Citrus Sinensis ID: 010904
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 497 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SL56 | 493 | Putative glycerol-3-phosp | yes | no | 0.955 | 0.963 | 0.721 | 0.0 | |
| Q9C5L3 | 523 | Putative glycerol-3-phosp | no | no | 0.969 | 0.921 | 0.548 | 1e-149 | |
| Q9SA71 | 510 | Putative glycerol-3-phosp | no | no | 0.939 | 0.915 | 0.556 | 1e-149 | |
| O23596 | 544 | Putative glycerol-3-phosp | no | no | 0.947 | 0.865 | 0.519 | 1e-143 | |
| Q9SB41 | 504 | Putative glycerol-3-phosp | no | no | 0.921 | 0.908 | 0.550 | 1e-143 | |
| Q7SY29 | 494 | Sugar phosphate exchanger | yes | no | 0.931 | 0.937 | 0.474 | 1e-117 | |
| Q9WU81 | 501 | Sugar phosphate exchanger | yes | no | 0.885 | 0.878 | 0.487 | 1e-111 | |
| Q58CV5 | 491 | Sugar phosphate exchanger | no | no | 0.895 | 0.906 | 0.479 | 1e-111 | |
| Q8TED4 | 501 | Sugar phosphate exchanger | yes | no | 0.921 | 0.914 | 0.475 | 1e-109 | |
| Q8AVC3 | 499 | Sugar phosphate exchanger | N/A | no | 0.933 | 0.929 | 0.455 | 1e-107 |
| >sp|Q9SL56|GLPT5_ARATH Putative glycerol-3-phosphate transporter 5 OS=Arabidopsis thaliana GN=At2g13100 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/482 (72%), Positives = 396/482 (82%), Gaps = 7/482 (1%)
Query: 5 QDQETVSLAPGLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPT 64
V LAP +LFP L P+KT FHQI L+ITF AYASFHASRKPPSIVKSVLGP
Sbjct: 1 MQSRIVGLAPAFSLFPNLNTPHKTFTFHQILVLIITFTAYASFHASRKPPSIVKSVLGP- 59
Query: 65 FDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGM 124
N S D GWAPFNG GT RLGELDLAFL+SY++GMYFAGH+GD IDLR FLVFGM
Sbjct: 60 -PSLNSSSIDNGWAPFNGTQGTKRLGELDLAFLSSYALGMYFAGHLGDRIDLRYFLVFGM 118
Query: 125 MGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMG 184
MGSG+ T++FGL YW++VH L +++ VQI CGLFQSIGWPCVV+V+GNW GK KRGLIMG
Sbjct: 119 MGSGILTLVFGLGYWMNVHTLGFYMSVQIVCGLFQSIGWPCVVSVVGNWCGKEKRGLIMG 178
Query: 185 VWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPG 244
+WNSHTS+GNI+GSV+AS VL+FGWGWSFVLPG LV+ GV VF+FLVV P DLGFE G
Sbjct: 179 LWNSHTSVGNILGSVIASSVLDFGWGWSFVLPGVLVLVSGVVVFMFLVVSPNDLGFEELG 238
Query: 245 KEVELM-----NVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSK 299
KE+E+ NVE + E +L S AIGFLEAW+LP VAP+AFCLFFSK
Sbjct: 239 KEIEIEMSLGENVEESLRKHEAEGAVLLENVDDSSFAIGFLEAWRLPGVAPYAFCLFFSK 298
Query: 300 LVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVT 359
LVAYTFLYWLP+Y+RHTAVAGV+LSHKTAGILST+FD+GGV GGI AG ISD I+ARA+T
Sbjct: 299 LVAYTFLYWLPYYLRHTAVAGVNLSHKTAGILSTVFDVGGVLGGISAGFISDKIKARALT 358
Query: 360 SVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKG 419
S+ FL LSIPAL++YR YGS+SM NI LMF+SGLLVNGPY+LITTAVAADLGTQD IKG
Sbjct: 359 SITFLALSIPALIMYRVYGSVSMFINIVLMFISGLLVNGPYALITTAVAADLGTQDSIKG 418
Query: 420 NSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRIVKAE 479
N RALATVTAIIDGTGSVGAALGPLLAGYIS+RGWNSVFFMLIVSI FAG+FL+R+ K+E
Sbjct: 419 NGRALATVTAIIDGTGSVGAALGPLLAGYISSRGWNSVFFMLIVSIFFAGLFLVRLAKSE 478
Query: 480 IR 481
I
Sbjct: 479 IN 480
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C5L3|GLPT1_ARATH Putative glycerol-3-phosphate transporter 1 OS=Arabidopsis thaliana GN=At3g47420 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 528 bits (1361), Expect = e-149, Method: Compositional matrix adjust.
Identities = 275/501 (54%), Positives = 359/501 (71%), Gaps = 19/501 (3%)
Query: 5 QDQETVSLAP-GLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGP 63
Q + + P G+ +K + +Q L++TF AYAS+HA+RK SIVKS L P
Sbjct: 6 QSEPEMEKKPIGIRFLERIKGSKLSYSAYQAIVLIVTFLAYASYHAARKTTSIVKSALDP 65
Query: 64 TFDGSNLRS-------------NDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHV 110
+ L S + GWAPFNGPDGT LGE+D+AFL Y+ GMYFAGH+
Sbjct: 66 QSPDTGLNSLLLRFTSFGSSVKEEGGWAPFNGPDGTVLLGEIDVAFLAVYAFGMYFAGHL 125
Query: 111 GDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVL 170
GD ++LR+FL GM+G+GLFT +FG+ YW ++H YF+ +Q+ GLFQS GWP VVAV+
Sbjct: 126 GDRMNLRIFLTVGMIGTGLFTSLFGVGYWGNIHSFYYFLIMQMLAGLFQSSGWPSVVAVV 185
Query: 171 GNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLF 230
GNWF K KRGLIMG+WN+HTS+GNI GS++A+ +L +GWGWSFV+PG +++ +G+ + F
Sbjct: 186 GNWFNKKKRGLIMGIWNAHTSVGNITGSLIAAAMLRYGWGWSFVVPGVIIVVIGLVNYAF 245
Query: 231 LVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSS--GSLQAIGFLEAWKLPRV 288
L V PE++G E EV + E NE + L S S +A+GF+EAW++P V
Sbjct: 246 LPVSPENVGAER--DEVLDSSSEKIGNSVNEPLLLSSSDSETDDKKRAVGFIEAWRIPGV 303
Query: 289 APFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGL 348
APFA CLFF+KLVAYTFLYWLPFY+ HTA+ G +LS +TAG LST+FD+GGV GGI+AG
Sbjct: 304 APFALCLFFAKLVAYTFLYWLPFYVSHTAIEGEYLSDETAGNLSTMFDVGGVVGGIMAGY 363
Query: 349 ISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVA 408
ISD I ARA+T+ +F+ SIPAL YR+YG +S++ N LMFL+G+LVNGPY+LITTAV+
Sbjct: 364 ISDRIGARAITAASFMYCSIPALFFYRSYGHVSLLANASLMFLTGMLVNGPYALITTAVS 423
Query: 409 ADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRG-WNSVFFMLIVSILF 467
ADLGT +KGNSRALATVTAIIDGTGSVGAA+GPLL GYIS+RG W +VF ML+ +
Sbjct: 424 ADLGTHSSLKGNSRALATVTAIIDGTGSVGAAVGPLLTGYISSRGSWTAVFTMLMGAAFV 483
Query: 468 AGMFLIRIVKAEIREKLNEGK 488
AG+ L R+V AE+ EK+ E +
Sbjct: 484 AGLLLTRLVMAEVAEKIAESR 504
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SA71|GLPT3_ARATH Putative glycerol-3-phosphate transporter 3 OS=Arabidopsis thaliana GN=At1g30560 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 528 bits (1359), Expect = e-149, Method: Compositional matrix adjust.
Identities = 264/474 (55%), Positives = 348/474 (73%), Gaps = 7/474 (1%)
Query: 14 PGLNLFPTLKPPNKTLIFHQITALV--ITFFAYASFHASRKPPSIVKSVLGPTFDGSNLR 71
PG++ + K L F Q A+V +TF AY +FHA+RKP SIVK L G
Sbjct: 17 PGIHFLERFRRSGK-LSFKQYQAMVFVLTFIAYIAFHATRKPNSIVKGTLSEQPTGHFKG 75
Query: 72 SNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFT 131
++ GWAPF+GPDGT LG++DLAFL+ Y+VGM+ AGH+GD +DLR FL GM+G+G+ T
Sbjct: 76 ADKGGWAPFDGPDGTALLGQIDLAFLSVYAVGMFVAGHLGDRLDLRTFLTIGMVGTGVCT 135
Query: 132 IIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTS 191
+FG+A+W ++H YF+ +Q G FQSIGWPCVVAVLGNWF K +RG+IMGVW++HTS
Sbjct: 136 ALFGVAFWANIHAFYYFLAIQTLAGWFQSIGWPCVVAVLGNWFDKKRRGVIMGVWSAHTS 195
Query: 192 IGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMN 251
+GNIIG+++A+G+L+FGWGWSFV P L+ F+G+ V+LFL V P + E G EV+
Sbjct: 196 LGNIIGTLIATGLLKFGWGWSFVGPALLITFLGIVVYLFLPVNPHAVEAERDGSEVD-ST 254
Query: 252 VENGDKVENEEVGLLESGSSG-SLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLP 310
+ GD + E L S+G +A+GFL AWK+P VAPFAFCLFF+KLV+YTFLYWLP
Sbjct: 255 MRLGDTIT--ESFLSSRTSTGFDRRAVGFLAAWKIPGVAPFAFCLFFTKLVSYTFLYWLP 312
Query: 311 FYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPA 370
FY+ T + G LS +T+G LST+FD+GGV GGILAG SD ++ RA+T+ F+ L+IPA
Sbjct: 313 FYVSQTEIGGEQLSQETSGNLSTLFDVGGVVGGILAGYFSDQLDGRAITAGGFIYLTIPA 372
Query: 371 LVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAI 430
L LYR YG +SM NI LMF++GL VNGPY+LITTAVAADLGT +KGN+RALATVTAI
Sbjct: 373 LFLYRIYGHVSMTINIILMFVAGLFVNGPYALITTAVAADLGTHKSLKGNARALATVTAI 432
Query: 431 IDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRIVKAEIREKL 484
IDGTGSVGAA+GP+L GYI+ W++VF+ML+ + L +G+ L ++ E++ L
Sbjct: 433 IDGTGSVGAAIGPVLTGYIAAISWDAVFYMLMTAALISGLLLTTLIIEEVKTLL 486
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23596|GLPT4_ARATH Putative glycerol-3-phosphate transporter 4 OS=Arabidopsis thaliana GN=At4g17550 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 508 bits (1309), Expect = e-143, Method: Compositional matrix adjust.
Identities = 268/516 (51%), Positives = 343/516 (66%), Gaps = 45/516 (8%)
Query: 14 PGLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPT--------- 64
PG+ L ++ N + + L ITF AYA +HASRKP SIVKSVL P
Sbjct: 11 PGIALLRRVRGRNWSPKTFRYAILFITFIAYACYHASRKPSSIVKSVLHPDSSTKPPQEH 70
Query: 65 ---------------------FDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVG 103
D L GW PFNG DGT RLGE+D+AFL YS+G
Sbjct: 71 NSDKIYPWPMGNVFVKREIGDIDEVLLHRKSKGWEPFNGKDGTSRLGEIDVAFLACYSIG 130
Query: 104 MYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGW 163
MY AGH+GD++DLRLFL +GM+GSG F +FG+ Y+ ++H +F+ +Q+ GLFQ+ GW
Sbjct: 131 MYVAGHLGDSLDLRLFLTWGMIGSGFFVGLFGMGYFWNIHAFWFFLVMQMAAGLFQATGW 190
Query: 164 PCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFV 223
P VVAV+GNWFGK KRGLIMG+WN+HTS+GNI GS++A+GVLE+GWGWSF+ PGF++
Sbjct: 191 PSVVAVVGNWFGKRKRGLIMGIWNAHTSVGNICGSLIAAGVLEYGWGWSFIAPGFVMSLG 250
Query: 224 GVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSS------------ 271
GV V+LFL PED+GF D E EE + G+
Sbjct: 251 GVLVYLFLAAYPEDVGFPDINSNSGKFIKRKRDVEEEEEEVEEDLGTDVEGDGEGSSGSG 310
Query: 272 ---GSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTA 328
+ +++G L+A +P V PFA CLFFSKLVAYTFLYWLPFY+ T + G ++S KTA
Sbjct: 311 SGYENKRSVGLLQACMIPGVIPFALCLFFSKLVAYTFLYWLPFYLSQTTIGGEYVSVKTA 370
Query: 329 GILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPL 388
G LST+FD+GG+ GGIL G ISD +ARA T+ AF+ +IPA+++Y +YG +S NI L
Sbjct: 371 GNLSTLFDVGGIVGGILCGYISDKFKARATTAAAFMYAAIPAMLVYHSYGGVSQTVNILL 430
Query: 389 MFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGY 448
M ++GL VNGPY+LITTAV+ADLGT ++G+SRALATVTAIIDGTGS GAALGPLL G+
Sbjct: 431 MMVAGLFVNGPYALITTAVSADLGTHKSLQGDSRALATVTAIIDGTGSAGAALGPLLTGF 490
Query: 449 ISTRGWNSVFFMLIVSILFAGMFLIRIVKAEIREKL 484
+ST GW +VF+ML+V L AG+ L R+V AEIREKL
Sbjct: 491 LSTLGWQAVFYMLVVGALCAGLLLTRLVIAEIREKL 526
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SB41|GLPT2_ARATH Putative glycerol-3-phosphate transporter 2 OS=Arabidopsis thaliana GN=At4g25220 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 508 bits (1307), Expect = e-143, Method: Compositional matrix adjust.
Identities = 261/474 (55%), Positives = 348/474 (73%), Gaps = 16/474 (3%)
Query: 15 GLNLFPTLKPPNKTLIFHQITALV--ITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRS 72
G+ K + L F Q ALV +TF AY +FHA+RKP SIVK L + +
Sbjct: 18 GIQFLEKFKRSGR-LSFKQYQALVFILTFVAYIAFHAARKPNSIVKGTLSAS-------T 69
Query: 73 NDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTI 132
+ GWAPF+GPDGT LG++DLAFL+ Y+VGM+ AGH+GD +DLR FL GM+G+GLFT
Sbjct: 70 IEGGWAPFDGPDGTALLGQIDLAFLSVYAVGMFVAGHLGDRLDLRTFLTIGMIGTGLFTA 129
Query: 133 IFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSI 192
+FG+A+W + H YF+ VQ+ GLFQSIGWPC+VAVLGNWF K +RG+IMGVW++HTS+
Sbjct: 130 LFGVAFWANFHSFYYFLAVQVMAGLFQSIGWPCIVAVLGNWFDKKRRGMIMGVWSAHTSL 189
Query: 193 GNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNV 252
GNI GS++ASG+L +GWGWSF+ P FL+ F+G+ V+LFL V P + E G E++ +
Sbjct: 190 GNIAGSLIASGLLRYGWGWSFLGPAFLMTFLGIVVYLFLPVNPPTVEAERDGTEID-STM 248
Query: 253 ENGDKVENEEVGLLESGSSGSL--QAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLP 310
GD + LLES S +A+GF+ AWK+P VAPFAFCLFF+KLV+YTFLYWLP
Sbjct: 249 RLGDTITES---LLESRMSTGFDRKAVGFMAAWKIPGVAPFAFCLFFTKLVSYTFLYWLP 305
Query: 311 FYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPA 370
FY+ H + G +LS +T+G LSTIFD+GGV GG+LAG ISD + RA+T+ F+ L+IPA
Sbjct: 306 FYVSHNMIGGEYLSEETSGNLSTIFDVGGVVGGVLAGYISDQLNGRAITAAGFMYLAIPA 365
Query: 371 LVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAI 430
L LYR +G IS+ N+ LMF SG+ + GP++LITTAV+ADLGT +KGN+RALATV+AI
Sbjct: 366 LFLYRVFGHISLTINVILMFTSGVFIIGPFALITTAVSADLGTHKSLKGNARALATVSAI 425
Query: 431 IDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRIVKAEIREKL 484
IDGTGSVGAA+GP+L GYIS W++VF+ML+ + L +G+ L +++ AE++ L
Sbjct: 426 IDGTGSVGAAIGPVLTGYISAISWDAVFYMLMTAALISGLLLTKLIIAEVKALL 479
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7SY29|SPX2_DANRE Sugar phosphate exchanger 2 OS=Danio rerio GN=slc37a2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/485 (47%), Positives = 305/485 (62%), Gaps = 22/485 (4%)
Query: 11 SLAPGLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGS-- 68
SLAPG+ L + + +++ + L +TF Y S+H SRKP SIVKS L
Sbjct: 3 SLAPGIKLITSFSRDS----WYRFSILFLTFVFYTSYHLSRKPISIVKSQLHRNCSNVVH 58
Query: 69 ----NLRSNDP--GWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVF 122
N+ ND W PF+G + + G LD FL +Y+VGM+F+G G+ + LR +L
Sbjct: 59 PANLNITDNDTWCDWVPFDGKNYQNLFGVLDNCFLVAYAVGMFFSGIFGERLPLRYYLST 118
Query: 123 GMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLI 182
GM+ SGLFT +FGL ++ +H L Y+ VQ GL Q+ GWP VVA +GNWFGK KRG I
Sbjct: 119 GMLLSGLFTALFGLGFYWQIHSLWYYCLVQALNGLVQTTGWPAVVACVGNWFGKGKRGFI 178
Query: 183 MGVWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFEL 242
MGVWNSHTS+GNI+GS++A + WG SF++PG ++ GV FLFLV RPED+
Sbjct: 179 MGVWNSHTSVGNILGSLIAGVYVSSAWGLSFIVPGIIIASTGVICFLFLVERPEDVNCTA 238
Query: 243 PG------KEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLF 296
P +E L N +++ N +AI F A ++P V F+ CL
Sbjct: 239 PQHHERVEEEPLLRNSSTNEEIFNSHTSTAVEPVEDHSEAISFCGALRIPGVVEFSLCLL 298
Query: 297 FSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEAR 356
F+KLV+YTFLYWLP YI + A H K AG LST+FD+GG+ GGI+AGL+SD R
Sbjct: 299 FAKLVSYTFLYWLPLYIANVA----HFDPKKAGDLSTLFDVGGILGGIVAGLVSDYTGGR 354
Query: 357 AVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDL 416
A T A L+++ P L LY G + T + ++ G LVNGPY+LITTAV+ADLGT +
Sbjct: 355 ASTCCAMLIIAAPMLFLYNKIGQNGLPTTVGMLLWCGALVNGPYALITTAVSADLGTHEC 414
Query: 417 IKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRIV 476
++GNSRAL+TVTAIIDGTGS+GAA+GPLLAG IS GWN+VF+MLI + + A + L R+V
Sbjct: 415 LRGNSRALSTVTAIIDGTGSIGAAVGPLLAGLISPTGWNNVFYMLIAADVLACLLLSRLV 474
Query: 477 KAEIR 481
EIR
Sbjct: 475 YKEIR 479
|
Danio rerio (taxid: 7955) |
| >sp|Q9WU81|SPX2_MOUSE Sugar phosphate exchanger 2 OS=Mus musculus GN=Slc37a2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 226/464 (48%), Positives = 302/464 (65%), Gaps = 24/464 (5%)
Query: 37 LVITFFAYASFHASRKPPSIVKSVLG--------PTFDGSNLRSND-PGWAPFNGPDGTH 87
L++TF YA +H SRKP SIVKS L P D +L W+PF+ D
Sbjct: 26 LLLTFLIYACYHMSRKPISIVKSRLHQNCSEMVRPVNDTHDLNDTTWCSWSPFDKDDYKE 85
Query: 88 RLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVY 147
LG +D AFL +Y++GM+ +G G+ + LR +L GM+ SGLFT +FGL Y+ ++H+L Y
Sbjct: 86 LLGAVDNAFLVAYAIGMFISGIFGERLPLRYYLSAGMVLSGLFTSLFGLGYFWNIHMLWY 145
Query: 148 FVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEF 207
FV +QI GL Q+ GWP VV +GNWFGK KRG IMG+WNSHTS+GNI+GS++A +
Sbjct: 146 FVLIQICNGLVQTTGWPSVVTCVGNWFGKGKRGFIMGIWNSHTSVGNILGSLIAGVWVNQ 205
Query: 208 GWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELP----GKEVELMNVEN------GDK 257
WG SF++PG + +GV FLFL+ PED+ P E E N E+ +
Sbjct: 206 HWGLSFIVPGIITAIMGVITFLFLIEYPEDVDCTPPRHHDDPEKEQDNPEDPVNSPYSSR 265
Query: 258 VENEEVGLLESGSSG-SLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHT 316
N ++ S G +AI FL A ++P V F+ CL F+KLV+YTFLYWLP YI +
Sbjct: 266 ESNVDIAASSSKEQGPEPEAISFLGALRIPGVIEFSLCLLFAKLVSYTFLYWLPLYIFNV 325
Query: 317 AVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRT 376
A H S K AG LST+FD+GG+ GGI+AGLISD +RA T L+L+ P + LY
Sbjct: 326 A----HFSAKEAGDLSTLFDVGGIIGGIMAGLISDYTNSRATTCCIMLILAAPMMFLYNY 381
Query: 377 YGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGS 436
G + ++I ++ + G+LVNGPY+LITTAV+ADLGT + +KGN++AL+TVTAIIDGTGS
Sbjct: 382 IGQNGITSSIVMLIICGVLVNGPYALITTAVSADLGTHESLKGNAKALSTVTAIIDGTGS 441
Query: 437 VGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRIVKAEI 480
+GAALGPLLAG IS GWN+VF+MLI + + A + L R+V EI
Sbjct: 442 IGAALGPLLAGLISPTGWNNVFYMLISADVLACLLLCRLVYKEI 485
|
Mus musculus (taxid: 10090) |
| >sp|Q58CV5|SPX2_BOVIN Sugar phosphate exchanger 2 OS=Bos taurus GN=SLC37A2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1029), Expect = e-111, Method: Compositional matrix adjust.
Identities = 227/473 (47%), Positives = 304/473 (64%), Gaps = 28/473 (5%)
Query: 30 IFHQITALVITFFAYASFHASRKPPSIVKS--------VLGPTFDGSNLRSND-PGWAPF 80
I+++ L+ITF Y +H SRKP S+VKS V+ P +L WAPF
Sbjct: 9 IWYRAFILLITFLIYTCYHMSRKPISVVKSRLHHNCSEVIQPVNSTHSLNDTTWCNWAPF 68
Query: 81 NGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWL 140
+ + LG +D AFL +Y++GM+ +G G+ + LR +L GM+ SGLFT +FGL Y+
Sbjct: 69 DKSNYKELLGAVDNAFLVAYAIGMFISGIFGERLPLRYYLTAGMLLSGLFTSLFGLGYFW 128
Query: 141 SVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVL 200
++H+L YFV VQIF GL Q+ GWP VV+ +GNWFGK KRGLIMG+WNSHTS+GNI+GS+L
Sbjct: 129 NIHVLWYFVLVQIFNGLVQTTGWPAVVSCVGNWFGKGKRGLIMGIWNSHTSVGNILGSLL 188
Query: 201 ASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPG-------KEVELMNVE 253
A ++ WG SFV+PG + +G+ F FL+ PED+ P + + +
Sbjct: 189 AGVWVDQQWGLSFVVPGVITAIMGIITFFFLIEYPEDVDCSPPQHHGNPEESQDQPEDPA 248
Query: 254 NGDKVENEEVGLLESGSSGSLQ------AIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLY 307
NG E LES + S + AI F A ++P V F+ CL F+KLV+YTFLY
Sbjct: 249 NGPSCNKESS--LESAVTCSKEASAQPSAISFFGALRIPGVVEFSLCLLFAKLVSYTFLY 306
Query: 308 WLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLS 367
WLP YI + VH + K AG LST+FD+GG+ GGILAGL+SD I RA T L+L+
Sbjct: 307 WLPLYISNV----VHFTAKEAGDLSTLFDVGGIIGGILAGLVSDYINGRATTCCVMLILA 362
Query: 368 IPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATV 427
P + LY G + +I ++ + G LVNGPY+LITTAV+ADLGT +KGN++AL+TV
Sbjct: 363 APMMFLYNHVGQRGIGISIVMLLICGALVNGPYALITTAVSADLGTHKSLKGNAKALSTV 422
Query: 428 TAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRIVKAEI 480
TAIIDGTGS+GAALGPLLAG IS GWN+VF+MLI + + A + L R+V EI
Sbjct: 423 TAIIDGTGSIGAALGPLLAGLISPTGWNNVFYMLIAADVLACLLLCRLVYKEI 475
|
Bos taurus (taxid: 9913) |
| >sp|Q8TED4|SPX2_HUMAN Sugar phosphate exchanger 2 OS=Homo sapiens GN=SLC37A2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 235/494 (47%), Positives = 311/494 (62%), Gaps = 36/494 (7%)
Query: 11 SLAPGLNLFPTLKPPN--KTLIFHQITALVITFFAYASFHASRKPPSIVKSVL------- 61
SLAPG+ F + + LI L++TF YA +H SRKP SIVKS L
Sbjct: 4 SLAPGVWFFRAFSRDSWFRGLI------LLLTFLIYACYHMSRKPISIVKSRLHQNCSEQ 57
Query: 62 -GPTFDGSNLRSNDP---GWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLR 117
P D +L ND WAPF+ + LG +D AFL +Y++GM+ +G G+ + LR
Sbjct: 58 IKPINDTHSL--NDTMWCSWAPFDKDNYKELLGGVDNAFLIAYAIGMFISGVFGERLPLR 115
Query: 118 LFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKA 177
+L GM+ SGLFT +FGL Y+ ++H L YFV +Q+ GL Q+ GWP VV +GNWFGK
Sbjct: 116 YYLSAGMLLSGLFTSLFGLGYFWNIHELWYFVVIQVCNGLVQTTGWPSVVTCVGNWFGKG 175
Query: 178 KRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPED 237
KRG IMG+WNSHTS+GNI+GS++A + WG SF++PG + +GV FLFL+ PED
Sbjct: 176 KRGFIMGIWNSHTSVGNILGSLIAGIWVNGQWGLSFIVPGIITAVMGVITFLFLIEHPED 235
Query: 238 LGFELPGKEVE-LMNVENGDKVENEEVGLLESG-------SSGSLQ---AIGFLEAWKLP 286
+ P E N +N + N + ESG S G + AI F A ++P
Sbjct: 236 VDCAPPQHHGEPAENQDNPEDPGNSPCSIRESGLETVAKCSKGPCEEPAAISFFGALRIP 295
Query: 287 RVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILA 346
V F+ CL F+KLV+YTFLYWLP YI + A H S K AG LST+FD+GG+ GGI+A
Sbjct: 296 GVVEFSLCLLFAKLVSYTFLYWLPLYIANVA----HFSAKEAGDLSTLFDVGGIIGGIVA 351
Query: 347 GLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTA 406
GL+SD RA T L+L+ P + LY G + ++I ++ + G LVNGPY+LITTA
Sbjct: 352 GLVSDYTNGRATTCCVMLILAAPMMFLYNYIGQDGIASSIVMLIICGGLVNGPYALITTA 411
Query: 407 VAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSIL 466
V+ADLGT +KGN++AL+TVTAIIDGTGS+GAALGPLLAG IS GWN+VF+MLI + +
Sbjct: 412 VSADLGTHKSLKGNAKALSTVTAIIDGTGSIGAALGPLLAGLISPTGWNNVFYMLISADV 471
Query: 467 FAGMFLIRIVKAEI 480
A + L R+V EI
Sbjct: 472 LACLLLCRLVYKEI 485
|
Homo sapiens (taxid: 9606) |
| >sp|Q8AVC3|SPX2_XENLA Sugar phosphate exchanger 2 OS=Xenopus laevis GN=slc37a2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 224/492 (45%), Positives = 304/492 (61%), Gaps = 28/492 (5%)
Query: 11 SLAPGLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDG--- 67
SLAP + L ++ + F +V+TF Y +H SRKP SIVK L
Sbjct: 4 SLAPAIRLMQSVSRDSCYRGF----IIVMTFLFYTCYHLSRKPISIVKGQLHRNCSALPN 59
Query: 68 -SNLRSNDP---GWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFG 123
N+ ND WAPF + LG LD AFL SY++GM+F+G G+ + LR +L G
Sbjct: 60 PPNISENDTTWCSWAPFENTNYKELLGSLDTAFLVSYAIGMFFSGIFGERLPLRYYLSGG 119
Query: 124 MMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIM 183
M+ SG+FT G Y+ ++H L Y++ QI GL Q+ GWP VV +GNWFGK KRG IM
Sbjct: 120 MIISGIFTSFMGFGYYWNIHALWYYILFQILNGLAQTTGWPAVVTCMGNWFGKGKRGFIM 179
Query: 184 GVWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELP 243
G+WNSHT++GNI+GS++A + WG SF++PG ++ G+F F FLV PED+G P
Sbjct: 180 GIWNSHTAVGNILGSLIAGAFVSTAWGLSFIVPGIIIAAFGIFCFFFLVEYPEDVGCTPP 239
Query: 244 GKEVELM-NVENGDKVENEEVGLLESGSSGS------------LQAIGFLEAWKLPRVAP 290
+ E ++EN N + +S S + QAI F+ A ++P V
Sbjct: 240 QQPEEAKHDLENIPVSYNSTDTIFKSTESNADDSENAHTEVEHPQAISFIGALRIPGVVE 299
Query: 291 FAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLIS 350
F+ CL F+KLV+YTFLYWLP YI + A K AG LST+FD+GG+ GGILAG IS
Sbjct: 300 FSLCLLFAKLVSYTFLYWLPLYIANDA----QFDPKAAGDLSTLFDVGGIIGGILAGGIS 355
Query: 351 DMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAAD 410
D A+T L+L+ P L +Y +G + T I ++ + G+LVNGPYSLITTAV+AD
Sbjct: 356 DYTGKSAITCTIMLILTAPMLFIYNYFGQTGISTTIAMLIICGILVNGPYSLITTAVSAD 415
Query: 411 LGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGM 470
LGT + ++GN++AL+TVTAIIDG+GS+GAALGP LAG +S+RGWN VF+MLI + + A +
Sbjct: 416 LGTHESLQGNAKALSTVTAIIDGSGSIGAALGPSLAGVLSSRGWNYVFYMLIAADICACL 475
Query: 471 FLIRIVKAEIRE 482
L R+V EIR
Sbjct: 476 LLARLVYKEIRS 487
|
Xenopus laevis (taxid: 8355) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 497 | ||||||
| 224142461 | 506 | predicted protein [Populus trichocarpa] | 0.989 | 0.972 | 0.770 | 0.0 | |
| 359484696 | 490 | PREDICTED: putative glycerol-3-phosphate | 0.967 | 0.981 | 0.802 | 0.0 | |
| 356556571 | 492 | PREDICTED: putative glycerol-3-phosphate | 0.967 | 0.977 | 0.777 | 0.0 | |
| 356530625 | 493 | PREDICTED: putative glycerol-3-phosphate | 0.967 | 0.975 | 0.763 | 0.0 | |
| 147811148 | 488 | hypothetical protein VITISV_043651 [Viti | 0.967 | 0.985 | 0.794 | 0.0 | |
| 449458003 | 512 | PREDICTED: putative glycerol-3-phosphate | 0.977 | 0.949 | 0.717 | 0.0 | |
| 255583488 | 473 | Regulatory protein uhpC, putative [Ricin | 0.913 | 0.959 | 0.726 | 0.0 | |
| 30678883 | 493 | putative glycerol-3-phosphate transporte | 0.955 | 0.963 | 0.721 | 0.0 | |
| 4586068 | 476 | putative membrane transporter [Arabidops | 0.919 | 0.960 | 0.696 | 0.0 | |
| 115466748 | 471 | Os06g0179900 [Oryza sativa Japonica Grou | 0.887 | 0.936 | 0.653 | 1e-157 |
| >gi|224142461|ref|XP_002324576.1| predicted protein [Populus trichocarpa] gi|222866010|gb|EEF03141.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/505 (77%), Positives = 426/505 (84%), Gaps = 13/505 (2%)
Query: 6 DQETVSLAPGLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTF 65
+T LAP LFP+LKPPNKTL FHQ T L ITF AYASFHASRKPPSIVK VLGP
Sbjct: 2 QSKTQILAPAFTLFPSLKPPNKTLTFHQFTVLAITFLAYASFHASRKPPSIVKGVLGPKI 61
Query: 66 ---------DGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDL 116
+ ++L SN GWAPFNGP GTHRLGELDLAFL++YS+GMYFAGHVGD IDL
Sbjct: 62 QLNSSTIESNLTSLESNGTGWAPFNGPKGTHRLGELDLAFLSAYSIGMYFAGHVGDRIDL 121
Query: 117 RLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGK 176
RLFLVFGM+GSGL TIIFGL YW +VHLL YFV VQI CGLFQSIGWPCVVAV+GNWFGK
Sbjct: 122 RLFLVFGMVGSGLLTIIFGLGYWFNVHLLGYFVSVQILCGLFQSIGWPCVVAVVGNWFGK 181
Query: 177 AKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPE 236
AKRGLIMG+W SHTS+GNIIGSV+ASGVLEFGWGWSFV+PG LVI GV VFLFLVV PE
Sbjct: 182 AKRGLIMGIWTSHTSVGNIIGSVVASGVLEFGWGWSFVVPGVLVILAGVLVFLFLVVNPE 241
Query: 237 DLGFELPGKEVEL----MNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFA 292
D+GFE PGKE+E+ +EN +KVE+EE GLL + S AIGFLEAW+LP VAPFA
Sbjct: 242 DIGFETPGKEIEMDVEVNGLENLEKVESEEAGLLGEENLDSTAAIGFLEAWRLPGVAPFA 301
Query: 293 FCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDM 352
FCLFFSKLVAYTFLYWLPFYI HT VAGVHLSHKTAGILST+FDIGGVFGG+LAG ISDM
Sbjct: 302 FCLFFSKLVAYTFLYWLPFYISHTDVAGVHLSHKTAGILSTVFDIGGVFGGVLAGFISDM 361
Query: 353 IEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLG 412
IEARAVTS+ FLLLSIPALVLYR YGS+SM+ N LMFLSGLLVNGPY+LITTAVAADLG
Sbjct: 362 IEARAVTSIVFLLLSIPALVLYRVYGSVSMLLNNALMFLSGLLVNGPYALITTAVAADLG 421
Query: 413 TQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFL 472
TQDLIKGNSRALATV+AIIDGTGSVGAA+GPLLAGYISTRGWNSVF MLIVSI A +FL
Sbjct: 422 TQDLIKGNSRALATVSAIIDGTGSVGAAVGPLLAGYISTRGWNSVFLMLIVSIFLASLFL 481
Query: 473 IRIVKAEIREKLNEGKWHWNSITTQ 497
IR+ K+EI+ LN+ KW N+ T Q
Sbjct: 482 IRVAKSEIKGMLNDRKWLSNNATAQ 506
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484696|ref|XP_002267328.2| PREDICTED: putative glycerol-3-phosphate transporter 5-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/491 (80%), Positives = 429/491 (87%), Gaps = 10/491 (2%)
Query: 6 DQETVSLAPGLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTF 65
T +LAPGLNLFPTLKPP+KTL FH+I+AL+ITF AYASFHASRKPPSIVKSVL P
Sbjct: 2 QSNTQALAPGLNLFPTLKPPHKTLTFHRISALLITFVAYASFHASRKPPSIVKSVLSPEI 61
Query: 66 DGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMM 125
SN S D GWAPFNGP GTHRLGELDLAFL+SYS+GMYF+GH GD +DLRLFLV GM+
Sbjct: 62 Q-SNSTSVDTGWAPFNGPHGTHRLGELDLAFLSSYSIGMYFSGHAGDRLDLRLFLVIGML 120
Query: 126 GSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGV 185
GSG+ TIIFGL WL+VH L +FVGVQI CGLFQSIGWPCVVAVLGNWFGK KRGLIMG+
Sbjct: 121 GSGILTIIFGLGDWLNVHKLGFFVGVQIVCGLFQSIGWPCVVAVLGNWFGKEKRGLIMGL 180
Query: 186 WNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGK 245
WNSHTS+GNI+GSV++S VLEFGWGWSFVLPG L+I +G+FVF+FLVV PEDLGFEL K
Sbjct: 181 WNSHTSVGNIVGSVVSSAVLEFGWGWSFVLPGILIIIIGIFVFMFLVVNPEDLGFELLAK 240
Query: 246 EVELMNVE--------NGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFF 297
E+E MNVE N +KVE+E+ GLL S + S AIGFLEAW+LP VAPFAFCLFF
Sbjct: 241 EIE-MNVEVESNKSMENSEKVESEDAGLLPSDVTDSSGAIGFLEAWRLPGVAPFAFCLFF 299
Query: 298 SKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARA 357
SKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFD+GGV GGILAG ISD IEARA
Sbjct: 300 SKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDVGGVLGGILAGYISDKIEARA 359
Query: 358 VTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLI 417
VTS+ FLLLSIPALVLYR YGSISM TNI LMFLSGLLVNGPYSLITTAVAADLGTQ LI
Sbjct: 360 VTSIIFLLLSIPALVLYRVYGSISMYTNIGLMFLSGLLVNGPYSLITTAVAADLGTQSLI 419
Query: 418 KGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRIVK 477
KGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLI++I AG+FLIRIVK
Sbjct: 420 KGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLILAICLAGLFLIRIVK 479
Query: 478 AEIREKLNEGK 488
EI+ KLN+GK
Sbjct: 480 TEIKSKLNDGK 490
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556571|ref|XP_003546598.1| PREDICTED: putative glycerol-3-phosphate transporter 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/490 (77%), Positives = 419/490 (85%), Gaps = 9/490 (1%)
Query: 5 QDQETVSLAPGLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPT 64
+++SLAP L LFP LKPP+KTL+FHQI LVITF AYASFHASRKPPSIVKSVLGPT
Sbjct: 1 MQSKSLSLAPALTLFPGLKPPHKTLLFHQICVLVITFLAYASFHASRKPPSIVKSVLGPT 60
Query: 65 FDG-----SNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLF 119
SNL S D GW PFNG GTHRLGELDLAFLTSYS+GMY AGHVGD IDLRLF
Sbjct: 61 VPSNGTQVSNLSSIDAGWPPFNGTRGTHRLGELDLAFLTSYSIGMYLAGHVGDRIDLRLF 120
Query: 120 LVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKR 179
LVFGMMGSGLFT++FGL YWL VH+L +FVGVQI CG+FQSIGWPCVVAV+GNW G++KR
Sbjct: 121 LVFGMMGSGLFTVLFGLGYWLDVHVLGFFVGVQIVCGVFQSIGWPCVVAVVGNWLGESKR 180
Query: 180 GLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLG 239
GLIMGVWNSHTS+GNIIGSV+ASG LEFGWGWSFV+PG L+I VG+ VFLFLVV PED+G
Sbjct: 181 GLIMGVWNSHTSVGNIIGSVVASGALEFGWGWSFVVPGILIILVGILVFLFLVVNPEDMG 240
Query: 240 FELPGKEVELM----NVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCL 295
F PG +VE+ + EN KVE EE L+ES +S S AIGFLEAWKLP VAPFAFCL
Sbjct: 241 FVHPGMDVEMSVEMDSAENQQKVEAEEAKLIESDNSESSSAIGFLEAWKLPGVAPFAFCL 300
Query: 296 FFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEA 355
FFSKLVAYTFLYWLPFYIRHTAVAGVH+SHKTAG+LSTIFDIGGV GGI AG ISD+IEA
Sbjct: 301 FFSKLVAYTFLYWLPFYIRHTAVAGVHMSHKTAGLLSTIFDIGGVLGGITAGFISDLIEA 360
Query: 356 RAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQD 415
RA+TS+ FL LSIPAL LYR +GS+S++ NI LMFLSG LVNGPYSLITTAVAADLGTQ
Sbjct: 361 RAITSILFLFLSIPALALYRIFGSLSILINIILMFLSGFLVNGPYSLITTAVAADLGTQS 420
Query: 416 LIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRI 475
L NSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLI+SI FAG+FLIRI
Sbjct: 421 LNYRNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLILSIFFAGLFLIRI 480
Query: 476 VKAEIREKLN 485
+ EIREKL+
Sbjct: 481 ARTEIREKLS 490
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530625|ref|XP_003533881.1| PREDICTED: putative glycerol-3-phosphate transporter 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/491 (76%), Positives = 418/491 (85%), Gaps = 10/491 (2%)
Query: 5 QDQETVSLAPGLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPT 64
+++SLAP L FP LKPP+KTL+FHQI LVITF AYASFHASRKPPSIVKSVLGPT
Sbjct: 1 MQSKSLSLAPALTFFPGLKPPHKTLLFHQICVLVITFLAYASFHASRKPPSIVKSVLGPT 60
Query: 65 FDG------SNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRL 118
S++ S D GW PFNG GT RLGELDLAFLTSYS+GMY AGHVGD IDLRL
Sbjct: 61 VPSNGTQVVSDMSSIDAGWPPFNGTRGTRRLGELDLAFLTSYSIGMYLAGHVGDRIDLRL 120
Query: 119 FLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAK 178
FLVFGMMGSGLFT++FGL YWL VH+L ++VGVQIFCG+FQSIGWPCVVA++GNW G++K
Sbjct: 121 FLVFGMMGSGLFTVLFGLGYWLDVHVLGFYVGVQIFCGVFQSIGWPCVVAIVGNWLGESK 180
Query: 179 RGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDL 238
RGLIMGVWNSHTS+GNIIGSV+ASGVLEFGWGWSFV+PG L+I VG+ VFLFLVV PED+
Sbjct: 181 RGLIMGVWNSHTSVGNIIGSVVASGVLEFGWGWSFVVPGILIILVGILVFLFLVVNPEDM 240
Query: 239 GFELPGKEVELM----NVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFC 294
GF PG ++E+ + EN KVE+EE L+ S S S AIGFLEAWKLP VAPFAFC
Sbjct: 241 GFVHPGMDIEMSVETDSAENRQKVESEEAKLIASEISDSSSAIGFLEAWKLPGVAPFAFC 300
Query: 295 LFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIE 354
LFFSKLVAYTFLYWLPFYIRHTAVAGVH+SHKTAG+LSTIFDIGGV GGI AG ISD+IE
Sbjct: 301 LFFSKLVAYTFLYWLPFYIRHTAVAGVHMSHKTAGLLSTIFDIGGVLGGITAGFISDLIE 360
Query: 355 ARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQ 414
ARA+TS+ FL LSIPAL LYR +GS+SM+ NI LMFLSG LVNGPYSLITTAVAADLGTQ
Sbjct: 361 ARAITSILFLFLSIPALALYRIFGSLSMLINIILMFLSGFLVNGPYSLITTAVAADLGTQ 420
Query: 415 DLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIR 474
+ NSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLI+SI FAG+FLIR
Sbjct: 421 SMNDRNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLILSIFFAGLFLIR 480
Query: 475 IVKAEIREKLN 485
I + EIREKL+
Sbjct: 481 IARTEIREKLS 491
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147811148|emb|CAN70162.1| hypothetical protein VITISV_043651 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/486 (79%), Positives = 419/486 (86%), Gaps = 5/486 (1%)
Query: 5 QDQETVSLAPGLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPT 64
T +LAPGLNLFPTLKPP+KTL FH+I+AL+ITF AYASFHASR PPSIVKSVL P
Sbjct: 1 MQSNTQALAPGLNLFPTLKPPHKTLTFHRISALLITFIAYASFHASRXPPSIVKSVLSPE 60
Query: 65 FDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGM 124
SN S D GWAPFNGP GTHRLGELDLAFL+SYS+GMYF+GH GD +DLRLFLV GM
Sbjct: 61 IQ-SNSTSVDTGWAPFNGPHGTHRLGELDLAFLSSYSIGMYFSGHAGDRLDLRLFLVIGM 119
Query: 125 MGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMG 184
+GSG+ TIIFGL WL+VH L +FVGVQI CGLFQSIGWPCVVAVLGNWFGK KRGLIMG
Sbjct: 120 LGSGILTIIFGLGDWLNVHKLGFFVGVQIVCGLFQSIGWPCVVAVLGNWFGKEKRGLIMG 179
Query: 185 VWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPG 244
+WNSHTS+GNI+GSV++S VLEFGWGWSFVLPG L+I +G+FVF+FLVV PEDLGFEL
Sbjct: 180 LWNSHTSVGNIVGSVVSSAVLEFGWGWSFVLPGILIIIIGIFVFMFLVVNPEDLGFELLA 239
Query: 245 KEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYT 304
KE+E MNVE KVE+E+ GLL S + S AIGFLEAW+LP VAPFAFCLFFSKLVAYT
Sbjct: 240 KEIE-MNVE---KVESEDAGLLPSDVTDSSGAIGFLEAWRLPGVAPFAFCLFFSKLVAYT 295
Query: 305 FLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFL 364
FLYWLPFYIRHTAVAGVHLSHKTAGILSTIFD+GGV GGILAG ISD IEARAVTS+ FL
Sbjct: 296 FLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDVGGVLGGILAGYISDKIEARAVTSIIFL 355
Query: 365 LLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRAL 424
LLSIPALVLYR YGSISM TNI LMFLSGLLVNGPYSLITTAVAADLGTQ LIKGNSRAL
Sbjct: 356 LLSIPALVLYRVYGSISMYTNIGLMFLSGLLVNGPYSLITTAVAADLGTQSLIKGNSRAL 415
Query: 425 ATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRIVKAEIREKL 484
ATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLI++I AG+FLIRI A +
Sbjct: 416 ATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLILAICLAGLFLIRIFIASSMDAW 475
Query: 485 NEGKWH 490
G W
Sbjct: 476 LTGLWE 481
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458003|ref|XP_004146737.1| PREDICTED: putative glycerol-3-phosphate transporter 5-like [Cucumis sativus] gi|449505417|ref|XP_004162463.1| PREDICTED: putative glycerol-3-phosphate transporter 5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/503 (71%), Positives = 417/503 (82%), Gaps = 17/503 (3%)
Query: 11 SLAPGLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFD---- 66
S+AP ++L P LKPP++TL FH+I L ITFFAYASFHASRKPPSIVKSVLGPT
Sbjct: 6 SVAPAIDLIPCLKPPHRTLDFHRILVLTITFFAYASFHASRKPPSIVKSVLGPTIPVNSS 65
Query: 67 ---------GSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLR 117
S+L SN GWAPFNGPDGT LGELDLAFL++YS+GMYFAGHVGD IDLR
Sbjct: 66 TILLNLTSIESDLTSNGTGWAPFNGPDGTQLLGELDLAFLSAYSIGMYFAGHVGDRIDLR 125
Query: 118 LFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKA 177
LFLVFGMMGSG+ TI+FGL YWL++H+L +F+ VQI CGL QSIGWPCVVA++GNWFG+A
Sbjct: 126 LFLVFGMMGSGICTILFGLGYWLNLHVLWFFISVQIVCGLVQSIGWPCVVAIVGNWFGRA 185
Query: 178 KRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPED 237
+RGLIMG+WNSHTS+GNI+GS++ASG+LE GWGWSFV+PG LVIFVG+ VFLFLVV P D
Sbjct: 186 RRGLIMGIWNSHTSVGNILGSIIASGILELGWGWSFVVPGALVIFVGILVFLFLVVSPRD 245
Query: 238 LGFELPGKEVELMN----VENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAF 293
+GF ++EL VE + ++EE LL+ S S+ AIGFLEAW+LP VAPFA
Sbjct: 246 IGFGNSDGQIELNGEVSPVEKLEITDSEEAVLLDDVHSDSMAAIGFLEAWRLPGVAPFAA 305
Query: 294 CLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMI 353
CLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGV GGILAG ISD+I
Sbjct: 306 CLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVCGGILAGFISDLI 365
Query: 354 EARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGT 413
+ARAVTS+ FL+LS+PALVLYR +GSIS+ITN LMFLSGLLVNGPYSLITTAVAADLGT
Sbjct: 366 DARAVTSITFLVLSVPALVLYRAFGSISIITNTCLMFLSGLLVNGPYSLITTAVAADLGT 425
Query: 414 QDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLI 473
Q I GNSRALATVTAIIDGTGSVGAALGPL+AGY S GWNSVFF+LI+SI FA + L+
Sbjct: 426 QSSIGGNSRALATVTAIIDGTGSVGAALGPLMAGYFSRFGWNSVFFVLILSIFFAALCLV 485
Query: 474 RIVKAEIREKLNEGKWHWNSITT 496
+ + EI+EKL+EG+W N T+
Sbjct: 486 CLARTEIKEKLDEGRWFSNRQTS 508
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255583488|ref|XP_002532502.1| Regulatory protein uhpC, putative [Ricinus communis] gi|223527777|gb|EEF29878.1| Regulatory protein uhpC, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/490 (72%), Positives = 390/490 (79%), Gaps = 36/490 (7%)
Query: 10 VSLAPGLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFD--- 66
++L P L LFP+L PP+KT+ FH+ L+ITF AYASFHASRKPPSIVKSVLGP
Sbjct: 1 MTLPPALYLFPSLNPPHKTIAFHKYLVLLITFLAYASFHASRKPPSIVKSVLGPNIQLNS 60
Query: 67 ----------GSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDL 116
SN S D GWAPFN DGT RLGELDLAFL SYS+GMYFAGHVGD IDL
Sbjct: 61 SLAESNAVSLESNSSSTDTGWAPFNASDGTRRLGELDLAFLLSYSIGMYFAGHVGDRIDL 120
Query: 117 RLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGK 176
RLFLV GMMGSG+ TI FGL YW F SIGWPCVVAV+GNWFGK
Sbjct: 121 RLFLVSGMMGSGILTIAFGLGYW------------------FNSIGWPCVVAVVGNWFGK 162
Query: 177 AKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPE 236
AKRG IMGVWNSHTS+GNI+GSV AS +LE+GWGWSFV+PG LVI VG VF FLVV PE
Sbjct: 163 AKRGFIMGVWNSHTSVGNIVGSVAASALLEYGWGWSFVVPGVLVILVGFLVFFFLVVSPE 222
Query: 237 DLGFELPGKEVELMNV----ENGDKVENEEVGLLESGS-SGSLQAIGFLEAWKLPRVAPF 291
D G E+P +E+E+ EN +KVE+EE GL+ S S S SL AIGFLEAW+LP VAPF
Sbjct: 223 DTGLEVPTQEIEMSQEVDGEENAEKVESEETGLIRSESESDSLAAIGFLEAWRLPGVAPF 282
Query: 292 AFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISD 351
AFCLFFSKLVAYTFLYWLPFYIR+TA+AGVHLSHKTAG LSTIFDIGGVFGG+LAG ISD
Sbjct: 283 AFCLFFSKLVAYTFLYWLPFYIRNTAIAGVHLSHKTAGNLSTIFDIGGVFGGVLAGYISD 342
Query: 352 MIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADL 411
+I ARAVTS FL LSIPAL++YR YGS+SM+TNI LMFLSGLLVNGPYSLITTAVAADL
Sbjct: 343 LIGARAVTSTVFLSLSIPALIIYRVYGSVSMVTNIVLMFLSGLLVNGPYSLITTAVAADL 402
Query: 412 GTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMF 471
GTQD IKGNSRALATVTAIIDGTGS GAALGPLLAGYIST GWNSVF MLI+SIL A MF
Sbjct: 403 GTQDAIKGNSRALATVTAIIDGTGSAGAALGPLLAGYISTIGWNSVFAMLIISILLAIMF 462
Query: 472 LIRIVKAEIR 481
LIR+V+ EIR
Sbjct: 463 LIRVVRTEIR 472
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30678883|ref|NP_178954.2| putative glycerol-3-phosphate transporter 5 [Arabidopsis thaliana] gi|317376204|sp|Q9SL56.2|GLPT5_ARATH RecName: Full=Putative glycerol-3-phosphate transporter 5; Short=G-3-P transporter 5; AltName: Full=Glycerol-3-phosphate permease 5; Short=AtG3Pp5; Short=G-3-P permease 5 gi|330251121|gb|AEC06215.1| putative glycerol-3-phosphate transporter 5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/482 (72%), Positives = 396/482 (82%), Gaps = 7/482 (1%)
Query: 5 QDQETVSLAPGLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPT 64
V LAP +LFP L P+KT FHQI L+ITF AYASFHASRKPPSIVKSVLGP
Sbjct: 1 MQSRIVGLAPAFSLFPNLNTPHKTFTFHQILVLIITFTAYASFHASRKPPSIVKSVLGP- 59
Query: 65 FDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGM 124
N S D GWAPFNG GT RLGELDLAFL+SY++GMYFAGH+GD IDLR FLVFGM
Sbjct: 60 -PSLNSSSIDNGWAPFNGTQGTKRLGELDLAFLSSYALGMYFAGHLGDRIDLRYFLVFGM 118
Query: 125 MGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMG 184
MGSG+ T++FGL YW++VH L +++ VQI CGLFQSIGWPCVV+V+GNW GK KRGLIMG
Sbjct: 119 MGSGILTLVFGLGYWMNVHTLGFYMSVQIVCGLFQSIGWPCVVSVVGNWCGKEKRGLIMG 178
Query: 185 VWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPG 244
+WNSHTS+GNI+GSV+AS VL+FGWGWSFVLPG LV+ GV VF+FLVV P DLGFE G
Sbjct: 179 LWNSHTSVGNILGSVIASSVLDFGWGWSFVLPGVLVLVSGVVVFMFLVVSPNDLGFEELG 238
Query: 245 KEVELM-----NVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSK 299
KE+E+ NVE + E +L S AIGFLEAW+LP VAP+AFCLFFSK
Sbjct: 239 KEIEIEMSLGENVEESLRKHEAEGAVLLENVDDSSFAIGFLEAWRLPGVAPYAFCLFFSK 298
Query: 300 LVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVT 359
LVAYTFLYWLP+Y+RHTAVAGV+LSHKTAGILST+FD+GGV GGI AG ISD I+ARA+T
Sbjct: 299 LVAYTFLYWLPYYLRHTAVAGVNLSHKTAGILSTVFDVGGVLGGISAGFISDKIKARALT 358
Query: 360 SVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKG 419
S+ FL LSIPAL++YR YGS+SM NI LMF+SGLLVNGPY+LITTAVAADLGTQD IKG
Sbjct: 359 SITFLALSIPALIMYRVYGSVSMFINIVLMFISGLLVNGPYALITTAVAADLGTQDSIKG 418
Query: 420 NSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRIVKAE 479
N RALATVTAIIDGTGSVGAALGPLLAGYIS+RGWNSVFFMLIVSI FAG+FL+R+ K+E
Sbjct: 419 NGRALATVTAIIDGTGSVGAALGPLLAGYISSRGWNSVFFMLIVSIFFAGLFLVRLAKSE 478
Query: 480 IR 481
I
Sbjct: 479 IN 480
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4586068|gb|AAD25685.1| putative membrane transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/481 (69%), Positives = 382/481 (79%), Gaps = 24/481 (4%)
Query: 6 DQETVSLAPGLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTF 65
V LAP +LFP L P+KT FHQI L+ITF AYASFHASRKPPSIVKSVLGP
Sbjct: 2 QSRIVGLAPAFSLFPNLNTPHKTFTFHQILVLIITFTAYASFHASRKPPSIVKSVLGP-- 59
Query: 66 DGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMM 125
N S D GWAPFNG GT RLGELDLAFL+SY++GMYFAGH+GD IDLR FLVFGMM
Sbjct: 60 PSLNSSSIDNGWAPFNGTQGTKRLGELDLAFLSSYALGMYFAGHLGDRIDLRYFLVFGMM 119
Query: 126 GSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGV 185
GSG+ T++FGL YW++VH L +++ VQI CGLFQSIGWPCVV+V+GNW GK KRGLIMG+
Sbjct: 120 GSGILTLVFGLGYWMNVHTLGFYMSVQIVCGLFQSIGWPCVVSVVGNWCGKEKRGLIMGL 179
Query: 186 WNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGK 245
WNSHTS+GNI+GSV+AS VL+FGWGWSFVLPG LV+ GV VF+FLVV P DLGFE GK
Sbjct: 180 WNSHTSVGNILGSVIASSVLDFGWGWSFVLPGVLVLVSGVVVFMFLVVSPNDLGFEELGK 239
Query: 246 EVEL-----MNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKL 300
E+E+ NVE + E +L S AIGFLEAW+LP VAP+AFCLFFSKL
Sbjct: 240 EIEIEMSLGENVEESLRKHEAEGAVLLENVDDSSFAIGFLEAWRLPGVAPYAFCLFFSKL 299
Query: 301 VAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTS 360
VAYTFLYWLP+Y+RHTAVAGV+LSHKTAGILST+FD+GGV GGI AG ISD I+ARA+TS
Sbjct: 300 VAYTFLYWLPYYLRHTAVAGVNLSHKTAGILSTVFDVGGVLGGISAGFISDKIKARALTS 359
Query: 361 VAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGN 420
+ FL LSIPAL++YR YG +NGPY+LITTAVAADLGTQD IKGN
Sbjct: 360 ITFLALSIPALIMYRVYG-----------------INGPYALITTAVAADLGTQDSIKGN 402
Query: 421 SRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRIVKAEI 480
RALATVTAIIDGTGSVGAALGPLLAGYIS+RGWNSVFFMLIVSI FAG+FL+R+ K+EI
Sbjct: 403 GRALATVTAIIDGTGSVGAALGPLLAGYISSRGWNSVFFMLIVSIFFAGLFLVRLAKSEI 462
Query: 481 R 481
Sbjct: 463 N 463
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115466748|ref|NP_001056973.1| Os06g0179900 [Oryza sativa Japonica Group] gi|24413995|dbj|BAC22246.1| putative glycerol 3-phosphate permease [Oryza sativa Japonica Group] gi|55773771|dbj|BAD72554.1| putative glycerol 3-phosphate permease [Oryza sativa Japonica Group] gi|113595013|dbj|BAF18887.1| Os06g0179900 [Oryza sativa Japonica Group] gi|125554299|gb|EAY99904.1| hypothetical protein OsI_21902 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 302/462 (65%), Positives = 349/462 (75%), Gaps = 21/462 (4%)
Query: 32 HQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGE 91
Q L +TF AYASFHASRKPPSIVK+VL S D WAPF+GP G HRLGE
Sbjct: 20 RQYAVLGLTFAAYASFHASRKPPSIVKAVL----------SAD--WAPFSGPRGPHRLGE 67
Query: 92 LDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGV 151
LD+AFL++Y+ M+ AGH+ D DLR L M+ SG + G AY+L VH L +F+
Sbjct: 68 LDVAFLSAYAAAMFAAGHLADRADLRGLLAAAMLASGATSAALGAAYFLGVHSLAFFLAA 127
Query: 152 QIFCGLFQSIGWPCVVAVLGNWFGKAK-RGLIMGVWNSHTSIGNIIGSVLASGVLEFGWG 210
Q+ G+ QS GWPCVVAV+GNWFG A RG IMGVWNSHTS+GNI GSVL++ VLEFGWG
Sbjct: 128 QVASGVVQSAGWPCVVAVVGNWFGHASSRGTIMGVWNSHTSVGNIAGSVLSAAVLEFGWG 187
Query: 211 WSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVE------NEEVG 264
WSF++P F++ +GV V +FL+ P D G ++ EVE MN +G++VE E+
Sbjct: 188 WSFLVPAFVIAALGVVVLVFLIAHPMDAGLDIEAIEVE-MNGGSGEEVELLGEDKKEDED 246
Query: 265 LLESGSSGSL-QAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHL 323
+LE + L +AIGFLEAW+LP VAPFAFCLFFSKLVAYTFLYWLPFYIRH AVAG L
Sbjct: 247 VLEVEAVAELPRAIGFLEAWRLPGVAPFAFCLFFSKLVAYTFLYWLPFYIRHNAVAGQFL 306
Query: 324 SHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMI 383
SHK +GILS +FDIGGV GGI AGL+SD I ARAVTS FL LSIPAL+LYRTYGSISM
Sbjct: 307 SHKASGILSVVFDIGGVLGGISAGLLSDKIGARAVTSALFLFLSIPALILYRTYGSISMH 366
Query: 384 TNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGP 443
NI LMFL+G VNGPYSLITTAVA DLGTQD IKGNSRALATV+AIIDGTGSVGAALGP
Sbjct: 367 HNIGLMFLAGYFVNGPYSLITTAVATDLGTQDAIKGNSRALATVSAIIDGTGSVGAALGP 426
Query: 444 LLAGYISTRGWNSVFFMLIVSILFAGMFLIRIVKAEIREKLN 485
LL GYISTRGWNSVFFMLIVSI A +FLIR+ K EI K++
Sbjct: 427 LLTGYISTRGWNSVFFMLIVSISLALVFLIRLAKDEIVSKIS 468
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 497 | ||||||
| TAIR|locus:2056457 | 493 | G3Pp5 "AT2G13100" [Arabidopsis | 0.943 | 0.951 | 0.693 | 1.7e-176 | |
| TAIR|locus:2099585 | 523 | G3Pp1 "AT3G47420" [Arabidopsis | 0.971 | 0.923 | 0.524 | 7.4e-137 | |
| TAIR|locus:2028125 | 510 | G3Pp3 "AT1G30560" [Arabidopsis | 0.941 | 0.917 | 0.526 | 3.3e-134 | |
| TAIR|locus:2122664 | 504 | G3Pp2 "AT4G25220" [Arabidopsis | 0.923 | 0.910 | 0.522 | 1.6e-132 | |
| TAIR|locus:2129176 | 544 | G3Pp4 "AT4G17550" [Arabidopsis | 0.859 | 0.784 | 0.541 | 1.3e-123 | |
| ZFIN|ZDB-GENE-040426-1949 | 494 | slc37a2 "solute carrier family | 0.931 | 0.937 | 0.455 | 5.8e-105 | |
| UNIPROTKB|E1C5M0 | 497 | SLC37A2 "Uncharacterized prote | 0.929 | 0.929 | 0.461 | 3.2e-104 | |
| UNIPROTKB|E1B9Q0 | 533 | SLC37A1 "Uncharacterized prote | 0.404 | 0.377 | 0.570 | 1e-103 | |
| UNIPROTKB|E2RMR9 | 527 | SLC37A1 "Uncharacterized prote | 0.404 | 0.381 | 0.570 | 3.5e-103 | |
| UNIPROTKB|J9P5Y6 | 531 | SLC37A1 "Uncharacterized prote | 0.404 | 0.378 | 0.570 | 3.5e-103 |
| TAIR|locus:2056457 G3Pp5 "AT2G13100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1714 (608.4 bits), Expect = 1.7e-176, P = 1.7e-176
Identities = 330/476 (69%), Positives = 375/476 (78%)
Query: 10 VSLAPGLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSN 69
V LAP +LFP L P+KT FHQI L+ITF AYASFHASRKPPSIVKSVLGP N
Sbjct: 6 VGLAPAFSLFPNLNTPHKTFTFHQILVLIITFTAYASFHASRKPPSIVKSVLGPP--SLN 63
Query: 70 LRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGL 129
S D GWAPFNG GT RLGELDLAFL+SY++GMYFAGH+GD IDLR FLVFGMMGSG+
Sbjct: 64 SSSIDNGWAPFNGTQGTKRLGELDLAFLSSYALGMYFAGHLGDRIDLRYFLVFGMMGSGI 123
Query: 130 FTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSH 189
T++FGL YW++VH L +++ VQI CGLFQSIGWPCVV+V+GNW GK KRGLIMG+WNSH
Sbjct: 124 LTLVFGLGYWMNVHTLGFYMSVQIVCGLFQSIGWPCVVSVVGNWCGKEKRGLIMGLWNSH 183
Query: 190 TSIGNIIGSVLASGVLEFGWGWSXXXXXXXXXXXXXXXXXXXXXRPEDLGFELPGKEVEL 249
TS+GNI+GSV+AS VL+FGWGWS P DLGFE GKE+E+
Sbjct: 184 TSVGNILGSVIASSVLDFGWGWSFVLPGVLVLVSGVVVFMFLVVSPNDLGFEELGKEIEI 243
Query: 250 M-----NVENGDKVENXXXXXXXXXXXXXXQAIGFLEAWKLPRVAPFAFCLFFSKLVAYT 304
NVE + AIGFLEAW+LP VAP+AFCLFFSKLVAYT
Sbjct: 244 EMSLGENVEESLRKHEAEGAVLLENVDDSSFAIGFLEAWRLPGVAPYAFCLFFSKLVAYT 303
Query: 305 FLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFL 364
FLYWLP+Y+RHTAVAGV+LSHKTAGILST+FD+GGV GGI AG ISD I+ARA+TS+ FL
Sbjct: 304 FLYWLPYYLRHTAVAGVNLSHKTAGILSTVFDVGGVLGGISAGFISDKIKARALTSITFL 363
Query: 365 LLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRAL 424
LSIPAL++YR YGS+SM NI LMF+SGLLVNGPY+LITTAVAADLGTQD IKGN RAL
Sbjct: 364 ALSIPALIMYRVYGSVSMFINIVLMFISGLLVNGPYALITTAVAADLGTQDSIKGNGRAL 423
Query: 425 ATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRIVKAEI 480
ATVTAIIDGTGSVGAALGPLLAGYIS+RGWNSVFFMLIVSI FAG+FL+R+ K+EI
Sbjct: 424 ATVTAIIDGTGSVGAALGPLLAGYISSRGWNSVFFMLIVSIFFAGLFLVRLAKSEI 479
|
|
| TAIR|locus:2099585 G3Pp1 "AT3G47420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1340 (476.8 bits), Expect = 7.4e-137, P = 7.4e-137
Identities = 262/500 (52%), Positives = 343/500 (68%)
Query: 5 QDQETVSLAP-GLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGP 63
Q + + P G+ +K + +Q L++TF AYAS+HA+RK SIVKS L P
Sbjct: 6 QSEPEMEKKPIGIRFLERIKGSKLSYSAYQAIVLIVTFLAYASYHAARKTTSIVKSALDP 65
Query: 64 TFDGSNLRS-------------NDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHV 110
+ L S + GWAPFNGPDGT LGE+D+AFL Y+ GMYFAGH+
Sbjct: 66 QSPDTGLNSLLLRFTSFGSSVKEEGGWAPFNGPDGTVLLGEIDVAFLAVYAFGMYFAGHL 125
Query: 111 GDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVL 170
GD ++LR+FL GM+G+GLFT +FG+ YW ++H YF+ +Q+ GLFQS GWP VVAV+
Sbjct: 126 GDRMNLRIFLTVGMIGTGLFTSLFGVGYWGNIHSFYYFLIMQMLAGLFQSSGWPSVVAVV 185
Query: 171 GNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSXXXXXXXXXXXXXXXXXX 230
GNWF K KRGLIMG+WN+HTS+GNI GS++A+ +L +GWGWS
Sbjct: 186 GNWFNKKKRGLIMGIWNAHTSVGNITGSLIAAAMLRYGWGWSFVVPGVIIVVIGLVNYAF 245
Query: 231 XXXRPEDLGFELPGKEVELMNVENGDKV-ENXXXXXXXXXXXXXXQAIGFLEAWKLPRVA 289
PE++G E + ++ + + G+ V E +A+GF+EAW++P VA
Sbjct: 246 LPVSPENVGAERD-EVLDSSSEKIGNSVNEPLLLSSSDSETDDKKRAVGFIEAWRIPGVA 304
Query: 290 PFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLI 349
PFA CLFF+KLVAYTFLYWLPFY+ HTA+ G +LS +TAG LST+FD+GGV GGI+AG I
Sbjct: 305 PFALCLFFAKLVAYTFLYWLPFYVSHTAIEGEYLSDETAGNLSTMFDVGGVVGGIMAGYI 364
Query: 350 SDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAA 409
SD I ARA+T+ +F+ SIPAL YR+YG +S++ N LMFL+G+LVNGPY+LITTAV+A
Sbjct: 365 SDRIGARAITAASFMYCSIPALFFYRSYGHVSLLANASLMFLTGMLVNGPYALITTAVSA 424
Query: 410 DLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRG-WNSVFFMLIVSILFA 468
DLGT +KGNSRALATVTAIIDGTGSVGAA+GPLL GYIS+RG W +VF ML+ + A
Sbjct: 425 DLGTHSSLKGNSRALATVTAIIDGTGSVGAAVGPLLTGYISSRGSWTAVFTMLMGAAFVA 484
Query: 469 GMFLIRIVKAEIREKLNEGK 488
G+ L R+V AE+ EK+ E +
Sbjct: 485 GLLLTRLVMAEVAEKIAESR 504
|
|
| TAIR|locus:2028125 G3Pp3 "AT1G30560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1315 (468.0 bits), Expect = 3.3e-134, P = 3.3e-134
Identities = 249/473 (52%), Positives = 328/473 (69%)
Query: 14 PGLNLFPTLKPPNKTLIFHQITALV--ITFFAYASFHASRKPPSIVKSVLGPTFDGSNLR 71
PG++ + K L F Q A+V +TF AY +FHA+RKP SIVK L G
Sbjct: 17 PGIHFLERFRRSGK-LSFKQYQAMVFVLTFIAYIAFHATRKPNSIVKGTLSEQPTGHFKG 75
Query: 72 SNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFT 131
++ GWAPF+GPDGT LG++DLAFL+ Y+VGM+ AGH+GD +DLR FL GM+G+G+ T
Sbjct: 76 ADKGGWAPFDGPDGTALLGQIDLAFLSVYAVGMFVAGHLGDRLDLRTFLTIGMVGTGVCT 135
Query: 132 IIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTS 191
+FG+A+W ++H YF+ +Q G FQSIGWPCVVAVLGNWF K +RG+IMGVW++HTS
Sbjct: 136 ALFGVAFWANIHAFYYFLAIQTLAGWFQSIGWPCVVAVLGNWFDKKRRGVIMGVWSAHTS 195
Query: 192 IGNIIGSVLASGVLEFGWGWSXXXXXXXXXXXXXXXXXXXXXRPEDLGFELPGKEVELMN 251
+GNIIG+++A+G+L+FGWGWS P + E G EV+
Sbjct: 196 LGNIIGTLIATGLLKFGWGWSFVGPALLITFLGIVVYLFLPVNPHAVEAERDGSEVD-ST 254
Query: 252 VENGDKVENXXXXXXXXXXXXXXQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPF 311
+ GD + +A+GFL AWK+P VAPFAFCLFF+KLV+YTFLYWLPF
Sbjct: 255 MRLGDTITESFLSSRTSTGFDR-RAVGFLAAWKIPGVAPFAFCLFFTKLVSYTFLYWLPF 313
Query: 312 YIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPAL 371
Y+ T + G LS +T+G LST+FD+GGV GGILAG SD ++ RA+T+ F+ L+IPAL
Sbjct: 314 YVSQTEIGGEQLSQETSGNLSTLFDVGGVVGGILAGYFSDQLDGRAITAGGFIYLTIPAL 373
Query: 372 VLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAII 431
LYR YG +SM NI LMF++GL VNGPY+LITTAVAADLGT +KGN+RALATVTAII
Sbjct: 374 FLYRIYGHVSMTINIILMFVAGLFVNGPYALITTAVAADLGTHKSLKGNARALATVTAII 433
Query: 432 DGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRIVKAEIREKL 484
DGTGSVGAA+GP+L GYI+ W++VF+ML+ + L +G+ L ++ E++ L
Sbjct: 434 DGTGSVGAAIGPVLTGYIAAISWDAVFYMLMTAALISGLLLTTLIIEEVKTLL 486
|
|
| TAIR|locus:2122664 G3Pp2 "AT4G25220" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
Identities = 247/473 (52%), Positives = 327/473 (69%)
Query: 15 GLNLFPTLKPPNKTLIFHQITALV--ITFFAYASFHASRKPPSIVKSVLGP-TFDGSNLR 71
G+ K + L F Q ALV +TF AY +FHA+RKP SIVK L T +G
Sbjct: 18 GIQFLEKFKRSGR-LSFKQYQALVFILTFVAYIAFHAARKPNSIVKGTLSASTIEG---- 72
Query: 72 SNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFT 131
GWAPF+GPDGT LG++DLAFL+ Y+VGM+ AGH+GD +DLR FL GM+G+GLFT
Sbjct: 73 ----GWAPFDGPDGTALLGQIDLAFLSVYAVGMFVAGHLGDRLDLRTFLTIGMIGTGLFT 128
Query: 132 IIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTS 191
+FG+A+W + H YF+ VQ+ GLFQSIGWPC+VAVLGNWF K +RG+IMGVW++HTS
Sbjct: 129 ALFGVAFWANFHSFYYFLAVQVMAGLFQSIGWPCIVAVLGNWFDKKRRGMIMGVWSAHTS 188
Query: 192 IGNIIGSVLASGVLEFGWGWSXXXXXXXXXXXXXXXXXXXXXRPEDLGFELPGKEVELMN 251
+GNI GS++ASG+L +GWGWS P + E G E++
Sbjct: 189 LGNIAGSLIASGLLRYGWGWSFLGPAFLMTFLGIVVYLFLPVNPPTVEAERDGTEID-ST 247
Query: 252 VENGDKVENXXXXXXXXXXXXXXQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPF 311
+ GD + +A+GF+ AWK+P VAPFAFCLFF+KLV+YTFLYWLPF
Sbjct: 248 MRLGDTITESLLESRMSTGFDR-KAVGFMAAWKIPGVAPFAFCLFFTKLVSYTFLYWLPF 306
Query: 312 YIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPAL 371
Y+ H + G +LS +T+G LSTIFD+GGV GG+LAG ISD + RA+T+ F+ L+IPAL
Sbjct: 307 YVSHNMIGGEYLSEETSGNLSTIFDVGGVVGGVLAGYISDQLNGRAITAAGFMYLAIPAL 366
Query: 372 VLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAII 431
LYR +G IS+ N+ LMF SG+ + GP++LITTAV+ADLGT +KGN+RALATV+AII
Sbjct: 367 FLYRVFGHISLTINVILMFTSGVFIIGPFALITTAVSADLGTHKSLKGNARALATVSAII 426
Query: 432 DGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRIVKAEIREKL 484
DGTGSVGAA+GP+L GYIS W++VF+ML+ + L +G+ L +++ AE++ L
Sbjct: 427 DGTGSVGAAIGPVLTGYISAISWDAVFYMLMTAALISGLLLTKLIIAEVKALL 479
|
|
| TAIR|locus:2129176 G3Pp4 "AT4G17550" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
Identities = 240/443 (54%), Positives = 306/443 (69%)
Query: 57 VKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDL 116
VK +G D L GW PFNG DGT RLGE+D+AFL YS+GMY AGH+GD++DL
Sbjct: 85 VKREIGD-IDEVLLHRKSKGWEPFNGKDGTSRLGEIDVAFLACYSIGMYVAGHLGDSLDL 143
Query: 117 RLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGK 176
RLFL +GM+GSG F +FG+ Y+ ++H +F+ +Q+ GLFQ+ GWP VVAV+GNWFGK
Sbjct: 144 RLFLTWGMIGSGFFVGLFGMGYFWNIHAFWFFLVMQMAAGLFQATGWPSVVAVVGNWFGK 203
Query: 177 AKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSXXXXXXXXXXXXXXXXXXXXXRPE 236
KRGLIMG+WN+HTS+GNI GS++A+GVLE+GWGWS PE
Sbjct: 204 RKRGLIMGIWNAHTSVGNICGSLIAAGVLEYGWGWSFIAPGFVMSLGGVLVYLFLAAYPE 263
Query: 237 DLGF-EL---PGK--------EVELMNVEN--GDKVE-NXXXXXXXXXXXXXXQAIGFLE 281
D+GF ++ GK E E VE G VE + +++G L+
Sbjct: 264 DVGFPDINSNSGKFIKRKRDVEEEEEEVEEDLGTDVEGDGEGSSGSGSGYENKRSVGLLQ 323
Query: 282 AWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVF 341
A +P V PFA CLFFSKLVAYTFLYWLPFY+ T + G ++S KTAG LST+FD+GG+
Sbjct: 324 ACMIPGVIPFALCLFFSKLVAYTFLYWLPFYLSQTTIGGEYVSVKTAGNLSTLFDVGGIV 383
Query: 342 GGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYS 401
GGIL G ISD +ARA T+ AF+ +IPA+++Y +YG +S NI LM ++GL VNGPY+
Sbjct: 384 GGILCGYISDKFKARATTAAAFMYAAIPAMLVYHSYGGVSQTVNILLMMVAGLFVNGPYA 443
Query: 402 LITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFML 461
LITTAV+ADLGT ++G+SRALATVTAIIDGTGS GAALGPLL G++ST GW +VF+ML
Sbjct: 444 LITTAVSADLGTHKSLQGDSRALATVTAIIDGTGSAGAALGPLLTGFLSTLGWQAVFYML 503
Query: 462 IVSILFAGMFLIRIVKAEIREKL 484
+V L AG+ L R+V AEIREKL
Sbjct: 504 VVGALCAGLLLTRLVIAEIREKL 526
|
|
| ZFIN|ZDB-GENE-040426-1949 slc37a2 "solute carrier family 37 (glycerol-3-phosphate transporter), member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
Identities = 221/485 (45%), Positives = 292/485 (60%)
Query: 11 SLAPGLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGS-- 68
SLAPG+ L + + +++ + L +TF Y S+H SRKP SIVKS L
Sbjct: 3 SLAPGIKLITSFSRDS----WYRFSILFLTFVFYTSYHLSRKPISIVKSQLHRNCSNVVH 58
Query: 69 ----NLRSNDP--GWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVF 122
N+ ND W PF+G + + G LD FL +Y+VGM+F+G G+ + LR +L
Sbjct: 59 PANLNITDNDTWCDWVPFDGKNYQNLFGVLDNCFLVAYAVGMFFSGIFGERLPLRYYLST 118
Query: 123 GMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLI 182
GM+ SGLFT +FGL ++ +H L Y+ VQ GL Q+ GWP VVA +GNWFGK KRG I
Sbjct: 119 GMLLSGLFTALFGLGFYWQIHSLWYYCLVQALNGLVQTTGWPAVVACVGNWFGKGKRGFI 178
Query: 183 MGVWNSHTSIGNIIGSVLASGVLEFGWGWSXXXXXXXXXXXXXXXXXXXXXRPEDLGFEL 242
MGVWNSHTS+GNI+GS++A + WG S RPED+
Sbjct: 179 MGVWNSHTSVGNILGSLIAGVYVSSAWGLSFIVPGIIIASTGVICFLFLVERPEDVNCTA 238
Query: 243 PG--KEVE----LMNVENGDKVENXXXXXXXXXXXXXXQAIGFLEAWKLPRVAPFAFCLF 296
P + VE L N +++ N +AI F A ++P V F+ CL
Sbjct: 239 PQHHERVEEEPLLRNSSTNEEIFNSHTSTAVEPVEDHSEAISFCGALRIPGVVEFSLCLL 298
Query: 297 FSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEAR 356
F+KLV+YTFLYWLP YI + A H K AG LST+FD+GG+ GGI+AGL+SD R
Sbjct: 299 FAKLVSYTFLYWLPLYIANVA----HFDPKKAGDLSTLFDVGGILGGIVAGLVSDYTGGR 354
Query: 357 AVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDL 416
A T A L+++ P L LY G + T + ++ G LVNGPY+LITTAV+ADLGT +
Sbjct: 355 ASTCCAMLIIAAPMLFLYNKIGQNGLPTTVGMLLWCGALVNGPYALITTAVSADLGTHEC 414
Query: 417 IKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRIV 476
++GNSRAL+TVTAIIDGTGS+GAA+GPLLAG IS GWN+VF+MLI + + A + L R+V
Sbjct: 415 LRGNSRALSTVTAIIDGTGSIGAAVGPLLAGLISPTGWNNVFYMLIAADVLACLLLSRLV 474
Query: 477 KAEIR 481
EIR
Sbjct: 475 YKEIR 479
|
|
| UNIPROTKB|E1C5M0 SLC37A2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
Identities = 221/479 (46%), Positives = 299/479 (62%)
Query: 11 SLAPGLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFD--GS 68
+LAPG+ L + ++ + +T LV+TF +Y S+H SRKP SIVKS L G+
Sbjct: 4 ALAPGVRLLRAVPRDSR---YRGLT-LVLTFLSYTSYHLSRKPISIVKSQLHLNCSALGT 59
Query: 69 NLR--SNDP---GWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFG 123
N SN WAPF+ + G LD AFL +Y++GM+ +G G+ + LR +L G
Sbjct: 60 NPHNDSNSTTWCSWAPFDQDNYKELFGALDNAFLVAYAIGMFISGIFGERLPLRYYLSGG 119
Query: 124 MMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIM 183
M+ SG+FT +FG Y+L++H+L Y++ VQ+ GL Q+ GWP VVA +GNWFGK KRGLIM
Sbjct: 120 MLLSGIFTALFGFGYFLNIHVLWYYIIVQVCNGLAQTTGWPSVVACVGNWFGKGKRGLIM 179
Query: 184 GVWNSHTSIGNIIGSVLASGVLEFGWGWSXXXXXXXXXXXXXXXXXXXXXRPEDLGFELP 243
G+WNSHTS+GNI+GS++A + WG S PED+G P
Sbjct: 180 GIWNSHTSVGNILGSLIAGAWVSSEWGLSFIVPGIIIAAVGIVCFFFLVEHPEDVGCN-P 238
Query: 244 GKEVELMNVENGDKVENXXXXXXXXXX-XXXXQAIGFLEAWKLPRVAPFAFCLFFSKLVA 302
+ + + ++ + V + +AI FL A ++P V F+ CL F+KLV+
Sbjct: 239 PLQHDASDEKDPEGVTSEDRSSTDPKEPAEELEAISFLGALRIPGVVEFSLCLLFAKLVS 298
Query: 303 YTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVA 362
YTFLYWLP YI + A H K AG LST+FD+GG+ GGI AGLISD RA T
Sbjct: 299 YTFLYWLPLYIVNVA----HFGAKEAGDLSTLFDVGGILGGIFAGLISDYTGGRATTCCV 354
Query: 363 FLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSR 422
L+++ P L LY G + T+I ++ + G LVNGPY+LITTAV+ADLGT + +KGN+R
Sbjct: 355 MLVVAAPMLFLYNHVGQNGIGTSIAMLIVCGALVNGPYALITTAVSADLGTHESLKGNAR 414
Query: 423 ALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRIVKAEIR 481
AL+TVTAIIDGTGSVGAALGPLLAG IS GWN+VF+MLI + + A + L R+V E+R
Sbjct: 415 ALSTVTAIIDGTGSVGAALGPLLAGLISPTGWNNVFYMLIAADVLACLLLARVVVKEVR 473
|
|
| UNIPROTKB|E1B9Q0 SLC37A1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 575 (207.5 bits), Expect = 1.0e-103, Sum P(3) = 1.0e-103
Identities = 117/205 (57%), Positives = 148/205 (72%)
Query: 276 AIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIF 335
AI F A K+P V F+ CL F+KLV+YTFL+WLP YI + HL K AG LST+F
Sbjct: 317 AISFTGALKIPGVIEFSLCLLFAKLVSYTFLFWLPLYITNVD----HLDVKKAGELSTLF 372
Query: 336 DIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLL 395
D+GG+FGGILAG+ISD +E RA T LLL+ P L + + + + I ++ LSG L
Sbjct: 373 DVGGIFGGILAGVISDRLEKRASTCGLMLLLAAPTLYAFSSISRMGLEATIAMLLLSGAL 432
Query: 396 VNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWN 455
V+GPY+LITTAV+ADLGT +KGNS ALATVTAIIDGTGSVGAALGPLLAG IS GWN
Sbjct: 433 VSGPYALITTAVSADLGTHKSLKGNSHALATVTAIIDGTGSVGAALGPLLAGLISPSGWN 492
Query: 456 SVFFMLIVSILFAGMFLIRIVKAEI 480
+VF+ML+ + A +FL+R++ E+
Sbjct: 493 NVFYMLMFADACALLFLVRLIHKEL 517
|
|
| UNIPROTKB|E2RMR9 SLC37A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 3.5e-103, Sum P(3) = 3.5e-103
Identities = 117/205 (57%), Positives = 149/205 (72%)
Query: 276 AIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIF 335
AI F A K+P V F+ CL F+KLV+YTFL+WLP YI + HL + AG LST+F
Sbjct: 316 AISFTGALKIPGVIEFSLCLLFAKLVSYTFLFWLPLYITNVD----HLDARQAGELSTLF 371
Query: 336 DIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLL 395
D+GG+FGGILAG+ISD +E RA T LLL+ P L ++ T + + I ++ LSG L
Sbjct: 372 DVGGIFGGILAGVISDRLEKRASTCGLMLLLAAPTLYIFSTISKMGLEATIAMLLLSGAL 431
Query: 396 VNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWN 455
V+GPY+LITTAV+ADLGT +KGNS ALATVTAIIDGTGSVGAALGPLLAG +S GWN
Sbjct: 432 VSGPYALITTAVSADLGTHKSLKGNSHALATVTAIIDGTGSVGAALGPLLAGLLSPSGWN 491
Query: 456 SVFFMLIVSILFAGMFLIRIVKAEI 480
+VF+ML+ + A +FLIR++ E+
Sbjct: 492 NVFYMLMFADACALLFLIRLIHKEL 516
|
|
| UNIPROTKB|J9P5Y6 SLC37A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 3.5e-103, Sum P(3) = 3.5e-103
Identities = 117/205 (57%), Positives = 149/205 (72%)
Query: 276 AIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIF 335
AI F A K+P V F+ CL F+KLV+YTFL+WLP YI + HL + AG LST+F
Sbjct: 315 AISFTGALKIPGVIEFSLCLLFAKLVSYTFLFWLPLYITNVD----HLDARQAGELSTLF 370
Query: 336 DIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLL 395
D+GG+FGGILAG+ISD +E RA T LLL+ P L ++ T + + I ++ LSG L
Sbjct: 371 DVGGIFGGILAGVISDRLEKRASTCGLMLLLAAPTLYIFSTISKMGLEATIAMLLLSGAL 430
Query: 396 VNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWN 455
V+GPY+LITTAV+ADLGT +KGNS ALATVTAIIDGTGSVGAALGPLLAG +S GWN
Sbjct: 431 VSGPYALITTAVSADLGTHKSLKGNSHALATVTAIIDGTGSVGAALGPLLAGLLSPSGWN 490
Query: 456 SVFFMLIVSILFAGMFLIRIVKAEI 480
+VF+ML+ + A +FLIR++ E+
Sbjct: 491 NVFYMLMFADACALLFLIRLIHKEL 515
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7SY29 | SPX2_DANRE | No assigned EC number | 0.4742 | 0.9315 | 0.9372 | yes | no |
| Q9SL56 | GLPT5_ARATH | No assigned EC number | 0.7219 | 0.9557 | 0.9634 | yes | no |
| Q5M7K3 | SPX2_XENTR | No assigned EC number | 0.4541 | 0.9315 | 0.9278 | yes | no |
| Q8TED4 | SPX2_HUMAN | No assigned EC number | 0.4757 | 0.9215 | 0.9141 | yes | no |
| Q9WU81 | SPX2_MOUSE | No assigned EC number | 0.4870 | 0.8853 | 0.8782 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 497 | |||
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 3e-46 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 7e-31 | |
| TIGR00712 | 438 | TIGR00712, glpT, glycerol-3-phosphate transporter | 2e-26 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 6e-21 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 6e-20 | |
| PRK11663 | 434 | PRK11663, PRK11663, regulatory protein UhpC; Provi | 1e-19 | |
| PRK09556 | 467 | PRK09556, uhpT, sugar phosphate antiporter; Review | 8e-18 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 9e-18 | |
| PRK11273 | 452 | PRK11273, glpT, sn-glycerol-3-phosphate transporte | 6e-17 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 5e-12 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 6e-07 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 2e-06 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 7e-06 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-04 | |
| TIGR00894 | 465 | TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph | 1e-04 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 3e-04 | |
| TIGR02332 | 412 | TIGR02332, HpaX, 4-hydroxyphenylacetate permease | 0.001 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.002 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 3e-46
Identities = 126/456 (27%), Positives = 193/456 (42%), Gaps = 50/456 (10%)
Query: 33 QITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGEL 92
+I + F YA+F+ +RK ++ L D G + +LG L
Sbjct: 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPAL----------IEDGGLS-------KTQLGIL 69
Query: 93 DLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQ 152
AF +Y V + G + D + R F+ FG++ S + I+FG L F +
Sbjct: 70 GSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGF-----SPSLFLFAVLW 124
Query: 153 IFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWN-SHTSIGNIIGSV--LASGVLEFGW 209
+ G FQ +GWP + +WF + +RG +WN SH G + V LA GW
Sbjct: 125 VLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGW 184
Query: 210 GWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESG 269
+F PG + I V + + L RP+ G LP E E E +E L
Sbjct: 185 RAAFYFPGIIAIIVALILLFLLRDRPQSEG--LPPIE-EYRGDPLEIYEEEKENEGL--- 238
Query: 270 SSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAG 329
+ I K + A F +V Y W P Y+ S A
Sbjct: 239 ---TAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVK----GFSLVKAN 291
Query: 330 ILSTIFDIGGVFGGILAGLISDMIEA--RAVTSVAFLLLSIPALVLYRTYGSISMITNIP 387
++F++ G+ G +LAG +SD + R ++ F+LL +LVLY + S + +
Sbjct: 292 WAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAI 351
Query: 388 LMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSV-GAALGPLLA 446
L+F+ G L+ GP LI A AA+ + A T T + + GAAL L
Sbjct: 352 LLFIIGFLIYGPQMLIGLA-AAEFVPKK-------AAGTATGFVGLFAYLIGAALAGLPL 403
Query: 447 GYIS-TRGWNSVFFMLIVSILFAGMFLIRIVKAEIR 481
GYI+ T GW+ F +L ++ L A + L+ + AE R
Sbjct: 404 GYIADTWGWDGGFIVLSIAALLAILLLLPVWNAEER 439
|
Length = 448 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 7e-31
Identities = 97/375 (25%), Positives = 161/375 (42%), Gaps = 32/375 (8%)
Query: 89 LGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYF 148
LG L +F +Y + + G V D + R+FL G++ + + FG + L V ++
Sbjct: 32 LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWA 91
Query: 149 VGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGS--VLASGVLE 206
G+FQ +GWP + WF +++RG + WN ++G + VL
Sbjct: 92 -----LNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL 146
Query: 207 FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLL 266
+ W W F++PG + I V + FL L P+ G LP E E+ N E E +E L
Sbjct: 147 YSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCG--LPPAE-EMPNEEPDGDAEKKEEEL- 202
Query: 267 ESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHK 326
+ + I + + F +V L W P Y+ S +
Sbjct: 203 ------TKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEK----GFSKE 252
Query: 327 TAGILSTIFDIGGVFGGILAGLISDMI--EARAVTSVAFLLLSIPALVLYRTYGSISMIT 384
A T++++GG+ G +LAG +SD + R +V F+ L I +L++Y + + +
Sbjct: 253 KASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLM 312
Query: 385 NIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPL 444
++ +F G LV GP LI A++L +A T + +G L L
Sbjct: 313 DLICLFALGFLVYGPQMLIGVI-ASELAP-------KKAAGTAAGFVGFFAYLGGILAGL 364
Query: 445 LAGYISTR-GWNSVF 458
GY++ GW F
Sbjct: 365 PLGYLADGFGWAGAF 379
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 2e-26
Identities = 92/387 (23%), Positives = 162/387 (41%), Gaps = 25/387 (6%)
Query: 99 SYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLF 158
+Y + G V D + R+FL G++ S ++ G W + + + FV + + G F
Sbjct: 73 AYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFL-NGWF 131
Query: 159 QSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGS--VLASGVLEFGWGWSFVLP 216
Q +GWP + +W+ +++RG I+ +WN +IG I VL W + P
Sbjct: 132 QGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFP 191
Query: 217 GFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQA 276
I V +F F + P+ G LP E E N D E E L + +
Sbjct: 192 AICAIIVALFAFAMMRDTPQSCG--LPPIE-EYRNDYPDDYNEKAEQEL-------TAKE 241
Query: 277 IGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFD 336
I + A F L+ Y L W P Y++ H + + +++
Sbjct: 242 IFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVK----HFALDKSSWAYFLYE 297
Query: 337 IGGVFGGILAGLISDMI--EARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGL 394
G+ G +L G +SD + R T V F+ L A+++Y + + + ++ M + G
Sbjct: 298 YAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGF 357
Query: 395 LVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGW 454
L+ GP LI A +L + G + + + G+ + A +G + + GW
Sbjct: 358 LIYGPVMLIGLH-ALELAPKK-AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF----GW 411
Query: 455 NSVFFMLIVSILFAGMFLIRIVKAEIR 481
+ F ++I + A + LI ++ E R
Sbjct: 412 DGGFMVMIGGSILAVILLIVVMIGEKR 438
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar [Transport and binding proteins, Other]. Length = 438 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 6e-21
Identities = 92/393 (23%), Positives = 154/393 (39%), Gaps = 41/393 (10%)
Query: 95 AFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIF 154
AF Y VG + G + D R L ++ G+FT + A V +++
Sbjct: 37 AFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG-----AYVSLYILRVL 91
Query: 155 CGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-EFGWGWSF 213
G ++ +P ++ ++ +WF ++R + ++NS +G IIG L +L F W W+F
Sbjct: 92 LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAF 151
Query: 214 VLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGS 273
++ G L I GV F+ P+ + E E V G E + G
Sbjct: 152 IIEGVLGIIWGVLWLKFIPDPPQKAKWL---TEEEKYIVVGGLLAEQQGKGPSTPKKY-- 206
Query: 274 LQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILST 333
E K RV A F + FL W P Y+ LS AG +++
Sbjct: 207 ----QIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERG----LSILEAGFMAS 258
Query: 334 IFDIGGVFGGILAGLISD--------MIEARAVTSVAFLLLSIPALVLYRTYGSISMITN 385
+ I G G IL G +SD ++ AR +A L+LS+ + N
Sbjct: 259 LPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMF--------ATNYVN 310
Query: 386 IPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLL 445
IP L+ + + A + D GN L +I+ G++G +GP++
Sbjct: 311 IPYAALALVALGFFGLGAGAIGWALI--SDNAPGNIAGLT--GGLINSLGNLGGIVGPIV 366
Query: 446 AGYI--STRGWNSVFFMLIVSILFAGMFLIRIV 476
G I +T + ++ L + + +V
Sbjct: 367 IGAIAATTGSFAGALMVVAALALIGALSYLLLV 399
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 6e-20
Identities = 72/350 (20%), Positives = 128/350 (36%), Gaps = 44/350 (12%)
Query: 95 AFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIF 154
AF Y++ AG + D R L+ G++ L ++ A L + + +++
Sbjct: 40 AFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWL-----LLVLRVL 94
Query: 155 CGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE-FGWGWSF 213
GL +P A++ +WF +RG +G+ ++ +G +G +L + FGW +F
Sbjct: 95 QGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAF 154
Query: 214 VLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGS 273
++ L + V L L P + P +E
Sbjct: 155 LILAILALLAAVLAALLLPRPPPESKRPKPAEEAP------------------------- 189
Query: 274 LQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILST 333
+ + V L + L +LP Y + LS AG+L
Sbjct: 190 APLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEV-----LGLSALLAGLLLG 244
Query: 334 IFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSG 393
+ + G G +L G +SD + R +A LLL + AL L + S + + + L G
Sbjct: 245 LAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLG 304
Query: 394 LLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGP 443
+ + V+ T + + + GS+G ALGP
Sbjct: 305 FGAGLVFPALNALVSDLAPK--------EERGTASGLYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|183266 PRK11663, PRK11663, regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 1e-19
Identities = 102/415 (24%), Positives = 175/415 (42%), Gaps = 57/415 (13%)
Query: 89 LGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYF 148
+G L F +Y V + +G V D + R F+ G++ +G+ I+FG S L F
Sbjct: 60 IGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGF----SSSLWA-F 114
Query: 149 VGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWN-SHTSIGNIIGSVLASGVLEF 207
+ + FQ GWP +L W+ + +RG +WN +H G +I V+ + L +
Sbjct: 115 ALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY 174
Query: 208 GWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGK----EVELMNVENGDKVENEEV 263
GW + ++ G + I VG+F+ L +P+ +G G+ +EL + G + +E+
Sbjct: 175 GWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEI 234
Query: 264 GLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHL 323
L L P + +F +V W Y+ T + +
Sbjct: 235 ----------LTKYVLLN----PYIWLLSFSYVLVYVVRAAINDWGNLYMSET----LGV 276
Query: 324 SHKTAGILSTIFDIGGVFGGILAGLISDMI--EARAVTSVAF---LLLSIPALVLYRTYG 378
TA ++F++GG G ++AG SD + R ++ F +LLS+ +L L
Sbjct: 277 DLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF-- 334
Query: 379 SISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVG 438
S + F G V GP LI A AA+ ++ A A TG VG
Sbjct: 335 -ASYVMQAACFFTIGFFVFGPQMLIGMA-AAECSHKE---------AAGAA----TGFVG 379
Query: 439 --AALGPLLAGY-----ISTRGWNSVFFMLIVSILFAGMFLIRIVKAEIREKLNE 486
A LG L+GY + W F ++ ++ + + L+ + A+ + +E
Sbjct: 380 LFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPREASE 434
|
Length = 434 |
| >gnl|CDD|236564 PRK09556, uhpT, sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 8e-18
Identities = 110/421 (26%), Positives = 162/421 (38%), Gaps = 65/421 (15%)
Query: 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLL 145
T LG + L F +Y VG G+ D + + FL F ++ S + + FG + L
Sbjct: 63 TTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSL 122
Query: 146 VYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWN-SHTSIGNIIGSVLASGV 204
+ + G FQS G PC + + W + KRG +G WN SH +G A GV
Sbjct: 123 GLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHN-----LGGAGAGGV 177
Query: 205 LEFGW--------GWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGD 256
+G F+ P + + +G + PE+LG+ GK E+
Sbjct: 178 ALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGW---GKAEEIF-----G 229
Query: 257 KVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLY--------W 308
+ +EE ES Q + L + C A FLY W
Sbjct: 230 EPISEEDKETESTDMTKWQ---IFVEYVLKNPVIWLLC------FANIFLYIVRIGIDNW 280
Query: 309 LPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEA-RAVTSVAFLLLS 367
P Y A + S + A T+F+IG + G +L G +SD+ RA+ + L L
Sbjct: 281 SPVY----AFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALI 336
Query: 368 IPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLI-----------TTAVAADL-GTQD 415
I L +Y+ S M +F G LV GP LI VA + GT
Sbjct: 337 IFTLGVYQHATSEYMYLAS--LFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFA 394
Query: 416 LIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRI 475
+ G+S A + I D T + G L GW F L ++ + L+ I
Sbjct: 395 YLFGDSFAKVGLGMIADPTKNGTPIFGYTL------TGWAGTFAALDIA-AIGCICLMAI 447
Query: 476 V 476
V
Sbjct: 448 V 448
|
Length = 467 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 9e-18
Identities = 79/384 (20%), Positives = 153/384 (39%), Gaps = 74/384 (19%)
Query: 95 AFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIF 154
AF Y++G AG++ D R L+ G++ L +++ A L + +
Sbjct: 42 AFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-----SSLWLLLVGRFL 96
Query: 155 CGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE-FGWGWSF 213
GL +P A++ WF +RG +G++++ +G ++G +L + E GW W F
Sbjct: 97 LGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLF 156
Query: 214 VLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGS 273
++ ++ + + + L +
Sbjct: 157 LILA--ILGLLLALLLLFL----------------------------------------- 173
Query: 274 LQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILST 333
L + A F Y L +LP Y++ LS AG+L +
Sbjct: 174 -----------LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVL----GLSAAEAGLLLS 218
Query: 334 IFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSG 393
+F +GG+ G +L GL+SD + R + + LLL+ L+L S++++ + + L G
Sbjct: 219 LFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALL--LVALLLLG 276
Query: 394 LLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRG 453
+ + + T + + A T + + + GS+G ALGPLLAG + G
Sbjct: 277 FGLGFAFPALLTLASELAPPE--------ARGTASGLFNTFGSLGGALGPLLAGLLLDTG 328
Query: 454 WNSVFFMLIVSILFAGMFLIRIVK 477
F+++ ++ L+ ++
Sbjct: 329 GYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|236889 PRK11273, glpT, sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 6e-17
Identities = 96/391 (24%), Positives = 160/391 (40%), Gaps = 29/391 (7%)
Query: 99 SYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLF 158
+Y + G V D + R+FL G++ + + G W + + V FV + CG F
Sbjct: 75 AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV-LLFLCGWF 133
Query: 159 QSIGWPCVVAVLGNWFGKAKRGLIMGVWN-SHTSIGNIIGSVLASGVLEFG-WGWSFVLP 216
Q +GWP + +W+ + +RG I+ VWN +H G + + G+ F W + +P
Sbjct: 134 QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMP 193
Query: 217 GFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQA 276
F I V +F F + P+ G LP E E N D E E L + +
Sbjct: 194 AFAAILVALFAFAMMRDTPQSCG--LPPIE-EYKNDYPDDYNEKHEQEL-------TAKQ 243
Query: 277 IGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFD 336
I + A F L+ Y L W P Y++ H + + +++
Sbjct: 244 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVK----HFALDKSSWAYFLYE 299
Query: 337 IGGVFGGILAGLISDMI--EARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGL 394
G+ G +L G +SD + R T V F+ L A ++Y + + ++ M + G
Sbjct: 300 YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGF 359
Query: 395 LVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGP-LLAGY-ISTR 452
L+ GP LI G L +A T G +G ++ + GY +
Sbjct: 360 LIYGPVMLI--------GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 411
Query: 453 GWNSVFFMLIVSILFAGMFLIRIVKAEIREK 483
GW+ F ++I + A + LI ++ E R
Sbjct: 412 GWDGGFMVMIGGSILAVILLIVVMIGEKRHH 442
|
Length = 452 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 87/352 (24%), Positives = 145/352 (41%), Gaps = 25/352 (7%)
Query: 102 VGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSI 161
G F G + D I R L++ ++ +FT++ LA LL+ + GL
Sbjct: 67 FGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALA-TNVTQLLIL----RFLAGLGLGG 121
Query: 162 GWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-EFGWGWSFVLPGFLV 220
P + A++ + K RG +G+ IG +G LA ++ FGW F + G
Sbjct: 122 LMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAP 181
Query: 221 IFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGS--SGSLQAIG 278
+ + + + FL + L + P ++N + L E +
Sbjct: 182 LLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFK 241
Query: 279 FLEAWKLPRVAPFAFCLFFSKLVAYTFLY-WLPFYIRHTAVAGVHLSHKTAGILSTIFDI 337
L K R+ + L+F LV FL WLP + S A +F+
Sbjct: 242 ALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELG-----FSLSLAATGGALFNF 296
Query: 338 GGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVN 397
GGV G I+ G ++D + R + LL ++ A+++ T S +++ + L ++G VN
Sbjct: 297 GGVIGSIIFGWLADRLGPRVTALL-LLLGAVFAVLVGSTLFSPTLL--LLLGAIAGFFVN 353
Query: 398 GPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYI 449
G S + +A RA AI G G +GA +GP+LAGY+
Sbjct: 354 GGQSGLYALMA------LFYPTAIRATGVGWAI--GIGRLGAIIGPILAGYL 397
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 6e-07
Identities = 46/200 (23%), Positives = 73/200 (36%), Gaps = 16/200 (8%)
Query: 291 FAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLIS 350
F + L LP Y+ + +S G+L T F +G LAG +S
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAED----LGISPTEIGLLLTAFSLGYALAQPLAGRLS 56
Query: 351 DMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAAD 410
D R V + LL ++ L+L ++ L L GL + +A
Sbjct: 57 DRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLV---LRVLQGLGGGALFPAAAALIA-- 111
Query: 411 LGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAG 469
D R A ++ +GAALGPLL G +++ GW + F +L + L A
Sbjct: 112 ----DWFPPEERGRA--LGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAA 165
Query: 470 MFLIRIVKAEIREKLNEGKW 489
+ ++ E
Sbjct: 166 VLAALLLPRPPPESKRPKPA 185
|
Length = 346 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 67/383 (17%), Positives = 127/383 (33%), Gaps = 55/383 (14%)
Query: 99 SYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLF 158
++G + ++ R L+ + + ++ LA +V LL+ + G+F
Sbjct: 60 GVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAV-LLLARALAGLAHGVF 118
Query: 159 QSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGV-LEFGWGWSFVLPG 217
SI ++ KRG + + + ++ ++G L + + FGW +F
Sbjct: 119 WSIAAALAARLVP----PGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATF---- 170
Query: 218 FLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAI 277
+ + + L L LP E+ S +
Sbjct: 171 LAIAVLALLALLLLW-------KLLPPSEIS------------------GSLPGPLRTLL 205
Query: 278 GFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDI 337
L + F YT YIR + S ++ F I
Sbjct: 206 RLLRRPGVLLGLLATFLFMTGHFALYT-------YIRPFLESVAGFSVSAVSLVLLAFGI 258
Query: 338 GGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVN 397
G G +L G ++D R A LLL++ L L T+ S + L+FL G +
Sbjct: 259 AGFIGNLLGGRLAD-RGPRRALIAALLLLALALLAL--TFTGASPALALALLFLWGFAFS 315
Query: 398 GPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNS 456
+ T +A A ++ ++G ALG L G + G+ +
Sbjct: 316 PALQGLQTRLARLAP---------DAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAA 366
Query: 457 VFFMLIVSILFAGMFLIRIVKAE 479
++ +L A + + + +
Sbjct: 367 TGWVGAALLLLALLLALLSARKD 389
|
Length = 394 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 7e-06
Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 106 FAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165
+G + D + L+ G+ L T +F L S ++ V + + G +
Sbjct: 17 LSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL----SSNITVLIIA-RFLQGFGAAFALVA 71
Query: 166 VVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEF-GWGWSFVLPGFLVIFVG 224
A++ + + +RG+ +G+ ++ ++G ++G L + +F GW F+ L +
Sbjct: 72 GAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAF 131
Query: 225 VFVFLFL 231
+ + L
Sbjct: 132 ILLAFLL 138
|
Length = 141 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 71/388 (18%), Positives = 140/388 (36%), Gaps = 29/388 (7%)
Query: 102 VGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSI 161
+G FAG +GD + L+ G + + ++ G A + VG ++ GL
Sbjct: 61 IGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAK--GKSFYMLIVG-RVIVGLGVGG 117
Query: 162 GWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVI 221
V + K RG + ++ + G ++ +++ G+ ++ + +P L
Sbjct: 118 ISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQF 177
Query: 222 FVGVFVFLFLVVRPED------LGFELPGKEV--ELMNVENGDKVENEEVGLLESG-SSG 272
+ + + L+ PE G + V +L V + D+ EE LE +
Sbjct: 178 VPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAE 237
Query: 273 SLQAIGFLEAWKLPRVAPFAF-CLFFSKLVAYTFLYWLPFYIRHTA-VAGVHLSHKTAGI 330
+ + + F +L +++ I T ++ L G+
Sbjct: 238 KASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGV 297
Query: 331 LSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYG-SISMITNIPLM 389
++ +F +F G ++ A ++ FL+L + L + ++ G I I I L
Sbjct: 298 VNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLF 357
Query: 390 FLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYI 449
L GP + + ++L + R A AI + L L I
Sbjct: 358 IAFFALGWGP---VPWVIVSELFPLGV-----RPKA--MAIATAANWLANFLIGFLFPII 407
Query: 450 STRGWNSVFF----MLIVSILFAGMFLI 473
+ VF +L++ ILF F+
Sbjct: 408 TGAIGGYVFLVFAGLLVLFILFVFFFVP 435
|
Length = 449 |
| >gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 81/420 (19%), Positives = 148/420 (35%), Gaps = 65/420 (15%)
Query: 96 FLTSYSVGMYF----AGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGV 151
L+S+ G G++ + + GM S + +I+ A + L+V
Sbjct: 81 ILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVV----- 135
Query: 152 QIFCGLFQSIGWPCVV----AVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-E 206
FC + Q + V ++ W +R ++G+ S +G I + SG L E
Sbjct: 136 --FCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFI-FLPISGWLCE 192
Query: 207 FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVG-- 264
GW + F ++ + F + P + K E + +
Sbjct: 193 SWGGWPMIFYVFGIVGCAWSLLWF------VFPADDPSIHPCI------SKFEKKYINSS 240
Query: 265 LLESGSSGSLQAIGFLEAWKLPRVAPFA--FCLFFSKLVAYTFLYWLPFYIRHTAVAGVH 322
L S LP A + F F+ + T+ LP +I +
Sbjct: 241 LQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTY---LPTFISWV----LR 293
Query: 323 LSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAV----------TSVAFLLLSIPALV 372
+S K G+LS++ + I AG ++D +++ + L I A
Sbjct: 294 VSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYA 353
Query: 373 LYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIID 432
L Y S + I ++ L+ + +GP + + + DL R L + I
Sbjct: 354 LP--YLSAAFYLTIIILTLANAVSSGPLAGVLIN-SLDLA--------PRFLGFIKGITG 402
Query: 433 GTGSVGAALGPLLAGYISTRG----WNSVFFMLIVSILFAGMFLIRIVKAEIREKLNEGK 488
G +G + LAG I ++ W VF ++ + +F + AE ++ E K
Sbjct: 403 LPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGSAERQDWAKEEK 462
|
[Transport and binding proteins, Anions]. Length = 465 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 20/156 (12%)
Query: 294 CLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMI 353
FF+ +V Y L WLP + + G LS AG++ F+IGG G +L G + D +
Sbjct: 228 SYFFTLIVLYFLLNWLP-----SLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL 282
Query: 354 EARAVTSVAF--LLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADL 411
R V + + +L S+ AL ++ + + F +GL V G S++
Sbjct: 283 RPRRVVLLIYAGILASLAALAAAPSFAGMLLAG-----FAAGLFVVGGQSVLYALAPLFY 337
Query: 412 GTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAG 447
TQ G A+A G +G+ GPLLAG
Sbjct: 338 PTQVRGTGVGAAVA--------VGRLGSMAGPLLAG 365
|
Length = 406 |
| >gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 64/310 (20%), Positives = 126/310 (40%), Gaps = 30/310 (9%)
Query: 151 VQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEF--- 207
++I G+ ++ P ++ L WF R ++ + +G +L+ +L
Sbjct: 102 LRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161
Query: 208 ----GWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEV 263
GW W F+L GF + +GV + +L P+ + + L + ++N+++
Sbjct: 162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEM-----IDNDQL 216
Query: 264 GLLESGSSGSLQAIGFLEAWK---LPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAG 320
L + + + A+ + P + + F W P ++
Sbjct: 217 TLEQPEGAFAHAAMPQRSMLREIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGS 276
Query: 321 VHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSI 380
S+ G+L+ I +FG I SD ++ R + L + +L
Sbjct: 277 ---SNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLL------- 326
Query: 381 SMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQD-LIKGNSRALATVTAIIDGTGSVGA 439
+ T+ L+ L G+++ S +A+A T D I +RA+A A+I+ TG++G+
Sbjct: 327 ASATDHNLIQLLGIIMASMGSF--SAMAIFWTTPDQSISLQARAIAI--AVINATGNIGS 382
Query: 440 ALGPLLAGYI 449
AL P L G +
Sbjct: 383 ALSPFLIGIL 392
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 12/158 (7%)
Query: 322 HLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSIS 381
LS AG++ + F +G G +LAG +SD R V + LL ++ +L+L
Sbjct: 30 GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWL 89
Query: 382 MITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAAL 441
++ FL G L G A+ A+ + + +GA L
Sbjct: 90 LLV---GRFLLG-LGGGALYPAAAALIAEWFP-------PKERGRALGLFSAGFGLGALL 138
Query: 442 GPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRIVKA 478
GPLL G ++ GW +F +L + L + L+ +++
Sbjct: 139 GPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRL 176
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 497 | |||
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 100.0 | |
| PRK10054 | 395 | putative transporter; Provisional | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 100.0 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 100.0 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 100.0 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.98 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.98 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.97 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.97 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.97 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.97 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.97 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.97 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.96 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.96 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.96 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.96 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.96 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.95 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.95 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.94 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.94 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.92 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.92 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.92 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.91 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.91 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.9 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.9 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.9 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.9 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.9 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.89 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.88 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.88 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.85 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.85 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.85 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.84 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.81 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.81 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.8 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.79 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.72 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.67 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.61 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.6 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.56 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.54 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.53 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.51 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.5 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.48 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.48 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.47 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.45 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.45 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.45 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.44 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.44 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.44 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.43 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.43 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.43 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.43 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.42 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.41 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.41 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.4 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.4 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.4 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.4 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.4 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.39 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.38 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.38 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.37 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.37 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.37 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.37 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.36 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.36 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.36 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.36 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.35 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.35 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.35 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.34 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.34 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.33 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.33 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.33 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.33 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.32 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.32 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.31 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.31 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.3 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.3 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.3 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.29 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.29 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.29 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.28 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.28 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.28 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.26 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.25 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.25 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.25 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.24 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.24 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.22 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.21 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.21 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.2 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.19 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.19 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.19 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.19 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.17 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.15 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.15 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.14 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.12 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.12 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 99.12 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.11 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.11 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.09 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.09 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.09 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.09 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.08 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.07 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.04 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.04 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 99.03 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.03 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.02 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.01 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.99 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.98 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.97 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.97 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.97 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.95 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.94 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.94 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.93 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.93 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.93 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.92 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.9 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.9 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.89 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.85 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.83 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.81 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.8 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.79 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.74 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.7 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.68 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.67 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.66 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.61 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.6 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.6 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.59 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.58 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.56 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.54 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.52 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.48 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.46 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.41 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.37 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.37 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.33 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.32 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.28 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.24 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.21 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.19 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.14 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.13 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.12 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.94 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.91 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 97.88 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.88 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.84 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.7 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.64 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.58 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 97.41 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.38 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.38 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.21 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.13 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.13 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.06 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.04 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.04 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.97 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.95 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.94 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.6 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.47 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.29 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.2 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.71 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 95.09 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.14 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 93.94 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 92.07 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 91.89 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 91.51 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 91.3 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 89.57 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 88.88 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 88.31 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 82.58 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 81.52 | |
| PF02990 | 521 | EMP70: Endomembrane protein 70; InterPro: IPR00424 | 80.02 |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=352.47 Aligned_cols=412 Identities=29% Similarity=0.490 Sum_probs=355.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHh
Q 010904 26 NKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMY 105 (497)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~ 105 (497)
++..++.|+.++...++++...|+.|.+++...|.+.+|. ++| .+|+|++.+++.+.|.++..
