498)
++..|++++++.+
T Consensus 125 ~~~~i~~~~v~~G 137 (172)
T d1xhda_ 125 QGKKIPPNTLAFG 137 (172)
T ss_dssp TTCEECTTEEEEE
T ss_pred eCeEECCCeEEEe
Confidence 7777777777654
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=1.3e-05 Score=72.14 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=20.4
Q ss_pred eEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCC
Q 010874 407 AIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGA 445 (498)
Q Consensus 407 s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~ 445 (498)
..||++|+|+ +|.|+ +++||++|+|+++|.|.++.+..+
T Consensus 15 v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~ 55 (201)
T d2oi6a1 15 LTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDD 55 (201)
T ss_dssp EEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTT
T ss_pred EEECCCCEECCCCEECCceEECCCcEECCCEEEeeeccCCc
Confidence 3444555554 44443 455555665555555555555443
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=1.2e-05 Score=71.79 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=49.1
Q ss_pred CCccCCCeEec-Ceeee---ceEEcCCCEEC-ceEEe-ccEECCCCEECCCCEEcceEEeCCccccchhHHHHhhcCCcc
Q 010874 390 SPRFLPPTKID-NCRIK---DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV 463 (498)
Q Consensus 390 ~~~i~~~~~i~-~~~I~---~s~Ig~~~~I~-~~~v~-~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~~s~l~~~~~ 463 (498)
...|++.++|. +|.|. ...||++|.|+ ++.|. ++.+++.+....++.+...+..+++
T Consensus 72 ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~----------------- 134 (182)
T d1ocxa_ 72 NIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNN----------------- 134 (182)
T ss_dssp TEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTT-----------------
T ss_pred ceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECce-----------------
Confidence 34455555552 45553 34677777777 66664 3344554545555555444433332
Q ss_pred cEEeCCCcEEe-eeEECCCCEECCCcEEe
Q 010874 464 PIGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 464 ~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
+.||.+|.|. ++.||+++.||+|+++.
T Consensus 135 -~~iG~~~~I~~Gv~IG~~~vIgagsvV~ 162 (182)
T d1ocxa_ 135 -VWIGGRAVINPGVTIGDNVVVASGAVVT 162 (182)
T ss_dssp -CEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred -EeeCceeeccCcEEECCCCEECCCCEEc
Confidence 6777777764 57777777777777774
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=97.81 E-value=9.5e-06 Score=73.73 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=16.6
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEe
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 491 (498)
+.||++|+|+ +|+|.++++||++++|.
T Consensus 114 v~IGd~v~IG~~~~I~~gv~IG~~~~Ig 141 (203)
T d1mr7a_ 114 TIIGNDVWIGKDVVIMPGVKIGDGAIVA 141 (203)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEEC
T ss_pred eEECCEEEECCceeEEeEEEEcCCCEEe
Confidence 7888888886 45555555555555444
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=3.6e-05 Score=69.66 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=17.5
Q ss_pred CCccCCCeEec-Ceeee---ceEEcCCCEEC-ceEEe
Q 010874 390 SPRFLPPTKID-NCRIK---DAIISHGCFLR-ECTVE 421 (498)
Q Consensus 390 ~~~i~~~~~i~-~~~I~---~s~Ig~~~~I~-~~~v~ 421 (498)
.+.|+..++|. +|.|. .+.||++|.|+ ++.|.
T Consensus 74 nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~ 110 (200)
T d1krra_ 74 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLS 110 (200)
T ss_dssp TEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEE
T ss_pred ccEECCccEECceEEEecCCCcEeCCCccccceeEEe
Confidence 34455555552 45552 45667777776 55553
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=97.78 E-value=1.9e-05 Score=76.71 Aligned_cols=70 Identities=9% Similarity=0.271 Sum_probs=44.7
Q ss_pred cCCCCCCCCCCccCCCeEec-Ceeee-ceEEcCCCEECceEE-eccEECCCCEECCCCEEcceEEeCCccccc
Q 010874 381 YDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLRECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQT 450 (498)
Q Consensus 381 ~~~~~~i~~~~~i~~~~~i~-~~~I~-~s~Ig~~~~I~~~~v-~~siIg~~~~Ig~~~~i~~svi~~~~~~~~ 450 (498)
+|+.+.++.++++.+.++|. .+.|. ++.||++|.|+++.| .++.|+++|+|+.++.+.++.+.++..+..
T Consensus 60 ~~~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~~~~i~~~~i~g~~~v~~ 132 (320)
T d2f9ca1 60 YDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLN 132 (320)
T ss_dssp CSTTCEECSSCEECTTCEECSSCEECSSCEECSSCEESSCEECSSEEECSSCEEESCEECSSEEECSSCEEES
T ss_pred ECCCcEECCCCEECCCCEECCCcEECCCcEECCcEEECCcEEEcCcEEeeeeeecCccEEeeeEEECCeEEeC
Confidence 34455666666666666664 35553 677777777776666 367777777777777777666666544433
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.72 E-value=3e-05 Score=69.57 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=16.9
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 493 (498)
+.||++++|. ++.|.++++||+++.|...
T Consensus 144 ~~Ig~~v~iG~~~~I~~~v~IG~~s~Igag 173 (201)
T d2oi6a1 144 TIIGDDVFVGSDTQLVAPVTVGKGATIAAG 173 (201)
T ss_dssp EEECTTCEECTTCEEESSEEECTTCEECTT
T ss_pred cEeCCcEEEeEeeeEcCCcEECCCCEECCC
Confidence 5566666664 5566666666666666543
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.63 E-value=4.1e-05 Score=67.26 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=16.7
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+.||++|.|. +|+|.++..|++++++.+
T Consensus 107 v~Ig~~~vIgagsvV~~~~~i~~~~iv~G 135 (173)
T d1v3wa_ 107 AKIGDHVIIGAGAVVPPNKEIPDYSLVLG 135 (173)
T ss_dssp CEECSSEEECTTCEECTTCEECTTEEEEE
T ss_pred EEEcceeEEcCCcEEeCCeEeCCCCEEcC
Confidence 5566666554 566666666666666543
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=97.59 E-value=4.5e-05 Score=71.04 Aligned_cols=28 Identities=36% Similarity=0.569 Sum_probs=18.9
Q ss_pred EEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~ 492 (498)
|.||.|++| ++..||++++||+|+++..
T Consensus 196 v~IGaga~Ilg~v~IG~~a~IgAgsvV~k 224 (241)
T d1ssqa_ 196 VMIGAGAKILGNIEVGKYAKIGANSVVLN 224 (241)
T ss_dssp CEECTTCEEESSCEECTTCEECTTCEECS
T ss_pred eEECCCCEEcCCcEECCCCEECCCCEECC
Confidence 566666644 4667777777777777754
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.54 E-value=5.7e-05 Score=68.69 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=16.9
Q ss_pred EEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 465 v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
+.||++|.|+ +|+|.++++||+|++|..
T Consensus 109 v~Igd~v~IG~~s~I~~gv~IG~~~vIga 137 (208)
T d1xata_ 109 TLIGHEVWIGTEAMFMPGVRVGHGAIIGS 137 (208)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred EEEcCCeEECccccccCCeEeCCCCEEeC
Confidence 6777777775 555555555555555544
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=97.50 E-value=0.00013 Score=67.91 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=26.6
Q ss_pred CCCCCccCCCeEec---Ceeee-ceEEcCCCEEC-ceEE---------eccEECCCCEECCCCEEc
Q 010874 387 FYTSPRFLPPTKID---NCRIK-DAIISHGCFLR-ECTV---------EHSIVGERSRLDYGVELK 438 (498)
Q Consensus 387 i~~~~~i~~~~~i~---~~~I~-~s~Ig~~~~I~-~~~v---------~~siIg~~~~Ig~~~~i~ 438 (498)
+++.+.|+++..|+ +..|. .+.||++|.|. ++++ .+.+||++|.||.||.|-
T Consensus 140 I~~~~~Ig~g~~i~h~~givig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Il 205 (241)
T d1ssqa_ 140 IHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKIL 205 (241)
T ss_dssp ECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEE
T ss_pred cccCCEEccCcccCccceEEEeccceecCCeeecccccccccccCCCCCCCccCCCeEECCCCEEc
Confidence 44455555555552 22232 35555555554 4433 135666666666666543
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=96.84 E-value=0.00029 Score=63.56 Aligned_cols=34 Identities=15% Similarity=0.387 Sum_probs=28.9
Q ss_pred HhhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 456 SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 456 s~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
..++++ |.||.+|.|. ++.||++|.||+++++..