T Consensus 20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~----------~ls-------k~~lG~i~s~f~i~YG~sKf 82 (448)
T COG2271 20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDG----------GLS-------KTQLGILGSAFSITYGVSKF 82 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhc----------CCC-------HHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999998 788 99999999999999999999
Q ss_pred hccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHH
Q 010904 106 FAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGV 185 (497)
Q Consensus 106 ~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 185 (497)
+.|.++||.+.|+.+..++++.++.+++++++ ++.+.+.++.++.|..+|..+|++...++.|+|++|||+..++
T Consensus 83 ~~G~~sDr~npr~fm~~gLilsai~nil~Gfs-----~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~si 157 (448)
T COG2271 83 VMGVLSDRSNPRYFMAFGLILSAIVNILFGFS-----PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSI 157 (448)
T ss_pred HhhhhcccCCCceeehHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEE
Confidence 99999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHh--hhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCcccccc
Q 010904 186 WNSHTSIGNIIGSVLA--SGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEE 262 (497)
Q Consensus 186 ~~~~~~~G~~~g~~~~--~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (497)
++.+-++|..+.|++. +.+. +.+||..|++.++++++.+++.++..+|+|+....++-++-. +++.+.+.
T Consensus 158 Wn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~-------~d~~e~~~ 230 (448)
T COG2271 158 WNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYR-------GDPLEIYE 230 (448)
T ss_pred ehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhh-------cCchhhhh
Confidence 9999999999999888 7776 569999999999999999999999999999987665544322 11111100
Q ss_pred ccccccCCC-CchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhh
Q 010904 263 VGLLESGSS-GSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVF 341 (497)
Q Consensus 263 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~ 341 (497)
+ +.+.+ ......-.+.+++||.+|.++++..+.+.+-+++..|.|.|+.|. +|+|..+++...+.+-+++++
T Consensus 231 ~---~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~----k~~s~~~a~~a~~lfE~agl~ 303 (448)
T COG2271 231 E---EKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEV----KGFSLVKANWAISLFEVAGLP 303 (448)
T ss_pred h---hccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh----cCCCHHHHHHHHHHHHHHhhH
Confidence 0 00011 223344567789999999999999999999999999999999999 999999999999999999999
Q ss_pred hhhhhHHhHHhh--hhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhccccccccc
Q 010904 342 GGILAGLISDMI--EARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKG 419 (497)
Q Consensus 342 ~~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (497)
|++++||+|||+ |||....+.+.+.....++.....+..+.+...++++.+|+...+..-.+-....|..|.
T Consensus 304 G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK------ 377 (448)
T COG2271 304 GTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK------ 377 (448)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH------
Confidence 999999999997 677777666666555555555555555678888899999999999886666666666663
Q ss_pred ccchhHHHHHHHhhhhhh-hhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010904 420 NSRALATVTAIIDGTGSV-GAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRIVKAEIR 481 (497)
Q Consensus 420 ~~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (497)
+..|++.|+...++++ |.+.+....|++.|. ||...|++..+..+++.+++....+.+++
T Consensus 378 --~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~~~~~ 439 (448)
T COG2271 378 --KAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWNAEER 439 (448)
T ss_pred --hhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHhhcch
Confidence 7779999999999999 999999999999999 99999999999998888877776654443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=342.69 Aligned_cols=409 Identities=22% Similarity=0.323 Sum_probs=314.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhc
Q 010904 28 TLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFA 107 (497)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~ 107 (497)
...+..+.++.+++++++..+.++..+++..|.+.+|+ |++ ..+.|++.+++.+++.+++++.
T Consensus 22 ~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~----------~~s-------~~~~g~~~s~~~~~~~~~~~~~ 84 (467)
T PRK09556 22 MWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTY----------GLS-------TTELGMIGLGFSITYGVGKTLV 84 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhc----------CCC-------HHHHHHHHHHHHHHHHHHHhhh
Confidence 34566777888999999999999999999999999999 888 9999999999999999999999
Q ss_pred cccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHH
Q 010904 108 GHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWN 187 (497)
Q Consensus 108 g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 187 (497)
|+++||+|||+++..+.++++++.++.++......++++.+++.|+++|++.+...|...++++||+|+++|++++|++.
T Consensus 85 G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~ 164 (467)
T PRK09556 85 GYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWN 164 (467)
T ss_pred hhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeee
Confidence 99999999999999998888888777665211112899999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHhhhHhh-c---CcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccc
Q 010904 188 SHTSIGNIIGSVLASGVLE-F---GWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEV 263 (497)
Q Consensus 188 ~~~~~G~~~g~~~~~~l~~-~---gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (497)
.+.++|.++++++..++.+ . +||..|.+.+++.++.+++.+++.+++|++....+.++. ..+...+++ +
T Consensus 165 ~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~------~~~~~~~~~-~ 237 (467)
T PRK09556 165 ISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEI------FGEPISEED-K 237 (467)
T ss_pred cccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhc------ccCccchhh-h
Confidence 9999999999988876653 2 599999998988888777777777877765432221110 000000000 0
Q ss_pred cccccCCCCchhhhh-HHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhh
Q 010904 264 GLLESGSSGSLQAIG-FLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFG 342 (497)
Q Consensus 264 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~ 342 (497)
+ .++++...... .+..+++|.+|...+..++.....++...|+|.|+++. +|++..+++.......++.+++
T Consensus 238 ~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~----~g~s~~~a~~~~~~~~~~~~ig 310 (467)
T PRK09556 238 E---TESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQE----LGFSKEDAINTFTLFEIGALVG 310 (467)
T ss_pred c---cccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCCCHHHHHHHHHHHHHHHHHH
Confidence 0 00000011111 23478999999999999888888888999999999987 8999999999999999999999
Q ss_pred hhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccc
Q 010904 343 GILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSR 422 (497)
Q Consensus 343 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (497)
.++.|+++||+++|+..........+....+.. ....+.....+..++.|++..+..........+.+|+ +
T Consensus 311 ~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~--------~ 381 (467)
T PRK09556 311 SLLWGWLSDLANGRRALVACIALALIIFTLGVY-QHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPK--------K 381 (467)
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch--------h
Confidence 999999999999988766554443333222222 1123444444566667765444443334555677775 4
Q ss_pred hhHHHHHHHhhhhhh-hhhhhhcccceeec------------c-CchHHHHHHHHHHHHHHHHHHHHH
Q 010904 423 ALATVTAIIDGTGSV-GAALGPLLAGYIST------------R-GWNSVFFMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 423 ~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~------------~-g~~~~~~~~~~~~~~~~~~~~~~~ 476 (497)
.+|++.|+.+..+++ |.+++|.+.|++.| . +|+..|.+..++.+++.+..+...
T Consensus 382 ~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 382 AIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred hHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999997 77999999999999 4 899999998888888777666554
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=311.57 Aligned_cols=375 Identities=18% Similarity=0.250 Sum_probs=324.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccc
Q 010904 33 QITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGD 112 (497)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d 112 (497)
.+..+..+.++.|...........++|++.+|+ |++ ..+.|++.|.|.++.++++++...+.|
T Consensus 11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl----------~vs-------~~~aG~lis~yAl~~ai~ap~l~~lt~ 73 (394)
T COG2814 11 MWLALLALALAAFAIGTTEFVPVGLLPPIAADL----------GVS-------EGAAGQLITAYALGVALGAPLLALLTG 73 (394)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHhchHHHHHHc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555666666666777777888999999999 999 999999999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhh
Q 010904 113 TIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSI 192 (497)
Q Consensus 113 r~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 192 (497)
|+.||++++..+.++.+++++++++ +||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..+
T Consensus 74 r~~Rr~lLl~~l~lFi~~n~l~alA-----p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tl 148 (394)
T COG2814 74 RLERRRLLLGLLALFIVSNLLSALA-----PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTL 148 (394)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHH
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCC
Q 010904 193 GNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSS 271 (497)
Q Consensus 193 G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (497)
+.++|.++|.++.+ +|||+.|++.+.++++..+..+..+| |++.....
T Consensus 149 A~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~----------------------------- 197 (394)
T COG2814 149 ATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSL----------------------------- 197 (394)
T ss_pred HHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCC-----------------------------
Confidence 99999999999995 89999999999999999888899998 22211111
Q ss_pred CchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHH
Q 010904 272 GSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISD 351 (497)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d 351 (497)
.....+..+++|+|+++...+..++.....+..++|+..++++. .|++....+++...++++.++|+.++|++.|
T Consensus 198 -~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v----~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~d 272 (394)
T COG2814 198 -PGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESV----AGFSVSAVSLVLLAFGIAGFIGNLLGGRLAD 272 (394)
T ss_pred -CcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHc----cCCCHhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 11122356899999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHH
Q 010904 352 MIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAII 431 (497)
Q Consensus 352 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 431 (497)
| +.|+.+.....+..+..+.+.+. ..+.+......+++|+..............+..| ++...+.+++
T Consensus 273 r-~~~~~l~~~~~l~a~~~l~l~~~--~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p---------~~~~~a~sl~ 340 (394)
T COG2814 273 R-GPRRALIAALLLLALALLALTFT--GASPALALALLFLWGFAFSPALQGLQTRLARLAP---------DAADLAGSLN 340 (394)
T ss_pred c-cchhHHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC---------CchHHHHHHH
Confidence 9 88888888777777777766554 2444666666677888877766666666665333 3448999999
Q ss_pred hhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHHHh
Q 010904 432 DGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 432 ~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
....++|..+|..++|.+.|+ |+....++.++..+++.++.....+
T Consensus 341 ~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 341 VAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999 9999999999998888877766544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=326.59 Aligned_cols=402 Identities=21% Similarity=0.406 Sum_probs=302.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcc
Q 010904 29 LIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAG 108 (497)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (497)
.++.++.+...++++++..++++..++...|.+.+++ |++ ..+.|++.+.+.+++.+++++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~s-------~~~~g~~~~~~~~~~~~~~~~~G 79 (434)
T PRK11663 17 YRYWRRHILITMYLGYALFYFTRKSFNAAMPEMLADL----------GLS-------RSDIGLLATLFYITYGVSKFVSG 79 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhc----------CCC-------HHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456667777888889999999989999999999999 888 99999999999999999999999
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHH
Q 010904 109 HVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNS 188 (497)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 188 (497)
++.||+|||+++.++.++.+++.++++++ ++++.+++.|++.|++.|..++...+++.|++|+++|++++++++.
T Consensus 80 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~ 154 (434)
T PRK11663 80 IVSDRSNARYFMGIGLIATGIINILFGFS-----SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNT 154 (434)
T ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccc
Q 010904 189 HTSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLE 267 (497)
Q Consensus 189 ~~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (497)
+.++|..+++.+++.+. .+|||+.|++.+++.++..++..+++||+|++.......+.. .+.+...+.
T Consensus 155 ~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~------~~~~~~~~~----- 223 (434)
T PRK11663 155 AHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWR------HDALELAQQ----- 223 (434)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccc------ccccccchh-----
Confidence 99999999999999888 579999999998887776666667778876543211111000 000000000
Q ss_pred cCCCCchhhhhH-HHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhh
Q 010904 268 SGSSGSLQAIGF-LEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILA 346 (497)
Q Consensus 268 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~ 346 (497)
.+.+..+.+..+ ...+++|.+|...+..++..........|+|.|+++. +|++..+++...+...++.++++++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~g~s~~~a~~~~~~~~~~~~~g~~~~ 299 (434)
T PRK11663 224 QEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSET----LGVDLVTANSAVSMFELGGFIGALVA 299 (434)
T ss_pred ccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000011111 2367889999888888877777778889999999876 79999999999999999999999999
Q ss_pred HHhHHhh--hhhhHH-HHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccch
Q 010904 347 GLISDMI--EARAVT-SVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRA 423 (497)
Q Consensus 347 g~l~dr~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (497)
|+++||+ ++|+.. ........+....+... ...+........+..|++..+..........+..|+ +.
T Consensus 300 g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~ 370 (434)
T PRK11663 300 GWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM-PFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHK--------EA 370 (434)
T ss_pred hhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc-ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccH--------hh
Confidence 9999998 333332 22222222122221111 122233333334444544333222333444555554 55
Q ss_pred hHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHHH
Q 010904 424 LATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 424 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 476 (497)
+|++.|+.+...++|++++|.+.|++.|. ||+..|+..+++.+++.+..+...
T Consensus 371 ~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK11663 371 AGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFL 424 (434)
T ss_pred HHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999998 999999999888887766555443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=322.54 Aligned_cols=397 Identities=17% Similarity=0.253 Sum_probs=295.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccc
Q 010904 31 FHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHV 110 (497)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l 110 (497)
+.+|.++.+++++++++++|+.+++...|.+.+|+ |++ ..+.|++.+++.+++.+++++.|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~----------~~s-------~~~~g~~~s~~~~~~~~~~~~~g~l 66 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDL----------GLS-------ATMFGLAATLFYAAYVICGIPSNIM 66 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhc----------CCC-------HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45778888999999999999999999999999999 888 9999999999999999999999999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHh
Q 010904 111 GDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHT 190 (497)
Q Consensus 111 ~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 190 (497)
.||+|||+++..+++++++++++++++ +|++.+++.|+++|++.+...|....++.|++|+++|++++++++.+.
T Consensus 67 ~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~ 141 (412)
T TIGR02332 67 LAIIGARRWIAGIMVLWGIASTATMFA-----TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAM 141 (412)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhHhh-------cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccc
Q 010904 191 SIGNIIGSVLASGVLE-------FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEV 263 (497)
Q Consensus 191 ~~G~~~g~~~~~~l~~-------~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (497)
++|..+++++++.+.+ .|||+.|++.++++++..++.++++||+|++.+...++++.........++.+.+..
T Consensus 142 ~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 221 (412)
T TIGR02332 142 PVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQP 221 (412)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhcccccccc
Confidence 9999999999988763 589999999999988877778888899886533211111110000000000000000
Q ss_pred cccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhh
Q 010904 264 GLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGG 343 (497)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~ 343 (497)
+ ....+........+++++ +|.+|...+..++.....+.+.+|+|.++++. +.|++..+++.......++.+++.
T Consensus 222 ~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~---~~~~s~~~~~~~~~~~~l~~~~g~ 296 (412)
T TIGR02332 222 E-GAFAHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSF---NQGSSNIMIGLLAAIPQFCTIFGM 296 (412)
T ss_pred c-cccccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCcHHHhHHHhhHHHHHHHHHH
Confidence 0 000000111122344444 68888888888888888889999999999883 146788899999999999999999
Q ss_pred hhhHHhHHhhhhhhHH-HHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccc
Q 010904 344 ILAGLISDMIEARAVT-SVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSR 422 (497)
Q Consensus 344 ~~~g~l~dr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (497)
++.|+++||+++|+.. .....+..+.. ++.... . +.......+.+.+++.....+.......+.+|+ +
T Consensus 297 l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~ 365 (412)
T TIGR02332 297 IWWSRHSDRLKERKHHTALPYLFAAAGW-LLASAT-D-HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISL--------Q 365 (412)
T ss_pred HHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHhc-C-CHHHHHHHHHHHHHHhhhhhhHHHhhcccccch--------H
Confidence 9999999999877653 33333333322 222211 1 212222222222222222222222222333443 5
Q ss_pred hhHHHHHHHhhhhhhhhhhhhcccceeecc--CchHHHHHHHHHH
Q 010904 423 ALATVTAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFMLIVSI 465 (497)
Q Consensus 423 ~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~~~~ 465 (497)
.++++.|+.+...++|++++|.+.|.+.|. +|+..+++.++..
T Consensus 366 ~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 366 ARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 569999999999999999999999999997 5888887766644
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=318.33 Aligned_cols=412 Identities=17% Similarity=0.190 Sum_probs=306.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCC------------CCCCCCCCCCCCCCCCccchhhHHHH
Q 010904 29 LIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNL------------RSNDPGWAPFNGPDGTHRLGELDLAF 96 (497)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~g~~~s~~ 96 (497)
..+.||.+..++++++.+++.|+.+++...+.+.++-++.+. .+.+++++ ..+.|++.+.+
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-------~~~~g~~~s~~ 85 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWS-------GALQGLILSSH 85 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCC-------HHHhhHHHHHH
Confidence 567788899999999999999999999999988774221100 01134555 89999999999
Q ss_pred HHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCc
Q 010904 97 LTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGK 176 (497)
Q Consensus 97 ~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 176 (497)
.+++.+++++.|+++||+|||+++..+.++++++.+++.++. ..+++.+++.|+++|++.+...|....+++||+|+
T Consensus 86 ~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~ 162 (465)
T TIGR00894 86 FYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA---GGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPP 162 (465)
T ss_pred HHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH---HcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCH
Confidence 999999999999999999999999999999999988876540 14588899999999999999999999999999999
Q ss_pred ccchhhHHHHHHHhhhHHHHHHHHhhhHhh--cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhcc
Q 010904 177 AKRGLIMGVWNSHTSIGNIIGSVLASGVLE--FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVEN 254 (497)
Q Consensus 177 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 254 (497)
++|++++++...+..+|..+++++++.+.+ .|||+.|++.++++++..++.+.+.+|+|+.....+++++. ...+
T Consensus 163 ~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~i~~-- 239 (465)
T TIGR00894 163 KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKK-YINS-- 239 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHH-HHHh--
Confidence 999999999999999999999999998884 39999999999998887777777777777644322222111 0000
Q ss_pred CCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhh
Q 010904 255 GDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTI 334 (497)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 334 (497)
. .++ +.+..+.+..+++++++|.+|...+..++.....+.+.+|+|.|+++. +|++..+.++..++
T Consensus 240 -~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~----~g~s~~~~g~~~~~ 305 (465)
T TIGR00894 240 -S-LQG--------QKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWV----LRVSGKENGLLSSL 305 (465)
T ss_pred -h-ccc--------ccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCcChHHhHHHHHH
Confidence 0 000 000111223578899999999999999999999999999999999998 89999999999999
Q ss_pred hhhhhhhhhhhhHHhHHhhhhhhHH--------HHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHH
Q 010904 335 FDIGGVFGGILAGLISDMIEARAVT--------SVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTA 406 (497)
Q Consensus 335 ~~~~~~~~~~~~g~l~dr~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 406 (497)
..++.+++.+++|+++||+++|+.. .............+.......+....+..+.+.+.+.+...+.....
T Consensus 306 ~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 385 (465)
T TIGR00894 306 PYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLIN 385 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhc
Confidence 9999999999999999998654221 11111111111111111111233333444444444444443333333
Q ss_pred HHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc----CchHHHHHHHHHHHHHHHHHHHHH
Q 010904 407 VAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR----GWNSVFFMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~ 476 (497)
..+..| +.+|.+.|+.+..+.+++.++|.+.|++.+. +|...|.+.++..+++.++.....
T Consensus 386 ~~~~~~---------~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 386 SLDLAP---------RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred hhhcCh---------hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 333332 4569999999999999999999999998875 377888888888887776655443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=316.23 Aligned_cols=413 Identities=22% Similarity=0.391 Sum_probs=300.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcc
Q 010904 29 LIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAG 108 (497)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (497)
.++++|.++..+++.+...+.++..++...|.+.++ |++ ..+.|++.+.+.+++.+++++.|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-----------g~s-------~~~~g~~~~~~~i~~~~~~~~~G 84 (452)
T PRK11273 23 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-----------GFS-------RGDLGFALSGISIAYGFSKFIMG 84 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-----------CCC-------HHHHHHHHHHHHHHHHHHHhhhh
Confidence 455667777777788888888888888888888764 677 89999999999999999999999
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHH
Q 010904 109 HVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNS 188 (497)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 188 (497)
+++||+|||++++++.++.+++.++++++.. ...+++.+++.|++.|++.+..++.....+.|++|+++|++++++++.
T Consensus 85 ~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 163 (452)
T PRK11273 85 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPW-ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC 163 (452)
T ss_pred hhhhccCCchhHHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHH
Confidence 9999999999999999999999998887510 013788899999999999999988888899999999999999999999
Q ss_pred HhhhHHH-HHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCcccccccccc
Q 010904 189 HTSIGNI-IGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLL 266 (497)
Q Consensus 189 ~~~~G~~-~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (497)
+.++|.. .+|+++..+. ..+||+.|++.+++.++..++.++++||+|++...+++++.. .+..+...
T Consensus 164 ~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---- 232 (452)
T PRK11273 164 AHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYK-------NDYPDDYN---- 232 (452)
T ss_pred HHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhh-------hccccccc----
Confidence 9999874 4555543333 459999999999888887777778888877653221111100 00000000
Q ss_pred ccCCCCchhhhh-HHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhh
Q 010904 267 ESGSSGSLQAIG-FLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGIL 345 (497)
Q Consensus 267 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~ 345 (497)
+.++++.+.+.. ...++|+|.+|...+..++.....+....|+|.|+++. +|++..+++.+..+..++.+++.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~----~g~s~~~~~~~~~~~~~~~~~g~~~ 308 (452)
T PRK11273 233 EKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV----KHFALDKSSWAYFLYEYAGIPGTLL 308 (452)
T ss_pred cccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000001111111 23477899999998888888888888899999999987 7999999999989999999999999
Q ss_pred hHHhHHhh--hhhhHHH-HHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccc
Q 010904 346 AGLISDMI--EARAVTS-VAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSR 422 (497)
Q Consensus 346 ~g~l~dr~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (497)
.|+++||+ +||+... ....+..++.+.+.. ....+.+.....++..|+...+..........+.+|+ +
T Consensus 309 ~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--------~ 379 (452)
T PRK11273 309 CGWMSDKVFRGNRGATGVFFMTLVTIATIVYWL-NPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPK--------K 379 (452)
T ss_pred HHHHHHHHccCCcchHHHHHHHHHHHHHHHHHH-hcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh--------h
Confidence 99999999 4444322 222222222222222 1122333333445555554433333334455677776 4
Q ss_pred hhHHHHHHHhhhhhhhhhh-hhcccceeecc-CchHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 010904 423 ALATVTAIIDGTGSVGAAL-GPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRIVKAEIREKL 484 (497)
Q Consensus 423 ~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (497)
.+|+++|+.+...++|+.+ +|.+.|++.|. ||+..|.+.++.++++.+......+.|+|+++
T Consensus 380 ~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (452)
T PRK11273 380 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRHHE 443 (452)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 4599999999998898765 79999999998 99999999988888887777766665555443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=309.63 Aligned_cols=352 Identities=16% Similarity=0.161 Sum_probs=286.8
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHH
Q 010904 53 PPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTI 132 (497)
Q Consensus 53 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~ 132 (497)
....+.|.+.+|+ |++ ..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++
T Consensus 27 ~~~~~~~~l~~~~----------~~s-------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 89 (390)
T PRK03545 27 VPVGLLSDIAQSF----------HMQ-------TAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHV 89 (390)
T ss_pred HHHcchHHHHhHc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 3455679999999 888 99999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh-hcCcce
Q 010904 133 IFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-EFGWGW 211 (497)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~gwr~ 211 (497)
+++++ +|++.+++.|+++|++.+...+...+++.|++|+++|+++++++..+.++|..+||++++.+. ..|||+
T Consensus 90 ~~~~~-----~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~ 164 (390)
T PRK03545 90 LSALA-----WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRT 164 (390)
T ss_pred HHHHh-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHH
Confidence 99998 999999999999999999989999999999999999999999999999999999999999887 479999
Q ss_pred eeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHH
Q 010904 212 SFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPF 291 (497)
Q Consensus 212 ~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (497)
.|++.++++++..+..+..+||.|++++ + .....++.+|+|.++..
T Consensus 165 ~f~~~~~~~~l~~~~~~~~~~~~~~~~~------~----------------------------~~~~~~~~~~~~~~~~~ 210 (390)
T PRK03545 165 TFLAIGGGALITLLLLIKLLPLLPSEHS------G----------------------------SLKSLPLLFRRPALVSL 210 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCc------c----------------------------hHHHHHHHHhCcHHHHH
Confidence 9999998888776666666665432110 0 11234678899988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHH
Q 010904 292 AFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPAL 371 (497)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 371 (497)
....++.....+....+.+.++++. +|+++.+.+.......++.++++++.++++||+++|.. ..+..+..++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~----~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~ 285 (390)
T PRK03545 211 YLLTVVVVTAHFTAYSYIEPFVQQV----AGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLL 285 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----cCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHH
Confidence 7666666666666677888888887 79999999999999999999999999999999988764 344444444433
Q ss_pred HHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeec
Q 010904 372 VLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYIST 451 (497)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 451 (497)
.+... ..+.+...+..++.|++.....+.....+.+..| +.+++++|+++...++|..+||.+.|++.|
T Consensus 286 ~l~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~ 354 (390)
T PRK03545 286 LLLPA--ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP---------DATDVAMALFSGIFNIGIGAGALLGNQVSL 354 (390)
T ss_pred HHHHH--hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC---------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33221 2345555667777788776665666666655543 233889999999999999999999999999
Q ss_pred c-CchHHHHHHHHHHHHHHHHHHHHH
Q 010904 452 R-GWNSVFFMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 452 ~-g~~~~~~~~~~~~~~~~~~~~~~~ 476 (497)
+ +++..|...+++.+++.+......
T Consensus 355 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 355 HLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 8 999999999888888777766554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=309.61 Aligned_cols=384 Identities=20% Similarity=0.250 Sum_probs=302.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcc
Q 010904 29 LIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAG 108 (497)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (497)
..+++|.++.++++..+.++++....+...|.+.+|+ +++ +.+.|++.+.+.++..+++++.|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~s-------~~~~g~~~~~~~~~~~~~~~~~g 71 (406)
T PRK11551 9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEF----------GLD-------VAQMGWAFSAGILGLLPGALLGG 71 (406)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCC-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3558888999999999999999999999999999999 888 99999999999999999999999
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHH
Q 010904 109 HVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNS 188 (497)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 188 (497)
+++||+|||+++..+.++.+++.++++++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.
T Consensus 72 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 146 (406)
T PRK11551 72 RLADRIGRKRILIVSVALFGLFSLATAQA-----WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYC 146 (406)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccc
Q 010904 189 HTSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLE 267 (497)
Q Consensus 189 ~~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (497)
+..+|..+++.+++.+. ..+||+.|++.+++.++..++...++||+|++...+..+++
T Consensus 147 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------------- 205 (406)
T PRK11551 147 GVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQ--------------------- 205 (406)
T ss_pred HHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchh---------------------
Confidence 99999999999988776 47899999998887777666666777886653221100000
Q ss_pred cCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhH
Q 010904 268 SGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAG 347 (497)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 347 (497)
+++......+..+.+..+......++.....+....|.|.++++ .|+++.+.+.......++.+++.++.|
T Consensus 206 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g 276 (406)
T PRK11551 206 ----RAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-----QGLSRSQAGLVQIAFNIGGALGSLLIG 276 (406)
T ss_pred ----hhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCChhhhhHHHHHHHHHHHHHHHHHH
Confidence 00000001111112233444444455555666777889999987 599999999999999999999999999
Q ss_pred HhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHH
Q 010904 348 LISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATV 427 (497)
Q Consensus 348 ~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 427 (497)
+++||+++|+.+........++.+.+... .+.+...+..++.|++.++..+.......+.+|++ .+|++
T Consensus 277 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~--------~~g~~ 345 (406)
T PRK11551 277 ALMDRLRPRRVVLLIYAGILASLAALAAA---PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQ--------VRGTG 345 (406)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchh--------hhhhh
Confidence 99999999988877655555544443332 34445555666778777777778888888888864 44999
Q ss_pred HHHHhhhhhhhhhhhhcccceeecc--CchHHHHHHHHHHHHHHHHHHHH
Q 010904 428 TAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 428 ~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
.|+.+....+|..++|.+.|++.++ ++...++......+++.++.+..
T Consensus 346 ~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 346 VGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred hhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987 55556666655555555544433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=314.82 Aligned_cols=392 Identities=16% Similarity=0.162 Sum_probs=276.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchh--hHHHHHHHHHHHHhhccccc
Q 010904 34 ITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGE--LDLAFLTSYSVGMYFAGHVG 111 (497)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~s~~~~~~~~~~~~~g~l~ 111 (497)
+.++.++.++++++++|...++...|.+.+++ +.+ .++....++. +.++..+++.++++++|+++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~----------~~~---~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~ 81 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVF----------FPG---ADPSVQMIAALATFSVPFLIRPLGGLFFGMLG 81 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------CCC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778899999999999999999999987 432 1100111222 25788899999999999999
Q ss_pred cccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHH--------HHHHHHHhhhhhcccchhhhhhhhcccCcccchhhH
Q 010904 112 DTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVY--------FVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIM 183 (497)
Q Consensus 112 dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 183 (497)
||+|||+++.++++++++++++++++ +|++. ++++|+++|++.|..++...++++|++|+++|+++.
T Consensus 82 Dr~Grr~~l~~~~~l~~i~~~~~a~~-----~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~ 156 (490)
T PRK10642 82 DKYGRQKILAITIVIMSISTFCIGLI-----PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMG 156 (490)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHH
Confidence 99999999999999999999999998 88764 899999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHhhhHh---------hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhcc
Q 010904 184 GVWNSHTSIGNIIGSVLASGVL---------EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVEN 254 (497)
Q Consensus 184 ~~~~~~~~~G~~~g~~~~~~l~---------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 254 (497)
++...+..+|..+|+.+...+. ++|||++|++.+++.++ .++....+||+|++....++.++
T Consensus 157 ~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~-------- 227 (490)
T PRK10642 157 SWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQ-------- 227 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhh--------
Confidence 9999988888888876654432 36999999997766554 35555677887764311100000
Q ss_pred CCccccccccccccCCCCchhhhhHHHHhhC-CchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHH
Q 010904 255 GDKVENEEVGLLESGSSGSLQAIGFLEAWKL-PRVAPF-AFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILS 332 (497)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 332 (497)
.+.+ .. .+..+.++++++++ ++.+.. ....++....++....|+|.|+++. +|++..+.+...
T Consensus 228 -~~~~----~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~g~s~~~~~~~~ 292 (490)
T PRK10642 228 -GDRE----GL------QDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHN----LHYSEDHGVLII 292 (490)
T ss_pred -hccc----cc------cccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHH
Confidence 0000 00 00011234455542 222222 2233445567778889999999876 799988888888
Q ss_pred hhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcc
Q 010904 333 TIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLG 412 (497)
Q Consensus 333 ~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 412 (497)
....++.+++.++.|+++||+|||+.+..+.....+....+.......+....++..++.|++.+...........+.+|
T Consensus 293 ~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p 372 (490)
T PRK10642 293 IAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFP 372 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 88889999999999999999999998877665444333222221112334444455555666655555666677778888
Q ss_pred cccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc--CchHHHHHHHHHHHHHHHHHHHH
Q 010904 413 TQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 413 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
++. ||++.|+.+....+++.++|.+.+++.+. ++...++...+..+++.+..++.
T Consensus 373 ~~~--------Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 373 THI--------RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred Ccc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 744 48989986666777788999999998775 45555555555555555544443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=322.89 Aligned_cols=413 Identities=16% Similarity=0.181 Sum_probs=312.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcc
Q 010904 29 LIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAG 108 (497)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (497)
.++++|.++++++++.+...++...++.++|.+.+++ +++ ..+.+++.+++.++.+++++++|
T Consensus 161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~----------gls-------~~~~g~l~s~~~lG~iiG~li~G 223 (742)
T TIGR01299 161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDL----------CIP-------DSGKGMLGLIVYLGMMVGAFFWG 223 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCC-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888899999999999888999999999998 887 89999999999999999999999
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHH
Q 010904 109 HVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNS 188 (497)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 188 (497)
+++||+|||+++++++++.++++++++++ ++++.++++|++.|++.++..+...+++.|++|+++|++.++++..
T Consensus 224 ~LsDR~GRR~~lii~lil~~i~~ll~afa-----~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~ 298 (742)
T TIGR01299 224 GLADKLGRKQCLLICLSVNGFFAFFSSFV-----QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCM 298 (742)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHhhhHh-h-------------cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhh-hhhc
Q 010904 189 HTSIGNIIGSVLASGVL-E-------------FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVEL-MNVE 253 (497)
Q Consensus 189 ~~~~G~~~g~~~~~~l~-~-------------~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~ 253 (497)
++.+|.++++.++..+. . .+||+.|++.++++++. ++..+++||+|++...+.+.+++.. .+.+
T Consensus 299 ~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrwL~~~gr~~eA~~iL~~i 377 (742)
T TIGR01299 299 FWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRFFLENGKHDEAWMILKLI 377 (742)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHCCCHHHHHHHHHHH
Confidence 99999999998776654 2 25899888877766554 6677889999998765555544421 1111
Q ss_pred cCCccc-----ccc-------ccc-----cccCCCCc--------h-------hhhhHHHHhhCC---chHHHHHHHHHH
Q 010904 254 NGDKVE-----NEE-------VGL-----LESGSSGS--------L-------QAIGFLEAWKLP---RVAPFAFCLFFS 298 (497)
Q Consensus 254 ~~~~~~-----~~~-------~~~-----~~~~~~~~--------~-------~~~~~~~~~~~~---~~~~~~~~~~~~ 298 (497)
...... ... ... .+.+.... + ....++++++.+ +.+.+.+.+++.
T Consensus 378 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~ 457 (742)
T TIGR01299 378 HDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTL 457 (742)
T ss_pred hcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 111000 000 000 00000000 0 001244444433 335666778888
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc-------------------------------c------CC-----C------------
Q 010904 299 KLVAYTFLYWLPFYIRHTAVAG-------------------------------V------HL-----S------------ 324 (497)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------~------g~-----s------------ 324 (497)
.+.++++..|+|.++++.-..+ + |+ +
T Consensus 458 ~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (742)
T TIGR01299 458 SFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFD 537 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhccccccccccccccccccee
Confidence 8899999999998865410000 0 00 0
Q ss_pred --------------------------------------------------------cchhhHHHhhhhhhhhhhhhhhHH
Q 010904 325 --------------------------------------------------------HKTAGILSTIFDIGGVFGGILAGL 348 (497)
Q Consensus 325 --------------------------------------------------------~~~~g~~~~~~~~~~~~~~~~~g~ 348 (497)
.........+..++.+++.+++|+
T Consensus 538 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~ 617 (742)
T TIGR01299 538 DVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSAL 617 (742)
T ss_pred eccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001233455677899999999999
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHH
Q 010904 349 ISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVT 428 (497)
Q Consensus 349 l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 428 (497)
++||+|||+++..+.++.+++++++.+. .+....++..++.+++.++.++....++++.+|++. |++++
T Consensus 618 L~Dr~GRr~~l~~~~~lsai~~ll~~~~---~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~--------Rgta~ 686 (742)
T TIGR01299 618 LMDKIGRLRMLAGSMVLSCISCFFLSFG---NSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDK--------RATAF 686 (742)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH--------HHHHH
Confidence 9999999999988888888877666543 233444555567777777788888899999999744 49999
Q ss_pred HHHhhhhhhhhhhhhcccceeeccCchHHHHHHHHHHHHHHHHHHHH
Q 010904 429 AIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 429 g~~~~~~~~g~~~~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
|+.+....+|.+++|.+.|.+.+.+...+|++.+++.++++++.+.+
T Consensus 687 Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~L 733 (742)
T TIGR01299 687 GFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKL 733 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998877766777888877777766665544
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=314.26 Aligned_cols=386 Identities=17% Similarity=0.173 Sum_probs=308.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccc
Q 010904 33 QITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGD 112 (497)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d 112 (497)
+|.++..++++.+....|...++...|.+.+|+ |.+ ..+.+|+.+.|.+++.++++++|+++|
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l----------~~s-------~~~~~~~~~~~~l~~~~~~~~~G~l~D 66 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTL----------GAS-------GNELLWIIDIYSLVMAGMVLPMGALGD 66 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCC-------HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999999999999 888 899999999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhccc-CcccchhhHHHHHHHhh
Q 010904 113 TIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWF-GKAKRGLIMGVWNSHTS 191 (497)
Q Consensus 113 r~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~ 191 (497)
|+|||++++++.+++++++++++++ +|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++.....
T Consensus 67 ~~Grk~~l~~~~~~~~~~~~~~~~a-----~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~ 141 (495)
T PRK14995 67 RIGFKRLLMLGGTLFGLASLAAAFS-----PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGS 141 (495)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 99999999999999999999888888887776 67899999999999999
Q ss_pred hHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhh--------hhhhccCCcccccc
Q 010904 192 IGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVE--------LMNVENGDKVENEE 262 (497)
Q Consensus 192 ~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 262 (497)
+|..+||.+++.+. +.||||.|++...++++..++..+++||++++...+.+..... ......+.......
T Consensus 142 ~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~ 221 (495)
T PRK14995 142 GGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLS 221 (495)
T ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCc
Confidence 99999999999998 4799999999988888777777777887654322222111100 00000000000000
Q ss_pred cc-c-------------cccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchh
Q 010904 263 VG-L-------------LESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTA 328 (497)
Q Consensus 263 ~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 328 (497)
.. . ....+.+.+.+....+++|+|.++...+..++.....++...++|.|+++. +|+++.++
T Consensus 222 ~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v----~g~s~~~a 297 (495)
T PRK14995 222 LWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFV----HGLSPLEA 297 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHH
Confidence 00 0 000011122233346789999998888888888888888889999999998 89999999
Q ss_pred hHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHH
Q 010904 329 GILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVA 408 (497)
Q Consensus 329 g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 408 (497)
|+...+..++..++.++.|++.||+++|+.+..+..+..++...+.......+.+......++.|++.+...+.......
T Consensus 298 g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~ 377 (495)
T PRK14995 298 GMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIM 377 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887777777666555443333334455566777889988888888888888
Q ss_pred hhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc
Q 010904 409 ADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR 452 (497)
Q Consensus 409 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 452 (497)
+.+|++ +++.+.++.+...++|+.+|+.+.|.+.++
T Consensus 378 ~~~~~~--------~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 378 AAAPPE--------KAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred hcCCHH--------hcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888764 448999999999999999999988887653
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=306.52 Aligned_cols=383 Identities=14% Similarity=0.075 Sum_probs=270.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchh---hHHHHHHHHHHHHh
Q 010904 29 LIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGE---LDLAFLTSYSVGMY 105 (497)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~s~~~~~~~~~~~ 105 (497)
.+++++..+..++++++++++|+..++.+.|.+.+|+ +.++.+ ..+.+. +.+...++..++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~----------~~~~~~----~~~~~~~~~~~~~~~~~~~ig~~ 81 (432)
T PRK10406 16 DTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIF----------FPSGNT----TTQLLQTAGVFAAGFLMRPIGGW 81 (432)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCCCc----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777888899999999999999999999987 321111 343334 44445555559999
Q ss_pred hccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHH--------HHHHHHHHHhhhhhcccchhhhhhhhcccCcc
Q 010904 106 FAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLL--------VYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKA 177 (497)
Q Consensus 106 ~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~--------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 177 (497)
++|+++||+|||+++..+.+++++++++++++ +++ ..++++|+++|++.|..++...+++.|++|++
T Consensus 82 ~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 156 (432)
T PRK10406 82 LFGRIADKHGRKKSMLISVCMMCFGSLVIACL-----PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEG 156 (432)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhc-----CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC
Confidence 99999999999999999999999999999987 554 47999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhhhHHHHHHHHhhhHh---------hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhh
Q 010904 178 KRGLIMGVWNSHTSIGNIIGSVLASGVL---------EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVE 248 (497)
Q Consensus 178 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~---------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 248 (497)
+|+++.++...+...|.++++.+...+. ++|||++|++.++++++. +.....+||+|+.+. +.
T Consensus 157 ~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~~~~------~~- 228 (432)
T PRK10406 157 RKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETSQQET------RA- 228 (432)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCchHHH------hh-
Confidence 9999999999888888888887665543 479999999887776654 333444555433210 00
Q ss_pred hhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcccCCCcch
Q 010904 249 LMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFS-KLVAYTFLYWLPFYIRHTAVAGVHLSHKT 327 (497)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 327 (497)
.++..++++++++|+.+...+...+. ....+.+..|+|.|+++. +|++..+
T Consensus 229 ------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~----~g~s~~~ 280 (432)
T PRK10406 229 ------------------------LKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT----AGMHANV 280 (432)
T ss_pred ------------------------hcccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHH
Confidence 00012356788888887766655543 666778889999999887 7999989
Q ss_pred hhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHh-hccCchhHHHHHHHHHHhhhccCcchhHHHH
Q 010904 328 AGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYR-TYGSISMITNIPLMFLSGLLVNGPYSLITTA 406 (497)
Q Consensus 328 ~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 406 (497)
.+.......++..++.++.|+++||++||+.+.....+..+....... .....+.......+.+..+..+...+.....
T Consensus 281 ~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (432)
T PRK10406 281 ASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGIL 360 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888999999999999998876665544333322211 1111222222222222222222233445566
Q ss_pred HHhhcccccccccccchhHHHHHHHhhhhhh-hhhhhhcccceeeccC-chHHHHHHHHHHHHHHHHHHH
Q 010904 407 VAADLGTQDLIKGNSRALATVTAIIDGTGSV-GAALGPLLAGYISTRG-WNSVFFMLIVSILFAGMFLIR 474 (497)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~g-~~~~~~~~~~~~~~~~~~~~~ 474 (497)
..|.+|++. |+++.|+.+..+++ .+...|.+.+.+.+.+ +...++..++..+++.+..+.
T Consensus 361 ~~e~fp~~~--------r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 361 KAEMFPAQV--------RALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHCCCCc--------cchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 778888744 49999999887664 3445777777553334 555666666666666555444
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=297.90 Aligned_cols=375 Identities=12% Similarity=0.156 Sum_probs=288.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccc
Q 010904 33 QITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGD 112 (497)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d 112 (497)
.|.....++.+.+.... ....++..|.+.+|+ |++ ..+.|++.+.+.+++.+++++.|+++|
T Consensus 8 ~~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~----------~~s-------~~~~g~~~s~~~~~~~l~~~~~g~l~d 69 (393)
T PRK09705 8 NFMLLVLVLIGLNMRPL-LTSVGPLLPQLRQAS----------GMS-------FSVAALLTALPVVTMGGLALAGSWLHQ 69 (393)
T ss_pred HHHHHHHHHHHHHcchh-hhccchhHHHHHHHh----------CCC-------HHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44444444444443322 266788999999999 998 999999999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhh
Q 010904 113 TIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSI 192 (497)
Q Consensus 113 r~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 192 (497)
|+|||+++..+..+++++.++++++ +|++.+++.|+++|++.+...+....++.+++| ++|+++++++..+..+
T Consensus 70 r~G~r~~l~~~~~l~~~~~~~~~~a-----~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~ 143 (393)
T PRK09705 70 HVSERRSVAISLLLIAVGALMRELY-----PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMG 143 (393)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHC-----cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999999999997 7899999999999999
Q ss_pred HHHHHHHHhhhHhh--cCcceeeehhhHHHHHHHHHHHhhe-ecCCcCCCCCCChhhhhhhhhccCCccccccccccccC
Q 010904 193 GNIIGSVLASGVLE--FGWGWSFVLPGFLVIFVGVFVFLFL-VVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESG 269 (497)
Q Consensus 193 G~~~g~~~~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (497)
|..+|+.+++.+.+ .+||+.+.+.++..++. ++.++.. ++.|+.+. +
T Consensus 144 g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~----------------------- 193 (393)
T PRK09705 144 GGGLGAAITPWLVQHSETWYQTLAWWALPAVVA-LFAWWWQSAREVASSH------K----------------------- 193 (393)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHHhcCCCcccc------C-----------------------
Confidence 99999999998874 38999887766665543 2222222 22221100 0
Q ss_pred CCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHh
Q 010904 270 SSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLI 349 (497)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l 349 (497)
++ ...++.+++|+.|...+..++....++....|+|.|+++ +|++..+++...++..++.++++++.+++
T Consensus 194 -~~----~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-----~g~s~~~ag~~~~~~~i~~i~g~~~~g~l 263 (393)
T PRK09705 194 -TT----TTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-----IGASAQYSGSLLALMTLGQAAGALLMPAM 263 (393)
T ss_pred -CC----cCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 00 011344567778877777777777888889999999987 59999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHH
Q 010904 350 SDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTA 429 (497)
Q Consensus 350 ~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 429 (497)
.||+++|+....+..+..++...+... + .+.... ..++.|++.+..++.......+..++ ++++|++.|
T Consensus 264 ~~r~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~-------~~~~g~~~g 332 (393)
T PRK09705 264 ARHQDRRKLLMLALVLQLVGFCGFIWL-P-LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQ-------PAIAGKLVA 332 (393)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHc-c-chHHHH--HHHHHHHhccchHHHHHHHHHhhcCC-------HHHHHHHHH
Confidence 999999988887776666655544322 1 122222 23455777777777666666666543 245699999
Q ss_pred HHhhhhhhhhhhhhcccceeecc--CchHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 010904 430 IIDGTGSVGAALGPLLAGYISTR--GWNSVFFMLIVSILFAGMFLIRIVKAEIREK 483 (497)
Q Consensus 430 ~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (497)
+.+...++++.++|.+.|++.|. +|...|.+..+.+++..+..... ++|++++
T Consensus 333 ~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 387 (393)
T PRK09705 333 FMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRF-APARFPQ 387 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh-ccccccc
Confidence 99999999999999999999998 57788888777777665555444 3344443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=300.39 Aligned_cols=388 Identities=21% Similarity=0.327 Sum_probs=300.4
Q ss_pred HHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHH
Q 010904 44 YASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFG 123 (497)
Q Consensus 44 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~ 123 (497)
+..++.++..++...|.+.+++ |++ ..+.|++.+++.++..+++++.|+++||+|||+++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~----------g~s-------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 65 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDL----------GLS-------AAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVF 65 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhh----------CCC-------hhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHH
Confidence 4567778888899999999999 888 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhh
Q 010904 124 MMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASG 203 (497)
Q Consensus 124 ~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~ 203 (497)
.++.+++.++++++ ++++.+++.|++.|++.+...+....++.|++|+++|++++++.....++|.++++.+++.
T Consensus 66 ~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 140 (399)
T TIGR00893 66 IVIWGVFTGLQAFA-----GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGW 140 (399)
T ss_pred HHHHHHHHHHHHHH-----cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 99999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHH
Q 010904 204 VL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEA 282 (497)
Q Consensus 204 l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (497)
+. ..+||+.|++.+++.++..++.++..||+|++.....++++.. ..++...+. +.+++.+..+...++.
T Consensus 141 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~~ 211 (399)
T TIGR00893 141 ILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYI-----VVGGLLAEQ----QGKGPSTPKKYQIKEL 211 (399)
T ss_pred HHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhh-----cchhhcccc----ccccccCCCccchHHH
Confidence 77 5799999999998888877777677777665432222111110 000000000 0011112233456788
Q ss_pred hhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhH--HH
Q 010904 283 WKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAV--TS 360 (497)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~--~~ 360 (497)
+++|+++...+..++..........+.|.|+++. +|.++.+.+.+.....++.+++.++.++++||+++|+. ..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 287 (399)
T TIGR00893 212 LKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQE----RGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVF 287 (399)
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----hcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 9999999999999998888989999999999987 79999999999999999999999999999999999862 11
Q ss_pred HHHH--HHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhh
Q 010904 361 VAFL--LLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVG 438 (497)
Q Consensus 361 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 438 (497)
.... ...+............+...........+.+..+..+.......+.+|+ +.+|++.|+.+.+.++|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~g 359 (399)
T TIGR00893 288 ARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPG--------NIAGLTGGLINSLGNLG 359 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcCh--------hHHHHHHHHHHHHHHHh
Confidence 1111 1111111111111111222233333334444444677888888888886 44599999999999999
Q ss_pred hhhhhcccceeecc-C-chHHHHHHHHHHHHHHHHHHH
Q 010904 439 AALGPLLAGYISTR-G-WNSVFFMLIVSILFAGMFLIR 474 (497)
Q Consensus 439 ~~~~~~~~g~l~~~-g-~~~~~~~~~~~~~~~~~~~~~ 474 (497)
..++|.+.|++.|. + |+..+.+.+++.+++.+..+.
T Consensus 360 ~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 360 GIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL 397 (399)
T ss_pred hhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 6 999998888887777665543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=293.18 Aligned_cols=375 Identities=19% Similarity=0.273 Sum_probs=296.1
Q ss_pred CCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 010904 72 SNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGV 151 (497)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ 151 (497)
+.+++|+ ..+.|++.+++..|+.+++++.|+++||+|.|+++..+.++.++++++.+++. ..+++.+++.
T Consensus 65 ~~~~~ws-------~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa---~~~~~~~~~~ 134 (466)
T KOG2532|consen 65 AGEYDWS-------STEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAA---SIGFYLLLVL 134 (466)
T ss_pred CceecCC-------HHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH---HhcchhhHHH
Confidence 3456777 99999999999999999999999999999999999999999999999999972 1455688999
Q ss_pred HHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh--cCcceeeehhhHHHHHHHHHHHh
Q 010904 152 QIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE--FGWGWSFVLPGFLVIFVGVFVFL 229 (497)
Q Consensus 152 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~ 229 (497)
|++||++.|..+|+...+.++|.|++||++..++..++..+|.+++.+++|.+.+ .||+++|++.++++++..++.++
T Consensus 135 R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 135 RFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFL 214 (466)
T ss_pred HHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999884 79999999999999999998888
Q ss_pred heecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHH
Q 010904 230 FLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWL 309 (497)
Q Consensus 230 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (497)
+..|+|++++...++|.. .+++++.+.. .+++.+.+++++++++.+|.+.+..++..+..+.+..++
T Consensus 215 ~~~d~P~~h~~is~~El~----~I~~~k~~~~---------~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~ 281 (466)
T KOG2532|consen 215 FYSDSPSKHPNISEKELK----YIEKGKSEAH---------VKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYL 281 (466)
T ss_pred HhcCCcccCCCCCHHHHH----HHHhcccccc---------cCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999886655554443 1222111111 111156689999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhh--------hH-HHHHHHHHHHHHHHHHhhccCc
Q 010904 310 PFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEAR--------AV-TSVAFLLLSIPALVLYRTYGSI 380 (497)
Q Consensus 310 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~ 380 (497)
|.|++++ +|++..+.|++.+++.+...+..+++|.++||+.+| |. -.++....++.++.+.+....
T Consensus 282 PtY~~~V----L~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~- 356 (466)
T KOG2532|consen 282 PTYLKEV----LGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDE- 356 (466)
T ss_pred hHHHHHH----hCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCC-
Confidence 9999999 999999999999999999999999999999998552 22 223334444444444333222
Q ss_pred hhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceee-cc---CchH
Q 010904 381 SMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYIS-TR---GWNS 456 (497)
Q Consensus 381 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~-~~---g~~~ 456 (497)
+.+..++ ++....+..+...........+.. +++.+..+|+.+....+.+.++|.+.|.+. +. .|+.
T Consensus 357 ~~~~a~~-~l~~~~~~~g~~~~Gf~~~~~~~a--------pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~ 427 (466)
T KOG2532|consen 357 HRLLAVI-LLTIAIGLSGFNISGFYKNHQDIA--------PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRI 427 (466)
T ss_pred cchHHHH-HHHHHHHHcccchhhhHhhhhhcc--------chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHH
Confidence 2222222 222333333333333333333312 366699999999999999999999999998 33 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 010904 457 VFFMLIVSILFAGMFLIRIVKAEIREK 483 (497)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (497)
+|.+.+++.+++.+++.++-..|..+.
T Consensus 428 VF~i~a~i~~~~~i~f~~f~s~e~~~w 454 (466)
T KOG2532|consen 428 VFLIAAGILIVGNIIFLFFGSGEPAPW 454 (466)
T ss_pred HHHHHHHHHHHhchheeEeecCcccCc
Confidence 999999999999877766644444433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=298.05 Aligned_cols=410 Identities=21% Similarity=0.373 Sum_probs=297.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcc
Q 010904 29 LIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAG 108 (497)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (497)
.++.++..+..+.+.+...+.++..+....|.+.+ + |++ +.+.+++.+++.++..+++++.|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~----------g~s-------~~~~g~~~~~~~~~~~~~~~~~G 82 (438)
T TIGR00712 21 YKRLRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-Q----------GFS-------KGELGFALSAISIAYGFSKFIMG 82 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-c----------CCC-------HhHhHHHHHHHHHHHHHhhhccc
Confidence 34456777778888889999888888888888775 5 777 99999999999999999999999
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHH
Q 010904 109 HVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNS 188 (497)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 188 (497)
+++||+|||+++..+.++.+++.+++++.... .++++.+.+.|++.|++.+..++.....+.|++|+++|++++++++.
T Consensus 83 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~ 161 (438)
T TIGR00712 83 SVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA-TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNC 161 (438)
T ss_pred hhhhccCCceehHHHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHH
Confidence 99999999999999999999998887764100 14677888999999999999999899999999999999999999999
Q ss_pred HhhhHHHHHHHHhhhHh--hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCcccccccccc
Q 010904 189 HTSIGNIIGSVLASGVL--EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLL 266 (497)
Q Consensus 189 ~~~~G~~~g~~~~~~l~--~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (497)
+.++|..+++.+.+... ..+||+.|++.++++++..++.++++||+|++...++.++.. ++..+...++
T Consensus 162 ~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-- 232 (438)
T TIGR00712 162 AHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYR-------NDYPDDYNEK-- 232 (438)
T ss_pred HHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcc-------cccccccccc--
Confidence 99999999987766544 368999999999988887777778888876543211111000 0000000000
Q ss_pred ccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhh
Q 010904 267 ESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILA 346 (497)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~ 346 (497)
.+.+...+....+.+++++.+|...+..++.....++...++|.|+++. +|+++.++++...+..++.+++.++.
T Consensus 233 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~g~s~~~~~~~~~~~~~~~~ig~~~~ 307 (438)
T TIGR00712 233 -AEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEV----KHFALDKSSWAYFLYEYAGIPGTLLC 307 (438)
T ss_pred -cccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHc----cCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 0000111111123578899999988888887777788889999999997 79999999999999999999999999
Q ss_pred HHhHHhhhhhhHHHHHHHHHHH--HHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchh
Q 010904 347 GLISDMIEARAVTSVAFLLLSI--PALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRAL 424 (497)
Q Consensus 347 g~l~dr~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (497)
|+++||+++++....+.....+ ..+.........+.+......++.|+...+..........+.+|+ +.+
T Consensus 308 g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~ 379 (438)
T TIGR00712 308 GWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPK--------KAA 379 (438)
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh--------hhe
Confidence 9999999644322222222211 111111111122333333344455554333322223345566665 444
Q ss_pred HHHHHHHhhhhhhhh-hhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHHHhhh
Q 010904 425 ATVTAIIDGTGSVGA-ALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRIVKAE 479 (497)
Q Consensus 425 g~~~g~~~~~~~~g~-~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (497)
|++.|+.+...++++ .++|.+.|.+.|. ||...+++..++.+++.+..+...++|
T Consensus 380 g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 380 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 436 (438)
T ss_pred eeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999888875 6899999999998 999999988888887777766655433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=298.35 Aligned_cols=397 Identities=16% Similarity=0.158 Sum_probs=298.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhc
Q 010904 28 TLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFA 107 (497)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~ 107 (497)
+...++|.++..+++.....+.+...++...|.+.+++ |++ .++.+++.+.+.++..++.++.
T Consensus 12 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------g~s-------~~~~~~~~s~~~~~~~~~~~~~ 74 (455)
T TIGR00892 12 PDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIF----------QAT-------YSETAWISSIMLAVLYAGGPIS 74 (455)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHh----------Ccc-------hhHHHHHHHHHHHHHHHhhHHH
Confidence 34566788888888888877878878889999999999 888 9999999999999999999999
Q ss_pred cccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH-HHHHhhhhhcccchhhhhhhhcccCcccchhhHHHH
Q 010904 108 GHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVG-VQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVW 186 (497)
Q Consensus 108 g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 186 (497)
|+++||+|||++++.+.++.++++++++++ ++++.+++ .|++.|++.+...+...+++.++++ ++|+++.++.
T Consensus 75 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~ 148 (455)
T TIGR00892 75 SILVNRFGCRPVVIAGGLLASLGMILASFS-----SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLA 148 (455)
T ss_pred HHHHHHcCchHHHHhhHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHH
Confidence 999999999999999999999999999998 88988865 5799999999877777888999996 7999999999
Q ss_pred HHHhhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccc
Q 010904 187 NSHTSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGL 265 (497)
Q Consensus 187 ~~~~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
..+..+|..++|++++.+. .+|||+.|++.+++.++..+..++..++.+.....+.++++ ....+...++ ...
T Consensus 149 ~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~ 222 (455)
T TIGR00892 149 MAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKE-----GLPPDGSTKK-LSK 222 (455)
T ss_pred HhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccc-----cCCCCCcccc-ccc
Confidence 9999999999999998887 57999999999988776655444443332211100000000 0000000000 000
Q ss_pred cccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhh
Q 010904 266 LESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGIL 345 (497)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~ 345 (497)
. ...+...+....+++++|.++...+..++.....+....++|.|+++ +|++..+++.+.++.+++.++++++
T Consensus 223 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~ 295 (455)
T TIGR00892 223 -K-STAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-----KGVDEYEAAFLLSIIGFVDIFARPS 295 (455)
T ss_pred -c-chhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000111112367899999988888888777777888899999987 5999999999999999999999999
Q ss_pred hHHhHHhh--hhhhHHHHHH--HHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhccccccccccc
Q 010904 346 AGLISDMI--EARAVTSVAF--LLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNS 421 (497)
Q Consensus 346 ~g~l~dr~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (497)
.++++||. ++|+...+.. ...++..++... ..+.+..++..++.|++.+...+...+.+.+.+|+
T Consensus 296 ~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~-------- 364 (455)
T TIGR00892 296 CGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL---AGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGA-------- 364 (455)
T ss_pred HHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH---hchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhH--------
Confidence 99999973 3333333322 222222222222 24556666777788988888888888888888876
Q ss_pred chhHHHHHHHhhhhhhhhhhhhcccceeecc--CchHHHHHHHHHHHHHHHH
Q 010904 422 RALATVTAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFMLIVSILFAGMF 471 (497)
Q Consensus 422 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~ 471 (497)
++++++.|+++...++|++++|.+.|.+.+. +|+..|++.+++.+++.+.
T Consensus 365 ~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 365 QRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 3449999999999999999999999999987 5888988888777666553
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=300.45 Aligned_cols=366 Identities=18% Similarity=0.173 Sum_probs=290.9
Q ss_pred HHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchh
Q 010904 40 TFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLF 119 (497)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~ 119 (497)
.++........+..+++..|.+.+|+ |++ ..+.|++.+++.+++.+++++.|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~s-------~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~ 70 (377)
T TIGR00890 8 GTVIMCFTSGYVYTWTLLAPPLGRYF----------GVG-------VTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAV 70 (377)
T ss_pred HHHHHHHHhhHHhhhhhHHHHHHHHh----------CCC-------HHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccch
Confidence 33333334444667888999999999 888 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHH
Q 010904 120 LVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSV 199 (497)
Q Consensus 120 l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~ 199 (497)
+..+.++.+++.++++++ +|++.++++|++.|++.+..++.....+.+++| ++|+++.++...+.++|..++++
T Consensus 71 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~ 144 (377)
T TIGR00890 71 AMLGGILYGLGFTFYAIA-----DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSP 144 (377)
T ss_pred hHHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHH
Confidence 999999999999999998 999999999999999999888888888999997 68999999999999999987665
Q ss_pred HhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhh
Q 010904 200 LASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIG 278 (497)
Q Consensus 200 ~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (497)
+.+.+. ..|||+.|++.+++.++..+..+++++++|++...++. + ..+....
T Consensus 145 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------------------~~~~~~~ 197 (377)
T TIGR00890 145 LITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI--E-------------------------VSVKDYT 197 (377)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCc--c-------------------------cchhhhh
Confidence 555555 57899999999998888777777777654432111000 0 0011123
Q ss_pred HHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhH
Q 010904 279 FLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAV 358 (497)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 358 (497)
.++.+++|.++...+..++..........+.+.|.++ +|.+..+.+.......++.++++++.|+++||++||+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~ 272 (377)
T TIGR00890 198 VWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-----LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKT 272 (377)
T ss_pred HHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5678889999888777776666666666677777766 58888889999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhh
Q 010904 359 TSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVG 438 (497)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 438 (497)
+..+.....++.+.+... +..+........++.+++.+...+.......+.+|++ +++++.|+.+....+|
T Consensus 273 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~--------~~~~~~g~~~~~~~~g 343 (377)
T TIGR00890 273 MSIVFGISAVGMAAMLFI-PMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPA--------NSAANYGFLYTAKAVA 343 (377)
T ss_pred hhHHHHHHHHHHHHHHHc-ccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhh--------hhhhHhHHHHHHHHHH
Confidence 888777777766555442 2122223334455667777777777777888888764 4499999999999999
Q ss_pred hhhhhcccceeecc-CchHHHHHHHHHHHHHH
Q 010904 439 AALGPLLAGYISTR-GWNSVFFMLIVSILFAG 469 (497)
Q Consensus 439 ~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~ 469 (497)
..++|.+.|.+.+. ||+..|.+.+++.+++.
T Consensus 344 ~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 344 GIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 99999999999888 99999988877776654
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=290.57 Aligned_cols=389 Identities=13% Similarity=0.065 Sum_probs=298.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccCC-CCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccc
Q 010904 31 FHQITALVITFFAYASFHASRKPPSIVKSVLGP-TFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGH 109 (497)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~ 109 (497)
+..+..+.+..+++++.+.....++++.+.+.+ |+ |++ .+|.+++.+++.+++.++.++.|+
T Consensus 30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~----------~ls-------~~q~g~l~ai~~l~~al~rip~G~ 92 (462)
T PRK15034 30 HIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGF----------NFT-------TDQLFLLTALPSVSGALLRVPYSF 92 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567778888888888999999999898876 78 888 999999999999999999999999
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHH
Q 010904 110 VGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSH 189 (497)
Q Consensus 110 l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 189 (497)
+.||+|.|+++.++.+++++.+++.+++.....++++.+++.|++.|++ +..++.....+++|+|+++||+++|+....
T Consensus 93 l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~ 171 (462)
T PRK15034 93 MVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGL 171 (462)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHH
Confidence 9999999999999999999999998874211226899999999999998 668899999999999999999999999877
Q ss_pred hhhHHHHHHHHhhhHh------hc-------------CcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhh
Q 010904 190 TSIGNIIGSVLASGVL------EF-------------GWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELM 250 (497)
Q Consensus 190 ~~~G~~~g~~~~~~l~------~~-------------gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 250 (497)
.++|..+++++...+. .. +||.++++..++.++.+++.++++++.|+.+
T Consensus 172 G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~------------ 239 (462)
T PRK15034 172 GNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSR------------ 239 (462)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc------------
Confidence 7777766655554322 12 3666667777777777666666655543210
Q ss_pred hhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhH
Q 010904 251 NVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGI 330 (497)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 330 (497)
......++.+|+|+.|...+.+++.+..+.++..++|.|+++. + +......
T Consensus 240 -----------------------~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~----~--~~~~~l~ 290 (462)
T PRK15034 240 -----------------------ASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQ----F--PDVNILR 290 (462)
T ss_pred -----------------------cCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--ChHHHHH
Confidence 0123367899999999999999999999989999999999886 3 3333333
Q ss_pred HHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccC---chhHHHHHHHHHHhhhccCcchhHHHHH
Q 010904 331 LSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGS---ISMITNIPLMFLSGLLVNGPYSLITTAV 407 (497)
Q Consensus 331 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 407 (497)
...+..+...+.++++|+++||+|+++.+.++++.+.+....+....+. .+.+.....++...++.+.......-.+
T Consensus 291 ~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~i 370 (462)
T PRK15034 291 LAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMI 370 (462)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhh
Confidence 3444567788889999999999999999988887777666443333322 2344444444444455555555666666
Q ss_pred Hhhccc-------------ccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc--CchHHHHHHHHHHHHHHHHH
Q 010904 408 AADLGT-------------QDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFMLIVSILFAGMFL 472 (497)
Q Consensus 408 ~~~~~~-------------~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~ 472 (497)
.+.+|+ +++....+++.|.+.|+....+.+|+++-|.+.|...+. ++...|+.+.+..+++.++.
T Consensus 371 p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 450 (462)
T PRK15034 371 AVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLT 450 (462)
T ss_pred HHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 666653 111112234679999999999999999999999998877 79999999999999998888
Q ss_pred HHHHhh
Q 010904 473 IRIVKA 478 (497)
Q Consensus 473 ~~~~~~ 478 (497)
+..+.+
T Consensus 451 w~~y~r 456 (462)
T PRK15034 451 WLVYGR 456 (462)
T ss_pred HHHhcc
Confidence 877643
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=294.53 Aligned_cols=350 Identities=16% Similarity=0.101 Sum_probs=267.3
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHH
Q 010904 52 KPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFT 131 (497)
Q Consensus 52 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 131 (497)
..+++..|.+.+|+ |++ ..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.
T Consensus 8 ~~~~~~lp~i~~~~----------~~s-------~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~ 70 (368)
T TIGR00903 8 VTFSPVLSLVAEDI----------DVS-------KEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA 70 (368)
T ss_pred HHHHhhHHHHHHHh----------CcC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 34677889999999 888 9999999999999999999999999999999988766555554443
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh-hcCcc
Q 010904 132 IIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-EFGWG 210 (497)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~gwr 210 (497)
+....+ +|++.+++.|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.+++++++..+. +.|||
T Consensus 71 ~~~~~~-----~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr 144 (368)
T TIGR00903 71 GRLLDP-----FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQ 144 (368)
T ss_pred HHHHHh-----ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 333333 6899999999999999986 4566677799999999999999999999999999999999988 57999
Q ss_pred eeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHH
Q 010904 211 WSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAP 290 (497)
Q Consensus 211 ~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (497)
+.|++.++++++..++.++.+||+|+++.... + .++...++++++++|.+|.
T Consensus 145 ~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~---~-------------------------~~~~~~~~~~ll~~~~~~~ 196 (368)
T TIGR00903 145 LLIIPIAAVAAAGIILVLAALPALPFQAAEGF---G-------------------------FKDAVKEFGALAGRKDLWI 196 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCc---c-------------------------hHHHHHHHHHHHcChhHHH
Confidence 99999999988888888888998876432100 0 0001124678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhh---hhHHHH-HHHHH
Q 010904 291 FAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEA---RAVTSV-AFLLL 366 (497)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~---~~~~~~-~~~~~ 366 (497)
..+..++.....+++.+|+|.|+++ .|++.. .+.......+.+.++ .++++||..| |+.... ...+.
T Consensus 197 ~~~~~~~~~~~~~~~~~wlp~~L~~-----~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~ 267 (368)
T TIGR00903 197 IGAILGFGVALFDNLAIWLEAALRP-----AGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLI 267 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----CCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999977 477764 566666666655555 4677777654 333232 23333
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhccc
Q 010904 367 SIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLA 446 (497)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 446 (497)
++....+.. ..+.........+.+++....++....+.+|.+|++. +|++.|+.+..+++++.++|.+.
T Consensus 268 a~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~--------rgt~~G~~~~~g~~~~~~~~~~~ 336 (368)
T TIGR00903 268 AAFFLALAF---ELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL--------HGKAAGAIGFTSRAISVALALAA 336 (368)
T ss_pred HHHHHHHHH---ccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh--------cCcccchhhHHHHHHHHHHHHHH
Confidence 332222221 1223333445556677777777778888889998744 49999999999999999999998
Q ss_pred ceeeccCchHHHHHHHHHHHHHHHHHH
Q 010904 447 GYISTRGWNSVFFMLIVSILFAGMFLI 473 (497)
Q Consensus 447 g~l~~~g~~~~~~~~~~~~~~~~~~~~ 473 (497)
+.+.. +.+..|.+.++..+++.+...
T Consensus 337 ~~~~~-~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 337 MLFIS-SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHhc-CHHHHHHHHHHHHHHHHHHHH
Confidence 87774 677788888888877776654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-37 Score=302.18 Aligned_cols=387 Identities=17% Similarity=0.177 Sum_probs=278.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcc
Q 010904 29 LIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAG 108 (497)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (497)
.++.++..+.......+....+...+++..|.+.+|+ |++ ..+.+++.+.+.+++.+++++.|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------gls-------~~~~g~~~~~~~~~~~~~~~~~G 92 (476)
T PLN00028 30 FARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNL----------NLT-------KSDIGNAGIASVSGSIFSRLAMG 92 (476)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555666666666666778889999999 888 99999999999999999999999
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHH
Q 010904 109 HVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNS 188 (497)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 188 (497)
+++||+|||+++..+.++++++.++++++ ++++.++++|+++|++.+... ....+++|++|+++|++++++...
T Consensus 93 ~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~ 166 (476)
T PLN00028 93 PVCDLYGPRYGSAFLLMLTAPAVFCMSLV-----SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAG 166 (476)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHH
Confidence 99999999999999999999999999998 899999999999999988654 456788999999999999999988
Q ss_pred HhhhHHHHHHHHhhhHh----h------cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCcc
Q 010904 189 HTSIGNIIGSVLASGVL----E------FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKV 258 (497)
Q Consensus 189 ~~~~G~~~g~~~~~~l~----~------~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 258 (497)
..++|..+++.+...+. + .|||+.|++.+++.++..++.+++.++.|+... ++.+. +.
T Consensus 167 ~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~---~~~~~-------~~-- 234 (476)
T PLN00028 167 WGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNY---RELKK-------SG-- 234 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCch---hhHHh-------cC--
Confidence 77778777766555442 1 489999999999988876666655544443210 00000 00
Q ss_pred ccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhh
Q 010904 259 ENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIG 338 (497)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~ 338 (497)
+.++.+....+++.++++++|...+..++.....+.+..++|.|+.+. +|+++.+++.+.++..++
T Consensus 235 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~g~s~~~a~~~~~~~~~~ 300 (476)
T PLN00028 235 ----------TMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDR----FGLSLETAGAIAASFGLM 300 (476)
T ss_pred ----------ccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh----cCCCHHHHHHHHHHHHHH
Confidence 000111223467788899999888877766666677788999999887 799999999999999999
Q ss_pred hhhhhhhhHHhHHhhhhhh------HHH-HHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhc
Q 010904 339 GVFGGILAGLISDMIEARA------VTS-VAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADL 411 (497)
Q Consensus 339 ~~~~~~~~g~l~dr~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 411 (497)
.++++++.|+++||+++|+ ... ....+.++..+++. ...+.+...+.+++.+++.+...+.......+.
T Consensus 301 ~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~- 376 (476)
T PLN00028 301 NLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG---RANSLGAAIVVMILFSIFVQAACGATFGIVPFV- 376 (476)
T ss_pred HHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHHHHHhhhhhcccCccc-
Confidence 9999999999999998752 121 22222222222211 122333334444455554433333333333332
Q ss_pred ccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHHHh
Q 010904 412 GTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 412 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
.+ +.+|++.|+.+..+++|+.++|.+.+ ..+. +|+..|++.+++.+++.++.++.+.
T Consensus 377 ~~--------~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~~ 434 (476)
T PLN00028 377 SR--------RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIHF 434 (476)
T ss_pred Ch--------hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHheec
Confidence 22 45699999999988889988888765 2223 6999999998888888777766643
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=296.51 Aligned_cols=377 Identities=16% Similarity=0.179 Sum_probs=295.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccc
Q 010904 33 QITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGD 112 (497)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d 112 (497)
|+.+...++++++....+...++...|.+.+++ |++ .++.+++.+.+.+++.+++++.|++.|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~----------~~s-------~~~~g~~~s~~~~~~~i~~~~~g~l~d 67 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYF----------NLP-------VSSMSNTFTFLNAGILISIFLNAWLME 67 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677788888888888899999999999 888 999999999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhh
Q 010904 113 TIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSI 192 (497)
Q Consensus 113 r~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 192 (497)
|+|||+++..+.++.+++.++++++ ++++.+++.|+++|++.+...+...+++.|++|+++|+++++..+....+
T Consensus 68 r~g~r~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 142 (394)
T PRK03699 68 IIPLKRQLIFGFALMILAVAGLMFS-----HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSM 142 (394)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHc-----chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHh--hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCC
Q 010904 193 GNIIGSVLASGVL--EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGS 270 (497)
Q Consensus 193 G~~~g~~~~~~l~--~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (497)
|..++|.+.+.+. ..|||+.|.+.+++.++..++.++ ++.|+..+.++ ++ + +
T Consensus 143 g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~~~~~~--~~--------------~--------~ 196 (394)
T PRK03699 143 AGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF--SEFPALGKHAP--KA--------------D--------K 196 (394)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh--cCCccccccCc--cc--------------c--------C
Confidence 9999998888775 368999999988877665443322 23232111000 00 0 0
Q ss_pred CCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhH
Q 010904 271 SGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLIS 350 (497)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~ 350 (497)
+. . +...++.++...+..++.....+.+..|+|.|+++. +|+++.+.+.+.+...++..+++++.++++
T Consensus 197 ~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~ 265 (394)
T PRK03699 197 PV--A-----KEKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKK----FGMSLEDAGNLVSNFWMAYMVGMWIFSFIV 265 (394)
T ss_pred cc--c-----cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCChHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 001245667777777777777788889999999887 899999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHH
Q 010904 351 DMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAI 430 (497)
Q Consensus 351 dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 430 (497)
||+++|+.+.....+..+...++.. ..+.+...+..++.|++.+..++...+...+..+.+ .+...|.
T Consensus 266 dr~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~---------~~~~~g~ 333 (394)
T PRK03699 266 RFFDLQRILTVLAGLALVLMYLFVN---TDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA---------SPKLVNF 333 (394)
T ss_pred HHhchhhHHHHHHHHHHHHHHHHHH---cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---------CHHHHHH
Confidence 9999998887766655554443332 233444455666778777777776666666555421 2566788
Q ss_pred Hhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010904 431 IDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRIVKAEI 480 (497)
Q Consensus 431 ~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (497)
.....++|..++|.+.|++.+. |++..++..+++.+++.+......+.++
T Consensus 334 ~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (394)
T PRK03699 334 ILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGFVSK 384 (394)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999988 9999999888888887766555544333
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=308.98 Aligned_cols=435 Identities=15% Similarity=0.141 Sum_probs=293.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHh
Q 010904 26 NKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMY 105 (497)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~ 105 (497)
+.+..++++.++.++.++.+.+++|....+.+.|.+.+++.+ .+.+.+ ..+.+++.+.+.+++.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~-----~~~~~~-------~~~~~~~~~~~~ig~~ig~~ 74 (502)
T TIGR00887 7 TAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYH-----GKGPLP-------SSVSAAVNGSASIGTLAGQL 74 (502)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----Ccccch-------HHHHHHHHHHHHHHHHHHHH
Confidence 345677888888899999999999999999888887664200 001222 66779999999999999999
Q ss_pred hccccccccCCchhhHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHH
Q 010904 106 FAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWL-SVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMG 184 (497)
Q Consensus 106 ~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 184 (497)
++|+++||+|||+++.++.+++.++.++++++... ...+++.++++|+++|++.|...+....+++|++|+++|+++++
T Consensus 75 ~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~ 154 (502)
T TIGR00887 75 FFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMA 154 (502)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHH
Confidence 99999999999999999999999999998887100 00127899999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHhhhHh------------------------hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCC
Q 010904 185 VWNSHTSIGNIIGSVLASGVL------------------------EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGF 240 (497)
Q Consensus 185 ~~~~~~~~G~~~g~~~~~~l~------------------------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~ 240 (497)
+.+....+|.++++.++..+. +++||++|.+.++++++. .+..+++||+|++...
T Consensus 155 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~-~~~~~~lpESpr~l~~ 233 (502)
T TIGR00887 155 AVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLA-LYFRLTIPETPRYTAD 233 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHH-HHHHHhCCCCHHHHHH
Confidence 999999999999998876543 137999998887777664 5566789999998544
Q ss_pred CCChh-hh-hhhhhccCCccccccccccccCCCCchhhhhHHHHhhC---CchHH----HHHHHHHHHHHHHHHHHHHHH
Q 010904 241 ELPGK-EV-ELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKL---PRVAP----FAFCLFFSKLVAYTFLYWLPF 311 (497)
Q Consensus 241 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~ 311 (497)
+++++ +. +...+...++.+++.++..+.+++.+....++++++++ ++.+. .....++..+.+++...|.|.
T Consensus 234 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~ 313 (502)
T TIGR00887 234 VAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKV 313 (502)
T ss_pred hCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHH
Confidence 33322 11 11122211111111111000000111112346666653 22222 122333444456667778899
Q ss_pred HHHHhhhcccCCCcchhhH------------HHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccC
Q 010904 312 YIRHTAVAGVHLSHKTAGI------------LSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGS 379 (497)
Q Consensus 312 ~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (497)
++++ .|++..+.+. ......++.+++.++.++++||+|||+.+..+..+.+++..++......
T Consensus 314 i~~~-----~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~ 388 (502)
T TIGR00887 314 ILSA-----IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH 388 (502)
T ss_pred HHHH-----HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9977 4776543221 2334455677788999999999999999888777776665554432211
Q ss_pred -chhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc------
Q 010904 380 -ISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR------ 452 (497)
Q Consensus 380 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~------ 452 (497)
..........+...+...+..+....+..|.+|+ +.|+++.|+.+.++.++++++|.+.+++.+.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~--------~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 460 (502)
T TIGR00887 389 LSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPT--------RYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKG 460 (502)
T ss_pred cchhHHHHHHHHHHHHHhcCCCchhhhhhhccCch--------hHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccc
Confidence 1111112121222222233445556667788887 4459999999999999999999999998873
Q ss_pred -----CchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC
Q 010904 453 -----GWNSVFFMLIVSILFAGMFLIRIVKAEIREKLNEGK 488 (497)
Q Consensus 453 -----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (497)
++...|++++++.+++.+..+ +. +|+++++.+|.
T Consensus 461 ~~~~~~~~~~~~i~~~~~~~~~i~~~-~l-pEt~~~~leei 499 (502)
T TIGR00887 461 YPTGIWMGHVLEIFALFMFLGILFTL-LI-PETKGKSLEEL 499 (502)
T ss_pred ccccccchHHHHHHHHHHHHHHHHhe-Ee-ccCCCCCHHhh
Confidence 345677888777777655443 33 46666555443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=288.61 Aligned_cols=366 Identities=16% Similarity=0.152 Sum_probs=280.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccc
Q 010904 31 FHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHV 110 (497)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l 110 (497)
|..|..+..+.++.+............+|.+.+|+ |++ +++.|+..+.+.++..+++++.|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~s-------~~~~g~~~~~~~~~~~~~~~~~g~l 78 (394)
T PRK10213 16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDL----------GIS-------EGVAGQSVTVTAFVAMFASLFITQT 78 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555444444444333334434445678899999 888 9999999999999999999999999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHh
Q 010904 111 GDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHT 190 (497)
Q Consensus 111 ~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 190 (497)
.||+|||+++..+.++.+++.++++++ ++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.
T Consensus 79 ~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~ 153 (394)
T PRK10213 79 IQATDRRYVVILFAVLLTLSCLLVSFA-----NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAV 153 (394)
T ss_pred hcccCcHHHHHHHHHHHHHHHHHHHHH-----ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHH
Confidence 999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccC
Q 010904 191 SIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESG 269 (497)
Q Consensus 191 ~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (497)
++|..+||++++.+.+ +|||+.|++.++++++..+......||.|++.. +
T Consensus 154 ~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~------~----------------------- 204 (394)
T PRK10213 154 SIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPS------H----------------------- 204 (394)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcccc------c-----------------------
Confidence 9999999999999984 799999999887776654444444555432110 0
Q ss_pred CCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHH
Q 010904 270 SSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWL-PFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGL 348 (497)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 348 (497)
.....++.+++|.+|...+..++.....+....++ |.|.+ . +|+++.+.+......+++.+++.++.++
T Consensus 205 -----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~----~g~s~~~~g~~~~~~~~~~iig~~~~~~ 274 (394)
T PRK10213 205 -----QKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMN-L----AGFGVDGLTLVLLSFGIASFVGTSLSSF 274 (394)
T ss_pred -----chhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h----cCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 01124578889999887776666666666666676 55554 4 6999999999999999999999999999
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHH
Q 010904 349 ISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVT 428 (497)
Q Consensus 349 l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 428 (497)
+.||.+++ .+.....+..+..+.+... ..+.+......++.|++.+...+...+.+.+..|++ .+.+.
T Consensus 275 l~~r~~~~-~l~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 342 (394)
T PRK10213 275 ILKRSVKL-ALAGAPLVLAVSALVLTLW--GSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ---------AEKAG 342 (394)
T ss_pred HHhccchh-HHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc---------HHHHH
Confidence 99996444 3333333333332232221 134455566777788888888887777888877642 25666
Q ss_pred HHHhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHH
Q 010904 429 AIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAG 469 (497)
Q Consensus 429 g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~ 469 (497)
+......++|..+||.+.|++.|. |+...+...+++.++..
T Consensus 343 ~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 343 SIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence 667778889999999999999998 88877777766555444
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=299.33 Aligned_cols=377 Identities=15% Similarity=0.151 Sum_probs=278.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccc
Q 010904 30 IFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGH 109 (497)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~ 109 (497)
+++++..+..++++++.+.++.....+..|.+.+|+ |++ +.+.+++.+.+.+++.+++++.|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------~~s-------~~~~~~~~~~~~~~~~l~~~~~g~ 75 (426)
T PRK12307 13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADL----------GLT-------DMEGAFLATAAFIGRPFGGALFGL 75 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677888999999999999999999999999 888 999999999999999999999999
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHH
Q 010904 110 VGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSH 189 (497)
Q Consensus 110 l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 189 (497)
++||+|||+++.++.++.+++.++++++ ++++.++++|+++|++.+..++....++.|++|+++|++++++...+
T Consensus 76 l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 150 (426)
T PRK12307 76 LADKFGRKPLMMWSIVAYSVGTGLSGLA-----SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSG 150 (426)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHH
Confidence 9999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCcccccccccccc
Q 010904 190 TSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLES 268 (497)
Q Consensus 190 ~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (497)
..+|.++++.+.+.+. ..+||+.|++..+..++ .+......||++++... +. . ++.++.
T Consensus 151 ~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~~~~~-----~~------~-~~~~~~------- 210 (426)
T PRK12307 151 FGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLL-VIYIRARAPESKEWEEA-----KL------S-GKGKHS------- 210 (426)
T ss_pred HhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHH-HHHHHHHCCCChHHHHh-----hh------h-cccccc-------
Confidence 9999999998888877 47999999875443222 22222222332211100 00 0 000000
Q ss_pred CCCCchhhhhHHHHhhCCchHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhh
Q 010904 269 GSSGSLQAIGFLEAWKLPRVAPFAFCLFF---SKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGIL 345 (497)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~ 345 (497)
+...+.....+++++++|.++........ .....+....++|.|+++ .|+++.+.+...+...++.++++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~g~~~ 285 (426)
T PRK12307 211 QSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-----EGFDTGVVSNLMTAAAFGTVLGNIV 285 (426)
T ss_pred ccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00001122356788888887654433222 222333467789999987 5899999999999999999999999
Q ss_pred hHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhH
Q 010904 346 AGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALA 425 (497)
Q Consensus 346 ~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 425 (497)
.+++.||++||+.+..+..+..+..+.+... ...+........+..++...+..+.....+.+.+|+ +.+|
T Consensus 286 ~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--------~~~g 356 (426)
T PRK12307 286 WGLCADRIGLKKTFSIGLLMSFLFIFPLFRI-PQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPL--------EVRG 356 (426)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcH--------HHHh
Confidence 9999999999998877776665554443322 122222222222223333333344555667777776 4459
Q ss_pred HHHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHHH
Q 010904 426 TVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLI 462 (497)
Q Consensus 426 ~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~ 462 (497)
+++|+.+....+++.++|.+.|++.+. ++....++..
T Consensus 357 ~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~ 394 (426)
T PRK12307 357 LGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIV 394 (426)
T ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999999999999999999887 7655433333
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=275.00 Aligned_cols=385 Identities=17% Similarity=0.199 Sum_probs=320.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccc
Q 010904 31 FHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHV 110 (497)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l 110 (497)
+.+...+.+..+++.+.++....++++.+.+.+|+ ++| +.|.+++.++..+...+..++.|.+
T Consensus 10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~----------~LS-------~~q~~ll~aiPil~GallRl~~g~l 72 (417)
T COG2223 10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDF----------GLS-------EGQKGLLVAIPILVGALLRLPYGFL 72 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc----------CCC-------HHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 33445556666677777777777899999999999 888 9999999999999999999999999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHh
Q 010904 111 GDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHT 190 (497)
Q Consensus 111 ~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 190 (497)
.||||.|++...+.++..+-++..+++ ...+++|.+++++.+.|++.+ ........+++|||++++|.++|++. ..
T Consensus 73 ~drfGgR~~~~~s~~l~~IP~~~~~~a--~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~G 148 (417)
T COG2223 73 TDRFGGRKWTILSMLLLLIPCLGLAFA--VTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AG 148 (417)
T ss_pred hcccCchHHHHHHHHHHHHHHHHHHHH--ccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cc
Confidence 999999999999999999999999998 334556799999999999854 55777899999999999999999999 99
Q ss_pred hhHHHHHHHHhhhHh-hcC---cceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCcccccccccc
Q 010904 191 SIGNIIGSVLASGVL-EFG---WGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLL 266 (497)
Q Consensus 191 ~~G~~~g~~~~~~l~-~~g---wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (497)
++|..+..+++..+. ..| ||....+..+..++.+++.++.+.|.|+.+...++..
T Consensus 149 N~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~--------------------- 207 (417)
T COG2223 149 NLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL--------------------- 207 (417)
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc---------------------
Confidence 999999998888887 467 9999999999988888999999988887532211111
Q ss_pred ccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhh
Q 010904 267 ESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILA 346 (497)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~ 346 (497)
+...+.++++++.|.+.+.++.....+.++..++|.|+++. ||.++.++|.......+.+.+.++++
T Consensus 208 ---------~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~----fg~~~~~Ag~~a~~f~~~g~l~Rp~G 274 (417)
T COG2223 208 ---------PAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQ----FGLSPVTAGLIAFLFPLIGALARPLG 274 (417)
T ss_pred ---------hhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCChhhHHHHHHHHHHHHHHHHhcc
Confidence 13467889999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccC----chhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccc
Q 010904 347 GLISDMIEARAVTSVAFLLLSIPALVLYRTYGS----ISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSR 422 (497)
Q Consensus 347 g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (497)
|+++||+|.+|.+...+..+.++..++...... .+.......++..+++.+......+..++..++ +
T Consensus 275 G~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~---------~ 345 (417)
T COG2223 275 GWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP---------K 345 (417)
T ss_pred chhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH---------h
Confidence 999999999999999888888888777654311 234444444445555555555555555555554 3
Q ss_pred hhHHHHHHHhhhhhhhhhhhhcccceeecc--CchHHHHHHHHHHHHHHHHHHHHHhhh
Q 010904 423 ALATVTAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFMLIVSILFAGMFLIRIVKAE 479 (497)
Q Consensus 423 ~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (497)
+.|.+.|+....+.+|+..-|...|...+. ++...|+++....+++.+..+..+.++
T Consensus 346 ~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 346 ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 459999999999999999999999999988 599999999999999888777765544
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=289.03 Aligned_cols=360 Identities=13% Similarity=0.033 Sum_probs=288.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccc
Q 010904 30 IFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGH 109 (497)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~ 109 (497)
+++.+...+.+.+..++..+....+.+..|.+.+|+ |++ ..+.++..+.+.+++.+++++.|+
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~s-------~~~~~~~~~~~~~~~~~~~~~~G~ 70 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDF----------NAG-------AEWVPTSMTAYLAGGMFLQWLLGP 70 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHh----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777788888887777888889999999 888 999999999999999999999999
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHH
Q 010904 110 VGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSH 189 (497)
Q Consensus 110 l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 189 (497)
++||+|||+++..+..+.+++.++++++ ++++.+++.|+++|++.+...+...+.+.|++|+++|.+++++....
T Consensus 71 l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 145 (406)
T PRK15402 71 LSDRIGRRPVMLAGVAFFILTCLAILLA-----QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANV 145 (406)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 9999999999999999999999999988 89999999999999999988889999999999999999999999988
Q ss_pred hhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCcccccccccccc
Q 010904 190 TSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLES 268 (497)
Q Consensus 190 ~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (497)
..+|..+||.+++.+.+ .+||+.|++.+++.++..+..++..||++++...+.
T Consensus 146 ~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 199 (406)
T PRK15402 146 ALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKL-------------------------- 199 (406)
T ss_pred HHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccc--------------------------
Confidence 89999999999998874 699999999888888776666666666543211000
Q ss_pred CCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHH
Q 010904 269 GSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGL 348 (497)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 348 (497)
+..+....+++++++|.++...+..++..........+.|.++++. +|+++.+.+.......++.+++.++.++
T Consensus 200 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~g~~~~~~g~~~~~~~~~~~~g~~~~g~ 273 (406)
T PRK15402 200 --SLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISG----EQLSSYEYGLLQVPVFGALIAGNLTLAR 273 (406)
T ss_pred --cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----hCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011233467889999999888877777666667777789998887 7999999998888888889999999999
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHhhc--cCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHH
Q 010904 349 ISDMIEARAVTSVAFLLLSIPALVLYRTY--GSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALAT 426 (497)
Q Consensus 349 l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 426 (497)
++||+++|+.+..+..+..++.+++.... ...+.++.....++.|++.+...+........ .++ +++|+
T Consensus 274 l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~--------~~~g~ 344 (406)
T PRK15402 274 LTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSD--------VSKGT 344 (406)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hcc--------ccccH
Confidence 99999999988887776665555443321 12344455666677777776665555444332 222 33499
Q ss_pred HHHHHhhhhhhhhhhhhcccceeecc
Q 010904 427 VTAIIDGTGSVGAALGPLLAGYISTR 452 (497)
Q Consensus 427 ~~g~~~~~~~~g~~~~~~~~g~l~~~ 452 (497)
+.++++..+.++..+|+.+.+++.+.
T Consensus 345 ~~~~~~~~~~~~~~~g~~~~~~l~~~ 370 (406)
T PRK15402 345 VSAAMGMLSMLIFTVGIELSKHAYLG 370 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999888
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=289.18 Aligned_cols=367 Identities=14% Similarity=0.144 Sum_probs=279.9
Q ss_pred HHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchh
Q 010904 40 TFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLF 119 (497)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~ 119 (497)
..++.+.....+....+..|.+.+|+ |++ ..+.|++.+.+.+++.++++++|++.||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~s-------~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~ 70 (382)
T PRK10091 8 LALGTFGLGMAEFGIMGVLTELAHDV----------GIS-------IPAAGHMISYYALGVVVGAPIIALFSSRYSLKHI 70 (382)
T ss_pred HHHHHHHHHhhHHHHHhChHHHHHHc----------CCC-------HHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHH
Confidence 34444445555555677889999999 888 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHH
Q 010904 120 LVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSV 199 (497)
Q Consensus 120 l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~ 199 (497)
+..+.++.+++.++++++ +|++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..++++
T Consensus 71 ~~~~~~~~~~~~~l~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 145 (382)
T PRK10091 71 LLFLVALCVIGNAMFTLS-----SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIP 145 (382)
T ss_pred HHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999998 999999999999999999988888899999999999999999999999999999999
Q ss_pred HhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhh
Q 010904 200 LASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIG 278 (497)
Q Consensus 200 ~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (497)
+++.+. ..|||+.|++.+++.++..+..++.+||.+++.+ . + ...
T Consensus 146 l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~---~--~-----------------------------~~~ 191 (382)
T PRK10091 146 LGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAK---G--G-----------------------------LRE 191 (382)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc---c--C-----------------------------HHH
Confidence 999887 4799999999998877766666666776432110 0 0 001
Q ss_pred HHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhH
Q 010904 279 FLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAV 358 (497)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 358 (497)
..+.++++..|......++.....+....+++.++++. +|+++.+.++......++.++++++.+++.||+++|+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~ 267 (382)
T PRK10091 192 QFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFI----SGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI 267 (382)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH
Confidence 23456777777766655555555555566778888876 79999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhh
Q 010904 359 TSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVG 438 (497)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 438 (497)
+..+..+..++.+++.... ++.+......++.+++..+..++......+..++ .+..+.+ ..+...++|
T Consensus 268 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~g 336 (382)
T PRK10091 268 AAVTDFIIVLALLMLFFFG--GMKTASLIFAFICCAGLFALSAPLQILLLQNAKG-------GELLGAA--GGQIAFNLG 336 (382)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCc-------chHHHHH--HHHHHHHHH
Confidence 8887777666655443321 2233334444445554444444333333333332 1333443 346678899
Q ss_pred hhhhhcccceeecc--CchHHHHHHHHHHHHHHHHHHHHHh
Q 010904 439 AALGPLLAGYISTR--GWNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 439 ~~~~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
.++||.+.|++.|. +|+..+...+++.++.........+
T Consensus 337 ~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (382)
T PRK10091 337 SAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGR 377 (382)
T ss_pred HHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999985 8999998887777666655554433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=296.50 Aligned_cols=388 Identities=17% Similarity=0.215 Sum_probs=288.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcc
Q 010904 29 LIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAG 108 (497)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (497)
.++++|..+..++++++.++++....+.+.|.+.+++ |++ ..+.|++.+.+.++..+++++.|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~s-------~~~~g~~~~~~~~~~~~~~~~~G 68 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEF----------GLT-------TVDAASLISAALISRWFGALMFG 68 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCC-------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999999999999 888 99999999999999999999999
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHH
Q 010904 109 HVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNS 188 (497)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 188 (497)
+++||+|||++++.+.++.+++.++++++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...
T Consensus 69 ~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 143 (405)
T TIGR00891 69 LWGDRYGRRLPMVTSIVLFSAGTLACGFA-----PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLIS 143 (405)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHH
Confidence 99999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHhhhHhh-cC--cceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhh-hhhhhccCCcccccccc
Q 010904 189 HTSIGNIIGSVLASGVLE-FG--WGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEV-ELMNVENGDKVENEEVG 264 (497)
Q Consensus 189 ~~~~G~~~g~~~~~~l~~-~g--wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 264 (497)
+..+|..+++.+++.+.+ .+ ||+.|++.+++.++. ++....+||++++...++++++. +...+..+++ +
T Consensus 144 ~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 216 (405)
T TIGR00891 144 GYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGE------H 216 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccc------h
Confidence 999999999999988874 44 999998866554443 44555567654432111110000 0000000000 0
Q ss_pred ccccCCCCchhhhhHHHHhhCC-c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhh
Q 010904 265 LLESGSSGSLQAIGFLEAWKLP-R-VAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFG 342 (497)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~ 342 (497)
..+. ..+......++..+++ . +........+..........++|.|+.+. +|++..+.+.+.....++.+++
T Consensus 217 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~s~~~~~~~~~~~~~~~~~g 290 (405)
T TIGR00891 217 RIAN--IVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD----LGLSPHTVANIVVFSNIGAIVG 290 (405)
T ss_pred hhhh--hhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH----hCCCHHHHHHHHHHHHHHHHHH
Confidence 0000 0000001111111111 1 22222333333444456667889999887 7999999999999999999999
Q ss_pred hhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccc
Q 010904 343 GILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSR 422 (497)
Q Consensus 343 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (497)
.++.++++||+++|+.+..+.....+........ ..+.+...+..++.+++..+..+.....+.+.+|++
T Consensus 291 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 360 (405)
T TIGR00891 291 GCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI--GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTD-------- 360 (405)
T ss_pred HHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcc--------
Confidence 9999999999999998877766553333332222 234444445556667766777777788888888764
Q ss_pred hhHHHHHHHhhhhhhhhhhhhcccceeecc-C-chHHHHHH
Q 010904 423 ALATVTAIIDGTGSVGAALGPLLAGYISTR-G-WNSVFFML 461 (497)
Q Consensus 423 ~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g-~~~~~~~~ 461 (497)
.+|+++|+.+...++++.++|.+.|++.|+ | |+..+...
T Consensus 361 ~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~ 401 (405)
T TIGR00891 361 QRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL 401 (405)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence 349999999999999999999999999998 6 77665543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=300.69 Aligned_cols=428 Identities=12% Similarity=0.029 Sum_probs=285.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccc
Q 010904 30 IFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGH 109 (497)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~ 109 (497)
.++.....+++.++.+.+.++...++...|.+.+++. +....+++++ ..+.+++.+.+.++..++++++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~s~~~ig~~~~~~~~G~ 77 (479)
T PRK10077 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFV--APQNLSESAA-------NSLLGFCVASALIGCIIGGALGGY 77 (479)
T ss_pred chHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhc--ccccccccCC-------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777778889999999999988888888762 1222233566 889999999999999999999999
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHhhhhh-------hhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhh
Q 010904 110 VGDTIDLRLFLVFGMMGSGLFTIIFGLAYW-------LSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLI 182 (497)
Q Consensus 110 l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~-------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 182 (497)
++||+|||++++++.++++++.++++++.. ...++++.++++|+++|++.|...+...++++|++|+++|+++
T Consensus 78 l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~ 157 (479)
T PRK10077 78 CSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKL 157 (479)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHH
Confidence 999999999999999999999888876310 1124467889999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHhhhHh---------hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhc
Q 010904 183 MGVWNSHTSIGNIIGSVLASGVL---------EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVE 253 (497)
Q Consensus 183 ~~~~~~~~~~G~~~g~~~~~~l~---------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 253 (497)
+++.+.+..+|.++++.++..+. +.|||+.|++.+++.++.. +..+++||+|++...+++.++.+...+.
T Consensus 158 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~~s~~~l~~~~~~~~~~~~~~~ 236 (479)
T PRK10077 158 VSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL-MLLYFVPETPRYLMSRGKQEQAEGILRK 236 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH-HHHHcCCCCcHHHHHcCCHHHHHHHHHH
Confidence 99999999999999988776553 3689999999888877764 4567789988654322222222111111
Q ss_pred cCCccccc--cccccccCCCCchhhhhHHHHhhCCchHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcch
Q 010904 254 NGDKVENE--EVGLLESGSSGSLQAIGFLEAWKLPRVAPFAF----CLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKT 327 (497)
Q Consensus 254 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 327 (497)
..+..+.+ .++..+. ........+..+.. ....... ..+......+...++.|.+.++ .|.+...
T Consensus 237 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-----~g~~~~~ 307 (479)
T PRK10077 237 IMGNTLATQALQEIKHS---LDHGRKTGGKLLMF-GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-----LGASTDI 307 (479)
T ss_pred HcCChhHHHHHHHHHHH---HHHhhhhhhhhcch-hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-----cCCCCch
Confidence 00000000 0000000 00000000001100 0000110 0111111122334566777766 5888877
Q ss_pred hhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhcc-CchhHHHHHHHHHHhhhccCc-chhHHH
Q 010904 328 AGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYG-SISMITNIPLMFLSGLLVNGP-YSLITT 405 (497)
Q Consensus 328 ~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~-~~~~~~ 405 (497)
.+......++..+++.++.++++||++||+.+..+..+.+++.+++..... ..........+++.+++.+.. .+....
T Consensus 308 ~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (479)
T PRK10077 308 ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWV 387 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHH
Confidence 777777888899999999999999999999998888887777666543221 111122223333444444332 355677
Q ss_pred HHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccce------eecc-CchHHHHHHHHHHHHHHHHHHHHHhh
Q 010904 406 AVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGY------ISTR-GWNSVFFMLIVSILFAGMFLIRIVKA 478 (497)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~------l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (497)
.+.|.+|+ +.|++++|+.+..++++..+++.+.+. +.+. ++...|++.+++.+++.++.+.+. +
T Consensus 388 ~~~e~~p~--------~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 458 (479)
T PRK10077 388 LLSEIFPN--------AIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFV-P 458 (479)
T ss_pred HhHhhCCh--------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhcc-c
Confidence 88888876 445999999999999999888666543 3344 777788888777776666554443 3
Q ss_pred hhhhhhh
Q 010904 479 EIREKLN 485 (497)
Q Consensus 479 ~~~~~~~ 485 (497)
|++++..
T Consensus 459 e~~~~~~ 465 (479)
T PRK10077 459 ETKGKTL 465 (479)
T ss_pred cCCCCCH
Confidence 4444433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=282.65 Aligned_cols=388 Identities=31% Similarity=0.540 Sum_probs=287.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCccc-cccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcc
Q 010904 30 IFHQITALVITFFAYASFHASRKPPSI-VKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAG 108 (497)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (497)
.+..+.++..++..++..+.++.+++. .+..+.+|+ +.. ..+.+.+.++|+++++++.+++|
T Consensus 40 ~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl----------~~~-------~~~l~~~~t~F~v~Yii~~~p~~ 102 (495)
T KOG2533|consen 40 RKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDL----------KLV-------GNQLGVLDTVFYVGYIIGQFPSG 102 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCcccc----------chh-------hhhhhhHHHHHHHHHHHHHhhHH
Confidence 334455666667777888888776654 233456776 666 89999999999999999999999
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHH
Q 010904 109 HVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNS 188 (497)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 188 (497)
.+.||++..+.+....+++++..++.... +|++.+++.|++.|+.++..+|+...+++.||.+++|++.++++.+
T Consensus 103 ~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-----~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a 177 (495)
T KOG2533|consen 103 LLGDRFPLSKGLSVSGILWGLFGFLTAAV-----HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYA 177 (495)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHH
Confidence 99999999999999999999999888887 9999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHhhhHh-------hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccc
Q 010904 189 HTSIGNIIGSVLASGVL-------EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENE 261 (497)
Q Consensus 189 ~~~~G~~~g~~~~~~l~-------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (497)
..++|.++|.+++..+. ..||||.|++.|+++++.+++.++++|+.|......+++++.....+.++...+.
T Consensus 178 ~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~- 256 (495)
T KOG2533|consen 178 SASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGG- 256 (495)
T ss_pred hcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCC-
Confidence 99999999999999863 3689999999999999999999999999998765444443221111111111111
Q ss_pred cccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhh
Q 010904 262 EVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVF 341 (497)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~ 341 (497)
.+++.+...+++.+++|++|...++.++.....+++.+|+|.|+++. .|++..++..+..+..+++++
T Consensus 257 --------~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~----~~~s~~~a~~ls~~~~~~g~v 324 (495)
T KOG2533|consen 257 --------IENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSN----GGYSELQANLLSTPYDVGGIV 324 (495)
T ss_pred --------cccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcC----CCcChHHhccccchHHhhhHH
Confidence 11115677899999999999999999999999999999999999995 689999999999999999999
Q ss_pred hhhhhHHhHHh----hhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhccccccc
Q 010904 342 GGILAGLISDM----IEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLI 417 (497)
Q Consensus 342 ~~~~~g~l~dr----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 417 (497)
+.+++|+++|| ..+|........+..+...+..... ...............+.....+.......+...++
T Consensus 325 ~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~--- 399 (495)
T KOG2533|consen 325 GLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAA--AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGN--- 399 (495)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh--ccchHHhHHHHhcchhhHHHHHHHHhhccccccch---
Confidence 99999999999 5566666555555555553333221 22222233333333334444444455555554443
Q ss_pred ccccchhHHHHHHHhhhhhhhhhhhh-cccceeecc-CchHHHHHH
Q 010904 418 KGNSRALATVTAIIDGTGSVGAALGP-LLAGYISTR-GWNSVFFML 461 (497)
Q Consensus 418 ~~~~~~~g~~~g~~~~~~~~g~~~~~-~~~g~l~~~-g~~~~~~~~ 461 (497)
.|..++..... ...+.++.++| ...+....+ ++...|...
T Consensus 400 ---~k~~~~~~~~i-~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 400 ---TKALTTVSAII-DGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred ---HHhHHHHhhhh-cchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 34444444433 44444444444 444444443 666666333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=291.59 Aligned_cols=372 Identities=24% Similarity=0.461 Sum_probs=287.2
Q ss_pred HHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhH
Q 010904 42 FAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLV 121 (497)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~ 121 (497)
++++..+.++..++...|.+.+++ |++ ..+.|++.+++.++..+++++.|+++||+|||+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~----------g~s-------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 64 (379)
T TIGR00881 2 IGYAAYYLVRKNFALAMPYLVEEI----------GLS-------KTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLP 64 (379)
T ss_pred chhhHHHHhHHhhhhhhHHHHHHh----------CCC-------HhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhH
Confidence 356777888889999999999999 888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHH-HH
Q 010904 122 FGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGS-VL 200 (497)
Q Consensus 122 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~-~~ 200 (497)
.+.++.+++.++++++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ .+
T Consensus 65 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 139 (379)
T TIGR00881 65 IGLILCAIVNLFFGFS-----TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLV 139 (379)
T ss_pred HHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHH
Confidence 9999999999999998 99999999999999999999999999999999999999999999999999999999 46
Q ss_pred hhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhH
Q 010904 201 ASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGF 279 (497)
Q Consensus 201 ~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (497)
++.+. ..+||+.|++.+++.++..++.+++.||+|+....++.+++. .++.+++.+ +.+++....+...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---~~~~~~~~~~~~~ 209 (379)
T TIGR00881 140 LFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMP-------NEEPDGDAE---KKEEELTKKQIFL 209 (379)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCc-------ccccccccc---cccccccchHHHH
Confidence 66655 478999999999888887777777777766543221111110 000000000 0011112233456
Q ss_pred HHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhh-hH
Q 010904 280 LEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEAR-AV 358 (497)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~-~~ 358 (497)
++.+++|.+|...+..++..........+.|.|+++. +|+++.+.+.......++.+++.++.+++.||..++ +.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~ 285 (379)
T TIGR00881 210 QYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQE----KGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRG 285 (379)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcch
Confidence 7788999999998888888888888999999999887 799999999999999999999999999999986433 32
Q ss_pred HH-HHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhh
Q 010904 359 TS-VAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSV 437 (497)
Q Consensus 359 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 437 (497)
.. ..........+.........+........++.|+...+..+.......+.+|+ +.+|++.|+.+....+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~ 357 (379)
T TIGR00881 286 PLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPK--------KAAGTAAGFVGFFAYL 357 (379)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc--------chhHHHHHHHHHhhhh
Confidence 22 22111112122222211123334445555666766666556666677788776 4459999999999999
Q ss_pred hhhhhhcccceeecc-CchHH
Q 010904 438 GAALGPLLAGYISTR-GWNSV 457 (497)
Q Consensus 438 g~~~~~~~~g~l~~~-g~~~~ 457 (497)
|+.++|.+.|.+.|. ||+..
T Consensus 358 g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 358 GGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred hhhhhhhhHHHHHHhhccccc
Confidence 999999999999988 77654
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=291.02 Aligned_cols=385 Identities=14% Similarity=0.132 Sum_probs=273.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccc-cCCCCCCCCCCCCCCCCCCCCCCCCCccchhhH-----HHHHHHHHHHHh
Q 010904 32 HQITALVITFFAYASFHASRKPPSIVKSV-LGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELD-----LAFLTSYSVGMY 105 (497)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----s~~~~~~~~~~~ 105 (497)
+++..+..++++++++++|...++.+.|. +.+++. ++++ +. .+++. ++..+++.++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------~~~~-------~~-~~~~~~~~~~~~~~~~~~~g~~ 82 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFF--------PQVS-------PA-MGTLAAFATFGVGFLFRPLGGV 82 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCCC-------cH-HHHHHHHHHHHHHHHHHhhHHH
Confidence 44557778888999999999998887764 444320 0122 33 45543 345567789999
Q ss_pred hccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHH--------HHHHHHHHhhhhhcccchhhhhhhhcccCcc
Q 010904 106 FAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLV--------YFVGVQIFCGLFQSIGWPCVVAVLGNWFGKA 177 (497)
Q Consensus 106 ~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 177 (497)
+.|+++||+|||+++..+.+++++++++++++ ++++ .++++|+++|++.|..++....++.|++|++
T Consensus 83 ~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~ 157 (438)
T PRK09952 83 VFGHFGDRLGRKRMLMLTVWMMGIATALIGLL-----PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKN 157 (438)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999998 7776 5889999999999999999999999999999
Q ss_pred cchhhHHHHHHHhhhHHHHHHHHhhhHh---------hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhh
Q 010904 178 KRGLIMGVWNSHTSIGNIIGSVLASGVL---------EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVE 248 (497)
Q Consensus 178 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~---------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 248 (497)
+|++..+....+..+|.+++..+...+. ++|||++|++.+++.++. +......||+|++...+.+.++
T Consensus 158 ~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~~~~~-- 234 (438)
T PRK09952 158 KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQHEQAA-- 234 (438)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHhhccc--
Confidence 9999999999999999999887766554 369999999887765442 3334445565532111000000
Q ss_pred hhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcch
Q 010904 249 LMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAF-CLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKT 327 (497)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 327 (497)
. ++ +....+.++++|+.+.... ..++.....+....|.|.|+++. +|++...
T Consensus 235 ------------~----------~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~----~g~s~~~ 287 (438)
T PRK09952 235 ------------A----------KK-RIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQN----LGLPREL 287 (438)
T ss_pred ------------c----------cc-cCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHH
Confidence 0 00 0011224567777766554 44555666777888999999887 7888876
Q ss_pred hhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhc-cCchhHHHHHHHHHHhhhccCcchhHHHH
Q 010904 328 AGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTY-GSISMITNIPLMFLSGLLVNGPYSLITTA 406 (497)
Q Consensus 328 ~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 406 (497)
........++..+++.++.|+++||++||+.+..+.++..+....+.... .....+..+...++.+++.+...+...+.
T Consensus 288 ~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 367 (438)
T PRK09952 288 FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPM 367 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555666777788889999999999999988777655544333222211 12223333344455566666666777788
Q ss_pred HHhhcccccccccccchhHHHHHHHhhhh-hhhhhhhhcccceeecc---CchHHHHHHHHHHHHHHHHHHHH
Q 010904 407 VAADLGTQDLIKGNSRALATVTAIIDGTG-SVGAALGPLLAGYISTR---GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~~~~~~~g~l~~~---g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
..|.+|.+ .|+++.|+.+... .+++.++|.+.+++.+. +|...+...+++.+++.+..+..
T Consensus 368 ~~e~~p~~--------~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 368 FTEMFGAS--------YRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHCCcc--------hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 88888863 4477888866554 48999999999999874 47777777777777776665443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=300.22 Aligned_cols=383 Identities=15% Similarity=0.201 Sum_probs=304.3
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccC
Q 010904 36 ALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTID 115 (497)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G 115 (497)
++..++++.+...++....++..|.+.+++ |.+ ..+.+++.+.+.++..++.++.|+++||+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----------g~s-------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 65 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDL----------GSS-------LSQVQWVITSYMLANAISIPLTGWLAKRFG 65 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCC-------hhhhhHHHHHHHHHHHHHHHhHHHHHHHhC
Confidence 455667788888888888899999999999 887 899999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHH
Q 010904 116 LRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNI 195 (497)
Q Consensus 116 rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 195 (497)
||++++.+.++.++++++++++ +|++.+++.|+++|++.+...+...+++.|++|+++|+++++++.....+|..
T Consensus 66 ~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 140 (485)
T TIGR00711 66 TRRLFLISTFAFTLGSLLCGVA-----PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPA 140 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHhCc-----CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhh--------hhhhccCCcccccccc--
Q 010904 196 IGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVE--------LMNVENGDKVENEEVG-- 264 (497)
Q Consensus 196 ~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-- 264 (497)
+||.+++.+. +.+||+.|++.++++++..++.++..||+++....+.+..... ......+++.+.+..+
T Consensus 141 ~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (485)
T TIGR00711 141 LGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNE 220 (485)
T ss_pred hhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchH
Confidence 9999999988 5799999999988888777777777776543322211111100 0000011111111000
Q ss_pred cc-------------ccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHH
Q 010904 265 LL-------------ESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGIL 331 (497)
Q Consensus 265 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~ 331 (497)
.. ...+.+.+++....+.+++|.++...+..++.....+....++|.|+++. +|+++.++++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~g~s~~~~g~~ 296 (485)
T TIGR00711 221 ILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQV----LGYTALQAGLH 296 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHH
Confidence 00 00000111222235688999999988888888888888899999999998 89999999999
Q ss_pred HhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHh-hccCchhHHHHHHHHHHhhhccCcchhHHHHHHhh
Q 010904 332 STIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYR-TYGSISMITNIPLMFLSGLLVNGPYSLITTAVAAD 410 (497)
Q Consensus 332 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 410 (497)
..+..++.+++.++.|++.||+++|+.+..+..+.+++...+.. ..+..+.+......++.|++.+..+++......+.
T Consensus 297 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~ 376 (485)
T TIGR00711 297 ILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSG 376 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999988888777776666552 22333445556667778888877777777777777
Q ss_pred cccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc
Q 010904 411 LGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR 452 (497)
Q Consensus 411 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 452 (497)
+|+ +++|++.|+.+..+.+|+.+|+.+.|.+.++
T Consensus 377 ~~~--------~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 377 LPP--------HKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred CCH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 775 4559999999999999999999999998875
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=293.56 Aligned_cols=383 Identities=12% Similarity=0.113 Sum_probs=291.0
Q ss_pred HHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCC
Q 010904 37 LVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDL 116 (497)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr 116 (497)
+.+++++++....+...++...|.+.+|+ |++ ..+.+++.+.+.++..++.+++|+++||+||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----------g~s-------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 74 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQSL----------GES-------PLHMHMVIVSYVLTVAVMLPASGWLADRVGV 74 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHh----------CcC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 34455667777777777888899999999 888 9999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHH
Q 010904 117 RLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNII 196 (497)
Q Consensus 117 r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 196 (497)
|++++.+.++.+++.++++++ ++++.+++.|+++|++.+...|...+++.|++|+++|+++.++.....++|..+
T Consensus 75 r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 149 (471)
T PRK10504 75 RNIFFTAIVLFTLGSLFCALS-----GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLL 149 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998888 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhh------hhh--hccCCcccccccccc-
Q 010904 197 GSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVE------LMN--VENGDKVENEEVGLL- 266 (497)
Q Consensus 197 g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~- 266 (497)
||.+++.+. ..|||+.|++......+..+......|+.+.... +.+..... ... ...+++.........
T Consensus 150 g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (471)
T PRK10504 150 GPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTR-RFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIA 228 (471)
T ss_pred hhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHH
Confidence 999999988 4799999999887777766666666555433221 11111000 000 000110000000000
Q ss_pred -------------ccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHh
Q 010904 267 -------------ESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILST 333 (497)
Q Consensus 267 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 333 (497)
..+++...++....+++|||.++......++..........+.|.|++.. +|.++.+.++...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~g~~~~ 304 (471)
T PRK10504 229 GLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIG----LGFSPFHAGLMMI 304 (471)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHH
Confidence 00000111122233588999998888888888777777778899999987 7999999999999
Q ss_pred hhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhccc
Q 010904 334 IFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGT 413 (497)
Q Consensus 334 ~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 413 (497)
...++.+++.++.+++.||+++|+.+..+..+..+...++.......+.+......++.|++.+..++.......+.+|+
T Consensus 305 ~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 384 (471)
T PRK10504 305 PMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPD 384 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 99999999989999999999999998888777777666554432222333333445566777777777777777788776
Q ss_pred ccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-Cc
Q 010904 414 QDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GW 454 (497)
Q Consensus 414 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~ 454 (497)
+ .+|.++|+.++...+|..+|+.+.|.+.+. ++
T Consensus 385 ~--------~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 385 N--------LASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred H--------hccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3 449999999999999999999999988776 44
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=288.93 Aligned_cols=358 Identities=12% Similarity=0.093 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhh-HHHH-----HHHHHHHHhh
Q 010904 33 QITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGEL-DLAF-----LTSYSVGMYF 106 (497)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~s~~-----~~~~~~~~~~ 106 (497)
++.....++++.+.+++|+..++...|.+.+|+ +.+ +.+.+.+ .+.. .++..+++++
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~----------~~~-------~~~~~~~~~~~~~~~~~~l~~~ig~~~ 75 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTF----------FPA-------GNEFASLMLTFAVFGAGFLMRPLGAIV 75 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCC-------CCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344678889999999999999999999999999 776 6555443 2222 2333468899
Q ss_pred ccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHH--------HHHHHHHHhhhhhcccchhhhhhhhcccCccc
Q 010904 107 AGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLV--------YFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAK 178 (497)
Q Consensus 107 ~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 178 (497)
.|+++||+|||++++.+.+++++++++++++ ++++ .++++|+++|++.+...+....+++|++|+++
T Consensus 76 ~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~ 150 (434)
T PRK15075 76 LGAYIDRVGRRKGLIVTLSIMASGTLLIAFV-----PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR 150 (434)
T ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHHHHhC-----CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc
Confidence 9999999999999999999999999999998 7766 46899999999999999999999999999999
Q ss_pred chhhHHHHHHHhhhHHHHHHHHhhhHh---------hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhh
Q 010904 179 RGLIMGVWNSHTSIGNIIGSVLASGVL---------EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVEL 249 (497)
Q Consensus 179 r~~~~~~~~~~~~~G~~~g~~~~~~l~---------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 249 (497)
|++++++.....++|..+++.+++.+. ++|||++|++..+...+ .++.++.+++.. +..+.
T Consensus 151 rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~-----~~~~~~~~~e~~---~~~~~-- 220 (434)
T PRK15075 151 KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF-----IFLIRRSLEETE---EFLAR-- 220 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH-----HHHHHHhcCCCH---HHHHh--
Confidence 999999999998888888888777652 47999999875433211 122222221110 00000
Q ss_pred hhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchh
Q 010904 250 MNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFA-FCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTA 328 (497)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 328 (497)
++ +.+.+..+++..++++.+... +..++.....+....|.|.|+++. +|++..+.
T Consensus 221 -----~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~g~~~~~~ 276 (434)
T PRK15075 221 -----KH---------------RPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV----LHLSAADS 276 (434)
T ss_pred -----hh---------------ccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHH
Confidence 00 000011133344555444432 333444556667888999999987 79999999
Q ss_pred hHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHH-HHhhccCchhHHHHHHHHHHhhhccCcchhHHHHH
Q 010904 329 GILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALV-LYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAV 407 (497)
Q Consensus 329 g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 407 (497)
++...+..++.+++.++.|+++||++||+....+..+..+.... ........+.........+.+++.+...+......
T Consensus 277 ~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 356 (434)
T PRK15075 277 LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVAL 356 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 98888899999999999999999999999877655443322221 11111222222233333444555555555556677
Q ss_pred HhhcccccccccccchhHHHHHHHhhhhh-hhhhhhhcccceeecc-Cc
Q 010904 408 AADLGTQDLIKGNSRALATVTAIIDGTGS-VGAALGPLLAGYISTR-GW 454 (497)
Q Consensus 408 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~-g~ 454 (497)
.|.+|++. ++++.|+.+.+.. +++.++|.+.|++.|. |+
T Consensus 357 ~e~~p~~~--------rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 357 TEVMPAEV--------RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHCCCCc--------cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 88888754 3888888655554 4588899999999887 54
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=282.64 Aligned_cols=371 Identities=11% Similarity=0.001 Sum_probs=278.0
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccC
Q 010904 36 ALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTID 115 (497)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G 115 (497)
....+.+..+..........+.+|.+.+++ +.+ ..+.++..+++.+++.++++++|+++||+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~----------~~~-------~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G 79 (413)
T PRK15403 17 FPMALILYDFAAYLTTDLIQPGIINVVRDF----------NAD-------VSLAPASVSLYLAGGMALQWLLGPLSDRIG 79 (413)
T ss_pred HHHHHHHHHHHHHHHHHhhccCHHHHHHHh----------CCC-------HHHHHHHHHHHHHHHHHHHHhhhHHHHHcC
Confidence 334445555556666677788889999999 887 999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHH
Q 010904 116 LRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNI 195 (497)
Q Consensus 116 rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 195 (497)
||++++.+.+++++++++++++ +|++.++++|+++|++.+...+....++.|++|+++|++++++......+|..
T Consensus 80 rr~~l~~~~~~~~~~~~~~~~a-----~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
T PRK15403 80 RRPVLITGALIFTLACAATLFT-----TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPI 154 (413)
T ss_pred chHHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 99999999999999998877777788899999999999999999999999999
Q ss_pred HHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCch
Q 010904 196 IGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSL 274 (497)
Q Consensus 196 ~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (497)
+||++++.+.+ .|||+.|++.+++.++..+..++.+||+++..+.+.+ ...
T Consensus 155 ~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~----------------------------~~~ 206 (413)
T PRK15403 155 IGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFS----------------------------AKS 206 (413)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCC----------------------------hHH
Confidence 99999998884 6999999999988887766556667775432110000 011
Q ss_pred hhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhh
Q 010904 275 QAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIE 354 (497)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~ 354 (497)
....+++++|||.+|...+...+.....+.+..+.|.++++. +|+++.+.++.......+.+++..+.+++.++..
T Consensus 207 ~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~----~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~ 282 (413)
T PRK15403 207 VLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDA----GGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPT 282 (413)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 234567889999999988888888777888888899999998 8999999999988888888888888887765544
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHh
Q 010904 355 ARAVTSVAFLLLSIPALVLYRT--YGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIID 432 (497)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 432 (497)
+++.......+..++..++... ....+.+..+...++.+++.+...+....... .+.+ ...|++.++.+
T Consensus 283 ~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~-------~~~G~a~a~~~ 353 (413)
T PRK15403 283 EPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNN-------LPKGTVSASLN 353 (413)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCC-------CCCcHHHHHHH
Confidence 4333322222222222221110 11223333455666667766666555553322 1111 11389999999
Q ss_pred hhhhhhhhhhhcccceeeccCchHHHHHHHHHHHHHH
Q 010904 433 GTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAG 469 (497)
Q Consensus 433 ~~~~~g~~~~~~~~g~l~~~g~~~~~~~~~~~~~~~~ 469 (497)
.....+..+++...|++.+++-...|....++..+..
T Consensus 354 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (413)
T PRK15403 354 MVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGVIV 390 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 9999999999999998877766666666665555443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=294.48 Aligned_cols=421 Identities=14% Similarity=0.088 Sum_probs=282.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccc
Q 010904 31 FHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHV 110 (497)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l 110 (497)
+..+...+++.++.+...++....+...|.+..+++ .....+.+.+ ..+.+++.+++.++..++++++|++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~g~l 94 (481)
T TIGR00879 24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFK--FTSANSDSYS-------SSLWGLVVSIFLVGGFIGALFAGWL 94 (481)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHh--cCCcccCCCC-------hhHHHHHHHHHHHHHHHHHHHhhHh
Confidence 334444555566667777888888888888887761 0111112233 7889999999999999999999999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHh
Q 010904 111 GDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHT 190 (497)
Q Consensus 111 ~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 190 (497)
+||+|||++++++.++++++.+++.+. ....+++.+++.|+++|++.+...+...+++.|++|+++|++++++++.+.
T Consensus 95 ~d~~grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 172 (481)
T TIGR00879 95 SDRFGRKKSLLIIALLFVIGAILMGLA--AFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAI 172 (481)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHH
Confidence 999999999999999999999998654 111456689999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHh---hhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhh-hhhhhccCCccccc-ccc
Q 010904 191 SIGNIIGSVLA---SGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEV-ELMNVENGDKVENE-EVG 264 (497)
Q Consensus 191 ~~G~~~g~~~~---~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~ 264 (497)
.+|..+++.++ .... ..+||+.|++.++..++ .++..+++||+|+....+.+.++. +...+....+.+.. ..+
T Consensus 173 ~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR00879 173 TFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGL-LFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLD 251 (481)
T ss_pred HHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-HHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHH
Confidence 99999999998 5544 47899999996665554 455667788877542222111111 11111110000000 000
Q ss_pred ---c--cccCCCCchhhhhHHHHhhC------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHh
Q 010904 265 ---L--LESGSSGSLQAIGFLEAWKL------PRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILST 333 (497)
Q Consensus 265 ---~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 333 (497)
. .....+....+..+.+.++. +.++...+..+...........+.|.++++ +|++..+.+....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~ 326 (481)
T TIGR00879 252 ELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-----AGVSTDHAFLVSI 326 (481)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-----cCCCchHHHHHHH
Confidence 0 00000000000112233322 222222233333333333455667777766 5899888889999
Q ss_pred hhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhh--ccCc------hhHHHHHHHHHHhhhccCcchhHHH
Q 010904 334 IFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRT--YGSI------SMITNIPLMFLSGLLVNGPYSLITT 405 (497)
Q Consensus 334 ~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~ 405 (497)
...++.+++.++.++++||++||+.+..+..+..++.+++... .... +........++.+....+..+....
T Consensus 327 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (481)
T TIGR00879 327 IVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWV 406 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehh
Confidence 9999999999999999999999999888877766665555421 1111 2222222222222222233344455
Q ss_pred HHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHHH
Q 010904 406 AVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 476 (497)
...+.+|+ +.++++.|+.+...+++++++|.+.+.+.++ +|...|++.+++.+++.++...+.
T Consensus 407 ~~~~~~p~--------~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 470 (481)
T TIGR00879 407 IVSEIFPL--------SLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFL 470 (481)
T ss_pred hhhccCCh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheec
Confidence 55777775 4459999999999999999999999999887 898889888888777776665443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=290.68 Aligned_cols=400 Identities=18% Similarity=0.178 Sum_probs=277.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccc
Q 010904 30 IFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGH 109 (497)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~ 109 (497)
++.+|..+..++++++.+.++....++..|.+.+++ |++ ..+.+++.+.+.+++.+++++.|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------~~s-------~~~~~~~~~~~~~~~~~~~~~~g~ 77 (496)
T PRK03893 15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEF----------GLT-------TVQAASLISAAFISRWFGGLLLGA 77 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888999999999988999999999999 888 999999999999999999999999
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHH
Q 010904 110 VGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSH 189 (497)
Q Consensus 110 l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 189 (497)
++||+|||++++.+.++.+++.++++++ ++++.+++.|++.|++.+...+....++.|++|+++|++++++...+
T Consensus 78 l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 152 (496)
T PRK03893 78 MGDRYGRRLAMVISIVLFSVGTLACGFA-----PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISG 152 (496)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCcccccccccccc
Q 010904 190 TSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLES 268 (497)
Q Consensus 190 ~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (497)
..+|..+++.+++.+. ..+||+.|++.++.. +..++.....||+++....++++++.+...+............. .
T Consensus 153 ~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 229 (496)
T PRK03893 153 FSIGAVVAAQVYSLVVPVWGWRALFFIGILPI-IFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINIL-L- 229 (496)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH-HHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHH-H-
Confidence 9999999999999887 579999998754433 32233334445543221110000000000000000000000000 0
Q ss_pred CCCCchhhhhHHHHh----------------------------hCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010904 269 GSSGSLQAIGFLEAW----------------------------KLPR---VAPFAFCLFFSKLVAYTFLYWLPFYIRHTA 317 (497)
Q Consensus 269 ~~~~~~~~~~~~~~~----------------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (497)
...........+ +.++ ........+......+....++|.|+++.
T Consensus 230 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~- 305 (496)
T PRK03893 230 ---TLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD- 305 (496)
T ss_pred ---HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhh-
Confidence 000000000000 0000 00011111111111123557899999866
Q ss_pred hcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhcc
Q 010904 318 VAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVN 397 (497)
Q Consensus 318 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 397 (497)
+|++..+.+.+.+...++.+++.++.|+++||+++|+.+..+..+..+..+.+.. ....+.+......++.++...
T Consensus 306 ---~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 381 (496)
T PRK03893 306 ---LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFA-IGGANVWVLGLLLFFQQMLGQ 381 (496)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh-ccccHHHHHHHHHHHHHHHhc
Confidence 7999999999999999999999999999999999999887766555544433322 222233333333333344433
Q ss_pred CcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHH
Q 010904 398 GPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGM 470 (497)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~ 470 (497)
+..+.......+.+|++ .+|+++|+.+....+|+.++|.+.|.+.|. |+...+...++...+..+
T Consensus 382 ~~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~~ 447 (496)
T PRK03893 382 GISGLLPKLIGGYFDTE--------QRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVI 447 (496)
T ss_pred ccchhhHHHHHhhCCHH--------HhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 44556667777777763 449999999999999999999999999998 888777665554444333
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=275.38 Aligned_cols=341 Identities=16% Similarity=0.141 Sum_probs=272.5
Q ss_pred HhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHH
Q 010904 48 HASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGS 127 (497)
Q Consensus 48 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 127 (497)
........+..|.+.+|+ |++ +.+.+++.+.+.++..+++++.|++.||+|||+++..+.++.
T Consensus 18 ~~~~~~~~~~~p~~~~~~----------g~s-------~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~ 80 (385)
T TIGR00710 18 PLGIDMYLPAFPEIAADL----------STP-------ASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIF 80 (385)
T ss_pred HHHHHHhcccHHHHHHHh----------CCC-------HHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence 334445666789999998 888 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh-h
Q 010904 128 GLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-E 206 (497)
Q Consensus 128 ~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~ 206 (497)
+++.++++++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+. .
T Consensus 81 ~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 155 (385)
T TIGR00710 81 ALSSLGLALS-----NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW 155 (385)
T ss_pred HHHHHHHHHH-----ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 999999999999999999999999999999999999999999999999999999999999887 4
Q ss_pred cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCC
Q 010904 207 FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLP 286 (497)
Q Consensus 207 ~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (497)
.+||+.|++.+++.++..+..++..||+++.... ++ .++....+++.+++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------------------------~~~~~~~~~~~~~~~ 206 (385)
T TIGR00710 156 LSWHAIFAFLSLAGILLSALIFFILPETLPYEAR--IQ---------------------------ISTYFETFLLLLKSK 206 (385)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc--CC---------------------------HHHHHHHHHHHHcCc
Confidence 7999999998888877766666666665432211 00 011233467788999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHH
Q 010904 287 RVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLL 366 (497)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 366 (497)
+++...+...+.....+....+.|.++++. +|.++.+.+.+.....++.+++.++.+++.||+++|+.+..+..+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 282 (385)
T TIGR00710 207 MFWGYALIYGASFGGFFAFFSGAPFVYIDI----MGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILF 282 (385)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcChHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 998888777777777777888889999877 8999999999999999999999999999999999999888777666
Q ss_pred HHHHHHHHhhc--cCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhc
Q 010904 367 SIPALVLYRTY--GSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPL 444 (497)
Q Consensus 367 ~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 444 (497)
.++..++.... ............++.|++.+...+.......+..|+ .++++.++.+.....++.+.+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~~~~~g~i~~~ 353 (385)
T TIGR00710 283 AVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH---------VAGTASALFGTLRLVLGAIVGY 353 (385)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc---------cchHHHHHHHHHHHHHHHHHHH
Confidence 66555443321 112233344455667777776666666666665542 2389999999888776666666
Q ss_pred ccceeecc
Q 010904 445 LAGYISTR 452 (497)
Q Consensus 445 ~~g~l~~~ 452 (497)
+.+.+.+.
T Consensus 354 ~~~~~~~~ 361 (385)
T TIGR00710 354 LVSLIHGN 361 (385)
T ss_pred HHHhcccc
Confidence 66744443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=280.27 Aligned_cols=382 Identities=23% Similarity=0.305 Sum_probs=284.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccc
Q 010904 30 IFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGH 109 (497)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~ 109 (497)
++++|..+..+++.++....+....+...|.+.+++ |++ ..+.+++.+.+.++..++.++.|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-------~~~~~~~~~~~~~~~~~~~~~~g~ 74 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEW----------GLD-------PVQLGFLFSAGLIGMAFGALFFGP 74 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcc----------CCC-------HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445666667777777777777777888899999998 887 899999999999999999999999
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHH
Q 010904 110 VGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSH 189 (497)
Q Consensus 110 l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 189 (497)
++||+|||+++..+.++.+++.+++.++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+
T Consensus 75 l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 149 (398)
T TIGR00895 75 LADRIGRKRVLLWSILLFSVFTLLCALA-----TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCG 149 (398)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHc-----cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhH
Confidence 9999999999999999999999999988 89999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCcccccccccccc
Q 010904 190 TSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLES 268 (497)
Q Consensus 190 ~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (497)
..+|..+++.+++.+. ..|||+.|++.+++.++..++.+.++||+++....+++++..+...+...+..++..+...+.
T Consensus 150 ~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (398)
T TIGR00895 150 YPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQ 229 (398)
T ss_pred HHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhcccccccccccc
Confidence 9999999999998887 579999999998777777677777788876543222111111111111100000000000000
Q ss_pred CCCCchhhhhHHHHhhC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhh
Q 010904 269 GSSGSLQAIGFLEAWKL---PRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGIL 345 (497)
Q Consensus 269 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~ 345 (497)
+.+....+...+..+++ +..+...+..++.....+....+.|.+.++ +|+++.+.+.......++.+++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (398)
T TIGR00895 230 KATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE-----LGFSLSLAATGGALFNFGGVIGSII 304 (398)
T ss_pred ccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00111111112223322 233444445555556666777888855555 6999999999999999999999999
Q ss_pred hHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhH
Q 010904 346 AGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALA 425 (497)
Q Consensus 346 ~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 425 (497)
.++++||+++|+. .....+..+...++... ..+.+......++.|++.+...+...+...+.+|+ +.+|
T Consensus 305 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~g 373 (398)
T TIGR00895 305 FGWLADRLGPRVT-ALLLLLGAVFAVLVGST--LFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPT--------AIRA 373 (398)
T ss_pred HHHHHhhcchHHH-HHHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH--------HHHH
Confidence 9999999998844 33333434333333321 23445556677788888888888888888888886 4459
Q ss_pred HHHHHHhhhhhhhhhhhhccccee
Q 010904 426 TVTAIIDGTGSVGAALGPLLAGYI 449 (497)
Q Consensus 426 ~~~g~~~~~~~~g~~~~~~~~g~l 449 (497)
++.|+.+.+..+|..++|.+.|++
T Consensus 374 ~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 374 TGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhc
Confidence 999999999999999999998875
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=266.10 Aligned_cols=375 Identities=20% Similarity=0.274 Sum_probs=282.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcc
Q 010904 29 LIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAG 108 (497)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (497)
..+..++.++++++..+.+++|++.++...+.+++.+ |++ ++..|++.+.+.+.+.+++++.|
T Consensus 27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~f----------ni~-------~s~~Gll~~vf~v~~~i~sPl~g 89 (493)
T KOG1330|consen 27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYF----------NIS-------DSELGLLQTVFIVVFMIASPLFG 89 (493)
T ss_pred ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhc----------CCC-------chhccchhHHHHHHHHHHHHHHH
Confidence 3445567788899999999999999999999999999 888 99999999999999999999999
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHH
Q 010904 109 HVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNS 188 (497)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 188 (497)
+++|||+||+++.+|..+|+++.++++++ ..+|+++++|.+.|+|.+...|.++++++|.+|.++|++++++++.
T Consensus 90 yLadryNR~~v~~vG~~iW~~Av~~~~fs-----~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~ 164 (493)
T KOG1330|consen 90 YLADRYNRKRVIAVGIFIWTLAVFASGFS-----NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYF 164 (493)
T ss_pred HHHhhcCcceEEeeHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhh
Confidence 99999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHhhhHhh--cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCcccccccccc
Q 010904 189 HTSIGNIIGSVLASGVLE--FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLL 266 (497)
Q Consensus 189 ~~~~G~~~g~~~~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (497)
+..+|..+|.+.+..+.. ..|||.|++.++++++++++.+++++|+++....+.+.+..
T Consensus 165 ~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~------------------- 225 (493)
T KOG1330|consen 165 AIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENK------------------- 225 (493)
T ss_pred hcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCc-------------------
Confidence 999999999999999883 34999999999999999999999888865432211111100
Q ss_pred ccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhh
Q 010904 267 ESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILA 346 (497)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~ 346 (497)
...+.....+..+.+.++|.+....+......+...++..|.|.+.....+- .|++..+..++..+...++++|.+++
T Consensus 226 -~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~-~~~~~~~~~ifg~vt~~~G~lGvl~G 303 (493)
T KOG1330|consen 226 -MVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYEL-IGFDHNATLIFGGVTCAGGSLGVLFG 303 (493)
T ss_pred -CCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHH-hCCccccchhhhhHHHhhchhhheeh
Confidence 0011222344556677778887777777777777777777887777654221 35677777777888899999999999
Q ss_pred HHhHHhhhhh----hH------HHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhcc-CcchhHHHHHHhhccccc
Q 010904 347 GLISDMIEAR----AV------TSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVN-GPYSLITTAVAADLGTQD 415 (497)
Q Consensus 347 g~l~dr~~~~----~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~ 415 (497)
|.++||+.++ .. .....+..++.++.+...... +.......++++|.... ..+........+.+|+..
T Consensus 304 giisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~-~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~ 382 (493)
T KOG1330|consen 304 GIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTS-SSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSR 382 (493)
T ss_pred HHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHhcccccccceeeEecCccc
Confidence 9999995331 11 111122222222222222222 22233333444444333 334444555667777644
Q ss_pred ccccccchhHHHHHHHhhhhh-hhhhhhhcccceeecc--Cch
Q 010904 416 LIKGNSRALATVTAIIDGTGS-VGAALGPLLAGYISTR--GWN 455 (497)
Q Consensus 416 ~~~~~~~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~--g~~ 455 (497)
|.++.++...+.. +|.+-+|.+.|.+.|+ +|+
T Consensus 383 --------Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 383 --------RTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK 417 (493)
T ss_pred --------ccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence 3777887776664 5666666699999988 655
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=279.39 Aligned_cols=369 Identities=11% Similarity=0.082 Sum_probs=279.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccc
Q 010904 30 IFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGH 109 (497)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~ 109 (497)
++..+..++.+++.++...+.+...+...|.+++++ |++ +.+.|++.+.+.+++.+++++.|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~----------~~s-------~~~~gl~~~~~~~g~~i~~~~~g~ 83 (438)
T PRK10133 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAF----------TLT-------NFQAGLIQSAFYFGYFIIPIPAGI 83 (438)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777777777888889999999999 888 999999999999999999999999
Q ss_pred cccccCCchhhHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHH
Q 010904 110 VGDTIDLRLFLVFGMMGSGLFTIIF---GLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVW 186 (497)
Q Consensus 110 l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 186 (497)
+.||+|||+++..+.++++++++++ .++ ++++.++++|+++|+|.+...+..+.++.|+.|+++|.+.+++.
T Consensus 84 l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a-----~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~ 158 (438)
T PRK10133 84 LMKKLSYKAGIITGLFLYALGAALFWPAAEI-----MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLA 158 (438)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHH
Confidence 9999999999999999999999886 355 89999999999999999999999999999988777777789999
Q ss_pred HHHhhhHHHHHHHHhhhHh--h-------------------------cCcceeeehhhHHHHHHHHHH-HhheecCCcCC
Q 010904 187 NSHTSIGNIIGSVLASGVL--E-------------------------FGWGWSFVLPGFLVIFVGVFV-FLFLVVRPEDL 238 (497)
Q Consensus 187 ~~~~~~G~~~g~~~~~~l~--~-------------------------~gwr~~f~~~~~~~~~~~~~~-~~~~~~~p~~~ 238 (497)
+..+.+|..+|+.+++.+. . .+||++|+....+..+..++. ....||.++++
T Consensus 159 ~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~ 238 (438)
T PRK10133 159 QTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN 238 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 9999999999998876543 0 246666654333333222222 22233321110
Q ss_pred CCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 010904 239 GFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYI-RHTA 317 (497)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 317 (497)
. ++ + +........++++++|.++...+..++......+...|.+.|+ ++.
T Consensus 239 ~---~~-~------------------------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~- 289 (438)
T PRK10133 239 H---SD-A------------------------KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI- 289 (438)
T ss_pred c---cc-c------------------------cccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Confidence 0 00 0 0001123356788999998877777777777777888999885 555
Q ss_pred hcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhcc
Q 010904 318 VAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVN 397 (497)
Q Consensus 318 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 397 (497)
+|+++.+++.......++.++++++++++.||+++|+.+..+..+..+..++.... + +. .....+.+.|++.+
T Consensus 290 ---~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-~--~~-~~~~~~~l~glg~~ 362 (438)
T PRK10133 290 ---PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-G--GH-VGLIALTLCSAFMS 362 (438)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-C--Ch-HHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999998877766665554443332 1 22 23456677899999
Q ss_pred CcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-C-chHHHHHHHHHHH
Q 010904 398 GPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-G-WNSVFFMLIVSIL 466 (497)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g-~~~~~~~~~~~~~ 466 (497)
..+|...+...+..+++ .+++.++.. ...+|+.++|.+.|.+.|. | .+..|++..+..+
T Consensus 363 ~i~P~~~s~a~~~~~~~---------~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~ 423 (438)
T PRK10133 363 IQYPTIFSLGIKNLGQD---------TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_pred HHHHHHHHHHHcccchh---------hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999998887643 256677665 4557889999999999887 6 5667765444443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=276.55 Aligned_cols=362 Identities=17% Similarity=0.147 Sum_probs=265.7
Q ss_pred HHHHHHHHhcCCCccccccc-cCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchh
Q 010904 41 FFAYASFHASRKPPSIVKSV-LGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLF 119 (497)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~ 119 (497)
.+..++..+......+.+|. +.+++ |++ +.+.|++.+++.+++.+++++.|+++||+|||++
T Consensus 21 ~~~~~~~~~~~~~~~~~l~~~i~~~~----------g~s-------~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~ 83 (399)
T PRK05122 21 VMFTFISYLTIGLPLAVLPGYVHDQL----------GFS-------AFLAGLVISLQYLATLLSRPHAGRYADTLGPKKA 83 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----------Ccc-------HHHHHHHHHHHHHHHHHhchhhHhHHhccCCcch
Confidence 33333333333344555564 67888 888 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhhh---hhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHH
Q 010904 120 LVFGMMGSGLFTIIFGLAYWL---SVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNII 196 (497)
Q Consensus 120 l~~~~~~~~i~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 196 (497)
+..+.++++++.+++.++... ...+++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 163 (399)
T PRK05122 84 VVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAI 163 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHH
Confidence 999999998887776654111 11367789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchh
Q 010904 197 GSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQ 275 (497)
Q Consensus 197 g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (497)
|+.+++.+. ..|||+.+++.+++.++.. .+.++.|+.... ++ +
T Consensus 164 g~~l~~~l~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~-~----------------------------- 207 (399)
T PRK05122 164 GAPLGVLLYHWGGLAGLGLLIMLLALLGL----LLARPRPAVPPV--KG-E----------------------------- 207 (399)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHH----HHHhcCCCCCCC--Cc-c-----------------------------
Confidence 999999887 5799998877665543321 122222221110 00 0
Q ss_pred hhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhh
Q 010904 276 AIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEA 355 (497)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~ 355 (497)
+.++++.++ +++.......+..........++|.|+.+. |++ +.+.......++.+++.++.+++.||+++
T Consensus 208 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~ 278 (399)
T PRK05122 208 RLPFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAAR-----GWD--GAALALTLFGVAFVGARLLFGNLINRLGG 278 (399)
T ss_pred chhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccc--cchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 001222222 122222333334445556667888888763 553 45666777888899999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhh
Q 010904 356 RAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTG 435 (497)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 435 (497)
|+.+..+..+..++.+++... .+.+...+..++.|++.+..++.......+.+|+ +.+|++.|+++...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~ 347 (399)
T PRK05122 279 LRVAIVSLLVEILGLLLLWLA---PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPP--------QNRGAALGAYSVFL 347 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHH
Confidence 998877777666665554442 3445556667788888877777766677777765 44599999999999
Q ss_pred hhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHH
Q 010904 436 SVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 436 ~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
++|..++|.+.|++.+. ||+..+++.+++.+++.+.....
T Consensus 348 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 348 DLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888 99999999888888776665544
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=277.07 Aligned_cols=354 Identities=14% Similarity=0.101 Sum_probs=277.4
Q ss_pred HHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHH
Q 010904 44 YASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFG 123 (497)
Q Consensus 44 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~ 123 (497)
.+...+......+..|.+..|+ +.+ ..+.|++.+++.++..++++++|+++||+|||++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~----------~~s-------~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~ 70 (365)
T TIGR00900 8 QLISLIGTAITQVALPLYVLAG----------TGS-------ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGA 70 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----------hcc-------HHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHH
Confidence 3333344444556667777777 666 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhh
Q 010904 124 MMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASG 203 (497)
Q Consensus 124 ~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~ 203 (497)
.++.+++.++.+++......+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|.++||.+++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 150 (365)
T TIGR00900 71 DLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL 150 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999888887100001999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHH
Q 010904 204 VL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEA 282 (497)
Q Consensus 204 l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (497)
+. ..|||+.|++.++..++..+..+...+++++..+.++.+++ ..++....++..
T Consensus 151 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~ 206 (365)
T TIGR00900 151 MYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNA------------------------VLRDTREGIKFV 206 (365)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchh------------------------HHHHHHhHHHHH
Confidence 88 57999999998876665544333322211111000000000 011123346678
Q ss_pred hhCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHH
Q 010904 283 WKLPRVAPFAFCLFFSKLVAYTFL-YWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSV 361 (497)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~ 361 (497)
+++|.++...+..++......... .+.|.|.++. +|.++.+.+.+.....++.+++.++.+++.||+++|+....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 282 (365)
T TIGR00900 207 LKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY----LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTG 282 (365)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 889999888887777777776666 8889999887 79999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhh
Q 010904 362 AFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAAL 441 (497)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 441 (497)
+..+.++....+.... . +.+...+..++.|++.+...+.......+.+|+ +.+|++.|+.+...+++..+
T Consensus 283 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~ 352 (365)
T TIGR00900 283 AIFVIGLAILVVGLTP-P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA--------ELLGRVFGAQFSLSHAAWPL 352 (365)
T ss_pred HHHHHHHHHHHHHhhc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHHHHH
Confidence 7666666555554421 1 355666777888988888888888888888886 44599999999999999999
Q ss_pred hhcccceeecc
Q 010904 442 GPLLAGYISTR 452 (497)
Q Consensus 442 ~~~~~g~l~~~ 452 (497)
+|.+.|++.|.
T Consensus 353 g~~~~g~l~~~ 363 (365)
T TIGR00900 353 GLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=282.90 Aligned_cols=373 Identities=16% Similarity=0.146 Sum_probs=279.1
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHH
Q 010904 53 PPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTI 132 (497)
Q Consensus 53 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~ 132 (497)
...+..|.+.+++ +.+ ..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+
T Consensus 35 ~~~~~~~~~~~~~----------~~s-------~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~ 97 (417)
T PRK10489 35 LLGVAVPVQIQMM----------TGS-------TLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFI 97 (417)
T ss_pred HHHHHHHHHHHHH----------HCC-------HHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHH
Confidence 3455677777777 656 88999999999999999999999999999999999999888888776
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh-hcCcce
Q 010904 133 IFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-EFGWGW 211 (497)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~gwr~ 211 (497)
..+.......++++.+++.|++.|++.+...++..+++.|++|+++|+++.++.....++|..+||.+++.+. ..+|++
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~ 177 (417)
T PRK10489 98 GLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAW 177 (417)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHH
Confidence 6553111112678999999999999988888888999999999999999999999999999999999999887 478999
Q ss_pred eeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHH
Q 010904 212 SFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPF 291 (497)
Q Consensus 212 ~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (497)
.|++.++..++. ++..+.+|+++++...++ + ..++....++..+++|.++..
T Consensus 178 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~---~------------------------~~~~~~~~~~~~~~~~~~~~~ 229 (417)
T PRK10489 178 NYGLAAAGTFIT-LLPLLRLPALPPPPQPRE---H------------------------PLRSLLAGFRFLLASPVVGGI 229 (417)
T ss_pred HHHHHHHHHHHH-HHHHHhCCCCCCCCcccc---c------------------------chHHHHHHHHHHHcChHHHHH
Confidence 999887776655 334455665433211000 0 001122345667788887666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHH
Q 010904 292 AFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPAL 371 (497)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 371 (497)
.+..++... ......++|.|+++. +|.++.+.+++.+...++.+++.++.+++.||.++++.+..+..+..+..+
T Consensus 230 ~~~~~~~~~-~~~~~~~~p~~~~~~----~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 304 (417)
T PRK10489 230 ALLGGLLTM-ASAVRVLYPALADEV----WQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVG 304 (417)
T ss_pred HHHHHHHHH-HHhHHHhhHHHHHhc----cCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHH
Confidence 555444333 346677899999997 799999999999999999999999999999997777777666666655554
Q ss_pred HHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeec
Q 010904 372 VLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYIST 451 (497)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 451 (497)
++.. .++.+...+..++.|++.+...+...+...+..|+ +.+|+++|+.+...++|..++|.+.|++.+
T Consensus 305 ~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--------~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~ 373 (417)
T PRK10489 305 LFGL---MPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPD--------EMLGRINGLWTAQNVTGDAIGAALLGGLGA 373 (417)
T ss_pred HHHc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH--------HHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence 4432 23444555666677777665555566677777775 445999999999999999999999999999
Q ss_pred c-CchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Q 010904 452 R-GWNSVFFMLIVSILFAGMFLIRIVKAEIREKLNEG 487 (497)
Q Consensus 452 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (497)
. |+...+...+++.++..++.....+ +.|+++.++
T Consensus 374 ~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 409 (417)
T PRK10489 374 MMTPVASASASGFGLLIIGVLLLLVLG-ELRRFRQTP 409 (417)
T ss_pred HhchhhHHHHHHHHHHHHHHHHHHhcc-ccccccccc
Confidence 8 8888887777666665555444333 333333333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=272.13 Aligned_cols=359 Identities=12% Similarity=0.022 Sum_probs=269.8
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHH
Q 010904 55 SIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIF 134 (497)
Q Consensus 55 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~ 134 (497)
....+.+.+|+ +.+ ..+.+++.+.+.+++.++++++|+++||+|||++++++.++.+++++++
T Consensus 23 ~~~~~~~~~~~----------~~s-------~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~ 85 (393)
T PRK11195 23 LFAAIALLKEL----------HYP-------DWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM 85 (393)
T ss_pred HHHHHHHHHHc----------CCc-------HHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence 44445556777 666 8889999999999999999999999999999999999999999999888
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhhcCcceeee
Q 010904 135 GLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFV 214 (497)
Q Consensus 135 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~gwr~~f~ 214 (497)
+++ .+. ++.|+++|++.+...|+..+++.|++|+++|++++++.+....+|.++||.+++.+.+..|+..+.
T Consensus 86 ~~~-----~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~ 157 (393)
T PRK11195 86 LFG-----IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALA 157 (393)
T ss_pred HHH-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776 554 778999999999999999999999999999999999999999999999999999999766888777
Q ss_pred hhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHH
Q 010904 215 LPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFC 294 (497)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (497)
+.+.+.++. ++..+.+||++++.+..+.+... ........++.++++|.+......
T Consensus 158 i~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~ 213 (393)
T PRK11195 158 VCALIYLLA-ALFNLFIPRLGARRPGQSWNPIA-----------------------LLRDFFHACRVLWRDKLGRFSLAG 213 (393)
T ss_pred HHHHHHHHH-HHHHhcCCCCcccccccCCCHHH-----------------------HHHHHHHHHHHHHhCchhHHHHHH
Confidence 766554433 44556677755332111110000 000011234577888887766555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHH
Q 010904 295 LFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLY 374 (497)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 374 (497)
..+............|.|+++. +|.++.+.|.+.....++.++++++.+++.||.++++.+..+. ..++..+.+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~----lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~ 288 (393)
T PRK11195 214 TTLFWGAGATLRFLVLAWAPVA----LGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMA 288 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----cCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHH
Confidence 5555555556667778888887 8999999999999999999999999999999988887776664 3333332222
Q ss_pred hhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeeccCc
Q 010904 375 RTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGW 454 (497)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~g~ 454 (497)
. ..+.+.....+++.|++.+...++..+...+..|++ ..+|++.++.+..++++..++..+.+.+...|.
T Consensus 289 ~---~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~-------~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (393)
T PRK11195 289 L---QHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVL-------VGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGV 358 (393)
T ss_pred H---HhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCccc-------ccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCC
Confidence 2 234455556666788888777777777776643321 224899999999999999999999987755577
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 010904 455 NSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
+..+++.+...+++..+.+.++.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
T PRK11195 359 PVVAVIVGFGLLVALAMALLWRW 381 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666666665555443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=279.42 Aligned_cols=346 Identities=25% Similarity=0.399 Sum_probs=275.7
Q ss_pred HHHHHHHhcCCCcccccc-ccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhh
Q 010904 42 FAYASFHASRKPPSIVKS-VLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFL 120 (497)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l 120 (497)
++.+..........+..| .+.+++ |++ ..+.+++.+++.++..+++++.|+++||+|||+++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~----------~~s-------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l 65 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEEL----------GLS-------PSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVL 65 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCS----------TTT-------SHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeE
Confidence 344445555555677778 888998 888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHH
Q 010904 121 VFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVL 200 (497)
Q Consensus 121 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~ 200 (497)
..+.++.+++.++..++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.....++|.+++|.+
T Consensus 66 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l 140 (352)
T PF07690_consen 66 IIGLLLFALGSLLLAFA-----SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLL 140 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhhhhhhHHHHhhhh-----hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccch
Confidence 99999999997777776 7777999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhh-h
Q 010904 201 ASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAI-G 278 (497)
Q Consensus 201 ~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 278 (497)
++.+. ..+||+.|++.+++.++..++..++.++++++...+++.++. .+.+++.. .
T Consensus 141 ~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~ 198 (352)
T PF07690_consen 141 GGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE----------------------SKKPKPLKPG 198 (352)
T ss_dssp HHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT------------------------HHHCCCH-
T ss_pred hhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccccc----------------------cccccccccc
Confidence 99998 678999999999999888665556666555443322221110 00001111 2
Q ss_pred HHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC-cchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhh
Q 010904 279 FLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLS-HKTAGILSTIFDIGGVFGGILAGLISDMIEARA 357 (497)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 357 (497)
++.++++|.+|......++..........+.|.|+++. +|++ ..+.+.......+..+++.++.++++||+++|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 274 (352)
T PF07690_consen 199 FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEV----LGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR 274 (352)
T ss_dssp CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 56777788888566666666667778899999997777 7999 789999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhh
Q 010904 358 VTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSV 437 (497)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 437 (497)
..........+....+.......+..+.....++.|++.+...+.......+.+|+ +.+|++.|+.+...++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~ 346 (352)
T PF07690_consen 275 RLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPP--------EYRGTAFGLFNSIGSL 346 (352)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHT--------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHH
Confidence 77776666666665554433233455666677788998888899999999999886 4459999999999999
Q ss_pred hhhhhh
Q 010904 438 GAALGP 443 (497)
Q Consensus 438 g~~~~~ 443 (497)
++.++|
T Consensus 347 ~~~igP 352 (352)
T PF07690_consen 347 GGIIGP 352 (352)
T ss_dssp HHHHHH
T ss_pred HHHHCC
Confidence 999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=271.80 Aligned_cols=358 Identities=15% Similarity=0.184 Sum_probs=272.2
Q ss_pred HHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCC
Q 010904 37 LVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDL 116 (497)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr 116 (497)
+..++++.++.........+..|.+.+|+ |++ ..+.|++.+.+.+++.+++++.|+++||+||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~----------~~s-------~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~ 70 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQE----------HLP-------TWQVGVVSSSYFTGNLVGTLLAGYVIKRIGF 70 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHc----------CCC-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34455666667777788888999999998 888 9999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHH
Q 010904 117 RLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNII 196 (497)
Q Consensus 117 r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 196 (497)
|+++..+.++.+++.++++++ +|++.++++|+++|++.+...+...+.+.+..++++|+++++++....++|..+
T Consensus 71 k~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 145 (381)
T PRK03633 71 NRSYYLASLIFAAGCAGLGLM-----VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVL 145 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 999999999999999999998888888889999999999999999999999999
Q ss_pred HHHHhhhHhhcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhh
Q 010904 197 GSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQA 276 (497)
Q Consensus 197 g~~~~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (497)
||.+++.+.+..++..++..++..... +.. .+.+.+++..+ + + +.
T Consensus 146 g~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~----~-~----------------------------~~ 190 (381)
T PRK03633 146 GQLLVSKVSTELMSVLPWVTGLVLAAI-LPL-LFTRILNQQAE----N-H----------------------------DS 190 (381)
T ss_pred HHHHHhcccccccchHHHHHHHHHHHH-HHH-HHhcccCCCCC----C-C----------------------------CC
Confidence 999999887543333333333322221 112 22222111100 0 0 01
Q ss_pred hhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhh
Q 010904 277 IGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEAR 356 (497)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 356 (497)
.+.++.+++|.++......+...........++|.|+++ .|.++.+.+.+.+...++.+++++..|++.||+++|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 265 (381)
T PRK03633 191 TSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-----QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL 265 (381)
T ss_pred CCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH
Confidence 124567788888765554555555555667789999987 489999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhh
Q 010904 357 AVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGS 436 (497)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 436 (497)
+.+..+.....++...... . ........+.|++.....+.......+..|++ +++...+..+...+
T Consensus 266 ~~l~~~~~~~~~~~~~~~~-----~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 331 (381)
T PRK03633 266 LVLRVQVFVVILGSIAMLS-----Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHH--------ELVAMNQALLLSYT 331 (381)
T ss_pred HHHHHHHHHHHHHHHHHhh-----h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHH--------HHHHHHHHHHHHHH
Confidence 9887776666655443321 1 12223444556555566677777777777653 33667777788889
Q ss_pred hhhhhhhcccceeecc-CchHHHHHHHHHHHHHHH
Q 010904 437 VGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGM 470 (497)
Q Consensus 437 ~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~ 470 (497)
+|..++|.+.|++.|+ +++..|.+.+.+.++..+
T Consensus 332 lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 332 VGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLL 366 (381)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 9999999999999988 888888887777765543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=271.83 Aligned_cols=351 Identities=17% Similarity=0.157 Sum_probs=269.1
Q ss_pred cccccc-ccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHH-HHHHHHHHH
Q 010904 54 PSIVKS-VLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVF-GMMGSGLFT 131 (497)
Q Consensus 54 ~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~i~~ 131 (497)
..+..| .+.+++ |++ ..+.|++.+++.+...+.+++.|+++||+||||.++. +.++.+++.
T Consensus 16 ~~~~l~~~l~~~~----------g~s-------~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~ 78 (375)
T TIGR00899 16 QFPTLSLFLSEEV----------RAR-------PAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALAC 78 (375)
T ss_pred HhhHHHHHHHccc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 344444 467888 888 9999999999999999999999999999999987654 566667777
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhh--HHHHHHHhhhHHHHHHHHhhhHh-hcC
Q 010904 132 IIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLI--MGVWNSHTSIGNIIGSVLASGVL-EFG 208 (497)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~g~~~~~~l~-~~g 208 (497)
++++++ ++++.+++.|++.|.+.+...|...+++.|+.|+++|++. .+......++|..+||.+++.+. ..|
T Consensus 79 ~~~~~~-----~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~ 153 (375)
T TIGR00899 79 LLFAWN-----RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG 153 (375)
T ss_pred HHHHhc-----chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc
Confidence 888888 9999999999999988888888888999999887777654 68888889999999999999988 579
Q ss_pred cceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCch
Q 010904 209 WGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRV 288 (497)
Q Consensus 209 wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (497)
||+.|++.+++.++..++.++++||.|++...+. + ..+.++.+++|.+
T Consensus 154 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------------------------~~~~~~~~~~~~~ 201 (375)
T TIGR00899 154 FTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL---T-----------------------------RLEVRGLLASRDT 201 (375)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc---C-----------------------------cchhhhhhcCcch
Confidence 9999999998887776777777887654321100 0 0012345677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHH
Q 010904 289 APFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSI 368 (497)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 368 (497)
+......++..........+.|.|+++. +|.++.+.+.......+..+++.++.|++.||+++|+.+..+.....+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~ 277 (375)
T TIGR00899 202 RLLFVACTLMWGCNILYIINMPLLIIHE----LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVA 277 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHH
Confidence 7666655555555556667789998877 799999999888877777888889999999999999988776555444
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccce
Q 010904 369 PALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGY 448 (497)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 448 (497)
....... .++.+......++.|++.+...+.......+..|+ +++++.++.+...++|..++|.+.|.
T Consensus 278 ~~~~~~~---~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~g~~~~g~ 345 (375)
T TIGR00899 278 FYTGLAA---DNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG---------RAGAATTLYTNTGRVGWIIAGSVGGI 345 (375)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc---------hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 13444555555666777766666666666666543 23788999999999999999999999
Q ss_pred eecc-CchHHHHHHHHHHHHHHHHHHH
Q 010904 449 ISTR-GWNSVFFMLIVSILFAGMFLIR 474 (497)
Q Consensus 449 l~~~-g~~~~~~~~~~~~~~~~~~~~~ 474 (497)
+.+. +|+..|++.+++.+++.++...
T Consensus 346 ~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 346 LAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 9888 9999999888887777665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=271.36 Aligned_cols=367 Identities=14% Similarity=0.214 Sum_probs=277.0
Q ss_pred HHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCcc-----chhhHHHHHHHHHHHHhhccccccccC
Q 010904 41 FFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHR-----LGELDLAFLTSYSVGMYFAGHVGDTID 115 (497)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~s~~~~~~~~~~~~~g~l~dr~G 115 (497)
+++.+..........+..|.+.+++ |++ ..+ .|++.+.+.++..++++++|+++||+|
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g 82 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFLPLYVEQL----------GVT-------GHSALNMWSGLVFSITFLFSAIASPFWGGLADRKG 82 (408)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHh----------CCc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Confidence 3344444444445666778888887 766 433 488999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHH
Q 010904 116 LRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNI 195 (497)
Q Consensus 116 rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 195 (497)
||+++..+.++.+++.++++++ ++++.+++.|++.|++.+ ..+....++.|++|+++|++++++......+|..
T Consensus 83 ~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (408)
T PRK09874 83 RKIMLLRSALGMGIVMVLMGLA-----QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGAL 156 (408)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999998887 999999999999999755 5677788899999999999999999999999999
Q ss_pred HHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCch
Q 010904 196 IGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSL 274 (497)
Q Consensus 196 ~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (497)
++|.+++.+. ..+||+.|++.+++.++..+..++++||+++....+ ++ .
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------------------------~ 206 (408)
T PRK09874 157 LGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK---EM---------------------------L 206 (408)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccch---hh---------------------------h
Confidence 9999999887 479999999999888777666667776653221100 00 0
Q ss_pred hhhhHHHHhhCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCc---chhhHHHhhhhhhhhhhhhhhHHhH
Q 010904 275 QAIGFLEAWKLPRVAPFA-FCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSH---KTAGILSTIFDIGGVFGGILAGLIS 350 (497)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~---~~~g~~~~~~~~~~~~~~~~~g~l~ 350 (497)
+.....+.+++|+++... ...............+++.|..+. .+... ...+.+....+++.+++.+..|+++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~ 282 (408)
T PRK09874 207 HMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVREL----AGNVSNIAFISGMIASVPGVAALLSAPRLGKLG 282 (408)
T ss_pred HHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111234566777765533 333333444445667788888875 22222 1245566667788888999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHH
Q 010904 351 DMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAI 430 (497)
Q Consensus 351 dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 430 (497)
||+++|+.+..+.....+..+..... .+.+...+..++.|++.+...+...+...+..++ +.+|+.+++
T Consensus 283 dr~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~ 351 (408)
T PRK09874 283 DRIGPEKILITALIFSVLLLIPMSFV---QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSN--------QIAGRIFSY 351 (408)
T ss_pred hccccchhHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCc--------ccceeeehH
Confidence 99999998887776665555444332 3445556666778888888777777777766665 334889999
Q ss_pred Hhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHH
Q 010904 431 IDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 431 ~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
.+....+|..++|.+.|.+.+. +|+..|++.+++.+++.+.....
T Consensus 352 ~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 352 NQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888 99999999988888877665543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=283.59 Aligned_cols=380 Identities=14% Similarity=0.193 Sum_probs=277.0
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHh
Q 010904 56 IVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFG 135 (497)
Q Consensus 56 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~ 135 (497)
...|.+.+|+ +++- ++..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++++
T Consensus 110 ~~~~~i~~e~----------~l~c----~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~ 175 (505)
T TIGR00898 110 TFSSTIVTEW----------DLVC----EDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTA 175 (505)
T ss_pred cccccEEEEe----------ccee----chHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 4667788877 5541 1267789999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhhcCcceeeeh
Q 010904 136 LAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFVL 215 (497)
Q Consensus 136 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~gwr~~f~~ 215 (497)
++ +|++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+ ||+.|++
T Consensus 176 ~~-----~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--wr~~~~~ 248 (505)
T TIGR00898 176 FS-----PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD--WRWLQLA 248 (505)
T ss_pred Hc-----ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHH
Confidence 98 9999999999999999999999999999999999999999999999999999999998877654 9999999
Q ss_pred hhHHHHHHHHHHHhheecCCcCCCCCCChhhhh-hhhh---ccCCcccccccccc-ccCCCCchhhhhHHHHhhCCchHH
Q 010904 216 PGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVE-LMNV---ENGDKVENEEVGLL-ESGSSGSLQAIGFLEAWKLPRVAP 290 (497)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 290 (497)
.+++.++..+. .+++||+|++...+.+.+++. ...+ .+......+..... +.+.+..+.+..+++++++|.++.
T Consensus 249 ~~i~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 327 (505)
T TIGR00898 249 VSLPTFLFFLL-SWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRK 327 (505)
T ss_pred HHHHHHHHHHH-HHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHH
Confidence 99888776544 478899988754444433321 1111 11111000000000 000011112346788999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHH
Q 010904 291 FAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPA 370 (497)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 370 (497)
..+...+..+........++.+..+ .+.+. .......++..+++.++.+++.||+|||+.+.....+.+++.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~ 399 (505)
T TIGR00898 328 TTLCLMMLWFTTAFSYYGLVLDLGN-----LGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVAL 399 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc-----cCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7766655544443333333443333 34443 233445567788899999999999999999988888877776
Q ss_pred HHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceee
Q 010904 371 LVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYIS 450 (497)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 450 (497)
+++.... ....+......++.+++.+..++....+..|.+|++ .|+++.|+.+....+|++++|.+.+ +.
T Consensus 400 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--------~r~~~~g~~~~~~~ig~~i~p~i~~-~~ 469 (505)
T TIGR00898 400 LLLLFVP-VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV--------VRNLGVGVCSTMARVGSIISPFLVY-LG 469 (505)
T ss_pred HHHHHcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH--------HHhhhHhHHHHHHHHHHHHHhHHHH-HH
Confidence 6655432 222234444555666666677777888888888874 4499999999999999999999998 54
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHH
Q 010904 451 TRGWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 451 ~~g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
+.++...+.+.++..+++.++.+++
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 470 EKWLFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHcC
Confidence 4466777777777777776665544
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=269.14 Aligned_cols=351 Identities=13% Similarity=0.094 Sum_probs=260.3
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Q 010904 76 GWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFC 155 (497)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~ 155 (497)
|++ +.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++.+++++++.... ...++++.+++.|++.
T Consensus 44 g~s-------~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~i~ 115 (402)
T TIGR00897 44 GLS-------PQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFG-LGHANYPLILLFYGIR 115 (402)
T ss_pred CCC-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh-ccCccHHHHHHHHHHH
Confidence 888 99999999999999999999999999999999999999999998877653210 0015788899999999
Q ss_pred hhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHH-HHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheec
Q 010904 156 GLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGN-IIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVV 233 (497)
Q Consensus 156 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~ 233 (497)
|++.+...+...+.+.+++|+++|++++|+.+.+.++|. +++|.+++.+. ..||+..++......++..++..++.++
T Consensus 116 G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (402)
T TIGR00897 116 GLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKD 195 (402)
T ss_pred HcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999888888888889999999999999999999999997 68999988877 4787666555444433333344444444
Q ss_pred CCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010904 234 RPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYI 313 (497)
Q Consensus 234 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (497)
.++.... ++ ++ +..+....++.++|+|.+|...+..++.....++..++.|.|+
T Consensus 196 ~~~~~~~-~~-~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 249 (402)
T TIGR00897 196 IFTPQHM-QT-RE------------------------KFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFV 249 (402)
T ss_pred CCCcccc-cC-Cc------------------------chhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221110 00 00 0011123456789999999888888888888888899999998
Q ss_pred HHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHH-HHHHHHHHHHHHHhh--ccCchhHHHHHHHH
Q 010904 314 RHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSV-AFLLLSIPALVLYRT--YGSISMITNIPLMF 390 (497)
Q Consensus 314 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 390 (497)
++ +|+++.+.+.+.....++.+++.+..|+++||++||+.... ......+....+... ....+.+...+..+
T Consensus 250 ~~-----~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 324 (402)
T TIGR00897 250 AE-----LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAI 324 (402)
T ss_pred HH-----cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHH
Confidence 76 69999999999899999999999999999999998876542 223333322222211 11234445556666
Q ss_pred HHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHH
Q 010904 391 LSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAG 469 (497)
Q Consensus 391 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~ 469 (497)
+.|++.+...+ ......+ .++ +++|++.|+.+...++++.++|.+.|.+.|. |+...+++.+++.+++.
T Consensus 325 ~~G~~~~~~~~-~~~~~~~-~~~--------~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~ 394 (402)
T TIGR00897 325 ALGIFLAGYVP-LAAVFPT-LAP--------KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSA 394 (402)
T ss_pred HHHHHHHHHHH-HHHHHHh-hCc--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 77777665433 3344333 333 3459999999999999999999999999998 99999999988888777
Q ss_pred HHHHHH
Q 010904 470 MFLIRI 475 (497)
Q Consensus 470 ~~~~~~ 475 (497)
+...+.
T Consensus 395 ~~~~~~ 400 (402)
T TIGR00897 395 FLTAFI 400 (402)
T ss_pred HHHHHh
Confidence 766554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=267.27 Aligned_cols=341 Identities=15% Similarity=0.126 Sum_probs=265.1
Q ss_pred HHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHH
Q 010904 46 SFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMM 125 (497)
Q Consensus 46 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 125 (497)
...+......+..|.+.+++ |++ +.+.+++.+.+.+++.++++++|+++||+|||+++..+.+
T Consensus 19 ~~~~~~~~~~p~~~~i~~~~----------~~s-------~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~ 81 (394)
T PRK11652 19 VGQMAQTIYVPAIADMARDL----------NVR-------EGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMS 81 (394)
T ss_pred HHHHHHHHHhccHHHHHHHh----------CCC-------HHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHH
Confidence 33344445566778899998 888 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh
Q 010904 126 GSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL 205 (497)
Q Consensus 126 ~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 205 (497)
+..++.+++.++ ++++.+++.|++.|++.+...+....+..|++++++|+++.++...+..+|..++|.+++.+.
T Consensus 82 ~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 156 (394)
T PRK11652 82 IFILGTLVALFA-----HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT 156 (394)
T ss_pred HHHHHHHHHHHH-----ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888 899999999999999998888888889999999999999999999999999999999999888
Q ss_pred h-cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhh
Q 010904 206 E-FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWK 284 (497)
Q Consensus 206 ~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (497)
+ .|||+.|++.+++.++..++..++.||+++.... +.+....+++.++
T Consensus 157 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~ 205 (394)
T PRK11652 157 TLFGWRACYLFLLLLGAGVTFSMARWMPETRPADAR-------------------------------RTRVLASYRTLLS 205 (394)
T ss_pred hccChHHHHHHHHHHHHHHHHHHHHhCCccCccccc-------------------------------hhHHHHHHHHHHc
Confidence 4 7999999998887777666666667765432110 0012334667888
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHH
Q 010904 285 LPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFL 364 (497)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~ 364 (497)
+|.++...+..+........+..+.+.++++. +|+++.+.++......++.+++.++.+++.||.+++........
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~ 281 (394)
T PRK11652 206 NRRFNCYLLMLIGTLAGIAVFEACSGVLMGAV----LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICC 281 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhChHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888766665555555556667778888887 79999999999888888999999999999999984433332222
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhc
Q 010904 365 LLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPL 444 (497)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 444 (497)
................+.+.......+.+++.+..++...+...+..|. ++|++.++.+....+|+.+++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~~~lg~~~~~~ 352 (394)
T PRK11652 282 LLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY---------LAGTAGALLGGLQNIGSGLAAL 352 (394)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------cchHHHHHHHHHHHHHHHHHHH
Confidence 2222222221111122344555666777787777788888777776653 3389999999999999999999
Q ss_pred ccceeecc
Q 010904 445 LAGYISTR 452 (497)
Q Consensus 445 ~~g~l~~~ 452 (497)
+.+.+.+.
T Consensus 353 ~~~~~~~~ 360 (394)
T PRK11652 353 LSAMLPQT 360 (394)
T ss_pred HHHHccCC
Confidence 99888765
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=267.90 Aligned_cols=333 Identities=11% Similarity=0.093 Sum_probs=261.2
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHH
Q 010904 51 RKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLF 130 (497)
Q Consensus 51 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~ 130 (497)
...+.+..|.+.+++ +++ +.+.+++.+++.+++.++++++|+++||+|||+++..+.++.+++
T Consensus 22 ~~~~~p~~~~i~~~~----------~~s-------~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 84 (401)
T PRK11043 22 TDMYLPAFKAIQADL----------QTS-------ASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALG 84 (401)
T ss_pred HHHHHhhHHHHHHHH----------CCC-------HHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHH
Confidence 344556678888988 888 999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh-hcCc
Q 010904 131 TIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-EFGW 209 (497)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~gw 209 (497)
.++++++ ++++.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+. ..||
T Consensus 85 ~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~ 159 (401)
T PRK11043 85 SLGMLWV-----ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGW 159 (401)
T ss_pred HHHHHHh-----cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 9999998 999999999999999988888888899999999999999999999999999999999999888 4799
Q ss_pred ceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchH
Q 010904 210 GWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVA 289 (497)
Q Consensus 210 r~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (497)
|+.|++.+++.++..++.+ .++|++++.+ + ++.+..+++.+++|+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~----------------------------~~~~~~~~~~~~~~~~~ 206 (401)
T PRK11043 160 QAIFATLFAITLLLILPTL-RLKPSKKARK----Q----------------------------SQDALTFKQLLKSKTYL 206 (401)
T ss_pred HHHHHHHHHHHHHHHHHHH-HcCCCCCccc----c----------------------------chHHHHHHHHHcChhHH
Confidence 9999999888777655443 4444332110 0 01223467888899888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHH
Q 010904 290 PFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIP 369 (497)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 369 (497)
...+...+.....+....+.|.++++ +|+++.+.++......++.+++.++.+++.||+++|+..........++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~p~~~~~-----~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~ 281 (401)
T PRK11043 207 GNVLIFAACSAAFFAWLTGSPFILEQ-----MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVS 281 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 76666666666666777888988876 5999999999888888899999999999999999888765554444443
Q ss_pred HHHHHh--hccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccc
Q 010904 370 ALVLYR--TYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAG 447 (497)
Q Consensus 370 ~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g 447 (497)
...+.. .....+.+.......+.|++.+..++.......+..|+ .+|++.|+.+..+..++..++.+.|
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~~~g~~~~~~~~~~~~~~~~~g 352 (401)
T PRK11043 282 VIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ---------ATGKAAALQNTLQLGLCFLASLLVS 352 (401)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc---------cChHHHHHHHHHHHHHHHHHHHHHH
Confidence 332221 11123344444555666777777777766665555542 3399999999999999999999999
Q ss_pred eeecc
Q 010904 448 YISTR 452 (497)
Q Consensus 448 ~l~~~ 452 (497)
.+.+.
T Consensus 353 ~l~~~ 357 (401)
T PRK11043 353 ALIST 357 (401)
T ss_pred HccCC
Confidence 98876
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=267.88 Aligned_cols=349 Identities=16% Similarity=0.126 Sum_probs=255.3
Q ss_pred cccccc-ccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHH
Q 010904 54 PSIVKS-VLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTI 132 (497)
Q Consensus 54 ~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~ 132 (497)
..+.+| ++.+|+ |++ ..++|++.+++.+++.++++++|+++||+|||++++.+.+...++.+
T Consensus 34 ~~p~l~~~l~~~l----------g~s-------~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~ 96 (392)
T PRK12382 34 PLPVIPLFVHHDL----------GFG-------NTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGL 96 (392)
T ss_pred HhhhhhHHHHHhc----------CCc-------HHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHH
Confidence 344555 467888 888 99999999999999999999999999999999999999888877655
Q ss_pred HHhhh---hhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh-hcC
Q 010904 133 IFGLA---YWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-EFG 208 (497)
Q Consensus 133 ~~~~~---~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~g 208 (497)
....+ .....++++.+++.|+++|++.+...+...+++.|++|+++|++++++++.+..+|..+||++++.+. ..|
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g 176 (392)
T PRK12382 97 AYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG 176 (392)
T ss_pred HHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 43221 11112688999999999999999988988999999999999999999999999999999999999887 479
Q ss_pred cceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCch
Q 010904 209 WGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRV 288 (497)
Q Consensus 209 wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (497)
||+.+.+..+..++. +.+.++.|+.+..++ + +. +.++.++ .+
T Consensus 177 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~-------------------------~~----~~~~~~~--~~ 218 (392)
T PRK12382 177 FAALALTTMVLPLLA----WAFNGTVRKVPAHAG---E-------------------------RP----SLWSVVG--LI 218 (392)
T ss_pred hHHHHHHHHHHHHHH----HHHHHhccCCCCCcc---c-------------------------Cc----hHHHHHH--HH
Confidence 998766544433222 222232222111000 0 00 0111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHH
Q 010904 289 APFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSI 368 (497)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 368 (497)
|...+...+..........+.|.|+++. |++. .+.......++.++++++.|++.||+++|+.+..+..+..+
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~ 291 (392)
T PRK12382 219 WKPGLGLALQGVGFAVIGTFVSLYFASK-----GWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETV 291 (392)
T ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHhc-----CCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHH
Confidence 2212222333344555667888888774 6553 45666677788889999999999999999988887777776
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccce
Q 010904 369 PALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGY 448 (497)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 448 (497)
..+++... .+.+...+..++.|++.+...+.......+..++ +++|++.|+.+....+|..++|.+.|+
T Consensus 292 ~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~ig~~~~g~ 360 (392)
T PRK12382 292 GLLLLWLA---PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPS--------QVRGTALGGYAAFQDIAYGVSGPLAGM 360 (392)
T ss_pred HHHHHHHc---ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554432 3445555666777887777777777777777775 445999999999999999999999999
Q ss_pred eecc-CchHHHHHHHHHHHHHHHHHHHH
Q 010904 449 ISTR-GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 449 l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
+.|+ ||+..|.+.+++.+++.++.+..
T Consensus 361 l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 361 LATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 9998 99999999988888777665543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=266.41 Aligned_cols=348 Identities=15% Similarity=0.100 Sum_probs=264.5
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHH
Q 010904 54 PSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTII 133 (497)
Q Consensus 54 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~ 133 (497)
++...+++.+++ |++ ..++|++.+.+.++..+.+++.|+++||+|||+++..+.++.+++.++
T Consensus 30 ~~~~~~~~~~~~----------g~s-------~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~ 92 (400)
T PRK11646 30 FPLISIRFVDQL----------GWA-------AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFAT 92 (400)
T ss_pred HHHHHHHHHHHh----------CCc-------HHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 445555677888 888 999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhhcCcceee
Q 010904 134 FGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSF 213 (497)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~gwr~~f 213 (497)
+.++ ++++.+++.|+++|++.+...|...+++.|++|+++|++++++.....++|..+||.+++.+.++|||+.|
T Consensus 93 ~~~~-----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f 167 (400)
T PRK11646 93 MAIA-----HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVC 167 (400)
T ss_pred HHHh-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9988 89999999999999999988899999999999999999999999999999999999999999888999999
Q ss_pred ehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHH
Q 010904 214 VLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAF 293 (497)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (497)
++.++..++..++..++.||.++.. .+ ++....+++.+++|.++...+
T Consensus 168 ~~~~~~~~~~~i~~~~~~~~~~~~~----~~----------------------------~~~~~~~~~~~~~~~~~~~~~ 215 (400)
T PRK11646 168 ATGAVLFVLAAAFNAWLLPAYKLST----VR----------------------------TPVREGMTRVLRDKRFVTYVL 215 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCcccccc----cc----------------------------hhhHHHHHHHHcCchHHHHHH
Confidence 9988877776555555555421100 00 001224667888998877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHH-hhhhhhHHHHHHHHHHHHHHH
Q 010904 294 CLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISD-MIEARAVTSVAFLLLSIPALV 372 (497)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-r~~~~~~~~~~~~~~~~~~~~ 372 (497)
..+...........++|.|+++. +.++.+.+.+.+...++.+.+....+++.| |++.++.+..+..+.+++.++
T Consensus 216 ~~~~~~~~~~~~~~~~p~~~~~~-----~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 290 (400)
T PRK11646 216 TLTGYYMLAVQVMLMLPIMVNDI-----AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFP 290 (400)
T ss_pred HHHHHHHHHHHHHHhhhhhHHhh-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 55554444444567889999886 447788888888877776665555566665 455565566666666655544
Q ss_pred HHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc
Q 010904 373 LYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR 452 (497)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 452 (497)
+... ++.+.......+.+.+.+...+...+...+..|++ ++|++.|+.+....+|..++|.+.|++.|+
T Consensus 291 l~~~---~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~--------~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 291 IGMV---SNLQQLFTLICLFYIGSIIAEPARETLSASLADAR--------ARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred HHHh---hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcc--------cchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 4332 33444444445566666666667777788888764 449999999999999999999999999987
Q ss_pred C-----chHHHHHHHHHHHHHHHH
Q 010904 453 G-----WNSVFFMLIVSILFAGMF 471 (497)
Q Consensus 453 g-----~~~~~~~~~~~~~~~~~~ 471 (497)
+ ....++..++..+++.+.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 360 GKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HhhcCCcchHHHHHHHHHHHHHHH
Confidence 2 345555555555555444
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=264.05 Aligned_cols=347 Identities=16% Similarity=0.217 Sum_probs=260.9
Q ss_pred HHHHHHHHHHhcCCCccccccc-cCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCc
Q 010904 39 ITFFAYASFHASRKPPSIVKSV-LGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLR 117 (497)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr 117 (497)
+.++++++.+.....+++..|. +.+++ |++ ..+.+++.+.+.+++.+++++.|+++||+|||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~s-------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r 67 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDL----------GLS-------TAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR 67 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHh----------CCC-------HHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch
Confidence 4556666666667778888895 98999 888 99999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHH
Q 010904 118 LFLVFGMMGSGLFTIIFGLAYWLSVH-LLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNII 196 (497)
Q Consensus 118 ~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 196 (497)
+.++++.++.+++.++++++ + +++.+++.|+++|++.+. .+....+++|++|+++|++++++.....++|..+
T Consensus 68 ~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 141 (366)
T TIGR00886 68 YTTTLSLLLLAIPCLWAGLA-----VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGV 141 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHH
Confidence 99999999999999999998 8 999999999999998654 5667899999999999999999999888888888
Q ss_pred HHHHhhhHhh-----------cCcceee-ehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCcccccccc
Q 010904 197 GSVLASGVLE-----------FGWGWSF-VLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVG 264 (497)
Q Consensus 197 g~~~~~~l~~-----------~gwr~~f-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
++.+++.+.. .+||+.| +..+++..+..++.+...+|+|+....+++.+. .+. ..
T Consensus 142 ~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~--- 208 (366)
T TIGR00886 142 AQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSF-------KGA---RW--- 208 (366)
T ss_pred HHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhccc-------ccc---cc---
Confidence 8877766553 2799999 444666666556666666766543211100000 000 00
Q ss_pred ccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhh
Q 010904 265 LLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGI 344 (497)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 344 (497)
...++.....++.+++|+++...+..++.....+....+.|.|+++. +|+++.+++.+.....+..+++++
T Consensus 209 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~ 279 (366)
T TIGR00886 209 -----SVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQ----FGLSKVTAGAYASLGGLLGSLARP 279 (366)
T ss_pred -----cccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHHHHHHHhh
Confidence 00011112466788999999888888877777788889999999988 899999999999999999999999
Q ss_pred hhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCc-hhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccch
Q 010904 345 LAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSI-SMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRA 423 (497)
Q Consensus 345 ~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (497)
+.|+++||+++|+....+......+..++....... +.+.......+.++..+...........+..| ++
T Consensus 280 ~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------~~ 350 (366)
T TIGR00886 280 LGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR---------RA 350 (366)
T ss_pred ccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch---------hh
Confidence 999999999998877777666655554444322211 34444444444555555555556666666554 34
Q ss_pred hHHHHHHHhhhhhhhh
Q 010904 424 LATVTAIIDGTGSVGA 439 (497)
Q Consensus 424 ~g~~~g~~~~~~~~g~ 439 (497)
+|+++|+.+..+++|+
T Consensus 351 ~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 351 TGAVSGLVGAIGNLGG 366 (366)
T ss_pred cccHHHHHHHhccCCC
Confidence 4999999998887763
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=262.74 Aligned_cols=332 Identities=15% Similarity=0.159 Sum_probs=253.4
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHH
Q 010904 54 PSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTII 133 (497)
Q Consensus 54 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~ 133 (497)
+.+..|.+.+++ |++ ..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++
T Consensus 10 ~~p~~~~~~~~~----------~~s-------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~ 72 (377)
T PRK11102 10 YLPALPVIAADF----------GVS-------AGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVA 72 (377)
T ss_pred HhccHHHHHHHh----------CCC-------HHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHH
Confidence 456778888888 888 999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh-cCccee
Q 010904 134 FGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE-FGWGWS 212 (497)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~gwr~~ 212 (497)
+.++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++......+|..++|.+++.+.+ .+||+.
T Consensus 73 ~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 147 (377)
T PRK11102 73 CALA-----QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAI 147 (377)
T ss_pred HHHH-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH
Confidence 9998 9999999999999999999999999999999999999999999999999999999999998884 799999
Q ss_pred eehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHH
Q 010904 213 FVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFA 292 (497)
Q Consensus 213 f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (497)
|++.+++.++..++..+++||+++..+.++. +.++....+++.+++|.++...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~ 200 (377)
T PRK11102 148 FWVLALAAILAAALVFFFIPETLPKERRQPF---------------------------HLRTTIRNFASLFRHKRVLGYM 200 (377)
T ss_pred HHHHHHHHHHHHHHHHHhCCccCcccccCCC---------------------------ChHHHHHHHHHHHcChHHHHHH
Confidence 9998888887766666777765432111000 0011223456788899888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHH
Q 010904 293 FCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALV 372 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 372 (497)
+..++.....+....+.|.++.+. +|+++.+.+.+.....++.+++.++.+++.||+++|+.+..+..+..+..+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~ 276 (377)
T PRK11102 201 LASGFSFAGMFSFLTAGPFVYIEL----NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIW 276 (377)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHH----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 777776666777777888888887 7999999999999999999999999999999999999888777654443333
Q ss_pred HHhh-ccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhh-hhhhhhhhcccc
Q 010904 373 LYRT-YGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTG-SVGAALGPLLAG 447 (497)
Q Consensus 373 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~~~~~~~g 447 (497)
+... ..+.+.+...+...+.+...+...........+..| +.+|++.++.+... .++..+++.+.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 277 LVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP---------HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc---------ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2221 111223333333333333333333333344444433 33478888877664 466666666544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=263.96 Aligned_cols=265 Identities=14% Similarity=0.140 Sum_probs=221.0
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHH
Q 010904 55 SIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIF 134 (497)
Q Consensus 55 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~ 134 (497)
.+..|.+.+++ |.+ +.+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 23 ~~~lp~~~~~~----------~~s-------~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~ 85 (392)
T PRK10473 23 LVGLPRIAADL----------NAS-------EAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLC 85 (392)
T ss_pred hhhHHHHHHHh----------CCC-------HHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 35688999988 887 9999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh-hcCcceee
Q 010904 135 GLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-EFGWGWSF 213 (497)
Q Consensus 135 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~gwr~~f 213 (497)
.++ ++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+. ..|||+.|
T Consensus 86 ~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~ 160 (392)
T PRK10473 86 SLA-----ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLF 160 (392)
T ss_pred HHh-----CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHH
Confidence 988 899999999999999999989999999999999999999999999999999999999998877 57999999
Q ss_pred ehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHH
Q 010904 214 VLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAF 293 (497)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (497)
++.+++.++..++..+.+||+++.... + + .......++.+++|+++...+
T Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~~~~---~-~--------------------------~~~~~~~~~~~~~~~~~~~~~ 210 (392)
T PRK10473 161 YTMAAMGILVLLLSLFILKETRPARAP---A-A--------------------------SSKPRENSESLLNRFFLSRLV 210 (392)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccC---C-c--------------------------cchHHHHHHHHhCHHHHHHHH
Confidence 999988888777766777765432110 0 0 001123456778888776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHH
Q 010904 294 CLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVL 373 (497)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 373 (497)
...+.......+..+.|.++++. +|+++.+.+.......++.+++.++.+++.||+++|+.+..+..+..++.+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 286 (392)
T PRK10473 211 ITTLSVTVILTFVNTSPVLLMEQ----MGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITL 286 (392)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 55555555555666778888776 79999999999999999999999999999999999999888877776666555
Q ss_pred Hh
Q 010904 374 YR 375 (497)
Q Consensus 374 ~~ 375 (497)
..
T Consensus 287 ~~ 288 (392)
T PRK10473 287 AL 288 (392)
T ss_pred HH
Confidence 44
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=265.08 Aligned_cols=363 Identities=11% Similarity=0.076 Sum_probs=265.9
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccccc-----CCchh-hHHHHHH
Q 010904 53 PPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTI-----DLRLF-LVFGMMG 126 (497)
Q Consensus 53 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~ 126 (497)
..+...|...++. |.+ ..++|.+ +.....+ ++.+++|+++||+ ||||. ++.+.+.
T Consensus 30 ~~~~~l~~~l~~~----------g~~-------~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~ 90 (491)
T PRK11010 30 LTSGTLQAWMTVE----------NID-------LKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLL 90 (491)
T ss_pred HHHHHHHHHHHhC----------CCC-------HHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHH
Confidence 4555667777766 666 7788886 4444444 6889999999999 99985 6677777
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh
Q 010904 127 SGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE 206 (497)
Q Consensus 127 ~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 206 (497)
.+++..++++. .+.++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+
T Consensus 91 ~~~~~~~~a~~--~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~ 168 (491)
T PRK11010 91 LLVAIAAMGFL--EPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLAD 168 (491)
T ss_pred HHHHHHHHHHc--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777764 1225788999999999999999999999999999999999999999999999999999999998886
Q ss_pred --cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhh
Q 010904 207 --FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWK 284 (497)
Q Consensus 207 --~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (497)
.|||..|++.+++.++..+. .++.||+++.... +++ .+++...++++.++
T Consensus 169 ~~~GWr~~f~i~a~l~ll~~l~-~~~~~e~~~~~~~---~~~------------------------~~~~~~~~l~~~~~ 220 (491)
T PRK11010 169 RYLGWQGMYWLMAALLIPCIIA-TLLAPEPTDTIPV---PKT------------------------LEQAVVAPLRDFFG 220 (491)
T ss_pred cccCHHHHHHHHHHHHHHHHHH-HHhcCCCcccccc---ccc------------------------hhhhHHHHHHHHHc
Confidence 49999999999887776443 3446765432100 000 00011234667888
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHh-hhhhhhhhhhhhhHHhHHhhhhhhHHHHHH
Q 010904 285 LPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILST-IFDIGGVFGGILAGLISDMIEARAVTSVAF 363 (497)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~ 363 (497)
++..|...+..++..........+.+.|+.+. +|++..+.+.+.. ...++.+++.+++|+++||+++|+.+..+.
T Consensus 221 ~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~----~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~ 296 (491)
T PRK11010 221 RNNAWLILLLIVLYKLGDAFAMSLTTTFLIRG----VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFG 296 (491)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 88888777666666666666777888888776 7999999999874 556899999999999999999988777665
Q ss_pred HHHHHHHHHHHh-hccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhh
Q 010904 364 LLLSIPALVLYR-TYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALG 442 (497)
Q Consensus 364 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 442 (497)
.+..+..+.... .....+.+......++..++.+...+...+...+.++++ ..++..|+.+....+|..++
T Consensus 297 ~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~--------~~~t~~gl~~s~~~lg~~~~ 368 (491)
T PRK11010 297 ILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKS--------FSATQFALLSALSAVGRVYV 368 (491)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------CcHHHHHHHHHHHHHHHHHH
Confidence 554443332221 111223333333344433333333444566666666653 33888999999999999999
Q ss_pred hcccceeecc-CchHHHHHHHHHHHHHHHHHHHHH
Q 010904 443 PLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 443 ~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 476 (497)
+.+.|++.|. ||+..|.+.+++.+++.+.....+
T Consensus 369 ~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 369 GPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 999999998888888877666554
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-32 Score=261.01 Aligned_cols=351 Identities=15% Similarity=0.071 Sum_probs=270.3
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHH
Q 010904 55 SIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIF 134 (497)
Q Consensus 55 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~ 134 (497)
+.+.+++.+++ |++ ..++|++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++.