T Consensus 114 v~IGd~---v~IG~~~~I~~gv~IG~~~~IgagSvV~k 148 (203)
T d1mr7a_ 114 TIIGND---VWIGKDVVIMPGVKIGDGAIVAANSVVVK 148 (203)
T ss_dssp EEECSS---CEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred eEECCE---EEECCceeEEeEEEEcCCCEEecCeEEee
Confidence 356777 8999999885 799999999999999853
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=96.72 E-value=0.0014 Score=63.07 Aligned_cols=103 Identities=12% Similarity=0.183 Sum_probs=55.2
Q ss_pred CCccCCCeEe-cCeeee-ceEEcCCCEEC-ceEEeccEECCCCEECCCCEEcceEEeCCccccchhHH---HHhhcC---
Q 010874 390 SPRFLPPTKI-DNCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI---ASLLAE--- 460 (498)
Q Consensus 390 ~~~i~~~~~i-~~~~I~-~s~Ig~~~~I~-~~~v~~siIg~~~~Ig~~~~i~~svi~~~~~~~~~~~~---~s~l~~--- 460 (498)
.+++.+.+.| ++++|. ++.|+.++.|+ ++.|.++.|..+++|+.+|+|.++.+.++..+.....+ ..+.+.
T Consensus 63 nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~~~~i~~~~i~g~~~v~~~a~i~g~~~~ 142 (320)
T d2f9ca1 63 NAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGL 142 (320)
T ss_dssp TCEECSSCEECTTCEECSSCEECSSCEECSSCEESSCEECSSEEECSSCEEESCEECSSEEECSSCEEESSCEECCCCCC
T ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCcEEECCcEEEcCcEEeeeeeecCccEEeeeEEECCeEEeCCcEEECCCce
Confidence 4555555555 235553 45555555555 45555555666666666666655555544322222211 000000
Q ss_pred ---CcccEEeCCCcEEeeeEECCCCEECCCcEEeC
Q 010874 461 ---GKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 461 ---~~~~v~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 492 (498)
..-...+++.+++.++.|..++.|+.++.+.+
T Consensus 143 ~~~~~~~~~i~~~~~~~~~~I~~~~~Iggna~i~~ 177 (320)
T d2f9ca1 143 THEHAQILQIYDRATVNHSRIVHQVQLYGNATITH 177 (320)
T ss_dssp SSSTTCCCEECSSCEEESCEECSSCEECSSCEEES
T ss_pred eecccCcceecccceeeeeEEeeeeeeCCCccccc
Confidence 00013566677777888888888988888864
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.68 E-value=0.0024 Score=57.47 Aligned_cols=33 Identities=12% Similarity=0.314 Sum_probs=27.2
Q ss_pred hhcCCcccEEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 010874 457 LLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (498)
Q Consensus 457 ~l~~~~~~v~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 492 (498)
.++++ |.||.+|.|. ++.||++|.||+++++..
T Consensus 110 ~Igd~---v~IG~~s~I~~gv~IG~~~vIgagSvVtk 143 (208)
T d1xata_ 110 LIGHE---VWIGTEAMFMPGVRVGHGAIIGSRALVTG 143 (208)
T ss_dssp EECTT---CEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred EEcCC---eEECccccccCCeEeCCCCEEeCceEEee
Confidence 44555 8999999886 699999999999999864
|