T Consensus 28 ~~l~~~l~~~~----------g~s-------~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~ 90 (395)
T PRK10054 28 PFMTIYLSRQY----------SLS-------VDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI 90 (395)
T ss_pred HHHHHHHHHHc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH
Confidence 44556677888 888 9999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhhcCcceeee
Q 010904 135 GLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFV 214 (497)
Q Consensus 135 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~gwr~~f~ 214 (497)
+++ ++++.++++|++.|.+.+...+...++..|.+|+++|++++++.....++|..+||.+++.+.+.+||..|+
T Consensus 91 ~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~ 165 (395)
T PRK10054 91 PLV-----NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFW 165 (395)
T ss_pred HHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHH
Confidence 988 899999999999998888888888999999999999999999999999999999999999988889999999
Q ss_pred hhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHH
Q 010904 215 LPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFC 294 (497)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (497)
+.+++.++..++..+++||+++.++. +++ +....++.+|+|+++...+.
T Consensus 166 ~~~~~~~i~~i~~~~~~~~~~~~~~~---~~~----------------------------~~~~~~~~~~~~~~~~~~~~ 214 (395)
T PRK10054 166 LAAICSAFPLVFIQIWVQRSEKAIAT---ETG----------------------------SVWSPSVLLQDKALLWFTCS 214 (395)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccc---chh----------------------------hhhhhhhhccCceehHHHHH
Confidence 98888777655555556554322110 000 01123577889999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHH
Q 010904 295 LFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLY 374 (497)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 374 (497)
.++..........+.+.|+... .+.+.+....+.......+..+...+..+++.||.++|+.+..+..+..++...+.
T Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 292 (395)
T PRK10054 215 GFLASFVSGAFASCISQYVMVV--ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFI 292 (395)
T ss_pred HHHHHHHHHHhhhhHHHHHHHh--cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Confidence 7777777666666777777543 01456666778888888888888888899999999999988877766666655443
Q ss_pred hhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-C
Q 010904 375 RTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-G 453 (497)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g 453 (497)
.. ..+.+...+...+.+++.....+.....+.+..|++. ++++.+..+ ...+|..+||.+.|.+.|+ |
T Consensus 293 ~~--~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~--------~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g 361 (395)
T PRK10054 293 FS--GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM--------KASYFSAQS-LGWLGAAINPLVSGVILTTLP 361 (395)
T ss_pred Hc--chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc--------ceehHhHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 32 2344444556667777766555666666777777643 367777654 5678999999999999999 8
Q ss_pred chHHHHHHHHHHHHHHHH
Q 010904 454 WNSVFFMLIVSILFAGMF 471 (497)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~ 471 (497)
+...|.+.+....++.++
T Consensus 362 ~~~~~~~~~~~~~~~~~~ 379 (395)
T PRK10054 362 PWSLFVILALAIVAAWLL 379 (395)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 877777765555544443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=254.65 Aligned_cols=344 Identities=25% Similarity=0.501 Sum_probs=300.6
Q ss_pred HHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCch
Q 010904 39 ITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRL 118 (497)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~ 118 (497)
.+.+..+....+....+...|.+.+++ +.+ ..+.+++.+.+.++..+++++.|+++||+|||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~ 65 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDL----------GLS-------ASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRR 65 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHc----------CCC-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCch
Confidence 345566677777777888888888887 777 899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHH
Q 010904 119 FLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGS 198 (497)
Q Consensus 119 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~ 198 (497)
.+..+.++..++.++..++ ++++.+++.|++.|++.+...+...+++.|++|+++|++.+++......+|..++|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 140 (352)
T cd06174 66 VLLLGLLLFALGSLLLAFA-----SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGP 140 (352)
T ss_pred hhHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHhh-cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhh
Q 010904 199 VLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAI 277 (497)
Q Consensus 199 ~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (497)
.+++.+.+ .+||+.|++.+++.++..+...+. +
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------------------------------------- 174 (352)
T cd06174 141 LLGGLLAESLGWRWLFLILAILGLLLALLLLFL-L--------------------------------------------- 174 (352)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-H---------------------------------------------
Confidence 99999884 679999999888877765544332 1
Q ss_pred hHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhh
Q 010904 278 GFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARA 357 (497)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 357 (497)
|.++...+..++..........+.|.+.++. +|.+..+.+.......++.+++.++.+++.||+++|+
T Consensus 175 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 242 (352)
T cd06174 175 --------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEV----LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR 242 (352)
T ss_pred --------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456677777888888888899999999987 6999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhh
Q 010904 358 -VTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGS 436 (497)
Q Consensus 358 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 436 (497)
.+..+..+..++.+..... .+.+......++.|++.+...+.......+..|+ +++++..|+.+...+
T Consensus 243 ~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 311 (352)
T cd06174 243 LLLLIGLLLAALGLLLLALA---PSLALLLVALLLLGFGLGFAFPALLTLASELAPP--------EARGTASGLFNTFGS 311 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH--------HHHHHHHHHHHHHHH
Confidence 8888888777777666543 3456677788889999999999999999999886 445999999999999
Q ss_pred hhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHH
Q 010904 437 VGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLI 473 (497)
Q Consensus 437 ~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 473 (497)
++..++|.+.|.+.+. +++..+.+.+++.+++.+...
T Consensus 312 ~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 312 LGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 9999999999999977 999999999888887766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=255.16 Aligned_cols=380 Identities=14% Similarity=0.144 Sum_probs=281.0
Q ss_pred ccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhh
Q 010904 87 HRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCV 166 (497)
Q Consensus 87 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 166 (497)
...+.+++++.+|.++|++..|+++||+|||..+.++.++..++.+++.++ ...+++.+++++|++.|+..|......
T Consensus 60 ~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s--~~~~~~e~li~GR~i~Gl~~gl~~~~~ 137 (485)
T KOG0569|consen 60 LLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLS--KSAPSFEMLILGRLIVGLACGLSTGLV 137 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHhHHHHHHH
Confidence 346788999999999999999999999999999999999999888888876 445889999999999999999999999
Q ss_pred hhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh---hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCC-CC
Q 010904 167 VAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL---EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGF-EL 242 (497)
Q Consensus 167 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~---~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~ 242 (497)
..++.|..|++.||....+.+.+..+|.++|..++..-. +..|++.+.+..+++++. .+.+.++||+|++.-. ++
T Consensus 138 pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~-l~~l~~~PESPk~Ll~~k~ 216 (485)
T KOG0569|consen 138 PMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ-LALLPFLPESPKYLLIKKG 216 (485)
T ss_pred HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH-HHHHhcCCCCcchHHHHcC
Confidence 999999999999999999999999999999977665433 356999999999888876 6677889999999766 56
Q ss_pred Chhhhhhh-hhccCCcccc-cccc---ccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 010904 243 PGKEVELM-NVENGDKVEN-EEVG---LLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKL-----VAYTFLYWLPFY 312 (497)
Q Consensus 243 ~~~~~~~~-~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 312 (497)
++++++.. +..+..+.++ +.+. ..+.++..+++..++++++++|....-....+.... .......|...+
T Consensus 217 ~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i 296 (485)
T KOG0569|consen 217 DEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSI 296 (485)
T ss_pred CHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHH
Confidence 66666433 3333322211 1111 111122222366678999999877654333322222 233455666777
Q ss_pred HHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCch---hH---HHH
Q 010904 313 IRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSIS---MI---TNI 386 (497)
Q Consensus 313 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~ 386 (497)
+++ .|++..++-+.....++..++.++++.++.||.|||++++.+..++.+..+++.......+ .| ..+
T Consensus 297 ~~~-----aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i 371 (485)
T KOG0569|consen 297 FKT-----AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCI 371 (485)
T ss_pred HHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 777 4999999999999999999999999999999999999999988888877666543221111 11 123
Q ss_pred HHHHHHhhhccCc-chhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHHHHH
Q 010904 387 PLMFLSGLLVNGP-YSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVS 464 (497)
Q Consensus 387 ~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~ 464 (497)
.+.+++.++++.. .|..+.+.+|.+|+. .|.+++++...++.+..++-......+.+. |. ..|+.+.+.
T Consensus 372 ~~~~~~~~~f~~G~gpi~~fi~aELf~~~--------~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~ 442 (485)
T KOG0569|consen 372 AAIFLFIISFAIGPGPIPWFIGAELFPQS--------ARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIP 442 (485)
T ss_pred HHHHHHHHhhhcCCCchhHHHHHHhCCcc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHH
Confidence 3444444444433 455667777888764 448888888888888888888877777776 54 677777777
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q 010904 465 ILFAGMFLIRIVKAEIREKL 484 (497)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~ 484 (497)
+.+..+..+... +|+|+|.
T Consensus 443 ~~~~~i~~~~~l-PETkgr~ 461 (485)
T KOG0569|consen 443 LAIFLIYLYRYL-PETKGRT 461 (485)
T ss_pred HHHHHHHHHHhC-cccCCCC
Confidence 777776665554 4666554
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=264.84 Aligned_cols=361 Identities=18% Similarity=0.159 Sum_probs=261.7
Q ss_pred HHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHH-----HHHHHHHHHhhccccccccCCchh
Q 010904 45 ASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLA-----FLTSYSVGMYFAGHVGDTIDLRLF 119 (497)
Q Consensus 45 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~-----~~~~~~~~~~~~g~l~dr~Grr~~ 119 (497)
+++++|+..++...+.+.+++ ..+ .+ +.+.+.+.+. ..++..+++++.|+++||+|||++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~----------~~~---~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~ 67 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTF----------FPP---SG--DPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKT 67 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHh----------cCC---CC--ChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHH
Confidence 455667777777777777765 221 11 4455554432 333344689999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhHHH--------HHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhh
Q 010904 120 LVFGMMGSGLFTIIFGLAYWLSVHLLV--------YFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTS 191 (497)
Q Consensus 120 l~~~~~~~~i~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 191 (497)
+..+.++.+++.++++++ ++++ .+++.|+++|++.+...+....++.|++|+++|++..++...+..
T Consensus 68 l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 142 (394)
T TIGR00883 68 LVITLLMMGIGTLLIGLL-----PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAP 142 (394)
T ss_pred HHHHHHHHHHHHHHHhhC-----CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHH
Confidence 999999999999999998 6654 588999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhHh---------hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCcccccc
Q 010904 192 IGNIIGSVLASGVL---------EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEE 262 (497)
Q Consensus 192 ~G~~~g~~~~~~l~---------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (497)
+|.++++.++..+. ..+||+.|++.+++.++. .......||+++....+++
T Consensus 143 ~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------------- 202 (394)
T TIGR00883 143 VGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIG-LYLRRNLEETPVFEKAQEK------------------- 202 (394)
T ss_pred HHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHH-HHHHHhcCCChhHHHHHhc-------------------
Confidence 99999998876653 358999998877665543 3334445554432110000
Q ss_pred ccccccCCCCchhhhhHHHHhhCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhh
Q 010904 263 VGLLESGSSGSLQAIGFLEAWKLPR--VAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGV 340 (497)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~ 340 (497)
+++...+.++.+++++ ++......++.....+....+.|.|+++. +|.++.+.+.......++.+
T Consensus 203 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~ 269 (394)
T TIGR00883 203 ---------HKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQT----LGLSANSALLVLMLSLILFF 269 (394)
T ss_pred ---------cccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCChhHHHHHHHHHHHHHH
Confidence 0001223456666665 66666777777777778889999999877 79999999999999999999
Q ss_pred hhhhhhHHhHHhhhhhhHHHHHHHHHHHHH-HHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhccccccccc
Q 010904 341 FGGILAGLISDMIEARAVTSVAFLLLSIPA-LVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKG 419 (497)
Q Consensus 341 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (497)
++.++.|+++||++||+.+.....+..+.. ..+.......+.+......++.|++.+...+.......+.+|+++|
T Consensus 270 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~--- 346 (394)
T TIGR00883 270 ITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVR--- 346 (394)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccce---
Confidence 999999999999999987765554444333 2222222223445555566777887777888888899999887543
Q ss_pred ccchhHHHHHHH-hhhhhhhhhhhhcccceeecc-C-chHHHHHHHHHHH
Q 010904 420 NSRALATVTAII-DGTGSVGAALGPLLAGYISTR-G-WNSVFFMLIVSIL 466 (497)
Q Consensus 420 ~~~~~g~~~g~~-~~~~~~g~~~~~~~~g~l~~~-g-~~~~~~~~~~~~~ 466 (497)
+++.++. +....+|..++|.+.|++.|+ + ++..++...+..+
T Consensus 347 -----~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 347 -----YTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred -----eeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 7777774 444567888999999999988 5 6665555544433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=257.49 Aligned_cols=363 Identities=11% Similarity=0.071 Sum_probs=275.2
Q ss_pred HHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCC
Q 010904 37 LVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDL 116 (497)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr 116 (497)
+++++..++..++.....+++.|.+++++ |++ ..+.|++.+.+.+++.+++++.|++.||+||
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~----------~~s-------~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~ 67 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAF----------TLT-------AFQAALVQSAFYGGYFIMAIPAAIFMKKLSY 67 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHh----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34455556666666677788999999999 888 9999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHH
Q 010904 117 RLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNII 196 (497)
Q Consensus 117 r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 196 (497)
|+++.++.++++++.+++..+ ...++++.+++.|++.|+|.|...+....++.++.|+++|++.+++.+...++|..+
T Consensus 68 r~~~~~g~~l~~~g~~l~~~~--~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~ 145 (410)
T TIGR00885 68 KAGILLGLFLYALGAFLFWPA--AEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSII 145 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--HhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886543 112689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHhh---------------------------cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhh
Q 010904 197 GSVLASGVLE---------------------------FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVEL 249 (497)
Q Consensus 197 g~~~~~~l~~---------------------------~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 249 (497)
||.+++.+.. .+||++|++.+++.++..++.. +.+ .|+.+.. +++
T Consensus 146 g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~-~p~~~~~---~~~--- 217 (410)
T TIGR00885 146 GMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTK-MPALNHS---DAK--- 217 (410)
T ss_pred HHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-CCCCCcc---ccc---
Confidence 9999887741 2599999999887776544332 222 1211100 000
Q ss_pred hhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhh
Q 010904 250 MNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAG 329 (497)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g 329 (497)
+.......++++|+|+++...+..+++.....+..++++.|.++.. .+.+....+
T Consensus 218 ----------------------~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~---~~~~~~~a~ 272 (410)
T TIGR00885 218 ----------------------QISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLI---PGMTAGFAA 272 (410)
T ss_pred ----------------------cccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CCCCHHHHH
Confidence 0001113457889999998888888888888788899999997640 244444555
Q ss_pred HHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHh
Q 010904 330 ILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAA 409 (497)
Q Consensus 330 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 409 (497)
...+....+..+|+++++++.||+++|+.+.+......+..++.... .+. .....+.+.|++.+..+|.+.+...+
T Consensus 273 ~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~---~~~-~~~~~l~~~glf~s~~fp~i~sl~~~ 348 (410)
T TIGR00885 273 NYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA---GGH-VGLYCLTLCSAFMSLMFPTIYGIALK 348 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---CCh-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666678888999999999999999998877777777666655542 222 33566677888888999999999998
Q ss_pred hcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-------CchHHHHHHHHHH
Q 010904 410 DLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-------GWNSVFFMLIVSI 465 (497)
Q Consensus 410 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-------g~~~~~~~~~~~~ 465 (497)
..+++.+ ..+.++.. ..+|+++.|++.|++.|. +++..|++...+.
T Consensus 349 ~~g~~~~--------~~s~~l~~--~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~ 401 (410)
T TIGR00885 349 GLGQDTK--------YGAAGLVM--AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCF 401 (410)
T ss_pred hhhhhhh--------hhHHHHHH--HHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHH
Confidence 8876421 22333333 239999999999999994 4666666544433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=244.82 Aligned_cols=403 Identities=15% Similarity=0.091 Sum_probs=307.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCC-------------------CCCCCCCCC-------------
Q 010904 31 FHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSN-------------------LRSNDPGWA------------- 78 (497)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------------~~~~~~~~~------------- 78 (497)
+.|..++.....+.+.+.+.....-+..|....|.+++. .+....+.+
T Consensus 17 ~~r~lilviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~ 96 (464)
T KOG3764|consen 17 RSRPLILVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPA 96 (464)
T ss_pred cccceEEEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCch
Confidence 334445556666777777766666666676666655310 000000000
Q ss_pred -CCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhh
Q 010904 79 -PFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGL 157 (497)
Q Consensus 79 -~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 157 (497)
+.+.+.+++++|++++.+.+.+.+.+++.|.+.||+|+|..+++|++++..+++++++. +++++++++|.+||+
T Consensus 97 ~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-----~sy~~l~vAR~LQgv 171 (464)
T KOG3764|consen 97 EAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-----NSYPMLFVARSLQGV 171 (464)
T ss_pred hccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-----chhHHHHHHHHHhhh
Confidence 12233448899999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hhcccchhhhhhhhcccCccc-chhhHHHHHHHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhheecCC
Q 010904 158 FQSIGWPCVVAVLGNWFGKAK-RGLIMGVWNSHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFLVVRP 235 (497)
Q Consensus 158 ~~~~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p 235 (497)
|.++.+.+..++++|.||+++ |++++|+...+.++|.++||++||.+.+ .|.+.+|.+.+++.++-..+.++.++.+.
T Consensus 172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE 251 (464)
T ss_pred hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence 999999999999999999754 7999999999999999999999999996 69999999999999998777766665433
Q ss_pred cCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010904 236 EDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRH 315 (497)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (497)
...+. ..+..++++++++|.++.........+.........++.+..+
T Consensus 252 ~~~~~--------------------------------~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e 299 (464)
T KOG3764|consen 252 MDPDS--------------------------------TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLE 299 (464)
T ss_pred cCccc--------------------------------cccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHH
Confidence 22211 1122347899999999998888777777777777788888888
Q ss_pred hhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhh
Q 010904 316 TAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLL 395 (497)
Q Consensus 316 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 395 (497)
. ...+..+.|+.+....+...++..+.|.+.||+++.+++.....+..++...... ....+...+++..+..+++
T Consensus 300 ~----m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~i-P~~~~~~~L~vp~~~l~~~ 374 (464)
T KOG3764|consen 300 T----MFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPI-PFATSIAQLWVPNFGLGFG 374 (464)
T ss_pred h----ccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchh-HhhhhHHHHhhhhHHHHHH
Confidence 7 6666669999999999999999999999999999655554444444443332222 1123444555555566666
Q ss_pred ccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHH
Q 010904 396 VNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIR 474 (497)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~ 474 (497)
.+.............++..+. .+-+.+|.+.++......+|.++||.+.|.+.+. |+++.....++..++...++.+
T Consensus 375 i~~~dasl~P~l~~lvd~rh~--s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l 452 (464)
T KOG3764|consen 375 IGLADASLIPTLGYLVDPRHV--SGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL 452 (464)
T ss_pred HHHHHHHHhhhhHHhcchhhc--cccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655332 1112678999999999999999999999999998 9999988888888877776666
Q ss_pred HHh
Q 010904 475 IVK 477 (497)
Q Consensus 475 ~~~ 477 (497)
++.
T Consensus 453 l~~ 455 (464)
T KOG3764|consen 453 LRI 455 (464)
T ss_pred HHH
Confidence 543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=253.86 Aligned_cols=347 Identities=18% Similarity=0.193 Sum_probs=242.6
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHH-HHHHHHhhccccccccCCchhh-HHHHHHHHHHHHH
Q 010904 56 IVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLT-SYSVGMYFAGHVGDTIDLRLFL-VFGMMGSGLFTII 133 (497)
Q Consensus 56 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~i~~~~ 133 (497)
...+++.+|+ |++ .+++|++.+...+ ++.++.+++++ .||+||||.+ ..+.++.+++.++
T Consensus 37 ~~~~~l~~~~----------~~s-------~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~ 98 (393)
T PRK15011 37 TLSIFLTDEV----------HAR-------PAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTL 98 (393)
T ss_pred HHHHHHHhhc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHH
Confidence 3445578888 888 9999999876555 66666666666 9999999875 5566666777888
Q ss_pred HhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccc--hhhHHHHHHHhhhHHHHHHHHhhhHh-hcCcc
Q 010904 134 FGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKR--GLIMGVWNSHTSIGNIIGSVLASGVL-EFGWG 210 (497)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~l~-~~gwr 210 (497)
.+++ ++++.+++.+.+.|...+...|...+++.|+.++++| +...++.+.+.++|.++||++++.+. +.|||
T Consensus 99 ~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~ 173 (393)
T PRK15011 99 FAWN-----RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFT 173 (393)
T ss_pred HHHh-----hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChH
Confidence 8887 8898887666655545557788888888998876655 34567888999999999999999998 57999
Q ss_pred eeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhC-CchH
Q 010904 211 WSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKL-PRVA 289 (497)
Q Consensus 211 ~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 289 (497)
+.|++.++..++.+++.++++||.++.++..+. +. + ...++ +..+
T Consensus 174 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------------------~--------~~~~~~~~~~ 219 (393)
T PRK15011 174 VMYLSAAVAFIVCGVMVWLFLPSMRKELPLATG--TL------------------------E--------APRRNRRDTL 219 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccCCCCccccc--cc------------------------c--------ccccccccHH
Confidence 999999988888777777778876543211000 00 0 00011 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHH
Q 010904 290 PFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIP 369 (497)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 369 (497)
...............+..+.|.|+++. +|+++.+.+.+.....++.+++.++.|+++||+++|+.+..+.....+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~p~~l~~~----~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~ 295 (393)
T PRK15011 220 LLFVICTLMWGTNSLYIINMPLFIINE----LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCF 295 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 333333444445555667899999887 7999999998888877888889999999999999998776655444433
Q ss_pred HHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhccccee
Q 010904 370 ALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYI 449 (497)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 449 (497)
...... ..+.+......++.++..+...+.......+..|+ .+|++.++++...++|..++|.+.|.+
T Consensus 296 ~~~~~~---~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~---------~~g~~~~~~~~~~~lg~~~g~~l~G~i 363 (393)
T PRK15011 296 YAGMLM---AHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG---------QAGSATTLYTNTSRVGWIIAGSLAGIV 363 (393)
T ss_pred HHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322221 12333333344444444433334444555565553 238999999988999999999999999
Q ss_pred ecc-CchHHHHHHHHHHHHHHHHHHHH
Q 010904 450 STR-GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 450 ~~~-g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
.|. +|+..|.+.++..+++.+..+..
T Consensus 364 ~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 364 AEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 997 99999888777777766555443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-30 Score=255.76 Aligned_cols=408 Identities=20% Similarity=0.243 Sum_probs=321.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhc
Q 010904 28 TLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFA 107 (497)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~ 107 (497)
+...+.|.+++..++..+..+.....++.+.+.+.+++ +-+ ..+++|+.++....+.+..++.
T Consensus 39 PdGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f----------~~s-------~~~~~~i~sl~~~~~~~~gpl~ 101 (509)
T KOG2504|consen 39 PDGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYF----------GSS-------SSQIAWIGSLLLGVYLLAGPLV 101 (509)
T ss_pred CCCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHh----------CCC-------ccHHHHHHHHHHHHHHHhccHH
Confidence 36678899999999999998888889999999999998 666 8889999999999999999999
Q ss_pred cccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH-HHHhhhhhcccchhhhhhhhcccCcccchhhHHHH
Q 010904 108 GHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGV-QIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVW 186 (497)
Q Consensus 108 g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 186 (497)
+.+.||+|.|.+.++|.++.+++.++.+++ +++|.+++. -++.|+|.|+.+......+..||+ ++|+.+.|+.
T Consensus 102 s~l~~rfg~R~v~i~G~~v~~~g~~lssF~-----~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia 175 (509)
T KOG2504|consen 102 SALCNRFGCRTVMIAGGLVAALGLLLSSFA-----TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIA 175 (509)
T ss_pred HHHHhhcCchHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhh
Confidence 999999999999999999999999999999 999877555 667899999999999999999985 7999999999
Q ss_pred HHHhhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhh------------hhc
Q 010904 187 NSHTSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELM------------NVE 253 (497)
Q Consensus 187 ~~~~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~------------~~~ 253 (497)
.++.++|..+-|.+...+. .+|||+.+++.+.+.+-..+......|..++.... ..++.+.. ...
T Consensus 176 ~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 253 (509)
T KOG2504|consen 176 VSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDLRNSAASVESTPKPVELRI 253 (509)
T ss_pred hccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhhcccccccccccccccccc
Confidence 9999999999888888877 68999999999998877766666655534333221 00000000 000
Q ss_pred -cCCcccc-----ccccccccCCCC---chhhhh---HHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010904 254 -NGDKVEN-----EEVGLLESGSSG---SLQAIG---FLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGV 321 (497)
Q Consensus 254 -~~~~~~~-----~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (497)
.+..... +.....+.+.+. ..+... .++++++|.++.+.+...+....+.....++|.|..+ +
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-----~ 328 (509)
T KOG2504|consen 254 SERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS-----L 328 (509)
T ss_pred ccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----c
Confidence 0000000 000000111111 111122 3689999999999999999999999999999999997 6
Q ss_pred CCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHH--HHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCc
Q 010904 322 HLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVT--SVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGP 399 (497)
Q Consensus 322 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 399 (497)
|++..++..+.++.++..++++++.|+++|+...++.. .++.+..++..+...+ ..+.+.++....++|++.+..
T Consensus 329 g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~---~~~~~~l~~~~~~fG~~~g~~ 405 (509)
T KOG2504|consen 329 GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF---ATTYVGLIVFSILFGFCVGSF 405 (509)
T ss_pred CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998744333 3344444444433333 356778888888999999888
Q ss_pred chhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc--CchHHHHHHHHHHHHHHHHHHHHH
Q 010904 400 YSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 476 (497)
.......+.+.++.+ ....+.|+...+..++..+||++.|++.|. +|...|+..++..+++..+.+...
T Consensus 406 ~~l~~~i~~~~~g~~--------~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 406 SSLTPVILVDLVGLE--------KLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHHHcChh--------hcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 877777888888864 348899999999999999999999999998 599999999999999887776655
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.3e-31 Score=251.82 Aligned_cols=329 Identities=14% Similarity=0.171 Sum_probs=255.3
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHH
Q 010904 51 RKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLF 130 (497)
Q Consensus 51 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~ 130 (497)
...+++.+|.+.+|+ |++ .++.|++.+.+.+++.+++++.|++.||+|||+++.++.++..++
T Consensus 16 ~~~~~~~lp~l~~~~----------~~s-------~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 78 (355)
T TIGR00896 16 LTSVGPLLPQIRSAL----------GMS-------FSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAG 78 (355)
T ss_pred cccCcccHHHHHHHh----------CCC-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHH
Confidence 356778899999999 888 999999999999999999999999999999999999999998888
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh-c--
Q 010904 131 TIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE-F-- 207 (497)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~-- 207 (497)
.+.+ .+ ++.+.+++.|++.|++.+...+....++.|++| ++|+++++++..+.++|..+++.+++.+.+ .
T Consensus 79 ~~~~-~~-----~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~ 151 (355)
T TIGR00896 79 ILIR-SA-----PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGG 151 (355)
T ss_pred HHHH-Hh-----ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 8777 65 889999999999999999888888889999996 689999999999999999999999888874 2
Q ss_pred CcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCc
Q 010904 208 GWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPR 287 (497)
Q Consensus 208 gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (497)
+||+.|.+.+++.++. ...++|+.+++... +++ ......++.+|+|.
T Consensus 152 ~w~~~f~~~~~~~~~~---~~~~~~~~~~~~~~---~~~---------------------------~~~~~~~~~~~~~~ 198 (355)
T TIGR00896 152 HWQQALAWWALPALLA---LLAWIPQVRRRVAA---NQT---------------------------TTRLTPVRIWRSPL 198 (355)
T ss_pred hHHHHHHHHHHHHHHH---HHHHhhhhccccCC---CCC---------------------------CCCCCCchhhcCHh
Confidence 3999988776654432 22234443221110 000 00112456788888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhh-hhhHHHHHHHHH
Q 010904 288 VAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIE-ARAVTSVAFLLL 366 (497)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~-~~~~~~~~~~~~ 366 (497)
+|...+..++....++....|+|.|+++ +|+++.+.+...+...++.++++++.|++.||++ +|+.+..+..+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~-----~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~ 273 (355)
T TIGR00896 199 AWQVTVFFGLQSGLYYSLIGWLPAILIS-----HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQ 273 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Confidence 8887777777777788888999999987 5899999999999999999999999999999994 555555665656
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhccc
Q 010904 367 SIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLA 446 (497)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 446 (497)
.++.+.+... .... .. ....+.|++.+..++.......+..++ ++.+++..++.+...+++..++|.+.
T Consensus 274 ~~~~~~~~~~-~~~~--~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~gp~~~ 342 (355)
T TIGR00896 274 LVGLCGLLFA-PMHG--LW-AWALVLGLGQGGAFPLALTLIGLRSRQ-------AAQAAALSAMAQSIGYLLAALGPLFV 342 (355)
T ss_pred HHHHHHHHHh-hhhH--HH-HHHHHHHHhhhhHhHHHHHHHHHhccC-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444432 1111 11 234567888877777766665554443 24458889999999999999999999
Q ss_pred ceeecc
Q 010904 447 GYISTR 452 (497)
Q Consensus 447 g~l~~~ 452 (497)
|++.|+
T Consensus 343 G~l~~~ 348 (355)
T TIGR00896 343 GVLHDI 348 (355)
T ss_pred HHHHHH
Confidence 999887
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=248.51 Aligned_cols=356 Identities=15% Similarity=0.065 Sum_probs=272.2
Q ss_pred HHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhh-
Q 010904 42 FAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFL- 120 (497)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l- 120 (497)
+.++..+.......+.+|.+.+|+ |++ ..++|++.+.+.+...++++++|+++||+|||...
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~----------g~s-------~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~ 73 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGI----------GLG-------EEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIAL 73 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 344444444445566678888888 888 99999999999999999999999999999985433
Q ss_pred ---HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHH
Q 010904 121 ---VFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIG 197 (497)
Q Consensus 121 ---~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g 197 (497)
..+..+..+ ..+..+ ++++.+++.|+++|.+.+...|...++..++ +++|+++.|......++|.+++
T Consensus 74 ~~~~~~~~l~~~--~~~~~~-----~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g 144 (382)
T TIGR00902 74 RLLALASAIFAA--AFSAGA-----HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIG 144 (382)
T ss_pred HHHHHHHHHHHH--HHHHhh-----hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHH
Confidence 222222222 233355 8899999999999999988889988887665 4789999999999999999999
Q ss_pred HHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhh
Q 010904 198 SVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQA 276 (497)
Q Consensus 198 ~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (497)
|++++.+.+ +|||..|++.++...+ .+.. +.++|+++..+..+ ++ +.+..
T Consensus 145 ~~l~g~l~~~~g~~~~f~~~~~~~~~-~~~~-~~~~~~~~~~~~~~--~~-------------------------~~~~~ 195 (382)
T TIGR00902 145 SALFGGLIGMFDEQNILAILTAGLAF-MLIG-FLIKPTIPPKDAIP--ED-------------------------ESQGD 195 (382)
T ss_pred HHHHHHHHHHcChhHHHHHHHHHHHH-HHHH-HHcCCCCCCCcccc--cc-------------------------ccccc
Confidence 999999885 7999999887655332 2323 33343321111000 00 00112
Q ss_pred hhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhh
Q 010904 277 IGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEAR 356 (497)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 356 (497)
...++++|+|++|...+..++..........+.|.|+++ .|.++.+.|.+.....++.+++..+.+++.||++.|
T Consensus 196 ~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-----~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~ 270 (382)
T TIGR00902 196 SAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-----AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR 270 (382)
T ss_pred hhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH
Confidence 236789999999999998888888888899999999987 599999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhh-hh
Q 010904 357 AVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDG-TG 435 (497)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~ 435 (497)
+.+.++.....+....... .++.+..+...++-|+..+...+....++.+. |+ +++++..++++. ..
T Consensus 271 ~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~--------~~~~~~q~~~~~~~~ 338 (382)
T TIGR00902 271 DLLLISAIACVGRWAIIGA---IEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG--------SEIAKLQALYNALAM 338 (382)
T ss_pred HHHHHHHHHHHHHHHHHHh---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH--------hhHHHHHHHHHHHHH
Confidence 9998888888877766554 25566677778888988888888888887765 54 334888998874 56
Q ss_pred hhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHH
Q 010904 436 SVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGM 470 (497)
Q Consensus 436 ~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~ 470 (497)
.+|..++|.+.|++.|+ |+ ..|...+++.+++.+
T Consensus 339 g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 339 GGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 79999999999999998 75 667777776665543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-30 Score=250.70 Aligned_cols=370 Identities=15% Similarity=0.093 Sum_probs=248.6
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHH
Q 010904 54 PSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTII 133 (497)
Q Consensus 54 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~ 133 (497)
.+....++.+++ |++ ..+.|++.+.+.++..++++++|+++||+|||++++++..+.+++...
T Consensus 30 ~~~~~~~l~~~~----------g~s-------~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~ 92 (420)
T PRK09528 30 FSFFPIWLHDIN----------GLS-------GTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGP 92 (420)
T ss_pred HHHHHHHHHHhc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 445555667778 888 999999999999999999999999999999999998877666554432
Q ss_pred Hhh---hhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhhcCcc
Q 010904 134 FGL---AYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWG 210 (497)
Q Consensus 134 ~~~---~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~gwr 210 (497)
... +...........++.+++.|.+.....+....+..+ . .+++++.++......++|..++|++++.+.+.+|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~ 170 (420)
T PRK09528 93 FFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQ 170 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCch
Confidence 211 100000111122333444444333333333333322 2 35677888999999999999999999999888999
Q ss_pred eeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHH
Q 010904 211 WSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAP 290 (497)
Q Consensus 211 ~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (497)
++|++.+++.++..++.++..+|+++.... .++++. +++.......++.+|+|.+|.
T Consensus 171 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------------------~~~~~~~~~~~~~l~~~~~~~ 227 (420)
T PRK09528 171 INFWLGSGSALILLVLLFFAKPDAPSTAKV-ANALGA----------------------NASAVSLKDALALLKLPKFWF 227 (420)
T ss_pred HhHHHHHHHHHHHHHHHhcccccccchhhh-ccchhc----------------------ccccccHHHHHHHccCCCeEe
Confidence 999998888777655554444443321110 000000 001112234567888998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHH
Q 010904 291 FAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPA 370 (497)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 370 (497)
..+...+..........+.|.|+.+...+ .+.+..+.+.+.+...++.+++.++.|+++||+++|+.+..+.++.++..
T Consensus 228 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~ 306 (420)
T PRK09528 228 LVLYVIGVACFYDVFDQQFPNFFASFFAT-PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRI 306 (420)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Confidence 66655555555555556778887765211 25666778899998999999999999999999999999888877777766
Q ss_pred HHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHH-Hhhhhhhhhhhhhccccee
Q 010904 371 LVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAI-IDGTGSVGAALGPLLAGYI 449 (497)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~~~~~~g~l 449 (497)
++..+. .+.+..+...++.|+..+...+....+..+.+|++ .+++..+. .+....+|.+++|.+.|++
T Consensus 307 ~l~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--------~~a~~~~~~~~~~~~lg~~ig~~~~G~l 375 (420)
T PRK09528 307 IGSGFA---TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVR--------LSATIYLVGFQFAKQLGAVFLSTLAGNL 375 (420)
T ss_pred HHHHhc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc--------ceeeeeeehHHHHHHHHHHHHHHHHHHH
Confidence 555442 34455555566666665555555556666777653 33666554 5677889999999999999
Q ss_pred ecc-CchHHHHHHHHHHHHHHHHHHHHHh
Q 010904 450 STR-GWNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 450 ~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
.|. ||+..|...+++.++..++.....+
T Consensus 376 ~~~~G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 376 YDSIGFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 998 9999999988887776665554433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-29 Score=222.19 Aligned_cols=369 Identities=17% Similarity=0.224 Sum_probs=294.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccc
Q 010904 34 ITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDT 113 (497)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr 113 (497)
+..+..+.+..+---.....++++++++.+|+ |+| .+..|.+++...+...+.+++..+++.|
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~----------gls-------~s~aGlLTtLPll~fg~~ap~a~~Lar~ 73 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDL----------GLS-------FSVAGLLTTLPLLAFGLFAPAAPRLARR 73 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHh----------ccc-------HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34333333333333334556788999999999 888 9999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhH
Q 010904 114 IDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIG 193 (497)
Q Consensus 114 ~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 193 (497)
+|.++.+..++++.+++.++-.. .+.+.++.+-.+.|.|.+...+..++++.+.|| |+-+..+|+|....++|
T Consensus 74 ~g~er~l~~~Llli~~G~~iR~~------~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~ 146 (395)
T COG2807 74 FGEERSLFLALLLIAAGILIRSL------GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAG 146 (395)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHH
Confidence 99999999999999999998887 678889999999999999999999999999997 68999999999999999
Q ss_pred HHHHHHHhhhHhh-c-CcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCC
Q 010904 194 NIIGSVLASGVLE-F-GWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSS 271 (497)
Q Consensus 194 ~~~g~~~~~~l~~-~-gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (497)
..+++.+.-.+.+ . |||......+.++++..+.+ +|...+.... .
T Consensus 147 aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~W---lPq~~r~~~~--~---------------------------- 193 (395)
T COG2807 147 AALAAALAVPLAQHSGGWRGALGFWALLALLALLIW---LPQALREQAA--S---------------------------- 193 (395)
T ss_pred HHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHH---hhhccccccc--c----------------------------
Confidence 9999999988884 3 69999999999988864433 2322111100 0
Q ss_pred CchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHH
Q 010904 272 GSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISD 351 (497)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d 351 (497)
.+....+-.+++|+|.-|.+.+.+.+.+..+|....|+|.++.| .|+|..++|.+.+...+.+++.++....+.+
T Consensus 194 ~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-----~G~sa~~aG~llsl~~l~~~~~~ll~P~la~ 268 (395)
T COG2807 194 IATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID-----RGLSAAEAGSLLSLMQLAQLPTALLIPLLAR 268 (395)
T ss_pred cccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH-----cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00011122468999999999999999999999999999999999 5999999999999999999999999999999
Q ss_pred hhhhhhHHHH-HHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHH
Q 010904 352 MIEARAVTSV-AFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAI 430 (497)
Q Consensus 352 r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 430 (497)
|...++.+.+ ...++.++.+.+.+ .+.+..+.+ .++.|++.++.++.....+.....+ ++..+...|+
T Consensus 269 R~~n~r~~~~~~~~~~l~G~~G~~~-~P~~~~~lw---~~llG~G~G~~F~laL~li~~rs~~-------a~~Aa~LSgm 337 (395)
T COG2807 269 RSKNQRPLVVLALLLMLVGLVGLLL-APGQLPILW---ALLLGLGQGGAFPLALTLILLRSSD-------AAIAAALSGM 337 (395)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHH-hhhhHHHHH---HHHHhCccchHHHHHHHHHHhhcCC-------hHHHHHHHHH
Confidence 8755555444 44444444444433 333333333 4788999999999988888777655 4666889999
Q ss_pred Hhhhhhhhhhhhhcccceeecc--CchHHHHHHHHHHHHHHHHHHHH
Q 010904 431 IDGTGSVGAALGPLLAGYISTR--GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 431 ~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
.+.++++-.++||.+.|++.|. +|+..+.......++..+.-+..
T Consensus 338 aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 338 AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998 88888887777766655554443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=279.37 Aligned_cols=342 Identities=13% Similarity=0.061 Sum_probs=259.2
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHH---HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhccc
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVF---GMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIG 162 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~---~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 162 (497)
....++..+++.+++.++++++|+++||+|||+++.. +.++..+..+..... +++++++++|+++|++.+..
T Consensus 51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~l~~~~~l~gi~~a~~ 125 (1140)
T PRK06814 51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL-----NSVPLLFAALFLMGIHSALF 125 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHhh
Confidence 3457888999999999999999999999999997533 222233323333333 89999999999999999999
Q ss_pred chhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCC
Q 010904 163 WPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFE 241 (497)
Q Consensus 163 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 241 (497)
.|+..+++.|++|+++|++++|+.+++.++|.++||++++++. ..+|++.|+..++ ..+.+++..+.+|+.++.....
T Consensus 126 ~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 204 (1140)
T PRK06814 126 GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMG-IAVLGWLASLFIPKTGNAAPDL 204 (1140)
T ss_pred chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH-HHHHHHHHHhhCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999998 5789999944444 3444455556666544321110
Q ss_pred CChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010904 242 LPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGV 321 (497)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (497)
+.... ........++.+.++|.+|...+..++.++....+..++|.|+++. +
T Consensus 205 ~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~ 256 (1140)
T PRK06814 205 KIDRN------------------------IIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET----L 256 (1140)
T ss_pred eeccc------------------------hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----c
Confidence 00000 0011223577888999999998888888888888889999999998 8
Q ss_pred CCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhh-----------------ccCchhHH
Q 010904 322 HLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRT-----------------YGSISMIT 384 (497)
Q Consensus 322 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 384 (497)
|.++...|++.+...++.+++.++.|+++|+..+++.+..+.++.++..+.+.+. ....+.+.
T Consensus 257 g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1140)
T PRK06814 257 GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWR 336 (1140)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHH
Confidence 9999999999999999999999999999988877666555555444444333221 11134556
Q ss_pred HHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc--CchHHHHHHH
Q 010904 385 NIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFMLI 462 (497)
Q Consensus 385 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~ 462 (497)
..+..+++|++.+...+...+.+.+.+|++. +|+++|+.+++.+++..+++.+.|.+.+. ++...+.+.+
T Consensus 337 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~--------~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~ 408 (1140)
T PRK06814 337 ILIDLFGLAAAGGLYIVPLFAALQAWANPAH--------RARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIA 408 (1140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCCccc--------ceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 6677778898888888888999999988754 49999999999999999999999998754 6666665555
Q ss_pred HHHHHHH
Q 010904 463 VSILFAG 469 (497)
Q Consensus 463 ~~~~~~~ 469 (497)
++.++..
T Consensus 409 ~~~~~~~ 415 (1140)
T PRK06814 409 LANLIVA 415 (1140)
T ss_pred HHHHHHH
Confidence 5444433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-29 Score=242.40 Aligned_cols=365 Identities=13% Similarity=0.106 Sum_probs=257.3
Q ss_pred HHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccccc-----CCch
Q 010904 44 YASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTI-----DLRL 118 (497)
Q Consensus 44 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~ 118 (497)
++..+.........+|...++. |++ .+++|++...... .+.++++|+++||+ ||||
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~----------g~~-------~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr 68 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTVE----------GLD-------IQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRR 68 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHHc----------CCC-------HHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcch
Confidence 3334433334455667777776 888 9999999766665 58999999999999 8876
Q ss_pred -hhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHH
Q 010904 119 -FLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIG 197 (497)
Q Consensus 119 -~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g 197 (497)
.+..+.++.+++..+.++. ...++++.+++..++.+++.+...++..+++.|++|+++|+++.++...+.++|.+++
T Consensus 69 ~~l~~~~~~~~l~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g 146 (402)
T PRK11902 69 GWLLLTQVGLAASIAAMAFC--PPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVS 146 (402)
T ss_pred hHHHHHHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHH
Confidence 7888888888888877765 1124678888888888988899999999999999999999999999999999999999
Q ss_pred HHHhhhHhh--cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchh
Q 010904 198 SVLASGVLE--FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQ 275 (497)
Q Consensus 198 ~~~~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (497)
+.+++.+.+ .|||..|++.+++.++..+ ..+++||+++....+ ++. +++.
T Consensus 147 ~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l-~~~~~~e~~~~~~~~---~~~------------------------~~~~ 198 (402)
T PRK11902 147 GGLALWLADRVLGWGNTYLLMAGLMLAGAL-TTLWAPEPEVPARPP---RSL------------------------GEAV 198 (402)
T ss_pred hHHHHHHHhcccCHHHHHHHHHHHHHHHHH-HHHhcCCCccccccc---chh------------------------HHHH
Confidence 999988885 4999999999887766543 445566643321100 000 0012
Q ss_pred hhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhh-hhhhhhhhhhHHhHHhhh
Q 010904 276 AIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFD-IGGVFGGILAGLISDMIE 354 (497)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~~ 354 (497)
...+++++|+|.++...+..++..........+.+.++.+. +|+++.+.+++....+ ++.+++.++++++.||++
T Consensus 199 ~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~----~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g 274 (402)
T PRK11902 199 VGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRG----AGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLG 274 (402)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHh----cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577899999998877776666655444444555666665 7999999999886654 468899999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh-ccCchhHHHHHHHH----HHhhhccCcchhHHHHHHhhcccccccccccchhHHHHH
Q 010904 355 ARAVTSVAFLLLSIPALVLYRT-YGSISMITNIPLMF----LSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTA 429 (497)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 429 (497)
+|+.+..+..+..+..+.+... ....+.+....... +.|+..+.........+.+.+| ++..+
T Consensus 275 ~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------------~~~~~ 342 (402)
T PRK11902 275 LYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS------------ATQYA 342 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc------------HHHHH
Confidence 9988766665555444333211 11223343343332 3344444444444444444443 33455
Q ss_pred HHhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHH
Q 010904 430 IIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLI 473 (497)
Q Consensus 430 ~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 473 (497)
+.+....++..+++.+.|.+.|. ||+..|.+.+++.+++.++..
T Consensus 343 ~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 343 LLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 56666677777677789999998 999999998888877765543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=226.90 Aligned_cols=365 Identities=15% Similarity=0.175 Sum_probs=292.1
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccC
Q 010904 36 ALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTID 115 (497)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G 115 (497)
.++++...++..++......++.|.+++.| +++ ..|.+.+..+++.+|.+.+++.|++.+|+|
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f----------~ls-------~~~a~liqfaff~gYf~~~lpa~~~~kk~g 76 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKEVF----------DLT-------YFEASLIQFAFFGGYFIMSLPAGLLIKKLG 76 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHh----------Ccc-------HHHHHHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 344455555666666677889999999999 888 999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHH
Q 010904 116 LRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNI 195 (497)
Q Consensus 116 rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 195 (497)
+|+-+++|+.++++++.++.=+ ....++..++++-++.|.|.+...++++.+++...++++..+.+.+.+..+++|.+
T Consensus 77 yk~gi~lgL~l~avg~~lF~pA--a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~ 154 (422)
T COG0738 77 YKAGIVLGLLLYAVGAALFWPA--ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAI 154 (422)
T ss_pred hHHHHHHHHHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHH
Confidence 9999999999999999998522 22388999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHhh--------------------cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccC
Q 010904 196 IGSVLASGVLE--------------------FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENG 255 (497)
Q Consensus 196 ~g~~~~~~l~~--------------------~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 255 (497)
+||++++.+.. ..||++|...+...+++.+.... .| .|+.+...+++
T Consensus 155 ~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~-~k-~p~~~~~~~~~----------- 221 (422)
T COG0738 155 LGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILL-SK-LPDLQVAAPSL----------- 221 (422)
T ss_pred HHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh-cc-CCcCCcccccc-----------
Confidence 99999987763 13888888888776665443322 22 12221111110
Q ss_pred CccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhh
Q 010904 256 DKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIF 335 (497)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~ 335 (497)
.+++.....+++++|+++...++.+++-........|++.|+.+. .|.+..++....+.+
T Consensus 222 ----------------~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~----~g~~~~~aa~~~s~~ 281 (422)
T COG0738 222 ----------------GASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL----LGLNEQQAAYYLSFF 281 (422)
T ss_pred ----------------cccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc----CCccHHHHHHHHHHH
Confidence 011111467999999999999999999999999999999999997 699999999999999
Q ss_pred hhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhccccc
Q 010904 336 DIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQD 415 (497)
Q Consensus 336 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 415 (497)
..+.++|++++.++..|+...|.+........+.++...+. .+ ...+..+++.|++.+..+|.+.+...+.++.+.
T Consensus 282 ~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~---~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~t 357 (422)
T COG0738 282 WVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI---GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHT 357 (422)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh---cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccc
Confidence 99999999999999999998888877766655555555543 22 455667778999999999999999999998542
Q ss_pred ccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHH
Q 010904 416 LIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSIL 466 (497)
Q Consensus 416 ~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~ 466 (497)
...|..-.+..+|+++-|.+.|++.|. +-...+......+.
T Consensus 358 ----------s~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~ 399 (422)
T COG0738 358 ----------SVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCY 399 (422)
T ss_pred ----------cccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 334445566789999999999999998 66655553333333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=247.71 Aligned_cols=348 Identities=18% Similarity=0.244 Sum_probs=279.4
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
+..++++.++..+...+.++++|.++||++||++++.+.++.++..+..++....+..+.|.+++.-++.|++.+...|+
T Consensus 44 ~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA 123 (524)
T PF05977_consen 44 PLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPA 123 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999998887776666543444568899999999999999999999
Q ss_pred hhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCCh
Q 010904 166 VVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPG 244 (497)
Q Consensus 166 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 244 (497)
.++++.|.+|+++...++++.+...++..++||.++|.+. ..|-.+.|.+.++..++. +......+..++.... .+
T Consensus 124 ~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~-i~~l~~~~~~~~~~~~--~~ 200 (524)
T PF05977_consen 124 WQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLIS-ILALLRWKPPPPPSSL--PR 200 (524)
T ss_pred HHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcccccccccc--ch
Confidence 9999999999999999999999999999999999999988 478888999988766654 3333333322211110 00
Q ss_pred hhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 010904 245 KEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLS 324 (497)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s 324 (497)
+. ....-+..++.+.++|.+....+..++.+.........+|.+.++. +|.+
T Consensus 201 e~------------------------~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~----l~~~ 252 (524)
T PF05977_consen 201 ER------------------------FFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV----LGGG 252 (524)
T ss_pred hh------------------------hhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH----hCCc
Confidence 00 0111233456666778777666666666666666677889999988 8999
Q ss_pred cchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHH
Q 010904 325 HKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLIT 404 (497)
Q Consensus 325 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 404 (497)
+...|++.+..++|.++|.++.+++.+|+++++.+..+.+..+++.+.+.+ ..+.+...+.+++.|++.........
T Consensus 253 a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal---~~~~~~~~~~l~l~G~~~~~~~~~~~ 329 (524)
T PF05977_consen 253 ASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLAL---SPSFWLALIALFLAGAAWIIANSSLN 329 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888887777776666554 35667777788888998888888888
Q ss_pred HHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHH
Q 010904 405 TAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
+..++.+|++ .+|++++++.+....+..+|..+.|.+.+. |.+.++.+.++..+++.++....
T Consensus 330 t~~Q~~~P~~--------~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 330 TLVQLSVPDW--------VRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred HHHHHhCCHH--------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888874 459999999999999999999999999998 88888887777666665555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=243.19 Aligned_cols=355 Identities=12% Similarity=0.048 Sum_probs=260.4
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCC-chhhHHHHHHHHHHHH
Q 010904 54 PSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDL-RLFLVFGMMGSGLFTI 132 (497)
Q Consensus 54 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~ 132 (497)
++++.+.+.+++ |++ ..|+|++.+++.++..++++++|+++||+|| |+++.++.++.+++..
T Consensus 22 ~~~l~~~l~~~~----------g~s-------~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 22 LVTLGSYMSKTL----------HFS-------GAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHhc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 366777788887 888 9999999999999999999999999999965 7788888888888888
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhh--------cccCcccchhhHHHHHHHhhhHHHHHHHHhhhH
Q 010904 133 IFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLG--------NWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGV 204 (497)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 204 (497)
+..+. ++++.+++.|++.|++.+...+...++.. |......|.+..| .+|.++||.+++.+
T Consensus 85 ~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l 153 (418)
T TIGR00889 85 FAAQV-----TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLL 153 (418)
T ss_pred HHHHh-----cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHh
Confidence 88887 89999999999999988877776665532 2222234555555 36888888888877
Q ss_pred hh-cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHh
Q 010904 205 LE-FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAW 283 (497)
Q Consensus 205 ~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (497)
.. ..|+ +|++.+++.++..+ ..+.+||+|+....++.+ . ++..+...++++
T Consensus 154 ~~~~~~~-~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~-~-------------------------~~~~~~~~~~~~ 205 (418)
T TIGR00889 154 DIELSNI-QLYITAGSSALLGV-FALTLPDIPVAKSTAKMS-I-------------------------KVMLGLDAFILF 205 (418)
T ss_pred cccchhH-HHHHHHHHHHHHHH-HHhcCCCCCCCccccccC-H-------------------------HHHhhhhHHHHh
Confidence 42 2344 45666666665544 455677765321110000 0 001112345788
Q ss_pred hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCc--------chhhHHHhhhhhhhhhhhhhhHHhHHhhhh
Q 010904 284 KLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSH--------KTAGILSTIFDIGGVFGGILAGLISDMIEA 355 (497)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--------~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~ 355 (497)
|+|+++...+..++..........+.+.|+++. |.++ ...+...+...+..+++.++.++++||+++
T Consensus 206 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~ 280 (418)
T TIGR00889 206 KNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEF-----GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGI 280 (418)
T ss_pred cCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHh-----cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999998888887777666666677888888874 5443 566888999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCc-hhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHh-h
Q 010904 356 RAVTSVAFLLLSIPALVLYRTYGSI-SMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIID-G 433 (497)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~ 433 (497)
|+.+..+.++..+...++....... +.+..++..++.|++.+...+.....+.+.+|+ +.++++.|+.+ .
T Consensus 281 r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~--------~~~g~~~g~~~~~ 352 (418)
T TIGR00889 281 KKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV--------HIRASAQGLFTLM 352 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH--------HHHHHHHHHHHHH
Confidence 9999888887777655554321111 233445566777777777667777788888886 44599999997 5
Q ss_pred hhhhhhhhhhcccceeecc-------CchHHHHHHHHHHHHHHHHHHHHHh
Q 010904 434 TGSVGAALGPLLAGYISTR-------GWNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 434 ~~~~g~~~~~~~~g~l~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
...+|..++|.+.|++.|+ ||+..|.+.+++.+++.++..++.+
T Consensus 353 ~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 353 CNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6789999999999999886 3888898888888877776666654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=229.88 Aligned_cols=401 Identities=13% Similarity=0.090 Sum_probs=277.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCcc-chhhHHHHHHHHHHHHhhccc
Q 010904 31 FHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHR-LGELDLAFLTSYSVGMYFAGH 109 (497)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~s~~~~~~~~~~~~~g~ 109 (497)
..++..+.+|.++++... +.+.+.+.|++.+|+ |++ +.| .|.+.+++..+|++++++.|+
T Consensus 24 ~W~~~~~~lC~fGF~~e~--R~n~s~a~p~L~~el----------glT-------~~qv~G~I~s~F~ysYal~qIp~Gl 84 (511)
T TIGR00806 24 SWRVLVLYLCFYGFMAQF--RPGESFITPYLLTVL----------NFT-------EETVTNEIIPVLPYSHLAVLVPVFL 84 (511)
T ss_pred chhHHHHHHHHHHHHHHh--hchHHHHHHHHHHHc----------CCC-------HHHhcchHHHHHHHHHHHHHHHHHH
Confidence 344555556666666654 888999999999999 998 999 999999999999999999999
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHH
Q 010904 110 VGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSH 189 (497)
Q Consensus 110 l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 189 (497)
++||+|.|+++.++.+.+++.+++.+++ ++++.+.+.|++.|++.|+.+ +...++..|+|+++|+++.++..++
T Consensus 85 LaDrlG~K~vL~l~~l~Wsl~t~L~~fa-----~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg 158 (511)
T TIGR00806 85 LTDYLRYKPVLVLQALSFVCVWLLLLLG-----TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAA 158 (511)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 999999999999999999999 9999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhHhhcCcceeeehh--hHHHHHHHHHHHhheecCCcCCCCCCChhhh-hhhhhccCCcccccccccc
Q 010904 190 TSIGNIIGSVLASGVLEFGWGWSFVLP--GFLVIFVGVFVFLFLVVRPEDLGFELPGKEV-ELMNVENGDKVENEEVGLL 266 (497)
Q Consensus 190 ~~~G~~~g~~~~~~l~~~gwr~~f~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 266 (497)
..+|.++++++++.+..+|||+-+.+. .+.+.++++++.+++|..++..-.++++... ....+....+.+.. .+..
T Consensus 159 ~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~-~~~~ 237 (511)
T TIGR00806 159 VLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPG-GKLE 237 (511)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCc-cccc
Confidence 999999999999996688999865543 3344455566777888544432211111000 00000000000000 0000
Q ss_pred ccCC-C----CchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhh
Q 010904 267 ESGS-S----GSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVF 341 (497)
Q Consensus 267 ~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~ 341 (497)
+..+ . ...-...+++..+||.+..-.+-+.+....++.+..|.-..-+++ .+-.+...|.+-++..+.+.+
T Consensus 238 ~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v----~~~~~~yNG~veA~~tllga~ 313 (511)
T TIGR00806 238 DYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTL----DESLNKYNGAVDAASTLLGAI 313 (511)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHc----CCCccccCCHHHHHHHHHHHH
Confidence 0000 0 011233455667888887777777777667766666666555554 232223677888888888888
Q ss_pred hhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhccccccccccc
Q 010904 342 GGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNS 421 (497)
Q Consensus 342 ~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (497)
..+..|++-.++.+...+.++.+...-+.+++.. ....+.|..++..++++..+....+.....+++....
T Consensus 314 ~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m-~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~-------- 384 (511)
T TIGR00806 314 TSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWM-SQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSK-------- 384 (511)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhh-hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------
Confidence 9999999866664433343333333333333222 3356888889999998888888888877777777664
Q ss_pred chhHHHHHHHhhhhhhhhhhhhccc----ceeecc-----CchHHHHHHHHHHHHHHH
Q 010904 422 RALATVTAIIDGTGSVGAALGPLLA----GYISTR-----GWNSVFFMLIVSILFAGM 470 (497)
Q Consensus 422 ~~~g~~~g~~~~~~~~g~~~~~~~~----g~l~~~-----g~~~~~~~~~~~~~~~~~ 470 (497)
+..|...|+++++..+-+.+-..+. |.-.+. -|..-|.+++++.++..+
T Consensus 385 ~~~aLvFGiNtfvAl~LQtilT~iVvd~~gl~l~i~~Qf~vY~~yf~~~~~i~~~~~~ 442 (511)
T TIGR00806 385 ELCALVFGINTFVATALKTIITAVVSDKRGLGLQVRKQFRIYSVYFLVLSIICFFGAG 442 (511)
T ss_pred cceEEEEecHHHHHHHHHHheEEEEEcccccCCCceeEEEehhhHHHHHHHHHHHHHH
Confidence 3448888888887776666655443 121111 244455555555555444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-29 Score=273.29 Aligned_cols=344 Identities=17% Similarity=0.106 Sum_probs=260.1
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
....+++.+++.+++.++++++|+++||+|||++++++.++..+..++..++ ...++++.++++|+++|++.+...++
T Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~r~l~G~~~~~~~~~ 123 (1146)
T PRK08633 46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLA--YYLGWFWLAFAVTFLLGAQSAIYSPA 123 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHH--HHHccHHHHHHHHHHHHHHHHhhchH
Confidence 4567999999999999999999999999999999999987766666554443 11267999999999999999999999
Q ss_pred hhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhhc----------CcceeeehhhHHHHHHHHHHHhheecCC
Q 010904 166 VVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEF----------GWGWSFVLPGFLVIFVGVFVFLFLVVRP 235 (497)
Q Consensus 166 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~----------gwr~~f~~~~~~~~~~~~~~~~~~~~~p 235 (497)
..+++.|++|+++|++++++...+.++|.++|+++++++... +|++.+.+.++...+..++..+.+||.+
T Consensus 124 ~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1146)
T PRK08633 124 KYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVP 203 (1146)
T ss_pred HHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 999999999999999999999999999999999999998743 3444444444444444444555567665
Q ss_pred cCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010904 236 EDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRH 315 (497)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (497)
+......+.+. ..........++.++++|.++...+..++..........++|.|+.+
T Consensus 204 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (1146)
T PRK08633 204 AAAPEVFDKKK----------------------YLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKE 261 (1146)
T ss_pred CCCcccccccc----------------------cccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 43221100000 00011123346778888988888777777777777788899999998
Q ss_pred hhhcccCCCcc-hhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhh
Q 010904 316 TAVAGVHLSHK-TAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGL 394 (497)
Q Consensus 316 ~~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 394 (497)
. +|++.. ..+++.+...++.+++.++.++++||+++++.+.++.++.+++.+++... .+.+..++..++.|+
T Consensus 262 ~----~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~ 334 (1146)
T PRK08633 262 V----LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA---PSLASVLVLFFLFGF 334 (1146)
T ss_pred H----hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHH
Confidence 8 899998 99999999999999999999999999999888877777666665555442 355566677788888
Q ss_pred hccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc--CchHHHHHHHHHHHHH
Q 010904 395 LVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFMLIVSILFA 468 (497)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~~~~~~~ 468 (497)
+.+...+...+.+.+..|++ .+|+++|+.+.+.+++..+++.+.+.+... ++...+.+.+.+.++.
T Consensus 335 ~~~~~~~~~~~~~~~~~p~~--------~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 402 (1146)
T PRK08633 335 SAGLFIVPLNALIQFRAPEK--------ELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIG 402 (1146)
T ss_pred HHHHhhHHHHHHHhhcCCcc--------chhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 88888888888888888764 449999999999999988877776655433 4444555554444433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=239.64 Aligned_cols=354 Identities=14% Similarity=0.112 Sum_probs=248.4
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHh---hhhhhhhhHHHHHHHHH
Q 010904 76 GWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFG---LAYWLSVHLLVYFVGVQ 152 (497)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~~~~~~l~~~r 152 (497)
|++ ..+.|++.+.+.++..+++++.|+++||+|||+.++.+....+++..... +......+.+..+++.|
T Consensus 34 g~s-------~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (396)
T TIGR00882 34 GLS-------KTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGG 106 (396)
T ss_pred CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 777 99999999999999999999999999999999999888777665443322 11000012344567788
Q ss_pred HHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhhcCcceeeehhhHHHHHHHHHHHhhee
Q 010904 153 IFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLV 232 (497)
Q Consensus 153 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~ 232 (497)
++.|++.+...+....+..|.. +++++..+......++|.++||.+++.+.+.+||++|++.+++.++..++.+...|
T Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 184 (396)
T TIGR00882 107 LYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKP 184 (396)
T ss_pred HHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999888888887777753 34456778888888999999999999888889999999998888877655544444
Q ss_pred cCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010904 233 VRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFY 312 (497)
Q Consensus 233 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (497)
|+|+++.. . +. .+ .++.+++..+.++.+|+|.++...+..++..........+.+.|
T Consensus 185 ~~~~~~~~-~---~~------~~-------------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y 241 (396)
T TIGR00882 185 KAPSSATV-A---NA------LG-------------ANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANF 241 (396)
T ss_pred CCchhhhh-h---cc------cc-------------cccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43321100 0 00 00 00011123356889999999887776666665666666778888
Q ss_pred HHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 010904 313 IRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLS 392 (497)
Q Consensus 313 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (497)
+++...+ .+.+....|.+.+...+..+++.+..+++.||+++|+.+.++..+.++...+... ..+.+..+...++.
T Consensus 242 ~~~~~~~-~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~---~~~~~~~~~~~~l~ 317 (396)
T TIGR00882 242 FTSFFAT-PQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF---ATTALEVVILKMLH 317 (396)
T ss_pred HHHhccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHH
Confidence 8875110 1455667788888888899999999999999999999988887777775554433 23445555555566
Q ss_pred hhhccCcchhHHHHHHhhcccccccccccchhHHHHHH-Hhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHH
Q 010904 393 GLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAI-IDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGM 470 (497)
Q Consensus 393 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~ 470 (497)
|++.............+..++ |.+++..+. .+....+|+.++|.+.|++.|. ||+.+|.+.+++.++..+
T Consensus 318 g~~~~~~~~~~~~~~~~~~~~--------~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 318 AFEVPFLLVGCFKYITSQFDV--------RLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHHHHHHHHHHHHHhCCc--------ceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 655433222222233333332 333555554 5678899999999999999998 999999998888877665
Q ss_pred HHH
Q 010904 471 FLI 473 (497)
Q Consensus 471 ~~~ 473 (497)
...
T Consensus 390 ~~~ 392 (396)
T TIGR00882 390 ISV 392 (396)
T ss_pred HHH
Confidence 543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=237.65 Aligned_cols=342 Identities=17% Similarity=0.080 Sum_probs=251.9
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCc----hhhHHHHHHHHH
Q 010904 54 PSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLR----LFLVFGMMGSGL 129 (497)
Q Consensus 54 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~l~~~~~~~~i 129 (497)
..+.+|.+.+|+ +++ ..++|++.+++.++..++++++|++.||+||| +.+.+...+.
T Consensus 23 ~~p~l~~~l~~~----------g~s-------~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~-- 83 (382)
T PRK11128 23 FLPFWSVWLKGQ----------GYT-------PETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF-- 83 (382)
T ss_pred HhhhHHHHHHhc----------CCC-------HHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--
Confidence 455566777888 888 99999999999999999999999999999994 3333222222
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh-cC
Q 010904 130 FTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE-FG 208 (497)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~g 208 (497)
.......+ +++|.+++.|++.|++.+...|...+++.++ +++|+++++......++|..+||++++.+.+ +|
T Consensus 84 ~~~~~~~~-----~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g 156 (382)
T PRK11128 84 AVAFWFGA-----HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG 156 (382)
T ss_pred HHHHHHhc-----ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 12223333 7899999999999999999999888888877 3578889999999999999999999999985 79
Q ss_pred cceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCch
Q 010904 209 WGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRV 288 (497)
Q Consensus 209 wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (497)
||..|++.++..++. ++..+..||.+++.. +++ ..++...++++++|+|.+
T Consensus 157 ~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~------------------------~~~~~~~~~~~i~~~~~~ 207 (382)
T PRK11128 157 EQAILWILTAGVASM-LLGQLLRPTIMPQGE----SRQ------------------------QESAGWPAWKALLKEPTV 207 (382)
T ss_pred hhHHHHHHHHHHHHH-HHHHHccCCCCCccc----ccc------------------------ccccccchHHHHHcChhH
Confidence 999998877654443 333333343211100 000 000012347889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHH
Q 010904 289 APFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSI 368 (497)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 368 (497)
|...+..++..........+.|.|+++ .|.++.+.|.+.+...++.++..++.+++.||+++|+.+..+....++
T Consensus 208 ~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 208 WRFLLCVSLLQGSHAAYYGFSAIYWQA-----AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVV 282 (382)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHH-----CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 998888887777777788888999976 599999999999998999999999999999999999998887777776
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhh-hhhhhhhhhhcccc
Q 010904 369 PALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDG-TGSVGAALGPLLAG 447 (497)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~~~~~~~g 447 (497)
..+.... .++.+..++..++.|++.+...+....+..+. ++ .+.++..++.+. ...+|..++|.+.|
T Consensus 283 ~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~g~~ig~~i~G 350 (382)
T PRK11128 283 RWGLMGS---TTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PG--------SEVIRLQALYSALAMGGSIAIMTVLSG 350 (382)
T ss_pred HHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CH--------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554433 24556666677777887776666666655554 32 223778888764 44677799999999
Q ss_pred eeecc-CchHHHHHHHHHHHHH
Q 010904 448 YISTR-GWNSVFFMLIVSILFA 468 (497)
Q Consensus 448 ~l~~~-g~~~~~~~~~~~~~~~ 468 (497)
.+.|. ++ ..++..+++.+++
T Consensus 351 ~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 351 FLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HHHHhccH-HHHHHHHHHHHHH
Confidence 99998 65 4555555555443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-31 Score=239.29 Aligned_cols=435 Identities=17% Similarity=0.147 Sum_probs=306.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhc
Q 010904 28 TLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFA 107 (497)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~ 107 (497)
...+++...+.++.++++.+.+|..+++.+.|.+...+-+.+.+. .+.+ ....+.+..+-.+|..+||++.
T Consensus 34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~--g~~p-------s~i~~~Vn~~A~vGti~GQl~F 104 (538)
T KOG0252|consen 34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESG--GHYP-------SGVLALVNAAALVGTIFGQLFF 104 (538)
T ss_pred chhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCC--CcCC-------chHHHHHHHHHHHHHHHHHHHH
Confidence 346778888899999999999999999999888877652111111 2233 6677889999999999999999
Q ss_pred cccccccCCchhhHHHHHHHHHHHHHHhhhhhhhh--hHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHH
Q 010904 108 GHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSV--HLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGV 185 (497)
Q Consensus 108 g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 185 (497)
|+++||+|||+++...++++.+++++++++..... .-.+++...|++.|+|.|+-+|...+..+|....++||...+.
T Consensus 105 G~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaa 184 (538)
T KOG0252|consen 105 GWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAA 184 (538)
T ss_pred HHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEE
Confidence 99999999999999999999999998888632222 3467899999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHhhhHhh----------------cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhh
Q 010904 186 WNSHTSIGNIIGSVLASGVLE----------------FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVEL 249 (497)
Q Consensus 186 ~~~~~~~G~~~g~~~~~~l~~----------------~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 249 (497)
.-+..++|.+.|.+++..+.. .=||..|.+.+++.+++ ....+.+||+++......++.+...
T Consensus 185 vFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~-ly~Rl~M~Et~~Y~al~~~~~~~a~ 263 (538)
T KOG0252|consen 185 VFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLV-LYFRLKMPETARYTALVSKKLKQAA 263 (538)
T ss_pred EEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHH-HHhhhcCCcchhHHHHhhcCHhhhh
Confidence 988888888888777766541 12999999988887765 5566778888776532221111100
Q ss_pred hhhccCCccc-cccccccccC-CCCchhhhhHHHHh---hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 010904 250 MNVENGDKVE-NEEVGLLESG-SSGSLQAIGFLEAW---KLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLS 324 (497)
Q Consensus 250 ~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s 324 (497)
.+..+.... -+.++..+.+ +..++....+...+ .-++....+..+|+.-.+++....+....+++. |+.
T Consensus 264 -~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~i-----g~~ 337 (538)
T KOG0252|consen 264 -GDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAI-----GVI 337 (538)
T ss_pred -hccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhh-----ccC
Confidence 000000000 0000000001 11111111122222 234556677888888899999999999998874 665
Q ss_pred cchhhH--------HH-hhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhcc-CchhHHHHHHHHHHhh
Q 010904 325 HKTAGI--------LS-TIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYG-SISMITNIPLMFLSGL 394 (497)
Q Consensus 325 ~~~~g~--------~~-~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~ 394 (497)
+.+.-. .. .+...+.++|..+...++|++||++..+.++.++++..+.+..... ..+.....++..+..+
T Consensus 338 ~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~f 417 (538)
T KOG0252|consen 338 PSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFF 417 (538)
T ss_pred CCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHH
Confidence 544333 22 2233444557778888999999999999999999998888776544 2222222333222222
Q ss_pred -hccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeec-----c-CchHHHHHHHHHHHH
Q 010904 395 -LVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYIST-----R-GWNSVFFMLIVSILF 467 (497)
Q Consensus 395 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-----~-g~~~~~~~~~~~~~~ 467 (497)
+..+.........+|.+|. |.||++.|+....+..|++++...+.++.+ . +...++++++++..+
T Consensus 418 f~NFGPn~ttfivpaE~FPa--------rvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~ 489 (538)
T KOG0252|consen 418 FGNFGPNATTFIVPAEIFPA--------RVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLL 489 (538)
T ss_pred HHhcCCCceeEEeehhhchH--------HHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHH
Confidence 2233344444555677775 667999999999999999999999999998 4 889999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhcCC
Q 010904 468 AGMFLIRIVKAEIREKLNEGK 488 (497)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~ 488 (497)
+.+..+++. |+++++.++.
T Consensus 490 gi~~T~l~p--Etk~~~leei 508 (538)
T KOG0252|consen 490 GILFTLLIP--ETKGKSLEEI 508 (538)
T ss_pred hHheeEEee--cccccCHHHh
Confidence 888776664 6666555443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=243.13 Aligned_cols=346 Identities=16% Similarity=0.153 Sum_probs=259.4
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccc----cCCch-hhHHHHHHHHHHH
Q 010904 57 VKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDT----IDLRL-FLVFGMMGSGLFT 131 (497)
Q Consensus 57 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~i~~ 131 (497)
+.+.+.+++ |++ +.++|++.++..+..++..++.|+++|| +|||| .++.+....+++.
T Consensus 22 l~~~~~~~~----------g~s-------~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~ 84 (437)
T TIGR00792 22 LLFFYTDVL----------GLS-------AAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVL 84 (437)
T ss_pred HHHHHHHcc----------CCC-------HHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHH
Confidence 456667777 888 9999999999999999999999999997 67754 6778888888888
Q ss_pred HHHhhhhhhh-hhHHHHHHHHHHHhhhhhcccchhhhhhhhccc-CcccchhhHHHHHHHhhhHHHHHHHHhhhHh----
Q 010904 132 IIFGLAYWLS-VHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWF-GKAKRGLIMGVWNSHTSIGNIIGSVLASGVL---- 205 (497)
Q Consensus 132 ~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~---- 205 (497)
+++.+.+... ....+.+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~ 164 (437)
T TIGR00792 85 VLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFG 164 (437)
T ss_pred HHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8777652110 123667788899999998888888888999988 4689999999999998998887766655443
Q ss_pred ----hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHH
Q 010904 206 ----EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLE 281 (497)
Q Consensus 206 ----~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (497)
..+||+.+.+.++++++..++.++..||+++.... +++ ++.+....+++
T Consensus 165 ~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~---~~~------------------------~~~~~~~~~~~ 217 (437)
T TIGR00792 165 GGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPK---NIE------------------------KKLSLKQIFKA 217 (437)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCc---ccc------------------------cCCCHHHHHHH
Confidence 24799999999998888777767777775422110 000 01112345678
Q ss_pred HhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHH
Q 010904 282 AWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSV 361 (497)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~ 361 (497)
++++|.++...+..++..........+.+.|.+.. .+ ++...+.+.....++.+++.++.++++||+++|+.+..
T Consensus 218 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~ 292 (437)
T TIGR00792 218 LFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYV----LG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAG 292 (437)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeee----cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 88999999888887777777766666666666654 44 45566777777889999999999999999999999888
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhh
Q 010904 362 AFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAAL 441 (497)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 441 (497)
+..+..++.+.+.+. ..+.+...+..++.|++.+...+...+..++.++.+ +.+..+|..|++.|+.+....+|..+
T Consensus 293 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~~~g~~l 369 (437)
T TIGR00792 293 GILLMVLGYLIFFFA--GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYG-EWKTGVRAEGLVYSVRTFVRKLGQAL 369 (437)
T ss_pred HHHHHHHHHHHHHHc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhcCccchHHHHHHHHHHHHHHHHH
Confidence 877777666555432 134445556667778888777777777777776543 23333466699999999999999999
Q ss_pred hhcccceeecc-Cc
Q 010904 442 GPLLAGYISTR-GW 454 (497)
Q Consensus 442 ~~~~~g~l~~~-g~ 454 (497)
++.+.|++.+. ||
T Consensus 370 g~~i~g~ll~~~G~ 383 (437)
T TIGR00792 370 AGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999998876 54
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-29 Score=219.23 Aligned_cols=419 Identities=16% Similarity=0.165 Sum_probs=301.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhh
Q 010904 27 KTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYF 106 (497)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~ 106 (497)
..+.+++|.+......+++.+.+.....+.+.|.+...- +.+ ..|..++......|..+++..
T Consensus 70 igfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w----------~~s-------~~q~~llt~~v~~gmllga~~ 132 (528)
T KOG0253|consen 70 IGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVW----------GPS-------EGQAPLLTLSVFLGMLVGAMV 132 (528)
T ss_pred cCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh----------chh-------hhhhhHHHHHHHhhhhhhhhh
Confidence 346788999999999999999888888888888887765 555 889999999999999999999
Q ss_pred ccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHH
Q 010904 107 AGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVW 186 (497)
Q Consensus 107 ~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 186 (497)
+|..+|++|||+.+........+...+.+.+ +|+.++++.|.+.|+|.|+ .|...++-.|..|..+|...+-..
T Consensus 133 w~l~~d~~grr~~f~~T~l~t~v~~~is~~s-----pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~ 206 (528)
T KOG0253|consen 133 WGLSADTIGRRKGFNLTFLVTGVFGVISGAS-----PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS 206 (528)
T ss_pred hheehhhhhcchhhhhhHHHHHHHHHhhcCC-----CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH
Confidence 9999999999999999999999999999999 9999999999999999999 899899999999999999887777
Q ss_pred HHHhhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhh----hhhhccCCcc---
Q 010904 187 NSHTSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVE----LMNVENGDKV--- 258 (497)
Q Consensus 187 ~~~~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----~~~~~~~~~~--- 258 (497)
..+.+|.++...++..+. ++||||.....+.+..+. ....+++||+|+..-.+.+++++. .+.+.+...-
T Consensus 207 -~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~-a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplg 284 (528)
T KOG0253|consen 207 -FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFA-ARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLG 284 (528)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHH-HHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcc
Confidence 999999999988887766 689999988888766665 556678999999887777766652 2222222110
Q ss_pred ----------ccccccccccCC-CCchhhhhHHHHhh---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--c---
Q 010904 259 ----------ENEEVGLLESGS-SGSLQAIGFLEAWK---LPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAV--A--- 319 (497)
Q Consensus 259 ----------~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--- 319 (497)
++++.++.+... ..+.......+++. ++....+...++...+.+++.........+.... .
T Consensus 285 vl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r 364 (528)
T KOG0253|consen 285 VLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNR 364 (528)
T ss_pred eeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchh
Confidence 001111100000 01111222333332 1223334444455555555554444333332100 0
Q ss_pred ----------ccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHH
Q 010904 320 ----------GVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLM 389 (497)
Q Consensus 320 ----------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (497)
+-..+...--.-..+..+....|.++.+++.||+|||+.+....+++++..+++... .+.....+..
T Consensus 365 ~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c---~~rn~~tvll 441 (528)
T KOG0253|consen 365 FLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC---KTRNAYTVLL 441 (528)
T ss_pred cchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh---cCcchhHHHH
Confidence 001111222234556678889999999999999999999999999998887776653 2222334455
Q ss_pred HHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeeccCchHHHHHHHHHHHHHH
Q 010904 390 FLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAG 469 (497)
Q Consensus 390 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~g~~~~~~~~~~~~~~~~ 469 (497)
+..-++..+.+...+.+.+|.+|+..| +++.|....+..+|+++.|.+. ...+.+...+..+.+.+++++.
T Consensus 442 f~arafisg~fqvaYvYtPEVyPTavR--------atgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilag 512 (528)
T KOG0253|consen 442 FTARAFISGAFQVAYVYTPEVYPTAVR--------ATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAG 512 (528)
T ss_pred HHHHHHHhchheEEEEecCcccchhhh--------hcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHH
Confidence 566777788888889999999998544 9999999999999999999997 3333355566677777777777
Q ss_pred HHHHHHHhhhhhhh
Q 010904 470 MFLIRIVKAEIREK 483 (497)
Q Consensus 470 ~~~~~~~~~~~~~~ 483 (497)
+...++. -|+|.|
T Consensus 513 IavcffP-iEtkGR 525 (528)
T KOG0253|consen 513 IAVCFFP-IETKGR 525 (528)
T ss_pred HHheeee-eccCCC
Confidence 7666654 355544
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-28 Score=231.14 Aligned_cols=322 Identities=12% Similarity=0.105 Sum_probs=244.4
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccccc-----CCchh-hHHHHHHH
Q 010904 54 PSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTI-----DLRLF-LVFGMMGS 127 (497)
Q Consensus 54 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~ 127 (497)
.++..|.+.+|+ |++ .+++|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.
T Consensus 7 ~~~~~~~~~~~~----------g~s-------~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~ 67 (356)
T TIGR00901 7 VGNTLPYWLRSK----------NVS-------LKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLL 67 (356)
T ss_pred HHhHHHHHHHHc----------CCC-------HHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHH
Confidence 455778888888 888 9999999655 555555 89999999998 89996 56777778
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh-h
Q 010904 128 GLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-E 206 (497)
Q Consensus 128 ~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~ 206 (497)
++..++.++. .+..+.+.+....++.+++.+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+. .
T Consensus 68 ~~~~~~l~~~--~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~ 145 (356)
T TIGR00901 68 LSLLLILSFL--VPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP 145 (356)
T ss_pred HHHHHHHHcC--CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7777777665 123467778888888899889899999999999999999999999999999999999999998887 5
Q ss_pred cC--------cceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhh
Q 010904 207 FG--------WGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIG 278 (497)
Q Consensus 207 ~g--------wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (497)
.+ ||..|++.+++.++..+..++..||+++.... + ++. +.+....
T Consensus 146 ~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~-~--~~~------------------------~~~~~~~ 198 (356)
T TIGR00901 146 EFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASV-P--KPL------------------------TQAVLKP 198 (356)
T ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCccccc-c--hhH------------------------HHHHHHH
Confidence 66 99999999887777544444445653221110 0 000 0012234
Q ss_pred HHHHhhCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhh-hhhhhhhhhhHHhHHhhh
Q 010904 279 FLEAWKLPR---VAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFD-IGGVFGGILAGLISDMIE 354 (497)
Q Consensus 279 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~~ 354 (497)
+++++++|. ++...+..++.....+....+.|.|+++ +|+++.+.+.+....+ ++.+++.++++++.||++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g 273 (356)
T TIGR00901 199 IREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-----MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLN 273 (356)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 667778776 6666677777777788888999999988 5999999998887665 577899999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhc-cC-------chhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHH
Q 010904 355 ARAVTSVAFLLLSIPALVLYRTY-GS-------ISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALAT 426 (497)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 426 (497)
+|+.+..+.++.++...+..+.. .. .+.+......++.+++.+..++...+...+.+|++.| |+
T Consensus 274 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~--------g~ 345 (356)
T TIGR00901 274 ILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFG--------AT 345 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCcc--------HH
Confidence 99988877777766555443321 11 2345555666677888888899999999999998554 99
Q ss_pred HHHHHhhhhh
Q 010904 427 VTAIIDGTGS 436 (497)
Q Consensus 427 ~~g~~~~~~~ 436 (497)
.+|+.+...+
T Consensus 346 ~~g~~~~~~~ 355 (356)
T TIGR00901 346 QMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHh
Confidence 9998877654
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=242.48 Aligned_cols=380 Identities=18% Similarity=0.125 Sum_probs=259.1
Q ss_pred ccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhh
Q 010904 87 HRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCV 166 (497)
Q Consensus 87 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 166 (497)
.+.+|+.+.+.++..++++++|+++|++|||+.++++.+++.++.++++++ +|+++++++|+++|+|.|......
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-----~~~~~l~~GR~l~G~g~G~~~~~~ 163 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-----PSWYQLIVGRILTGLGVGGASVLA 163 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhccchhhhhhcc
Confidence 456999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh--cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCCh
Q 010904 167 VAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE--FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPG 244 (497)
Q Consensus 167 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 244 (497)
+.+++|..|++.||...+..+....+|..++..++....+ .+||..+.+..+.+++..+. .+++||+|++...+.+.
T Consensus 164 piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~ 242 (513)
T KOG0254|consen 164 PVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRL 242 (513)
T ss_pred hhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCCh
Confidence 9999999999999999999999999999999777666654 38999999999999988777 88999999997776666
Q ss_pred hhhhhhh-hccC---Ccccccccccc-cc--CCCCchhhhhHHHHhhCCch-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 010904 245 KEVELMN-VENG---DKVENEEVGLL-ES--GSSGSLQAIGFLEAWKLPRV-----APFAFCLFFSKLVAYTFLYWLPFY 312 (497)
Q Consensus 245 ~~~~~~~-~~~~---~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 312 (497)
++++... .... ++.+.+.+... +. +......+..++++++ |.. +...+..+...........|.+.+
T Consensus 243 ~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i 321 (513)
T KOG0254|consen 243 EEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTI 321 (513)
T ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHH
Confidence 5554222 2222 11111111111 00 0000011112333333 322 223333333333444556778888
Q ss_pred HHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccC---------chhH
Q 010904 313 IRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGS---------ISMI 383 (497)
Q Consensus 313 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 383 (497)
++.. |.+... .......++..+++..++.++.||+|||+.++.+...+.++.+++...... ...+
T Consensus 322 f~~~-----g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (513)
T KOG0254|consen 322 FKSA-----GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGW 395 (513)
T ss_pred HHhc-----CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhH
Confidence 8775 665443 455566677777888888999999999999999998888887766542211 1112
Q ss_pred HHHHHHHHHhhhcc-CcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHH
Q 010904 384 TNIPLMFLSGLLVN-GPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFML 461 (497)
Q Consensus 384 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~ 461 (497)
..+....+.-.... +..+.......|.+|. +.++++.++....+.+...+-........+. +....|..+
T Consensus 396 ~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~--------~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f 467 (513)
T KOG0254|consen 396 LAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL--------RLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYF 467 (513)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhccCcH--------hHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 22222222222223 3333333466777775 4558888888877777666554444333333 335566666
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcC
Q 010904 462 IVSILFAGMFLIRIVKAEIREKLNEG 487 (497)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (497)
..++.+.......+.-+|++.+..++
T Consensus 468 ~~~~~~~~~~fv~~~~pETkg~slee 493 (513)
T KOG0254|consen 468 GGICLLSLIIFVFFFVPETKGLTLEE 493 (513)
T ss_pred HHHHHHHHHHHheEEcccCCCCcHHH
Confidence 66666665533333345666665543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-28 Score=244.46 Aligned_cols=304 Identities=14% Similarity=0.187 Sum_probs=230.9
Q ss_pred HHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCc
Q 010904 38 VITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLR 117 (497)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr 117 (497)
+.+++.++.........+..++.+.++| +++ ..+.|++.+.+.++++++.++.++++||+|||
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F----------~ls-------s~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~ 98 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRF----------KLS-------TSSSGLINGSYEIGNLLLIIFVSYFGTKLHRP 98 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhh----------CCC-------CCcceeeeehhhHHHHHHHHHHHHhhcccCcc
Confidence 4445566777777778888999999999 888 99999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhh----------------------------------------------hhHHHHHHHH
Q 010904 118 LFLVFGMMGSGLFTIIFGLAYWLS----------------------------------------------VHLLVYFVGV 151 (497)
Q Consensus 118 ~~l~~~~~~~~i~~~~~~~~~~~~----------------------------------------------~~~~~~l~~~ 151 (497)
+++.++.++++++++++++..+.. ...+..++++
T Consensus 99 ~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (633)
T TIGR00805 99 IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVS 178 (633)
T ss_pred eEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHH
Confidence 999999999999999998861000 0035678899
Q ss_pred HHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhhc-----------------------C
Q 010904 152 QIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEF-----------------------G 208 (497)
Q Consensus 152 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-----------------------g 208 (497)
|+++|+|.+..++...+++.|++|+++|+++++++..+..+|.++|+++++.+.+. +
T Consensus 179 r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGa 258 (633)
T TIGR00805 179 QLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGA 258 (633)
T ss_pred HHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999988731 2
Q ss_pred cceeeehhhHHHHHHHHHHHhheecC-CcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCc
Q 010904 209 WGWSFVLPGFLVIFVGVFVFLFLVVR-PEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPR 287 (497)
Q Consensus 209 wr~~f~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (497)
||..|++.+++.++.+++. +++|++ |+.....+.+.+.+ ....+.+.+.+ . +......+.+..++++++||.
T Consensus 259 Wwl~Fli~g~l~~l~~v~l-~~~p~~lp~~~~~~~~~~~~~--~~~~~~~~~~~-~---~~~~~~~~~~~~~~~Ll~n~~ 331 (633)
T TIGR00805 259 WWIGFLICGGVALLTSIPF-FFFPKALPKEGKRVNVDVHET--EKLEKSEDKSR-K---KNSDITKDFPKIIKRLLCNPI 331 (633)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCccccCCcccccchhhhhh--hcccccccccc-h---hhhhhHHHHHHHHHHHHcCcH
Confidence 6777888888888876654 445543 32211111000000 00000000000 0 000011123456788999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhh-hhhhhhhhhHHhHHhhhh--hhHHHHHHH
Q 010904 288 VAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDI-GGVFGGILAGLISDMIEA--RAVTSVAFL 364 (497)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~--~~~~~~~~~ 364 (497)
++...+..++.....+++.+|+|.|+++. +|+++.+++++.....+ +.+++.+++|+++||++. |+.+..+..
T Consensus 332 f~~~~l~~~~~~~~~~~~~~~lP~yl~~~----~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~ 407 (633)
T TIGR00805 332 YMLVILAQVIDSLAFNGYITFLPKYLENQ----YGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAIC 407 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHH
Confidence 99999999999999999999999999998 89999999999887776 568899999999999873 455544444
Q ss_pred HHHHH
Q 010904 365 LLSIP 369 (497)
Q Consensus 365 ~~~~~ 369 (497)
+..+.
T Consensus 408 ~~~~~ 412 (633)
T TIGR00805 408 LSTLS 412 (633)
T ss_pred HHHHH
Confidence 44444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=228.90 Aligned_cols=391 Identities=14% Similarity=0.064 Sum_probs=256.2
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccc-cCCchhhHHHHHHHHHHHHH
Q 010904 55 SIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDT-IDLRLFLVFGMMGSGLFTII 133 (497)
Q Consensus 55 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~ 133 (497)
+.+..++.+++ |++ ..+.+++.+.+.....+..+++|+++|| +||||+++++.++++++++.
T Consensus 35 ~~l~~yl~~~l----------g~~-------~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~ 97 (489)
T PRK10207 35 GILAVFFVKQL----------GFS-------QEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFM 97 (489)
T ss_pred HHHHHHHHHHc----------CCC-------HHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 44566777888 887 8889999999998888889999999999 99999999999999999999
Q ss_pred HhhhhhhhhhHHH-HHHHHHHHhhhhhcccchhhhhhhhcccCcc--cchhhHHHHHHHhhhHHHHHHHHhhhHh-hcCc
Q 010904 134 FGLAYWLSVHLLV-YFVGVQIFCGLFQSIGWPCVVAVLGNWFGKA--KRGLIMGVWNSHTSIGNIIGSVLASGVL-EFGW 209 (497)
Q Consensus 134 ~~~~~~~~~~~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~gw 209 (497)
++++ .+.. .++++|+++|+|.|...|...+++.|++|++ +|++++++++.+.++|..+||.+++++. +.||
T Consensus 98 ~~~~-----~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw 172 (489)
T PRK10207 98 TGMS-----LLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGY 172 (489)
T ss_pred HHHh-----ccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence 9987 5534 4558999999999999999999999999876 4578999999999999999999999998 5899
Q ss_pred ceeeehhhHHHHHHHHHHHhheecCCcCCCCCCCh--hhhhhh-----------hhccCCcccccccccc-cc-----CC
Q 010904 210 GWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPG--KEVELM-----------NVENGDKVENEEVGLL-ES-----GS 270 (497)
Q Consensus 210 r~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~-----------~~~~~~~~~~~~~~~~-~~-----~~ 270 (497)
|+.|++.++ +++..++.+...++..++...++++ .+.... ................ .. ..
T Consensus 173 ~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 251 (489)
T PRK10207 173 SVTYNLCGA-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTI 251 (489)
T ss_pred HHHHHHHHH-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 999998654 4444455555555332221101100 000000 0000000000000000 00 00
Q ss_pred CCchhhhhHHHHhhCCchHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhc-ccCCCcchhhHHHhhhhhhhhhhhhhhH
Q 010904 271 SGSLQAIGFLEAWKLPRVAPFAFC--LFFSKLVAYTFLYWLPFYIRHTAVA-GVHLSHKTAGILSTIFDIGGVFGGILAG 347 (497)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g 347 (497)
.-........+.+|+|.+....+. ..+....+....+.++.+.++...+ ..|+.. ....+.....+..++..++.+
T Consensus 252 ~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~~n~~~iii~~pl~~ 330 (489)
T PRK10207 252 IFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQALNPFWVVVASPILA 330 (489)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHhHhHHHHHHHHHHHH
Confidence 000000000134555554433322 3334444555557788888753100 011111 223344445566767788889
Q ss_pred HhHHhhhhhh-------HHHHHHHHHHHHHHHHH-----hhc--cCchhHHHHHHHHHHhhhccCcchhHHHHHHhhccc
Q 010904 348 LISDMIEARA-------VTSVAFLLLSIPALVLY-----RTY--GSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGT 413 (497)
Q Consensus 348 ~l~dr~~~~~-------~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 413 (497)
++.||+++|+ .+.++.++.+++.+.+. ... ...+.++.+...++.|++.....++....+.+..|+
T Consensus 331 ~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~ 410 (489)
T PRK10207 331 GIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQ 410 (489)
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChH
Confidence 9999999886 36666666666654321 111 123566777888899999999999999999999986
Q ss_pred ccccccccchhHHHHHHHhhhhhhhhhhhhcccceeec----------c-CchHHHHHHHHHHHHHHHHHHHHHh
Q 010904 414 QDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYIST----------R-GWNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 414 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~----------~-g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
+..|.++|+.+....+|+.++..+...... . .+...|...++..+++.++.+...+
T Consensus 411 --------~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~ 477 (489)
T PRK10207 411 --------HLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP 477 (489)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455999999999999999998877644321 1 3567777777777766666655443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=223.00 Aligned_cols=373 Identities=14% Similarity=0.020 Sum_probs=263.2
Q ss_pred HHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhh--HHHHHHHHHHHHhhc-cccccc
Q 010904 37 LVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGEL--DLAFLTSYSVGMYFA-GHVGDT 113 (497)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~s~~~~~~~~~~~~~-g~l~dr 113 (497)
+..++..++.++.......+..|.+.+|. |.+ .+++|.+ .+...+...+.++++ ++..||
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~----------g~~-------~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~ 65 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRED----------GAP-------LTALAFLPLVGLPWVVKFLWAPLVDNWWSWR 65 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 34455566777766666677888888887 888 9999997 466677787888888 557999
Q ss_pred cCCchhhHHHHHHH-HHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhh
Q 010904 114 IDLRLFLVFGMMGS-GLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSI 192 (497)
Q Consensus 114 ~Grr~~l~~~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 192 (497)
+||||..++.+.+. ++.....+... .......+++..-++.++..+...+...++..|..++++++...+....+..+
T Consensus 66 ~g~r~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~l 144 (390)
T TIGR02718 66 LGRRRSWVLPMQCLVSACLASLALVG-PDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMI 144 (390)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHH
Confidence 99999876655332 22222222110 00122334455556667777888888888999999888889999999999999
Q ss_pred HHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCC
Q 010904 193 GNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSS 271 (497)
Q Consensus 193 G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (497)
|.++|+...+++. +.|||..|++.+++.++..+..++..|+++++.+ . +
T Consensus 145 G~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~----~-~------------------------- 194 (390)
T TIGR02718 145 GFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPE----A-P------------------------- 194 (390)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccc----c-c-------------------------
Confidence 9999998888877 5799999999998887765555444333221100 0 0
Q ss_pred CchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhh-hhhhhhhhhHHhH
Q 010904 272 GSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDI-GGVFGGILAGLIS 350 (497)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~ 350 (497)
++...+.++.+|+|.++......++..........+.+.|++| .|+++++.|.+.....+ ..+++.++.|++.
T Consensus 195 -~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-----~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~ 268 (390)
T TIGR02718 195 -LARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-----AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLV 268 (390)
T ss_pred -hhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-----cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 0012246788999999888888888877777888889999988 59999999999887764 6667789999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhc---cCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHH
Q 010904 351 DMIEARAVTSVAFLLLSIPALVLYRTY---GSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATV 427 (497)
Q Consensus 351 dr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 427 (497)
||+++|+.+..+..+..+..+...... ...+.........+.++..+...+...+...+..++ ++.+|+.
T Consensus 269 ~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~~g~~ 341 (390)
T TIGR02718 269 RRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGD-------GDQAGTD 341 (390)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-------ccchHHH
Confidence 999999988776655533322222111 011222223333344555566666666666666654 1445999
Q ss_pred HHHHhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHH
Q 010904 428 TAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGM 470 (497)
Q Consensus 428 ~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~ 470 (497)
+++.+...++|..++|.+.|.+.|. |++..|...+++.+++.+
T Consensus 342 ~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 342 VTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 999888888777666544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-32 Score=272.72 Aligned_cols=382 Identities=17% Similarity=0.197 Sum_probs=264.8
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhh---HHHHHHHHHHHhhhhhccc
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVH---LLVYFVGVQIFCGLFQSIG 162 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~ 162 (497)
+.+.+++.+...+|..+|++++|+++||+|||+.+.++.++..+++++.+++ + |++.+.++|+++|++.|..
T Consensus 45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA-----PSYNNFWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccc
Confidence 4567899999999999999999999999999999999999999999999998 8 9999999999999999999
Q ss_pred chhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh----cCcceeeehhhHHHHHHHHHHHhheecCCcCC
Q 010904 163 WPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE----FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDL 238 (497)
Q Consensus 163 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~ 238 (497)
.+....++.|..|+++|++..++.+....+|.+++..++..+.. .+||..+++.++++++. ++..+++||+|++.
T Consensus 120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~-~~~~~~~pESP~wL 198 (451)
T PF00083_consen 120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLV-LLLRFFLPESPRWL 198 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccee
Confidence 99999999999999999999999999999999999887765542 35999999999988775 45668899999998
Q ss_pred CCCCChhhhhhhhhc-cCCcc-ccccccccccCCCCchhhhhHHHHhhCCc----hHHHHHHHHHHHH-HHHHHHHHHHH
Q 010904 239 GFELPGKEVELMNVE-NGDKV-ENEEVGLLESGSSGSLQAIGFLEAWKLPR----VAPFAFCLFFSKL-VAYTFLYWLPF 311 (497)
Q Consensus 239 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~ 311 (497)
..+++.++++...+. +..+. +++.++..++.++..+.+..++++++++. .........+... .......+.+.
T Consensus 199 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 278 (451)
T PF00083_consen 199 LSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPS 278 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccc
Confidence 777666655322222 11111 11111111111111111245666666643 2222222222222 22234445555
Q ss_pred HHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHH--h-hccCch---hHHH
Q 010904 312 YIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLY--R-TYGSIS---MITN 385 (497)
Q Consensus 312 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~---~~~~ 385 (497)
++++ .+.+.. -.......+..+++.+++.++.||+|||+.+..+..+.+++.+.+. . .....+ ....
T Consensus 279 i~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T PF00083_consen 279 IFEN-----AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILS 351 (451)
T ss_pred cccc-----cccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5555 366655 2333445566777777888999999999998888877777666553 1 111111 1222
Q ss_pred HHHHHHHhhhcc-CcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHHHH
Q 010904 386 IPLMFLSGLLVN-GPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIV 463 (497)
Q Consensus 386 ~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~ 463 (497)
+....+..+..+ +..+....+..|.+|++.| +++.|+....+.+++.+++.+...+.+. +....+.+.++
T Consensus 352 i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R--------~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~ 423 (451)
T PF00083_consen 352 IVFLALFFAFFSLGWGPLPWIYTAELFPTKVR--------STGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAG 423 (451)
T ss_pred ceeeeecccccccccccccccccccccccccc--------ccccccccccccccccccccccccccccccccccchhhHH
Confidence 222222222333 3344455677888887543 8889999999999999999998888877 53566666666
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcCCC
Q 010904 464 SILFAGMFLIRIVKAEIREKLNEGKW 489 (497)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (497)
+++++.++...+ -+|+++++.+|.+
T Consensus 424 ~~~i~~i~~~~~-lpET~g~~l~ei~ 448 (451)
T PF00083_consen 424 VCLIAIIFVYFF-LPETKGKTLEEIQ 448 (451)
T ss_pred HHHHHHhheeEE-EeeCCCCCHHHHH
Confidence 666666554443 4577777666544
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=224.99 Aligned_cols=378 Identities=14% Similarity=0.152 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccccc
Q 010904 35 TALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTI 114 (497)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~ 114 (497)
..+..+++.....++.....+..++.+.+|+ |- .....|+.+.+.++.+++.++.|+++|.|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~a~~l~~I~~di----------G~--------~~~~~w~~~~~~l~~av~~~~~G~LSDlf 105 (599)
T PF06609_consen 44 ASFAAFSLAVIAAYFVLVLPASILPYINADI----------GG--------SDNWSWFSTAWTLASAVSFPFVGRLSDLF 105 (599)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHhc----------CC--------CccchHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 3334455555556666666677778899887 32 45678999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHH
Q 010904 115 DLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGN 194 (497)
Q Consensus 115 Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 194 (497)
|||.+++.+.++..+|+++++.+ +|...++++..+.|+|.|.... ....++|..|.|.|....++.....-...
T Consensus 106 GRr~~~i~g~~l~vvG~Iv~atA-----~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~ 179 (599)
T PF06609_consen 106 GRRYFFIIGSLLGVVGSIVCATA-----QNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITT 179 (599)
T ss_pred cchHHHHHHHHHHHhHHHHhhcC-----CcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhh
Confidence 99999999999999999999999 9999999999999999877654 45668999999999988887776666666
Q ss_pred HHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCC--CC--hhhhh----------------hhhhc
Q 010904 195 IIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFE--LP--GKEVE----------------LMNVE 253 (497)
Q Consensus 195 ~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~--~~~~~----------------~~~~~ 253 (497)
..++.++..+. +.+|||.|++..+...+..++.+++... |++...+ +. +++-+ ....+
T Consensus 180 ~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~P-P~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl 258 (599)
T PF06609_consen 180 WISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFP-PPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGL 258 (599)
T ss_pred cccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCC-CchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 67777776665 5689999999998877766655444432 2221111 11 11111 01111
Q ss_pred cCCcc--ccccccccc--------------cCC--CCchhhhhHHHHhhCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010904 254 NGDKV--ENEEVGLLE--------------SGS--SGSLQAIGFLEAWKLPR-VAPFAFCLFFSKLVAYTFLYWLPFYIR 314 (497)
Q Consensus 254 ~~~~~--~~~~~~~~~--------------~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (497)
+-... ..+.....- ..+ ...+++.-+.+++|+++ +....++.++....++....+.|....
T Consensus 259 ~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~ 338 (599)
T PF06609_consen 259 SWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVV 338 (599)
T ss_pred hccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111 112111100 011 12245566778899854 555566777777788888889999988
Q ss_pred HhhhcccCCCcc---hhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHH-HHHHHHHHHHHHHHHhhccCchhHHHHHHHH
Q 010904 315 HTAVAGVHLSHK---TAGILSTIFDIGGVFGGILAGLISDMIEARAVT-SVAFLLLSIPALVLYRTYGSISMITNIPLMF 390 (497)
Q Consensus 315 ~~~~~~~g~s~~---~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (497)
.. ++-++. ..++.....+++..++.++.|.+..++++-|.. +++..++.+.+.++....+ ++....+...+
T Consensus 339 ~v----f~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~-~n~~~~i~~~~ 413 (599)
T PF06609_consen 339 NV----FGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRP-DNKNAAIAFLV 413 (599)
T ss_pred hh----ccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccC-CCcchHHHHHH
Confidence 87 666653 567888888999999999999999888776555 4555555544444443322 33334456667
Q ss_pred HHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceee
Q 010904 391 LSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYIS 450 (497)
Q Consensus 391 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 450 (497)
+.|++.+....+....++-.+|+ ++.|++.|+..+++.+|+.++..+...+.
T Consensus 414 l~g~giG~~~~~~~~~~ql~~p~--------~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 414 LAGFGIGGILVPAIVIAQLIVPD--------EDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHhHHHHHHHHHHeeEeeeCc--------hHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77888777766666555555554 66799999999999999999987765444
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-26 Score=223.37 Aligned_cols=376 Identities=13% Similarity=0.054 Sum_probs=256.9
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccc-cCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 010904 76 GWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDT-IDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIF 154 (497)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l 154 (497)
|++ ..+.|++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++ ++++.+++.|++
T Consensus 44 g~s-------~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~l 111 (475)
T TIGR00924 44 GFS-------QEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS-----IYPDLIFYGLGT 111 (475)
T ss_pred CCC-------HHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc-----ccHhHHHHHHHH
Confidence 777 9999999999999999999999999999 899999999999999999999997 888899999999
Q ss_pred hhhhhcccchhhhhhhhcccCccc---chhhHHHHHHHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhh
Q 010904 155 CGLFQSIGWPCVVAVLGNWFGKAK---RGLIMGVWNSHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLF 230 (497)
Q Consensus 155 ~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~ 230 (497)
.|+|.|...|...++++|++|+++ |+++.++++.+.++|.++||.+++.+.+ .|||+.|++.++..++. ++.+++
T Consensus 112 ~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~-~l~~~~ 190 (475)
T TIGR00924 112 IAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG-LLTFFA 190 (475)
T ss_pred HHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH-HHHHHH
Confidence 999999999999999999998754 8889999999999999999999999984 69999999987655443 444444
Q ss_pred eecCCcCCCCCC---Chhhhhhhhh---------------ccCCcccccccccc---------ccCCCCchhhhhHHHHh
Q 010904 231 LVVRPEDLGFEL---PGKEVELMNV---------------ENGDKVENEEVGLL---------ESGSSGSLQAIGFLEAW 283 (497)
Q Consensus 231 ~~~~p~~~~~~~---~~~~~~~~~~---------------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 283 (497)
.++..++...++ ++++.+.... ....+.... .... .......++.....+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (475)
T TIGR00924 191 GRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIA-NILLMTVTLAVIIFFFRLAFKPRLDAVARN 269 (475)
T ss_pred cccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhccCCHHHHh
Confidence 442211111000 0000000000 000000000 0000 00000000000001111
Q ss_pred hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcc----hhhHHHhhhhhhhhhhhhhhHHhHHhhhhh---
Q 010904 284 KLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHK----TAGILSTIFDIGGVFGGILAGLISDMIEAR--- 356 (497)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~----~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~--- 356 (497)
|...+..+.+...+....+....+.++.+.++. .+.+.. ..+++.+...+..++..++..++-.|..||
T Consensus 270 ~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~----~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~ 345 (475)
T TIGR00924 270 KMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNN----MHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKD 345 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh----ccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 222344445555555666666677778877764 233322 266778888888888877766544444332
Q ss_pred --hH--HHHHHHHHHHHHHHHHhh---c---cCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHH
Q 010904 357 --AV--TSVAFLLLSIPALVLYRT---Y---GSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALAT 426 (497)
Q Consensus 357 --~~--~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 426 (497)
.. +.++.++.++++..+... . ...+.++.++..++.+++.....+...+...+..|++ .+|+
T Consensus 346 ~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~--------~~g~ 417 (475)
T TIGR00924 346 PTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQR--------LMGQ 417 (475)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH--------HHHH
Confidence 22 356666666665554421 0 1357788888999999999999999999999999874 4499
Q ss_pred HHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHHHh
Q 010904 427 VTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 427 ~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
++|+......+|..+++.+.....+. ++...|...++..++..++.+...+
T Consensus 418 ~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 418 MLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888776555 7777787777777776666655443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-27 Score=208.47 Aligned_cols=349 Identities=16% Similarity=0.168 Sum_probs=229.5
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
....|.+.+.|++.+.+.++.+|.++||+|||+++++|++..++..++.+.+ .|+..++++|++.|+.-|-. ..
T Consensus 67 ~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S-----~~F~afv~aR~l~Gi~kgnl-~v 140 (451)
T KOG2615|consen 67 VFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS-----RNFAAFVLARFLGGIFKGNL-SV 140 (451)
T ss_pred chhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhccCch-HH
Confidence 6667999999999999999999999999999999999999999999999999 99977888899999998776 55
Q ss_pred hhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh---cCcceeeehhhHHHHHHHH----HHHhheecCCcCC
Q 010904 166 VVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE---FGWGWSFVLPGFLVIFVGV----FVFLFLVVRPEDL 238 (497)
Q Consensus 166 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---~gwr~~f~~~~~~~~~~~~----~~~~~~~~~p~~~ 238 (497)
..++++|.+++++|+++++.+..++++|.++||.+|+++.. ..=+.+|...+.+..+.+. ...+++||+-+.+
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~r 220 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLR 220 (451)
T ss_pred HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccch
Confidence 68999999999999999999999999999999999999986 2223334443333332222 2445677763322
Q ss_pred CCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHH-------HHHHHHHHHHHHHHHHHHHH
Q 010904 239 GFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPF-------AFCLFFSKLVAYTFLYWLPF 311 (497)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 311 (497)
+.. ++.. +..+..++.. + ..+.....-...+||+..... .+..+.+...+.....+.+.
T Consensus 221 k~~-~~~~-----~~~~~~~~~~--~------~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~ 286 (451)
T KOG2615|consen 221 KRN-DEHS-----TLQEAADDRL--A------LLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLF 286 (451)
T ss_pred hhc-cccc-----chhhhhhhhh--h------hcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 222 1000 0000000000 0 000011112234444443221 12222222222222333333
Q ss_pred HHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhh-hhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHH
Q 010904 312 YIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIE-ARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMF 390 (497)
Q Consensus 312 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (497)
+.+. ++|+++.+.|.+.+..++.+.+.+....+..+|.. .-+..........+..+++.. .............
T Consensus 287 l~~~----rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls--~~~~~~~l~~~s~ 360 (451)
T KOG2615|consen 287 LTHG----RFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLS--LARTPVVLYLGST 360 (451)
T ss_pred hhcC----ccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHh--ccccchhhhHHHH
Confidence 3233 38999999999999999888887777777777654 222222233333333333322 1233455566666
Q ss_pred HHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc--CchHHHHHHHHHHHHH
Q 010904 391 LSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFMLIVSILFA 468 (497)
Q Consensus 391 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~~~~~~~ 468 (497)
+..+......+..+..+....|.++ +|+++|+....+.++.++||.+.|.+... +-+.++..-+.+.++.
T Consensus 361 l~sf~~A~~vt~Lt~Lv~~~~~~~q--------rG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~~ 432 (451)
T KOG2615|consen 361 LKSFSTASVVTCLTSLVHKYGPQSQ--------RGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLIP 432 (451)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCccc--------chHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHHH
Confidence 7777776777777777777777644 49999999999999999999999998887 4455554444444443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-26 Score=229.70 Aligned_cols=363 Identities=16% Similarity=0.137 Sum_probs=255.1
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
.....+..+++++|..+|++++|+++||+|||+++++++++..++.++.+++ +|++.+++.|++.|++.++....
T Consensus 117 ~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-----~~~~~~~~~Rfl~G~~~~~~~~~ 191 (521)
T KOG0255|consen 117 STLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-----PNYWMFLIFRFLSGFFGSGPLTV 191 (521)
T ss_pred HhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHhhccchhHH
Confidence 7778899999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhhcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChh
Q 010904 166 VVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGK 245 (497)
Q Consensus 166 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 245 (497)
...++.|++++++|+.+..+ ......+..+++..++++.+ +||+.+++..+++++..++ +++.||+|++...+++.+
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~~ 268 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGRID 268 (521)
T ss_pred hHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCchH
Confidence 99999999999999999999 77777788888888887776 8999999999998886444 677779999987776665
Q ss_pred hhhh-hhhccC---Ccccc--c--cc-cccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010904 246 EVEL-MNVENG---DKVEN--E--EV-GLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHT 316 (497)
Q Consensus 246 ~~~~-~~~~~~---~~~~~--~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (497)
++.. .++..+ ...+. . .. ..........+++..+.++++.|++....+...+..+.......-++.....
T Consensus 269 ~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~- 347 (521)
T KOG0255|consen 269 EAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSG- 347 (521)
T ss_pred HHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhh-
Confidence 5422 122111 11111 0 00 0000111111223457788888865555554444443333333333333333
Q ss_pred hhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhc
Q 010904 317 AVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLV 396 (497)
Q Consensus 317 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 396 (497)
.|.+. .......+.....+....+...|++|||.....+..+..++.+...........+.......+..++.
T Consensus 348 ----lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (521)
T KOG0255|consen 348 ----LGGNI---YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFI 420 (521)
T ss_pred ----cCchH---HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 34443 23334444466777777789999999999999998888888887776543333123334444455555
Q ss_pred cCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeeccCchHHHHHHHHHHHHHHHHH
Q 010904 397 NGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFL 472 (497)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~ 472 (497)
+..+........+.+|+.. |+.+.+..+....++++++|.+.-..........+..++....+.+++.
T Consensus 421 ~~~~~~~~~~~~el~pt~~--------r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 488 (521)
T KOG0255|consen 421 GSAFNLIFLYSAELIPTVV--------RNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLS 488 (521)
T ss_pred HHHHHHHHHHHHhhccHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Confidence 6666777888889998854 3889999999999999999988644333222222222344444444444
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=214.57 Aligned_cols=408 Identities=13% Similarity=0.090 Sum_probs=282.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccc
Q 010904 31 FHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHV 110 (497)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l 110 (497)
.+||.+++.......... ..+.++...|.+.+++ |++ ..+++++.+.. ..+..++++.|++
T Consensus 24 ~~Rw~~lva~~~~~~~~g-~~y~fsv~s~~L~~~l----------gls-------~~~l~~i~svg-~~~g~~~lp~G~L 84 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTS-FMYAFNLISGAMQARY----------NLT-------QRDLSTITTVG-IAVGYFLLPYSFI 84 (591)
T ss_pred cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh----------CcC-------HHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 456655555444444333 2345677889999999 888 89999988763 4556788889999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHHhhhhhhh-hhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHH
Q 010904 111 GDTIDLRLFLVFGMMGSGLFTIIFGLAYWLS-VHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSH 189 (497)
Q Consensus 111 ~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 189 (497)
.||+|||++++++.+++++++++++++.... .++++.+++.|++.|+|.+...+.+...+.+||| ++||++.|+...+
T Consensus 85 ~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~ 163 (591)
T PTZ00207 85 YDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTF 163 (591)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHH
Confidence 9999999999999999999999999861110 1489999999999999999999999999999997 7899999999999
Q ss_pred hhhHHHHHHHHhhhHhhcCcceeeehhhHHHHHHHHHHHhheecCCcCCC--CC---CChhhh-----------------
Q 010904 190 TSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLG--FE---LPGKEV----------------- 247 (497)
Q Consensus 190 ~~~G~~~g~~~~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~--~~---~~~~~~----------------- 247 (497)
.++|.++.+.+...+...+|++.|++.+++.++.+++.+.++++.|.... .+ +++++.
T Consensus 164 ~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~ 243 (591)
T PTZ00207 164 TGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMW 243 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCce
Confidence 99999864444444444579999999999999998888888877653321 11 111111
Q ss_pred h-----------------------------------hhhhc----------------c---CC-ccccccccc-------
Q 010904 248 E-----------------------------------LMNVE----------------N---GD-KVENEEVGL------- 265 (497)
Q Consensus 248 ~-----------------------------------~~~~~----------------~---~~-~~~~~~~~~------- 265 (497)
+ ..... . ++ +.+.+..+.
T Consensus 244 ~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (591)
T PTZ00207 244 RFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEV 323 (591)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccc
Confidence 0 00000 0 00 000000000
Q ss_pred cccC--------C-CCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcch--hhHHHhh
Q 010904 266 LESG--------S-SGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKT--AGILSTI 334 (497)
Q Consensus 266 ~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~--~g~~~~~ 334 (497)
.+.+ + ...+...++++.+++..+|.+.+..+|...........+.+..+.. -|.+... ...+.++
T Consensus 324 ~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl----~g~~~~~~~~~~~vsL 399 (591)
T PTZ00207 324 SAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTAL----AGEAPDDALNTLLTVL 399 (591)
T ss_pred cccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHh----cCCCCCccceeeehhh
Confidence 0000 0 0011223788999999999999999999888888888888888874 2663322 3337788
Q ss_pred hhhhhhhhhhhhHHhHHhhhhhh--------H-HHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHH
Q 010904 335 FDIGGVFGGILAGLISDMIEARA--------V-TSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITT 405 (497)
Q Consensus 335 ~~~~~~~~~~~~g~l~dr~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 405 (497)
.++++.+|++..|.++....+|+ . +.+..+ +.++.++++...+ ...+++..++.|++.|..++....
T Consensus 400 ~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p---~~~L~~~~~lvg~~~G~~~~~~~~ 475 (591)
T PTZ00207 400 NGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLP---KAALPLPYFIAAFANGFMAATIAL 475 (591)
T ss_pred hhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCC---ccHhHHHHHHHHHHhhHhHHHHHH
Confidence 99999999999999884333332 1 222223 4444444444322 146778888999999999999999
Q ss_pred HHHhhcccccccccccchhHHHHHHHhhhhhhhhhhh-hcccceeecc-----------C---chHHHHHHHHHHHHHHH
Q 010904 406 AVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALG-PLLAGYISTR-----------G---WNSVFFMLIVSILFAGM 470 (497)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~-~~~~g~l~~~-----------g---~~~~~~~~~~~~~~~~~ 470 (497)
.+.+.+.. +.|+-.-+.....-+|+.+. -.+.|.++|+ | ++..|+++++++.++.+
T Consensus 476 i~selFgk---------~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~ 546 (591)
T PTZ00207 476 VTRTIFAK---------DPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFI 546 (591)
T ss_pred HHHHHhcc---------chHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHH
Confidence 99999872 23666665555555666555 3567777765 1 67889999888888877
Q ss_pred HHHHH
Q 010904 471 FLIRI 475 (497)
Q Consensus 471 ~~~~~ 475 (497)
....+
T Consensus 547 ~s~~l 551 (591)
T PTZ00207 547 TSTYV 551 (591)
T ss_pred HHhhe
Confidence 76543
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-24 Score=186.80 Aligned_cols=360 Identities=15% Similarity=0.110 Sum_probs=259.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccc
Q 010904 31 FHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHV 110 (497)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l 110 (497)
..|...++..|+.-+-.++.....+.+..+...|. +++ .++..++.+.|.....+..+++|++
T Consensus 40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~----------ni~-------~akftLlYsvYSwPNvVlcffgGfl 102 (459)
T KOG4686|consen 40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDS----------NIE-------YAKFTLLYSVYSWPNVVLCFFGGFL 102 (459)
T ss_pred hhHHHHHHHHHHhcccceeecCCchhhhhhhhccc----------ccc-------eeeeeeeeeeccCCCEEEeeeccee
Confidence 34556666666666777778888888888888887 777 8899999999999999999999999
Q ss_pred ccc-cCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHH
Q 010904 111 GDT-IDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSH 189 (497)
Q Consensus 111 ~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 189 (497)
.|| +|-|..-++-++...++-++++.. ...+.+|.+..+|++.|+|.-...++.+++..-||..||.+.++|+....
T Consensus 103 idr~fgir~gtii~~~fv~~GqliFa~G--gi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSv 180 (459)
T KOG4686|consen 103 IDRRFGIRLGTIILCIFVFLGQLIFAAG--GISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSV 180 (459)
T ss_pred ehhhhhhhHHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHH
Confidence 995 787776666666666777766643 22389999999999999999988899999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhHhh-cC--c----ceeeeh-------hhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccC
Q 010904 190 TSIGNIIGSVLASGVLE-FG--W----GWSFVL-------PGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENG 255 (497)
Q Consensus 190 ~~~G~~~g~~~~~~l~~-~g--w----r~~f~~-------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 255 (497)
.-+|..+--.+.+++.+ .+ . +...-+ .....++.+. ..-+. | ++.+ .+...++
T Consensus 181 AR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical-~lg~~-D---------~rAe--rilh~e~ 247 (459)
T KOG4686|consen 181 ARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICAL-SLGLS-D---------DRAE--RILHLEE 247 (459)
T ss_pred HHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH-Hhhhh-h---------hHHH--HHHhhhc
Confidence 99998876666666653 11 0 000000 1111111110 00000 0 0001 0001111
Q ss_pred CccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhh
Q 010904 256 DKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIF 335 (497)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~ 335 (497)
+.. .+.. +.....-+ .|.+|.+.+.+++...+.+.+...-|.++++. +|+|+..++.+.+..
T Consensus 248 g~~-Ge~p------------kLtdv~~f-~ppfw~~~iicv~yyva~fPFi~lg~~fF~~r----fGlS~~~a~~i~s~v 309 (459)
T KOG4686|consen 248 GFL-GEEP------------KLTDVNTF-YPPFWVLVIICVLYYVAWFPFITLGPMFFQKR----FGLSAVSAGNILSTV 309 (459)
T ss_pred Ccc-cCCc------------cccccccc-CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHh----hCCChhhccchhhhh
Confidence 100 0000 00001111 47899999999999999999999999999999 999999999999988
Q ss_pred hhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhccccc
Q 010904 336 DIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQD 415 (497)
Q Consensus 336 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 415 (497)
.....+.+++.|.++||.|++.+.+....+..+..-...++ +.+..+..+.+.|.............++..+|+
T Consensus 310 y~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F----t~lsPy~~m~~lGLsysllAcslWP~va~~vpE-- 383 (459)
T KOG4686|consen 310 YGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF----TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPE-- 383 (459)
T ss_pred hhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh----hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCH--
Confidence 88888889999999999999988777666665554433332 233445666677777666555566677777776
Q ss_pred ccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc
Q 010904 416 LIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR 452 (497)
Q Consensus 416 ~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 452 (497)
++.|++.|+++.+.++|-++.|.+.|.+.|.
T Consensus 384 ------~qLGTaygf~qsIqNLgla~i~Iiag~i~d~ 414 (459)
T KOG4686|consen 384 ------EQLGTAYGFIQSIQNLGLAFIPIIAGFIADG 414 (459)
T ss_pred ------HHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence 4459999999999999999999999999998
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=202.55 Aligned_cols=387 Identities=13% Similarity=0.072 Sum_probs=235.3
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccc-cCCchhhHHHHHHHHHHHHHH
Q 010904 56 IVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDT-IDLRLFLVFGMMGSGLFTIIF 134 (497)
Q Consensus 56 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~ 134 (497)
.+..++.+++ |++ ..+.+++.+.+........+++|+++|| +|||++++++.++.+++.+++
T Consensus 43 ~l~~yl~~~l----------g~s-------~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~ 105 (500)
T PRK09584 43 IMAVYLVKQL----------GMS-------EADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALV 105 (500)
T ss_pred HHHHHHHHHc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 3555667888 887 8888888888776666667899999999 599999999999999999998
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCccc--chhhHHHHHHHhhhHHHHHHHHhhhHhh-cCcce
Q 010904 135 GLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAK--RGLIMGVWNSHTSIGNIIGSVLASGVLE-FGWGW 211 (497)
Q Consensus 135 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~gwr~ 211 (497)
+++ .++.+.+++.|+++|++.|...+...+++.|++|+++ |..++++++.+.++|..+||.+++++.+ .|||+
T Consensus 106 ~~~----~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~ 181 (500)
T PRK09584 106 AWS----GHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSV 181 (500)
T ss_pred HHh----cccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence 886 1356677889999999999999999999999998643 4568899999999999999999999984 79999
Q ss_pred eeehhhHHHHHHHH---HHHhheecCCcCCCCCCChhhhhh-----------hhhccCCccccccccccccC-----CCC
Q 010904 212 SFVLPGFLVIFVGV---FVFLFLVVRPEDLGFELPGKEVEL-----------MNVENGDKVENEEVGLLESG-----SSG 272 (497)
Q Consensus 212 ~f~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-----~~~ 272 (497)
.|++.++..++..+ .....++|.++....++.+..... .......+.+ ......... ...
T Consensus 182 ~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 260 (500)
T PRK09584 182 AFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQE-IARMALGVVALGIVVIF 260 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHH
Confidence 99997754444322 222233332211111111100000 0000000000 000000000 000
Q ss_pred chhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCc------chhhHHHhhhhhhhhhhhhhh
Q 010904 273 SLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSH------KTAGILSTIFDIGGVFGGILA 346 (497)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~------~~~g~~~~~~~~~~~~~~~~~ 346 (497)
........+.-+ ++.+.. +..++....++......|.++..... .+.+. ...+.+.+...+..++..++.
T Consensus 261 ~~~~~~~~~~~~-~~~~~~-~~~~~~~i~f~~~~~q~~~~l~~~~~--~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~ 336 (500)
T PRK09584 261 GKEAFAMKGAAR-RKMIVA-FILMLEAIIFFVLYSQMPTSLNFFAI--RNVEHSILGIAVEPEQYQALNPFWIMIGSPIL 336 (500)
T ss_pred HHHHhhcCHHHH-HHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHH--HhccccccceEECHHHHHHHhHHHHHHHHHHH
Confidence 000000001111 122222 22223334444555555555443100 01111 124555566666666666666
Q ss_pred HHh----HHhhhhhhHHHHHHHHHHHHHHHHHhhcc------CchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccc
Q 010904 347 GLI----SDMIEARAVTSVAFLLLSIPALVLYRTYG------SISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDL 416 (497)
Q Consensus 347 g~l----~dr~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 416 (497)
+++ .+|.+..+.+.++.++.+++.+.+..... ..+.++.+...++.+++.....+.....+.+..|++
T Consensus 337 ~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~-- 414 (500)
T PRK09584 337 AAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQR-- 414 (500)
T ss_pred HHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHH--
Confidence 444 44444556778888888888777654311 123457777888899999999999999999998874
Q ss_pred cccccchhHHHHHHHhhhhhhhhhhhhcccceee------c----c-CchHHHHHHHHHHHHHHHHHHHHH
Q 010904 417 IKGNSRALATVTAIIDGTGSVGAALGPLLAGYIS------T----R-GWNSVFFMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 417 ~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~------~----~-g~~~~~~~~~~~~~~~~~~~~~~~ 476 (497)
.+|+++|+......+|..++..+.+... + . ++...|...++..++..++.+...
T Consensus 415 ------~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~ 479 (500)
T PRK09584 415 ------LMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTA 479 (500)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999877665566665555443111 1 1 367788887777665555544443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-23 Score=189.59 Aligned_cols=400 Identities=14% Similarity=0.121 Sum_probs=297.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhc
Q 010904 28 TLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFA 107 (497)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~ 107 (497)
+..++||.++++..+-.+.+.+....+++...+..+-+ + + ....-|..-+|++.+....+++
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Y----------g-s-------~~~~~wlsmIym~v~vp~gf~~ 99 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFY----------G-S-------SSAADWLSMIYMVVSVPFGFAA 99 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHh----------c-c-------hHHHHHHHHHHHHHHHHHhhHH
Confidence 45678999999999999999999888888876666655 4 3 6677899999999999999999
Q ss_pred cccccccCCchhhHHHHHHHHHHHHHHhhhhhhhh-hHHH--HHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHH
Q 010904 108 GHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSV-HLLV--YFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMG 184 (497)
Q Consensus 108 g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 184 (497)
-|+.|++|-|...+++..+.++++.+-..+..... +.++ ....+..+.+.++-........+..-||++++|..+..
T Consensus 100 mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~ 179 (480)
T KOG2563|consen 100 MWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATV 179 (480)
T ss_pred HHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhh
Confidence 99999999999999999999999999888733211 4455 77889999999998888888899999999999999999
Q ss_pred HHHHHhhhHHHHHHHHhhhHhh-------cCcce--eeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccC
Q 010904 185 VWNSHTSIGNIIGSVLASGVLE-------FGWGW--SFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENG 255 (497)
Q Consensus 185 ~~~~~~~~G~~~g~~~~~~l~~-------~gwr~--~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 255 (497)
+-..++.+|.++|-++...+.. ..|.. .|+..+++..+..++..+..++.|+.+.........
T Consensus 180 ~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~-------- 251 (480)
T KOG2563|consen 180 LGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ-------- 251 (480)
T ss_pred HHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh--------
Confidence 9999999999999888887763 23544 355555555554455555556655554432222110
Q ss_pred CccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhh
Q 010904 256 DKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIF 335 (497)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~ 335 (497)
......+.++.++|+++....+++......+++..+.+-.-+.. .|++...+|......
T Consensus 252 ----------------~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-----sgY~~~~aG~ig~l~ 310 (480)
T KOG2563|consen 252 ----------------DASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-----SGYEGVFAGYIGALM 310 (480)
T ss_pred ----------------cCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc-----ccCCccccchhHHHH
Confidence 12256678999999999999888888877777777766655555 378888999999999
Q ss_pred hhhhhhhhhhhHHhHHhhhhhhHHH-HHHHHHHHHHHHH-HhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhccc
Q 010904 336 DIGGVFGGILAGLISDMIEARAVTS-VAFLLLSIPALVL-YRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGT 413 (497)
Q Consensus 336 ~~~~~~~~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 413 (497)
.+++++++++.|.+.||.+.-+... +......++.+.+ .........+..+....++|++..+.+|.......|...|
T Consensus 311 iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyP 390 (480)
T KOG2563|consen 311 IVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYP 390 (480)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccc
Confidence 9999999999999999987655443 3333333332222 2222233445566777788999889888887777777666
Q ss_pred ccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-C----chHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010904 414 QDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-G----WNSVFFMLIVSILFAGMFLIRIVKAEIRE 482 (497)
Q Consensus 414 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (497)
... ++..|+.+..+++-+.+-.++.+...+. + +...-+.+....++..++..+++...+|.
T Consensus 391 v~E--------~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 391 VAE--------GTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred cCC--------cccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 432 7889999999999999999988888776 4 44445555555555555555555433333
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=196.93 Aligned_cols=364 Identities=12% Similarity=0.041 Sum_probs=255.9
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccc----ccCCchhhHHH-HHHHHHHHHHHhhhhhhhhhHH-----
Q 010904 76 GWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGD----TIDLRLFLVFG-MMGSGLFTIIFGLAYWLSVHLL----- 145 (497)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l~~~-~~~~~i~~~~~~~~~~~~~~~~----- 145 (497)
|.+ ..+.+++..+..+...+.+++.|+++| |+||||.++++ .+...++.++.+++ ++.
T Consensus 35 g~~-------~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~-----~~~~~~~~ 102 (477)
T TIGR01301 35 GIP-------HAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA-----ADIGHLFG 102 (477)
T ss_pred CCC-------HHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC-----chhhhhcc
Confidence 777 899999999999999999999999999 59999988774 66666777777776 333
Q ss_pred ------------HHHHHHHHHhhhhhcccchhhhhhhhcccCcccc--hhhHHHHHHHhhhHHHHHHHHhhhHh--h---
Q 010904 146 ------------VYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKR--GLIMGVWNSHTSIGNIIGSVLASGVL--E--- 206 (497)
Q Consensus 146 ------------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~l~--~--- 206 (497)
+.++++-.+..++.....++..++++|.+|+++| +.+.++.+...++|.++|+.++++.. +
T Consensus 103 ~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~ 182 (477)
T TIGR01301 103 DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFP 182 (477)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 2333333344557777788889999999998765 68999999999999999999998752 1
Q ss_pred -----------cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchh
Q 010904 207 -----------FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQ 275 (497)
Q Consensus 207 -----------~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (497)
.+.|+.|++.+++.++..++..+..+|.|.......++++ .++. ++ .+..+.
T Consensus 183 ~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~------~~~~--~~---------~~~~~~ 245 (477)
T TIGR01301 183 FTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE------AAPP--SK---------HGEEAF 245 (477)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh------cccc--cc---------cchhhh
Confidence 1568889998888888878888888887642211100000 0000 00 000011
Q ss_pred hhh-HHHHhhC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcc------hh---h-HHHhhhhhhhhhhh
Q 010904 276 AIG-FLEAWKL-PRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHK------TA---G-ILSTIFDIGGVFGG 343 (497)
Q Consensus 276 ~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~------~~---g-~~~~~~~~~~~~~~ 343 (497)
... ++.+.+- |.++.+++..++.+++.+.+..|.+.|..+.. ++-++. +. | +......+...+.+
T Consensus 246 ~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v---~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s 322 (477)
T TIGR01301 246 FGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREV---YGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITS 322 (477)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH---cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112 2222233 45688999999999999999999999887532 443221 11 2 33444555556777
Q ss_pred hhhHHhHHhhhh-hhHHHHHHHHHHHHHHHHHhhccCc-----------------h-hHHHHHHHHHHhhhccCcchhHH
Q 010904 344 ILAGLISDMIEA-RAVTSVAFLLLSIPALVLYRTYGSI-----------------S-MITNIPLMFLSGLLVNGPYSLIT 404 (497)
Q Consensus 344 ~~~g~l~dr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~-~~~~~~~~~~~g~~~~~~~~~~~ 404 (497)
++..++.+|+|+ |+....+.++.++++....+..... . .+..++.+.+.|+.....+...+
T Consensus 323 ~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPf 402 (477)
T TIGR01301 323 IGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPF 402 (477)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhH
Confidence 788889999985 5555667666666665554432100 0 35667778889999999999999
Q ss_pred HHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc---CchHHHHHHHHHHHHHHHHHHHHHh
Q 010904 405 TAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR---GWNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
+.+++..+++. +..|..+|+.|.+..+.+.+.....|.+.+. +...++.+.++..+++++..++..+
T Consensus 403 al~s~~~~~~~------~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~ 472 (477)
T TIGR01301 403 ALASIRSSNLG------AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLP 472 (477)
T ss_pred HHHHHHccccC------CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCC
Confidence 99999988532 4459999999999999999999888874443 5567777888888888877776654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.5e-23 Score=201.62 Aligned_cols=344 Identities=14% Similarity=0.086 Sum_probs=240.9
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccc----cCCc-hhhHHHHHHHHHHH
Q 010904 57 VKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDT----IDLR-LFLVFGMMGSGLFT 131 (497)
Q Consensus 57 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~i~~ 131 (497)
+..+..+++ |++ ..++|.+.++..+..++..++.|+++|| +||| +.++.+.+..+++.
T Consensus 32 l~~~~t~~~----------gls-------~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~ 94 (444)
T PRK09669 32 LAYFYTDVF----------GLS-------AAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVC 94 (444)
T ss_pred HHHHHHHhc----------CCC-------HHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHH
Confidence 456677777 888 9999999999999999999999999998 7875 45667777777776
Q ss_pred HHHhhhhhh-hhhHHHHHHHHHHHhhhhhcccchhhhhhhhccc-CcccchhhHHHHHHHhhhHHHHHHHHhhhHh----
Q 010904 132 IIFGLAYWL-SVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWF-GKAKRGLIMGVWNSHTSIGNIIGSVLASGVL---- 205 (497)
Q Consensus 132 ~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~---- 205 (497)
++....+.. ....++++++..++.+.+......+..++.+|+. ++++|++..++......+|..+++.+...+.
T Consensus 95 ~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~ 174 (444)
T PRK09669 95 LLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILG 174 (444)
T ss_pred HHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 655443210 1234667777777777777777777789999998 4588999888888888888887776544333
Q ss_pred ----hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHH
Q 010904 206 ----EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLE 281 (497)
Q Consensus 206 ----~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (497)
+.+|+..+.+.++++++..+..++..+|.++... + ++.+....++.
T Consensus 175 ~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~------~------------------------~~~~~~~~~~~ 224 (444)
T PRK09669 175 KGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEV------D------------------------NSSSVWKDLKL 224 (444)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCC------c------------------------CCCCHHHHHHH
Confidence 1468888888888777766655666665432110 0 01113345778
Q ss_pred HhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHH
Q 010904 282 AWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSV 361 (497)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~ 361 (497)
++|||.++.+....++............+.|.+.. .+ ++...+.+.....+..+++.++.++++||+|+|+....
T Consensus 225 ~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~----~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~ 299 (444)
T PRK09669 225 LLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYV----LL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKW 299 (444)
T ss_pred HhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeee----cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 89999998887777666555544444444444433 22 23334445555667788888999999999999998887
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhh
Q 010904 362 AFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAAL 441 (497)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 441 (497)
+.....+..+.+.+ .+..+.+..++..++.|++.+...+...+.+++.++.++. ....|..|...|..+....+|..+
T Consensus 300 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~-~~G~r~~g~~~s~~~~~~klg~al 377 (444)
T PRK09669 300 TIVAFVILSALIFF-IPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEK-RSGRRLDGLVFSTNLFAIKLGLAI 377 (444)
T ss_pred HHHHHHHHHHHHHH-hCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hcCcCcchHHHHHHHHHHHHHHHH
Confidence 76655544433333 2234555566667788998888888888888877764332 222345588999999999999999
Q ss_pred hhcccceeecc-Cc
Q 010904 442 GPLLAGYISTR-GW 454 (497)
Q Consensus 442 ~~~~~g~l~~~-g~ 454 (497)
++.+.|.+.+. ||
T Consensus 378 g~~i~g~ll~~~Gy 391 (444)
T PRK09669 378 GGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999988876 54
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-21 Score=189.49 Aligned_cols=354 Identities=17% Similarity=0.148 Sum_probs=274.9
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHH-HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccch
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFG-MMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWP 164 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~-~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 164 (497)
.+..++..++..+..++..++.|.++|+-|+||.++.. ..+..+++.+..+. ..++++...+.-++.-++.+...+
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v---~~~~~~~~~~l~iia~v~~~~~~v 145 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV---SPGQWWLALVLFIIANVGYEASNV 145 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh---CcchHHHHHHHHHHHHHHHHHHHH
Confidence 44567888999999999999999999999987765544 44445566655553 124555556666666678888888
Q ss_pred hhhhhhhcccCcccc--------------------------hhhHHHHHHHhhhHHHHHHHHhhhHh-h--------cCc
Q 010904 165 CVVAVLGNWFGKAKR--------------------------GLIMGVWNSHTSIGNIIGSVLASGVL-E--------FGW 209 (497)
Q Consensus 165 ~~~~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~~~~~l~-~--------~gw 209 (497)
...+++.|..+++++ ++..+.-.....+|.++...+.-.+. . .+-
T Consensus 146 fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~ 225 (477)
T PF11700_consen 146 FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAI 225 (477)
T ss_pred HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhh
Confidence 899999999999888 89999988888888888777666554 1 124
Q ss_pred ceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchH
Q 010904 210 GWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVA 289 (497)
Q Consensus 210 r~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (497)
|..+.+.++.-++..+..++++||.|+.+..++...... ..-++-...++++.|+|...
T Consensus 226 r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~---------------------~g~~~l~~t~k~~~~~~~~~ 284 (477)
T PF11700_consen 226 RVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLR---------------------FGFKRLWRTFKEIRKLRQLF 284 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHH---------------------HHHHHHHHHHHHHHhChHHH
Confidence 888888898888888999999998876322211111000 00112234567777889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhh--hHHHHHHHHHH
Q 010904 290 PFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEAR--AVTSVAFLLLS 367 (497)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~--~~~~~~~~~~~ 367 (497)
...++.++..-....+......|.++. +|++..+...+.....+.+++|+++.|++.||+|.| +.+........
T Consensus 285 ~fLia~~l~~dg~~ti~~~~~i~a~~~----lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~ 360 (477)
T PF11700_consen 285 LFLIAYFLYSDGVNTIISFAGIYATEV----LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI 360 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 999999999999999999999999988 899999999999999999999999999999999998 67666655554
Q ss_pred HHHHHHHh-----hccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhh
Q 010904 368 IPALVLYR-----TYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALG 442 (497)
Q Consensus 368 ~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 442 (497)
+..+...+ .....+.+.+++..++.|++.++.++..-++.++..|+.++ +..+|++...+...+.+|
T Consensus 361 ~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e--------~efFgly~i~gk~ss~lG 432 (477)
T PF11700_consen 361 IIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGRE--------AEFFGLYAITGKASSWLG 432 (477)
T ss_pred HHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchh--------hHHHHHHHHHHHHHHHHH
Confidence 43333222 11124566778888899999999999999999999998543 999999999999999999
Q ss_pred hcccceeecc--CchHHHHHHHHHHHHHHHHHHHH
Q 010904 443 PLLAGYISTR--GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 443 ~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
|.+.|.+.+. +.+..+....++.+++.++....
T Consensus 433 Pll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 433 PLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 9999999998 58889988888888888776554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-22 Score=190.45 Aligned_cols=341 Identities=17% Similarity=0.204 Sum_probs=246.8
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccC-CchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccch
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTID-LRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWP 164 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 164 (497)
..|+|.+.+...+...++++++|.++||++ +||++.+..++.++........ ++++.+++.-++..+...+..|
T Consensus 36 ~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~-----~~f~~~~~~~~l~~~~~~p~~p 110 (400)
T PF03825_consen 36 GTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS-----SSFWWLFVIMLLFSFFFSPTMP 110 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHccHHH
Confidence 999999999999999999999999999986 5677777777777766666666 8899888888888888888888
Q ss_pred hhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHH-hhhHh-hcC---cceeeehhhHHHHHHHHHHHhheecCCcCCC
Q 010904 165 CVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVL-ASGVL-EFG---WGWSFVLPGFLVIFVGVFVFLFLVVRPEDLG 239 (497)
Q Consensus 165 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~-~~~l~-~~g---wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~ 239 (497)
...++..+... ++++-.|-.-...++|.+++... ++.+. ..+ ..+.+++.+..+++.+ ...+.+|+.|.++.
T Consensus 111 l~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~-~~~l~lp~~~~~~~ 187 (400)
T PF03825_consen 111 LSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLA-GFALFLPKTPPKRS 187 (400)
T ss_pred HHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHH-HHHHhCCCCccccc
Confidence 88888888774 45556666777777777776543 22222 222 2344555555554443 23345676662221
Q ss_pred CCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010904 240 FELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVA 319 (497)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (497)
.+.+. +++...+..+++|+|+++...+..++..........+.+.|+++.
T Consensus 188 ~~~~~---------------------------~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~--- 237 (400)
T PF03825_consen 188 AKESV---------------------------KKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQEL--- 237 (400)
T ss_pred cCCCc---------------------------ccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 11110 111222346899999999999999999989989999999999996
Q ss_pred ccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHH----HHHHhhh
Q 010904 320 GVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPL----MFLSGLL 395 (497)
Q Consensus 320 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~ 395 (497)
.|.+....+.+.++..++.++.-...+++.+|+|.++++.++.....+=..+..... ++.+..... ..+-|+.
T Consensus 238 -gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~--~~~~~~~~~~~l~q~lhG~t 314 (400)
T PF03825_consen 238 -GGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS--DPWPFIVALQLLGQLLHGLT 314 (400)
T ss_pred -ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHhhhhHH
Confidence 337788888888899999999999999999999999999988888777666655431 222222222 2356888
Q ss_pred ccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhh-hhhhhhhhcccceeecc-Cch------HHHHHHHHHHHH
Q 010904 396 VNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTG-SVGAALGPLLAGYISTR-GWN------SVFFMLIVSILF 467 (497)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~~~~~~~g~l~~~-g~~------~~~~~~~~~~~~ 467 (497)
.+..+.....++.+.+|++. ++++.++++... .+|..+|..+.|++.|+ |.+ ..+.+.+++.++
T Consensus 315 f~~~~~a~~~yi~~~~p~~~--------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~ 386 (400)
T PF03825_consen 315 FGLFHAASVRYIDRIAPPEL--------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALV 386 (400)
T ss_pred HHHHHHHHHHHHHHhCCccc--------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH
Confidence 87888888888988888754 489999988764 79999999999999998 444 344444444444
Q ss_pred HHHHHHHH
Q 010904 468 AGMFLIRI 475 (497)
Q Consensus 468 ~~~~~~~~ 475 (497)
..++.+.+
T Consensus 387 ~~~~f~~~ 394 (400)
T PF03825_consen 387 ILVLFVIL 394 (400)
T ss_pred HHHHHHhh
Confidence 44444443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=198.33 Aligned_cols=339 Identities=13% Similarity=0.079 Sum_probs=229.4
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccccc----CCchh-hHHHHHHHHHHH
Q 010904 57 VKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTI----DLRLF-LVFGMMGSGLFT 131 (497)
Q Consensus 57 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~-l~~~~~~~~i~~ 131 (497)
+.+++.+.+ |++ ..++|.+.+...+..++..++.|+++||. ||||. ++.+.+...+..
T Consensus 31 l~~y~~~~~----------gl~-------~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~ 93 (448)
T PRK09848 31 LLSYYTDVA----------GVG-------AAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFS 93 (448)
T ss_pred HHHHHHHHc----------CCC-------HHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHH
Confidence 445667767 777 99999999999999999999999999996 77764 456655555544
Q ss_pred HHHhhhh--hhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCc-ccchhhHHHHHHHhh-----hHHHHHHHHhhh
Q 010904 132 IIFGLAY--WLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGK-AKRGLIMGVWNSHTS-----IGNIIGSVLASG 203 (497)
Q Consensus 132 ~~~~~~~--~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~-----~G~~~g~~~~~~ 203 (497)
++....+ .......+.+++..++.+++.+...+...++..+..++ ++|.+..++-..+.+ ++..++|.++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 94 VLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred HHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4432111 00112344455566777888888888777877777754 678887766654433 445556655543
Q ss_pred Hhh------cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhh
Q 010904 204 VLE------FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAI 277 (497)
Q Consensus 204 l~~------~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (497)
... ..|+ .+.++++++..++.....||+++.+.. +.....
T Consensus 174 ~g~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~e~~~~~~~-------------------------------~~~~~~ 219 (448)
T PRK09848 174 SPEEMVSVYHFWT---IVLAIAGMVLYFICFKSTRENVVRIVA-------------------------------QPSLKI 219 (448)
T ss_pred CCCchhhhHHHHH---HHHHHHHHHHHHHHHcCcEeccCCCcc-------------------------------CCCHHH
Confidence 311 1233 233333333333333444554221100 011233
Q ss_pred hHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhh
Q 010904 278 GFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARA 357 (497)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 357 (497)
.+++++|||.++...+..++............|.|+++. +|.++...++......++.+++.++.+++.||+++|+
T Consensus 220 ~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~ 295 (448)
T PRK09848 220 SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYV----LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKN 295 (448)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeee----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 477899999999988888888888777778888888887 7877766655555556778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhh
Q 010904 358 VTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSV 437 (497)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 437 (497)
.+.++..+..++.+.+.+ .+..+.+...+..++.|++.+...+...+...+..+.++ .....|..|...|+.+....+
T Consensus 296 ~~~~g~~~~~i~~~~~~~-~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~-~~~g~r~~G~~~~~~~~~~kl 373 (448)
T PRK09848 296 TFLIGALLGTCGYLLFFW-VSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGE-YLTGVRIEGLTYSLFSFTRKC 373 (448)
T ss_pred HHHHHHHHHHHHHHHHHH-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HhhCccchhHHHHHHHHHHHH
Confidence 998888777776655543 223345555566677888888888888778777776543 223335569999999999999
Q ss_pred hhhhhhcccceeecc
Q 010904 438 GAALGPLLAGYISTR 452 (497)
Q Consensus 438 g~~~~~~~~g~l~~~ 452 (497)
|..+++.+.|.+.+.
T Consensus 374 g~aig~~i~g~~l~~ 388 (448)
T PRK09848 374 GQAIGGSIPAFILGL 388 (448)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988877654
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-22 Score=184.90 Aligned_cols=276 Identities=14% Similarity=0.151 Sum_probs=209.6
Q ss_pred hHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh----------------
Q 010904 143 HLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE---------------- 206 (497)
Q Consensus 143 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---------------- 206 (497)
.+++.++++-++.|.|.+...+..+.++++..+++++++.+++.+.++++|..+||.+++.+..
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~ 87 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE 87 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence 8899999999999999999999999999999999999999999999999999999999997762
Q ss_pred -cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhC
Q 010904 207 -FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKL 285 (497)
Q Consensus 207 -~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (497)
..|+++|++.+.+.++..++. .+.+ .|+.++. ++++. . ++ +....++.+++
T Consensus 88 ~~~~~~~yl~ia~~~~~~~i~~-~~~~-~p~~~~~--~~~~~------~----------------~~--~~~~~~~~~~~ 139 (310)
T TIGR01272 88 AAKVHTPYLLLAGALAVLAIIF-AFLP-LPELQEA--DVARV------S----------------SG--DTTQKTSAFQF 139 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHcc-CCCCCcc--ccccc------c----------------cc--cccchhhHHhh
Confidence 369999997777666554433 2332 1221110 00000 0 00 00012346778
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHH
Q 010904 286 PRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLL 365 (497)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 365 (497)
|.++...+..+++.....+...|++.|+.+.. .+|+++.+.+...+....+.++|+++.+++.||+++|+.+..+..+
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~--~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l 217 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPH--ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFL 217 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 88888888888888889999999999998630 1589999999999999999999999999999999999888777666
Q ss_pred HHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcc
Q 010904 366 LSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLL 445 (497)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 445 (497)
..+..++.... .+. ......++.|++.+..+|...+...+..+++ .+++.++. ..+.+|+++.|.+
T Consensus 218 ~~~~~~l~~~~---~~~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~---------~~~asai~-~~~~~Gg~i~P~l 283 (310)
T TIGR01272 218 AVLLSIGAALT---HGY-VAMWFVLALGLFNSIMFPTIFSLALNALGRH---------TSQGSGIL-CLAIVGGAIVPLL 283 (310)
T ss_pred HHHHHHHHHHc---CCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---------hhhhHHHH-HHHHhcchHHHHH
Confidence 66655444332 122 2234556789999999999888888887753 25666664 5678999999999
Q ss_pred cceeecc-CchHHHHHHH
Q 010904 446 AGYISTR-GWNSVFFMLI 462 (497)
Q Consensus 446 ~g~l~~~-g~~~~~~~~~ 462 (497)
.|.+.|. |.+.++++..
T Consensus 284 ~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 284 QGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHHHHhccchHHHHHHH
Confidence 9999997 8887776433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=199.53 Aligned_cols=348 Identities=10% Similarity=0.004 Sum_probs=242.0
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccc----ccCC-chhhHHHHHHHHHHH
Q 010904 57 VKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGD----TIDL-RLFLVFGMMGSGLFT 131 (497)
Q Consensus 57 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Gr-r~~l~~~~~~~~i~~ 131 (497)
+..+..+.+ |++ ..++|.+..+.-+--++..++.|+++| |+|| |+.++++.+..+++.
T Consensus 29 l~~yyt~v~----------Gls-------~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~ 91 (473)
T PRK10429 29 LMYYYTDVV----------GLS-------VGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL 91 (473)
T ss_pred HHHHHHHhc----------CCC-------HHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence 445556666 888 999999999999999999999999999 6699 556777888877776
Q ss_pred HHHhhhhhh-hhhHHHHHHHHHHHhhhhhcccchhhhhhhhccc-CcccchhhHHHHHHHhhhHHHHHHHHhhhHh----
Q 010904 132 IIFGLAYWL-SVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWF-GKAKRGLIMGVWNSHTSIGNIIGSVLASGVL---- 205 (497)
Q Consensus 132 ~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~---- 205 (497)
.++-..+.. ....+..+++..++.+++.....+...++..|.. ++++|.+..++-....++|..+.+.+...+.
T Consensus 92 ~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g 171 (473)
T PRK10429 92 FLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVG 171 (473)
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 655432100 1123556667777778888888888899999999 5799999999877777777666554443321
Q ss_pred ----hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHH
Q 010904 206 ----EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLE 281 (497)
Q Consensus 206 ----~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (497)
..+|+....+.+++.++..+..++..||.++....+..+ +++.+.+..++.
T Consensus 172 ~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-------------------------~~~~~~~~~~~~ 226 (473)
T PRK10429 172 GGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAE-------------------------GSHLTLKDIVAL 226 (473)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccccccc-------------------------ccCCCHHHHHHH
Confidence 135777777777766665555555566653221100000 011123344566
Q ss_pred HhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHH
Q 010904 282 AWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSV 361 (497)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~ 361 (497)
+++||.++.+....++..........+.+.|.+.. ..+....+.+.....++.+++.++.++++||+|+|+.+..
T Consensus 227 ~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~-----~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~ 301 (473)
T PRK10429 227 IYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYV-----IGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAG 301 (473)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEE-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 77898888888777777766666666666555553 3345566667777778889999999999999999999887
Q ss_pred HHHHHHHHHHHHHhh--ccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhh
Q 010904 362 AFLLLSIPALVLYRT--YGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGA 439 (497)
Q Consensus 362 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 439 (497)
+..+..++.+.+... ....+.+..++..++.|++.+..+....+..++.++.+ +.+...|..|...|..+....++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~-e~~tG~R~~G~~~s~~~~~~K~~~ 380 (473)
T PRK10429 302 ASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYG-EYKLGIRCESIAYSVQTMVVKGGS 380 (473)
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hHhcCccchhHHHHHHHHHHHHHH
Confidence 776655544443321 22334455556666778888877777778888776644 344555667999999999999999
Q ss_pred hhhhcccceeecc
Q 010904 440 ALGPLLAGYISTR 452 (497)
Q Consensus 440 ~~~~~~~g~l~~~ 452 (497)
.+++.+.|++.+.
T Consensus 381 al~~~i~g~~l~~ 393 (473)
T PRK10429 381 AFAAFFIGVVLGL 393 (473)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888765
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-22 Score=187.34 Aligned_cols=360 Identities=15% Similarity=0.109 Sum_probs=244.4
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHH---HHHHHHhhhhhhhhhHHHHHHHHH
Q 010904 76 GWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSG---LFTIIFGLAYWLSVHLLVYFVGVQ 152 (497)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~---i~~~~~~~~~~~~~~~~~~l~~~r 152 (497)
|++ .+++|.+.++..+...+.+++.|.++||+|.||-++....+.. ...+...+.+....+-+...+++-
T Consensus 39 GLs-------~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~ 111 (412)
T PF01306_consen 39 GLS-------GTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGG 111 (412)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTT
T ss_pred CCC-------HHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888 9999999999999999999999999999998876554433322 222222232111112122233333
Q ss_pred HHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhhcCcceeeehhhHHHHHHHHHHHhhee
Q 010904 153 IFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLV 232 (497)
Q Consensus 153 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~ 232 (497)
+..|++.....|+..+++.++. ++.+.-.|-.-...++|.+++..++|.+.+.+-+..||+....+++..++.++..|
T Consensus 112 i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~ 189 (412)
T PF01306_consen 112 IYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKP 189 (412)
T ss_dssp TTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--
T ss_pred HHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344444555566666655554 45556677778889999999999999998766778888877666666555555444
Q ss_pred cCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010904 233 VRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFY 312 (497)
Q Consensus 233 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (497)
+.++.....+.... ++++...+...+++|+|++|.+.+........+..+....|.|
T Consensus 190 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y 246 (412)
T PF01306_consen 190 DVPPQAEVADALGA-----------------------KKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIY 246 (412)
T ss_dssp -SSSSS-SSTTSSS-----------------------------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhhhhhccccc-----------------------CCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433221111000 0011123446789999999999888888777777777778888
Q ss_pred HHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 010904 313 IRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLS 392 (497)
Q Consensus 313 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (497)
....+.. .+.+....|.+.+...+..++...+..++.+|+|.|+.++++..++.+=.....+. ++.+...+.-.+-
T Consensus 247 ~~~~f~~-~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~---~~~~~i~~~klLH 322 (412)
T PF01306_consen 247 FASFFQS-AGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA---TNPWVISLIKLLH 322 (412)
T ss_dssp HHHTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-----SHHHHHHHHHHH
T ss_pred HHHHhcc-cccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh---cchHHHHHHHHHH
Confidence 8764110 23455678899999999999999999999999999999999988888776666553 5566666666777
Q ss_pred hhhccCcchhHHHHHHhhcccccccccccchhHHHHHHH-hhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHH
Q 010904 393 GLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAII-DGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGM 470 (497)
Q Consensus 393 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~ 470 (497)
++-.........-++.+.+|+ |..++...+. +...+++..+.+.+.|.++|+ |++.+|++++.+.+...+
T Consensus 323 ~~e~~l~lva~fkYI~~~fd~--------rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~l 394 (412)
T PF01306_consen 323 ALEFPLLLVAAFKYITAHFDK--------RLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTL 394 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHS-G--------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCH--------hHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHH
Confidence 777767777777888888875 5557888885 577799999999999999999 999999999988777777
Q ss_pred HHHHHHhhh
Q 010904 471 FLIRIVKAE 479 (497)
Q Consensus 471 ~~~~~~~~~ 479 (497)
+..+..+++
T Consensus 395 i~~f~l~~~ 403 (412)
T PF01306_consen 395 ISAFTLKKD 403 (412)
T ss_dssp HHHHHS--S
T ss_pred HheeeecCC
Confidence 766665443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=192.63 Aligned_cols=344 Identities=15% Similarity=0.139 Sum_probs=269.7
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccc----ccCCch-hhHHHHHHHHHHH
Q 010904 57 VKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGD----TIDLRL-FLVFGMMGSGLFT 131 (497)
Q Consensus 57 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~-~l~~~~~~~~i~~ 131 (497)
+.+...+.+ +++ +...|.+..+..+-.++..++.|.++| |+|||| .++++.+..+++.
T Consensus 24 ~~~f~~~~~----------gl~-------~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~ 86 (428)
T PF13347_consen 24 LLYFYTDVL----------GLS-------PALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSF 86 (428)
T ss_pred HHHHHHHHc----------CCC-------HHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHH
Confidence 345555666 777 889999999999999999999999999 899766 5667888888877
Q ss_pred HHHhhh-h--hhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccC-cccchhhHHHHHHHhhhHHHHHHHHhhhHhh-
Q 010904 132 IIFGLA-Y--WLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFG-KAKRGLIMGVWNSHTSIGNIIGSVLASGVLE- 206 (497)
Q Consensus 132 ~~~~~~-~--~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~- 206 (497)
+++... + ........++.+..++..++.........++..|..+ +++|.+..+.-.....+|.++...+...+..
T Consensus 87 ~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~ 166 (428)
T PF13347_consen 87 FLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSW 166 (428)
T ss_pred HHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 777654 2 1111244556777777899999999999999999997 4789999999999999988766666555441
Q ss_pred -------cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhH
Q 010904 207 -------FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGF 279 (497)
Q Consensus 207 -------~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (497)
.+|++..++.+++.++..++..+..+|.++....+ +++.+....+
T Consensus 167 ~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~----------------------------~~~~~~~~~~ 218 (428)
T PF13347_consen 167 FGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQ----------------------------EKKISLRDSL 218 (428)
T ss_pred hccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccc----------------------------ccccccccch
Confidence 16999999999999988888888888721111100 0112234457
Q ss_pred HHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHH
Q 010904 280 LEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVT 359 (497)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~ 359 (497)
+++++||.++.+....++............+.|.++. .|.+ ...+.......++.+++.++.++++||+|+|+..
T Consensus 219 ~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~v----l~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~ 293 (428)
T PF13347_consen 219 RSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYV----LGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVY 293 (428)
T ss_pred hhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHH----hcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeeh
Confidence 8899999999999998888888888888888888887 5666 5667777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhh
Q 010904 360 SVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGA 439 (497)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 439 (497)
..+..+..++.+++.+... .+.+..++..++.|++.+..+....+..++.++.++ ....+|..|...|+.+....++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e-~~tg~r~~g~~~s~~~~~~k~~~ 371 (428)
T PF13347_consen 294 IIGLLLAALGFLLLFFLGP-GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDE-WKTGRRREGMYFSVNSFFIKIGQ 371 (428)
T ss_pred hhhHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhHhhhcccccccccccccchhhHH-HhcCCCchHHHHHhhhhhhHHHH
Confidence 9999888888877766432 567788888889999999999888888888887554 33334666999999999999999
Q ss_pred hhhhcccceeecc
Q 010904 440 ALGPLLAGYISTR 452 (497)
Q Consensus 440 ~~~~~~~g~l~~~ 452 (497)
.+++.+.|.+.+.
T Consensus 372 ~la~~i~g~~l~~ 384 (428)
T PF13347_consen 372 GLAGAIVGLLLAL 384 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887665
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-22 Score=198.29 Aligned_cols=380 Identities=13% Similarity=0.074 Sum_probs=253.0
Q ss_pred HHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccC-
Q 010904 37 LVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTID- 115 (497)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G- 115 (497)
+.++...++..+........+.|.+.+++ |++ .++++...+...+...+-.+ +|+++||++
T Consensus 28 ~~~~~~~y~~qGl~~l~~~~~~~~l~~~l----------g~s-------~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i 89 (468)
T TIGR00788 28 LAIGLQVLFVKGIAGLMRLPLSPMLTDDL----------GLD-------GARYQRLVGLSSLGWALKPF-AGVMSDTFPL 89 (468)
T ss_pred HHHHHHHHHHhhHHHHhhhhhhHHHHHhc----------CCC-------HHHHHHHHHHHHHHHHHHHH-HHHHHHhcCC
Confidence 34444455555555334455677788888 888 99999999999999999666 999999998
Q ss_pred ----CchhhHHHHHHHH-HHHHHHhhhhhhhhhH-HHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHH---HH
Q 010904 116 ----LRLFLVFGMMGSG-LFTIIFGLAYWLSVHL-LVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMG---VW 186 (497)
Q Consensus 116 ----rr~~l~~~~~~~~-i~~~~~~~~~~~~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~---~~ 186 (497)
||+.++++.++.+ ++....+.. ++ .....+.+++.+++.+...++..++..|..+ +++....+ +.
T Consensus 90 ~G~rRr~~l~~~~~l~~~~~~~~l~~~-----~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~ 163 (468)
T TIGR00788 90 FGYTKRWYLVLSGLLGSAILYGLLPGK-----VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWM 163 (468)
T ss_pred CCccchHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHH
Confidence 7778888877763 433333333 34 4444458899999999999999999999998 55554333 33
Q ss_pred HHHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccc
Q 010904 187 NSHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGL 265 (497)
Q Consensus 187 ~~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
....++|.++|+.+++.+.+ .+||..|++.+.+.++. .+..++++|++.....+..+++... . . ......
T Consensus 164 ~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~~~~~~~~~--~---~---~~~~~~ 234 (468)
T TIGR00788 164 WGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERRAFVRPRIGTYLEMN--M---A---LLTLGV 234 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhcccccccccccccccchhh--h---h---hhhhhH
Confidence 44455899999999999885 69999999998887776 4555667775321111000000000 0 0 000000
Q ss_pred cccCCCCchhhhhHHHHhhCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhh
Q 010904 266 LESGSSGSLQAIGFLEAWKLPRVAPFAFCLFF-SKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGI 344 (497)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 344 (497)
.+...+.....++.+++|.++...+..++ ..........+. .+..+. .|+++...|......+++.+++..
T Consensus 235 ---~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f-~~~~~~----lG~s~~~~G~~~~~~~v~~i~g~~ 306 (468)
T TIGR00788 235 ---LANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVF-CATTQC----LPGGPSFSGMSKVVGNLGSLCGVG 306 (468)
T ss_pred ---HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeE-EEEccc----CCCCcchhhhHHHHHHHHHHHHHH
Confidence 00001112345666888888876665555 221111111100 022233 799999999999999999999999
Q ss_pred hhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhc-------cCchhHHHHHHHHHHhhhccCcchhHHHHHHhhccccccc
Q 010904 345 LAGLISDMIEARAVTSVAFLLLSIPALVLYRTY-------GSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLI 417 (497)
Q Consensus 345 ~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 417 (497)
+.+++.+|++.|+.+.++.++..++.+...... ...+.+......++.+++.+..+.+....+.+.+|++.+
T Consensus 307 ~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~e- 385 (468)
T TIGR00788 307 GYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCE- 385 (468)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCce-
Confidence 999999999999999888888777664432111 002222334445566677777777788889998887543
Q ss_pred ccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-C-----chHHHHHHHHHH
Q 010904 418 KGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-G-----WNSVFFMLIVSI 465 (497)
Q Consensus 418 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g-----~~~~~~~~~~~~ 465 (497)
|+..++.+.+.++|..+++.+.|.+.+. | ++..+....+..
T Consensus 386 -------gt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~ 432 (468)
T TIGR00788 386 -------SSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHS 432 (468)
T ss_pred -------ehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHH
Confidence 9999999999999999999988888876 4 665555444433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-19 Score=172.93 Aligned_cols=369 Identities=13% Similarity=0.082 Sum_probs=221.4
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccccc-CCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 010904 76 GWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTI-DLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIF 154 (497)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l 154 (497)
|++ +.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++++.. ..+...+.++..+
T Consensus 41 gls-------~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~----~~~~~~~~l~l~l 109 (493)
T PRK15462 41 KYD-------DNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS----EIHPSFLYLSLAI 109 (493)
T ss_pred CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh----hcchhHHHHHHHH
Confidence 777 89999999999999999999999999999 99999999999999998877653 0122334444445
Q ss_pred hhhhhcccchhhhhhhhcccCcc--cchhhHHHHHHHhhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhhe
Q 010904 155 CGLFQSIGWPCVVAVLGNWFGKA--KRGLIMGVWNSHTSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFL 231 (497)
Q Consensus 155 ~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~ 231 (497)
.++|.|...+...++++|.+|++ +|..+.++.+...++|..++|.+.+++. +.|||+.|.+.++. .+.+++.++..
T Consensus 110 i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaig-m~l~li~~~~~ 188 (493)
T PRK15462 110 IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVG-MIAGLVIFLCG 188 (493)
T ss_pred HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHH-HHHHHHHHHHh
Confidence 55667777787889999999875 6999999999999999999999999998 57999999987654 44444444433
Q ss_pred ecCCcCC-C--CCCChhhhhh--------hhh-----ccCCcc-cccccccccc---CC-----CCchhhhhHHHHhhCC
Q 010904 232 VVRPEDL-G--FELPGKEVEL--------MNV-----ENGDKV-ENEEVGLLES---GS-----SGSLQAIGFLEAWKLP 286 (497)
Q Consensus 232 ~~~p~~~-~--~~~~~~~~~~--------~~~-----~~~~~~-~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~ 286 (497)
++..++. . .++.+++... ... ...... +......... .. .....+.+..+ | +
T Consensus 189 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--r-~ 265 (493)
T PRK15462 189 NRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQ--R-K 265 (493)
T ss_pred hhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH--H-h
Confidence 3221110 0 0000000000 000 000000 0000000000 00 00000000000 1 1
Q ss_pred ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhh--h----
Q 010904 287 RV---APFAFCLFFSKLVAYTFLYWLPFYIRHTAVAG-VHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEA--R---- 356 (497)
Q Consensus 287 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~--~---- 356 (497)
++ ..+.+...+.+..+....+-+..|.++....+ +|++ ....+..++..+..++.+++.+++=.|..+ |
T Consensus 266 r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~ 344 (493)
T PRK15462 266 ELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRI 344 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 22 22223333333344444455556665531100 1222 224566677777777777777777555522 2
Q ss_pred -hHHHHHHHHHHHHHHHHHhhc---c---CchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHH
Q 010904 357 -AVTSVAFLLLSIPALVLYRTY---G---SISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTA 429 (497)
Q Consensus 357 -~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 429 (497)
.....+.++++++++.+.... . ..+.++.+...++..++--...|...+.+.+..|+ |.+|..+|
T Consensus 345 ~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~--------~~~g~~mg 416 (493)
T PRK15462 345 WGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIP--------GVTGVLTG 416 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChH--------HHHHHHHH
Confidence 136677777777776664311 1 13566777777888888888889999999999886 55699999
Q ss_pred HHhhhh-hhhhhhhhcccceeec------------c-CchHHHHHHHHHHHHH
Q 010904 430 IIDGTG-SVGAALGPLLAGYIST------------R-GWNSVFFMLIVSILFA 468 (497)
Q Consensus 430 ~~~~~~-~~g~~~~~~~~g~l~~------------~-g~~~~~~~~~~~~~~~ 468 (497)
+..... .+|..++..+.+...+ . .|...|...+.+.+++
T Consensus 417 ~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 417 IYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence 886533 4666665555444421 1 3556777777665555
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=170.22 Aligned_cols=338 Identities=16% Similarity=0.124 Sum_probs=265.0
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccc----cCCch-hhHHHHHHHHHHHHHHhhhhhh-hhhHHHHHH
Q 010904 76 GWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDT----IDLRL-FLVFGMMGSGLFTIIFGLAYWL-SVHLLVYFV 149 (497)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~l~ 149 (497)
|++ ....|.+..+--+--++.-|+.|.+.|| +||+| .++.+.+..++.+.++-.++.. ...+....+
T Consensus 44 Gis-------~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~ 116 (467)
T COG2211 44 GLS-------AALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYAL 116 (467)
T ss_pred CCc-------HHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHH
Confidence 788 8888888888888889999999999995 77654 6778888888888888776211 123566777
Q ss_pred HHHHHhhhhhcccchhhhhhhhcccC-cccchhhHHHHHHHhhhHHHHHHHHhhhHhh--------cCcceeeehhhHHH
Q 010904 150 GVQIFCGLFQSIGWPCVVAVLGNWFG-KAKRGLIMGVWNSHTSIGNIIGSVLASGVLE--------FGWGWSFVLPGFLV 220 (497)
Q Consensus 150 ~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--------~gwr~~f~~~~~~~ 220 (497)
+.-.+.+++......+-.++.+|+.+ ++||.+..++-+.+.++|..+...+...+.. .||+..-.+.++++
T Consensus 117 vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~ 196 (467)
T COG2211 117 VTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIG 196 (467)
T ss_pred HHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHH
Confidence 88888999999999998999999996 5899999999999999997776555544432 47888888888888
Q ss_pred HHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHH
Q 010904 221 IFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKL 300 (497)
Q Consensus 221 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (497)
.+..+..++..+|.+.+....++. .+.+....+..+++||.+...++...+...
T Consensus 197 ~i~~l~~~~~v~ER~~~~~~~~~~--------------------------~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~ 250 (467)
T COG2211 197 VILLLFCFFNVKERVVETQPTKTG--------------------------VKLKLKDSFLLIFKNRPLLLLLLMNLLLFI 250 (467)
T ss_pred HHHHHHHHHHhhcccCccccCccc--------------------------ccccHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 877777777777765422211110 112233345678899999988887887777
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCc
Q 010904 301 VAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSI 380 (497)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (497)
...........|.+.. .|.+.............+.+++.++..++.+|+|+|+....+.++..++.+.+.+.. ..
T Consensus 251 ~~~i~~s~~~yy~~y~----lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~-~~ 325 (467)
T COG2211 251 AFNIRGSIMVYYVTYV----LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP-AG 325 (467)
T ss_pred HHHHHhhhhheeEEEE----cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc-Cc
Confidence 7777778888888887 788888888888888888888899999999999999999999988888888877644 45
Q ss_pred hhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc
Q 010904 381 SMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR 452 (497)
Q Consensus 381 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 452 (497)
+.+..++..++.+++.+...+...+.+++.++ ..+..+..|..|...|.+..+.-+|.+++..+.|+..+.
T Consensus 326 ~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vD-yge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~ 396 (467)
T COG2211 326 SVVLIVVALIIAGVGTGIANPLPWAMVADTVD-YGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA 396 (467)
T ss_pred chHHHHHHHHHHHHHhhccccccHHHhcchhh-HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777788888888888888777776654 455666778889999999999999999999988888776
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=165.99 Aligned_cols=353 Identities=16% Similarity=0.102 Sum_probs=270.4
Q ss_pred CCCCccchhhHHHHHHHHHHHHhhccccccccCCchhh-HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcc
Q 010904 83 PDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFL-VFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSI 161 (497)
Q Consensus 83 ~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 161 (497)
.++.+..|...++..+..++.+++.|.++|+.|+||.. -....+..+++++..+.+ +..+++..++.-.+..++...
T Consensus 54 ~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~--~~s~~~~~l~~~il~~i~~~~ 131 (438)
T COG2270 54 ASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIP--PGSYLLLLLLFLILASIGFEF 131 (438)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHHhcch
Confidence 34467789999999999999999999999999977654 444555555556666651 112455667777788899999
Q ss_pred cchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHh--hhHhh--c---------------CcceeeehhhHHHHH
Q 010904 162 GWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLA--SGVLE--F---------------GWGWSFVLPGFLVIF 222 (497)
Q Consensus 162 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~--~~l~~--~---------------gwr~~f~~~~~~~~~ 222 (497)
..+...+++.+..++++-++..++-.....+|+.+.-++. ..... . .-|..+.+.++-.++
T Consensus 132 s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li 211 (438)
T COG2270 132 SNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLL 211 (438)
T ss_pred hheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHH
Confidence 9999999999999999989988887777777776654432 11111 1 246667777777777
Q ss_pred HHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHH
Q 010904 223 VGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVA 302 (497)
Q Consensus 223 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (497)
..+..++..+|.++.....++.-.. .-++-...++++.+++.+....++.++..-..
T Consensus 212 ~~iPm~~~v~~~~~~~~~~~~~l~~-----------------------g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv 268 (438)
T COG2270 212 FALPMILNVHDAEKISSPPPTALRN-----------------------GFKELKSTFKEIRGRKNLVLFLIARFFYIDGV 268 (438)
T ss_pred HHhHHHhcccccccccccchHHHHH-----------------------HHHHHHHHHHHHhcccchHHHHHHHHHHHhhH
Confidence 7777777777765432111000000 01223456788888999999999999998888
Q ss_pred HHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchh
Q 010904 303 YTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISM 382 (497)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (497)
.+.......|.... +|++..+..++.....+.+++|+++.|++.||++.|+++..+.++..+.++...+.. ..
T Consensus 269 ~til~~~~~fg~~~----~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~---~~ 341 (438)
T COG2270 269 NTILAMGGVFGAAD----LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE---GE 341 (438)
T ss_pred HHHHHHHHHHHHHH----cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc---cc
Confidence 89999999999977 899999999999999999999999999999999999999888888887777666542 23
Q ss_pred HHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc--CchHHHHH
Q 010904 383 ITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFM 460 (497)
Q Consensus 383 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~ 460 (497)
.....+..+.|++.++.++..-++..+.+|+.+. ++.+|+++..+...+.+||.+.+.+.+. +-+..+..
T Consensus 342 ~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~--------~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~ 413 (438)
T COG2270 342 LDFWILGLLVGTSLGGAQASSRSYLARLVPKGKE--------GRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLS 413 (438)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccc--------cceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 3445556788999999999999999999998653 8999999999999999999999998887 66777777
Q ss_pred HHHHHHHHHHHHHHH
Q 010904 461 LIVSILFAGMFLIRI 475 (497)
Q Consensus 461 ~~~~~~~~~~~~~~~ 475 (497)
+.++.+++.+.....
T Consensus 414 i~vll~iGl~~L~~v 428 (438)
T COG2270 414 IIVLLLIGLLLLLRV 428 (438)
T ss_pred HHHHHHhhHhhEEee
Confidence 777777776655444
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.1e-19 Score=173.50 Aligned_cols=332 Identities=14% Similarity=0.108 Sum_probs=221.4
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccc----cCCch-hhHHHHHHHHHHHHHHhhhhh-hhhhHHHHHH
Q 010904 76 GWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDT----IDLRL-FLVFGMMGSGLFTIIFGLAYW-LSVHLLVYFV 149 (497)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~l~ 149 (497)
|++ ...+|.+..+.-+--++..++.|.++|| +|||| .++++.+..+++.+++-..+. ........++
T Consensus 41 Gl~-------~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~ 113 (460)
T PRK11462 41 GIP-------AGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAA 113 (460)
T ss_pred CCC-------HHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence 787 8899999999999999999999999995 78865 555677777777766544321 0112245566
Q ss_pred HHHHHhhhhhcccchhhhhhhhcccC-cccchhhHHHHHHHhhhHHHHHHHHhhhHhh--------cCcceeeehhhHHH
Q 010904 150 GVQIFCGLFQSIGWPCVVAVLGNWFG-KAKRGLIMGVWNSHTSIGNIIGSVLASGVLE--------FGWGWSFVLPGFLV 220 (497)
Q Consensus 150 ~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--------~gwr~~f~~~~~~~ 220 (497)
+.-++..++.......-.++.+|..+ ++||++..++...+..+|..+++.+...+.. .+|+....+.+++.
T Consensus 114 ~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~ 193 (460)
T PRK11462 114 ITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVA 193 (460)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence 77777788888888888899999997 6899999999999999998888776554432 25777777777766
Q ss_pred HHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHH
Q 010904 221 IFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKL 300 (497)
Q Consensus 221 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (497)
++...+.+...+|.++.... +.+.+..++..++||.++.+....++...
T Consensus 194 ~i~~~i~~~~~kE~~~~~~~-------------------------------~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~ 242 (460)
T PRK11462 194 FMMLAFCFFTTKERVEAPPT-------------------------------TTSMREDLRDIWQNDQWRIVGLLTIFNIL 242 (460)
T ss_pred HHHHHHHHhcceeccCCCcc-------------------------------CCCHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 66555555555553321100 01123346778889888777666555555
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCc
Q 010904 301 VAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSI 380 (497)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (497)
...........|.+.. .|. +...+.+.....++.+++.+++++++||+++|+..........+..+++.+ .+..
T Consensus 243 ~~~~~~~~~~y~~~y~----~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~-~~~~ 316 (460)
T PRK11462 243 AVCVRGGAMMYYVTWI----LGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFF-VPMQ 316 (460)
T ss_pred HHHHHHhHhhhhhhhh----cCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-hchh
Confidence 5544444455555544 343 334455667778888999999999999999988876554444443333332 2222
Q ss_pred hhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc
Q 010904 381 SMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR 452 (497)
Q Consensus 381 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 452 (497)
+....++..++.|++.+...+...+...+.. ++.+.....|.-|...+.......+|.++++.+.|.+.+.
T Consensus 317 ~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~-d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~ 387 (460)
T PRK11462 317 ASITMFVFIFVIGVLHQLVTPIQWVMMSDTV-DYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY 387 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455567766554444455544444 4334455556668878888888899999998888777655
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-17 Score=152.54 Aligned_cols=349 Identities=15% Similarity=0.108 Sum_probs=252.5
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccC-----Cch-hhHHHHHHHHHHHHHHhhhhhhhhh-------H--HH--HH
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTID-----LRL-FLVFGMMGSGLFTIIFGLAYWLSVH-------L--LV--YF 148 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~-~l~~~~~~~~i~~~~~~~~~~~~~~-------~--~~--~l 148 (497)
....+.+.+...+.. ...+.+|+.+|+.+ ||. .+..|.++...+..+.+++.+.-.. + .+ ..
T Consensus 14 A~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a 92 (403)
T PF03209_consen 14 AWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALA 92 (403)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHH
Confidence 666777777776654 46899999999988 665 4666677777777777765322112 2 22 33
Q ss_pred HHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh-hcC-cc--eeeehhhHHHHHHH
Q 010904 149 VGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-EFG-WG--WSFVLPGFLVIFVG 224 (497)
Q Consensus 149 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~g-wr--~~f~~~~~~~~~~~ 224 (497)
.+.-.+.|+|.+....+..++++|..|+++|+++.++.....-+|.+++..+.+.+. ++. -| ..+...+++.++..
T Consensus 93 ~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~ 172 (403)
T PF03209_consen 93 ALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLN 172 (403)
T ss_pred HHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHH
Confidence 445566899999999999999999999999999999999999999999999888877 333 12 12222333333333
Q ss_pred HHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHH
Q 010904 225 VFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYT 304 (497)
Q Consensus 225 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (497)
++..+ -.|.+.....+.. ++++......++++..+|+........++....++.
T Consensus 173 ~ia~w-g~E~r~~~~~~~~-------------------------~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~ 226 (403)
T PF03209_consen 173 LIALW-GQEPRRSRRAAAA-------------------------ERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFM 226 (403)
T ss_pred HHHHH-hcccCCcccccCC-------------------------CCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHh
Confidence 33222 2232222111000 112233456688889999999988888888888877
Q ss_pred HHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHH-hhhhhhHHHHHHHHHHHHHHHHHhhccCchhH
Q 010904 305 FLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISD-MIEARAVTSVAFLLLSIPALVLYRTYGSISMI 383 (497)
Q Consensus 305 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (497)
--..+=+|--++ +|+++.+...+....+.+.++|..+.|++.. |.++++...+++....+++.++.......+.+
T Consensus 227 QD~iLEPygg~V----fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~ 302 (403)
T PF03209_consen 227 QDVILEPYGGEV----FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPW 302 (403)
T ss_pred hHHHcCCchhHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 777888888888 8999999999999999999999999999777 56777777788888887777766655556778
Q ss_pred HHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-----------
Q 010904 384 TNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR----------- 452 (497)
Q Consensus 384 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~----------- 452 (497)
.+....+++|++.+.......+...+...+ ++.|..+|.-...+.++..++..+.|.+.|.
T Consensus 303 ~~~~~~~l~G~g~G~f~vgals~mM~lt~~--------~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~ 374 (403)
T PF03209_consen 303 LFRPGVFLLGLGNGLFTVGALSLMMDLTSA--------GRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPAL 374 (403)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCC--------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcch
Confidence 888899999999988887777777777765 3349999999999999999998888888775
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 010904 453 GWNSVFFMLIVSILFAGMFLI 473 (497)
Q Consensus 453 g~~~~~~~~~~~~~~~~~~~~ 473 (497)
+|..+|.+=++..+++..+..
T Consensus 375 aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 375 AYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555544443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-18 Score=161.62 Aligned_cols=396 Identities=14% Similarity=0.115 Sum_probs=249.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCccc-cccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcc
Q 010904 30 IFHQITALVITFFAYASFHASRKPPSI-VKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAG 108 (497)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (497)
++.+|+.+.++.+..++.......+.+ ..|++.+ + |++-+ .+..|++.++..++.+++++..|
T Consensus 29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~-l--------D~~A~-------~~ffG~viaa~slg~~i~~liF~ 92 (488)
T KOG2325|consen 29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQK-L--------DPTAT-------ATFFGLVIAASSLGHAIFSLIFG 92 (488)
T ss_pred cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhh-c--------CCCCC-------cchhhHHHHHHHHHHHhcchhhc
Confidence 445666666677777776666544433 3344433 2 12444 88899999999999999999999
Q ss_pred ccccccCC-chhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHH
Q 010904 109 HVGDTIDL-RLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWN 187 (497)
Q Consensus 109 ~l~dr~Gr-r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 187 (497)
+...|.+. |+-++.+.++..++.++.......+....+.++++|++.|+|.+.. ....+++++....++|.++++...
T Consensus 93 ~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~ 171 (488)
T KOG2325|consen 93 IWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATS 171 (488)
T ss_pred ccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhh
Confidence 99999997 8889999999999999984332233347899999999999997766 556899999998999999999999
Q ss_pred HHhhhHHHHHHHHhhhHhh---cCcc-----------eeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhc
Q 010904 188 SHTSIGNIIGSVLASGVLE---FGWG-----------WSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVE 253 (497)
Q Consensus 188 ~~~~~G~~~g~~~~~~l~~---~gwr-----------~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 253 (497)
.+..+|.++||.++..+.. .||. .+=|+.+++.++..+.+.++++|.++....++.+.+.
T Consensus 172 ~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~------ 245 (488)
T KOG2325|consen 172 GGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVE------ 245 (488)
T ss_pred hHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccch------
Confidence 9999999999998887763 2332 2446777888888788888888876654322211110
Q ss_pred cCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhH---
Q 010904 254 NGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGI--- 330 (497)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~--- 330 (497)
+++.+.+ ..+..+.++ +..+.+.+..+...+......+..+.+.... ++++..++-.
T Consensus 246 -~~~~~~~---------~~~~~~~d~------~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~----y~w~~~~av~~~g 305 (488)
T KOG2325|consen 246 -EEKSDIE---------KVKKPKLDW------VAVLVCIFLRFVVNFIATTIETLSSALTMVM----YGWTGSEAVLYNG 305 (488)
T ss_pred -hhccchh---------hhccCChhH------HHHHHHHHHHHHHHHHHHHHHhccchHHHHH----hccccchHHHhhh
Confidence 0000000 000001011 1123333444444444444455556666665 6776655543
Q ss_pred -HHhhhhhhhhhhhhhhHHhH-HhhhhhhHHHHHHHHHHHHHHHHHhhccC----------------------------c
Q 010904 331 -LSTIFDIGGVFGGILAGLIS-DMIEARAVTSVAFLLLSIPALVLYRTYGS----------------------------I 380 (497)
Q Consensus 331 -~~~~~~~~~~~~~~~~g~l~-dr~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~ 380 (497)
..+..++..+.-.+...... .++.+|+.+..+++.......+....... .
T Consensus 306 i~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v 385 (488)
T KOG2325|consen 306 ITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAV 385 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCccc
Confidence 44444444443333333333 23344555555544444333332211100 0
Q ss_pred hhHH-HHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHH
Q 010904 381 SMIT-NIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVF 458 (497)
Q Consensus 381 ~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~ 458 (497)
+.+. .+...+++|...-.......+..++.+.|. +.++..|++......+..++|.+....... |++..+
T Consensus 386 ~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~--------~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~ 457 (488)
T KOG2325|consen 386 PLILYLISFIVVFGIAFPFISTALDTLYSKILGPR--------DQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVW 457 (488)
T ss_pred ChhhheeehhheeccccccccchHHHHHHHHhCCc--------cccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHH
Confidence 0111 122234455555555666778888888874 449999999999999999999888777777 888777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010904 459 FMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~ 476 (497)
.+..+..++...+.....
T Consensus 458 ~~~~~~~l~~~~l~~~~~ 475 (488)
T KOG2325|consen 458 IILLCLLLVVAALWIVFL 475 (488)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777666666555544443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-21 Score=190.55 Aligned_cols=382 Identities=17% Similarity=0.213 Sum_probs=3.0
Q ss_pred HHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhh
Q 010904 41 FFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFL 120 (497)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l 120 (497)
++..++..+........+..+.+.| +++ .++.|++.+.+-++..+..++..++.+|..|-|.+
T Consensus 9 ~~~~~~q~~~~g~~~~~lttiErRF----------~l~-------S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwi 71 (539)
T PF03137_consen 9 CLLGLFQMMVSGYVNSSLTTIERRF----------GLS-------SSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWI 71 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccee
Confidence 3334444555556677888999999 888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhh---------------------------------------------hhhHHHHHHHHHHHh
Q 010904 121 VFGMMGSGLFTIIFGLAYWL---------------------------------------------SVHLLVYFVGVQIFC 155 (497)
Q Consensus 121 ~~~~~~~~i~~~~~~~~~~~---------------------------------------------~~~~~~~l~~~r~l~ 155 (497)
-+|.++.+++++++++--+. ...-++.+++++++.
T Consensus 72 g~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~ 151 (539)
T PF03137_consen 72 GIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLI 151 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHH
Confidence 99999999999998862100 001246789999999
Q ss_pred hhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh----------------------cC-ccee
Q 010904 156 GLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE----------------------FG-WGWS 212 (497)
Q Consensus 156 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----------------------~g-wr~~ 212 (497)
|+|....++.+.+|+-|..++++-+..+|++.....+|.++|-++++.+.+ .| |..-
T Consensus 152 GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLG 231 (539)
T PF03137_consen 152 GIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLG 231 (539)
T ss_dssp SSS-----------------------------------------------------------------------------
T ss_pred hccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987652 12 7777
Q ss_pred eehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccc-cccccccccCCCCchhhhhHHHHhhCCchHHH
Q 010904 213 FVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVE-NEEVGLLESGSSGSLQAIGFLEAWKLPRVAPF 291 (497)
Q Consensus 213 f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (497)
|++.+++.++.++..+++-++-|+....++..+..+ .......+.+ ++........+..+.-+...+++++||.+...
T Consensus 232 fli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~ 310 (539)
T PF03137_consen 232 FLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSE-RKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCL 310 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhh-cchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHH
Confidence 888888888877766665444444411111110000 0000000000 00000000111223345667889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhh-hhhhhhhhhHHhHHhhhh--hhHHHHHHHHHHH
Q 010904 292 AFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDI-GGVFGGILAGLISDMIEA--RAVTSVAFLLLSI 368 (497)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~--~~~~~~~~~~~~~ 368 (497)
.+..........++.++.|-|++.. ++.++.++.++.....+ +.++|.+++|++.+|++- |+.+....+...+
T Consensus 311 ~la~~~~~~~~~G~~tF~pKylE~Q----F~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v 386 (539)
T PF03137_consen 311 ILAGVFESFIVSGFATFLPKYLESQ----FGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIV 386 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----hCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 89999999998876655 677888999999999843 3333222222222
Q ss_pred HHHH---HHhhc-----------cC-------------------------------------chhHHHHHHHHHHhhhcc
Q 010904 369 PALV---LYRTY-----------GS-------------------------------------ISMITNIPLMFLSGLLVN 397 (497)
Q Consensus 369 ~~~~---~~~~~-----------~~-------------------------------------~~~~~~~~~~~~~g~~~~ 397 (497)
..+. .++.. +. .....+.+.+++.-+..+
T Consensus 387 ~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~ 466 (539)
T PF03137_consen 387 SVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTF 466 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHH
Confidence 2211 11100 00 001223333344445555
Q ss_pred CcchhHHHHHHhhcccccccccccchhHHHHHHHhhhh-hhhhhhhhcccceeecc
Q 010904 398 GPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTG-SVGAALGPLLAGYISTR 452 (497)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~~~~~~~g~l~~~ 452 (497)
....+......+.+++++ ++.+.|+...+. -+|.+-+|.+.|.+.|.
T Consensus 467 ~~~~p~~~i~LR~V~~~~--------rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 467 MSQVPSTLITLRCVPPEQ--------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp --------------------------------------------------------
T ss_pred hcccchheeeeccCChhh--------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 566666677778888754 389999988665 56889999999999997
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-17 Score=164.02 Aligned_cols=293 Identities=18% Similarity=0.208 Sum_probs=224.2
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccccc
Q 010904 35 TALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTI 114 (497)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~ 114 (497)
..++++.+..+...+....+...+..+.+.| +++ .++.|++.+.+-++..+...+..++.-|.
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF----------~i~-------Ss~sG~I~s~~dig~~l~i~fVsYfG~r~ 159 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRF----------KIS-------SSQSGLIASSYDIGNLLLIIFVSYFGSRG 159 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhc----------CCC-------CCcceeEeeecccchhhhhHhHHHhcccc
Confidence 3445556666666666666777888899988 888 99999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhh-----------h-------h---------------------------hhh--HHHH
Q 010904 115 DLRLFLVFGMMGSGLFTIIFGLAY-----------W-------L---------------------------SVH--LLVY 147 (497)
Q Consensus 115 Grr~~l~~~~~~~~i~~~~~~~~~-----------~-------~---------------------------~~~--~~~~ 147 (497)
.|-+.+-+|.++++++++++++-- . . ..+ -+..
T Consensus 160 HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 239 (735)
T KOG3626|consen 160 HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL 239 (735)
T ss_pred CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence 999999999999999999998720 0 0 001 1236
Q ss_pred HHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh----c---------------C
Q 010904 148 FVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE----F---------------G 208 (497)
Q Consensus 148 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----~---------------g 208 (497)
++++.++.|+|....++.+.+|+-|...+++-+..+|+......+|.++|-++++++.+ . |
T Consensus 240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIG 319 (735)
T KOG3626|consen 240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIG 319 (735)
T ss_pred HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhh
Confidence 78899999999999999999999999999999999999999999999999999999864 1 2
Q ss_pred -cceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCc
Q 010904 209 -WGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPR 287 (497)
Q Consensus 209 -wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (497)
|..-|++.+.+.++.++..+++-++.|+....+..+ +. +..+.+.+.. .......+..+.-+...+++++||.
T Consensus 320 AWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~-~~----~~~k~~~~~~-~~~~~~~~~ikdfp~s~~~ll~N~i 393 (735)
T KOG3626|consen 320 AWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRAR-DL----HVLKTESGGA-KSDKTFGKKIKDFPKSIKRLLSNPI 393 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhh-hh----cccccccccc-cCCcchhhhHHHHHHHHHHHhcCch
Confidence 666788888888888776666544444433221111 10 0001110000 0000001112345677889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhh-hhhhhhhhhHHhHHhhh
Q 010904 288 VAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDI-GGVFGGILAGLISDMIE 354 (497)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~ 354 (497)
+....+...+......++.+++|-|++++ +|.++..+..+.....+ +..+|.+++|++.+|+.
T Consensus 394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Q----fg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfk 457 (735)
T KOG3626|consen 394 FMLVVLASVIESLAITGYITFLPKYLETQ----FGISASLANILTGSIGVPAAAVGIFLGGLIIKKFK 457 (735)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhHHHHHHH----cCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeec
Confidence 99999999999999999999999999999 99999999999876665 44567789999999974
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-15 Score=142.03 Aligned_cols=376 Identities=14% Similarity=0.081 Sum_probs=236.4
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccc-cCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccch
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDT-IDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWP 164 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 164 (497)
+++..-+.++|.--.-+..+++|+++|| +|+|+.+++|.++..+|-++.+.+. ..+...+.++-.+.++|.|..-+
T Consensus 60 ~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~---~~~~~gl~i~L~~I~iG~Gl~K~ 136 (498)
T COG3104 60 ETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS---VSGPGGLYIGLALIIVGTGLFKP 136 (498)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc---cccccHHHHHHHHHHhccccccc
Confidence 7777777777777777888999999998 7999999999999999999999860 02688899999999999999999
Q ss_pred hhhhhhhcccCcc--cchhhHHHHHHHhhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCC
Q 010904 165 CVVAVLGNWFGKA--KRGLIMGVWNSHTSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFE 241 (497)
Q Consensus 165 ~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 241 (497)
...++++|.+|++ +|-..+++++++.++|+.++|++.+++. ++||+..|.+.++-..+ +++.+...+..-......
T Consensus 137 NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~-gl~~f~~~~r~~~~~~~~ 215 (498)
T COG3104 137 NISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMII-GLVIFLLGRRHVKGIGGV 215 (498)
T ss_pred cHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH-HHHHHHHccchhcCCCCC
Confidence 9999999999863 3778899999999999999999999999 68999999987765555 455555555322211111
Q ss_pred CChh----hh-h---------hhhhc-cCCccccccccccc------c----CCCCchhh--hhHHHHhhCCchHHHHHH
Q 010904 242 LPGK----EV-E---------LMNVE-NGDKVENEEVGLLE------S----GSSGSLQA--IGFLEAWKLPRVAPFAFC 294 (497)
Q Consensus 242 ~~~~----~~-~---------~~~~~-~~~~~~~~~~~~~~------~----~~~~~~~~--~~~~~~~~~~~~~~~~~~ 294 (497)
++.. .. . ..... ......+....... . .+....++ ...+++ .....+.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~---~~~~~Lfl~ 292 (498)
T COG3104 216 PDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRL---LAAIPLFLF 292 (498)
T ss_pred CCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHH---HHHHHHHHH
Confidence 1110 00 0 00000 00000000000000 0 00000000 000111 112222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc-cCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhh-------hHHHHHHHHH
Q 010904 295 LFFSKLVAYTFLYWLPFYIRHTAVAG-VHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEAR-------AVTSVAFLLL 366 (497)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~-------~~~~~~~~~~ 366 (497)
..+.+..+....+-+..|..+...++ +|++ ....+..+...+..++.+++..++-.+.+++ ..+.++..++
T Consensus 293 ~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~ 371 (498)
T COG3104 293 AVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILA 371 (498)
T ss_pred HHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHH
Confidence 33333333344455555555542222 2222 2345666777777788888888877774433 2345666666
Q ss_pred HHHHHHHHhh-------ccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhh
Q 010904 367 SIPALVLYRT-------YGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGA 439 (497)
Q Consensus 367 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 439 (497)
+.+.+++... ....+.++.+...++..++--...+...+.+.+..|+ +-.+.++++.......+.
T Consensus 372 g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~--------~~~s~~ma~wfLt~a~~~ 443 (498)
T COG3104 372 GLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPP--------ALKSFIMAMWFLTVAAGQ 443 (498)
T ss_pred HHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChH--------HHHHHHHHHHHHHHHHHH
Confidence 6666665443 2235678888888888998888889999999999886 334777777666666666
Q ss_pred hhhhccccee------ecc-CchHHHHHHHHHHHHHHHHHHHHHh
Q 010904 440 ALGPLLAGYI------STR-GWNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 440 ~~~~~~~g~l------~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
.++..+.+.- .+. .....|+.++.+.++..+......+
T Consensus 444 ~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 444 TLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 6666665531 111 5667777777777766666555443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9e-15 Score=141.31 Aligned_cols=366 Identities=16% Similarity=0.151 Sum_probs=245.0
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccccc
Q 010904 35 TALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTI 114 (497)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~ 114 (497)
-+....++-.+..++.........+.....+ +-+ .+.. +....+.-.....+...+.++..|.++||+
T Consensus 22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~----------~~~-~~~~-~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~ 89 (463)
T KOG2816|consen 22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTF----------GDD-YQLE-NGLLLGVKQVTAGLLTLISSPLIGALSDRY 89 (463)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhhhhhccc----------ccC-ccch-hhhhhhHHHHhhHHHHHHHHhhhHHhhhhh
Confidence 3445555556666665555555556655554 111 0000 011122222233667788999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhh--hhcccchhhhhhhhcccCcccchhhHHHHHHHhhh
Q 010904 115 DLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGL--FQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSI 192 (497)
Q Consensus 115 Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~--~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 192 (497)
|||..+....+...+..++..+. .+|.++ +.|+ +.+.......++++|....++|....|+....+..
T Consensus 90 grk~~L~~~~~~~~l~~~~~~~~------~~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~ 159 (463)
T KOG2816|consen 90 GRKVVLLLPLFGTILPALCLLFQ------GYWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGA 159 (463)
T ss_pred hhhhhHHHHHHHHHHhHHHHHHH------HHHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999888884 444444 4444 33446677889999999999999999999999999
Q ss_pred HHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCC
Q 010904 193 GNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSS 271 (497)
Q Consensus 193 G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (497)
+..++|.+++.+.+ .|.-.+|.+..+..++..+..++++||+-.+......... +...+.... ..
T Consensus 160 ~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~-----~~~~~~~~~---------~~ 225 (463)
T KOG2816|consen 160 GLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLR-----ELTPGSLDS---------SH 225 (463)
T ss_pred HHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccc-----ccCCCcccc---------hh
Confidence 99999999999984 6888899999998888888888888887554332210000 000000000 00
Q ss_pred CchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhH-Hh
Q 010904 272 GSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLY-WLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAG-LI 349 (497)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g-~l 349 (497)
.........+.-.+|..+.+++..++.......-.. .++.|+... ++++..+.+.+.+...+...++..+.. .+
T Consensus 226 ~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~----f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l 301 (463)
T KOG2816|consen 226 VADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK----FGWNKKEFSDLLSLVSILGIISQLLLLPLL 301 (463)
T ss_pred hhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeee----cCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111122222345556655555555444433222 446677776 899999999888888888888887666 67
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHH
Q 010904 350 SDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTA 429 (497)
Q Consensus 350 ~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 429 (497)
...++.++.+..+...-.+..+...+. .+.|..+... ..........+...+..+..+.++++ |++.+
T Consensus 302 ~~~l~~~~~i~lGl~~~~~~~~~~af~---~~~w~~~~~~-v~~~~~~~~~pa~~s~~s~~v~~~e~--------g~v~~ 369 (463)
T KOG2816|consen 302 SSILGEKRLISLGLLSEFLQLLLFAFA---TETWMMFAAG-VVVALAGIVFPAIRAFASILVSPEEQ--------GKVFG 369 (463)
T ss_pred HHHHhhhhHhhHHHHHHHHHHHHHHHh---ccchhhhHHH-HHHHhhcchhHHHHhHHHhhcccccc--------cchhh
Confidence 777888887777777777777666653 3333433333 33344556678888888888887654 99999
Q ss_pred HHhhhhhhhhhhhhcccceeecc
Q 010904 430 IIDGTGSVGAALGPLLAGYISTR 452 (497)
Q Consensus 430 ~~~~~~~~g~~~~~~~~g~l~~~ 452 (497)
+...+..+...++|.+.+.+...
T Consensus 370 ~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 370 IISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999999999999998887654
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-13 Score=124.86 Aligned_cols=266 Identities=13% Similarity=0.093 Sum_probs=179.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhh
Q 010904 27 KTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYF 106 (497)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~ 106 (497)
+..++.|+.-+..-.++...+.+.. +... .+-+++ +.+ +.|++.+....+...++...+
T Consensus 30 ~~f~~Fqr~yl~vY~La~~aDWLQG---pY~Y-~LY~~y----------g~~-------~~qIa~Lf~~Gf~Ss~i~g~~ 88 (354)
T PF05631_consen 30 PAFRRFQRKYLLVYLLAMAADWLQG---PYLY-ALYESY----------GFS-------EHQIAILFVAGFASSAIFGTF 88 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhc---chhH-HHHHHc----------CCC-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666542 1222 223455 777 999999999999999999999
Q ss_pred ccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhh-hccc----Ccccchh
Q 010904 107 AGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVL-GNWF----GKAKRGL 181 (497)
Q Consensus 107 ~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i-~~~~----~~~~r~~ 181 (497)
.|.++||+|||+..++.+++.+++++..-. ++++.++++|++.|++....+.+-.+++ .|.- |++..+.
T Consensus 89 ~G~laD~~Grk~~cl~~cily~~scl~k~~------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~ 162 (354)
T PF05631_consen 89 VGSLADRYGRKKACLLFCILYSLSCLTKHS------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSD 162 (354)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHhc------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 999999999999999999999999976655 8999999999999999999888777664 4543 2222233
Q ss_pred hHHHHH-HHhhhHHHHHHHHhhhHhh-c--CcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCc
Q 010904 182 IMGVWN-SHTSIGNIIGSVLASGVLE-F--GWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDK 257 (497)
Q Consensus 182 ~~~~~~-~~~~~G~~~g~~~~~~l~~-~--gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 257 (497)
.++... ..+++-.+++.+++-.+.+ . |-..+|.....+.++.++++...-+|.........+.
T Consensus 163 tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~------------- 229 (354)
T PF05631_consen 163 TFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSL------------- 229 (354)
T ss_pred HHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccch-------------
Confidence 333333 2233334444555555553 3 4478888887777776666655555544322111110
Q ss_pred cccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcccCCCcchhhHHHhhhh
Q 010904 258 VENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLY-WLPFYIRHTAVAGVHLSHKTAGILSTIFD 336 (497)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 336 (497)
.+.....++.+.+||+++.+.+...+.-...+.+.. |.|..-.+ + ...-.|++++.+.
T Consensus 230 --------------~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~------~-~~~P~GlIFssFM 288 (354)
T PF05631_consen 230 --------------SGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPD------D-EELPLGLIFSSFM 288 (354)
T ss_pred --------------HHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCC------C-CCCCchHHHHHHH
Confidence 112234467788899999999988888777776654 55544421 1 2234789999999
Q ss_pred hhhhhhhhhhHHhHHhh
Q 010904 337 IGGVFGGILAGLISDMI 353 (497)
Q Consensus 337 ~~~~~~~~~~g~l~dr~ 353 (497)
++.++|+.+..++..+.
T Consensus 289 ~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 289 VAMMLGSSLFSRLLSKS 305 (354)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 99999998887655543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-15 Score=124.70 Aligned_cols=137 Identities=16% Similarity=0.312 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhh
Q 010904 92 LDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLG 171 (497)
Q Consensus 92 ~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 171 (497)
+.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+. ++++.+.+.+++.|++.+...+....++.
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-----SNITVLIIARFLQGFGAAFALVAGAALIA 77 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4456778889999999999999999999999999999999888887 89999999999999999999999999999
Q ss_pred cccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhheec
Q 010904 172 NWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFLVV 233 (497)
Q Consensus 172 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~ 233 (497)
|.+|+++|++..++......+|..+++.+++.+.+ .+|++.|++.+++.++..+..++..||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999998884 689999999888877776666665554
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=140.37 Aligned_cols=353 Identities=16% Similarity=0.140 Sum_probs=223.6
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccC-----CchhhHHHHHHHHHH
Q 010904 56 IVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTID-----LRLFLVFGMMGSGLF 130 (497)
Q Consensus 56 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~~~i~ 130 (497)
...|.+.+++ |++ +++.....+...+...+ .++.|.++|.+- ||+.++++.++.+++
T Consensus 11 ~~~~~l~~~l----------~ls-------~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~ 72 (433)
T PF03092_consen 11 AIYPFLKDDL----------GLS-------PAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVS 72 (433)
T ss_pred HHHHHHHHHc----------CCC-------HHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHH
Confidence 3457788888 888 88888888888777655 577999999763 556677777777666
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccC--cccchhhHHHHHHHhhhHHHHHHHHhhhHh-hc
Q 010904 131 TIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFG--KAKRGLIMGVWNSHTSIGNIIGSVLASGVL-EF 207 (497)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~ 207 (497)
.+..+..+. ...+.....++-++..+|.+....++-+++.|... +++||...+.......+|.+++..++|.+. ..
T Consensus 73 ~~~~~~~~~-~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~ 151 (433)
T PF03092_consen 73 ALVLALLPA-SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF 151 (433)
T ss_pred HHHHHhccc-ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 665555311 11456667777788889999999999999999983 344788888999999999999999999988 47
Q ss_pred CcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCc
Q 010904 208 GWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPR 287 (497)
Q Consensus 208 gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (497)
++|+.|.+.+++..+..+...+..+|.++....+..... +++.+.. ....++.....++.++.|.
T Consensus 152 ~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~--------~~~~~~~-------~~~~~~~~~~l~~~~~~~~ 216 (433)
T PF03092_consen 152 GPQGVFLISAALPLLMLIVALFLLEERKVRPADEVFSFG--------KEEVPCL-------FGSFREQLSELWRALQQRA 216 (433)
T ss_pred CCeEEehHHHHHHHHHHHHHHHhhhhccccccchhhccc--------ccccchh-------hHHHHHHHHHHHHHHhhhH
Confidence 899999999888887766666666552221111000000 0000000 0001223455677788888
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHH-HHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHH
Q 010904 288 VAPFAF-CLFFSKLVAYTFLYWLPFYI-RHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLL 365 (497)
Q Consensus 288 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 365 (497)
+|...+ ..++.......... ...|. .+. .++.++++...+.+..+..++.++|..+......+..-|+++....++
T Consensus 217 i~~~~~~~~~~~~~~~~~~~a-~~fy~~~~~-~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~ 294 (433)
T PF03092_consen 217 IWQPILFFIFFFNLPPSISSA-SSFYFQTDA-LGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLV 294 (433)
T ss_pred HHHHHHHHHHHHHhccCCCCc-cEEEEEecc-ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 887666 22222221111000 01111 111 012358888888888888888888888877776677777777666655
Q ss_pred HHHHHHHHHhhccC-------chhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhh
Q 010904 366 LSIPALVLYRTYGS-------ISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVG 438 (497)
Q Consensus 366 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 438 (497)
..+..+.-...... ++.+....--++..+.....+-+....+++.+|+..+ |+..++...+.++|
T Consensus 295 ~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~E--------gt~yall~s~~Nlg 366 (433)
T PF03092_consen 295 SVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSE--------GTVYALLASFSNLG 366 (433)
T ss_pred HHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCch--------HHHHHHHHHHHHHH
Confidence 55443332111100 1112122222334444444555667788888887543 89999999999998
Q ss_pred hhhhhcccceeecc
Q 010904 439 AALGPLLAGYISTR 452 (497)
Q Consensus 439 ~~~~~~~~g~l~~~ 452 (497)
..++..+...+.+.
T Consensus 367 ~~~s~~lg~~l~~~ 380 (433)
T PF03092_consen 367 SSVSSTLGAFLMEL 380 (433)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777666554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=133.93 Aligned_cols=174 Identities=13% Similarity=0.142 Sum_probs=137.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHH
Q 010904 286 PRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLL 365 (497)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 365 (497)
|.++.+.+..++.....+....++|.|+++. +|++..+.|+..+...++.++++++.|+++||+|+|+.+..+...
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~----~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~ 82 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQ----YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITA 82 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHH
Confidence 4467777888888888888899999999887 899999999999999999999999999999999999998888777
Q ss_pred HHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcc
Q 010904 366 LSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLL 445 (497)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 445 (497)
..++.+.+.+. ++.+..+....+.|...+...+....+..+..++ ++++++.|+.+...++|..++|.+
T Consensus 83 ~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~lg~~igp~l 151 (395)
T PRK10054 83 FASGFIAIPLV---NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSS--------TSKTKIFSLNYTMLNIGWTVGPPL 151 (395)
T ss_pred HHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666555442 3444444444455555555556666777777765 445999999999999999999999
Q ss_pred cceeeccCchHHHHHHHHHHHHHHHHHHH
Q 010904 446 AGYISTRGWNSVFFMLIVSILFAGMFLIR 474 (497)
Q Consensus 446 ~g~l~~~g~~~~~~~~~~~~~~~~~~~~~ 474 (497)
.+++.+.+|+..|.+.+++.+++.+....
T Consensus 152 ~~~l~~~g~~~~f~~~~~~~~i~~i~~~~ 180 (395)
T PRK10054 152 GTLLVMQSINLPFWLAAICSAFPLVFIQI 180 (395)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 99887668999999888777776554443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.53 E-value=8e-12 Score=117.07 Aligned_cols=373 Identities=13% Similarity=0.118 Sum_probs=242.4
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccCCC-CCCCCCCCCCCCCCCCCCCCCCccch-hhHHHHHHHHHHHHhhcccccc
Q 010904 35 TALVITFFAYASFHASRKPPSIVKSVLGPT-FDGSNLRSNDPGWAPFNGPDGTHRLG-ELDLAFLTSYSVGMYFAGHVGD 112 (497)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~s~~~~~~~~~~~~~g~l~d 112 (497)
..+.+|.++++... +..-+.+.|++.+. . |++ ..|+. -+.-...-.+....++...+.|
T Consensus 6 ~~~llc~~gf~~~f--rPsEPfl~~yL~~~~k----------n~T-------~~qv~~~i~Pv~tYSyl~~l~~vflltd 66 (412)
T PF01770_consen 6 ITLLLCLFGFFKEF--RPSEPFLTPYLTGPDK----------NFT-------EEQVNNEIYPVWTYSYLAFLLPVFLLTD 66 (412)
T ss_pred HHHHHHHHHHHHhc--CCCCccchHHHcCCcc----------CCC-------HHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34455555555543 66666777777764 4 666 55553 5666777778888899999999
Q ss_pred ccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhh
Q 010904 113 TIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSI 192 (497)
Q Consensus 113 r~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 192 (497)
..+.|++++++.+...+..++.-+. ++...+-+..++.|++.+. ..+-.+++-...|+++-.++.+...++.-+
T Consensus 67 ~l~Ykpviil~~~~~i~t~~lll~~-----~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~ 140 (412)
T PF01770_consen 67 YLRYKPVIILQALSYIITWLLLLFG-----TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLV 140 (412)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH-----CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999898 9999999999999998877 477789999999999999999999999999
Q ss_pred HHHHHHHHhhhHhhcC---cceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCC---cccccc-ccc
Q 010904 193 GNIIGSVLASGVLEFG---WGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGD---KVENEE-VGL 265 (497)
Q Consensus 193 G~~~g~~~~~~l~~~g---wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~ 265 (497)
|..++.++|..+...+ .+...++.. .+...++++.+++|..++..-.++...+.....+.+.+ +.+++. +..
T Consensus 141 g~~~s~~lgQllvs~~~~sy~~L~~isl-~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (412)
T PF01770_consen 141 GRFISSLLGQLLVSFGGVSYFQLNYISL-ASVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTE 219 (412)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccc
Confidence 9999999999888644 344444433 33444456667788765543222221110000000000 000000 000
Q ss_pred cccCCCCc-------hhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhh
Q 010904 266 LESGSSGS-------LQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIG 338 (497)
Q Consensus 266 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~ 338 (497)
.+.+.... .-...+++..++|.++.-.+.+.+...+++....+.-...++.. ..+-.....|.+-+...+.
T Consensus 220 ~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~--~~~~~~vYNG~VeA~~tll 297 (412)
T PF01770_consen 220 KSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVP--PSDNESVYNGAVEAASTLL 297 (412)
T ss_pred cCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcC--CCCCCcccchHHHHHHHHH
Confidence 00001111 11234555667888877777777777777666666655555530 0244455678888888888
Q ss_pred hhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccc
Q 010904 339 GVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIK 418 (497)
Q Consensus 339 ~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (497)
+.++.+..|++..++.+...+.++......+.+++.. ....+.|..++..++++.......+.....++.....
T Consensus 298 gA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm-~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~----- 371 (412)
T PF01770_consen 298 GAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLM-SFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSE----- 371 (412)
T ss_pred HHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 8889999999866666655444443333333333222 2246778888888888877777766666666666653
Q ss_pred cccchhHHHHHHHhhhhhhhhhhhhc
Q 010904 419 GNSRALATVTAIIDGTGSVGAALGPL 444 (497)
Q Consensus 419 ~~~~~~g~~~g~~~~~~~~g~~~~~~ 444 (497)
+..|.+.|+++++..+-..+-..
T Consensus 372 ---e~yaLVFGiNtf~Al~LQtilT~ 394 (412)
T PF01770_consen 372 ---ERYALVFGINTFVALVLQTILTL 394 (412)
T ss_pred ---cceeeeeeeHHHHHHHHHHheEE
Confidence 44477888777766555544443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=138.61 Aligned_cols=152 Identities=9% Similarity=-0.024 Sum_probs=113.0
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+.+... ...++...+++++++.|++.+.....
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~g~ 362 (490)
T PRK10642 285 EDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFIL--INSNVIGLIFAGLLMLAVILNCFTGV 362 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778888889999999999999999999999888876554433321111 00145777888999999887777777
Q ss_pred hhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh--cCcceeeehhhHHHHHHHHHHHhheecCCcCCCC
Q 010904 166 VVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE--FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGF 240 (497)
Q Consensus 166 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~ 240 (497)
...++.|.+|++.|++++++......++..++|.+.+++.+ .+|+.++++..+++++..+ ..+++||+|++...
T Consensus 363 ~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~-~~~~~pes~~~~~~ 438 (490)
T PRK10642 363 MASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI-TGVTMKETANRPLK 438 (490)
T ss_pred HHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HHHHhccccCCCCC
Confidence 78888999999999999997554455666788888888774 3478777776666666544 45567999887543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.4e-13 Score=131.35 Aligned_cols=184 Identities=13% Similarity=0.118 Sum_probs=141.7
Q ss_pred HHHHhhCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHh-hhhh
Q 010904 279 FLEAWKLPR-VAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDM-IEAR 356 (497)
Q Consensus 279 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~ 356 (497)
..+.+++|+ ++..+...++..+.++....+++.|+++. +|++..+++..............+++|+++|| +|||
T Consensus 13 ~~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~----lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r 88 (500)
T PRK09584 13 SLNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQ----LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK 88 (500)
T ss_pred ChhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 345667775 77888888888899999999999999887 89999988887777665555556789999999 5999
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhh
Q 010904 357 AVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGS 436 (497)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 436 (497)
+.+..+..+.+++..++.+. ..+.+...+...+.|++.+...+...+...+.+|+++ +.++.+.++.+...+
T Consensus 89 ~~~~~g~~~~~ig~~l~~~~--~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~------~~~~~~~~~~~~~~~ 160 (500)
T PRK09584 89 RVIMLGAIVLAIGYALVAWS--GHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD------PRLDGAFTMYYMSIN 160 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc------hhhhhcchHHHHHHH
Confidence 99999988888776665542 1233344455667788888777787888888887543 233557888889999
Q ss_pred hhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHH
Q 010904 437 VGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIR 474 (497)
Q Consensus 437 ~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~ 474 (497)
+|..++|.+.|++.+. ||+..|.+.++..+++.+....
T Consensus 161 iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~ 199 (500)
T PRK09584 161 IGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAF 199 (500)
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 9999999877666665544433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=128.85 Aligned_cols=170 Identities=20% Similarity=0.274 Sum_probs=136.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHH
Q 010904 288 VAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLS 367 (497)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 367 (497)
++...+..++.+.....+..++|.+.++ +|++..+.+++.+...++..+++++.|++.||+|+|+.+..+..+.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 25 LITMYLGYALFYFTRKSFNAAMPEMLAD-----LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHHhhHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 3344455555555555677788888877 69999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccc
Q 010904 368 IPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAG 447 (497)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g 447 (497)
++.++.... .+.+...+..++.|++.+..++.....+.+.+++ +++++++|+.+....+|..++|.+.+
T Consensus 100 ~~~~~~~~~---~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~--------~~rg~~~~~~~~~~~~g~~~~~~~~~ 168 (434)
T PRK11663 100 IINILFGFS---SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR--------TERGGWWAIWNTAHNVGGALIPLVVG 168 (434)
T ss_pred HHHHHHHHH---hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777665542 4556666666677888888888888888888876 44599999999999999999999999
Q ss_pred eeecc-CchHHHHHHHHHHHHHHHHHH
Q 010904 448 YISTR-GWNSVFFMLIVSILFAGMFLI 473 (497)
Q Consensus 448 ~l~~~-g~~~~~~~~~~~~~~~~~~~~ 473 (497)
++.+. +|+..|.+.+++.++..+...
T Consensus 169 ~l~~~~gw~~~f~~~~i~~~~~~~~~~ 195 (434)
T PRK11663 169 AIALHYGWRYGMMIAGIIAIVVGLFLC 195 (434)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 98887 999999888776665544433
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=127.62 Aligned_cols=176 Identities=15% Similarity=0.165 Sum_probs=136.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhh-hhhhHHHHHHH
Q 010904 286 PRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMI-EARAVTSVAFL 364 (497)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~ 364 (497)
+.++..+.......+.++++..++|.|+++. +|++..+++.+...+.....++.+++|+++||+ |||+.+..+..
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~----lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~i 84 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQ----LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGAL 84 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 3456666777777888999999999999987 899999999999999999999999999999999 99999999988
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhc
Q 010904 365 LLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPL 444 (497)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 444 (497)
+..++.+++... ..+.......+.+..++.+...+...+.+.+.+|+++ +.|.++.++.+...++|+.++|.
T Consensus 85 l~~lg~lll~~~--~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~------~~R~sgf~i~Y~~~nlG~~iap~ 156 (493)
T PRK15462 85 LMAIGHVVLGAS--EIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTD------PRRDGGFSLMYAAGNVGSIIAPI 156 (493)
T ss_pred HHHHHHHHHHHh--hcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCC------ccccceehHHHHHHHHHHHHHHH
Confidence 888876655431 1111223333334445555555667788888887642 23477899999999999999999
Q ss_pred ccceeecc-CchHHHHHHHHHHHHHHHHHH
Q 010904 445 LAGYISTR-GWNSVFFMLIVSILFAGMFLI 473 (497)
Q Consensus 445 ~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 473 (497)
+.|++.+. ||+..|...++..+++.+...
T Consensus 157 l~g~L~~~~Gw~~~F~iaaigm~l~li~~~ 186 (493)
T PRK15462 157 ACGYAQEEYSWAMGFGLAAVGMIAGLVIFL 186 (493)
T ss_pred HHHHHHhhhChHHHHHHHHHHHHHHHHHHH
Confidence 99999877 999999987766655555443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-13 Score=133.17 Aligned_cols=149 Identities=10% Similarity=0.072 Sum_probs=128.1
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
..+.+...+...++..++.++.|++.||+|||+++.++.++.+++..+..... ....+++.+++.+++.|++.+...+.
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~-~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD-PEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46779999999999999999999999999999999999999988876666530 00123567788899999999988899
Q ss_pred hhhhhhcccCcccchhhHHHHH-HHhhhHHHHHHHHhhhHhh-------cCcceeeehhhHHHHHHHHHHHhheecCC
Q 010904 166 VVAVLGNWFGKAKRGLIMGVWN-SHTSIGNIIGSVLASGVLE-------FGWGWSFVLPGFLVIFVGVFVFLFLVVRP 235 (497)
Q Consensus 166 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~-------~gwr~~f~~~~~~~~~~~~~~~~~~~~~p 235 (497)
...++.|++|+++|++++|+.+ ...++|..+||+++|.+.+ +||+..|.+.+++.++.+++.++++||+.
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 8999999999999999999997 6789999999999999884 36999999999998888888888888663
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=125.82 Aligned_cols=165 Identities=24% Similarity=0.363 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHH
Q 010904 293 FCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALV 372 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 372 (497)
+..++...........+|.++.+. +|.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+.+++.++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~ 78 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEE----LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLL 78 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCC----STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHH
Confidence 445556666666777777555555 7999999999999999999999999999999999999888888888888444
Q ss_pred HHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc
Q 010904 373 LYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR 452 (497)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 452 (497)
..+. .+.+..++..++.|++.+...+.....+.+.+++++ +++++++.+....+|..++|.+.+.+.+.
T Consensus 79 ~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 147 (352)
T PF07690_consen 79 LAFA---SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE--------RGRAFGILSAGFSLGSILGPLLGGFLISY 147 (352)
T ss_dssp HHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC--------HHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred hhhh---hhHHHHhhhccccccccccccccccccccccchhhh--------hhhccccccchhhhhhhcccchhhhhhhc
Confidence 4432 455577888889999998999999999999998744 49999999999999999999999999876
Q ss_pred -CchHHHHHHHHHHHHHHHHH
Q 010904 453 -GWNSVFFMLIVSILFAGMFL 472 (497)
Q Consensus 453 -g~~~~~~~~~~~~~~~~~~~ 472 (497)
+|+..|++.+++.++..++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 148 FGWRWAFLISAILSLIAAILF 168 (352)
T ss_dssp CHHCCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhhhhH
Confidence 89999999999888887643
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=128.93 Aligned_cols=181 Identities=14% Similarity=0.123 Sum_probs=144.8
Q ss_pred hCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHh-hhhhhHHHH
Q 010904 284 KLPR-VAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDM-IEARAVTSV 361 (497)
Q Consensus 284 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~ 361 (497)
++|+ ++.+.+..++..+.+++...++|.|+++. +++|++..+++.+.....++..++.+++|+++|| +|||+.+..
T Consensus 7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~--~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~ 84 (475)
T TIGR00924 7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQ--AGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL 84 (475)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence 3443 45566667777888999999999999863 1158999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhh
Q 010904 362 AFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAAL 441 (497)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 441 (497)
+..+.+++.+++... .+.+...+...+.|++.+...+...+.+.+.+++++. +.++++.++.+...++|..+
T Consensus 85 ~~~~~~~g~~~~~~~---~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~-----~~r~~~~~~~~~~~niG~~i 156 (475)
T TIGR00924 85 GGIVLMLGHFMLAMS---IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM-----PRRDGGFTLFYMSINIGSFI 156 (475)
T ss_pred HHHHHHHHHHHHHhc---ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc-----ccccceehhHHHHHHHHHHH
Confidence 998888887766542 3445555666778888888888888888888876431 23477899999999999999
Q ss_pred hhcccceeecc-CchHHHHHHHHHHHHHHHHHHH
Q 010904 442 GPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIR 474 (497)
Q Consensus 442 ~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~ 474 (497)
+|.+.+++.++ +|+..|...++..+++.+....
T Consensus 157 g~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~ 190 (475)
T TIGR00924 157 SPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFA 190 (475)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887 9999999887666665444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-13 Score=138.78 Aligned_cols=141 Identities=11% Similarity=0.102 Sum_probs=121.1
Q ss_pred hhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhh
Q 010904 90 GELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAV 169 (497)
Q Consensus 90 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 169 (497)
.+...+..++..++.++.|+++||+|||++++++.++.+++.++.++. ++...+++.+++.|++.+..++...++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~-----~s~~~ll~~~~l~g~~~~~~~~~~~a~ 672 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG-----NSESAMIALLCLFGGLSIAAWNALDVL 672 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444667778999999999999999999999999999999999999887 777888888999998888888999999
Q ss_pred hhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhhcCcceeeehhhHHHHHHHHHHHhheecCCc
Q 010904 170 LGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPE 236 (497)
Q Consensus 170 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~ 236 (497)
++|++|.++|++++|+......+|.++||++++.+...+...+|++.+++.++.+++ ..++||+..
T Consensus 673 ~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll-~~~LPET~~ 738 (742)
T TIGR01299 673 TVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLL-ALKLPDTRG 738 (742)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHhCCCCcc
Confidence 999999999999999999999999999999999887666667888877777665444 445676543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=122.02 Aligned_cols=175 Identities=19% Similarity=0.260 Sum_probs=160.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHH
Q 010904 287 RVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLL 366 (497)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 366 (497)
.++.+.++.|......+.....+|...+| +|.|..++|...+.+..+..++.++...+.||++||+.+.....++
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~d-----l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF 88 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAAD-----LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 45677788888888999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhccc
Q 010904 367 SIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLA 446 (497)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 446 (497)
.++.++..+. ++++...+.=++.|+..+..++.......+.+|+++| +++.+++.....++..+|.+++
T Consensus 89 i~~n~l~alA---p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~--------~~Aiaiv~~G~tlA~v~GvPLG 157 (394)
T COG2814 89 IVSNLLSALA---PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKR--------GRALALVFTGLTLATVLGVPLG 157 (394)
T ss_pred HHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccch--------hhHHHHHHHHHHHHHHHhccHH
Confidence 9998888773 7888999999999999999999999999999998654 9999999999999999999999
Q ss_pred ceeecc-CchHHHHHHHHHHHHHHHHHHHHHh
Q 010904 447 GYISTR-GWNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 447 g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
.++-|. ||+.+|+..+++.+++.+..+...+
T Consensus 158 t~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 158 TFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999998 9999999999999998887777665
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=126.55 Aligned_cols=171 Identities=15% Similarity=0.065 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHH
Q 010904 289 APFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSI 368 (497)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 368 (497)
+......++.....+....++|.|+++. .|+++.+.|+..+...+...+..++.|+++||++||+.+..+..+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~ 88 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQ----LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAA 88 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHH
Confidence 4555677777788888888999998877 899999999999999999999999999999999999999988888888
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccce
Q 010904 369 PALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGY 448 (497)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 448 (497)
..+..... ++.+..++..++.|++.+...+...+.+.+.+|++ +++++.|+.+...++|..++|.+.|+
T Consensus 89 ~~~~~~~~---~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~~~~~g~~ig~~l~g~ 157 (400)
T PRK11646 89 GFATMAIA---HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH--------QRGRFFSLLMMQDSAGAVIGALLGSW 157 (400)
T ss_pred HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766542 45666677777788877766777778888888764 44999999999999999999999999
Q ss_pred eeccCchHHHHHHHHHHHHHHHHHHH
Q 010904 449 ISTRGWNSVFFMLIVSILFAGMFLIR 474 (497)
Q Consensus 449 l~~~g~~~~~~~~~~~~~~~~~~~~~ 474 (497)
+.+.+|+..|++.+...++..++...
T Consensus 158 l~~~g~~~~f~~~~~~~~~~~i~~~~ 183 (400)
T PRK11646 158 LLQYDFRLVCATGAVLFVLAAAFNAW 183 (400)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 98559999999887776666544433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-13 Score=136.24 Aligned_cols=147 Identities=16% Similarity=0.130 Sum_probs=128.3
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++ ++.+.+++.+++.|++.+...+.
T Consensus 261 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-----~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 261 TRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-----TGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999999988888887 88999999999999998888788
Q ss_pred hhhhhhcccCcccchhhHHH-HHHHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhheecCCcC
Q 010904 166 VVAVLGNWFGKAKRGLIMGV-WNSHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFLVVRPED 237 (497)
Q Consensus 166 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~ 237 (497)
...++.|.+|++.|+...+. ++....+|.++++.+.+++.+ .|||..|.+.+++.++..++.++.+++++++
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~~~ 409 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDREL 409 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 88999999999999887665 677788999999999999985 7999999999888887766666666654443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=126.05 Aligned_cols=173 Identities=13% Similarity=0.098 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHH
Q 010904 290 PFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIP 369 (497)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 369 (497)
.+....++...........+|.|..+ .+.++.+.+++.+...++.+++.++.|+++||+|||+.+..+..+..++
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~ 77 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVLA-----GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVL 77 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHH-----hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHH
Confidence 44566666677777777888888888 4899999999999999999999999999999999999998888777766
Q ss_pred HHHHHhhc--cCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccc
Q 010904 370 ALVLYRTY--GSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAG 447 (497)
Q Consensus 370 ~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g 447 (497)
..+..... ...+.+..++..++.|++.+...+...+.+.+.++++ ++++++|+.+....+|..++|.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~g~~l~~ 149 (365)
T TIGR00900 78 VAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE--------QLTQANSLSQAVRSLFYIVGPGIGG 149 (365)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH--------HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 65554432 1126677777888889888888888888888888864 4499999999999999999999999
Q ss_pred eeecc-CchHHHHHHHHHHHHHHHHHHHH
Q 010904 448 YISTR-GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 448 ~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
.+.+. +|+..|++.++..+++.+.....
T Consensus 150 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 150 LMYATLGIKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 99887 99999988777666655544443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-13 Score=131.49 Aligned_cols=133 Identities=17% Similarity=0.162 Sum_probs=116.1
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhH--HHHHHHHHHHhhhhhcccc
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHL--LVYFVGVQIFCGLFQSIGW 163 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~ 163 (497)
..+.+++.+.+.++..++.++.|++.||+|||+.+.++.++.+++.++..+. ++ ...++...++.|++.+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~g~~~ 313 (377)
T TIGR00890 239 DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI-----PMLNDVLFLATVALVFFTWGGTI 313 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc-----ccchhHHHHHHHHHHHHHhccch
Confidence 7788999999999999999999999999999999999999988888877765 42 3345566788888888888
Q ss_pred hhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHH
Q 010904 164 PCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFV 223 (497)
Q Consensus 164 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~ 223 (497)
+....++.|.+|+++|+++.|+......+|..++|.+.+.+. ..||++.|++.+++.++.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 314 SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 888889999999999999999999999999999999999888 579999999887766553
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.8e-13 Score=129.52 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=115.1
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
..+.+++.+...++..++.++.|+++||+|||+.+..+.....+........ ++.+.+++.+++.+++.+...+.
T Consensus 251 ~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~g~~~~~ 325 (393)
T PRK15011 251 EKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA-----HSPAILLGLQLLNAIYIGILGGI 325 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 7888988888778888899999999999999998887776666555444444 77888888999988887777777
Q ss_pred hhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhheec
Q 010904 166 VVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFLVV 233 (497)
Q Consensus 166 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~ 233 (497)
...+..|.+| ++|++++++++...++|..+|+.+++.+.+ .||+..|++.+++.++. ++..+..||
T Consensus 326 ~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~ 392 (393)
T PRK15011 326 GMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIAT-LFCLLRIKD 392 (393)
T ss_pred HHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHhhcC
Confidence 7788899997 569999999999999999999999999885 79999999887777665 444445554
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.7e-13 Score=129.50 Aligned_cols=185 Identities=16% Similarity=0.115 Sum_probs=142.9
Q ss_pred hhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhh
Q 010904 276 AIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEA 355 (497)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~ 355 (497)
..+++.+.++|.++...+..++...........+|.+.++. +.++.+.|++.+...++.++++++.|+++||++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~ 81 (417)
T PRK10489 7 LLDLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMM-----TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDR 81 (417)
T ss_pred HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCC
Confidence 34455666789998888888888888878888899988884 7799999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHh--hccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhh
Q 010904 356 RAVTSVAFLLLSIPALVLYR--TYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDG 433 (497)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 433 (497)
|+.+..+..+.+++...+.. .....+.+...+..++.|++.+...+.....+.+.+++ ++++++.++.+.
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 153 (417)
T PRK10489 82 KKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGR--------ENLMQAGAITML 153 (417)
T ss_pred ceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH--------HHHHHHHHHHHH
Confidence 99887776666655444321 11234555666666777777666666667777777775 344889999999
Q ss_pred hhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHH
Q 010904 434 TGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLI 473 (497)
Q Consensus 434 ~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 473 (497)
..++|..++|.+.|.+.+. +|+..+.+.++..+++.+...
T Consensus 154 ~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (417)
T PRK10489 154 TVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLL 194 (417)
T ss_pred HHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887 888888877766665554443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=120.45 Aligned_cols=172 Identities=19% Similarity=0.302 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHH
Q 010904 290 PFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIP 369 (497)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 369 (497)
...+.+...++.--.+..-.|...++ .++|..+.|.+.+.+.+..-++..+.|.++||.+.|..+..+.++.++.
T Consensus 33 ~~fiGYa~fYl~RknF~~a~p~l~e~-----~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~ 107 (448)
T COG2271 33 SIFIGYAAFYLTRKNFNLAMPALIED-----GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIV 107 (448)
T ss_pred HHHHHHHHHHHHHHhHhhccHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHH
Confidence 33344444444444555666766666 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhccc--c
Q 010904 370 ALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLA--G 447 (497)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~--g 447 (497)
.+++.+. ++.+.+.++..+.|.+.+..+|+....+...++..+| |+..++-|+..++|+.+.|.+. +
T Consensus 108 nil~Gfs---~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eR--------G~~~siWn~shNiGGal~~~~~~la 176 (448)
T COG2271 108 NILFGFS---PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKER--------GTWWSIWNTSHNIGGALAPLVALLA 176 (448)
T ss_pred HHHHhhh---hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcccc--------CceEEEehhhhhcccchHHHHHHHH
Confidence 9888774 5788888899999999999999999999999998554 9999999999999999999999 8
Q ss_pred eeecc-CchHHHHHHHHHHHHHHHHHHHHHh
Q 010904 448 YISTR-GWNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 448 ~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
++.++ +|+..|++-+++.++..++.+...+
T Consensus 177 ~~~~~~~w~~~f~~pgiiaiival~~~~~~r 207 (448)
T COG2271 177 FFAFHGGWRAAFYFPGIIAIIVALILLFLLR 207 (448)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 88877 9999999999998888777776654
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=126.67 Aligned_cols=139 Identities=14% Similarity=0.087 Sum_probs=120.4
Q ss_pred chhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhh
Q 010904 89 LGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVA 168 (497)
Q Consensus 89 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 168 (497)
.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+. ++.+.+++.+++.|++.+..++....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~~~~~~~~~~ 325 (399)
T PRK05122 251 AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-----PSPWMALIGAALTGFGFSLVFPALGV 325 (399)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4666778889999999999999999999999999998888888888776 78888889999999999988888888
Q ss_pred hhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhhee
Q 010904 169 VLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLV 232 (497)
Q Consensus 169 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~ 232 (497)
.+.|.+|+++|+++.++++....+|..+++.+.+.+. ..||++.|++.+++.++..++.++..+
T Consensus 326 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 326 EAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8889999999999999999999999999998888887 479999999988887776555544433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7e-12 Score=124.42 Aligned_cols=176 Identities=11% Similarity=0.050 Sum_probs=141.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHh-hhhhhHHHHHHH
Q 010904 286 PRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDM-IEARAVTSVAFL 364 (497)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~ 364 (497)
+.+|..+...+...+.+++...+++.|+++. +|++..+++.+...+.....+..+++|+++|| +|||+.+..+..
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~----lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQ----LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 3456667777788899999999999999987 89999999888888887777778899999999 999999999999
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhc
Q 010904 365 LLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPL 444 (497)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 444 (497)
+..++.+.+.+.. ......++...+.|++.+...+...+.+.+.+|+++ +.++.+.++.+...++|..++|.
T Consensus 90 ~~~~g~~~~~~~~--~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~------~~~~~~~~~~~~~~nig~~~g~~ 161 (489)
T PRK10207 90 VLAIGYFMTGMSL--LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD------PRLDGAFTLFYMSINIGSLISLS 161 (489)
T ss_pred HHHHHHHHHHHhc--cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc------hhhhcchhHHHHHHHHHHHHHHH
Confidence 9998887776531 112234456677788888888888999999998754 23467789999999999999999
Q ss_pred ccceeecc-CchHHHHHHHHHHHHHHHHHH
Q 010904 445 LAGYISTR-GWNSVFFMLIVSILFAGMFLI 473 (497)
Q Consensus 445 ~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 473 (497)
+.|++.++ ||+..|++.++..+++.+...
T Consensus 162 l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~ 191 (489)
T PRK10207 162 LAPVIADKFGYSVTYNLCGAGLIIALLVYF 191 (489)
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Confidence 99999888 999999886654444444333
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=120.92 Aligned_cols=176 Identities=16% Similarity=0.126 Sum_probs=128.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHH
Q 010904 285 LPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFL 364 (497)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~ 364 (497)
||.+|.+....++.......+..++|.|+++. +|.++.+.|...+...++..+++++.|+++||+|||+.+.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~ 76 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDV----NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIIS 76 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 57889999999999999989999999999987 89999999999999999999999999999999999999877655
Q ss_pred HHHHHHHHHHhhccCc-----hhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhh
Q 010904 365 LLSIPALVLYRTYGSI-----SMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGA 439 (497)
Q Consensus 365 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 439 (497)
...+............ ......+..++.|++.+...+....+..+..+ ..+...|......++|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~~~~~g~ 146 (396)
T TIGR00882 77 GLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR----------NSNFEYGKARMFGCVGW 146 (396)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh----------hcccccchhhhhcccHH
Confidence 5544333221110001 11122333445566666655555554443321 11445667777789999
Q ss_pred hhhhcccceeeccCchHHHHHHHHHHHHHHHHHHH
Q 010904 440 ALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIR 474 (497)
Q Consensus 440 ~~~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~ 474 (497)
.++|.+.|.+.+.+|+..|++.+++.++..++.+.
T Consensus 147 ~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 147 ALCASIAGILFSIDPQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred HHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999887779999998888777766655443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-12 Score=126.49 Aligned_cols=173 Identities=16% Similarity=0.176 Sum_probs=142.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHH
Q 010904 287 RVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLL 366 (497)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 366 (497)
.+|...+..++.....+.+..++|.+.++ +|.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~ 85 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQS-----LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLF 85 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 46777788888888888888899999987 6999999999999999999999999999999999999988887777
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhccc
Q 010904 367 SIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLA 446 (497)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 446 (497)
+++.+.... ..+.+..++..++.|++.+...+.....+.+.+|+ ++++++.|+.+...++|..++|.+.
T Consensus 86 ~~~~~~~~~---~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~g~~~~ 154 (471)
T PRK10504 86 TLGSLFCAL---SGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR--------EQYMAAMTFVTLPGQVGPLLGPALG 154 (471)
T ss_pred HHHHHHHHH---hCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH--------HHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 766655443 24566667778888998888888888888888875 4458999999999999999999999
Q ss_pred ceeecc-CchHHHHHHHHHHHHHHHHHHHH
Q 010904 447 GYISTR-GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 447 g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
|.+.+. +|+..|.+......++.+.....
T Consensus 155 g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~ 184 (471)
T PRK10504 155 GLLVEYASWHWIFLINIPVGIIGAIATLML 184 (471)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999887 99999988877666665554443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-12 Score=125.58 Aligned_cols=138 Identities=14% Similarity=0.121 Sum_probs=121.5
Q ss_pred chhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhh
Q 010904 89 LGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVA 168 (497)
Q Consensus 89 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 168 (497)
.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~ 325 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-----PTAWVALAGAALTGAGCSLIFPALGV 325 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4566777888889999999999999999999999999998888888776 78888888999999999988888888
Q ss_pred hhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhhe
Q 010904 169 VLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFL 231 (497)
Q Consensus 169 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~ 231 (497)
.+.|.+|+++|+++.++++....+|..+||.+.+.+.+ .||++.|.+.+++.++..++.++..
T Consensus 326 ~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 326 EVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999999999999999999884 7999999999988877666555443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-12 Score=127.49 Aligned_cols=184 Identities=16% Similarity=0.132 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccccc
Q 010904 35 TALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTI 114 (497)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~ 114 (497)
..+...++..+.............|.+.+++ +++ ..+.++......++..++.++.|+++||+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 346 (481)
T TIGR00879 284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENA----------GVS-------TDHAFLVSIIVGAVNFAFTFVAIFLVDRF 346 (481)
T ss_pred HHHHHHHHHHHHHHhCCeehHHHHHHHHHHc----------CCC-------chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444455567777777 776 77788889999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhhhhh------HHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHH
Q 010904 115 DLRLFLVFGMMGSGLFTIIFGLAYWLSVH------LLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNS 188 (497)
Q Consensus 115 Grr~~l~~~~~~~~i~~~~~~~~~~~~~~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 188 (497)
|||+.+..+.++.+++.++.++......+ +...+....++.+.......+....++.|.+|+++|++++++...
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 426 (481)
T TIGR00879 347 GRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVA 426 (481)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHH
Confidence 99999999988888887777632100011 333333333333333333446667778999999999999999999
Q ss_pred HhhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCC
Q 010904 189 HTSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRP 235 (497)
Q Consensus 189 ~~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p 235 (497)
...+|..++|.+.+.+. +.+|++.|++.++++++.+++.+++.||.+
T Consensus 427 ~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 427 ANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence 99999999999988887 479999999999988887777766666644
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.1e-12 Score=121.59 Aligned_cols=170 Identities=13% Similarity=0.099 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHH
Q 010904 288 VAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLS 367 (497)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 367 (497)
++...+..++...........+|.+.++ +|.|..+.+++.+...++..++.++.|++.||+|||+.+..+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~-----~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 9 TWISFLSYALTGALVIVTGMVMGPIAEY-----FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444555555555555666777887766 69999999999999999999999999999999999999988887777
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccc
Q 010904 368 IPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAG 447 (497)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g 447 (497)
++.++.... ++.+...+..++.|++.+...+.....+.+..|+ +.++.+.+..+....+++.++|.+.+
T Consensus 84 i~~~l~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~--------~~r~~~~~~~~~~~~~g~~~~~~~~~ 152 (394)
T PRK03699 84 LAVAGLMFS---HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEG--------KQRGSRLLFTDSFFSMAGMIFPIIAA 152 (394)
T ss_pred HHHHHHHHc---chHHHHHHHHHHHHHhhHhhccchhHHhhhhccc--------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666542 4566667777888888887777777888888765 33488888888888889999999988
Q ss_pred eeecc--CchHHHHHHHHHHHHHHHHHH
Q 010904 448 YISTR--GWNSVFFMLIVSILFAGMFLI 473 (497)
Q Consensus 448 ~l~~~--g~~~~~~~~~~~~~~~~~~~~ 473 (497)
.+.+. +|+..|...+++.++..++.+
T Consensus 153 ~l~~~~~gw~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 153 YLLARSIEWYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 87653 899999888777666554433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.9e-12 Score=119.87 Aligned_cols=169 Identities=20% Similarity=0.278 Sum_probs=127.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHH
Q 010904 287 RVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLL 366 (497)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 366 (497)
.+|...+..+......+....+.|.++++. +|+|+.+.+++.+...++.+++.++.|+++||+|||+.+..+..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 77 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDD----LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLL 77 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHH----hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 456677777777777788888889777776 8999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHhhccCc-hhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcc
Q 010904 367 SIPALVLYRTYGSI-SMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLL 445 (497)
Q Consensus 367 ~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 445 (497)
.++.++..+. . +.+..++..++.|++. +.+......+.+.++++ +++++.++.....++|..+++.+
T Consensus 78 ~i~~~~~~~~---~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~--------~r~~~~~~~~~~~~~g~~~~~~i 145 (366)
T TIGR00886 78 AIPCLWAGLA---VQSYSVLLLLRLFIGIAG-GSFASCMPWISFFFPKK--------IQGTALGLAAGWGNMGGGVAQFV 145 (366)
T ss_pred HHHHHHHHHH---hhhHHHHHHHHHHHHHhc-hhhHhHHHHHHHhcCHh--------hhhHHHHHHHHHhHHHHHHHHHH
Confidence 8877766553 3 5666666777778774 44556677777777753 44889998887777777777766
Q ss_pred cceeec----------c-CchHHHH-HHHHHHHHHHHH
Q 010904 446 AGYIST----------R-GWNSVFF-MLIVSILFAGMF 471 (497)
Q Consensus 446 ~g~l~~----------~-g~~~~~~-~~~~~~~~~~~~ 471 (497)
.+.+.+ . +|+..|+ ..+++..+..++
T Consensus 146 ~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 183 (366)
T TIGR00886 146 MPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALL 183 (366)
T ss_pred HHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHH
Confidence 655443 1 6888883 334444433333
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-12 Score=123.33 Aligned_cols=162 Identities=19% Similarity=0.276 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 010904 298 SKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTY 377 (497)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (497)
............|.+.++ +|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 17 ~~~~~~~~~~~~p~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~- 90 (385)
T TIGR00710 17 GPLGIDMYLPAFPEIAAD-----LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS- 90 (385)
T ss_pred HHHHHHHhcccHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-
Confidence 334444455566766666 69999999999999999999999999999999999999998888877777666543
Q ss_pred cCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchH
Q 010904 378 GSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNS 456 (497)
Q Consensus 378 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~ 456 (497)
++.+...+..++.|++.+...+.....+.+.+|+ ++++++.|+.+....+|..++|.+.+.+.+. +|+.
T Consensus 91 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~ 160 (385)
T TIGR00710 91 --NNIETLLVLRFVQAFGASAGSVISQALVRDIYPG--------EELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHA 160 (385)
T ss_pred --ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 4566777778888998888888888888888876 4459999999999999999999999988887 9999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010904 457 VFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~ 475 (497)
.+++.+++.++..+.....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 161 IFAFLSLAGILLSALIFFI 179 (385)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9988887777666555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=124.63 Aligned_cols=171 Identities=15% Similarity=0.153 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHH
Q 010904 290 PFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIP 369 (497)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 369 (497)
.+.+..++............|.+.++ +|.++.+.+++.+.+.++.+++.++.|+++||+|||+.+..+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGD-----LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 34455555555566666778887777 6999999999999999999999999999999999999999988888877
Q ss_pred HHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhccccee
Q 010904 370 ALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYI 449 (497)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 449 (497)
.++... .++.+..++..++.|++.+...+.....+.+.+|++ .++++.++......+|..++|.+.|++
T Consensus 81 ~~~~~~---~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~--------~r~~~~~~~~~~~~~g~~~g~~~~~~l 149 (485)
T TIGR00711 81 SLLCGV---APNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE--------KRGRAMAIWGLTVLVAPALGPTLGGWI 149 (485)
T ss_pred HHHHhC---cCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH--------HHHHHHHHHHHHHHHHhhhhhccHhHh
Confidence 766654 256777778888899998888888889999998864 449999999999999999999999999
Q ss_pred ecc-CchHHHHHHHHHHHHHHHHHHHHH
Q 010904 450 STR-GWNSVFFMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 450 ~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 476 (497)
.++ +|+..|++.+.+.++..++.....
T Consensus 150 ~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 177 (485)
T TIGR00711 150 IENYHWRWIFLINVPIGIIVVVVAFFIL 177 (485)
T ss_pred ccCcCceehhhhhhHHHHHHHHHHHHHc
Confidence 887 999999988777766665554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=120.34 Aligned_cols=172 Identities=16% Similarity=0.175 Sum_probs=140.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHH
Q 010904 286 PRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLL 365 (497)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 365 (497)
+.++...+..++...........+|.+.++ +|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 77 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHD-----VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVAL 77 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHH-----cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHH
Confidence 456677777777777777888888888777 699999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcc
Q 010904 366 LSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLL 445 (497)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 445 (497)
.+++.++.... ++.+.+++..++.|++.+...+.....+.+..++ ++++.++++......++..++|.+
T Consensus 78 ~~~~~~l~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~g~~l 146 (382)
T PRK10091 78 CVIGNAMFTLS---SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP--------GKVTAAVAGMVSGMTVANLLGIPL 146 (382)
T ss_pred HHHHHHHHHHh---CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh--------HHhhHHHHHHHHHHHHHHHHhccH
Confidence 88877766553 5677777788888988877777666666666665 334888999888889999999999
Q ss_pred cceeecc-CchHHHHHHHHHHHHHHHHHH
Q 010904 446 AGYISTR-GWNSVFFMLIVSILFAGMFLI 473 (497)
Q Consensus 446 ~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 473 (497)
.+++.+. +|+..|.+.+++.++..+...
T Consensus 147 ~~~l~~~~gwr~~f~~~~~~~~~~~~~~~ 175 (382)
T PRK10091 147 GTYLSQEFSWRYTFLLIAVFNIAVLASIY 175 (382)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 9988877 999999998887666555433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=9e-12 Score=123.01 Aligned_cols=175 Identities=17% Similarity=0.251 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHH
Q 010904 288 VAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLS 367 (497)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 367 (497)
++...+...........+....| ++++ .|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~p-~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 29 FLGIFFGYAAYYLVRKNFALAMP-YLVE-----QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHhccHHhhhH-HHHH-----cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence 33344443433333333444555 4555 48999999999999999999999999999999999998888877777
Q ss_pred HHHHHHHhhcc-CchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhccc
Q 010904 368 IPALVLYRTYG-SISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLA 446 (497)
Q Consensus 368 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 446 (497)
++.++...... ..+.+...+..++.|++.+..++.....+.+.+|+++ +++++|+.+....+++.+++.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~--------rg~~~~~~~~~~~~g~~~~~~l~ 174 (438)
T TIGR00712 103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE--------RGTIVSIWNCAHNIGGGIPPLLV 174 (438)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc--------chhHHHHHHHHHHhHhHHHHHHH
Confidence 76665543211 1234445556677888888888888888888887643 49999999999999999999887
Q ss_pred ceeec-c-CchHHHHHHHHHHHHHHHHHHHHH
Q 010904 447 GYIST-R-GWNSVFFMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 447 g~l~~-~-g~~~~~~~~~~~~~~~~~~~~~~~ 476 (497)
+...+ . +|+..|++.+++.++..+..++..
T Consensus 175 ~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~ 206 (438)
T TIGR00712 175 LLGMAWFNDWHAALYFPAICAIIVALFAFAMM 206 (438)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 76544 3 899999998888777665555443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.8e-12 Score=121.24 Aligned_cols=170 Identities=14% Similarity=0.169 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHH
Q 010904 289 APFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSI 368 (497)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 368 (497)
+.+.+..+......+.....+|.+.++ +|.++.+.|+..+...++..++.++.|++.||+|||+.+..+..+..+
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 86 (390)
T PRK03545 12 VTLALAAFIFNTTEFVPVGLLSDIAQS-----FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA 86 (390)
T ss_pred HHHHHHHHHHHhHHHHHHcchHHHHhH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 333343333333333333456766665 799999999999999999999999999999999999999998888887
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccce
Q 010904 369 PALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGY 448 (497)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 448 (497)
+.+...+. ++.+.+.+.-++.|++.+..++...+.+.+..|+++ +++++|+......+|..++|.+.+.
T Consensus 87 ~~~~~~~~---~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~--------r~~~~g~~~~~~~~g~~ig~~l~~~ 155 (390)
T PRK03545 87 SHVLSALA---WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK--------KAQALSLLATGTALAMVLGLPLGRV 155 (390)
T ss_pred HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh--------hhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 77666553 566777777778888877767777788888887644 4999999999999999999999999
Q ss_pred eecc-CchHHHHHHHHHHHHHHHHHHH
Q 010904 449 ISTR-GWNSVFFMLIVSILFAGMFLIR 474 (497)
Q Consensus 449 l~~~-g~~~~~~~~~~~~~~~~~~~~~ 474 (497)
+.+. +|+..|++.+++.++..+....
T Consensus 156 l~~~~gw~~~f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 156 IGQYLGWRTTFLAIGGGALITLLLLIK 182 (390)
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 8887 9999999988877766554443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=120.23 Aligned_cols=154 Identities=17% Similarity=0.216 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCc
Q 010904 301 VAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSI 380 (497)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (497)
..+.....+|.+.++ +|.++.+.++..+...++..+++++.|+++||+|||+.+..+..+.+++.+..... .
T Consensus 35 ~~~~~~~~l~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~---~ 106 (394)
T PRK10213 35 VEFLPVSLLTPMAQD-----LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA---N 106 (394)
T ss_pred HHHHHHhhHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH---C
Confidence 333444567777666 69999999999999999999999999999999999999999988888776665542 5
Q ss_pred hhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHH
Q 010904 381 SMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFF 459 (497)
Q Consensus 381 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~ 459 (497)
+.+.+++.-++.|++.+...+.....+.+.+|+ ++++.+.++.....+++..++|.+.+.+.+. +|+..|+
T Consensus 107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--------~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~ 178 (394)
T PRK10213 107 SFSLLLIGRACLGLALGGFWAMSASLTMRLVPP--------RTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFN 178 (394)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 677888888899999988888888888888876 4459999999999999999999999999887 9999998
Q ss_pred HHHHHHHHHHH
Q 010904 460 MLIVSILFAGM 470 (497)
Q Consensus 460 ~~~~~~~~~~~ 470 (497)
+.+++.+++.+
T Consensus 179 ~~~~l~~~~~l 189 (394)
T PRK10213 179 AAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHHH
Confidence 88766655443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-11 Score=122.42 Aligned_cols=173 Identities=16% Similarity=0.127 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHH
Q 010904 289 APFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSI 368 (497)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 368 (497)
..+++..++..........-+|.+.++ +|.+..+.+++...+.++...+.++.|+++||+|||+.+..+..+..+
T Consensus 9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~-----l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 9 VIIVLVYIPVAIDATVLHVAAPTLSMT-----LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345556666666666777788988877 699999999999999999999999999999999999999999988888
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccce
Q 010904 369 PALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGY 448 (497)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 448 (497)
+.+..... ++.+.+++.-++.|++.+...+.....+.+.+++ +++++++.|+......+|..++|.+.|+
T Consensus 84 ~~~~~~~a---~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~-------~~~r~~~~g~~~~~~~~g~~~gp~lgg~ 153 (495)
T PRK14995 84 ASLAAAFS---PTASWLIATRALLAIGAAMIVPATLAGIRATFTE-------EKQRNMALGVWAAVGSGGAAFGPLVGGI 153 (495)
T ss_pred HHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776653 5677777777888888877776666666666643 2456999999999999999999999999
Q ss_pred eecc-CchHHHHHHHHHHHHHHHHHHHHH
Q 010904 449 ISTR-GWNSVFFMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 449 l~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 476 (497)
+.++ +|++.|++...+.++..++.....
T Consensus 154 l~~~~gwr~~f~i~~~~~~~~~~l~~~~l 182 (495)
T PRK14995 154 LLEHFYWGSVFLINVPIVLVVMGLTARYV 182 (495)
T ss_pred hhccCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 9998 999999988777776655555443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-11 Score=119.35 Aligned_cols=168 Identities=16% Similarity=0.212 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHH
Q 010904 291 FAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPA 370 (497)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 370 (497)
.....++............|.+.++ +|.++.+.+++.+...++.+++.++.|+++||+|||+.+..+..+..++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 94 (406)
T PRK11551 20 CFLVALLEGLDLQSAGVAAPRMAQE-----FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFS 94 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 3344444455555566667777766 69999999999999999999999999999999999999998887777766
Q ss_pred HHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceee
Q 010904 371 LVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYIS 450 (497)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 450 (497)
++... ..+.+...+..++.|++.+...+.....+.+.++++ ++++++++.+....+|..+++.+.+.+.
T Consensus 95 ~~~~~---~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~--------~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (406)
T PRK11551 95 LATAQ---AWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR--------LRGTAVSLMYCGVPFGGALASVIGVLAA 163 (406)
T ss_pred HHHHH---hccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55544 256677777888889988888888888888988764 4499999999999999999999887777
Q ss_pred cc-CchHHHHHHHHHHHHHHHHHHH
Q 010904 451 TR-GWNSVFFMLIVSILFAGMFLIR 474 (497)
Q Consensus 451 ~~-g~~~~~~~~~~~~~~~~~~~~~ 474 (497)
+. +|+..|++.+++.++..++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (406)
T PRK11551 164 GDAAWRHIFYVGGVGPLLLVPLLMR 188 (406)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHH
Confidence 76 8999888877665555444433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-12 Score=126.08 Aligned_cols=140 Identities=19% Similarity=0.230 Sum_probs=122.9
Q ss_pred chhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhh
Q 010904 89 LGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVA 168 (497)
Q Consensus 89 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 168 (497)
.+.+.+.+.++..++.+..|++.||+|||+.+..+..+..++.+...+. ++.+.+++.+++.|++.+...+...+
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-----QTPLQLGILRFLLGAADGALLPAVQT 334 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhhhHhhHHHHHH
Confidence 4666777788888999999999999999999999988888877777776 78888899999999999999999999
Q ss_pred hhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheec
Q 010904 169 VLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVV 233 (497)
Q Consensus 169 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~ 233 (497)
.+.+..|+++|++.++++.....+|..+||.+++.+. ..||++.|++.+++.++..+..++..++
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 335 LLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred HHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988 4799999999998888876666555443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=120.14 Aligned_cols=165 Identities=19% Similarity=0.224 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHH
Q 010904 289 APFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSI 368 (497)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 368 (497)
....+..+...+.........|.+.++ +|.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 89 (405)
T TIGR00891 15 SAAWLGWLLDAFDFFLVALVLAEVAGE-----FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSA 89 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555555666666766555 699999999999999999999999999999999999999988887777
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccce
Q 010904 369 PALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGY 448 (497)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 448 (497)
+.++..+. .+.+..+...++.|++.+..++.....+.+..++++ ++.+.++.+....+|..+++.+.+.
T Consensus 90 ~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~l~~~ 158 (405)
T TIGR00891 90 GTLACGFA---PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL--------RNKASGLLISGYAVGAVVAAQVYSL 158 (405)
T ss_pred HHHHHHHh---ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh--------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665542 466777778888999988888888888999888644 4999999999999999999999888
Q ss_pred eecc-C--chHHHHHHHHHHHHHH
Q 010904 449 ISTR-G--WNSVFFMLIVSILFAG 469 (497)
Q Consensus 449 l~~~-g--~~~~~~~~~~~~~~~~ 469 (497)
+.+. + |+..|.+.++..++..
T Consensus 159 l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 159 VVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHH
Confidence 7765 4 8888877655544443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=119.55 Aligned_cols=170 Identities=18% Similarity=0.212 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHH
Q 010904 290 PFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIP 369 (497)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 369 (497)
......+............+|.+.++ +|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lp~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~ 81 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVGLPRIAAD-----LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIA 81 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHH
Confidence 33444444445555566778887777 5999999999999999999999999999999999999998888777777
Q ss_pred HHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhccccee
Q 010904 370 ALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYI 449 (497)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 449 (497)
....... .+.+..++..++.|++.+...+.....+.+.+++ ++++++.++.+....++..++|.+.+.+
T Consensus 82 ~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~--------~~r~~~~~~~~~~~~i~~~~~~~i~~~l 150 (392)
T PRK10473 82 SLLCSLA---ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD--------RRRAKVLSLLNGITCIIPVLAPVLGHLI 150 (392)
T ss_pred HHHHHHh---CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665542 4555566666778888777777788888888876 4458999999999999999999998887
Q ss_pred ecc-CchHHHHHHHHHHHHHHHHHHHH
Q 010904 450 STR-GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 450 ~~~-g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
.+. +|+..+++.+++.++..++....
T Consensus 151 ~~~~g~~~~~~~~~~~~~i~~~~~~~~ 177 (392)
T PRK10473 151 MLKFPWQSLFYTMAAMGILVLLLSLFI 177 (392)
T ss_pred HhCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 766 99999988887777666654444
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-11 Score=121.00 Aligned_cols=159 Identities=16% Similarity=0.268 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccC
Q 010904 300 LVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGS 379 (497)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (497)
...+....+.|.+.++ +|++..+.+++.+...++..++.++.|+++||+|+|+.+..+.++.+++.++..+.
T Consensus 50 ~~~~~~~~~~~~l~~~-----~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--- 121 (476)
T PLN00028 50 VSTFAAAPLLPIIRDN-----LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV--- 121 (476)
T ss_pred HHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh---
Confidence 3334444555656555 79999999999888999999999999999999999999888777777766555442
Q ss_pred chhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeec--------
Q 010904 380 ISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYIST-------- 451 (497)
Q Consensus 380 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-------- 451 (497)
.+.+..++..++.|++.+.. ......+.+.+|++ .+|.+.|+.+...++|..+++.+.+.+..
T Consensus 122 ~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~--------~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 192 (476)
T PLN00028 122 SSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGK--------IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAP 192 (476)
T ss_pred cCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChh--------heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 35555556667778776653 33445667777753 44999999988777777777665544321
Q ss_pred -c-CchHHHHHHHHHHHHHHHHHHHH
Q 010904 452 -R-GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 452 -~-g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
. +|+..|++.+++.++..+..+.+
T Consensus 193 ~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 193 SFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2 79999999888877666555544
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-11 Score=118.15 Aligned_cols=170 Identities=12% Similarity=0.112 Sum_probs=125.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHH
Q 010904 286 PRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLL 365 (497)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 365 (497)
+.+....++.++.....+....+++.++++ +|.++.+.++..+.+.++..++.++.|++.||+|||+.+..+..+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~ 87 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKA-----LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLL 87 (402)
T ss_pred chhhHHHHHHHHHHHhhhhHHHhHHHHHHH-----hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 445666677777777777777788888876 699999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHhh-ccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhh-hhhh
Q 010904 366 LSIPALVLYRT-YGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGA-ALGP 443 (497)
Q Consensus 366 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~~~~ 443 (497)
..++.++.... ....+.+......++.|++.+...+.....+.+..++ +++++++|+.+...++|. .++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~~~g~ 159 (402)
T TIGR00897 88 WCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ--------DNLSSAVGWFWAVYSIGIGVFGS 159 (402)
T ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77765543221 1123455555566667777665555555666676665 445999999999999986 5789
Q ss_pred cccceeecc-CchHHHHHHHHHHHHH
Q 010904 444 LLAGYISTR-GWNSVFFMLIVSILFA 468 (497)
Q Consensus 444 ~~~g~l~~~-g~~~~~~~~~~~~~~~ 468 (497)
.+.+++.+. |++..++.......++
T Consensus 160 ~~~~~l~~~~g~~~~~~~~~~~~~~~ 185 (402)
T TIGR00897 160 YYSSYAIPAFGEMNTLWSALAFVLTG 185 (402)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHH
Confidence 888888876 7665555444433333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-12 Score=123.87 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCc
Q 010904 301 VAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSI 380 (497)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (497)
....+....|.+.++ +|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..++..+.... .
T Consensus 9 ~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---~ 80 (399)
T TIGR00893 9 DRANLSFAAPMLQED-----LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA---G 80 (399)
T ss_pred HHHhhhHhHHHHHHh-----hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH---c
Confidence 334444555654444 79999999999999999999999999999999999999988888877777666553 4
Q ss_pred hhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHH
Q 010904 381 SMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFF 459 (497)
Q Consensus 381 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~ 459 (497)
+.+..++..++.|++.+...+.....+.+.+|+ +++++++++.+....+|..++|.+.+.+.+. +|+..|.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 152 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA--------SERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFI 152 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH--------HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHH
Confidence 677778888899999888888888999998886 4459999999999999999999999988777 9999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 010904 460 MLIVSILFAGMFLIRI 475 (497)
Q Consensus 460 ~~~~~~~~~~~~~~~~ 475 (497)
..+++.++..+.....
T Consensus 153 ~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 153 IEGVLGIIWGVLWLKF 168 (399)
T ss_pred HHHHHHHHHHHHhhhe
Confidence 8887777665555443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.9e-12 Score=122.52 Aligned_cols=165 Identities=19% Similarity=0.260 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHh
Q 010904 296 FFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYR 375 (497)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 375 (497)
++.......+....|.+.++ +|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..++.++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 79 (379)
T TIGR00881 5 AAYYLVRKNFALAMPYLVEE-----IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF 79 (379)
T ss_pred hHHHHhHHhhhhhhHHHHHH-----hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH
Confidence 34444555566666765554 7999999999999999999999999999999999999999998888887777655
Q ss_pred hccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhc-ccceeecc-C
Q 010904 376 TYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPL-LAGYISTR-G 453 (497)
Q Consensus 376 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~-~~g~l~~~-g 453 (497)
. .+.+..++..++.|++.+...+.....+.+.+|+++ ++++.++.+....+|..++|. +.+.+.+. +
T Consensus 80 ~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 148 (379)
T TIGR00881 80 S---TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE--------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS 148 (379)
T ss_pred h---hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh--------heeeEeehhccchhHHHHHHHHHHHHHHhcCC
Confidence 3 466777788888899998888999989999988643 488899999999999999994 55555555 8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 010904 454 WNSVFFMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ 476 (497)
|+..|++.+++.++..++.....
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T TIGR00881 149 WHWVFIVPGIIAIIVSLICFLLL 171 (379)
T ss_pred chhHHHHHHHHHHHHHHHHheee
Confidence 99998888777666555554443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-11 Score=121.15 Aligned_cols=159 Identities=24% Similarity=0.315 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccC
Q 010904 300 LVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGS 379 (497)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (497)
..........|.+.++ +|.++.+.+++.+...++.+++.++.|+++||++||+.+..+..+..++.++....
T Consensus 31 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--- 102 (398)
T TIGR00895 31 YDLAAMGFAAPAISAE-----WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA--- 102 (398)
T ss_pred HHHHHHHhhHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc---
Confidence 3344445556666655 69999999999999999999999999999999999999988887777776665542
Q ss_pred chhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHH
Q 010904 380 ISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVF 458 (497)
Q Consensus 380 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~ 458 (497)
.+.+..++..++.|++.+...+.....+.+.+|++ .++++.++.+....+|..+++.+.+++.+. +|+..+
T Consensus 103 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~ 174 (398)
T TIGR00895 103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR--------FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLF 174 (398)
T ss_pred cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHH--------hhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeeh
Confidence 45666777788899999998999999999988764 448999999999999999999999998887 899888
Q ss_pred HHHHHHHHHHHHHHHH
Q 010904 459 FMLIVSILFAGMFLIR 474 (497)
Q Consensus 459 ~~~~~~~~~~~~~~~~ 474 (497)
++.+++.++..++...
T Consensus 175 ~~~~~~~~~~~~~~~~ 190 (398)
T TIGR00895 175 YVGGIAPLLLLLLLMR 190 (398)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 8876555554444433
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.3e-10 Score=106.23 Aligned_cols=317 Identities=16% Similarity=0.141 Sum_probs=202.0
Q ss_pred chhh-HHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhh
Q 010904 89 LGEL-DLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVV 167 (497)
Q Consensus 89 ~g~~-~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 167 (497)
.|+. .++-...+.++.++.+.+.|+.|.|+.+.++...+..-.+..-+ .|-+.++....+.|+|.+..|...-
T Consensus 51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~------~N~y~~yfssallG~Gaallw~GqG 124 (461)
T KOG3098|consen 51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF------PNSYYLYFSSALLGFGAALLWTGQG 124 (461)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh------cchHHHHHHHHHhhhhHHheecccc
Confidence 3443 67778888899999999999999999999999999988877766 7888999999999999999999999
Q ss_pred hhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhhc---------Cc-ceee-------ehhhHHHHHHHHHH---
Q 010904 168 AVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEF---------GW-GWSF-------VLPGFLVIFVGVFV--- 227 (497)
Q Consensus 168 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---------gw-r~~f-------~~~~~~~~~~~~~~--- 227 (497)
.+++|..+++++.+..++..+....+.++|..+-..+... +- ++.+ .+.-+..++..+..
T Consensus 125 ~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~ 204 (461)
T KOG3098|consen 125 GYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSI 204 (461)
T ss_pred eehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998887665544321 11 1111 01111111111100
Q ss_pred HhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHH
Q 010904 228 FLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLY 307 (497)
Q Consensus 228 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (497)
.-.... |.... ..+. + ..+....+......+++++|+...+....+..+........
T Consensus 205 i~~~~~-p~~~~----~~~~---------~---------~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~ 261 (461)
T KOG3098|consen 205 INFDFL-PSKDV----VNCK---------S---------SSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWIS 261 (461)
T ss_pred hheeec-Cccch----hhhh---------h---------hccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHh
Confidence 001111 11000 0000 0 00001122334456778888888887777766666555555
Q ss_pred HHHHHHHHhhhcccCCC-cchhhHHHhhhhhhhhhhhhhhHHhHHhh---hhhhHHHHHHHHHHHHHHHHHhhccC----
Q 010904 308 WLPFYIRHTAVAGVHLS-HKTAGILSTIFDIGGVFGGILAGLISDMI---EARAVTSVAFLLLSIPALVLYRTYGS---- 379 (497)
Q Consensus 308 ~~~~~~~~~~~~~~g~s-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~---~~~~~~~~~~~~~~~~~~~~~~~~~~---- 379 (497)
..|..+.-... .+.+ ....+......+++.+++....+.+.+|. |+++.+.++..+..+.+++.....+.
T Consensus 262 iypt~i~ft~~--~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~ 339 (461)
T KOG3098|consen 262 IYPTCISFTRK--LGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPL 339 (461)
T ss_pred ccchhhhhhhh--ccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCC
Confidence 55555543300 1222 23344555667778888778788887664 67777777777776666665443221
Q ss_pred -----------chhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcc
Q 010904 380 -----------ISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLL 445 (497)
Q Consensus 380 -----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 445 (497)
++.....++.++.|+.-.......+..+....|.+ | ..+.++.-.-..++..++-+.
T Consensus 340 ~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~-~--------~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 340 RPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDD-R--------AQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred CCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-h--------HHHHHHHHHHHHHHHHHHhhh
Confidence 12446677778889988888888888888877432 2 455555555555555444433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-11 Score=118.81 Aligned_cols=168 Identities=21% Similarity=0.189 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHH
Q 010904 292 AFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPAL 371 (497)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 371 (497)
.+.+++............| .+++. +|++..+.|+..+...++..++.++.|+++||+|||+.+..+.++.+++.+
T Consensus 14 ~~~~~~~~~d~~~~~~~~~-~l~~~----~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 88 (412)
T TIGR02332 14 FILFIFSFLDRINIGFAGL-TMGKD----LGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAST 88 (412)
T ss_pred HHHHHHHHhhhhhHHHHHH-hhHhh----cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 3333444444445555555 45554 799999999999999999999999999999999999999888888888777
Q ss_pred HHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeec
Q 010904 372 VLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYIST 451 (497)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 451 (497)
+..+. ++.+.+++.-++.|++.+...+.....+.+.+|+ ++|+++.|+.+....+|..+++.+.+++.+
T Consensus 89 ~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~--------~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 157 (412)
T TIGR02332 89 ATMFA---TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPA--------YFRARANALFMIAMPVTMALGLILSGYILA 157 (412)
T ss_pred HHHHh---cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 76552 4566777777889999988888887888888886 345999999999999999999999887753
Q ss_pred ------c-CchHHHHHHHHHHHHHHHHHHHH
Q 010904 452 ------R-GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 452 ------~-g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
. ||+..|++.++..++..++..++
T Consensus 158 ~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~ 188 (412)
T TIGR02332 158 LDGLMALKGWQWLFLLEGFPSVILGVMTWFW 188 (412)
T ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHhhc
Confidence 2 89999999877766655544443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.2e-11 Score=117.50 Aligned_cols=172 Identities=9% Similarity=0.088 Sum_probs=132.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHH
Q 010904 288 VAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLS 367 (497)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 367 (497)
++.++...+...+.........|.+.++ +|.+..+.|++.+...++..++++..|++.||+|+|+.+..+..+.+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~-----~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~ 79 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQA-----FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYA 79 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 4455555666666665555777777554 79999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccc
Q 010904 368 IPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAG 447 (497)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g 447 (497)
++.++........+.+...+..++.|++.+...+...+.+.+..++ +++++..++.+....+|..++|.+.+
T Consensus 80 ~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~lG~~~g~~i~~ 151 (410)
T TIGR00885 80 LGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPE--------STATRRLNLAQSFNPFGSIIGMVVAQ 151 (410)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH--------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877654433334667777788888999888888888888777765 33478888888999999999998877
Q ss_pred eeecc---------------------------CchHHHHHHHHHHHHHHHHH
Q 010904 448 YISTR---------------------------GWNSVFFMLIVSILFAGMFL 472 (497)
Q Consensus 448 ~l~~~---------------------------g~~~~~~~~~~~~~~~~~~~ 472 (497)
.+... +|+.+|...+++.++..++.
T Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 152 QLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66321 48888888777666554433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.6e-12 Score=121.29 Aligned_cols=137 Identities=21% Similarity=0.376 Sum_probs=128.4
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCch-hhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccch
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRL-FLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWP 164 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 164 (497)
+.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.++.... ++.+.+.+..++.|++.+...+
T Consensus 210 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~ 284 (352)
T cd06174 210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-----PSLALLLVALLLLGFGLGFAFP 284 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHhccch
Confidence 888999999999999999999999999999999 9999999999999999887 8899999999999999999999
Q ss_pred hhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHH
Q 010904 165 CVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFV 227 (497)
Q Consensus 165 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~ 227 (497)
....++.|..|+++|++.+++......+|..+++.+.+.+. ..+|++.|++.+++.++..+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998 5799999999998887765543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.7e-12 Score=120.81 Aligned_cols=134 Identities=12% Similarity=0.018 Sum_probs=121.7
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Q 010904 76 GWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFC 155 (497)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~ 155 (497)
|.+ +.++|.+.+...++..+..++.+++.||+|+|+.+.++.+..++..++.+++ ++.+.+++.+++.
T Consensus 236 g~s-------~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~q~l~ 303 (382)
T TIGR00902 236 GIS-------ASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-----EAFPLIFLLQILH 303 (382)
T ss_pred CCC-------HhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-----hhHHHHHHHHHHH
Confidence 777 8999999999999999999999999999999999999999999999999988 9999999999999
Q ss_pred hhhhcccchhhhhhhhcccCcccchhhHHHHH-HHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHH
Q 010904 156 GLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWN-SHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFV 223 (497)
Q Consensus 156 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~ 223 (497)
|+..+...+....++.+. |+++|++..++++ ...++|..+|+.++|.+.+ .|+ ..|++.+.+.++.
T Consensus 304 g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T TIGR00902 304 CGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 999999999999999998 9999999999986 5788999999999999995 575 5677777776654
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-11 Score=117.33 Aligned_cols=164 Identities=22% Similarity=0.285 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHH--HHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHH
Q 010904 297 FSKLVAYTFLYWLPFY--IRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLY 374 (497)
Q Consensus 297 ~~~~~~~~~~~~~~~~--~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 374 (497)
...........+.|.+ +++. +|.++.+.++..+...++..++.++.|+++||++||+.+..+..+..++.++..
T Consensus 14 ~~~~~~~~~~~~~p~~~~i~~~----~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 89 (401)
T PRK11043 14 LSMLGFLATDMYLPAFKAIQAD----LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML 89 (401)
T ss_pred HHHHHHHHHHHHHhhHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 3333444444455544 3333 699999999999999999999999999999999999999888877776666554
Q ss_pred hhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-C
Q 010904 375 RTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-G 453 (497)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g 453 (497)
.. .+.+...+..++.|++.+...+.....+.+.++++ .++.+.+..+....++..++|.+.+++.+. +
T Consensus 90 ~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g 158 (401)
T PRK11043 90 WV---ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ--------KANRVFATIMPLVALSPALAPLLGAWLLNHFG 158 (401)
T ss_pred Hh---cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 42 45666666667777776665555566667777653 336778888888889999999999998887 9
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 010904 454 WNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
|+..|++.+++.++..+.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 159 WQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHc
Confidence 9999988877777665554433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.7e-11 Score=117.08 Aligned_cols=159 Identities=17% Similarity=0.257 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHH
Q 010904 289 APFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSI 368 (497)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 368 (497)
....+..+.............|.+.++ +|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~ 95 (426)
T PRK12307 21 FSAWLGYVFDGFDFMLIFYIMYLIKAD-----LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSV 95 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 334444444444555555555655555 699999999999999999999999999999999999999999888888
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccce
Q 010904 369 PALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGY 448 (497)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 448 (497)
+.+...+. .+.+..++.-++.|++.+..++.....+.+..|++ .++++.++......+|..+++.+.+.
T Consensus 96 ~~~~~~~~---~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~--------~r~~~~~~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 96 GTGLSGLA---SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH--------LKSKASAFLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred HHHHHHHH---hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh--------HhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence 77766553 46677778888899998888888888888888864 34899999999999999999998888
Q ss_pred eecc-CchHHHHHHHH
Q 010904 449 ISTR-GWNSVFFMLIV 463 (497)
Q Consensus 449 l~~~-g~~~~~~~~~~ 463 (497)
+.+. +|+..|++...
T Consensus 165 l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 165 FAEAYGWRAAFFVGLL 180 (426)
T ss_pred HcccCCHHHHHHHHHH
Confidence 8777 99999887543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.6e-12 Score=116.45 Aligned_cols=150 Identities=16% Similarity=0.211 Sum_probs=134.2
Q ss_pred cCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcc
Q 010904 321 VHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPY 400 (497)
Q Consensus 321 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 400 (497)
++.++...|++.....+...+.+++.|++.||++|++++.++..+..++.+...+. ..+|...++-.+.|++.....
T Consensus 63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs---~~Fwq~~l~R~~vGiGeAs~~ 139 (493)
T KOG1330|consen 63 FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS---NHFWQVLLCRGFVGIGEASYS 139 (493)
T ss_pred cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccchhhhc
Confidence 79999999999999999999999999999999999999999999999888887764 577888888899999999999
Q ss_pred hhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc--CchHHHHHHHHHHHHHHHHHHHHHhh
Q 010904 401 SLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFMLIVSILFAGMFLIRIVKA 478 (497)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (497)
+...+.+++.++.++| +++.++.+....+|..+|-...+.+.+. .|+++|...+++.++.+++..++.+.
T Consensus 140 ~ia~s~IaD~f~~~~R--------s~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 140 PIAPSLIADSFPDDKR--------SRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred ccchhHhhhcCcchhh--------hHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 9999999999998654 9999999999999999999888888887 59999999999999888887776654
Q ss_pred hhh
Q 010904 479 EIR 481 (497)
Q Consensus 479 ~~~ 481 (497)
..|
T Consensus 212 P~r 214 (493)
T KOG1330|consen 212 PER 214 (493)
T ss_pred ccc
Confidence 333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-11 Score=118.29 Aligned_cols=165 Identities=15% Similarity=0.158 Sum_probs=129.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHH
Q 010904 285 LPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFL 364 (497)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~ 364 (497)
+|.++.+.+..++............+....+ ++.++.+.+++.+.+.+...+..++.|+++||++||+++..+..
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~ 76 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKE-----LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANG 76 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHH
Confidence 4667777788887777665566666666655 58888899999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhc
Q 010904 365 LLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPL 444 (497)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 444 (497)
+.+++.+..... .+. ++..++.|++.+...+...+.+.+.+|++ ++++++|+.+....++..+||.
T Consensus 77 ~~~~~~~~~~~~---~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~--------~~~~a~~~~~~~~~~~~~~Gp~ 142 (393)
T PRK11195 77 IKLLGCLLMLFG---IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGE--------KLVKANGWMEGSTIAAILLGTV 142 (393)
T ss_pred HHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 877766554332 121 34456789998899999999999999874 4599999999999999999999
Q ss_pred ccceeeccCchHHHHHHHHHHHHH
Q 010904 445 LAGYISTRGWNSVFFMLIVSILFA 468 (497)
Q Consensus 445 ~~g~l~~~g~~~~~~~~~~~~~~~ 468 (497)
+.|++.+..+...+.+.+...+++
T Consensus 143 lgG~l~~~~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 143 LGGALADPHAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998876655555554444433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.8e-11 Score=114.46 Aligned_cols=171 Identities=15% Similarity=0.201 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHH-HHHHH
Q 010904 293 FCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLL-SIPAL 371 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~-~~~~~ 371 (497)
+..++...........+|.|+++. +|.|..+.|++.+...+..++.+++.|+++||+|||+.+....... .+..+
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~ 79 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEE----VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACL 79 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence 456667777777888899998876 8999999999999999999999999999999999988766544333 33333
Q ss_pred HHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeec
Q 010904 372 VLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYIST 451 (497)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 451 (497)
+... .++.+..++..++.|.+.+...+.......+..++++ |.++...+......++|..++|.+.+.+.+
T Consensus 80 ~~~~---~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~ 150 (375)
T TIGR00899 80 LFAW---NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQISLAWVIGPPLAFWLAL 150 (375)
T ss_pred HHHh---cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHHhHHHHHhhhHHHHHHH
Confidence 3333 2445555554455565555555555555555544321 222333677777788999999999999987
Q ss_pred c-CchHHHHHHHHHHHHHHHHHHHHH
Q 010904 452 R-GWNSVFFMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 452 ~-g~~~~~~~~~~~~~~~~~~~~~~~ 476 (497)
. +|+..|++.+++.++..+..++..
T Consensus 151 ~~~~~~~f~~~~~~~~~~~~~~~~~~ 176 (375)
T TIGR00899 151 GFGFTVMFLTAALAFVLCGVLVWLFL 176 (375)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 7 999999998887776665555433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.2e-11 Score=114.42 Aligned_cols=151 Identities=19% Similarity=0.245 Sum_probs=126.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHH
Q 010904 286 PRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLL 365 (497)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 365 (497)
+.++.+.+..++...........+|.+.++ +|.|..+.|++.+...++..++.++.|+++||+|||+.+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-----~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~ 80 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ-----EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLI 80 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 447777788888888888888999999998 699999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcc
Q 010904 366 LSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLL 445 (497)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 445 (497)
..++...... .++.+.+.+..++.|++.+...+.......+..++ ++++++++..+...++|..++|.+
T Consensus 81 ~~~~~~~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~g~~~ 149 (381)
T PRK03633 81 FAAGCAGLGL---MVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS--------RNRGRLLAAYMMVYYLGTVLGQLL 149 (381)
T ss_pred HHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877766554 24667777778888988877776666666666655 345999999999999999999999
Q ss_pred cceeecc
Q 010904 446 AGYISTR 452 (497)
Q Consensus 446 ~g~l~~~ 452 (497)
.+.+.+.
T Consensus 150 ~~~l~~~ 156 (381)
T PRK03633 150 VSKVSTE 156 (381)
T ss_pred Hhccccc
Confidence 9998775
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-12 Score=126.76 Aligned_cols=135 Identities=18% Similarity=0.156 Sum_probs=112.6
Q ss_pred CccchhhHHHHHHHHHHHHhhcccccccc--CCchhhHH--HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcc
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTI--DLRLFLVF--GMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSI 161 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~--~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 161 (497)
..+.+++.+...++..+++++.|+++||. ++|+...+ +.++.+++.+++... ++++.+++.+++.|++.+.
T Consensus 275 ~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-----~~~~~~~i~~~~~G~~~g~ 349 (455)
T TIGR00892 275 EYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA-----GDYTGLVIYCIFFGLSFGS 349 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh-----chHHHHHHHHHHHHHHhch
Confidence 88999999999999999999999999984 33433333 334444555556666 7889999999999999999
Q ss_pred cchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh-c-CcceeeehhhHHHHHHHH
Q 010904 162 GWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE-F-GWGWSFVLPGFLVIFVGV 225 (497)
Q Consensus 162 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~-gwr~~f~~~~~~~~~~~~ 225 (497)
..+...+++.|.+|++++++.+++++...++|..+||.+++.+.+ . +|++.|++.+++.++..+
T Consensus 350 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 350 VGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999998885 4 599999998887666543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-11 Score=121.59 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=120.1
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHh
Q 010904 56 IVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFG 135 (497)
Q Consensus 56 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~ 135 (497)
...|.+.+++ |.+ ....++......+...++.++.|+++||+|||+.++.+.++.+++.++.+
T Consensus 292 ~~~p~i~~~~----------g~~-------~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~ 354 (479)
T PRK10077 292 YYAPEIFKTL----------GAS-------TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 354 (479)
T ss_pred HHHHHHHHHc----------CCC-------CchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHH
Confidence 3457776766 665 55566777778888899999999999999999999999999999888776
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhhhcc-cchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh-------hc
Q 010904 136 LAYWLSVHLLVYFVGVQIFCGLFQSI-GWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL-------EF 207 (497)
Q Consensus 136 ~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-------~~ 207 (497)
........+. ....+.++.+++.+. ..|....+++|.+|+++|++++|+......+|..+++.+.+.+. +.
T Consensus 355 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~ 433 (479)
T PRK10077 355 TAFYTQAPGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF 433 (479)
T ss_pred HHHhcCcccH-HHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc
Confidence 5411111112 223334444444443 34677899999999999999999999999999998876655443 47
Q ss_pred CcceeeehhhHHHHHHHHHHHhheecCC
Q 010904 208 GWGWSFVLPGFLVIFVGVFVFLFLVVRP 235 (497)
Q Consensus 208 gwr~~f~~~~~~~~~~~~~~~~~~~~~p 235 (497)
+|++.|++.++++++..++.+++.||++
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 434 HNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred cCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 8999999998888887777766777654
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.5e-11 Score=118.69 Aligned_cols=160 Identities=18% Similarity=0.209 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHH
Q 010904 288 VAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLS 367 (497)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 367 (497)
+....+..++..+.........|.+.++ +|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 96 (496)
T PRK03893 22 FSAAWLGYLLDGFDFVLITLVLTEVQGE-----FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3344455555555555566666766655 79999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccc
Q 010904 368 IPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAG 447 (497)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g 447 (497)
++.++..+. .+.+...+..++.|++.+..++.....+.+.+++ +.++.+.++.+....+|..++|.+.+
T Consensus 97 ~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~g~~~~~~~~~ 165 (496)
T PRK03893 97 VGTLACGFA---PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPK--------HLRNKASGFLISGFSIGAVVAAQVYS 165 (496)
T ss_pred HHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666552 4667777888889998888888888888888886 44589999999999999999999999
Q ss_pred eeecc-CchHHHHHHHH
Q 010904 448 YISTR-GWNSVFFMLIV 463 (497)
Q Consensus 448 ~l~~~-g~~~~~~~~~~ 463 (497)
.+.+. +|+..|++..+
T Consensus 166 ~l~~~~~w~~~f~~~~~ 182 (496)
T PRK03893 166 LVVPVWGWRALFFIGIL 182 (496)
T ss_pred HHhccCCHHHHHHHHHH
Confidence 98887 99988876443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.5e-11 Score=113.92 Aligned_cols=160 Identities=13% Similarity=0.043 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccC
Q 010904 300 LVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGS 379 (497)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (497)
.....+...+|.+.++ +|.|+.+.|++.+.+.++..++++..|+++||+|||+.+......... ....... .
T Consensus 5 ~~~~~~~~~lp~i~~~-----~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~-~~~~~~~--~ 76 (368)
T TIGR00903 5 AIWVTFSPVLSLVAED-----IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAA-AAGRLLD--P 76 (368)
T ss_pred HHHHHHHhhHHHHHHH-----hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH-HHHHHHH--h
Confidence 3445566677877777 699999999999999999999999999999999988765544333323 2222121 1
Q ss_pred chhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHH
Q 010904 380 ISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVF 458 (497)
Q Consensus 380 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~ 458 (497)
.+...+++.-++.|++.+. .........+.+|+ ++|+++.++.+....+|..+++.+.+++.+. ||+..|
T Consensus 77 ~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~--------~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f 147 (368)
T TIGR00903 77 FNYEWLLACQLLAALGQPF-LLNAFAPAASQIRE--------ERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLI 147 (368)
T ss_pred ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 3667777778888888775 44455556777776 4459999999999999999999999998877 999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010904 459 FMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~ 476 (497)
...+++.++..++.....
T Consensus 148 ~~~~~l~~~~~~~~~~~l 165 (368)
T TIGR00903 148 IPIAAVAAAGIILVLAAL 165 (368)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 998888777665555443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-11 Score=117.30 Aligned_cols=157 Identities=15% Similarity=0.310 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchh
Q 010904 303 YTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISM 382 (497)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (497)
......+|.+.++ +|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++....... .+.
T Consensus 8 ~~~~p~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~---~~~ 79 (377)
T PRK11102 8 DMYLPALPVIAAD-----FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA---QTI 79 (377)
T ss_pred HHHhccHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH---ccH
Confidence 3445667777777 69999999999999999999999999999999999999988888888777766553 455
Q ss_pred HHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHH
Q 010904 383 ITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFML 461 (497)
Q Consensus 383 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~ 461 (497)
+...+..++.|++.+...+.....+.+..++ ++++++.++.+....+|..++|.+.+.+.+. +|+..|++.
T Consensus 80 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 80 DQLIYMRFLHGLAAAAASVVINALMRDMFPK--------EEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 6667777788888887777788888888775 4459999999999999999999999998887 999999888
Q ss_pred HHHHHHHHHHHHHH
Q 010904 462 IVSILFAGMFLIRI 475 (497)
Q Consensus 462 ~~~~~~~~~~~~~~ 475 (497)
+++.++..+.....
T Consensus 152 ~~~~~~~~~~~~~~ 165 (377)
T PRK11102 152 ALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHh
Confidence 87777665555444
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.8e-11 Score=114.60 Aligned_cols=156 Identities=18% Similarity=0.199 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchh
Q 010904 303 YTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISM 382 (497)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (497)
..+...+|.+.++ +|.++.+.+...+...++..++.++.|+++||+|||+.+..+.....++.+..... ++.
T Consensus 30 ~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~~~ 101 (406)
T PRK15402 30 DMIQPGMLAVVED-----FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA---QSI 101 (406)
T ss_pred hhHhcchHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---ccH
Confidence 3344455655555 69999999999999999999999999999999999999988887777776665442 456
Q ss_pred HHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHH
Q 010904 383 ITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFML 461 (497)
Q Consensus 383 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~ 461 (497)
+..+...++.|++.+...+.....+.+.++++ .++++.++......++..++|.+.+.+.+. +|+..|++.
T Consensus 102 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 102 EQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA--------DAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 66666777778877776677777777777763 336777888877888899999999988887 999999888
Q ss_pred HHHHHHHHHHHHH
Q 010904 462 IVSILFAGMFLIR 474 (497)
Q Consensus 462 ~~~~~~~~~~~~~ 474 (497)
+++.+++.+....
T Consensus 174 ~~~~~~~~~~~~~ 186 (406)
T PRK15402 174 AALAALSFFGLWR 186 (406)
T ss_pred HHHHHHHHHHHHH
Confidence 8877766554433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-10 Score=111.06 Aligned_cols=179 Identities=12% Similarity=0.122 Sum_probs=127.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHH
Q 010904 286 PRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLL 365 (497)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 365 (497)
|.++...+.........+......+.+-++. +|+|..+.+++.++..++..+.++..|++.||+|.|+++.++..+
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~----~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll 109 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIG----FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAI 109 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 4455555555555555555555555555534 799999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHhhc--cCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhh
Q 010904 366 LSIPALVLYRTY--GSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGP 443 (497)
Q Consensus 366 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 443 (497)
..+..+...+.. ..++.+.+++.-++.|++ +..++.....+.+.+|++ ++|++.|+....+++|..+++
T Consensus 110 ~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~--------~rG~A~Gi~~g~G~~G~~l~~ 180 (462)
T PRK15034 110 LIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA--------KQGSALGINGGLGNLGVSVMQ 180 (462)
T ss_pred HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh--------HhHHHHHHHHHHHhhHHHHHH
Confidence 877777665421 124677788888888887 667888888888888864 349999999766666666554
Q ss_pred cccceee-----c-------------c-CchHHHHHHHHHHHHHHHHHHHHHh
Q 010904 444 LLAGYIS-----T-------------R-GWNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 444 ~~~g~l~-----~-------------~-g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
.+...+. + . +++.+.++...+.+++.++.++..+
T Consensus 181 ~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~ 233 (462)
T PRK15034 181 LVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMN 233 (462)
T ss_pred HHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4433211 1 1 4677777777777666666555533
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.8e-11 Score=114.11 Aligned_cols=165 Identities=15% Similarity=0.189 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHH
Q 010904 293 FCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALV 372 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 372 (497)
....+...........+|.+.++ +|.|+.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+.
T Consensus 15 ~~~~~~~~~~~~~~p~~~~i~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~ 89 (394)
T PRK11652 15 LLVAVGQMAQTIYVPAIADMARD-----LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLV 89 (394)
T ss_pred HHHHHHHHHHHHHhccHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence 33334344444445556777766 6999999999999999999999999999999999999998888777776666
Q ss_pred HHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc
Q 010904 373 LYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR 452 (497)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 452 (497)
.... .+.+...+..++.|++.+...+.......+..+. +.++.+.++.+....++..++|.+.+.+.+.
T Consensus 90 ~~~~---~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 158 (394)
T PRK11652 90 ALFA---HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG--------TQLRHANSLLNMGILVSPLLAPLIGGLLTTL 158 (394)
T ss_pred HHHH---ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5442 4566666777777877665555444555555543 3447888888888899999999999988877
Q ss_pred -CchHHHHHHHHHHHHHHHHHH
Q 010904 453 -GWNSVFFMLIVSILFAGMFLI 473 (497)
Q Consensus 453 -g~~~~~~~~~~~~~~~~~~~~ 473 (497)
+|+..|++.++..++..+...
T Consensus 159 ~g~~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK11652 159 FGWRACYLFLLLLGAGVTFSMA 180 (394)
T ss_pred cChHHHHHHHHHHHHHHHHHHH
Confidence 999999888776665544433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-10 Score=114.03 Aligned_cols=157 Identities=15% Similarity=0.233 Sum_probs=114.9
Q ss_pred HHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhcc-CchhHH
Q 010904 306 LYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYG-SISMIT 384 (497)
Q Consensus 306 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 384 (497)
....| ++.+ .|++..+.++..+...++..++.++.|+++||+|+|+.+..+..+.++..+...+... ..+.+.
T Consensus 49 ~~~~p-~l~~-----~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 122 (452)
T PRK11273 49 ALAMP-YLVE-----QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAV 122 (452)
T ss_pred HHhhH-HHHH-----cCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHH
Confidence 34445 4555 3899999999999999999999999999999999999999888888777766554311 224555
Q ss_pred HHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhh-hhccccee-eccCchHHHHHHH
Q 010904 385 NIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAAL-GPLLAGYI-STRGWNSVFFMLI 462 (497)
Q Consensus 385 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~~~~~g~l-~~~g~~~~~~~~~ 462 (497)
.++..++.|++.+..++.....+.+.+++ +.+++++|+.+....+|+.+ +|.+...+ ...+|+..|++.+
T Consensus 123 ~~~~~~l~gi~~g~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~ 194 (452)
T PRK11273 123 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQ--------KERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPA 194 (452)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHhCCh--------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHH
Confidence 66667788888888777777777777775 44599999998888888754 44332222 2238999998887
Q ss_pred HHHHHHHHHHHHHH
Q 010904 463 VSILFAGMFLIRIV 476 (497)
Q Consensus 463 ~~~~~~~~~~~~~~ 476 (497)
++.++..++..++.
T Consensus 195 ~~~~~~~~l~~~~~ 208 (452)
T PRK11273 195 FAAILVALFAFAMM 208 (452)
T ss_pred HHHHHHHHHHHHHc
Confidence 77666555444443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-10 Score=101.28 Aligned_cols=185 Identities=14% Similarity=0.069 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccc
Q 010904 33 QITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGD 112 (497)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d 112 (497)
||..++......... ...+.++...|++++.+ |++ .+|...+.++..+|..+ +++.|.+.|
T Consensus 1 rW~~l~a~~~v~~~~-Gt~Y~Fs~yS~~Lk~~l----------~~s-------q~~l~~l~~~~~~G~~~-G~~~G~l~d 61 (250)
T PF06813_consen 1 RWLSLVASIWVQLCS-GTTYTFSAYSPQLKSRL----------GYS-------QSQLNTLSTAGDIGSYF-GILAGLLYD 61 (250)
T ss_pred ChhhHHHHHHHHHhc-CcccchhhhhHHHHHHh----------CCC-------HHHHHHHHHHHHHHhhc-cHHHHHHHH
Confidence 355544444444333 35677888999999999 888 99999999999999886 588999999
Q ss_pred ccCCchhhHHHHHHHHHHHHHHhhhhhhhh--hHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHh
Q 010904 113 TIDLRLFLVFGMMGSGLFTIIFGLAYWLSV--HLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHT 190 (497)
Q Consensus 113 r~Grr~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 190 (497)
++|+|.++++|.+...+|..+..++..... .++|.+.+..++.|.+.+....++.....+.|| ++||.+.|+.-...
T Consensus 62 ~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~ 140 (250)
T PF06813_consen 62 RFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFF 140 (250)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHH
Confidence 999999999999999999998887754433 478899988999998888887887787889997 68999999999999
Q ss_pred hhHHHHHHHHhhhHhhcCcceeeehhhHHHHHHHHHHHhheecCCcC
Q 010904 191 SIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPED 237 (497)
Q Consensus 191 ~~G~~~g~~~~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~ 237 (497)
+++..+-..+...+.+.+-...+.+.+....+..++..++++..|+.
T Consensus 141 GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~ 187 (250)
T PF06813_consen 141 GLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVPPS 187 (250)
T ss_pred HhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccCCc
Confidence 99998876666555533333334445555555556566667665543
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=112.51 Aligned_cols=149 Identities=13% Similarity=0.157 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchh
Q 010904 303 YTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISM 382 (497)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (497)
......+|...++ +|.|..+.++..+.+.++..++.++.|+++||+|||+.+..+..+.+++.+...+. ++.
T Consensus 26 ~~~~~~lp~i~~~-----~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a---~~~ 97 (393)
T PRK09705 26 TSVGPLLPQLRQA-----SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY---PQS 97 (393)
T ss_pred hccchhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC---cch
Confidence 3455667777766 79999999999999999999999999999999999999999999999998887763 566
Q ss_pred HHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc--CchHHHHH
Q 010904 383 ITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFM 460 (497)
Q Consensus 383 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~ 460 (497)
+.+++.-++.|++.+...+.....+.+.++ ++ ++.++|+......+|..+++.+.+++.++ +|+..+..
T Consensus 98 ~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~--------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 98 ALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR--------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc--------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 677778888899988877777777766664 22 38999999988889999999998888776 78887766
Q ss_pred HHHHHHHH
Q 010904 461 LIVSILFA 468 (497)
Q Consensus 461 ~~~~~~~~ 468 (497)
.++..++.
T Consensus 169 ~~~~~~~~ 176 (393)
T PRK09705 169 WALPAVVA 176 (393)
T ss_pred HHHHHHHH
Confidence 55554433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=112.44 Aligned_cols=143 Identities=21% Similarity=0.216 Sum_probs=114.2
Q ss_pred cCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcc
Q 010904 321 VHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPY 400 (497)
Q Consensus 321 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 400 (497)
+|.+..+.+...+.+.++..++.++.|+++||+|||+.+..+..+..++.++... .++.+.+++.-++.|++.+...
T Consensus 46 ~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~---a~~~~~l~~~r~l~Gi~~~~~~ 122 (413)
T PRK15403 46 FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF---TTSMTQFLIARFIQGTSICFIA 122 (413)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999998888777776666554 2566677777778888776544
Q ss_pred hhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHH
Q 010904 401 SLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIR 474 (497)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~ 474 (497)
+.......+.+++ +.+++++++.+....++..++|.+.+.+.+. +|+..|++.++..+++.+..+.
T Consensus 123 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 123 TVGYVTVQEAFGQ--------TKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHhcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566665 3347889999999999999999999888877 9999999988877776554443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-11 Score=120.11 Aligned_cols=132 Identities=14% Similarity=0.105 Sum_probs=104.4
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHH--HHhhhhhhhhhHHHHHHHHHHHhhhhhcccc
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTI--IFGLAYWLSVHLLVYFVGVQIFCGLFQSIGW 163 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~--~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 163 (497)
..+.+.+.+...++..++.++.|++.||+|||+.+..+..+..+..+ ...+. ..++.+.++...++.|++.+...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~ 330 (394)
T TIGR00883 254 ANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL---DSGSFTLFFFLVLGLALIGGMYT 330 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999999999999987766555444332 11121 11466777788889999988888
Q ss_pred hhhhhhhhcccCcccchhhHHH-HHHHhhhHHHHHHHHhhhHhh-cC-cceeeehhhHHH
Q 010904 164 PCVVAVLGNWFGKAKRGLIMGV-WNSHTSIGNIIGSVLASGVLE-FG-WGWSFVLPGFLV 220 (497)
Q Consensus 164 ~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~-~g-wr~~f~~~~~~~ 220 (497)
+...+++.|.+|+++|++++++ +.....+|..++|.+++.+.+ .| |++.++...+..
T Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 331 GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 9999999999999999999998 456677899999999999884 56 887766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-10 Score=112.75 Aligned_cols=181 Identities=17% Similarity=0.197 Sum_probs=148.4
Q ss_pred HHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHH
Q 010904 280 LEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVT 359 (497)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~ 359 (497)
+..+|+|.+..+.+...+.+++......-++.++.+. .-|+...+++.+...+..++.++++|.++||++||+++
T Consensus 4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~l-----t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrril 78 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQL-----TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRIL 78 (524)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 3568899999999999999888888777777777664 67889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh--hccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhh
Q 010904 360 SVAFLLLSIPALVLYR--TYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSV 437 (497)
Q Consensus 360 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 437 (497)
+..-++..+..+.+.. .....+.+.+++..++.|++.....|...+.+.+.+|+ ++...++++.+...++
T Consensus 79 i~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~--------~~L~~A~al~s~~~ni 150 (524)
T PF05977_consen 79 ILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK--------EDLPAANALNSISFNI 150 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--------hhHHHHHHHHHHHHHH
Confidence 8887776655444332 23345677778888899999989899999999999986 4558899999999999
Q ss_pred hhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHH
Q 010904 438 GAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLI 473 (497)
Q Consensus 438 g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 473 (497)
...+||.++|.+... |....|.+-++..++..++..
T Consensus 151 ar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~ 187 (524)
T PF05977_consen 151 ARIIGPALGGILVAFFGAAAAFLINALSFLISILALL 187 (524)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887 888888887776666544433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=116.30 Aligned_cols=159 Identities=18% Similarity=0.130 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhh--ccCch
Q 010904 304 TFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRT--YGSIS 381 (497)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 381 (497)
.+....|.+.++ +|++..+.|++.+.+.++..++.++.|+++||+|+|+.+..+.++.++..+.+... ....+
T Consensus 47 ~~~~~~~~i~~~-----~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 121 (467)
T PRK09556 47 NFKAAQNDMIST-----YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVS 121 (467)
T ss_pred ChhhhhHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccch
Confidence 344556776666 79999999999999999999999999999999999999888777776665554431 12346
Q ss_pred hHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc----CchHH
Q 010904 382 MITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR----GWNSV 457 (497)
Q Consensus 382 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~----g~~~~ 457 (497)
.+.+++.-++.|++.+...+.....+.+.+|+++| |+++|+.+....+|.++++.+..++.+. +|+..
T Consensus 122 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--------g~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~ 193 (467)
T PRK09556 122 LGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKR--------GRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM 193 (467)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHcCccce--------eeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence 67777777888999888888888999999987544 9999999999999999998887655443 57777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010904 458 FFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~ 475 (497)
|.+.+++.++..++.+.+
T Consensus 194 f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 194 FIFPSIIALIIGFIGLRY 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 777666666554444443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-10 Score=108.22 Aligned_cols=190 Identities=15% Similarity=0.169 Sum_probs=157.1
Q ss_pred HHhhCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhh-hhhhH
Q 010904 281 EAWKLPR-VAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMI-EARAV 358 (497)
Q Consensus 281 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~ 358 (497)
+.+++|+ ++.+...-+.--+.+|++-..+..|+...+.+++|+|..++.-++..+....-+..+++||++||+ |+|+.
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 4455544 556667777788999999999999999985545669999998888887777777889999999996 99999
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhh
Q 010904 359 TSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVG 438 (497)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 438 (497)
+..+.+++.++.+++.... ..+...+++.+.+++++.|..=+...+.+.+.+|+++. | +-..+++.....++|
T Consensus 95 I~lGail~~iGh~~L~~~~-~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp-----r-rD~gFt~fY~~iNiG 167 (498)
T COG3104 95 IVLGAILMAIGHLVLAISS-VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP-----R-RDGGFTLFYMGINIG 167 (498)
T ss_pred HHHHHHHHHHHHHHHhccc-cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc-----c-cCCCccEEEEEeehH
Confidence 9999999999998887631 12455677788888899999999999999999988763 4 456688999999999
Q ss_pred hhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHHHh
Q 010904 439 AALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 439 ~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
+.++|.+.+++.++ ||+..|...++-+.++.+.++..++
T Consensus 168 sl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 168 SLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999998 9999999999999998887776654
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.4e-10 Score=104.69 Aligned_cols=148 Identities=22% Similarity=0.276 Sum_probs=125.8
Q ss_pred cCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcc
Q 010904 321 VHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPY 400 (497)
Q Consensus 321 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 400 (497)
+|+|+.|.+++.++..+.+.+.+++.|.+.||+|.|++.....++..+..+.+.+.....+.+.++++-++.|+.- +.+
T Consensus 44 ~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~G-asF 122 (417)
T COG2223 44 FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAG-ASF 122 (417)
T ss_pred cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhccc-cee
Confidence 8999999999999999999999999999999999999999999999999888877665566667777777778664 556
Q ss_pred hhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-C---chHHHHHHHHHHHHHHHHHHHHH
Q 010904 401 SLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-G---WNSVFFMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g---~~~~~~~~~~~~~~~~~~~~~~~ 476 (497)
....+.++..+|+++ .|.+.|+.. .+|+|..+...+...+... + |+.+..+.....++..+..++..
T Consensus 123 av~m~~~s~~fP~~~--------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~ 193 (417)
T COG2223 123 AVGMPNASFFFPKEK--------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGM 193 (417)
T ss_pred hcccccccccCChhh--------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777788888998754 499999999 9999999999888888777 6 88888888888888777777765
Q ss_pred hh
Q 010904 477 KA 478 (497)
Q Consensus 477 ~~ 478 (497)
+.
T Consensus 194 ~d 195 (417)
T COG2223 194 ND 195 (417)
T ss_pred CC
Confidence 43
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-10 Score=107.97 Aligned_cols=179 Identities=16% Similarity=0.183 Sum_probs=148.5
Q ss_pred HHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHH
Q 010904 281 EAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTS 360 (497)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~ 360 (497)
+++.++....+.+...+.......+.+++=-++++ ++..+...|...+....+.++.-++.+++.+|+|+-+++.
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-----~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~ 440 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-----LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMY 440 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-----cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceee
Confidence 67888888888888888888888888888888888 4777788888888888999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhh-hhhh
Q 010904 361 VAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTG-SVGA 439 (497)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~ 439 (497)
++.....+=++..... .+.|..+..-++-|+..+..+..+.+++....||+. ++++.++..... .+|-
T Consensus 441 lgLa~~~~Rf~~~S~L---~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l--------~at~Q~l~~g~f~GlG~ 509 (618)
T KOG3762|consen 441 LGLACNVGRFLYYSYL---QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL--------RATAQGLLQGIFHGLGK 509 (618)
T ss_pred ehhhHHHHHHHHHHHh---cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc--------hHHHHHHHHHHhcccCc
Confidence 8887777766666553 677777888889999999999999999999999854 378888877554 7899
Q ss_pred hhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHH
Q 010904 440 ALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 440 ~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
.+|+.++|.+.+. +-+..|..+++.+++..+....+
T Consensus 510 g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 510 GLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred chhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988 88888888888877776665544
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=101.75 Aligned_cols=348 Identities=13% Similarity=0.020 Sum_probs=184.1
Q ss_pred CccchhhHHHHHHHHHHHHhhcccccc----ccCCchhh-HHHHHHHHHHHHHHhhhhhhh------------hhHHHHH
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGD----TIDLRLFL-VFGMMGSGLFTIIFGLAYWLS------------VHLLVYF 148 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l-~~~~~~~~i~~~~~~~~~~~~------------~~~~~~l 148 (497)
....+.+--.--+...+.+++.|..+| ||||||.+ ..+....+++.++.+++.+.. ......+
T Consensus 66 hk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~ 145 (498)
T KOG0637|consen 66 HKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLF 145 (498)
T ss_pred cccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHH
Confidence 555666655666667788999999999 58988754 455666677777777763221 1223344
Q ss_pred HHHHHHhhhhhcccchhhhhhhhcccCcccchh-hHHHHHHHhhhHHHHHHHHhhhHhhcCcceee--ehhhHHHHHHHH
Q 010904 149 VGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGL-IMGVWNSHTSIGNIIGSVLASGVLEFGWGWSF--VLPGFLVIFVGV 225 (497)
Q Consensus 149 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~g~~~~~~l~~~gwr~~f--~~~~~~~~~~~~ 225 (497)
+++-.+.=++.-.....+-+++.|...++++.+ +++.+.....+|..+|..++++. +|+-.| ...-.+-+.+..
T Consensus 146 ~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~---~~~~~~~Ft~~~~~~~~C~~ 222 (498)
T KOG0637|consen 146 ILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL---GLYKIFPFTLTTACDLYCAN 222 (498)
T ss_pred HHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc---CceEEeehHHHHHHHHHHHH
Confidence 455555555666777888999999998777776 99999999999999999888744 454433 333222222222
Q ss_pred HHHhheecCCcCC----CCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHh-h-CCchHHHHHHHHHHH
Q 010904 226 FVFLFLVVRPEDL----GFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAW-K-LPRVAPFAFCLFFSK 299 (497)
Q Consensus 226 ~~~~~~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 299 (497)
+-..+..|-+-.. ......++. +...+. .+. +....+..........+ + .|..|.+++...+.+
T Consensus 223 ~~~~~~~~v~L~~i~~~~~l~~~~~~----~~s~~~-----~~~-~~~~~~~~~~~e~fG~~~~mpr~m~~L~i~~lltW 292 (498)
T KOG0637|consen 223 LKLCFFLEVTLLLIETSESLWYPQEK----PLSPKG-----TTA-RSKSSKLPFLLEIFGALKVMPRPMRMLLIVTLLTW 292 (498)
T ss_pred HHHHHHHhhhhhheeccccccccccc----CCCCCc-----ccc-cccccCcchHHHHhchHhhCChhHHHHHHHHHHHH
Confidence 2222221111000 000000000 000000 000 00000000000111122 2 355788888889998
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcc---------------hhh-HHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHH
Q 010904 300 LVAYTFLYWLPFYIRHTAVAGVHLSHK---------------TAG-ILSTIFDIGGVFGGILAGLISDMIEARAVTSVAF 363 (497)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~g~s~~---------------~~g-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~ 363 (497)
+..+.+..|...++-+.. |+-++. +.| +=+.+..+...+.+....++.||+|-|+....+.
T Consensus 293 ~a~f~f~LF~TDfmG~~v---y~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~ 369 (498)
T KOG0637|consen 293 IAWFPFLLFDTDFMGREV---YGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGV 369 (498)
T ss_pred HHHHHHHHHHHHhcchHh---hCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehh
Confidence 888888888877776543 333221 112 2344556666667788889999999554443333
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhc--------------ccc-cccccccchhHHHH
Q 010904 364 LLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADL--------------GTQ-DLIKGNSRALATVT 428 (497)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~g~~~ 428 (497)
....++..+.... .+.+....-....|+..+.....-+..+...- +.. ....+..+-.|...
T Consensus 370 ~~f~~~~~~~gl~---~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~ 446 (498)
T KOG0637|consen 370 NAFGLATGLAGLV---LNTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAITFSIPFALASIEIGNSGLGQGLDL 446 (498)
T ss_pred HHHHHHHHHHhhh---hhHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCccccccccccccccccccCccCCCCcee
Confidence 3222222222211 12222222333333222222222211111110 000 00111123337788
Q ss_pred HHHhhhhhhhhhhhhcccceeecc
Q 010904 429 AIIDGTGSVGAALGPLLAGYISTR 452 (497)
Q Consensus 429 g~~~~~~~~g~~~~~~~~g~l~~~ 452 (497)
|+.|..-.+.+++.....|.+.+.
T Consensus 447 gvln~~I~ipQvivs~~~Gp~~~~ 470 (498)
T KOG0637|consen 447 GVLNCAIVIPQVLVSLGLGPLDQL 470 (498)
T ss_pred eeeeeeeeehhheeeccccchhhh
Confidence 888888888898888888888777
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.3e-10 Score=110.59 Aligned_cols=148 Identities=14% Similarity=0.158 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHH
Q 010904 288 VAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLS 367 (497)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 367 (497)
+..+.+..+...+.........|.+ ++. +|.++.+.|+..+.+.++..++.++.|++.||+|+|+.+..+..+..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i-~~~----~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~ 102 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQF-QQA----FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHH----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3445555666666666777778887 444 79999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccc
Q 010904 368 IPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAG 447 (497)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g 447 (497)
++.++.......++.+.+.+..++.|++.+...+.....+.+. +++ +.++..+++.+....+|..++|.+.+
T Consensus 103 ~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~-~~~-------~~~~~~~s~~~~~~~~G~~~g~~~g~ 174 (438)
T PRK10133 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL-GPE-------SSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-CCh-------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876653222245677788888899999988888888887764 332 22245678888888889988887765
Q ss_pred e
Q 010904 448 Y 448 (497)
Q Consensus 448 ~ 448 (497)
.
T Consensus 175 ~ 175 (438)
T PRK10133 175 S 175 (438)
T ss_pred H
Confidence 4
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-10 Score=111.42 Aligned_cols=130 Identities=11% Similarity=0.045 Sum_probs=111.7
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
..+.|.+.+...++..+..++.|++.||+|+|+.+..+.+..+++.++.+++ ++.+.+++..++.|++.+...+.
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~ 313 (382)
T PRK11128 239 ASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-----TALPWLIVIQILHCGTFTVCHLA 313 (382)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999888888877 89999999999999999988898
Q ss_pred hhhhhhcccCcccchhhHHHHH-HHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHH
Q 010904 166 VVAVLGNWFGKAKRGLIMGVWN-SHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIF 222 (497)
Q Consensus 166 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~ 222 (497)
...++.+. +++++++..+++. ...++|..+||.++|.+.+ .|+ ..|+..+++.++
T Consensus 314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 314 AMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 88888887 5667789899886 5667888999999999985 576 466666655544
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-10 Score=114.05 Aligned_cols=146 Identities=12% Similarity=0.084 Sum_probs=104.5
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
......+.....+...++.++.|+++||+|||+++..+.++..++.+...... ...++.+.+++..++.|++.+...+.
T Consensus 285 ~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 363 (438)
T PRK09952 285 RELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMAL-EAQSIFWIVFFSIMLANIAHDMVVCV 363 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566666778889999999999999998888776655443332210 01133455555667778888887888
Q ss_pred hhhhhhcccCcccchhhHHHHH-HHhhhHHHHHHHHhhhHhh-c--CcceeeehhhHHHHHHHHHHHhheec
Q 010904 166 VVAVLGNWFGKAKRGLIMGVWN-SHTSIGNIIGSVLASGVLE-F--GWGWSFVLPGFLVIFVGVFVFLFLVV 233 (497)
Q Consensus 166 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~-~--gwr~~f~~~~~~~~~~~~~~~~~~~~ 233 (497)
..+++.|.+|.+.|+...++.. .+..+|..++|.+.+++.+ . +|+..+...+++.++..+.. +.++|
T Consensus 364 ~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~ 434 (438)
T PRK09952 364 QQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKD 434 (438)
T ss_pred HHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHccc
Confidence 8999999999999998988854 4455899999999999875 2 48888887777776654444 44554
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-09 Score=103.56 Aligned_cols=156 Identities=12% Similarity=0.149 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhhhcccCCCcch-hhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHH
Q 010904 306 LYWLPFYIRHTAVAGVHLSHKT-AGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMIT 384 (497)
Q Consensus 306 ~~~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (497)
..+...++.+. +|++..+ .|.+...+..+..+..+++|+++||+|.|+.+..+.+..++..+++.+. .+...
T Consensus 45 ~s~a~p~L~~e----lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa---~Sl~~ 117 (511)
T TIGR00806 45 ESFITPYLLTV----LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG---TSVWH 117 (511)
T ss_pred HHHHHHHHHHH----cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 33444455555 8999999 9999999999999999999999999999999999998888888877763 56778
Q ss_pred HHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeeccCch---HHHHHH
Q 010904 385 NIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWN---SVFFML 461 (497)
Q Consensus 385 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~g~~---~~~~~~ 461 (497)
+.+.-++.|++.+..+ ....++...+|++ .|+++.|+.+....+|.++++++.+++...||+ ...++.
T Consensus 118 L~i~R~llGvaEA~~~-A~~syI~~WfP~k--------ER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Is 188 (511)
T TIGR00806 118 MQLMEVFYSVTMAARI-AYSSYIFSLVPPS--------RYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIIS 188 (511)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 8888899999999998 8889999999974 459999999999999999999999985444554 444455
Q ss_pred HHHHHHHHHHHHHHHh
Q 010904 462 IVSILFAGMFLIRIVK 477 (497)
Q Consensus 462 ~~~~~~~~~~~~~~~~ 477 (497)
.....++.++.+++.+
T Consensus 189 l~s~~~a~~~a~~LP~ 204 (511)
T TIGR00806 189 LVFMTFSVFLALFLKR 204 (511)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 5555566666666543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-09 Score=108.24 Aligned_cols=180 Identities=14% Similarity=0.063 Sum_probs=135.9
Q ss_pred HHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhh-----h
Q 010904 280 LEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMI-----E 354 (497)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----~ 354 (497)
.+..++|+.+......+............+|.++++. |.+..+.+.... ..... ++.++.+.++||+ |
T Consensus 6 l~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~-----g~~~~~ig~~~~-~~~~~-~~~~l~gpl~Dr~~~~~~G 78 (491)
T PRK11010 6 LRIFQQPNSAILLILGFASGLPLALTSGTLQAWMTVE-----NIDLKTIGFFSL-VGQAY-VFKFLWSPLMDRYTPPFLG 78 (491)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCHHHHHHHHH-HHHHH-HHHHHHHHHHHcccccCCC
Confidence 3455667777777777888888888888899999984 999999988632 33332 5789999999999 9
Q ss_pred hhhH-HHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhh
Q 010904 355 ARAV-TSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDG 433 (497)
Q Consensus 355 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 433 (497)
||+. +..+.+...++...+.+..+..+.+...+..++.+++.+...+...++..+.+|+++ ++.+.++...
T Consensus 79 rrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~--------rg~~~~i~~~ 150 (491)
T PRK11010 79 RRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE--------RGAGAAISVL 150 (491)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh--------hHHHHHHHHH
Confidence 8886 445555555555555443334456666667777788887777788888888888643 4999999999
Q ss_pred hhhhhhhhhhcccceeec-c-CchHHHHHHHHHHHHHHHHHHH
Q 010904 434 TGSVGAALGPLLAGYIST-R-GWNSVFFMLIVSILFAGMFLIR 474 (497)
Q Consensus 434 ~~~~g~~~~~~~~g~l~~-~-g~~~~~~~~~~~~~~~~~~~~~ 474 (497)
...+|..+++.+.+++.+ . ||+..|++.++..++..+..+.
T Consensus 151 g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 151 GYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL 193 (491)
T ss_pred HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999888 4 9999999988877766554443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-10 Score=103.25 Aligned_cols=148 Identities=15% Similarity=0.180 Sum_probs=132.4
Q ss_pred cCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcc
Q 010904 321 VHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPY 400 (497)
Q Consensus 321 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 400 (497)
.+-+..+.|++++...+.+++.+++.|.+.||+|+|..++++.+.+....+++.+ ..+++..++.=.+-|++.....
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf---g~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF---GNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH---cchhHHHHHHHHHhhhhHHHHH
Confidence 4566788999999999999999999999999999999999999999998888776 3677777788888899999999
Q ss_pred hhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHHHhh
Q 010904 401 SLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRIVKA 478 (497)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (497)
....+++++.+|+++ .||+++|+...+..+|-.+||+++|.+++. |++..|.+.++++++-..+.++...+
T Consensus 178 tsglamlAd~f~~d~-------er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDN-------ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred hhhHHHHHHHcccch-------hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence 999999999998864 359999999999999999999999999999 99999999999999988887776554
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-08 Score=94.76 Aligned_cols=327 Identities=15% Similarity=0.150 Sum_probs=184.2
Q ss_pred chhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhh
Q 010904 89 LGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVA 168 (497)
Q Consensus 89 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 168 (497)
.+.+.-+-.+...+..+.+.++.+|+..+.=+....+++.++.++.+++ ++.+.=+++-++.+++.|.....-..
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~-----~~v~~~l~Gv~las~ssg~GE~tfL~ 135 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS-----PSVWVRLLGVVLASLSSGLGEVTFLS 135 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec-----cchhHHHHHHHHHhhhhhhhHHHHHH
Confidence 4556666667777888888899999887666677777888899999998 99999899999999999988877777
Q ss_pred hhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhhcC--cceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhh
Q 010904 169 VLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFG--WGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKE 246 (497)
Q Consensus 169 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~g--wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 246 (497)
+ +..+++ ...+-+.++.+.+.++|+..-..+...| -|..+.+...+.++..+..++.+|.++........+.+
T Consensus 136 l-t~~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~ 210 (402)
T PF02487_consen 136 L-THFYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESE 210 (402)
T ss_pred H-HHhcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCC
Confidence 6 445653 3577788888888888887666665544 47777777777666655555566543322211111111
Q ss_pred hhhhhhccCCccccccccccccCCCCchhhhhHHHHhh-CCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcccCCC
Q 010904 247 VELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWK-LPRVAPFAFCLFFSKLVAYTFLY-WLPFYIRHTAVAGVHLS 324 (497)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s 324 (497)
. +.+++..+. +..+ .+.....+..+++.++ -|......+-.+..++..|.+.. ..|...-.. ...-.
T Consensus 211 ~----~~~~~~~~~---~~~~-~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~---~~~~~ 279 (402)
T PF02487_consen 211 D----EAEDDLLES---ETSE-SKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPN---SFFSP 279 (402)
T ss_pred C----ccccccccc---cccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCc---cCCCH
Confidence 0 000000000 0000 0001111122222211 12222233333333344443332 222222111 01122
Q ss_pred cchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHH
Q 010904 325 HKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLIT 404 (497)
Q Consensus 325 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 404 (497)
..+..++...+.+|..+++--...+ |+.+.+.+.+...+-.+..++-..+..-++.|..++.++.-|+..|..+....
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF 357 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTF 357 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3455566677777777765433222 33222222222222222111111111124667777788888999999999888
Q ss_pred HHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhccc
Q 010904 405 TAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLA 446 (497)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 446 (497)
..+.++.+++ +|..++|.....-.+|..++..+.
T Consensus 358 ~~I~~~~~~~--------~REFslg~vsvsds~GI~lAgll~ 391 (402)
T PF02487_consen 358 YRISEEVPPE--------DREFSLGAVSVSDSLGILLAGLLG 391 (402)
T ss_pred HHHHhcCCHH--------HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8888887764 447788888777777777666553
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=106.24 Aligned_cols=164 Identities=14% Similarity=0.059 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhh-----hhhh-HHHHHHHHH
Q 010904 293 FCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMI-----EARA-VTSVAFLLL 366 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----~~~~-~~~~~~~~~ 366 (497)
..++...........-+|.|+++ .|+|.++.|++...... .+..++.|+++||+ |||| ++..+..+.
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~-----~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~ 78 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTV-----EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGL 78 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHH
Confidence 44555666677777889999999 49999999998665554 57789999999999 7776 566666666
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhccc
Q 010904 367 SIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLA 446 (497)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 446 (497)
+++...+.+..+..+.+......++.+++.....+...+.+.+.+|++ +++++.++......+|..+++.+.
T Consensus 79 ~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~--------~r~~~~~~~~~g~~~g~i~g~~l~ 150 (402)
T PRK11902 79 AASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE--------ERGAGAAVKVLGYRLAMLVSGGLA 150 (402)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh--------hhhHHHHHHHHHHHHHHHHHhHHH
Confidence 666665554333344555555555667777777777888888888764 348999999988899999999988
Q ss_pred ceeecc--CchHHHHHHHHHHHHHHHH
Q 010904 447 GYISTR--GWNSVFFMLIVSILFAGMF 471 (497)
Q Consensus 447 g~l~~~--g~~~~~~~~~~~~~~~~~~ 471 (497)
+++.+. ||+..|++.+++.++..+.
T Consensus 151 ~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 151 LWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 888874 8999999988877665543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.6e-10 Score=112.26 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhccc
Q 010904 95 AFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWF 174 (497)
Q Consensus 95 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 174 (497)
...++..++.++.++++||+|||+.++++.++.+++.++.++..... ++...+...-+...++.....+....+.+|.+
T Consensus 343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 421 (502)
T TIGR00887 343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL-STHGFLAIYVLAQFFANFGPNATTFIVPGEVF 421 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence 34456666888999999999999999998888887776666541000 11111111111122222234456677789999
Q ss_pred CcccchhhHHHHHHHhhhHHHHHHHHhhhHhhc-----------CcceeeehhhHHHHHHHHHHHhheecCCc
Q 010904 175 GKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEF-----------GWGWSFVLPGFLVIFVGVFVFLFLVVRPE 236 (497)
Q Consensus 175 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-----------gwr~~f~~~~~~~~~~~~~~~~~~~~~p~ 236 (497)
|.+.|+++.++......+|..++|.+.+.+.+. ++...|++.+++.++..+ ..+++||++.
T Consensus 422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i-~~~~lpEt~~ 493 (502)
T TIGR00887 422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL-FTLLIPETKG 493 (502)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH-HheEeccCCC
Confidence 999999999999999999999999998888752 345567777777776544 4467787554
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.7e-10 Score=106.73 Aligned_cols=175 Identities=19% Similarity=0.195 Sum_probs=113.4
Q ss_pred hhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHH
Q 010904 283 WKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVA 362 (497)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~ 362 (497)
.|++.+|......++..+.......+.|.++++. .|+++++.|.+++...+..++.+++.|.++||++.||.++..
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~----~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~ 79 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQV----AGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWF 79 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccc----cCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHH
Confidence 4567889999999999999889999999999986 699999999999999999999999999999999977766544
Q ss_pred HHHHHH--HHHHHHhhcc--CchhH-HHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhh
Q 010904 363 FLLLSI--PALVLYRTYG--SISMI-TNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSV 437 (497)
Q Consensus 363 ~~~~~~--~~~~~~~~~~--~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 437 (497)
.....+ +.+......+ +.+.+ ..++..+..++...+..+..-+++.+. +|..+.-.|=....+++
T Consensus 80 i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~----------sr~~~feYG~~R~wGSi 149 (412)
T PF01306_consen 80 IAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERV----------SRRNGFEYGRARMWGSI 149 (412)
T ss_dssp HHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHH----------HHHHSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH----------HHHhcCCcchHHHHhhH
Confidence 333222 2222111110 11211 112222223333334333333332222 23335556667788899
Q ss_pred hhhhhhcccceeeccCchHHHHHHHHHHHHHHHH
Q 010904 438 GAALGPLLAGYISTRGWNSVFFMLIVSILFAGMF 471 (497)
Q Consensus 438 g~~~~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~ 471 (497)
|.+++..+.|.+.+.+....|++..+..++..++
T Consensus 150 g~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~ll 183 (412)
T PF01306_consen 150 GFAIASLLAGILFNINPNIIFWIASAAAIILLLL 183 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHH
Confidence 9999999999998877777788765554444433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-08 Score=95.34 Aligned_cols=336 Identities=11% Similarity=0.052 Sum_probs=188.3
Q ss_pred HHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhh----hhhh------hHHHHHHHHHHHhhhhhcc-cc
Q 010904 95 AFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAY----WLSV------HLLVYFVGVQIFCGLFQSI-GW 163 (497)
Q Consensus 95 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~~~------~~~~~l~~~r~l~G~~~~~-~~ 163 (497)
.-.+...+.++..|.+.||..|.+++..+.+..-++-.+++... .... ...+.+++.-.+.|.-.-. ..
T Consensus 46 ~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~ 125 (432)
T PF06963_consen 46 VRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASI 125 (432)
T ss_pred HHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 34445667788889999999999987777665544333332211 0000 1122222222233321111 12
Q ss_pred hhhhhhhhccc------CcccchhhHHHHHHHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhheec---
Q 010904 164 PCVVAVLGNWF------GKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFLVV--- 233 (497)
Q Consensus 164 ~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~--- 233 (497)
....+.-.||. +++.+.+.++.+.-.-.+.-+++|++.|.+.. .+.+....+.+...++..++=++++..
T Consensus 126 ~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~ 205 (432)
T PF06963_consen 126 ANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYN 205 (432)
T ss_pred hhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233345564 34556788888888888899999999999885 788877777777777765554444432
Q ss_pred -CCcCCCCCCChhhhhhhhhccCCcccccccccc-ccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 010904 234 -RPEDLGFELPGKEVELMNVENGDKVENEEVGLL-ESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPF 311 (497)
Q Consensus 234 -~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (497)
.|+-..+++.+++.. ..+..+.+.+....... ...+...+....|+..++.|.+ ...+...+.++...++......
T Consensus 206 ~~P~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vf-las~alalLY~TVLsf~~lmt~ 283 (432)
T PF06963_consen 206 SVPALAVKKRSSESES-SSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVF-LASFALALLYFTVLSFGGLMTA 283 (432)
T ss_pred hChHhcCCCCCccccc-cccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHH-HHHHHHHHHHHHHhcCcHHHHH
Confidence 222111111111100 00000000000000000 0000011122345566666644 4444444455555567778888
Q ss_pred HHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHH---HhhccCc----hhHH
Q 010904 312 YIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVL---YRTYGSI----SMIT 384 (497)
Q Consensus 312 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~ 384 (497)
|+... |+++...|..-+...+.++.+.++..++.+|+|..+.-.++......+..+. .+....+ +...
T Consensus 284 yl~~~-----G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~ 358 (432)
T PF06963_consen 284 YLKSQ-----GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYL 358 (432)
T ss_pred HHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHH
Confidence 99884 9999999999999999999999999999999998887666654433322221 1211111 2223
Q ss_pred HHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcc
Q 010904 385 NIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLL 445 (497)
Q Consensus 385 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 445 (497)
++....+.-++.-+.--.....++|.+|+++ ||+..|+-+..+++...+.-.+
T Consensus 359 l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~--------Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 359 LLGGIALSRIGLWSFDLAVTQIMQENVPESE--------RGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhcccCCHHH--------hhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444456667777788754 4999999998888877665433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-10 Score=113.89 Aligned_cols=146 Identities=10% Similarity=0.139 Sum_probs=121.4
Q ss_pred cCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcc
Q 010904 321 VHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPY 400 (497)
Q Consensus 321 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 400 (497)
++++..+.|.+.+.+.++.+++.++.|+++||+|+|+.+..+.++.++..++..... ..+.+..++.-++.|++.+..+
T Consensus 71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-GGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-HcCchHHHHHHHHHHHhcccch
Confidence 789999999999999999999999999999999999999888877777665543321 1345566777788999999999
Q ss_pred hhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc--CchHHHHHHHHHHHHHHHHHHHH
Q 010904 401 SLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
+....++.+.+|+ +.++++.|+.+....+|..++|.+.+.+.+. +|+..|++.++..++..++.+..
T Consensus 150 ~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 150 PATHKIIVKWAPP--------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred hhHHHHHHhcCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHH
Confidence 9999999999886 4459999999999999999999999998776 89999999888776665555444
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-10 Score=91.82 Aligned_cols=133 Identities=19% Similarity=0.303 Sum_probs=106.5
Q ss_pred HhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhc
Q 010904 332 STIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADL 411 (497)
Q Consensus 332 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 411 (497)
.....++.+++.++.+++.||++||+.+..+.....+..+..... .+.+......++.|++.+...+.......+..
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS---SNITVLIIARFLQGFGAAFALVAGAALIADIY 80 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence 455678888999999999999999999888877777666655442 45566667778888888887888888888888
Q ss_pred ccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHH
Q 010904 412 GTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 412 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
|++ +++++.++.+....++..++|.+.+.+.+. +|+..+.+.+...+++.+.....
T Consensus 81 ~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 81 PPE--------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred Chh--------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 764 448999999999999999999999999887 88888888877777666555443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.2e-10 Score=111.41 Aligned_cols=139 Identities=15% Similarity=0.110 Sum_probs=111.2
Q ss_pred hhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHH--HHHHHHHHHhhhhhcccchhhhh
Q 010904 91 ELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLL--VYFVGVQIFCGLFQSIGWPCVVA 168 (497)
Q Consensus 91 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~ 168 (497)
+......+....+.++.+++.||+|||+.+.++.++.+++.++..+. ++. +...+.-++.+++.+..++....
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV-----PVDLYFLRTALAVLGKFGITSAFQMVYL 433 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677888899999999999999999999998888877775 332 45555566677777777888899
Q ss_pred hhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhhcCcceeeehhhHHHHHHHHHHHhheecCCc
Q 010904 169 VLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLVVRPE 236 (497)
Q Consensus 169 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~ 236 (497)
+..|.+|.+.|+.++|+.+....+|.+++|.+.+ +.+.++..++++.+...++.+++ .+++||+..
T Consensus 434 ~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~lpet~~ 499 (505)
T TIGR00898 434 YTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGIL-TLFLPETKG 499 (505)
T ss_pred HhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHH-HHcCcCCCC
Confidence 9999999999999999999999999999999988 66667788888888877776554 456676543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-09 Score=120.07 Aligned_cols=183 Identities=14% Similarity=0.147 Sum_probs=122.6
Q ss_pred HHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-CcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhH
Q 010904 280 LEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHL-SHKTAGILSTIFDIGGVFGGILAGLISDMIEARAV 358 (497)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 358 (497)
+.++++++++.+....++..+..+....-++.+......+..+. +....++..+.+.+..++.++++|+++||++||++
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~ 84 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL 84 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH
Confidence 35678888887777766666554333222222211110000111 22456777888889999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhh
Q 010904 359 TSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVG 438 (497)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 438 (497)
+........+............+.+.+++..++.|++.+...+...+.+.+.+++++ ++.++|+.++...+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~--------~~~a~~~~~~~~~ig 156 (1140)
T PRK06814 85 AKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE--------LLGANALVEAGTFIA 156 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc--------cchhhHHHHHHHHHH
Confidence 543222211111111111112567788888999999999999999999999998744 489999999999999
Q ss_pred hhhhhcccceeecc-CchHHHHHHHHHHHHHHH
Q 010904 439 AALGPLLAGYISTR-GWNSVFFMLIVSILFAGM 470 (497)
Q Consensus 439 ~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~ 470 (497)
..+||.+.|++.+. +|...|...++..+++.+
T Consensus 157 ~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~ 189 (1140)
T PRK06814 157 ILLGTIIGGLATISGNFVILVALLMGIAVLGWL 189 (1140)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 99999999999887 888887444444444333
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.2e-09 Score=102.64 Aligned_cols=164 Identities=15% Similarity=0.101 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc--CCCcch---hhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHH
Q 010904 293 FCLFFSKLVAYTFLYWLPFYIRHTAVAGV--HLSHKT---AGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLS 367 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~---~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 367 (497)
+..++.......+....|...++. + +.+..+ .+..++...++..+++++.|+++||+|||+.+..+..+.+
T Consensus 29 ~~~~~~~~d~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~ 104 (432)
T PRK10406 29 SGNLVEWFDFYVYSFCSLYFAHIF----FPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMC 104 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334444444444444445444442 1 334443 3344455566666999999999999999999999998888
Q ss_pred HHHHHHHhhccCc-----hhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhh
Q 010904 368 IPALVLYRTYGSI-----SMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALG 442 (497)
Q Consensus 368 ~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 442 (497)
++.++..+..... +...+++.-++.|++.++.++...+++.|..|+++| |.+.++.......|..++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~r--------g~~~~~~~~~~~~G~~~~ 176 (432)
T PRK10406 105 FGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRK--------GFYASFQYVTLIGGQLLA 176 (432)
T ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcc--------cHHHHHHHHHHHHHHHHH
Confidence 8877765532111 123456667788999999999999999999987543 788887776666666666
Q ss_pred hcccceee---------ccCchHHHHHHHHHHHHH
Q 010904 443 PLLAGYIS---------TRGWNSVFFMLIVSILFA 468 (497)
Q Consensus 443 ~~~~g~l~---------~~g~~~~~~~~~~~~~~~ 468 (497)
+.+...+. +.||+..|++.++..++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 177 LLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 65433322 239999998766655543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-09 Score=118.71 Aligned_cols=160 Identities=13% Similarity=0.121 Sum_probs=120.1
Q ss_pred HHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC--cchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhH
Q 010904 281 EAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLS--HKTAGILSTIFDIGGVFGGILAGLISDMIEARAV 358 (497)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 358 (497)
..++++.++.+.+..++..+........+..++... ++.+ ....+++.+++.++.+++++++|+++||+|||+.
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~ 79 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKA----YDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRV 79 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH----cCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHH
Confidence 456777787777777776666655555454455443 4443 3446788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhh
Q 010904 359 TSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVG 438 (497)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 438 (497)
+..+.++..+..++........+.+.+++..++.|++.+...+...+++.+.+++++ ++.++|+......+|
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--------r~~~~~~~~~~~~ig 151 (1146)
T PRK08633 80 IRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN--------LSRANGLLEAFTIVA 151 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc--------chhhhhHHHHHHHHH
Confidence 887776555444443332222456777788888999999888888999999998744 499999999999999
Q ss_pred hhhhhcccceeecc
Q 010904 439 AALGPLLAGYISTR 452 (497)
Q Consensus 439 ~~~~~~~~g~l~~~ 452 (497)
..+++.+.+++.+.
T Consensus 152 ~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 152 ILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888654
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.4e-08 Score=85.31 Aligned_cols=339 Identities=14% Similarity=0.079 Sum_probs=180.0
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
+.++|.+.-+-+-..++...+.|.++|+-|||+.-+.-++.+.++++ .-.+ +.|-.++++|++-|+..+..+.+
T Consensus 71 kG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhS-----pqYkVLmVGR~LGGiaTsLLFSa 144 (454)
T KOG4332|consen 71 KGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHS-----PQYKVLMVGRVLGGIATSLLFSA 144 (454)
T ss_pred CCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcC-----CceEEEeehhhhhhHHHHHHHHH
Confidence 88888887777777888889999999999999987666666555443 2334 88999999999999999888777
Q ss_pred hhhh-hhcccCcccchhhHHHHH--------HHhhhHHHHHHHHhhhHhh---cCcceeeehhhHHHHHHHHHHHhheec
Q 010904 166 VVAV-LGNWFGKAKRGLIMGVWN--------SHTSIGNIIGSVLASGVLE---FGWGWSFVLPGFLVIFVGVFVFLFLVV 233 (497)
Q Consensus 166 ~~~~-i~~~~~~~~r~~~~~~~~--------~~~~~G~~~g~~~~~~l~~---~gwr~~f~~~~~~~~~~~~~~~~~~~~ 233 (497)
-.++ +.|.. ++|+.-.-+.. .++.+-.+++.+.+-.+.+ .|--.+|-..+.+..+...+. +..
T Consensus 145 FEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvi---l~~ 219 (454)
T KOG4332|consen 145 FESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVI---LSS 219 (454)
T ss_pred HHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH---Hhh
Confidence 6554 56655 34443222222 2223333444444444442 355556655433322222222 211
Q ss_pred CCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHH-HHHHHHH
Q 010904 234 RPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTF-LYWLPFY 312 (497)
Q Consensus 234 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 312 (497)
-.+......++++- ..+-+...+.+..++++.++-....+.-...+.+ ..|-|..
T Consensus 220 W~ENygdps~~kdl------------------------ltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaL 275 (454)
T KOG4332|consen 220 WSENYGDPSENKDL------------------------LTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL 275 (454)
T ss_pred hhhccCChhhhHHH------------------------HHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccC
Confidence 11111111111110 0011223345566666655544444433333333 2344432
Q ss_pred HHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhh--hHHHHHHHHHHHHHHHHHhh---cc-CchhHHHH
Q 010904 313 IRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEAR--AVTSVAFLLLSIPALVLYRT---YG-SISMITNI 386 (497)
Q Consensus 313 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~--~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~ 386 (497)
--+. .+.+ -|.+++.+.+..++|+-+..++..|-..| ..+.+.+....+...+.... .+ ..+...-.
T Consensus 276 spn~----e~iP---hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~ 348 (454)
T KOG4332|consen 276 SPND----EEIP---HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESL 348 (454)
T ss_pred CCCc----ccCC---chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHH
Confidence 2121 2332 37788888888888888887776664333 23333333333333332221 11 12233345
Q ss_pred HHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc--CchHHHHHHHHH
Q 010904 387 PLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFMLIVS 464 (497)
Q Consensus 387 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~~~ 464 (497)
+.++++-.+.|..+|.+.-.-.+.+|++.| ++.+-+...--++...++-... ...+. +-+..|.++.+.
T Consensus 349 i~F~~~E~cvGlfwPSimkmRsqyIPEear--------stimNfFRvPLnifvClvLynl-h~~~~p~~tr~mf~icS~~ 419 (454)
T KOG4332|consen 349 IGFCLFEACVGLFWPSIMKMRSQYIPEEAR--------STIMNFFRVPLNIFVCLVLYNL-HVDAFPTTTRNMFGICSAF 419 (454)
T ss_pred HHHHHHHHHHhhcchHHHHHHHhhCCHHHH--------hhhhhheechhhHhhhhhheec-ccccCccccchhhhhhHHH
Confidence 556666777788889988888888887443 4444333222222222221110 01111 556778777777
Q ss_pred HHHHHHHHHHH
Q 010904 465 ILFAGMFLIRI 475 (497)
Q Consensus 465 ~~~~~~~~~~~ 475 (497)
..++.+..-.+
T Consensus 420 ~~~a~i~~~~L 430 (454)
T KOG4332|consen 420 LFVASILQRRL 430 (454)
T ss_pred HHHHHHHHHHH
Confidence 77665554433
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.3e-09 Score=104.95 Aligned_cols=160 Identities=15% Similarity=0.103 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhcc---
Q 010904 302 AYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYG--- 378 (497)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--- 378 (497)
.+.+..+.+.. ++. +|++..+.+.+....... ....++.|++.||+|+|+++.++.++..++.++..+...
T Consensus 43 ~y~fsv~s~~L-~~~----lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i 116 (591)
T PTZ00207 43 MYAFNLISGAM-QAR----YNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI 116 (591)
T ss_pred HHHHHHHHHHH-HHH----hCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44555555654 444 799999999887663333 345667899999999999999999999998887766321
Q ss_pred CchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeeccCchHHH
Q 010904 379 SISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVF 458 (497)
Q Consensus 379 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~g~~~~~ 458 (497)
..+.+.+.+..++.|++.+..++.....+.+.+| ++||.+.|+......+|+++.+.+...+...+++..|
T Consensus 117 ~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp---------~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~f 187 (591)
T PTZ00207 117 EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP---------SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYF 187 (591)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 1356677777778888877777777777777775 2349999999999999998655554444445677777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010904 459 FMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~ 476 (497)
++.+++.++..++.+.+.
T Consensus 188 l~l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 188 FFLMSFALVVGILAIVFM 205 (591)
T ss_pred HHHHHHHHHHHHHHHhhe
Confidence 777777766666555543
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-09 Score=106.41 Aligned_cols=163 Identities=12% Similarity=0.162 Sum_probs=132.7
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCc--hhhHHHHHHHHHH
Q 010904 53 PPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLR--LFLVFGMMGSGLF 130 (497)
Q Consensus 53 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~i~ 130 (497)
.......+..+++ |++ ..+...+.-+..+...++++++|++.||+|.| ++++.+++++.+.
T Consensus 300 i~~~~~i~a~~~l----------g~s-------~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i 362 (477)
T PF11700_consen 300 IISFAGIYATEVL----------GMS-------TTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIII 362 (477)
T ss_pred HHHHHHHHHHHhc----------CcC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 3445556667788 888 88898888899999999999999999999999 8988888888666
Q ss_pred HHHHhhh---hhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh-
Q 010904 131 TIIFGLA---YWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE- 206 (497)
Q Consensus 131 ~~~~~~~---~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~- 206 (497)
.+...+. ...+.++-+.+.+.-++.|+..|..++...++.+|..|+++.+..+|++....-....+||++.+.+.+
T Consensus 363 ~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~ 442 (477)
T PF11700_consen 363 PLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDA 442 (477)
T ss_pred HHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555440 000127888999999999999999999999999999999999999999999999999999999999884
Q ss_pred c-CcceeeehhhHHHHHHHHHHHhheec
Q 010904 207 F-GWGWSFVLPGFLVIFVGVFVFLFLVV 233 (497)
Q Consensus 207 ~-gwr~~f~~~~~~~~~~~~~~~~~~~~ 233 (497)
. +-|+.+....++.++. ++.++.++.
T Consensus 443 tg~~r~g~~~l~~lf~~g-l~ll~~v~~ 469 (477)
T PF11700_consen 443 TGSQRYGFLFLLVLFLIG-LILLFFVDV 469 (477)
T ss_pred hCCchhHHHHHHHHHHHH-HHHHhhccc
Confidence 3 4888888777766554 444455543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-06 Score=83.55 Aligned_cols=260 Identities=8% Similarity=-0.012 Sum_probs=162.0
Q ss_pred CccchhhHHHHHHHHHHH-HhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhh---------------------
Q 010904 86 THRLGELDLAFLTSYSVG-MYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVH--------------------- 143 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~--------------------- 143 (497)
.+.+.++-+...+...+. .++.+++++|++|++++-+....+....+++++......+
T Consensus 42 ae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~ 121 (472)
T TIGR00769 42 AEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMG 121 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHH
Confidence 567899988888877776 8999999999999999888888887777777665211111
Q ss_pred -----HHHHHHHHHHHhhhhhcccch-hhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh---------cC
Q 010904 144 -----LLVYFVGVQIFCGLFQSIGWP-CVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE---------FG 208 (497)
Q Consensus 144 -----~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---------~g 208 (497)
+.|...+.-+...+-.....+ .-..++.|.++.+|-.|..++...+.++|.++++.+..++.+ ..
T Consensus 122 ~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~ 201 (472)
T TIGR00769 122 FIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDG 201 (472)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCh
Confidence 133333444444444444444 667889999999999999999999999999999988888762 12
Q ss_pred cc----eeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhh
Q 010904 209 WG----WSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWK 284 (497)
Q Consensus 209 wr----~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (497)
|. ..+.+.++.+++. +....++.+.....+...+.++ ..+.++++.....+++.+++
T Consensus 202 ~~~~~~~l~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~------------------~~~k~k~k~~~~es~k~i~~ 262 (472)
T TIGR00769 202 WHVSLKNLMVIVICSGLAI-ILLYWWVNRNVLTDPRSYNPAL------------------KEKKVKPKMSTMESLKFLVS 262 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCccccchhh------------------ccccCCCCCCHHHHHHHHHh
Confidence 31 2333333333333 3333343322211100000000 00111123334567888999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcc---hhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHH
Q 010904 285 LPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHK---TAGILSTIFDIGGVFGGILAGLISDMIEARAVTSV 361 (497)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~ 361 (497)
+|..+.+++...+++........-.-..+.+. +--+.+ -.|......++..++..++.+++.+|+|-+....+
T Consensus 263 S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~----~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i 338 (472)
T TIGR00769 263 SPYILDLALLVIAYGISINLVEVTWKSKLKAQ----YPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALI 338 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99888888888887777666665555555554 322211 22334445566666666777899999998877666
Q ss_pred HHHHHHH
Q 010904 362 AFLLLSI 368 (497)
Q Consensus 362 ~~~~~~~ 368 (497)
.-....+
T Consensus 339 ~Pii~li 345 (472)
T TIGR00769 339 TPLVMLL 345 (472)
T ss_pred HHHHHHH
Confidence 5554444
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-09 Score=105.53 Aligned_cols=121 Identities=16% Similarity=0.171 Sum_probs=102.7
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
..+.+++.+...++..++.+++++++||+|+|+++..+.++.+++.++..+. .++.+.+++..++.|++.+...+.
T Consensus 256 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~ 331 (437)
T TIGR00792 256 PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA----GSNLPLILVLIILAGFGQNFVTGL 331 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc----chhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888899999999999999999999999999998888887777664 146677788888999999998899
Q ss_pred hhhhhhcccC-------cccchhhHHHHHHHhhhHHHHHHHHhhhHhh-cCcc
Q 010904 166 VVAVLGNWFG-------KAKRGLIMGVWNSHTSIGNIIGSVLASGVLE-FGWG 210 (497)
Q Consensus 166 ~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~gwr 210 (497)
..++++|..+ ++++|.+.|+.+....+|..+++.+.+.+.+ .||.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 332 VWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999998865 4567999999999999999999999998874 5553
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-08 Score=98.13 Aligned_cols=190 Identities=12% Similarity=0.102 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccc
Q 010904 31 FHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHV 110 (497)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l 110 (497)
..|+...+.+.+...-..............+.++- |++ ..+..+......+...+..+++..+
T Consensus 266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~a----------G~~-------~~~a~~an~~~g~v~~~~t~~~~~l 328 (485)
T KOG0569|consen 266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTA----------GFT-------PEEAQYANLGIGIVNLLSTLVSPFL 328 (485)
T ss_pred chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444555556666666 777 8888899999999999999999999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhH-HH---HHHHHHHHhhhhhcc-cchhhhhhhhcccCcccchhhHHH
Q 010904 111 GDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHL-LV---YFVGVQIFCGLFQSI-GWPCVVAVLGNWFGKAKRGLIMGV 185 (497)
Q Consensus 111 ~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~---~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~ 185 (497)
.||+|||+.++.+..++.+..+++...-...... .| ..+++.++..++.+. .-|...-+.+|.+|++.|+.++++
T Consensus 329 id~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~ 408 (485)
T KOG0569|consen 329 IDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSV 408 (485)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHH
Confidence 9999999999999999999998887753222122 11 123344444333332 347778889999999999999999
Q ss_pred HHHHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhheecCCcCC
Q 010904 186 WNSHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDL 238 (497)
Q Consensus 186 ~~~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~ 238 (497)
.....-+...+-...-..+.+ .|- ..|.+..+++++..+..++.+||++.+.
T Consensus 409 ~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~ 461 (485)
T KOG0569|consen 409 ATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRT 461 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence 988888887776655555553 444 7888889999999999999999987543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.97 E-value=7e-09 Score=101.26 Aligned_cols=178 Identities=17% Similarity=0.090 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHH----hhhhhhHHHHHHH
Q 010904 289 APFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISD----MIEARAVTSVAFL 364 (497)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~~~~~~~~~~~~ 364 (497)
..+....+...+.+.....+++.|+++ +|.++...+.+.....+.+++..++.|+++| |+|||+..+....
T Consensus 7 i~~~~~~~Giq~~~~l~~~~l~~yl~~-----lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~ 81 (477)
T TIGR01301 7 LRVASVAAGVQFGWALQLSLLTPYVQE-----LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGA 81 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHH
Confidence 344445555566666777888888877 6999999999999999999999999999999 5999999877544
Q ss_pred HHHHHH-HHHHhhccC----------ch-h---HHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHH
Q 010904 365 LLSIPA-LVLYRTYGS----------IS-M---ITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTA 429 (497)
Q Consensus 365 ~~~~~~-~~~~~~~~~----------~~-~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 429 (497)
...+.. .++.+.... .+ . +..+..+.+..++.+...++..+.+.+.+|+++ |.++.+.+
T Consensus 82 ~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~------~~~~~a~~ 155 (477)
T TIGR01301 82 ALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDA------RRTRIANA 155 (477)
T ss_pred HHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchh------HHHHHHHH
Confidence 444333 333321110 00 0 223344445566777777888888999888753 34467899
Q ss_pred HHhhhhhhhhhhhhccccee--ec-------c-------CchHHHHHHHHHHHHHHHHHHHHHh
Q 010904 430 IIDGTGSVGAALGPLLAGYI--ST-------R-------GWNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 430 ~~~~~~~~g~~~~~~~~g~l--~~-------~-------g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
+.+....+|+.+++.+.+.. .+ . +++..|++.+++.+++.++.....+
T Consensus 156 ~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~ 219 (477)
T TIGR01301 156 YFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVK 219 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 98889999999998877653 11 0 5678888888877777776665543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-08 Score=100.45 Aligned_cols=179 Identities=19% Similarity=0.194 Sum_probs=118.9
Q ss_pred hCCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHH
Q 010904 284 KLPRVAPFAFCLFFSKLVAY----TFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVT 359 (497)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~ 359 (497)
++++++..+....+.....+ .....++...++ .|-+ ....++.....++..++.++.|+++|.+|||..+
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~d-----iG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~ 111 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINAD-----IGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFF 111 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh-----cCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Confidence 44555544433333332222 223344555555 4555 4556777788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhh
Q 010904 360 SVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGA 439 (497)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 439 (497)
+.+.++..++.++... .++....+....+.|++.+.. ......++|.+|. |.|....++.....-...
T Consensus 112 i~g~~l~vvG~Iv~at---A~~~~~~iag~~l~GvgaG~~-~~~~~~isEl~p~--------k~R~~~~~~~~~~~i~~~ 179 (599)
T PF06609_consen 112 IIGSLLGVVGSIVCAT---AQNMNTFIAGMVLYGVGAGVQ-ELAALAISELVPN--------KWRGLGLAIASIPFIITT 179 (599)
T ss_pred HHHHHHHHhHHHHhhc---CCcHHHHHHHHHHHHHhhHHH-HHHHHHHHHhccc--------chhhhHhHHHHHHHHhhh
Confidence 9999888888877765 356677788888888875444 3445567788875 344555555554444444
Q ss_pred hhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010904 440 ALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRIVKAEI 480 (497)
Q Consensus 440 ~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (497)
..+|.+...+..+ +|++.|++..+...++.+...+++++..
T Consensus 180 ~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~ 221 (599)
T PF06609_consen 180 WISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPP 221 (599)
T ss_pred cccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4566666555444 9999999998888777766665554433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.6e-09 Score=100.26 Aligned_cols=155 Identities=20% Similarity=0.168 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhh-----hhhhHH-HHHHHHHHHHHHHHHhhc
Q 010904 304 TFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMI-----EARAVT-SVAFLLLSIPALVLYRTY 377 (497)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----~~~~~~-~~~~~~~~~~~~~~~~~~ 377 (497)
......|.+.++ .|+|..+.|+.... .+...+ .++.|+++||+ ||||.+ ..+....++....+.+..
T Consensus 6 ~~~~~~~~~~~~-----~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~ 78 (356)
T TIGR00901 6 LVGNTLPYWLRS-----KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV 78 (356)
T ss_pred hHHhHHHHHHHH-----cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC
Confidence 344567888887 59999999998654 444444 88999999998 788875 445555555544444433
Q ss_pred cCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-C---
Q 010904 378 GSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-G--- 453 (497)
Q Consensus 378 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g--- 453 (497)
+..+.+......++.+++.....+...+++.+.+|++ +|+.+.|+......+|..+++.+.+.+.+. +
T Consensus 79 ~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~ 150 (356)
T TIGR00901 79 PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE--------ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT 150 (356)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh--------hhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 3334444555555666666666677788888888764 448999999999999999999998888766 6
Q ss_pred -----chHHHHHHHHHHHHHHHHHH
Q 010904 454 -----WNSVFFMLIVSILFAGMFLI 473 (497)
Q Consensus 454 -----~~~~~~~~~~~~~~~~~~~~ 473 (497)
|+..|++.++..+++.+..+
T Consensus 151 ~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 151 GLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999888887766554443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-08 Score=97.50 Aligned_cols=158 Identities=13% Similarity=0.118 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHH-hh-----hhhhhhhhhhhhHHhHHhhhhhhHHHHH
Q 010904 289 APFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILS-TI-----FDIGGVFGGILAGLISDMIEARAVTSVA 362 (497)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~-~~-----~~~~~~~~~~~~g~l~dr~~~~~~~~~~ 362 (497)
....+..++.......+....|...++ ++.++.+.+... +. ..++..++.++.|+++||+|||+.+..+
T Consensus 18 ~~~~~~~~~~~~d~~~~~~~~~~i~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~ 92 (434)
T PRK15075 18 LRVTSGNFLEMFDFFLFGFYATAIAKT-----FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT 92 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence 445566666777777777778877666 577766644332 21 1223346788999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCchhH--------HHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhh
Q 010904 363 FLLLSIPALVLYRTYGSISMI--------TNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGT 434 (497)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 434 (497)
..+..++.++..+. ++.. .+++.-++.|++.+...+....++.|.+|+++| +++.++.+..
T Consensus 93 ~~~~~~~~~l~~~~---~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~r--------g~~~~~~~~~ 161 (434)
T PRK15075 93 LSIMASGTLLIAFV---PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRK--------GFYTSWQSAS 161 (434)
T ss_pred HHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccc--------hHHHHHHHHH
Confidence 98888877776653 2222 245566778888888888888889999987544 8999988887
Q ss_pred hhhhhhhhhcccceee--------cc-CchHHHHHHH
Q 010904 435 GSVGAALGPLLAGYIS--------TR-GWNSVFFMLI 462 (497)
Q Consensus 435 ~~~g~~~~~~~~g~l~--------~~-g~~~~~~~~~ 462 (497)
.+++..+++.+.+.+. +. ||+..|++..
T Consensus 162 ~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 162 QQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 7777776666555431 23 8999988644
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-09 Score=105.04 Aligned_cols=141 Identities=17% Similarity=0.250 Sum_probs=105.9
Q ss_pred CCCCCCCCCCCccchhhHHHHHH-HHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhh-hhhhhhhHHHHHHHHHH
Q 010904 76 GWAPFNGPDGTHRLGELDLAFLT-SYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGL-AYWLSVHLLVYFVGVQI 153 (497)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-~~~~~~~~~~~l~~~r~ 153 (497)
|++ .+++|++...... ...++.++.|++.||+|+|+.+..+.++.++..+.... ......++.+.+.....
T Consensus 239 G~s-------~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (390)
T TIGR02718 239 GWP-------LEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSA 311 (390)
T ss_pred CCC-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHH
Confidence 787 8999999887764 66677899999999999999988877766443332221 10000123344455556
Q ss_pred HhhhhhcccchhhhhhhhcccCc-ccchhhHHHHHHHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHH
Q 010904 154 FCGLFQSIGWPCVVAVLGNWFGK-AKRGLIMGVWNSHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFV 223 (497)
Q Consensus 154 l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~ 223 (497)
+.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+.+ .||+..|++.+++.++.
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 312 FGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 66777777777777887777776 789999999999999999999999999985 79999998877766554
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.9e-08 Score=87.09 Aligned_cols=392 Identities=14% Similarity=0.116 Sum_probs=234.8
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccC-CCCCCCCCCCCCCCCCCCCCCCCCccc-hhhHHHHHHHHHHHHhhcccccc
Q 010904 35 TALVITFFAYASFHASRKPPSIVKSVLG-PTFDGSNLRSNDPGWAPFNGPDGTHRL-GELDLAFLTSYSVGMYFAGHVGD 112 (497)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~s~~~~~~~~~~~~~g~l~d 112 (497)
....+|..+++-.+ +..=+.+.|++. .+. +++ ..++ .-+.-...-.+.+.-++.=.+.|
T Consensus 7 ~~~llC~yG~~~e~--RPseP~~tpyl~gp~~----------NlT-------~~~l~~evyPvwTYSYLv~LvpvFlLTD 67 (433)
T KOG3810|consen 7 ITCLLCLYGFVREF--RPSEPYLTPYLLGPDK----------NLT-------EDQLTNEVYPVWTYSYLVGLVPVFLLTD 67 (433)
T ss_pred hhhhhhhhhHHHHh--CCCCCccchhccCCCC----------Ccc-------HHHHhcccccchhHHHHHHHHHHHHHhh
Confidence 34445555555443 555566666665 332 444 2222 12223333445555556666889
Q ss_pred ccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhh
Q 010904 113 TIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSI 192 (497)
Q Consensus 113 r~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 192 (497)
..--|++++.-.+.....-.+.-+. ++.+.+=+.-++.|...+.. .+-++++-+..+++++.++.+...++.-.
T Consensus 68 ~lrYKPvivlq~ls~v~~w~~lv~g-----~sV~~mQvlE~FyG~~tAaE-IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~ 141 (433)
T KOG3810|consen 68 YLRYKPVVVLQALSGVPVWIMLVFG-----PSVKAMQVLEFFYGPATAAE-IAYYSYIYSKVDPEMYKRVTGYCRAAFLV 141 (433)
T ss_pred hhhcceeeeeeccchhHHHHHHHhc-----CCchheeeehhhcChHHHHH-HhhhheeeeecCHHHHHHHHHHhHHHHHH
Confidence 8888998888777777777777777 89999988899999876554 66788999999999999999999999999
Q ss_pred HHHHHHHHhhhHhhcCcceeeeh--hhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCC
Q 010904 193 GNIIGSVLASGVLEFGWGWSFVL--PGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGS 270 (497)
Q Consensus 193 G~~~g~~~~~~l~~~gwr~~f~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (497)
|-.+|..++..+...+|-.-+.+ ..+....++....+++|..++..-.+.++++. ...+.++..... +..+
T Consensus 142 g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~------~v~~~e~~~~~~-~~~~ 214 (433)
T KOG3810|consen 142 GKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKI------SVGDLEEMNPQA-SYMS 214 (433)
T ss_pred HhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccc------eeccchhcCccc-hhhH
Confidence 99999999888875433322222 23333444455666777655433222222211 011111100000 0000
Q ss_pred ----CCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhh
Q 010904 271 ----SGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILA 346 (497)
Q Consensus 271 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~ 346 (497)
....-...+.+..+||++..-.+.+.+....++....+.-..-.+.- -.-.....|..-++..+.++++.+..
T Consensus 215 ~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~---~~~~~vyNG~veAv~tlLGa~~~~~~ 291 (433)
T KOG3810|consen 215 YLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVA---PNPANVYNGAVEAVSTLLGAIAALAA 291 (433)
T ss_pred HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhC---CCchhhhcCHHHHHHHHHHHHHHHHH
Confidence 00111234455667888766666666665566555555544444430 01122334566677778888888889
Q ss_pred HHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHH
Q 010904 347 GLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALAT 426 (497)
Q Consensus 347 g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 426 (497)
|.+.-.+.|..-+.+.......+.+++.. ....+.|+.++...++........++....+++.... +..|.
T Consensus 292 g~l~i~w~r~g~~ll~~~s~~~agllf~m-~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~--------e~~gL 362 (433)
T KOG3810|consen 292 GYLNINWNRWGDLLLAVGSAVQAGLLFIM-AQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSS--------ELFGL 362 (433)
T ss_pred HheeeccchhhHHHHHHHHHHhhhhhhhh-hcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhh--------hhhee
Confidence 98877776664444443333333333333 3346678888888888888777777777777777764 44588
Q ss_pred HHHHHhhhhhhhhhhhhcccceeecc------------CchHHHHHHHHHHHHHHHHHH
Q 010904 427 VTAIIDGTGSVGAALGPLLAGYISTR------------GWNSVFFMLIVSILFAGMFLI 473 (497)
Q Consensus 427 ~~g~~~~~~~~g~~~~~~~~g~l~~~------------g~~~~~~~~~~~~~~~~~~~~ 473 (497)
.+|++.++.-+-..+-..+ +.|. -|..-|.+.+++.++......
T Consensus 363 vFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~ 418 (433)
T KOG3810|consen 363 VFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEY 418 (433)
T ss_pred eeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHH
Confidence 8888777666555554443 3332 245567777777777765533
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.2e-09 Score=108.62 Aligned_cols=147 Identities=14% Similarity=0.245 Sum_probs=117.4
Q ss_pred cCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhc-----------------------
Q 010904 321 VHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTY----------------------- 377 (497)
Q Consensus 321 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 377 (497)
++++..+.|++.+.+.++..++.++.+++.||.+||+++.++.++++++.++..+..
T Consensus 63 F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~ 142 (633)
T TIGR00805 63 FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANS 142 (633)
T ss_pred hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccccc
Confidence 799999999999999999999999999999999999999999999888887765431
Q ss_pred -----c--------------------CchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHh
Q 010904 378 -----G--------------------SISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIID 432 (497)
Q Consensus 378 -----~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 432 (497)
. ......+++.-++.|++.+..++...+++.+.+|+++ ++...|+.+
T Consensus 143 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~--------~~~~~~i~~ 214 (633)
T TIGR00805 143 FLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN--------SPLYIGILE 214 (633)
T ss_pred ccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccc--------cHHHHHHHH
Confidence 0 0013345577889999999999999999999988744 499999999
Q ss_pred hhhhhhhhhhhcccceeecc-----------------------CchHHHHHHHHHHHHHHHHHHHH
Q 010904 433 GTGSVGAALGPLLAGYISTR-----------------------GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 433 ~~~~~g~~~~~~~~g~l~~~-----------------------g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
....+|..+|+.+.+++.+. .|+..|++.+++.++..+..+.+
T Consensus 215 ~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 215 SIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999988876542 15566777776666655544433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.3e-09 Score=93.89 Aligned_cols=118 Identities=21% Similarity=0.310 Sum_probs=96.2
Q ss_pred CCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcch
Q 010904 322 HLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYS 401 (497)
Q Consensus 322 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 401 (497)
+.+....|++-+.+.++..+.++..|.++||+|||.++..+....++..++... ..+...++..=++.|++- +...
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~---S~~F~afv~aR~l~Gi~k-gnl~ 139 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL---SRNFAAFVLARFLGGIFK-GNLS 139 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhcc-CchH
Confidence 446678899999999999999999999999999999999998888886666554 244433334456677665 5567
Q ss_pred hHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeec
Q 010904 402 LITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYIST 451 (497)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 451 (497)
+..++++|.+++ ++++.+++.++....+|.++||.++|++..
T Consensus 140 v~rAiisdV~se--------k~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 140 VIRAIISDVVSE--------KYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHhhcCh--------hhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 788999999887 444899999999999999999999999877
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=98.25 Aligned_cols=145 Identities=15% Similarity=0.132 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHH
Q 010904 305 FLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMIT 384 (497)
Q Consensus 305 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (497)
....+|.+.++ +|.+..+.++..+...++..++.++.|+++||+|+|+.+..+..+..++.+.. . .++.+.
T Consensus 19 ~~~~lp~l~~~-----~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~---~~~~~~ 89 (355)
T TIGR00896 19 VGPLLPQIRSA-----LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S---APGTAL 89 (355)
T ss_pred CcccHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H---hccHHH
Confidence 34567777776 69999999999999999999999999999999999999988877766655444 2 234555
Q ss_pred HHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc---CchHHHHHH
Q 010904 385 NIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR---GWNSVFFML 461 (497)
Q Consensus 385 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---g~~~~~~~~ 461 (497)
.++..++.|++.+...+.......+..+ ++++++.++.+....+|..+++.+.+.+.+. +|+..|...
T Consensus 90 l~~~~~~~g~g~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~ 160 (355)
T TIGR00896 90 LFAGTALIGVGIAIINVLLPSLIKRDFP---------QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWW 160 (355)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHhCc---------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 5666667777766655555555555543 2348999999999999999999998888765 388777766
Q ss_pred HHHHHH
Q 010904 462 IVSILF 467 (497)
Q Consensus 462 ~~~~~~ 467 (497)
+++.++
T Consensus 161 ~~~~~~ 166 (355)
T TIGR00896 161 ALPALL 166 (355)
T ss_pred HHHHHH
Confidence 654443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-08 Score=92.24 Aligned_cols=169 Identities=16% Similarity=0.129 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHh
Q 010904 296 FFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYR 375 (497)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 375 (497)
|+.+.........+...+++. ++++..+++++......+..+.++..+++.+|+|+|+-++.+..++++++.+++.
T Consensus 22 Ffl~G~~~~l~diLip~l~~~----f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~p 97 (422)
T COG0738 22 FFLWGFITCLNDILIPHLKEV----FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWP 97 (422)
T ss_pred HHHHHHHhhcchhhHHHHHHH----hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence 333334445555556666777 8999999999999999999999999999999999999999999999999998876
Q ss_pred hccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc---
Q 010904 376 TYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR--- 452 (497)
Q Consensus 376 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--- 452 (497)
.....++..++..+++.+.+.+.......+++...-+++ ....-+.+.+.++.+|++++|.+++++...
T Consensus 98 Aa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~--------~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~ 169 (422)
T COG0738 98 AASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPE--------SAAFRLNLAQAFNGLGAILGPLLGSSLILSGVA 169 (422)
T ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch--------hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Confidence 555566777778888899998888888888888777663 225667888899999999999999888761
Q ss_pred -----------------CchHHHHHHHHHHHHHHHHHHHHH
Q 010904 453 -----------------GWNSVFFMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 453 -----------------g~~~~~~~~~~~~~~~~~~~~~~~ 476 (497)
.++.++..++...++..+.....+
T Consensus 170 ~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k 210 (422)
T COG0738 170 LTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSK 210 (422)
T ss_pred hccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 356666666666665555444433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.5e-09 Score=97.59 Aligned_cols=125 Identities=22% Similarity=0.282 Sum_probs=100.8
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
+.+.++..+.+..++.++.+..+++.||+|+|+++.++..+..++.++.... ++... ...-++.|++.+..+|.
T Consensus 177 ~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-----~~~~~-~~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 177 EDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-----HGYVA-MWFVLALGLFNSIMFPT 250 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-----CCHHH-HHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999988888888777666554 33322 23455789999999999
Q ss_pred hhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh-cCcceeeehhhH
Q 010904 166 VVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE-FGWGWSFVLPGF 218 (497)
Q Consensus 166 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~ 218 (497)
..+...+..|+ +.+.+.++. ....+|..++|++.|.+.+ .|.+..|++..+
T Consensus 251 ~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 251 IFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999998874 456667775 5667899999999998885 788888775443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.4e-09 Score=101.25 Aligned_cols=145 Identities=14% Similarity=0.268 Sum_probs=116.1
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHH----HHHHHHHhhhhhcc
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVY----FVGVQIFCGLFQSI 161 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----l~~~r~l~G~~~~~ 161 (497)
....+.+.+...+.-...-...+++..|+|.|+++.++.+.+++=..+.+.. .++.+. .++...++|+..+.
T Consensus 242 ~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~----~~~~~~~~~~~~l~q~lhG~tf~~ 317 (400)
T PF03825_consen 242 GSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF----SDPWPFIVALQLLGQLLHGLTFGL 317 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHhhhhHHHHH
Confidence 5566777777778888888999999999999999999999999988888775 133333 33445679999999
Q ss_pred cchhhhhhhhcccCcccchhhHHHHHH-HhhhHHHHHHHHhhhHhh-cC------cceeeehhhHHHHHHHHHHHhheec
Q 010904 162 GWPCVVAVLGNWFGKAKRGLIMGVWNS-HTSIGNIIGSVLASGVLE-FG------WGWSFVLPGFLVIFVGVFVFLFLVV 233 (497)
Q Consensus 162 ~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~-~g------wr~~f~~~~~~~~~~~~~~~~~~~~ 233 (497)
.+.++..++.+..|++.|+++.+++.. ..++|..+|..++|++.+ +| |...+.+.+.+.++..++.+++.||
T Consensus 318 ~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 318 FHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999876 478999999999999985 34 4556666666666666666666554
Q ss_pred C
Q 010904 234 R 234 (497)
Q Consensus 234 ~ 234 (497)
+
T Consensus 398 ~ 398 (400)
T PF03825_consen 398 K 398 (400)
T ss_pred C
Confidence 3
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-09 Score=103.97 Aligned_cols=174 Identities=15% Similarity=0.201 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccC
Q 010904 36 ALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTID 115 (497)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G 115 (497)
.+.+..+...+......+....+|...++. +.+ +.+.+.+.++..+...++.+..|+++|+..
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~----------g~~-------~~~aa~l~Siigi~~i~gRi~~G~laD~~~ 361 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSL----------GLS-------SNDAAFLLSIIGVSDIIGRIILGLLADKPG 361 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCC-------hhhhHHHHHHHHHhhhhhhhhhhhhcCccc
Confidence 455566666666666667777888888888 777 999999999999999999999999999988
Q ss_pred --CchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhH
Q 010904 116 --LRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIG 193 (497)
Q Consensus 116 --rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 193 (497)
++.+..++++..+++.+.++++ ++++.+.....+.|++.|.........+.|..+.++-..+.|+.....+++
T Consensus 362 ~~~~~~~~~~ll~~gl~~~~~p~~-----~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~ 436 (509)
T KOG2504|consen 362 IRALVLFLLTLLIAGLARLFLPFA-----TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIG 436 (509)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHH
Confidence 5557888888889999999998 999999999999999999998888889999999999999999999999999
Q ss_pred HHHHHHHhhhHhh-c-CcceeeehhhHHHHHHHHHHHhhee
Q 010904 194 NIIGSVLASGVLE-F-GWGWSFVLPGFLVIFVGVFVFLFLV 232 (497)
Q Consensus 194 ~~~g~~~~~~l~~-~-gwr~~f~~~~~~~~~~~~~~~~~~~ 232 (497)
.++||++++.+.+ . +|...|+..++..++.+++. +..+
T Consensus 437 ~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~-~~~~ 476 (509)
T KOG2504|consen 437 ALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL-LILR 476 (509)
T ss_pred HHcCcccceeeeeccCCeeeehhhcChHHHHHHHHH-HHhH
Confidence 9999999998874 3 49999999999887765444 4444
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.8e-09 Score=103.06 Aligned_cols=148 Identities=21% Similarity=0.296 Sum_probs=130.5
Q ss_pred cCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcc
Q 010904 321 VHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPY 400 (497)
Q Consensus 321 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 400 (497)
+.++..+-+++.+....|.+++.+.+|++.||+|.|+++..+.++.++..++...... .+.+..++.=++.|++.+..+
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-~~~~~~~~~R~lqGl~~g~~~ 146 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-IGFYLLLVLRFLQGLGQGVLF 146 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHhHHHHhHHH
Confidence 7889999999999999999999999999999999999999999999988888776433 344466778889999999999
Q ss_pred hhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc--CchHHHHHHHHHHHHHHHHHHHHHh
Q 010904 401 SLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
+.+.....+-.|+.|| ++..++.....++|.+++-++.|++-+. ||+..|++.+++.++..++...+..
T Consensus 147 pa~~~i~~~W~P~~Er--------s~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 147 PAIGSILAKWAPPNER--------STFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred hhhhceeeeECCHHHH--------HHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998654 9999999999999999999999999887 9999999999999888777766654
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.2e-09 Score=97.00 Aligned_cols=146 Identities=14% Similarity=0.195 Sum_probs=124.8
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Q 010904 76 GWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFC 155 (497)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~ 155 (497)
||+ ..++..+.-.-.+..+++++++|++.||+|.|+++.+++++..+.++..-+. ..-..+.++-.+.
T Consensus 284 gls-------~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~-----~~~~~f~i~gll~ 351 (438)
T COG2270 284 GLS-------STELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL-----EGELDFWILGLLV 351 (438)
T ss_pred Ccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc-----cccHHHHHHHHHH
Confidence 998 9999999999999999999999999999999999999999999988887776 6666777778899
Q ss_pred hhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh--cCcceeeehhhHHHHHHHHHHHhheec
Q 010904 156 GLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE--FGWGWSFVLPGFLVIFVGVFVFLFLVV 233 (497)
Q Consensus 156 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~ 233 (497)
|...|+.+..+.++..+.+|+++-++.+|++......+..+||.+-+.+.+ ..-|..+....++..+ +.+.++.+|+
T Consensus 352 g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~i-Gl~~L~~v~~ 430 (438)
T COG2270 352 GTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLI-GLLLLLRVKV 430 (438)
T ss_pred HHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hHhhEEeecC
Confidence 999999999999999999999999999999999999999999999998885 3467666655554333 3445555554
Q ss_pred C
Q 010904 234 R 234 (497)
Q Consensus 234 ~ 234 (497)
+
T Consensus 431 ~ 431 (438)
T COG2270 431 P 431 (438)
T ss_pred C
Confidence 3
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.9e-09 Score=93.11 Aligned_cols=128 Identities=17% Similarity=0.234 Sum_probs=96.2
Q ss_pred HHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcc
Q 010904 98 TSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKA 177 (497)
Q Consensus 98 ~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 177 (497)
+.-.-|.++.+++.||+|||+.+..+.+++++..++...+.... ....+++.+|++ ..+.+.+.+.|..|.+|.+
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn-~~tvllf~araf----isg~fqvaYvYtPEVyPTa 466 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN-AYTVLLFTARAF----ISGAFQVAYVYTPEVYPTA 466 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc-hhHHHHHHHHHH----HhchheEEEEecCcccchh
Confidence 34456888999999999999999999999999999888772111 112234455554 4445567789999999999
Q ss_pred cchhhHHHHHHHhhhHHHHHHHHhhhHhhcCcceeeehhhHHHHHHHHHHHhhee
Q 010904 178 KRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGFLVIFVGVFVFLFLV 232 (497)
Q Consensus 178 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~ 232 (497)
-|+...|....+.-+|.++.|+++ ...+..-..+..+.+.+.++.+++..+ +|
T Consensus 467 vRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcf-fP 519 (528)
T KOG0253|consen 467 VRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCF-FP 519 (528)
T ss_pred hhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHhee-ee
Confidence 999999999999999999999999 444444555666777777776665544 44
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-08 Score=93.76 Aligned_cols=133 Identities=29% Similarity=0.459 Sum_probs=111.2
Q ss_pred ccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhh
Q 010904 87 HRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCV 166 (497)
Q Consensus 87 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 166 (497)
.+.++..+.+.++..++.++.|++.||+|||+.+..+.....++.++.++... ++.+.+++.|+++|++.+...+..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~ 115 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN---VGLALLLILRLLQGLGGGGLLPVA 115 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHhhhHHHHHHH
Confidence 46899999999999999999999999999998888888776666677777610 249999999999999999999999
Q ss_pred hhhhhcccCc-ccchhhHHHHHH-HhhhHHHHHHHHhhhHhhc---CcceeeehhhHHHHH
Q 010904 167 VAVLGNWFGK-AKRGLIMGVWNS-HTSIGNIIGSVLASGVLEF---GWGWSFVLPGFLVIF 222 (497)
Q Consensus 167 ~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~---gwr~~f~~~~~~~~~ 222 (497)
.+++.|++|+ ++|+...+.... ...+|..+++.+++.+... +||+.|.+.......
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 116 SALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999987 689999999888 6888999999888777743 899966665555443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.80 E-value=4e-07 Score=92.70 Aligned_cols=143 Identities=13% Similarity=0.086 Sum_probs=114.3
Q ss_pred CccchhhHHHHHHHHHHHHhhcccccc-ccCCchhhHHHHHHHHHHHHHHhhhhhhh---hhHHHHHHHHHHHhhhhhcc
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGD-TIDLRLFLVFGMMGSGLFTIIFGLAYWLS---VHLLVYFVGVQIFCGLFQSI 161 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~i~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~ 161 (497)
.+....+...+....-+..+++|+++| ++||++.+.++.++..++.++.+++.... .......+++-.+..+|.|+
T Consensus 22 ~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~Gg 101 (654)
T TIGR00926 22 ESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGG 101 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccc
Confidence 777888888888888889999999999 58999999999999999998887742111 11234466777888889999
Q ss_pred cchhhhhhhhcccCcc---cchhhHHHHHHHhhhHHHHHHHHhhhHh-hc-------CcceeeehhhHHHHHHHHHHH
Q 010904 162 GWPCVVAVLGNWFGKA---KRGLIMGVWNSHTSIGNIIGSVLASGVL-EF-------GWGWSFVLPGFLVIFVGVFVF 228 (497)
Q Consensus 162 ~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~-------gwr~~f~~~~~~~~~~~~~~~ 228 (497)
+-|+..+...|.++++ +|-..+.++..+.++|+++++.+..++. +. +|...|.+.++..++..++..
T Consensus 102 iKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 102 IKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred cccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999754 3667888889999999999998888876 32 599999998888777654443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-07 Score=83.64 Aligned_cols=359 Identities=12% Similarity=0.016 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccc--
Q 010904 35 TALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGD-- 112 (497)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d-- 112 (497)
.-+.++.+-+.+++.-....+ .+|.+.+.- |.| .++.+...-++ ..+ ..-+.|.++.|
T Consensus 31 ~~illLl~LYllQGiP~GL~~-~iP~lL~ak----------~vS-------yt~~a~fS~ay-~P~-sLKllWaPiVDs~ 90 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQAK----------GVS-------YTSQAIFSFAY-WPF-SLKLLWAPIVDSV 90 (510)
T ss_pred hhHHHHHHHHHHcCCchhHhh-hhHHHhcCC----------Ccc-------hhhhhhhhhhh-hHH-HHHHHHHhhhHHH
Confidence 334455566777776655555 678877754 666 44444432211 121 34578999999
Q ss_pred ---ccCCchhhH-HHHHHHHHHHHHHhhhh------hhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhh
Q 010904 113 ---TIDLRLFLV-FGMMGSGLFTIIFGLAY------WLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLI 182 (497)
Q Consensus 113 ---r~Grr~~l~-~~~~~~~i~~~~~~~~~------~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 182 (497)
|+||||..+ -+..+.+..+.+.+..+ ....++...+...-++.-+..+....+.-...-.+..+++.|-+
T Consensus 91 y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgya 170 (510)
T KOG3574|consen 91 YSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYA 170 (510)
T ss_pred HHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCch
Confidence 999998533 23333333333333321 11124444455555666677777777777777778888898888
Q ss_pred HHHHHHHhhhHHHHHHHHhhhHhh--------cCcc--ee-------eehhhHHHHHHHHHHHhheecCCcCCCCCCChh
Q 010904 183 MGVWNSHTSIGNIIGSVLASGVLE--------FGWG--WS-------FVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGK 245 (497)
Q Consensus 183 ~~~~~~~~~~G~~~g~~~~~~l~~--------~gwr--~~-------f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 245 (497)
......+...|..+|..+--.+.. .+|. .- .++.+.+.++...+..++-+|.++... +
T Consensus 171 ST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~-----~ 245 (510)
T KOG3574|consen 171 STCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVD-----E 245 (510)
T ss_pred hHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhh-----h
Confidence 877777777777766544333221 1343 11 233455555554544444333332210 0
Q ss_pred hhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCc
Q 010904 246 EVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSH 325 (497)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 325 (497)
+. +.......+-++++++-|.+...+......-..+.+-....+.-+.| +|.+.
T Consensus 246 e~---------------------~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-----~Gv~k 299 (510)
T KOG3574|consen 246 EL---------------------ELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-----HGVPK 299 (510)
T ss_pred hh---------------------hcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-----cCCCh
Confidence 00 00112233457788999999888888888888888888888888888 59999
Q ss_pred chhhHHHhhhhhhhhhhhhhhHHhHH-h-----hhhhhHHHHHHHHHHHHHHHHHhhccC--ch-----hHHHHHHHHHH
Q 010904 326 KTAGILSTIFDIGGVFGGILAGLISD-M-----IEARAVTSVAFLLLSIPALVLYRTYGS--IS-----MITNIPLMFLS 392 (497)
Q Consensus 326 ~~~g~~~~~~~~~~~~~~~~~g~l~d-r-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~ 392 (497)
++.+++..+..-.+++.....|+.+. + +-|+-...+.............-...+ .. ....+..-.+.
T Consensus 300 e~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~ 379 (510)
T KOG3574|consen 300 EELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFH 379 (510)
T ss_pred hHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHh
Confidence 88887765444455544444444332 1 112222222222222211111111111 01 11111122233
Q ss_pred hhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc
Q 010904 393 GLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR 452 (497)
Q Consensus 393 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 452 (497)
+.+....+...++..++..+|.. -|+.+.+.|+..++|+..-..+..++.|.
T Consensus 380 ~~~~ts~fv~~maf~aqisdp~i--------ggTymTlLNTLsnLGg~wp~tv~l~l~D~ 431 (510)
T KOG3574|consen 380 QVFVTSMFVSGMAFHAQISDPAI--------GGTYMTLLNTLSNLGGNWPGTVALWLADG 431 (510)
T ss_pred hhHHHHHHHHHHHHHhhcCCccc--------CccHHHHHHHHHHhcCCcHHHHHHHhccc
Confidence 33333334445555566666543 39999999999999998877777777764
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.2e-08 Score=96.01 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=104.0
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
+...+.+.....++..++.+++++++||+|+|+++..+.++.+++.++..+.. .+|.+.+++.-++.|++.+..++.
T Consensus 259 ~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~l~gi~~~~~~~~ 335 (428)
T PF13347_consen 259 EGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG---PGSPWLVLILFILAGIGYGAFFVI 335 (428)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH---hhhHHHHHHHHHHhHhhhcccccc
Confidence 34567888889999999999999999999999999999999999999988871 149999999999999999999999
Q ss_pred hhhhhhcccCc-------ccchhhHHHHHHHhhhHHHHHHHHhhhHhh
Q 010904 166 VVAVLGNWFGK-------AKRGLIMGVWNSHTSIGNIIGSVLASGVLE 206 (497)
Q Consensus 166 ~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 206 (497)
..++++|..+. ++.|..+|.......+|..+++.+.+.+.+
T Consensus 336 ~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 336 PWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred cccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999873 345888999999999999999988887763
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.5e-08 Score=84.02 Aligned_cols=173 Identities=14% Similarity=0.080 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccc
Q 010904 31 FHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHV 110 (497)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l 110 (497)
+.-|.+. .+++++-+..+-....+ .....+.+ |+| +...+.+.+....-.++.+++.|.+
T Consensus 264 ppfw~~~-iicv~yyva~fPFi~lg--~~fF~~rf----------GlS-------~~~a~~i~s~vy~Isav~spvfg~i 323 (459)
T KOG4686|consen 264 PPFWVLV-IICVLYYVAWFPFITLG--PMFFQKRF----------GLS-------AVSAGNILSTVYGISAVLSPVFGAI 323 (459)
T ss_pred ccHHHHH-HHHHHHHHHHHHHhhhh--HHHHHHhh----------CCC-------hhhccchhhhhhhhhhhhhhhHHHh
Confidence 3344444 44444444443332222 23456777 888 8888888888888889999999999
Q ss_pred ccccCCchhhHHHHHHHHHHH-HHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHH
Q 010904 111 GDTIDLRLFLVFGMMGSGLFT-IIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSH 189 (497)
Q Consensus 111 ~dr~Grr~~l~~~~~~~~i~~-~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 189 (497)
+||+|++...+.+..+..+.. ....+ +++.=..+..+.|+............++...|+++.|++.|..++.
T Consensus 324 ~Dk~G~n~~wv~~a~~~tl~~H~~l~F-------t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsI 396 (459)
T KOG4686|consen 324 SDKYGFNLWWVASACILTLLGHSGLFF-------TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSI 396 (459)
T ss_pred HhhhcceehhHHHHHHHHHHHhhhHHh-------hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHH
Confidence 999999988777665554433 33333 2333345566677766555444556677788889999999999999
Q ss_pred hhhHHHHHHHHhhhHhh-c---Ccceeeeh-hhHHHHHHHHHHHhhe
Q 010904 190 TSIGNIIGSVLASGVLE-F---GWGWSFVL-PGFLVIFVGVFVFLFL 231 (497)
Q Consensus 190 ~~~G~~~g~~~~~~l~~-~---gwr~~f~~-~~~~~~~~~~~~~~~~ 231 (497)
.++|..+.|++++.+.+ . .|--.|.+ .+.+++. .+.+.+.+
T Consensus 397 qNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~-svgil~~~ 442 (459)
T KOG4686|consen 397 QNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALT-SVGILFYL 442 (459)
T ss_pred HhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHH-HHHHHhhe
Confidence 99999999999999984 2 24444444 3333333 34444444
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-07 Score=92.98 Aligned_cols=171 Identities=13% Similarity=0.063 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHh----hhhhhHH-HHHHHH
Q 010904 291 FAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDM----IEARAVT-SVAFLL 365 (497)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~-~~~~~~ 365 (497)
..+..+..+........+++.|+.+. .|+++..+|.++.+.-+...+..++.|+++|| +|||+.. ..+...
T Consensus 11 yg~g~~~~~~~~~~~~~~l~~yyt~v----~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~ 86 (473)
T PRK10429 11 YGFGAFGKDFAIGIVYMYLMYYYTDV----VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLA 86 (473)
T ss_pred hccchhHHhHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHH
Confidence 34455556666777788999999998 89999999999999999999999999999994 5885554 455555
Q ss_pred HHHHHHHHHhhccCc---hhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhh
Q 010904 366 LSIPALVLYRTYGSI---SMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALG 442 (497)
Q Consensus 366 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 442 (497)
.++...+++...... ...+..+..++.+++......+..+...+..++ +++|....+......++|+.+.
T Consensus 87 ~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~-------~~eR~~l~~~~~~~~~ig~~~~ 159 (473)
T PRK10429 87 NSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLD-------KREREQLVPYPRFFASLAGFVT 159 (473)
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCC-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 555544443321111 122334444455666666666777777766643 2445777777666666665555
Q ss_pred hccccee----e--c-c-CchHHHHHHHHHHHHHHHHH
Q 010904 443 PLLAGYI----S--T-R-GWNSVFFMLIVSILFAGMFL 472 (497)
Q Consensus 443 ~~~~g~l----~--~-~-g~~~~~~~~~~~~~~~~~~~ 472 (497)
+.+...+ . + . +|.....+.+++.+++.+..
T Consensus 160 ~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~ 197 (473)
T PRK10429 160 AGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIIT 197 (473)
T ss_pred HHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 4433221 1 1 1 45555555555555444333
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.2e-08 Score=96.08 Aligned_cols=121 Identities=13% Similarity=0.065 Sum_probs=97.0
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
+...++......++..++.++++++.||+|+|+++.++.++..++.++..+. ..++++.+++..++.|+|.+...+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~g~G~~~~~~~ 339 (448)
T PRK09848 263 GLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV---SVWSLPVALVALAIASIGQGVTMTV 339 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc---CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444467778899999999999999999999999888888777664 1146777778888999999999999
Q ss_pred hhhhhhcccCcc-------cchhhHHHHHHHhhhHHHHHHHHhhhHhh-cCc
Q 010904 166 VVAVLGNWFGKA-------KRGLIMGVWNSHTSIGNIIGSVLASGVLE-FGW 209 (497)
Q Consensus 166 ~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~gw 209 (497)
..++.+|..|.+ ++|...++.+....+|..+|+.+.+.+.+ .|+
T Consensus 340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999988754 35899999999999999999988887763 444
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=93.82 Aligned_cols=169 Identities=12% Similarity=0.072 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHh----hhhhhHH-HHHHHHHH
Q 010904 293 FCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDM----IEARAVT-SVAFLLLS 367 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~-~~~~~~~~ 367 (497)
+..+..+........+++.|+.+. +|+++..+|.+..+.-+...+..++.|+++|| +||||.. ..+....+
T Consensus 16 ~g~~~~~~~~~~~~~~l~~~~t~~----~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~ 91 (444)
T PRK09669 16 LGDTACNLVWQTVMLFLAYFYTDV----FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFG 91 (444)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHH
Confidence 344444555566678899999998 89999999999999999999999999999999 5665554 45555555
Q ss_pred HHHHHHHhhcc---CchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhc
Q 010904 368 IPALVLYRTYG---SISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPL 444 (497)
Q Consensus 368 ~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 444 (497)
+...+++.... ....++..+..++.+.+......+..+...+...++ ++|++..+.......+|+.+++.
T Consensus 92 i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~-------~eR~~l~~~r~~~~~~G~~i~~~ 164 (444)
T PRK09669 92 VVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDP-------RERHSLQSWRFALSFIGGLIVSV 164 (444)
T ss_pred HHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544443221 112334444444555555555666666666655432 44567777777777777666654
Q ss_pred cc----ceeec---c-CchHHHHHHHHHHHHHHHHH
Q 010904 445 LA----GYIST---R-GWNSVFFMLIVSILFAGMFL 472 (497)
Q Consensus 445 ~~----g~l~~---~-g~~~~~~~~~~~~~~~~~~~ 472 (497)
+. ..+.+ . +|...+.+.+++.+++.+..
T Consensus 165 ~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~ 200 (444)
T PRK09669 165 IALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCC 200 (444)
T ss_pred HHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 32 22221 1 56666666666655554433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-06 Score=80.18 Aligned_cols=153 Identities=18% Similarity=0.142 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHH
Q 010904 305 FLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMIT 384 (497)
Q Consensus 305 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (497)
....++..-++ +|.|...+|++.++..++..+.+++..++.+|+|.++.+..+.++.+++..+=.. .+.+.
T Consensus 31 vgPLL~~Ir~~-----~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~----~~~~~ 101 (395)
T COG2807 31 VGPLLDEIRQD-----LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL----GGLPL 101 (395)
T ss_pred hhhhHHHHHHH-----hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc----ccHHH
Confidence 33444444444 7999999999999999999999999999999999999999888888877665433 25667
Q ss_pred HHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc--CchHHHHHHH
Q 010904 385 NIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFMLI 462 (497)
Q Consensus 385 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~ 462 (497)
++....+.|.+.+..+...+..+-+++| |+.+..+|++....++++++++.+.-.+.++ +|+..+.+-+
T Consensus 102 L~~gt~l~G~gIav~nVLLPslIK~~Fp---------k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WA 172 (395)
T COG2807 102 LFLGTLLAGAGIAVINVLLPSLIKRDFP---------KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWA 172 (395)
T ss_pred HHHHHHHHHhhHHHHHHhhhHHHHhhcc---------cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHH
Confidence 7788888999999999999999999987 4459999999999999999999998888777 6999998888
Q ss_pred HHHHHHHHHHHHH
Q 010904 463 VSILFAGMFLIRI 475 (497)
Q Consensus 463 ~~~~~~~~~~~~~ 475 (497)
...+++.+..+.-
T Consensus 173 l~allAl~~WlPq 185 (395)
T COG2807 173 LLALLALLIWLPQ 185 (395)
T ss_pred HHHHHHHHHHhhh
Confidence 8888877665544
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.60 E-value=5e-07 Score=80.06 Aligned_cols=151 Identities=23% Similarity=0.215 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccC-
Q 010904 301 VAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGS- 379 (497)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~- 379 (497)
..|.+..|.|..-++ +|+|..+...+.....+|..+| ++.|.+.|++|.+..+.++.....++...+......
T Consensus 17 t~Y~Fs~yS~~Lk~~-----l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~ 90 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSR-----LGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR 90 (250)
T ss_pred cccchhhhhHHHHHH-----hCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 445566666655544 7999999999999999998875 889999999999999999999999998877664332
Q ss_pred ---chhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeeccCchH
Q 010904 380 ---ISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNS 456 (497)
Q Consensus 380 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~g~~~ 456 (497)
.+.|...+..++.|.+.............+.+|. +||++.|+.-....+++++-..+...+.+.+...
T Consensus 91 i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~---------~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~ 161 (250)
T PF06813_consen 91 IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR---------SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSS 161 (250)
T ss_pred cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc---------ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHH
Confidence 3445555555555555444444555555677764 3499999999999998888887776666664444
Q ss_pred HHHHHHHHHH
Q 010904 457 VFFMLIVSIL 466 (497)
Q Consensus 457 ~~~~~~~~~~ 466 (497)
.+.+.+....
T Consensus 162 fll~la~~~~ 171 (250)
T PF06813_consen 162 FLLFLAVLPA 171 (250)
T ss_pred HHHHHHHHHH
Confidence 4444444333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-07 Score=92.15 Aligned_cols=148 Identities=11% Similarity=0.054 Sum_probs=115.1
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhh-----hhhhHHHHHHHHHHHhhhhhc
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYW-----LSVHLLVYFVGVQIFCGLFQS 160 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~~~l~~~r~l~G~~~~ 160 (497)
+.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+....... ...++.+.++..-++.+++.+
T Consensus 287 ~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g 366 (468)
T TIGR00788 287 PSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQ 366 (468)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHH
Confidence 999999999999999999999999999999999999999999988866432100 001344556677888899989
Q ss_pred ccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh-cC-----cceeeehhhHHH--HHHHHHHHhhee
Q 010904 161 IGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE-FG-----WGWSFVLPGFLV--IFVGVFVFLFLV 232 (497)
Q Consensus 161 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~g-----wr~~f~~~~~~~--~~~~~~~~~~~~ 232 (497)
....+...++.+..|+++++...++..+..++|..+++.+++.+.+ .| .+..+....+.+ -+..+...+++|
T Consensus 367 ~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP 446 (468)
T TIGR00788 367 LKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLP 446 (468)
T ss_pred HHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888889999999999999999999999999999999999999884 34 444433333322 232333444677
Q ss_pred c
Q 010904 233 V 233 (497)
Q Consensus 233 ~ 233 (497)
+
T Consensus 447 ~ 447 (468)
T TIGR00788 447 R 447 (468)
T ss_pred C
Confidence 5
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.9e-05 Score=74.11 Aligned_cols=288 Identities=11% Similarity=0.013 Sum_probs=141.9
Q ss_pred HHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccc-----c
Q 010904 39 ITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGD-----T 113 (497)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d-----r 113 (497)
++.+.+++++.-........|.+.++. ..+.+ .+|.|... .....+. .-++|.++.| |
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~--------~~~~s-------y~q~~~fS-la~~PfS-lKlLWaPiVDs~y~~~ 66 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSM--------AKKVS-------YSQQAIFS-LASYPFS-LKLLWAPIVDSVYSKR 66 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccc--------cCCCC-------hhHheeee-eeechhH-HHHhhhhhhhhhcccc
Confidence 445556666654443323456666651 00455 55555431 1111221 2345555555 8
Q ss_pred cCCchhhHHH-HHHHHHHHHHHhhhhh------------h-----hhhH--HHHHHHHHHHhhhhhcccchhhhhhhhcc
Q 010904 114 IDLRLFLVFG-MMGSGLFTIIFGLAYW------------L-----SVHL--LVYFVGVQIFCGLFQSIGWPCVVAVLGNW 173 (497)
Q Consensus 114 ~Grr~~l~~~-~~~~~i~~~~~~~~~~------------~-----~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 173 (497)
+||||..++= -.+.++..+..+.... . ..++ ...+...-++.=+-.+....+.-...-.+
T Consensus 67 ~GRRKSWiiP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~ 146 (544)
T PF13000_consen 67 IGRRKSWIIPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTM 146 (544)
T ss_pred cCCcchhhhHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhh
Confidence 9999964432 3333443444333210 0 0011 11222333233334455555555555566
Q ss_pred cCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh--c---Ccce------------eeehhhHHHHHHHHHHHhheecCCc
Q 010904 174 FGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE--F---GWGW------------SFVLPGFLVIFVGVFVFLFLVVRPE 236 (497)
Q Consensus 174 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--~---gwr~------------~f~~~~~~~~~~~~~~~~~~~~~p~ 236 (497)
..+++++.+......+.+.|..++..+--.+.. + -+|. -..+.|...++..+.+.++-+|.|.
T Consensus 147 Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~ 226 (544)
T PF13000_consen 147 LSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPH 226 (544)
T ss_pred cChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccc
Confidence 677888888887777777777776544433331 0 1221 1234455566666666666677664
Q ss_pred CCCCCCChhhhhhhhhccCCccccccccccccC--CCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010904 237 DLGFELPGKEVELMNVENGDKVENEEVGLLESG--SSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIR 314 (497)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (497)
.......+.......+..+.+.+.++.+....+ ......-....+++|.|.+..+.+.....-.++...-.-...-+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLl 306 (544)
T PF13000_consen 227 SESLPKIEPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLL 306 (544)
T ss_pred cccCccccccccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 332111110000000000000000000000000 011222345667888999999888888888887777777777777
Q ss_pred HhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHH
Q 010904 315 HTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGL 348 (497)
Q Consensus 315 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 348 (497)
+ .|++.+..+++..+..-..++..+..++
T Consensus 307 E-----kG~~KE~LAl~~li~~P~qii~~~~~~K 335 (544)
T PF13000_consen 307 E-----KGLSKEDLALLVLIDFPFQIILPYYIGK 335 (544)
T ss_pred H-----cCCCHHHhHHHHHHhhhHHHHHHHHhhh
Confidence 8 5999988877655444444444444443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-07 Score=75.55 Aligned_cols=108 Identities=12% Similarity=0.192 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhh
Q 010904 92 LDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLG 171 (497)
Q Consensus 92 ~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 171 (497)
-.++......++.++.+.+.+++|.|+.++++.+.+.+-.+..-. ++.+.++.+-++.|++.+..|.+.-.++.
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt 115 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY------PNSYTLYPASALLGFGAALLWTAQGTYLT 115 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHhhhhHHhhHhhhHHHH
Confidence 355666667788888999999999999999999999876655433 88899999999999999999999999999
Q ss_pred cccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh
Q 010904 172 NWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL 205 (497)
Q Consensus 172 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 205 (497)
+..++++|++..+++......+.++|.++...+.
T Consensus 116 ~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 116 SYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888887766553
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.3e-07 Score=89.86 Aligned_cols=145 Identities=23% Similarity=0.344 Sum_probs=119.3
Q ss_pred cCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcc
Q 010904 321 VHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPY 400 (497)
Q Consensus 321 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 400 (497)
.++...+.+.+.+++.++.+++.+.++.+.||++..+.+....+..++..++... ..+.+.+++.-++.|++.++.+
T Consensus 76 l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~---~~s~~~~ialr~llGl~es~~w 152 (495)
T KOG2533|consen 76 LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA---VHSFPGLIALRFLLGLFESGGW 152 (495)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHhcccc
Confidence 5777888999999999999999999999999999666665555555544433333 3578888899999999999999
Q ss_pred hhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeec-------cCchHHHHHHHHHHHHHHHHHH
Q 010904 401 SLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYIST-------RGWNSVFFMLIVSILFAGMFLI 473 (497)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-------~g~~~~~~~~~~~~~~~~~~~~ 473 (497)
|....++...+..++ +|..+|+.++..++|+++|+.+...+.+ .||++.|++-+++.+...++.+
T Consensus 153 P~~~~~lg~wy~~~e--------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f 224 (495)
T KOG2533|consen 153 PGVVAILGNWYGKSE--------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF 224 (495)
T ss_pred hHHHHHHHhhcChhh--------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence 999999999998754 4999999999999999999999877533 2999999999998888877665
Q ss_pred HHH
Q 010904 474 RIV 476 (497)
Q Consensus 474 ~~~ 476 (497)
+..
T Consensus 225 ~~l 227 (495)
T KOG2533|consen 225 FFL 227 (495)
T ss_pred EEe
Confidence 543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.4e-07 Score=92.68 Aligned_cols=138 Identities=22% Similarity=0.308 Sum_probs=119.8
Q ss_pred cCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcc
Q 010904 321 VHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPY 400 (497)
Q Consensus 321 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 400 (497)
.+.+.....+..+++.+|..+|.++.|.++||+|||+++.++..+..++.+...+ ..+.+...+.-++.|++.++..
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~---a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF---APNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH---hCcHHHHHHHHHHHHhhccchh
Confidence 5667778888899999999999999999999999999999999999988877666 4788899999999999999999
Q ss_pred hhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeeccCchHHHHHHHHHHHHHHHH
Q 010904 401 SLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMF 471 (497)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~ 471 (497)
.....+..|.++++ .|+.+..+ ......++.+++...+++.. +|+..++...+...+..++
T Consensus 190 ~~~~~~~~E~~~~~--------~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPK--------QRGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLLL 250 (521)
T ss_pred HHhHhhheeecCcc--------hhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH
Confidence 99999999999974 45888888 77778888888888888776 8999999888887776665
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=87.18 Aligned_cols=166 Identities=13% Similarity=0.065 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHh----hhhhhHHH-HHHHHHH
Q 010904 293 FCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDM----IEARAVTS-VAFLLLS 367 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~~-~~~~~~~ 367 (497)
+.-+..+........|+..|+.+. .|+++..+|.++.+.-+...+.-++.|+++|| +||||..+ ++...++
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~----~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~ 91 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDI----FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFG 91 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHh----hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHH
Confidence 444445566666778899999998 89999999999999999999999999999997 47766554 4556666
Q ss_pred HHHHHHHhhccCch----hHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhh
Q 010904 368 IPALVLYRTYGSIS----MITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGP 443 (497)
Q Consensus 368 ~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 443 (497)
+...+++.. +..+ ..+..+..+++..+......+..+...+..++ +++|++..+.......+|..+++
T Consensus 92 i~~~llf~~-p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d-------~~eRt~l~s~r~~~~~iG~~~~~ 163 (460)
T PRK11462 92 IVCVLAYST-PDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITND-------PTQRISLQSWRFVLATAGGMLST 163 (460)
T ss_pred HHHHHHHhC-CCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555433 2211 23444455556667767667777777776654 36668889988888888877776
Q ss_pred cccceeecc--------CchHHHHHHHHHHHHHHH
Q 010904 444 LLAGYISTR--------GWNSVFFMLIVSILFAGM 470 (497)
Q Consensus 444 ~~~g~l~~~--------g~~~~~~~~~~~~~~~~~ 470 (497)
.+...+.+. +|.....+.+++.+++..
T Consensus 164 ~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~ 198 (460)
T PRK11462 164 VLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLA 198 (460)
T ss_pred HHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 554332221 455555555555444443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-07 Score=89.66 Aligned_cols=137 Identities=12% Similarity=0.190 Sum_probs=123.2
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
+...|.....-..+-.+.-++.+++..|+|+-+++.+++.+.++=.+..+.. +|.|+.+...+++|+..+.+|.+
T Consensus 405 ~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-----~n~W~vLPieilqgit~aliWaa 479 (618)
T KOG3762|consen 405 KTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-----QNPWMVLPIEILQGITHALIWAA 479 (618)
T ss_pred ceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-----cCchheeeHHHHHHHHHHHHHHH
Confidence 6677877777788888888899999999999999999999999999999988 99999999999999999999999
Q ss_pred hhhhhhcccCcccchhhHHHHH-HHhhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHH
Q 010904 166 VVAVLGNWFGKAKRGLIMGVWN-SHTSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFV 227 (497)
Q Consensus 166 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~ 227 (497)
..+++++..||+-|..+.++.+ ...++|--+|.++||.+. .+|-|..|.+.++.+++..++.
T Consensus 480 ~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 480 IISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALF 543 (618)
T ss_pred HHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986 456899999999999998 5788999999888887764433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.1e-06 Score=82.43 Aligned_cols=173 Identities=17% Similarity=0.114 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhh----hhhhH-HHHHHH
Q 010904 290 PFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMI----EARAV-TSVAFL 364 (497)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~----~~~~~-~~~~~~ 364 (497)
......+..+........|+..|+.++ .|+++..+|.++.+.=+...+.-++.|.++||. ||+|. ++.+.+
T Consensus 16 ~Yg~gd~~~~~~~~~~~~yLl~fYTdv----~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~i 91 (467)
T COG2211 16 GYGLGDFASNFAFGIVVLYLLFFYTDV----FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAI 91 (467)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHhcc----cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhH
Confidence 344555666677777888999999999 899999999999999999999999999999975 55555 455556
Q ss_pred HHHHHHHHHHhhcc---CchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhh
Q 010904 365 LLSIPALVLYRTYG---SISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAAL 441 (497)
Q Consensus 365 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 441 (497)
..++...+++...+ ..+.....+...+.+++......+..+..++...+ +++|.+..+.-..+..+|..+
T Consensus 92 p~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d-------~~ER~~l~s~R~~~~~~g~~l 164 (467)
T COG2211 92 PFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD-------PQERASLTSWRMVFASLGGLL 164 (467)
T ss_pred HHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCC-------HHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655332 23455666777788888888888888887777665 355688888888888887766
Q ss_pred hhcccceeecc--------CchHHHHHHHHHHHHHHHHHH
Q 010904 442 GPLLAGYISTR--------GWNSVFFMLIVSILFAGMFLI 473 (497)
Q Consensus 442 ~~~~~g~l~~~--------g~~~~~~~~~~~~~~~~~~~~ 473 (497)
...+.+.+.+. ||+....+.+++..+..++++
T Consensus 165 ~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~ 204 (467)
T COG2211 165 VAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCF 204 (467)
T ss_pred HHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 66555444433 455555555555544444433
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.6e-06 Score=85.90 Aligned_cols=133 Identities=22% Similarity=0.348 Sum_probs=111.8
Q ss_pred hhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHH
Q 010904 327 TAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTA 406 (497)
Q Consensus 327 ~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 406 (497)
+.+++.+...++..++.++.|+++|++|||+.+..+.+...++.++.... .+...+.++-++.|++.++.......+
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a---~~~~~l~~GR~l~G~g~G~~~~~~piy 166 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA---PSWYQLIVGRILTGLGVGGASVLAPVY 166 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHhccchhhhhhcchhh
Confidence 34799999999999999999999999999999999999999988888764 578888899999999999999888888
Q ss_pred HHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc---CchHHHHHHHHHHHHHHHH
Q 010904 407 VAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR---GWNSVFFMLIVSILFAGMF 471 (497)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---g~~~~~~~~~~~~~~~~~~ 471 (497)
..|..|+ +.||...+..+....+|..++ .+.+...++ +|+..+.+..+..++..+.
T Consensus 167 ~sEiap~--------~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 167 ISEIAPA--------HIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG 225 (513)
T ss_pred HhhcCCh--------hhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH
Confidence 8888876 445999999998888887777 555565543 7998888877777776666
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.6e-09 Score=102.84 Aligned_cols=140 Identities=18% Similarity=0.182 Sum_probs=97.3
Q ss_pred HHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHh--hhhhhhhh---HHHHHHHHHHHhhhhhcccchhhhhhhhc
Q 010904 98 TSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFG--LAYWLSVH---LLVYFVGVQIFCGLFQSIGWPCVVAVLGN 172 (497)
Q Consensus 98 ~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~--~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 172 (497)
+...++.+....+.||+|||+.++.+..+.+++.+..+ .......+ +...+............+..+....+.+|
T Consensus 297 ~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~E 376 (451)
T PF00083_consen 297 LVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAE 376 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccc
Confidence 44556667777999999999999999999988888775 11000111 22222222222111222344666788899
Q ss_pred ccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhhcCc-ceeeehhhHHHHHHHHHHHhheecCCcC
Q 010904 173 WFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGW-GWSFVLPGFLVIFVGVFVFLFLVVRPED 237 (497)
Q Consensus 173 ~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~gw-r~~f~~~~~~~~~~~~~~~~~~~~~p~~ 237 (497)
.+|.+.|+++.++......++..+++.+...+.+... ...|.+.+.++++..+..++++||+...
T Consensus 377 lfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~ 442 (451)
T PF00083_consen 377 LFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGK 442 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCC
Confidence 9999999999999999999999998888777764333 5667777777777778888999987654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.4e-06 Score=85.26 Aligned_cols=165 Identities=10% Similarity=0.068 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhh-hhhhHHHHHHHHHHHHHHHHHhhccC-
Q 010904 302 AYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMI-EARAVTSVAFLLLSIPALVLYRTYGS- 379 (497)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~- 379 (497)
++++...+..|+.+. +|++...+..+...+....-+..+++|+++|++ |+++.+.++.++..++..++......
T Consensus 3 yYGm~aiLvlYl~~~----lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~ 78 (654)
T TIGR00926 3 YYGMRTILVLYFLNF----LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPS 78 (654)
T ss_pred eeecHHHHHHHHHHH----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 456677788888887 799988888877777776777788999999975 99999998888888877666542111
Q ss_pred ----chhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc---
Q 010904 380 ----ISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR--- 452 (497)
Q Consensus 380 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--- 452 (497)
......++.+.+...+.++.-+...+...+.+++++ .+.+-....+.....++|+.+++.+.+++.+.
T Consensus 79 ~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~-----~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~ 153 (654)
T TIGR00926 79 SGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ-----LSLRSRFFSFFYFAINAGSLISTIITPILRGDVGC 153 (654)
T ss_pred cccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 112335567777888889999999999988876543 24567889999999999999999998888632
Q ss_pred -----CchHHHHHHHHHHHHHHHHHHHH
Q 010904 453 -----GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 453 -----g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
+|..+|.+.+++.+++.++....
T Consensus 154 fg~~~~~~~aF~i~~i~m~ia~lvf~~g 181 (654)
T TIGR00926 154 FGCQDCYPLAFGVPAILMILALIVFMAG 181 (654)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 58888888888888877766543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.3e-06 Score=78.15 Aligned_cols=138 Identities=18% Similarity=0.240 Sum_probs=116.4
Q ss_pred CccchhhHHHHHHHHHHHHhhcccccc-ccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccch
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGD-TIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWP 164 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 164 (497)
..|...+...+..|..++....|++.. |.++|+.-.+++....++..+..++ ...++.+.+...-++.|++.|.+..
T Consensus 243 v~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a--~~~~~~~~~~~~~~l~G~g~G~f~v 320 (403)
T PF03209_consen 243 VGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA--GPLGSPWLFRPGVFLLGLGNGLFTV 320 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH--HhcccchHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999998877 7888888888888888877776655 2236789999999999999999999
Q ss_pred hhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhhc-----------CcceeeehhhHHHHHHHH
Q 010904 165 CVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEF-----------GWGWSFVLPGFLVIFVGV 225 (497)
Q Consensus 165 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-----------gwr~~f~~~~~~~~~~~~ 225 (497)
...+.+.|..++++.|..+|.+.....++..+|..+++.+.+. ++-.+|.+.++..++..+
T Consensus 321 gals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 321 GALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988751 355667777666555433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-06 Score=81.06 Aligned_cols=115 Identities=17% Similarity=0.300 Sum_probs=87.2
Q ss_pred CCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCc----hhHHHHHHHHHHhhhccC
Q 010904 323 LSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSI----SMITNIPLMFLSGLLVNG 398 (497)
Q Consensus 323 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~ 398 (497)
+++...+.+.....++.++|+++.|++.||+|||++.....+++.++.++..+....+ -.+++...=+++|++.++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGG 160 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGG 160 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccC
Confidence 6677788899999999999999999999999999998888877777776444322222 234555666789999999
Q ss_pred cchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcc
Q 010904 399 PYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLL 445 (497)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 445 (497)
-+|...+..+|.... +.||+-.+.+..++..|...|..+
T Consensus 161 DYPlSAtI~SE~an~--------~~RGa~iaavFa~Qg~GilaG~iv 199 (538)
T KOG0252|consen 161 DYPLSATIMSESANK--------KTRGAFIAAVFAMQGFGILAGGIV 199 (538)
T ss_pred CCcchHHHhhhhhhh--------ccccceeEEEEEecchhHhhccHH
Confidence 999998888887654 445888877777776665555443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.8e-07 Score=65.04 Aligned_cols=80 Identities=20% Similarity=0.182 Sum_probs=71.8
Q ss_pred HhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHH
Q 010904 48 HASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGS 127 (497)
Q Consensus 48 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 127 (497)
+..|..+.+++|.+.+|. ++| .++.|++.+..++||.+|.+...++.++..+++.+..+++..
T Consensus 5 GigRFayTplLP~M~~~~----------~ls-------~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~ 67 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADG----------GLS-------LSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLT 67 (85)
T ss_pred hhHHHHHHhHhHHHHHhc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 345666788999999998 888 999999999999999999999999999988899999999999
Q ss_pred HHHHHHHhhhhhhhhhHHHHHH
Q 010904 128 GLFTIIFGLAYWLSVHLLVYFV 149 (497)
Q Consensus 128 ~i~~~~~~~~~~~~~~~~~~l~ 149 (497)
.+..+.+++. ++.+.+.
T Consensus 68 ~~~~~~ma~~-----~~~~~w~ 84 (85)
T PF06779_consen 68 VLSTAAMALT-----HSFWLWS 84 (85)
T ss_pred HHHHHHHHHH-----hchHHHh
Confidence 9999999998 7776553
|
Note that many members are hypothetical proteins. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.4e-05 Score=68.88 Aligned_cols=149 Identities=15% Similarity=0.092 Sum_probs=105.0
Q ss_pred cCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcc
Q 010904 321 VHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPY 400 (497)
Q Consensus 321 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 400 (497)
+|++..+.+.++........+...+.|.++||+|||+..+..+++..+.++.-. .++...+++.=++.|+.....+
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~----~~~~~~L~~GRvlgGiaTSLLf 139 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH----SSNYPVLLLGRVLGGIATSLLF 139 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999998888888886543 3567788888888899888887
Q ss_pred hhHHHHHHhhcccccccccccchhHHHHHHHhh-hhhhhhhhhhcccceeecc---CchHHHHHHHHHHHHHHHHHHHHH
Q 010904 401 SLITTAVAADLGTQDLIKGNSRALATVTAIIDG-TGSVGAALGPLLAGYISTR---GWNSVFFMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~~~~~~~g~l~~~---g~~~~~~~~~~~~~~~~~~~~~~~ 476 (497)
+..-++...+-.. +.++ ++..+...+.... .+.+-.+.+..+..++.+. |...+|.....+.+++.++....+
T Consensus 140 S~FEsW~V~Eh~~-~g~~--~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W 216 (354)
T PF05631_consen 140 SAFESWMVHEHNK-RGFP--QEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTW 216 (354)
T ss_pred HHHHHHHHHHHHH-cCCC--hHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcc
Confidence 7777666555422 1222 2334555554442 2333344444444444444 457788888887777776655443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-05 Score=57.11 Aligned_cols=72 Identities=26% Similarity=0.399 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHH
Q 010904 290 PFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLL 366 (497)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 366 (497)
.+-...++..........++|.|+++ .|+|+.+.|.+.++..+..+++.++.|+++||.++++........+
T Consensus 4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-----~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 4 PLKAFYFFYFAALGCLYPFLPLYLKQ-----LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 34456777778888899999999998 4999999999999999999999999999999999998877665543
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0016 Score=64.17 Aligned_cols=260 Identities=11% Similarity=0.037 Sum_probs=151.2
Q ss_pred CccchhhHHHHHH-HHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhh------------------------
Q 010904 86 THRLGELDLAFLT-SYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWL------------------------ 140 (497)
Q Consensus 86 ~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~------------------------ 140 (497)
++.+..+=....+ ...+......+++++++|.+++-+....+.....++++-.+.
T Consensus 57 ae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~ 136 (491)
T PF03219_consen 57 AEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKG 136 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHH
Confidence 5566666554444 344567789999999999999888887777777766663211
Q ss_pred --hhhHHHHHHHHHHHhhhhhcccch-hhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh----------c
Q 010904 141 --SVHLLVYFVGVQIFCGLFQSIGWP-CVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE----------F 207 (497)
Q Consensus 141 --~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----------~ 207 (497)
..-+.|.+.+.-+..-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.+++..+...+.+ .
T Consensus 137 ~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~ 216 (491)
T PF03219_consen 137 FIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVD 216 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence 001223333333333322222222 346788999999999999999999999999999888777765 2
Q ss_pred Ccceeeehh----hHHHHHHHHHHHhheecCC-cCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHH
Q 010904 208 GWGWSFVLP----GFLVIFVGVFVFLFLVVRP-EDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEA 282 (497)
Q Consensus 208 gwr~~f~~~----~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (497)
.|...+... .+.+++. +.....+.+.. +.+.......+ .+.++++..-..+++.+
T Consensus 217 ~~~~~l~~l~~~v~~~g~~i-~~~~~~~~~~vl~~~~~~~~~~~-------------------~kk~k~k~s~~es~k~l 276 (491)
T PF03219_consen 217 AWELSLNSLMGIVLILGIVI-ILLYRYMNKNVLTDPRFYPSAKK-------------------KKKKKPKMSLKESFKLL 276 (491)
T ss_pred cHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCccccchhhhc-------------------ccccCCCccHHHHHHHH
Confidence 354332221 2222221 22222332211 11100000000 00111223345667788
Q ss_pred hhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcc---hhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHH
Q 010904 283 WKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHK---TAGILSTIFDIGGVFGGILAGLISDMIEARAVT 359 (497)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~ 359 (497)
+++|.+..+++...+++.....+....-..+++. +--+.+ -.|-.....++..++..++++.+.+|+|-+...
T Consensus 277 ~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~----~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~A 352 (491)
T PF03219_consen 277 LKSKYLLCIALLVIAYGISINLVEVVWKSQLKQL----YPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAA 352 (491)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8999888888888877777766666555556655 322221 124445556666666778888999999888776
Q ss_pred HHHHHHHHHH
Q 010904 360 SVAFLLLSIP 369 (497)
Q Consensus 360 ~~~~~~~~~~ 369 (497)
.+.-..+.+.
T Consensus 353 litPiv~lit 362 (491)
T PF03219_consen 353 LITPIVILIT 362 (491)
T ss_pred HHhHHHHHHH
Confidence 6654444433
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0071 Score=58.13 Aligned_cols=264 Identities=8% Similarity=-0.051 Sum_probs=155.8
Q ss_pred CccchhhHHHHHH-HHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhh-----------------hh----
Q 010904 86 THRLGELDLAFLT-SYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLS-----------------VH---- 143 (497)
Q Consensus 86 ~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~-----------------~~---- 143 (497)
+..+.++=+...+ +..+..++.+++.+++.|.+++-+-+..+....+++++..+.. .+
T Consensus 60 ae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~ 139 (509)
T COG3202 60 AESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLK 139 (509)
T ss_pred chhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccce
Confidence 6778888887777 6678889999999999999999999999888888888754310 01
Q ss_pred ------HHHHHHHHHHHhhhhhcccch-hhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhhc--C------
Q 010904 144 ------LLVYFVGVQIFCGLFQSIGWP-CVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEF--G------ 208 (497)
Q Consensus 144 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--g------ 208 (497)
+.|...+.-.+.=+-...... .-.....|.+..+|-.|..++++...+++..++..+..++.+. .
T Consensus 140 ~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~ 219 (509)
T COG3202 140 WFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFK 219 (509)
T ss_pred eeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHH
Confidence 112222222222222122222 3356678888889999999999999999999988888887741 1
Q ss_pred ---cceeeehhhHHHHHHHHHHHhhee-cCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhh
Q 010904 209 ---WGWSFVLPGFLVIFVGVFVFLFLV-VRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWK 284 (497)
Q Consensus 209 ---wr~~f~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (497)
-+..+.+.++.++++ +....++. ...+..... .+... + .+.++.+..-..+++.+.|
T Consensus 220 ~~~~~~~~~vi~~~~~i~-~~l~~~~~r~il~~~~f~-~~~~~-------k----------k~~~k~k~~~~~s~k~i~~ 280 (509)
T COG3202 220 DLLLQILFIVIVILGIIA-ILLYRYINRNVLTDPLFY-LRAKK-------K----------KKKKKLKLGLIESFKMILR 280 (509)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhhcccCcchh-HHHhc-------c----------cccccccCcHHHHHHHHHh
Confidence 334455555554444 33333332 222111110 00000 0 0001122334456777888
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcch---hhHHHhhhhhh-hhhhhhhhHHhHHhhhhhhHHH
Q 010904 285 LPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKT---AGILSTIFDIG-GVFGGILAGLISDMIEARAVTS 360 (497)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~---~g~~~~~~~~~-~~~~~~~~g~l~dr~~~~~~~~ 360 (497)
+|..+.+++...+++.+...+....-.-.++. +-...+. .|.+....++. .++...+++.+.+|.|-....+
T Consensus 281 SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~----~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~Al 356 (509)
T COG3202 281 SKYLGAIALLVLAYGVSINLVEGVWKSGIKEL----YPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGAL 356 (509)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh----cCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHH
Confidence 89888888888887777665554333333332 2222222 23344444555 4455567888888888776665
Q ss_pred HHHHHHHHHHHH
Q 010904 361 VAFLLLSIPALV 372 (497)
Q Consensus 361 ~~~~~~~~~~~~ 372 (497)
+.-+...+..++
T Consensus 357 itPiv~litg~l 368 (509)
T COG3202 357 ITPLVMLITGVL 368 (509)
T ss_pred HHHHHHHHHHHH
Confidence 555554444333
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.1e-05 Score=75.92 Aligned_cols=182 Identities=14% Similarity=0.152 Sum_probs=116.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhh-hhHHHHHHHHH
Q 010904 288 VAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEA-RAVTSVAFLLL 366 (497)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~-~~~~~~~~~~~ 366 (497)
++...+..++.......+..-.=.|+++. +.+-+....|++.+...++..++++..|+.+.|.+. |+.++.+++++
T Consensus 36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~l---D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~ 112 (488)
T KOG2325|consen 36 IYLALLNSFLVAVQFSIYLTSMWPYLQKL---DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIA 112 (488)
T ss_pred HHHHHHHHHHHhhhheEEEeecchhhhhc---CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHH
Confidence 34444555555444444444445566663 247778889999999999999999999999999876 77888888888
Q ss_pred HHHHHHH-Hhhc-cCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhc
Q 010904 367 SIPALVL-YRTY-GSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPL 444 (497)
Q Consensus 367 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 444 (497)
.++.++. .... +....+++.++=++.|++.+.. ...-.+++..-.+ ++|.++++..+....+|.++||.
T Consensus 113 ~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~--------~dR~rA~a~~~~~~vlg~ilGp~ 183 (488)
T KOG2325|consen 113 IIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTV--------EDRPRAFAATSGGFVLGIILGPT 183 (488)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCc--------cchHHHHHHhhhHHHHHHHHhHH
Confidence 8887765 2222 2225667777778888776543 3444555543333 23355555555555556666554
Q ss_pred c----cceeecc----------CchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010904 445 L----AGYISTR----------GWNSVFFMLIVSILFAGMFLIRIVKAEIR 481 (497)
Q Consensus 445 ~----~g~l~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (497)
+ .+...+. -|..+-++++++.++..+......++..+
T Consensus 184 ~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 184 IQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 3 3333222 36677788888888887777766554433
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.9e-05 Score=74.03 Aligned_cols=282 Identities=16% Similarity=0.088 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh---hc--C--cc-eeee
Q 010904 143 HLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL---EF--G--WG-WSFV 214 (497)
Q Consensus 143 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~---~~--g--wr-~~f~ 214 (497)
..++..++.-++.|++.+........+.+ .+|++ .+..+..+.+++++++.++--... .. | ++ ..|.
T Consensus 104 ~~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF 178 (437)
T TIGR00939 104 GFFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYF 178 (437)
T ss_pred hHHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHH
Confidence 35777788888899998888888777666 55543 345555556666655544322221 11 1 11 2233
Q ss_pred hhhHHHHHHHHHHHhheecCCcCCC---CC----CChhhh-hhhhhccCCccc---ccccc---------ccc-cCCCCc
Q 010904 215 LPGFLVIFVGVFVFLFLVVRPEDLG---FE----LPGKEV-ELMNVENGDKVE---NEEVG---------LLE-SGSSGS 273 (497)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~p~~~~---~~----~~~~~~-~~~~~~~~~~~~---~~~~~---------~~~-~~~~~~ 273 (497)
..+.+..+.+++.+..+++.|..+. .. ..+++. ....+..+++.+ .+..+ ..+ .++++.
T Consensus 179 ~~a~~v~l~~i~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (437)
T TIGR00939 179 GTPCVVQLICIVCYLLLPKLPFARYYLQKKLDKGAGEDETKGELRSKAEQNGIPHGGDQPSPTLVLDWEKEPESPDEPQK 258 (437)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccCCccchh
Confidence 3344434444555555554432110 00 000000 000000000000 00000 000 001111
Q ss_pred hhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcc-hhhHHHhhhhhhhhhhhhhhHHhHHh
Q 010904 274 LQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHK-TAGILSTIFDIGGVFGGILAGLISDM 352 (497)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~g~l~dr 352 (497)
+.+.+.++++|+ +|...+..++.++.. ...+|-+..+....+.+.+.. ..-.....+.++..+|+.+..+.. +
T Consensus 259 ~~~~~~~~v~kk--i~~~~~~vf~~F~vT---L~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~ 332 (437)
T TIGR00939 259 PLKTSVWVVFTK--VWLLAFSVVFVFTVT---LSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-W 332 (437)
T ss_pred cccCcHHHHHHH--HHHHHHHHHHHHHHH---HHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-e
Confidence 123345555543 455555555443333 334555543321000123332 344567788999999998665431 1
Q ss_pred hhhh-hHHHHHHHHHH--HHHHHHHhhc-------cCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccc
Q 010904 353 IEAR-AVTSVAFLLLS--IPALVLYRTY-------GSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSR 422 (497)
Q Consensus 353 ~~~~-~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (497)
-++| +.+.+..+.=. +..+++.-.. .-.+.+..++..+++|+..|-..+..+....+.+++++| +
T Consensus 333 p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~-----e 407 (437)
T TIGR00939 333 PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHER-----E 407 (437)
T ss_pred eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHH-----H
Confidence 1112 12222221111 1111111111 013556667778888998888777777777777665443 4
Q ss_pred hhHHHHHHHhhhhhhhhhhhh
Q 010904 423 ALATVTAIIDGTGSVGAALGP 443 (497)
Q Consensus 423 ~~g~~~g~~~~~~~~g~~~~~ 443 (497)
..|..+++ +-.+|-.+|.
T Consensus 408 ~aG~~~~~---~l~~Gl~~Gs 425 (437)
T TIGR00939 408 VAGALMVI---FLLVGLALGA 425 (437)
T ss_pred HHHHHHHH---HHHHHHHHHH
Confidence 44444443 3344444443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0014 Score=65.98 Aligned_cols=155 Identities=14% Similarity=0.101 Sum_probs=118.4
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccc-cCCchhhHHHHHHHHHHHH
Q 010904 54 PSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDT-IDLRLFLVFGMMGSGLFTI 132 (497)
Q Consensus 54 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~ 132 (497)
...+..++.+++ +.+ ...+.-..+.+.-......+.++.++|- +||-+++.++.++..++..
T Consensus 57 ~~nlv~ylt~~~----------~~~-------~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~ 119 (571)
T KOG1237|consen 57 VSNLVTYLTLEL----------HAS-------GGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLF 119 (571)
T ss_pred hhHHHHHHHHHh----------ccc-------hHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 355667777877 666 6667777888888888888999999995 6888999999999988876
Q ss_pred HHhhhhhhh--------------------hhHHHHHHHHHHHhhhhhcccchhhhhhhhcccC---cc---cchhhHHHH
Q 010904 133 IFGLAYWLS--------------------VHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFG---KA---KRGLIMGVW 186 (497)
Q Consensus 133 ~~~~~~~~~--------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~---~r~~~~~~~ 186 (497)
+..++.... ......+..+.-+..+|.|+.-|...++-+|-++ ++ .+..-+.++
T Consensus 120 ~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~ 199 (571)
T KOG1237|consen 120 GLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWF 199 (571)
T ss_pred HHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHH
Confidence 665542111 0123466777777888999999999999999998 32 233678888
Q ss_pred HHHhhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHH
Q 010904 187 NSHTSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGV 225 (497)
Q Consensus 187 ~~~~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~ 225 (497)
....++|..++..+..+.. +.+|.+-|.+......+..+
T Consensus 200 yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~ 239 (571)
T KOG1237|consen 200 YFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAIL 239 (571)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHH
Confidence 9999999999988887875 58999999998877666533
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.3e-05 Score=66.22 Aligned_cols=237 Identities=16% Similarity=0.166 Sum_probs=120.0
Q ss_pred ccchhhHHHHHHHhhhHHHHHH--HHhh-hHh---hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhh
Q 010904 177 AKRGLIMGVWNSHTSIGNIIGS--VLAS-GVL---EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELM 250 (497)
Q Consensus 177 ~~r~~~~~~~~~~~~~G~~~g~--~~~~-~l~---~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 250 (497)
++|+....+...++++|.++.- .+-. -.. ..+|++.+.+.+++.++..++..++=.|- +...+.+.++.
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~f--d~~~~~~k~~k--- 76 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNF--DIYSPKEKQEK--- 76 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cccCccccccc---
Confidence 5777778888888999987753 3322 111 24699999999888877655554442221 11111100000
Q ss_pred hhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhcccCC----C
Q 010904 251 NVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYT--FLYWLPFYIRHTAVAGVHL----S 324 (497)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~----s 324 (497)
++...+.+....+.+|++..|...+........... ...+........+ .+. +
T Consensus 77 ------------------~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~V~p~t~~~~~~~~~~s~---~ni~~~~~ 135 (267)
T PF07672_consen 77 ------------------ENSTLSKKPSYKSILKEKETWKWILIYGIWLVVVVFPFTPSWFNILIWISP---ANIKSVVS 135 (267)
T ss_pred ------------------ccccccccchHHHHHccchHHHHHHHHHHHheeEEEeccchhHhHhhhcCc---cccccccc
Confidence 001122345688999999998877766655432211 1112221222110 111 1
Q ss_pred cch----hhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHH-----HHHHHHHhhccCc--hhHHHHHHHHHHh
Q 010904 325 HKT----AGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLS-----IPALVLYRTYGSI--SMITNIPLMFLSG 393 (497)
Q Consensus 325 ~~~----~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~g 393 (497)
... ......++..+..+|-+..|...+..-+||..+.....++ +..+......... +....++..++.|
T Consensus 136 ~~~~~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G 215 (267)
T PF07672_consen 136 GGGFNWIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAG 215 (267)
T ss_pred ccccchhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHH
Confidence 111 1223334444555666777777766544544443332222 2222211211111 2444556666777
Q ss_pred hhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcc
Q 010904 394 LLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLL 445 (497)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 445 (497)
++.-+.++.+..... +.... +++..|...|+...++++.-.+.-.+
T Consensus 216 ~f~WgiQ~ViL~lPh-EyK~~-----~pk~ig~~Fg~iWGfGY~~yTi~~Ii 261 (267)
T PF07672_consen 216 FFLWGIQGVILNLPH-EYKGY-----NPKKIGIQFGLIWGFGYIFYTIYDII 261 (267)
T ss_pred HHHHhhhHHHhcChh-hhcCC-----CcceehhHHHHHHHHHHHHHHHHHHH
Confidence 777666655543332 23222 25667888888887777765554443
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00024 Score=63.27 Aligned_cols=330 Identities=14% Similarity=0.109 Sum_probs=168.1
Q ss_pred chhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhh
Q 010904 89 LGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVA 168 (497)
Q Consensus 89 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 168 (497)
.|.+.-+-.+...+..+.+..+.||+.--.=..+..++.+.+.++.+++ ++.++=+.+-.+..++.|.....-.+
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs-----~s~~~sL~GV~~aSissGlGEiTFL~ 138 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFS-----NSVPMSLLGVVFASISSGLGEITFLA 138 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEec-----cchhHHHhhhhhhhhcCCcceeehhh
Confidence 4556666667777778888888998766555666777788888999998 99999999999988888876655444
Q ss_pred hhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh---cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChh
Q 010904 169 VLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE---FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGK 245 (497)
Q Consensus 169 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 245 (497)
+ +..++ ....+.+..+.+.+.++|..--..+.+ ..-|...++...+..+.+...++.+++++.... ...++
T Consensus 139 l-ss~Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~-ptl~~ 212 (409)
T KOG3880|consen 139 L-SSRYP----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYS-PTLQP 212 (409)
T ss_pred h-hccCC----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccccC-CCcCc
Confidence 3 33333 334555666666666777654444443 456777777777777766666666655333221 22111
Q ss_pred hhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 010904 246 EVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKL-PRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLS 324 (497)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s 324 (497)
..+ ...+.... .+..+.+ ...++....++.++. +.....++-....++..|.++.-+...+.-...+|+..+
T Consensus 213 ~~~----~~~~~~~~--~~a~e~~-sv~s~~~~~~e~~~~i~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls 285 (409)
T KOG3880|consen 213 STE----IIPSQYLP--FEAAEEK-SVPSRRLGLKETLKRIKPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLS 285 (409)
T ss_pred cce----eccCCCCc--ccccccc-cCchhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccc
Confidence 110 00000000 0000000 011112222222221 112222222222333333332221111111001112222
Q ss_pred c-chhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhH
Q 010904 325 H-KTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLI 403 (497)
Q Consensus 325 ~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 403 (497)
. .|.-++...+.+|..+.+=..... +...-+.+.+.-+.-.+..+.-......++.+..++..+.=|+..|..+...
T Consensus 286 ~~sqYRwyqvlYQlGVFiSRSS~~~~--~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNT 363 (409)
T KOG3880|consen 286 KDSQYRWYQVLYQLGVFISRSSINLF--TMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNT 363 (409)
T ss_pred hhhcchhhheeeeeeEEEEeccceEE--echHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHH
Confidence 2 234566666666655544221111 0111122222111111111111112223566666666677788888888888
Q ss_pred HHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhccc
Q 010904 404 TTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLA 446 (497)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 446 (497)
.--+.+..++++| -.+++.....-.+|..++..+.
T Consensus 364 f~~i~~e~~pd~r--------Efamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 364 FHNIHKETEPDVR--------EFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred HHHHhhcCCchHH--------HHhHhhheecchhhHHHHHHHh
Confidence 7778787777543 5677777777777766665553
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00015 Score=71.09 Aligned_cols=158 Identities=21% Similarity=0.240 Sum_probs=105.8
Q ss_pred HHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhh----hhhH-HHHHHHHHHHHHHHHHhhcc-Cchh
Q 010904 309 LPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIE----ARAV-TSVAFLLLSIPALVLYRTYG-SISM 382 (497)
Q Consensus 309 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~----~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~ 382 (497)
...++++. +|+++.+...+.....+...+ .++.|.++|-+. |||. ++++.++..+..+.+..... ..+.
T Consensus 12 ~~~~l~~~----l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~ 86 (433)
T PF03092_consen 12 IYPFLKDD----LGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA 86 (433)
T ss_pred HHHHHHHH----cCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 34456666 899999999988888887775 688999999873 4444 44555555444443333222 1234
Q ss_pred HHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-CchHHHHHH
Q 010904 383 ITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GWNSVFFML 461 (497)
Q Consensus 383 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~ 461 (497)
....+.+++..++....-...-+.+.|....+ ++.+|...+.......+|+.++..+.|.+.+. +++..|.+.
T Consensus 87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~------p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 87 AIAVVLLFLASFGYAFADVAADALVVELARRE------PESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC------CchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 44445555555555555555555666655332 23368888999999999999999999999888 888888888
Q ss_pred HHHHHHHHHHHHHHHh
Q 010904 462 IVSILFAGMFLIRIVK 477 (497)
Q Consensus 462 ~~~~~~~~~~~~~~~~ 477 (497)
+++..+..+..+....
T Consensus 161 ~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 161 AALPLLMLIVALFLLE 176 (433)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 7777766555555443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00017 Score=70.50 Aligned_cols=126 Identities=13% Similarity=0.265 Sum_probs=111.0
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcc-ccccccCCchhhHHHHHHHHHHHHHHh
Q 010904 57 VKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAG-HVGDTIDLRLFLVFGMMGSGLFTIIFG 135 (497)
Q Consensus 57 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g-~l~dr~Grr~~l~~~~~~~~i~~~~~~ 135 (497)
..-++...+ +|+ +.+.+...+...+...+++++.. .+...+|-|+++..|+....+...+.+
T Consensus 264 ~~~yl~~~f----------~w~-------~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~a 326 (463)
T KOG2816|consen 264 LLLYLKAKF----------GWN-------KKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFA 326 (463)
T ss_pred EEEEEeeec----------CcC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHH
Confidence 344566666 888 99999888888888888888877 788889999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh
Q 010904 136 LAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL 205 (497)
Q Consensus 136 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 205 (497)
++ ++.|+++....+.++. ....|+..+.++.+..++++|+++++......+..+++|.+-+.+.
T Consensus 327 f~-----~~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 327 FA-----TETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred Hh-----ccchhhhHHHHHHHhh-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 99 9999999998888865 5667999999999999999999999999999999999998877765
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00063 Score=64.37 Aligned_cols=153 Identities=16% Similarity=0.034 Sum_probs=94.8
Q ss_pred chHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHH
Q 010904 287 RVAPFAFCLFFSKLVA---YTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAF 363 (497)
Q Consensus 287 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~ 363 (497)
+-|.+.+...+....+ +....-+..+.++. || +...+-+...++.+..++..+.+.|+.||+|-|....++.
T Consensus 42 rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~----Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 42 RRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSF----YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred hHhHHHHHHHHHHhcCcchheeehhHHHHHHHH----hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 3455555444444433 22223344456665 67 6666777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC---chhH--HHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhh
Q 010904 364 LLLSIPALVLYRTYGS---ISMI--TNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVG 438 (497)
Q Consensus 364 ~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 438 (497)
.+-+++..+=...... +..+ .......+.+...........-.....+++++| +++..+..+.+.+|
T Consensus 117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qr--------a~A~~~~v~~n~LG 188 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQR--------AIATVLGVMGNPLG 188 (480)
T ss_pred HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchh--------hhhhhHHHhcchHH
Confidence 8888887664432222 2222 333344444443333333333344455676543 77777777777787
Q ss_pred hhhhhcccceeecc
Q 010904 439 AALGPLLAGYISTR 452 (497)
Q Consensus 439 ~~~~~~~~g~l~~~ 452 (497)
.+++..+-..+..+
T Consensus 189 vavg~llppilV~~ 202 (480)
T KOG2563|consen 189 VAVGFLLPPILVPS 202 (480)
T ss_pred HHHHhhccceecCC
Confidence 77777766666554
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.64 E-value=4.3e-05 Score=54.21 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=50.2
Q ss_pred HHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHH
Q 010904 45 ASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGM 124 (497)
Q Consensus 45 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~ 124 (497)
+..+.....+-+..|...++. |++ ..|+|.+.++..+...++.+++|.++||+++++.++...
T Consensus 10 f~~f~~~g~~~Pfl~~~~~~~----------Gl~-------~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~ 72 (77)
T PF12832_consen 10 FFYFAALGCLYPFLPLYLKQL----------GLS-------PSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS 72 (77)
T ss_pred HHHHHHHHHHHhhhhHhhhhc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence 333333333444445555555 777 999999999999999999999999999999999887776
Q ss_pred HHH
Q 010904 125 MGS 127 (497)
Q Consensus 125 ~~~ 127 (497)
.++
T Consensus 73 ~~~ 75 (77)
T PF12832_consen 73 LFM 75 (77)
T ss_pred HHH
Confidence 554
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0012 Score=62.11 Aligned_cols=250 Identities=17% Similarity=0.134 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHh---hhHh-hcC-cceeeehhh
Q 010904 143 HLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLA---SGVL-EFG-WGWSFVLPG 217 (497)
Q Consensus 143 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~---~~l~-~~g-wr~~f~~~~ 217 (497)
..++..++.-.+.+.+.|..........++. |++.-...+ .+.++++.+..++. .... +.. =-..|...+
T Consensus 115 ~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytqavm----~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s 189 (406)
T KOG1479|consen 115 GFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQAVM----SGQALAGTLTSLLRILTKAAFSDSRTSALIYFITS 189 (406)
T ss_pred hhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHHHHH----hcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHH
Confidence 4566777777888888887777766655554 544332222 23333333322221 1111 111 123344445
Q ss_pred HHHHHHHHHHHhheecCCcCCCC--CCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHH
Q 010904 218 FLVIFVGVFVFLFLVVRPEDLGF--ELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCL 295 (497)
Q Consensus 218 ~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (497)
.+..+.+++.+..+|+.|-.+.. +..++.. +. .+++.+.+.+ .+....+.++++++- +.....
T Consensus 190 ~~~~llC~i~y~~l~~lpf~~yy~~~~~~~~~----~l-~~~~~~~~~~-------~~~~~~~~~~i~~k~--~~~~~~- 254 (406)
T KOG1479|consen 190 TVILLLCFVLYLVLPKLPFVRYYREKAGSIGS----KL-AAEGIESDSS-------LSNEDDSLWDIFKKI--KDLAFN- 254 (406)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHhhhcccccc----cc-cccccccccc-------cccccchHHHHHHHH--HHHhhc-
Confidence 55555555555566554432111 1111100 00 0000111111 011111344444431 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhh-hhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHH
Q 010904 296 FFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTI-FDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLY 374 (497)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 374 (497)
....+......+|-+..+.-.. ...+....-+.... +.+...+|.+...++-++-+|........=...+..+.+.
T Consensus 255 --i~lvy~VTLsiFPg~~~~~~~~-~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~c 331 (406)
T KOG1479|consen 255 --IFLVYFVTLSIFPGFCSEVKSS-GLLGDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLC 331 (406)
T ss_pred --hheeeeeeeEecchhhcccccC-cccchhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHh
Confidence 2222333445567777765111 11123334445555 7888888877776655544333333333323333333321
Q ss_pred hh----ccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhccccc
Q 010904 375 RT----YGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQD 415 (497)
Q Consensus 375 ~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 415 (497)
-. ....+.++.+....++|+..|-..+..+.+.++.+++++
T Consensus 332 n~~~~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e 376 (406)
T KOG1479|consen 332 NYPPLPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSE 376 (406)
T ss_pred ccCCCCceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHH
Confidence 11 112456677788888999988888888888888887765
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0099 Score=53.91 Aligned_cols=70 Identities=10% Similarity=0.002 Sum_probs=53.4
Q ss_pred HHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccC
Q 010904 100 YSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFG 175 (497)
Q Consensus 100 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 175 (497)
.+.++++.+.+..++|-|+.+.++...+...-..--. +.+..++-.-...|++.+..+..--+++++.-.
T Consensus 71 l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 71 LIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLE------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc------hhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 3444555558899999999999998887764433322 788899999999999999999887777766553
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00043 Score=66.80 Aligned_cols=112 Identities=15% Similarity=0.196 Sum_probs=86.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhh----hhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcc---cchhhHHHHHHHh
Q 010904 118 LFLVFGMMGSGLFTIIFGLAYWLS----VHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKA---KRGLIMGVWNSHT 190 (497)
Q Consensus 118 ~~l~~~~~~~~i~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 190 (497)
|+++++.++..+|.++..++.... ..+.+.++++-.+.++|.|+.-|...++.+|.++++ +|.+...++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567889999999998865542111 123468899999999999999999999999999865 4667788899999
Q ss_pred hhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhh
Q 010904 191 SIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLF 230 (497)
Q Consensus 191 ~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~ 230 (497)
++|..+++.+.+++. ++||.+.|.+.++..++. ++.+..
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~-~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLA-LIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHH-HHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHH-HHHHHh
Confidence 999999999999988 589999999988877665 434333
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0061 Score=61.10 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHH-HHHHHH-H
Q 010904 291 FAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSV-AFLLLS-I 368 (497)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-~~~~~~-~ 368 (497)
+.+..++..++...+.......+... +|-+....+.+.+.+..+..+|+.+++++.++..++..... ...+.+ +
T Consensus 19 l~~~~f~sg~~~L~yEv~~~r~l~~~----~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~ 94 (521)
T PRK03612 19 LLAAVFVCAACGLVYELLLGTLASYL----LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGL 94 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666677766 78888888888888888888888888877644333222111 111111 1
Q ss_pred HHHHHHhhcc--CchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhccc
Q 010904 369 PALVLYRTYG--SISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLA 446 (497)
Q Consensus 369 ~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 446 (497)
...++..... .......+...++.++..|+..|.......+... +..|...|-......+|+++|+.+.
T Consensus 95 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~---------~~~g~~~g~ly~~ntlGa~~G~l~~ 165 (521)
T PRK03612 95 SALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD---------QHLGHNVATVLAADYLGALVGGLAF 165 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------cchhhhhhhhHhHHhHHHHHHHHHH
Confidence 1111111000 0111222334455667777776665554433221 1235667777788888999998888
Q ss_pred ceeecc--CchHHHHHHHHHHHHHHHHH
Q 010904 447 GYISTR--GWNSVFFMLIVSILFAGMFL 472 (497)
Q Consensus 447 g~l~~~--g~~~~~~~~~~~~~~~~~~~ 472 (497)
+++.-. |......+.+.+.++++++.
T Consensus 166 ~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 166 PFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 876553 66555555555554444433
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0027 Score=63.63 Aligned_cols=140 Identities=14% Similarity=0.175 Sum_probs=82.1
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHH--HH-HHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhccc
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMG--SG-LFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIG 162 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~--~~-i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 162 (497)
..+.+.+.++++.|.++|+.+++++.++--++.. .+-+.+ .+ ++..+..............++..-++.++..|+.
T Consensus 49 ~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 127 (521)
T PRK03612 49 VTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGME 127 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999988743322221 111111 11 1111111110000011122344455677888888
Q ss_pred chhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh--hcCcceeeehhhHHHHHHHHHH
Q 010904 163 WPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL--EFGWGWSFVLPGFLVIFVGVFV 227 (497)
Q Consensus 163 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--~~gwr~~f~~~~~~~~~~~~~~ 227 (497)
.|....+..+.. .++-++..|-......+|.++|.++.+++. ..|-....++.+.+.++.+++.
T Consensus 128 ~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 128 IPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred HHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 888777665433 234567788889999999999998888776 3564444444455555544433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.13 E-value=9.8e-05 Score=74.08 Aligned_cols=166 Identities=17% Similarity=0.237 Sum_probs=2.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhc--
Q 010904 300 LVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTY-- 377 (497)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-- 377 (497)
....++..-.-.-+++. ++++..+.|++.+.+-++.++..++..++.+|..|-+++..+.++++++.++..+..
T Consensus 16 ~~~~g~~~~~lttiErR----F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~ 91 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERR----FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFL 91 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhh
Confidence 33334433333344555 899999999999999999999999999999998888888888888888887765311
Q ss_pred -c--------------------C--------------------c----hhHHHHHHHHHHhhhccCcchhHHHHHHhhcc
Q 010904 378 -G--------------------S--------------------I----SMITNIPLMFLSGLLVNGPYSLITTAVAADLG 412 (497)
Q Consensus 378 -~--------------------~--------------------~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 412 (497)
+ . . ....+++..++.|++....++...+++-|.++
T Consensus 92 ~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~ 171 (539)
T PF03137_consen 92 SGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVS 171 (539)
T ss_dssp ------------------------------------------------------------SSS-----------------
T ss_pred cCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccc
Confidence 0 0 0 02344556667777777777777777777776
Q ss_pred cccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-----------------------CchHHHHHHHHHHHHHH
Q 010904 413 TQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-----------------------GWNSVFFMLIVSILFAG 469 (497)
Q Consensus 413 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-----------------------g~~~~~~~~~~~~~~~~ 469 (497)
+ ++.+...|+......+|-++|-.+++...+. .|...|.+.+.+.++..
T Consensus 172 ~--------~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~a 243 (539)
T PF03137_consen 172 K--------KNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSA 243 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c--------ccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 5 4457788888888777777776666655532 14455556666666666
Q ss_pred HHHHHHHh
Q 010904 470 MFLIRIVK 477 (497)
Q Consensus 470 ~~~~~~~~ 477 (497)
+....+.+
T Consensus 244 ipl~~FPk 251 (539)
T PF03137_consen 244 IPLFFFPK 251 (539)
T ss_dssp --------
T ss_pred HHHHcCCc
Confidence 55555543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.021 Score=46.86 Aligned_cols=102 Identities=14% Similarity=0.026 Sum_probs=73.5
Q ss_pred HhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhc
Q 010904 332 STIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADL 411 (497)
Q Consensus 332 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 411 (497)
.++......++.++.+.+.+++|.|+.++++.+...+-...... .+.+..+....+.|++.+..+.....++.+..
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~----~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s 118 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY----PNSYTLYPASALLGFGAALLWTAQGTYLTSYS 118 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence 44555666677788889999999999999988887765544433 45677788888999999999988888877665
Q ss_pred ccccccccccchhHHHHHHHhhhhhhhhhhhhcc
Q 010904 412 GTQDLIKGNSRALATVTAIIDGTGSVGAALGPLL 445 (497)
Q Consensus 412 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 445 (497)
.+ +.+++-.++...+.+.+..+|..+
T Consensus 119 ~~--------~~~~~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 119 TE--------ETIGRNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred CH--------HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 54 334666666666666655555443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.025 Score=52.42 Aligned_cols=153 Identities=25% Similarity=0.364 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCc--chhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 010904 300 LVAYTFLYWLPFYIRHTAVAGVHLSH--KTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTY 377 (497)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (497)
..........+.+..+. +.+. ...++......+...++.++.|++.||.|||+....+......+.+......
T Consensus 16 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
T COG0477 16 LDLGLLSPALPLLLSTL-----SLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP 90 (338)
T ss_pred HhcchHHHHHHHHHHHc-----CCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc
Confidence 33334445566666663 4444 4678888888999999889999999999998777666654333333333321
Q ss_pred cCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhh-hhhhhhhhhhcccceeecc---C
Q 010904 378 GSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDG-TGSVGAALGPLLAGYISTR---G 453 (497)
Q Consensus 378 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~~~~~~~g~l~~~---g 453 (497)
. ...+.........|++.+...+.......+..+. + +.++...+.... ...++..++|.+.+.+.+. +
T Consensus 91 ~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (338)
T COG0477 91 N-VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE--A-----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG 162 (338)
T ss_pred c-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc--h-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 2345555555557888877778888888888764 1 234777777776 4667777777665555543 6
Q ss_pred chHHHHHHHHHH
Q 010904 454 WNSVFFMLIVSI 465 (497)
Q Consensus 454 ~~~~~~~~~~~~ 465 (497)
|+..+.......
T Consensus 163 ~~~~~~~~~~~~ 174 (338)
T COG0477 163 WRAAFLLAALLG 174 (338)
T ss_pred hHHHHHHHHHHH
Confidence 766444444433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.053 Score=52.69 Aligned_cols=183 Identities=17% Similarity=0.147 Sum_probs=107.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHH--
Q 010904 287 RVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFL-- 364 (497)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~-- 364 (497)
..+.+....++..+..-...+-.|.++.+. +.-+..-.+..-..-.+..++.++..|...||..|.+.......
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i----~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Q 78 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISI----FPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQ 78 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHH
Confidence 346677888888888888888999999998 55555556666666677788888899999999988776543321
Q ss_pred --HHHHHHHHHH--hhccCc----h--hHHHHHHHHHHhhhccCcchhHHHHHHhh-cccccccccccchhHHHHHHHhh
Q 010904 365 --LLSIPALVLY--RTYGSI----S--MITNIPLMFLSGLLVNGPYSLITTAVAAD-LGTQDLIKGNSRALATVTAIIDG 433 (497)
Q Consensus 365 --~~~~~~~~~~--~~~~~~----~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~ 433 (497)
..++++.++. +..... + ....+....+.|.............+-++ +..- -.++++.....++.+.-
T Consensus 79 n~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi--~~~~~~~La~~NA~mRR 156 (432)
T PF06963_consen 79 NLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVI--AGGDPGALARMNATMRR 156 (432)
T ss_pred HHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhh--cCCChhhHHHHHHHHHH
Confidence 1122222211 111111 1 11112222222221111111110000000 0000 01124555677777777
Q ss_pred hhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHH
Q 010904 434 TGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 434 ~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
+-.+...++|.+.|.+.+. ++.....+.++..+++..+=+++
T Consensus 157 IDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 157 IDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred HHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778999999999999986 88888888888877776654443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0021 Score=62.05 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCc------hhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHH
Q 010904 357 AVTSVAFLLLSIPALVLYRTYGSI------SMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAI 430 (497)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 430 (497)
+++.++.++..++.+++....... +...+++.+.+.+++.|+.=+...+...+.+++++ .+.+.+....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~-----~~~~~~~F~~ 76 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD-----DSRRDSFFNW 76 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT-----TTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc-----hhhhhhhHHH
Confidence 456677777777776644322222 23577888888999999999999999999998764 2555778889
Q ss_pred Hhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHH
Q 010904 431 IDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 431 ~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
.....++|..+++.+.+++.++ +|...|.+.++..+++.+.++.-
T Consensus 77 fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 77 FYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 9999999999999999999988 99999999999888887765543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.017 Score=55.03 Aligned_cols=116 Identities=9% Similarity=0.107 Sum_probs=82.6
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
..+..+....|.+|-.++.--.. +. |+ |++.+.+.+-..-..++..-+.+...++.|..++.-+..|+..|..++-
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~-~~-ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVN 355 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLP-FF-RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVN 355 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhccee-ee-eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 56677777777777666544322 21 33 4443333333322222222222233488999999999999999999999
Q ss_pred hhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh
Q 010904 166 VVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL 205 (497)
Q Consensus 166 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 205 (497)
....+.|-.++++|..++|....+.++|..++.+++-.+-
T Consensus 356 tF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 356 TFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998887765
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0044 Score=58.88 Aligned_cols=147 Identities=17% Similarity=0.072 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHh----hhhhhHHHHHHH
Q 010904 289 APFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDM----IEARAVTSVAFL 364 (497)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~~~~~~ 364 (497)
.......+...+....-..+.|.|+++. |.+....+.+.....+.+++.+++.|..+|| +||||..+....
T Consensus 35 i~v~~ia~Gvqf~wA~elsy~tPyl~~l-----Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s 109 (498)
T KOG0637|consen 35 ISVASIAAGVQFGWALELSYLTPYLQSL-----GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGS 109 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHc-----CCCcccccccccccccccceecccccccccccccccccccchHHHhh
Confidence 3444445555566666678999999995 9999999999999999999999999999996 688888766554
Q ss_pred HHH-HHHHHHHhhc-------cCc-------hhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHH
Q 010904 365 LLS-IPALVLYRTY-------GSI-------SMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTA 429 (497)
Q Consensus 365 ~~~-~~~~~~~~~~-------~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 429 (497)
+.. +..+++.+.. ... .....++.+.+.-+.......+.-+...+...++++ +.+ +++
T Consensus 110 ~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~-----~~~--Ans 182 (498)
T KOG0637|consen 110 LLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK-----KTR--ANS 182 (498)
T ss_pred HHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh-----hhc--cch
Confidence 444 3333332211 001 112333444445556667788888888888877653 322 677
Q ss_pred HHhhhhhhhhhhhhcccc
Q 010904 430 IIDGTGSVGAALGPLLAG 447 (497)
Q Consensus 430 ~~~~~~~~g~~~~~~~~g 447 (497)
....+..+|+.+|=...+
T Consensus 183 ~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 183 VFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hHHHHHHhcceeeeeccc
Confidence 777777777777655544
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.009 Score=42.85 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHh
Q 010904 299 KLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYR 375 (497)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 375 (497)
...-+.+...+|...++ .++|..+.|++.+...+|.++|.+...++.++..+++.+..+.+...+....+.+
T Consensus 5 GigRFayTplLP~M~~~-----~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQAD-----GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred hhHHHHHHhHhHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777789998888 5999999999999999999999999999999888788888887777777766655
|
Note that many members are hypothetical proteins. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0006 Score=63.70 Aligned_cols=107 Identities=21% Similarity=0.159 Sum_probs=3.4
Q ss_pred HHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHH--HHHHHHHhhc--------cCchhHHHHHHHHHHhhhccCc
Q 010904 330 ILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLS--IPALVLYRTY--------GSISMITNIPLMFLSGLLVNGP 399 (497)
Q Consensus 330 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~ 399 (497)
..+..++++..+|+.+.++..-+..+++.+.+..+.=. +..+++.-.. .-.+.++.++.++++|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 35667899999999988874322113333322211111 1111111011 0124456677788899999888
Q ss_pred chhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhc
Q 010904 400 YSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPL 444 (497)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 444 (497)
.+..+...++.+++++| +..|..+++. -.+|-.+|..
T Consensus 266 ~tl~m~~~p~~v~~~e~-----e~aG~~~~~~---L~~Gl~~Gs~ 302 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEER-----ELAGSVMSFF---LSFGLFIGSV 302 (309)
T ss_dssp -HHHH----------------------------------------
T ss_pred hhceeeeCCCcCCHHHH-----HHHHHHHHHH---HHHHHHHHHH
Confidence 88888888888876553 4445444443 3444444443
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0067 Score=61.77 Aligned_cols=162 Identities=15% Similarity=0.229 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhc------
Q 010904 304 TFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTY------ 377 (497)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~------ 377 (497)
++..-.-.-+++. ++++..+.|++...+-++..+...+..+...|..|-+++.++.++++++.++..+..
T Consensus 114 ~y~~s~IttiErR----F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y 189 (735)
T KOG3626|consen 114 GYFNSVITTIERR----FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPY 189 (735)
T ss_pred hhhhhhhhhhhhh----cCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcc
Confidence 4444444555666 899999999999999999999999999999999999999999999988888766421
Q ss_pred -------------c---------------------------Cc---hhHHHHHHHHHHhhhccCcchhHHHHHHhhcccc
Q 010904 378 -------------G---------------------------SI---SMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQ 414 (497)
Q Consensus 378 -------------~---------------------------~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 414 (497)
+ .. .+..+++..++.|++....++...+++-+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~- 268 (735)
T KOG3626|consen 190 EYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKK- 268 (735)
T ss_pred hhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccc-
Confidence 0 00 012445566777887777777777777666554
Q ss_pred cccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc--------------------CchHHHHHHHHHHHHHHHHHHH
Q 010904 415 DLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR--------------------GWNSVFFMLIVSILFAGMFLIR 474 (497)
Q Consensus 415 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--------------------g~~~~~~~~~~~~~~~~~~~~~ 474 (497)
++.....|+..++..+|=++|-.+++...+. -|...|++.+.+.++..+.+++
T Consensus 269 -------~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~ 341 (735)
T KOG3626|consen 269 -------KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF 341 (735)
T ss_pred -------cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3447778877777776666655554443321 2566677777777777777666
Q ss_pred HHh
Q 010904 475 IVK 477 (497)
Q Consensus 475 ~~~ 477 (497)
+.+
T Consensus 342 fPk 344 (735)
T KOG3626|consen 342 FPK 344 (735)
T ss_pred Ccc
Confidence 644
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.063 Score=51.36 Aligned_cols=159 Identities=13% Similarity=0.126 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhhhcccCCCcchhhHHHh-hhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhH
Q 010904 305 FLYWLPFYIRHTAVAGVHLSHKTAGILST-IFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMI 383 (497)
Q Consensus 305 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (497)
...++..|+.+.. +|++..+..--.. ...-..++..++...+.|.++.|..++...+...+...++.+ ..+..
T Consensus 22 sEPfl~~yL~~~~---kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~---~~sv~ 95 (412)
T PF01770_consen 22 SEPFLTPYLTGPD---KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF---GTSVL 95 (412)
T ss_pred CCccchHHHcCCc---cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---HCcHH
Confidence 3456777777642 5888877754333 333344555567788999999999988887776666666555 26777
Q ss_pred HHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc---CchHHHHH
Q 010904 384 TNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR---GWNSVFFM 460 (497)
Q Consensus 384 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---g~~~~~~~ 460 (497)
.+-+.-++.|+.... -...++++-..+++ ++.-++.+......-+|..++..++-.+... +|....++
T Consensus 96 ~mq~~q~~yg~~~a~-evay~sYiys~v~~--------~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~i 166 (412)
T PF01770_consen 96 AMQLMQFFYGLATAA-EVAYYSYIYSVVDK--------EHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYI 166 (412)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHheeecCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 777778888877654 33444555555554 3335556666665555555555554444442 67777777
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 010904 461 LIVSILFAGMFLIRIVKA 478 (497)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~ 478 (497)
......++.+..++++++
T Consensus 167 sl~~~~~a~~~~~fLP~~ 184 (412)
T PF01770_consen 167 SLASVSLALLIALFLPMP 184 (412)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 776666666666666543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.14 Score=50.35 Aligned_cols=117 Identities=10% Similarity=-0.042 Sum_probs=70.3
Q ss_pred chhhHHHhhhhhhhhhh-hhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhh-ccC-c----------------------
Q 010904 326 KTAGILSTIFDIGGVFG-GILAGLISDMIEARAVTSVAFLLLSIPALVLYRT-YGS-I---------------------- 380 (497)
Q Consensus 326 ~~~g~~~~~~~~~~~~~-~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~---------------------- 380 (497)
+...++.....+...+. .++.+++++|++|++.............+++.+. .+. +
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 45566665554544444 7889999999999988766555444444433322 000 0
Q ss_pred ----hhHHHHHHHHHHhhhccCcch-hHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceee
Q 010904 381 ----SMITNIPLMFLSGLLVNGPYS-LITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYIS 450 (497)
Q Consensus 381 ----~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 450 (497)
+.|...+..+...+......+ .....+.+.... ++..+-.++....+++|..+++.+..++.
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~--------~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTI--------DEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222233333333344 445555555554 44578899999999999999998887765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.094 Score=53.10 Aligned_cols=177 Identities=15% Similarity=0.116 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhh-hhhhHHHHHHHHHHHHH
Q 010904 292 AFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMI-EARAVTSVAFLLLSIPA 370 (497)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~~~~~~~ 370 (497)
...-.+...++++....+..|+.+. ++.+...+.-......-......+.+++++|-+ ||-+++.++..+..++.
T Consensus 43 l~~e~~e~~a~~g~~~nlv~ylt~~----~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~ 118 (571)
T KOG1237|consen 43 LGNEVLERLAFFGLVSNLVTYLTLE----LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGL 118 (571)
T ss_pred HHHHHHHHHhHhcchhHHHHHHHHH----hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3334455566667777888888887 777776666666666666666778899999976 88888877776666665
Q ss_pred HHHHhhc------c-------C----c--h---hHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHH
Q 010904 371 LVLYRTY------G-------S----I--S---MITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVT 428 (497)
Q Consensus 371 ~~~~~~~------~-------~----~--~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 428 (497)
.++.... + . . + ...++..+-+..++.++.-+...+.-.+.++...+ .+.+....-+
T Consensus 119 ~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~--~~~~~~~~fF 196 (571)
T KOG1237|consen 119 FGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDP--VEVKGIPSFF 196 (571)
T ss_pred HHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCc--chhhCcccch
Confidence 4433211 0 0 0 1 12455566667778888888888888888883221 1123334667
Q ss_pred HHHhhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHH
Q 010904 429 AIIDGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIR 474 (497)
Q Consensus 429 g~~~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~ 474 (497)
.......++|..++..+.-++.++ +|...|.+..+..+++.++++.
T Consensus 197 nW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 197 NWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHc
Confidence 777778889999999998888877 9999998888888877766654
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.18 Score=49.20 Aligned_cols=110 Identities=7% Similarity=0.038 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhhccccc---cccCCchhhHHHHHHHHHHHHHHhhhhh-------------hhhhHHHHHHHHHHHhhhh
Q 010904 95 AFLTSYSVGMYFAGHVG---DTIDLRLFLVFGMMGSGLFTIIFGLAYW-------------LSVHLLVYFVGVQIFCGLF 158 (497)
Q Consensus 95 ~~~~~~~~~~~~~g~l~---dr~Grr~~l~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~l~~~r~l~G~~ 158 (497)
.-.+|..+++.+.+.+. +++||++.+.++..+..++.++.-...- ...+++...++.-++.|++
T Consensus 287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~ 366 (461)
T KOG3098|consen 287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFG 366 (461)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhH
Confidence 33344444445455555 5799999999999999888887766421 0123577888999999999
Q ss_pred hcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHh
Q 010904 159 QSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVL 205 (497)
Q Consensus 159 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 205 (497)
.+......+.++.+.+ +++|..+.++...-..++..++-.......
T Consensus 367 D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~ 412 (461)
T KOG3098|consen 367 DACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYLL 412 (461)
T ss_pred HHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999 578999999988888888877666555544
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.1 Score=44.13 Aligned_cols=114 Identities=15% Similarity=0.026 Sum_probs=76.9
Q ss_pred hhhHHHHHHHHHHHHhhccccccccCCc-hhhHHHHHHHHHHHHHHhhhhhh-------hhhHHHHHHHHHHHhhhhhcc
Q 010904 90 GELDLAFLTSYSVGMYFAGHVGDTIDLR-LFLVFGMMGSGLFTIIFGLAYWL-------SVHLLVYFVGVQIFCGLFQSI 161 (497)
Q Consensus 90 g~~~s~~~~~~~~~~~~~g~l~dr~Grr-~~l~~~~~~~~i~~~~~~~~~~~-------~~~~~~~l~~~r~l~G~~~~~ 161 (497)
-.....|.++-.+|..+..+.. .-++| +.+.+..+.-.+.--++.++... ..++-+..++..++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4556777788788877654431 11222 13333343333333222222111 124667777889999999999
Q ss_pred cchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhH
Q 010904 162 GWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGV 204 (497)
Q Consensus 162 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 204 (497)
....+..+..+..++++|..+-.+...+..+|..+|..++-.+
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9899899999999999999999999999999999998876544
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.8 Score=40.77 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=45.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHH-----hhhhhhHHH
Q 010904 286 PRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISD-----MIEARAVTS 360 (497)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~~~~~~~~ 360 (497)
+.+..+...+...+... +...-+|..++. .|.|-...+.....+.=-.+ .++...+.| |+||||..+
T Consensus 31 ~~illLl~LYllQGiP~-GL~~~iP~lL~a-----k~vSyt~~a~fS~ay~P~sL--KllWaPiVDs~y~k~~GrrksWv 102 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPL-GLIGAIPLLLQA-----KGVSYTSQAIFSFAYWPFSL--KLLWAPIVDSVYSKRFGRRKSWV 102 (510)
T ss_pred hhHHHHHHHHHHcCCch-hHhhhhHHHhcC-----CCcchhhhhhhhhhhhHHHH--HHHHHhhhHHHHHHhhcccccee
Confidence 34555555555555555 444488998886 47777666655443322221 356666777 999998755
Q ss_pred H-HHHHHHHHHHHH
Q 010904 361 V-AFLLLSIPALVL 373 (497)
Q Consensus 361 ~-~~~~~~~~~~~~ 373 (497)
+ ...+.+..+.++
T Consensus 103 vp~q~llG~~mllL 116 (510)
T KOG3574|consen 103 VPCQYLLGLFMLLL 116 (510)
T ss_pred eehHHHHHHHHHHH
Confidence 4 333333333333
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.07 E-value=10 Score=35.37 Aligned_cols=140 Identities=13% Similarity=0.100 Sum_probs=69.2
Q ss_pred cCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHH----HHHH--HHHHHHHHHHHhhccCchhHHHHHHHHHHhh
Q 010904 321 VHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVT----SVAF--LLLSIPALVLYRTYGSISMITNIPLMFLSGL 394 (497)
Q Consensus 321 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 394 (497)
.|-+..+.+.+.+.+-...-+|+.+.-++.|.--.-+.+ ..+. .+.+....+.+......+.+.++...+.+|.
T Consensus 38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~ 117 (508)
T COG4262 38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV 117 (508)
T ss_pred cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 455556666666655555555555555444432111111 1111 1111111111112223466777888888999
Q ss_pred hccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc--CchHHHHHHHHHHHHHHH
Q 010904 395 LVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFMLIVSILFAGM 470 (497)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~ 470 (497)
..|.-.|..+.+........ ....+.....-++|...+.....++.-. |..-.-.+.+.+-+++++
T Consensus 118 LVG~EiPL~mrml~~r~a~~----------k~~~s~vl~~DYLGal~~gLl~p~lllP~LGl~rta~laG~~Nl~aAv 185 (508)
T COG4262 118 LVGAEIPLLMRMLQRRQAKA----------KDLGSRVLTLDYLGALAGGLLWPFLLLPRLGLVRTAALAGLCNLAAAV 185 (508)
T ss_pred HHhcchHHHHHHHHHHHHHH----------HhhhhhhhhhHhhhhhhHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Confidence 99999888888776633221 1222233334667766666655554332 444333444444444443
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.89 E-value=1.7 Score=40.19 Aligned_cols=86 Identities=13% Similarity=0.133 Sum_probs=58.7
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHH-----HHhhhhhhhhhHHHHHHHHHHHhhhhhc
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTI-----IFGLAYWLSVHLLVYFVGVQIFCGLFQS 160 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~-----~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 160 (497)
..|.+.+.+.|...+.+|+...-++.|.--.-+.+..-+++..++.+ -..|+ +...++-+.+.+.-++.|.-.|
T Consensus 42 Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA-~~~~~~~~Vly~lt~vIG~LVG 120 (508)
T COG4262 42 ILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFA-LESAPSRLVLYALTAVIGVLVG 120 (508)
T ss_pred eeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHH-hccchHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999888864433222222222222111 11222 1223578889999999999999
Q ss_pred ccchhhhhhhhc
Q 010904 161 IGWPCVVAVLGN 172 (497)
Q Consensus 161 ~~~~~~~~~i~~ 172 (497)
...|....++..
T Consensus 121 ~EiPL~mrml~~ 132 (508)
T COG4262 121 AEIPLLMRMLQR 132 (508)
T ss_pred cchHHHHHHHHH
Confidence 999998888766
|
|
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.033 Score=48.74 Aligned_cols=64 Identities=9% Similarity=0.203 Sum_probs=41.9
Q ss_pred hhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhh
Q 010904 277 IGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGI 344 (497)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 344 (497)
.+|..-+++-.+..+.+.+.+.-........+++.|..+. ..++...-.++-.+..++....+.
T Consensus 192 m~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfvidd----lqm~qsakAllP~v~Yl~SF~VS~ 255 (412)
T KOG4830|consen 192 MHWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDD----LQMEQSAKALLPMVAYLSSFSVSM 255 (412)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeeh----hhHHHHHhhhhHHHHHHhhhhHHh
Confidence 3455566666677777777777777767777888887776 566666666665555555544333
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.089 Score=46.53 Aligned_cols=148 Identities=11% Similarity=0.029 Sum_probs=81.5
Q ss_pred cCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcc
Q 010904 321 VHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPY 400 (497)
Q Consensus 321 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 400 (497)
||+...+.|.++.......++...+.|-+.||.|||+..+..++...++++ ....+.+-.+.+.-.+.|+.....+
T Consensus 67 YgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi----TKhSpqYkVLmVGR~LGGiaTsLLF 142 (454)
T KOG4332|consen 67 YGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI----TKHSPQYKVLMVGRVLGGIATSLLF 142 (454)
T ss_pred cCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH----hhcCCceEEEeehhhhhhHHHHHHH
Confidence 788888999887776666677777889999999999876555444444332 2223444455555566666665555
Q ss_pred hhHHHHHHhhcccccccccccchhHHHHHHHh-hhhhhhhhhhhcccceeecc---CchHHHHHHHHHHHHHHHHHHH
Q 010904 401 SLITTAVAADLGTQDLIKGNSRALATVTAIID-GTGSVGAALGPLLAGYISTR---GWNSVFFMLIVSILFAGMFLIR 474 (497)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~~~~~~~g~l~~~---g~~~~~~~~~~~~~~~~~~~~~ 474 (497)
+..-++...+-.+.+.++.+ ......+=.. ..+.+-.+++......+.|. |.-.+|-..+....++..+.+.
T Consensus 143 SaFEsWliaEHnekr~Feqq--Wls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~ 218 (454)
T KOG4332|consen 143 SAFESWLIAEHNEKRGFEQQ--WLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILS 218 (454)
T ss_pred HHHHHHHHHHhhhccCChHh--hhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHh
Confidence 55544443322211112211 1111111111 12233333444444444444 6777777777777666665543
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.57 E-value=1.6 Score=40.91 Aligned_cols=124 Identities=10% Similarity=0.006 Sum_probs=64.8
Q ss_pred HHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhh----hhh---hhHHHHHHHHHHHhhh----hhcccchhhh
Q 010904 99 SYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAY----WLS---VHLLVYFVGVQIFCGL----FQSIGWPCVV 167 (497)
Q Consensus 99 ~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~~---~~~~~~l~~~r~l~G~----~~~~~~~~~~ 167 (497)
...+...+.|...|+..|+|++...+.+.-++.++++-.. .+. ..++.++..+-++.-. +.=.......
T Consensus 75 s~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i 154 (503)
T KOG2601|consen 75 SQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTI 154 (503)
T ss_pred HHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheE
Confidence 3456667788899999999998877766544443333210 000 1234444444433322 2111111222
Q ss_pred hhhhccc----Ccccch---hhHHHHHHHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHH
Q 010904 168 AVLGNWF----GKAKRG---LIMGVWNSHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIF 222 (497)
Q Consensus 168 ~~i~~~~----~~~~r~---~~~~~~~~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~ 222 (497)
..-.||. ..+.+. ++.+..-..-..-.++.|++.|.+.. .+-|..-...++-..+
T Consensus 155 ~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 155 LIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred EecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence 2234554 223333 33455555666677888888888774 3556544444444444
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.88 E-value=14 Score=36.43 Aligned_cols=122 Identities=10% Similarity=0.017 Sum_probs=68.5
Q ss_pred CcchhhHHHhhhhh-hhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhcc--------C-----------c---
Q 010904 324 SHKTAGILSTIFDI-GGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYG--------S-----------I--- 380 (497)
Q Consensus 324 s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-----------~--- 380 (497)
+++...++-...-+ ++++..++..++.+++.+++.............+++.+... . +
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 34555555444444 55667778888999998888876555444444444332111 0 0
Q ss_pred -------hhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc
Q 010904 381 -------SMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR 452 (497)
Q Consensus 381 -------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 452 (497)
+.|.......+.-+-.....+.+....+++..+ .++..+-.++.+...+++..++..+..++.++
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt-------~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITT-------IEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 112222222222222222233233333333333 24557889999999999999999998888775
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=88.31 E-value=30 Score=34.69 Aligned_cols=141 Identities=18% Similarity=0.268 Sum_probs=75.6
Q ss_pred CCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhh--h----------h-HH---HHHHHHHHHHHHHHHhh-c----cC-
Q 010904 322 HLSHKTAGILSTIFDIGGVFGGILAGLISDMIEA--R----------A-VT---SVAFLLLSIPALVLYRT-Y----GS- 379 (497)
Q Consensus 322 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~--~----------~-~~---~~~~~~~~~~~~~~~~~-~----~~- 379 (497)
-.+..|+.-.+...++++-++.+++|.+...+.+ | . .+ .....+.++....+... . ..
T Consensus 172 itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~ 251 (491)
T PF03219_consen 172 ITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDP 251 (491)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 3778888888888888888888888887776655 0 0 11 11111111111111110 0 00
Q ss_pred --------------------------ch--hHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHH
Q 010904 380 --------------------------IS--MITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAII 431 (497)
Q Consensus 380 --------------------------~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 431 (497)
.+ ...+.+..+..|+..+..-...-..+.+.+|++ +++...+|-.
T Consensus 252 ~~~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~-------~~ysafmG~~ 324 (491)
T PF03219_consen 252 RFYPSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDP-------NDYSAFMGKF 324 (491)
T ss_pred ccchhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-------hHHHHHHHHH
Confidence 00 112333444556665555555555566666653 4445556666
Q ss_pred hhhhhhhhhhhhcccceeecc-CchHHHHHHHHHHHHHH
Q 010904 432 DGTGSVGAALGPLLAGYISTR-GWNSVFFMLIVSILFAG 469 (497)
Q Consensus 432 ~~~~~~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~ 469 (497)
+...++...+...+.+.+.++ ||..+..+.-++.++..
T Consensus 325 ~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~ 363 (491)
T PF03219_consen 325 SSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG 363 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence 555555555555566666666 88877666555554444
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=82.58 E-value=0.43 Score=44.62 Aligned_cols=112 Identities=20% Similarity=0.093 Sum_probs=3.7
Q ss_pred hhHHHHHHHHHHHHhhcccccccc-CCchhhHHHHHHHHHHHHHHhhhhhh--------hhhHHHHHHHHHHHhhhhhcc
Q 010904 91 ELDLAFLTSYSVGMYFAGHVGDTI-DLRLFLVFGMMGSGLFTIIFGLAYWL--------SVHLLVYFVGVQIFCGLFQSI 161 (497)
Q Consensus 91 ~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~~--------~~~~~~~l~~~r~l~G~~~~~ 161 (497)
.....|.++-.+|....++.--+- .+|++ .+..+.-.+.--++.++... ..+|-+..++..++.|+..|-
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l-~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWL-WILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccH-HHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence 356678888888888777632111 23433 33333332222222222000 124667788889999999999
Q ss_pred cchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhh
Q 010904 162 GWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASG 203 (497)
Q Consensus 162 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~ 203 (497)
....+..+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp --HHHH------------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888888898888877644
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.52 E-value=53 Score=31.74 Aligned_cols=29 Identities=14% Similarity=-0.008 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010904 288 VAPFAFCLFFSKLVAYTFLYWLPFYIRHT 316 (497)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (497)
++..++...........+.+-.+.|.++.
T Consensus 20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~ 48 (406)
T KOG1479|consen 20 YLIFLLLGIGTLLPWNMFITASDYYYYRF 48 (406)
T ss_pred HHHHHHHhcccccchHhhhccHHHHHhhc
Confidence 34444555555556666666666666654
|
|
| >PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter | Back alignment and domain information |
|---|
Probab=80.02 E-value=30 Score=35.12 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=31.1
Q ss_pred hHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhh
Q 010904 278 GFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMI 353 (497)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 353 (497)
.-.+++|.|.-..+ ++.+................+... .-+++..-|.+.....+..++++.++|+.+.|+
T Consensus 250 vhgDVFR~P~~~~l-ls~lvG~G~Qll~~~~~~~~~a~~----g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~ 320 (521)
T PF02990_consen 250 VHGDVFRPPKHPML-LSALVGTGIQLLFMALVTLFFAAL----GFLSPNNRGSLLTAAIILYALTSFIAGYVSARL 320 (521)
T ss_pred hhHHHhcCcCCchH-HHhHhcchhhhhHHHHHHHHHHHh----hhccccCcchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34577887764322 222222222222223233333332 124455455555444444455555555555554
|
Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 497 | ||||
| 1pw4_A | 451 | Crystal Structure Of The Glycerol-3-Phosphate Trans | 6e-12 |
| >pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter From E.Coli Length = 451 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 302 bits (775), Expect = 5e-98
Identities = 98/477 (20%), Positives = 177/477 (37%), Gaps = 48/477 (10%)
Query: 13 APGLNLFPTLKPPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRS 72
AP P + T + + FF YA+++ RK ++ L
Sbjct: 7 APHKARLPAAEID-PTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV---------- 55
Query: 73 NDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTI 132
+ G++ LG +Y + G V D + R+FL G++ + +
Sbjct: 56 -EQGFSR-------GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML 107
Query: 133 IFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSI 192
G W + + + CG FQ +GWP + +W+ + +RG I+ VWN ++
Sbjct: 108 FMGFVPWAT-SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV 166
Query: 193 GNIIGSVLASGVLEF--GWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELM 250
G I +L + + W + +P F I V +F F + P+ G
Sbjct: 167 GGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL---------- 216
Query: 251 NVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLP 310
K + + ++ + + I + A F L+ Y L W P
Sbjct: 217 PPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSP 276
Query: 311 FYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMI--EARAVTSVAFLLLSI 368
Y++ H + + +++ G+ G +L G +SD + R T V F+ L
Sbjct: 277 TYLKEVK----HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 332
Query: 369 PALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVT 428
A ++Y + + ++ M + G L+ GP LI G L +A T
Sbjct: 333 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLI--------GLHALELAPKKAAGTAA 384
Query: 429 AIIDGTGSVGAAL-GPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRIVKAEIREK 483
G +G ++ + GY GW+ F ++I + A + LI ++ E R
Sbjct: 385 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRH 441
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-05
Identities = 52/392 (13%), Positives = 116/392 (29%), Gaps = 46/392 (11%)
Query: 102 VGMYFAGHVGDTIDLR---LFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLF 158
+ G + D + LR L+++ GM+ IF L ++LV + I+ G
Sbjct: 58 LFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117
Query: 159 QSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSFVLPGF 218
+ G P V A + ++ G +G +G+ + + + F L
Sbjct: 118 FNAGAPAVEAFIEKVSRRSNFE--FGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSG 175
Query: 219 LVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIG 278
+ + V +F P + V + +
Sbjct: 176 CALILAVLLFFAKTDAPS-----------------------SATVANAVGANHSAFSLKL 212
Query: 279 FLEAWKLPRVAPFAFCLFFSKL---VAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIF 335
LE ++ P++ + + V F+ A + G ++T+
Sbjct: 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFA--NFFTSFFATGE--QGTRVFGYVTTM- 267
Query: 336 DIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLL 395
G + +I R + LLL+ + + S T+ + + L
Sbjct: 268 ---GELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVR--IIGSSFATSALEVVILKTL 321
Query: 396 VNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-GW 454
+ + +Q ++ ++ + +LAG + G+
Sbjct: 322 HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQ---LAMIFMSVLAGNMYESIGF 378
Query: 455 NSVFFMLIVSILFAGMFLIRIVKAEIREKLNE 486
+ +L + L + + + L
Sbjct: 379 QGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 5e-04
Identities = 72/455 (15%), Positives = 128/455 (28%), Gaps = 148/455 (32%)
Query: 3 QPQDQETVSLAPGLNLFPTL--KPPNKTLIFHQITALVITF-FAYASFHASRKPPSIVKS 59
LF TL K F + L I + F + ++ PS++
Sbjct: 57 SKDAVSGTLR-----LFWTLLSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 60 VLGPTFDGSNLRSNDPGWAPFNGPDGTHR---LGELDLAFLTSYSVGMYFAGHVGDTIDL 116
+ D L +++ +A +N R +L A L
Sbjct: 111 MYIEQRD--RLYNDNQVFAKYNVS----RLQPYLKLRQA-LLELRPAKNV---------- 153
Query: 117 RLFLVFGMMGSG---L-------FTII----FGLAYWLSV-------------HLLVYFV 149
L+ G++GSG + + + F + +WL++ L+Y
Sbjct: 154 ---LIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLY-- 207
Query: 150 GVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGW 209
QI + + + R L+ + + +L VL
Sbjct: 208 --QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK--SKPYEN------CLL---VLLNVQ 254
Query: 210 GWSFVLPGF------LVI--FVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENE 261
F L+ F V FL + L + +E
Sbjct: 255 NAK-AWNAFNLSCKILLTTRFKQVTDFLSAATT----------THISLDHHSMT-LTPDE 302
Query: 262 EVGLLESGSSGSLQAIGFLEAWKLPRVA----PFAFCLFFSKLVAY--TFLYWLPFYIRH 315
LL L+ + LPR P + + T+ W
Sbjct: 303 VKSLL-------LKYLD-CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK------ 348
Query: 316 TAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLS-------I 368
H++ L+TI + L L E R + F LS I
Sbjct: 349 ------HVNCDK---LTTIIES------SLNVLEPA--EYRKM----FDRLSVFPPSAHI 387
Query: 369 PALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLI 403
P ++L + +I + ++ ++ L YSL+
Sbjct: 388 PTILLSLIWF--DVIKSDVMVVVNKLHK---YSLV 417
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 497 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.98 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.52 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.51 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.5 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.46 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.39 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.35 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.19 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=342.08 Aligned_cols=406 Identities=22% Similarity=0.384 Sum_probs=331.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcc
Q 010904 29 LIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAG 108 (497)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (497)
.++.++..+..++++.+..+++...+++..|.+.+++ ++ ..+.|++.+++.++..++++++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~s-------~~~~g~~~~~~~~~~~~~~~~~G 83 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-----------FS-------RGDLGFALSGISIAYGFSKFIMG 83 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-----------TC-------SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cc-------HhHHHHHHHHHHHHHHHHHHhHH
Confidence 4566778888888899999999889999999888841 33 88999999999999999999999
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHhh----hhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHH
Q 010904 109 HVGDTIDLRLFLVFGMMGSGLFTIIFGL----AYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMG 184 (497)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~----~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 184 (497)
+++||+|||++++++.++.+++.+++++ + ++++.++++|+++|++.+...+...+++.|++|+++|+++++
T Consensus 84 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 158 (451)
T 1pw4_A 84 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-----SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVS 158 (451)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH-----SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc-----ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHH
Confidence 9999999999999999999999999999 8 899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHhhhHh-hcC-cceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCcccccc
Q 010904 185 VWNSHTSIGNIIGSVLASGVL-EFG-WGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEE 262 (497)
Q Consensus 185 ~~~~~~~~G~~~g~~~~~~l~-~~g-wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (497)
+...+.++|.++||.+++.+. ..| ||+.|++.+++.++..++.++++||+|++....+.++.. ++. +.+.
T Consensus 159 ~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~ 230 (451)
T 1pw4_A 159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK-------NDY-PDDY 230 (451)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC-------CC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc-------ccc-cccc
Confidence 999999999999999999877 578 999999999998888777888888887654332221110 000 0000
Q ss_pred ccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhh
Q 010904 263 VGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFG 342 (497)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~ 342 (497)
++ +.+++....+...++.+++|.++...+..++.....+....++|.|+++. +|+++.+.+.+.+...++.+++
T Consensus 231 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~ 304 (451)
T 1pw4_A 231 NE--KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV----KHFALDKSSWAYFLYEYAGIPG 304 (451)
T ss_dssp ----------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB----SCCCHHHHHHHHHHHHHHHHHH
T ss_pred hh--hhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHH
Confidence 00 00011111222357788999999999999999999999999999999997 7999999999999999999999
Q ss_pred hhhhHHhHHhh--hhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccc
Q 010904 343 GILAGLISDMI--EARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGN 420 (497)
Q Consensus 343 ~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (497)
.++.+++.||+ ++|+.+..+..+......++....+..+.+......++.|++.+...+.......+.+|+
T Consensus 305 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------- 377 (451)
T 1pw4_A 305 TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK------- 377 (451)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-------
Confidence 99999999999 999888777766663333333323233566667777888888888888888888888886
Q ss_pred cchhHHHHHHHhhhhhh-hhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHHHhhh
Q 010904 421 SRALATVTAIIDGTGSV-GAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRIVKAE 479 (497)
Q Consensus 421 ~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (497)
+.+|++.|+.+...++ |..++|.+.|++.+. +++..|++.+++.+++.++.+...+++
T Consensus 378 -~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (451)
T 1pw4_A 378 -KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 437 (451)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4459999999999999 999999999999998 999999999888888877766654433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-40 Score=322.71 Aligned_cols=368 Identities=11% Similarity=0.077 Sum_probs=302.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccc
Q 010904 33 QITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGD 112 (497)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d 112 (497)
++..+..+++.++..+++....++..|.+.+++ |++ ..+.|++.+.+.+++.++++++|+++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~s-------~~~~g~~~~~~~~~~~i~~~~~G~l~d 86 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAF----------TLT-------NFQAGLIQSAFYFGYFIIPIPAGILMK 86 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----------CCC-------SHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc----------CCC-------HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344555666666777777677888899999999 888 999999999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHH
Q 010904 113 TIDLRLFLVFGMMGSGLFTIIF---GLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSH 189 (497)
Q Consensus 113 r~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 189 (497)
|+|||++++++.++.+++.+++ +++ ++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+
T Consensus 87 r~g~r~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 161 (438)
T 3o7q_A 87 KLSYKAGIITGLFLYALGAALFWPAAEI-----MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTF 161 (438)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHHHHHhcccc-----ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHH
Confidence 9999999999999999999999 777 99999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhHh-hcC--------------------------cceeeehhhHHHHHHHHHHHhh-eecCCcCCCCC
Q 010904 190 TSIGNIIGSVLASGVL-EFG--------------------------WGWSFVLPGFLVIFVGVFVFLF-LVVRPEDLGFE 241 (497)
Q Consensus 190 ~~~G~~~g~~~~~~l~-~~g--------------------------wr~~f~~~~~~~~~~~~~~~~~-~~~~p~~~~~~ 241 (497)
.++|.+++|.+++.+. +.+ ||+.|++.+++.++..++.++. .||++++.+
T Consensus 162 ~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-- 239 (438)
T 3o7q_A 162 NSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH-- 239 (438)
T ss_dssp HHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCC--
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccc--
Confidence 9999999999999987 432 9999988887777665544332 222222110
Q ss_pred CChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcc
Q 010904 242 LPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFY-IRHTAVAG 320 (497)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 320 (497)
++ +++.+.+..+++++++|.++...+..++..........++|.| +++.
T Consensus 240 -~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 289 (438)
T 3o7q_A 240 -SD-------------------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI---- 289 (438)
T ss_dssp -CC-------------------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred -cc-------------------------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----
Confidence 00 0122244567889999999999999999888888999999999 8887
Q ss_pred cCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcc
Q 010904 321 VHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPY 400 (497)
Q Consensus 321 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 400 (497)
+|+++.+++.+.....++.+++.++.++++||+++|+.+..+..+..+..+++... .+. .....+++.|++.+..+
T Consensus 290 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~g~~~~~~~ 365 (438)
T 3o7q_A 290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---GGH-VGLIALTLCSAFMSIQY 365 (438)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---CHH-HHHHHHHHHHHHHTTHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc---CCc-HHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999988887777766655542 233 33445577888888888
Q ss_pred hhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-C-chHHHHHHHHHHHHH
Q 010904 401 SLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-G-WNSVFFMLIVSILFA 468 (497)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g-~~~~~~~~~~~~~~~ 468 (497)
+.......+.+|++ ++++.++.. ...+++.++|.+.|++.|. | ++..|.+.+++.++.
T Consensus 366 ~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 366 PTIFSLGIKNLGQD---------TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHSSCGGG---------HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHhhcccc---------ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 88888888888753 366777666 6779999999999999998 7 998888765554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=318.75 Aligned_cols=433 Identities=12% Similarity=0.054 Sum_probs=302.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCC-CCCCCCCccchhhHHHHHHHHHHHHhhcc
Q 010904 30 IFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAP-FNGPDGTHRLGELDLAFLTSYSVGMYFAG 108 (497)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (497)
+++.+.+.+++.++.+..++|...++..+|.+.+++ +.++ .+.+.+..+.|++.+++.+|..++++++|
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G 76 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVF----------VAPQNLSESAANSLLGFCVASALIGCIIGGALGG 76 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHH----------TGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777778888888899888888888888766 2110 01011156679999999999999999999
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHhhhhh-------------hhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccC
Q 010904 109 HVGDTIDLRLFLVFGMMGSGLFTIIFGLAYW-------------LSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFG 175 (497)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 175 (497)
+++||+|||++++++.+++.+++++++++.. ...+|++.++++|+++|++.|...+....+++|+.|
T Consensus 77 ~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p 156 (491)
T 4gc0_A 77 YCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAP 156 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999984210 012899999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHhhhHHHHHHHHhhhHhh---------cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhh
Q 010904 176 KAKRGLIMGVWNSHTSIGNIIGSVLASGVLE---------FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKE 246 (497)
Q Consensus 176 ~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---------~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 246 (497)
+++|++..++.+.+..+|.++++.++..+.. .+||+.+.+..+..++. ++..+++||+|++...+.+.++
T Consensus 157 ~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peSp~~L~~~~~~~~ 235 (491)
T 4gc0_A 157 AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LMLLYTVPESPRWLMSRGKQEQ 235 (491)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCCHHHHHHTTCHHH
T ss_pred HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hhhhhcCCCChHHHHHcCchhH
Confidence 9999999999999999999999988877652 35888888877776665 5667789999998766655555
Q ss_pred hhhhhh-ccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcccCCC
Q 010904 247 VELMNV-ENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKL-VAYTFLYWLPFYIRHTAVAGVHLS 324 (497)
Q Consensus 247 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~s 324 (497)
++...+ ...++...+.....+......++.......++.++.........+... ....+..+.|.+.++ .+.+
T Consensus 236 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 310 (491)
T 4gc0_A 236 AEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-----LGAS 310 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----SSCC
T ss_pred HHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-----cCCC
Confidence 422111 111111000000000000111122222334444444444433333333 344555666666666 5788
Q ss_pred cchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhc-cCchhHHHHHHHHHHh-hhccCcchh
Q 010904 325 HKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTY-GSISMITNIPLMFLSG-LLVNGPYSL 402 (497)
Q Consensus 325 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g-~~~~~~~~~ 402 (497)
...........++..+++.++++++.||+|||+.+..+.....++.+.+.... .....+...+..++.. ....+..+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (491)
T 4gc0_A 311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPV 390 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHH
Confidence 77777888888899999999999999999999999888877777665554321 1222222222222222 222333455
Q ss_pred HHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-------CchHHHHHHHHHHHHHHHHHHHH
Q 010904 403 ITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-------GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-------g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
...+.+|.+|++ .|+++.|+.+..+++++.+++.+.+.+.+. ++...|++++++++++.++.+++
T Consensus 391 ~~~~~~E~fPt~--------~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~ 462 (491)
T 4gc0_A 391 CWVLLSEIFPNA--------IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 462 (491)
T ss_dssp HHHHHHHSSCTT--------THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhe
Confidence 667788888874 449999999999999999999888776553 45567888888888887766655
Q ss_pred HhhhhhhhhhcC
Q 010904 476 VKAEIREKLNEG 487 (497)
Q Consensus 476 ~~~~~~~~~~~~ 487 (497)
. +|+|+|+.||
T Consensus 463 ~-PETkg~tLee 473 (491)
T 4gc0_A 463 V-PETKGKTLEE 473 (491)
T ss_dssp C-CCCTTCCHHH
T ss_pred e-cCCCCCCHHH
Confidence 4 4777776554
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=296.63 Aligned_cols=356 Identities=12% Similarity=0.086 Sum_probs=289.5
Q ss_pred HHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCc
Q 010904 38 VITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLR 117 (497)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr 117 (497)
.++++..+....+...+.+..|.+.+++ |++ ..+.+++.+.+.++..++++++|+++||+|||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~s-------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r 65 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDL----------NVR-------EGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR 65 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS----------SST-------THHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3445555666666666778889999999 888 99999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHH
Q 010904 118 LFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIG 197 (497)
Q Consensus 118 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g 197 (497)
+++..+.++.+++.++.+++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 140 (375)
T 2gfp_A 66 PVILVGMSIFMLATLVAVTT-----SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLA 140 (375)
T ss_dssp CCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhh
Q 010904 198 SVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQA 276 (497)
Q Consensus 198 ~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (497)
|.+++.+. ..|||+.|++.+++.++..+...+.+||++++.+.++ +..
T Consensus 141 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~ 189 (375)
T 2gfp_A 141 PLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT-------------------------------RLL 189 (375)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC-------------------------------CTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc-------------------------------cHH
Confidence 99999988 4699999999988887776656667777654321110 011
Q ss_pred hhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhh
Q 010904 277 IGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEAR 356 (497)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 356 (497)
..+++.+|+|.++...+..++..........+.|.|+++. +|.++.+.+.......++.+++.++.+++.||++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 265 (375)
T 2gfp_A 190 TSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV----LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 265 (375)
T ss_dssp TCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH----HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345778889999998888888888889999999999987 789999999999999999999999999999999873
Q ss_pred hHHHHHHHH-HHHHHHHHHh-hccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhh
Q 010904 357 AVTSVAFLL-LSIPALVLYR-TYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGT 434 (497)
Q Consensus 357 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 434 (497)
. ..+... ...+...+.. .....+.+......++.|++.+...+.......+..| ++ +|++.|+.+..
T Consensus 266 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~--------~g~~~g~~~~~ 334 (375)
T 2gfp_A 266 M--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL--------AGTAGALVGGL 334 (375)
T ss_dssp H--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH--------HHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc--------cchHHHHHHHH
Confidence 2 222222 1111111111 1111244555566777888888888888888888876 33 39999999999
Q ss_pred hhhhhhhhhcccceeecc-CchHHHHHH
Q 010904 435 GSVGAALGPLLAGYISTR-GWNSVFFML 461 (497)
Q Consensus 435 ~~~g~~~~~~~~g~l~~~-g~~~~~~~~ 461 (497)
.++|..++|.+.|.+.+. ++...+.+.
T Consensus 335 ~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 335 QNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 999999999999999877 666666554
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=295.03 Aligned_cols=378 Identities=13% Similarity=0.057 Sum_probs=271.9
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccc-cCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 010904 76 GWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDT-IDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIF 154 (497)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l 154 (497)
|++ ..+.|++.+.+.++..++++++|+++|| +|||+++..+.++.+++.++++++ +|++.++++|++
T Consensus 50 ~~s-------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l 117 (491)
T 4aps_A 50 HIT-------RATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-----FGASALFGSIIL 117 (491)
T ss_dssp CSC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-----CSTTHHHHHHHH
T ss_pred CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHH
Confidence 787 9999999999999999999999999999 899999999999999999999998 999999999999
Q ss_pred hhhhhcccchhhhhhhhcccCccc--chhhHHHHHHHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhhe
Q 010904 155 CGLFQSIGWPCVVAVLGNWFGKAK--RGLIMGVWNSHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFL 231 (497)
Q Consensus 155 ~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~ 231 (497)
+|++.+...+...++++|++|+++ |+.++++++.+.++|..++|.+++.+.+ .|||+.|++.++..++..++.++..
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 118 IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999988 7788888999999999999999999984 8999999998877766655544443
Q ss_pred ecCCcCCCCCC----Chhhhhhhhh-----------------ccCCccccccccccc----------cCCCCchhhhhHH
Q 010904 232 VVRPEDLGFEL----PGKEVELMNV-----------------ENGDKVENEEVGLLE----------SGSSGSLQAIGFL 280 (497)
Q Consensus 232 ~~~p~~~~~~~----~~~~~~~~~~-----------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 280 (497)
++..++....+ +.++.+...+ ..++...++...... .....+..+....
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (491)
T 4aps_A 198 KKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTST 277 (491)
T ss_dssp HTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred cccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHH
Confidence 43222111111 1111100000 000000000000000 0000000000111
Q ss_pred HHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHH
Q 010904 281 EAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTS 360 (497)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~ 360 (497)
+..+....+...+..++..........++|.|.++. .+.+....+.......++.+++.++.+++.||++||+...
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~ 353 (491)
T 4aps_A 278 EHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER----VDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS 353 (491)
T ss_dssp ----CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS----CCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH----hccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc
Confidence 122223345555555555666666778889999987 7788788899999999999999999999999999886543
Q ss_pred -----HHHHHHHHHHHHHHhhc------cCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHH
Q 010904 361 -----VAFLLLSIPALVLYRTY------GSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTA 429 (497)
Q Consensus 361 -----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 429 (497)
.+..+.+++.+++.... ...+.+...+..++.|++.+...+.......+.+|++.| |++.|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~--------g~~~g 425 (491)
T 4aps_A 354 PTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFN--------SQMMS 425 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCS--------SSSTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH--------HHHHH
Confidence 45555555444433311 123556666777888888888888889999999987543 89999
Q ss_pred HHhhhhhhhhhhhhcccceeeccCchHHHHHHHHHHHHHHHHHHHHHh
Q 010904 430 IIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 430 ~~~~~~~~g~~~~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
+.+...++|..++|.+.+.+.+.++...|...+++.+++.++.+...+
T Consensus 426 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 426 MWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888888888888888777766665543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-32 Score=266.91 Aligned_cols=360 Identities=13% Similarity=0.103 Sum_probs=248.8
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHH---
Q 010904 56 IVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTI--- 132 (497)
Q Consensus 56 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~--- 132 (497)
....++.+++ |++ ..+.|++.+.+.+++.++++++|+++||+|||++++++..+++++..
T Consensus 29 ~~~~~l~~~~----------g~s-------~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~ 91 (417)
T 2cfq_A 29 FFPIWLHDIN----------HIS-------KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF 91 (417)
T ss_dssp THHHHHHTTT----------CCC-------TTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHh----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3334466777 787 89999999999999999999999999999999999999887765332
Q ss_pred HHhhhhhhhhhHH-HHHHHHHHHhhhhhcccchhhhhhhhcccCc--ccchhhHHHHHHHhhhHHHHHHHHhhhHhhcCc
Q 010904 133 IFGLAYWLSVHLL-VYFVGVQIFCGLFQSIGWPCVVAVLGNWFGK--AKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGW 209 (497)
Q Consensus 133 ~~~~~~~~~~~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~gw 209 (497)
...++ +.. ..++..+++.|++.+..++.....+.++.++ ++|+...+.......+|..++|.+++.+.+.+|
T Consensus 92 ~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 166 (417)
T 2cfq_A 92 IFIFG-----PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINN 166 (417)
T ss_dssp HHTHH-----HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCS
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 22332 222 1245566777766665555555555555543 456777888888899999999999999988899
Q ss_pred ceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchH
Q 010904 210 GWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVA 289 (497)
Q Consensus 210 r~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (497)
|+.|++.+++.++..+. .+..+|++++... +++. ++ . ++++.....+++++++|.++
T Consensus 167 ~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~--------~~--~---------~~~~~~~~~~~~~~~~~~~~ 223 (417)
T 2cfq_A 167 QFVFWLGSGCALILAVL-LFFAKTDAPSSAT---VANA--------VG--A---------NHSAFSLKLALELFRQPKLW 223 (417)
T ss_dssp HHHHTTTTTTTTTHHHH-SCSSCCCCSCSSC---SSSS--------SS--S---------CCCCCCHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHH-HHHcCcccccccc---cccc--------cc--c---------ccccccHHHHHHHhcCCchh
Confidence 99999888775554333 3333332211100 0000 00 0 00111223466788999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHH
Q 010904 290 PFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVH---LSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLL 366 (497)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 366 (497)
...+..++....+..+..++|.|+.+. ++ .+....+.......++.+++.++.++++||++||+.+..+..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 224 FLSLYVIGVSCTYDVFDQQFANFFTSF----FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT----SSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 877766665556666667789998775 33 23445577778888888999999999999999999888777766
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHH-Hhhhhhhhhhhhhcc
Q 010904 367 SIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAI-IDGTGSVGAALGPLL 445 (497)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~~~~~ 445 (497)
++..+.+.. ..+.+...+..++.+++.+...+....+..+..|+ +.+|++.++ ++....+|+.++|.+
T Consensus 300 ~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~--------~~~g~~~g~~~~~~~~lg~~~gp~l 368 (417)
T 2cfq_A 300 SVRIIGSSF---ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV--------RFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp HHHHHHHTT---CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH--------HHHHHHHHHHHTTTHHHHHHHHTHH
T ss_pred HHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH--------HHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 665444432 23344444444455555444445556777788776 445999998 488889999999999
Q ss_pred cceeecc-CchHHHHHHHHHHHHHHHHHHHH
Q 010904 446 AGYISTR-GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 446 ~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
.|++.+. ++...|.+.+++.+++.++.+..
T Consensus 369 ~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 369 AGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 9999887 88888888888877776655443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=254.45 Aligned_cols=372 Identities=10% Similarity=0.023 Sum_probs=229.3
Q ss_pred CccchhhHHHHHHHHHHHHhhcccccccc-CCchhhHHHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHHHhhhhhcccc
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTI-DLRLFLVFGMMGSGLFTIIFGLAYWLSVH-LLVYFVGVQIFCGLFQSIGW 163 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~ 163 (497)
..+.|++.+.+.++..++++++|+++||+ |||+++.++.++.+++.++++++ + +++.+++.|++.|++.+...
T Consensus 53 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~ 127 (524)
T 2xut_A 53 GAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-----EHSVQGFYTGLFLIALGSGGIK 127 (524)
T ss_dssp TTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-----SSCHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999 99999999999999999999998 8 99999999999999999999
Q ss_pred hhhhhhhhcccCcccchhhHHH---HHHHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhheecCCcCCC
Q 010904 164 PCVVAVLGNWFGKAKRGLIMGV---WNSHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLG 239 (497)
Q Consensus 164 ~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~ 239 (497)
+...+++.|++|+++|+++.+. +....++|..+||.+++.+.+ .|||+.|++.+++.++..++.++..++.++...
T Consensus 128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (524)
T 2xut_A 128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP 207 (524)
T ss_dssp HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-
T ss_pred hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 9999999999999999877666 899999999999999999884 799999999888876654443332222211111
Q ss_pred CCCChhhh-hhhh-hccCCccccccccc-------------cccCCC---------------CchhhhhHHHH-------
Q 010904 240 FELPGKEV-ELMN-VENGDKVENEEVGL-------------LESGSS---------------GSLQAIGFLEA------- 282 (497)
Q Consensus 240 ~~~~~~~~-~~~~-~~~~~~~~~~~~~~-------------~~~~~~---------------~~~~~~~~~~~------- 282 (497)
......+. +... ..++...+.+.... ...... +.+.+.++++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (524)
T 2xut_A 208 EPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSH 287 (524)
T ss_dssp -------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSC
T ss_pred CCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccc
Confidence 00000000 0000 00000000000000 000000 00000011000
Q ss_pred -----hhCCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhcccCCCc-chhhHHHhhhhhhhhhhhhhhHHhH--
Q 010904 283 -----WKLPRVAPFAFCLFFSKLVAYT----FLYWLPFYIRHTAVAGVHLSH-KTAGILSTIFDIGGVFGGILAGLIS-- 350 (497)
Q Consensus 283 -----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~-- 350 (497)
.+.++.+........ ....+. ....++.+..+ .+.+. ...+.+.....++.+++.++.+++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (524)
T 2xut_A 288 PDAAVDGVRSVLRILVLFAL-VTPFWSLFDQKASTWILQAND-----MVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYP 361 (524)
T ss_dssp CSSSSTTTTTHHHHHHHHTT-SHHHHTTTSSTTTHHHHHHHH-----SCCCSSSCHHHHHTTSGGGHHHHGGGTTTC---
T ss_pred cHhHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhhHHhHHh-----cCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHH
Confidence 111222222111111 111111 11223333332 12221 2456666666667777777766654
Q ss_pred --Hhhhh----hhHHHHHHHHHHHHHHHHHhhc------cCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccc
Q 010904 351 --DMIEA----RAVTSVAFLLLSIPALVLYRTY------GSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIK 418 (497)
Q Consensus 351 --dr~~~----~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (497)
||.++ ++.+..+..+.+++.+++.... ...+.+...+..++.|++.+...+.......+..|++.|
T Consensus 362 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~-- 439 (524)
T 2xut_A 362 AIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK-- 439 (524)
T ss_dssp ---------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCC--
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH--
Confidence 44433 2344555555555554443321 123455666777888888888888888888898887543
Q ss_pred cccchhHHHHHHHhhhhhhhhhhhhcccceeecc---Cc---------hHHHHHHHHHHHHHHHHHHHHH
Q 010904 419 GNSRALATVTAIIDGTGSVGAALGPLLAGYISTR---GW---------NSVFFMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 419 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---g~---------~~~~~~~~~~~~~~~~~~~~~~ 476 (497)
|+++|+.+...++|+.++|.+.|.+.+. +| ...|++.+++.+++.++.+...
T Consensus 440 ------g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (524)
T 2xut_A 440 ------GTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYA 503 (524)
T ss_dssp ------TTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998874 22 2236666666666665554443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=134.97 Aligned_cols=172 Identities=12% Similarity=0.152 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHH
Q 010904 290 PFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIP 369 (497)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 369 (497)
...+..++............|.+.++ +|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+.+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 104 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQFQQA-----FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH
Confidence 33444555555555666677776665 7999999999999999999999999999999999999999999998888
Q ss_pred HHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhccccee
Q 010904 370 ALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYI 449 (497)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 449 (497)
.++........+.+..++..++.|++.+...+....++.+.+|+++ ++.+.++.+....+|..++|.+.+.+
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--------r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS--------GHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT--------HHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776332224677888888899999999999999999999998744 49999999999999999999999998
Q ss_pred e-cc-C-------------------------chHHHHHHHHHHHHHHHHHHH
Q 010904 450 S-TR-G-------------------------WNSVFFMLIVSILFAGMFLIR 474 (497)
Q Consensus 450 ~-~~-g-------------------------~~~~~~~~~~~~~~~~~~~~~ 474 (497)
. +. + |+..|++.+++.++..++...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 177 ILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8 55 3 788887777766665555444
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-13 Score=134.73 Aligned_cols=181 Identities=16% Similarity=0.205 Sum_probs=151.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHh-hhhhhHHHHHH
Q 010904 286 PRVAPFAFCLFFSKLVAYTFLYWLPFYIRHT-AVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDM-IEARAVTSVAF 363 (497)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~ 363 (497)
+.++...+..++..+.++....+++.|+++. ..+++|.+..+.+++.+...++..++.++.|+++|| +|||+.+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3566777777888888888889999999873 112259999999999999999999999999999999 89999999998
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhh
Q 010904 364 LLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGP 443 (497)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 443 (497)
.+..++.++... ..+.+..++..++.|++.+...+.....+.+.+|+++ +.++.+.++.+...++|..++|
T Consensus 93 ~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~ 163 (491)
T 4aps_A 93 VLIMLGHIVLAL---PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD------RRRDAGFSIFVFGINLGAFIAP 163 (491)
T ss_dssp HHHHHHHHHHHS---CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT------THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc------ccceeeehHHHHHHHHHHHHHH
Confidence 888887776654 3566777788888999999999999999999988754 4458899999999999999999
Q ss_pred cccceeecc-CchHHHHHHHHHHHHHHHHHHHH
Q 010904 444 LLAGYISTR-GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 444 ~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
.+.+.+.+. +|+..|++.++..+++.+.....
T Consensus 164 ~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 164 LIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999886 99999999877777766655544
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=7.3e-14 Score=137.32 Aligned_cols=178 Identities=16% Similarity=0.229 Sum_probs=143.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHH
Q 010904 286 PRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLL 365 (497)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 365 (497)
+.++...+..++...........+|.+.++ + .+..+.+++.+...++..++.++.|+++||+|||+.+..+.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-----G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-----T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 344555555555555555566777766665 7 8999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhhcc-CchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhc
Q 010904 366 LSIPALVLYRTYG-SISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPL 444 (497)
Q Consensus 366 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 444 (497)
.+++.++..+... ..+.+.+++..++.|++.+...+...+++.+.+|++ ++++++|+.+....+|..++|.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~--------~r~~~~~~~~~~~~~g~~~g~~ 173 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK--------ERGGIVSVWNCAHNVGGGIPPL 173 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT--------HHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch--------hhhHHHHHHHHHHHHHHHHHHH
Confidence 8888777665111 245667778888999999989999999999999864 4499999999999999999999
Q ss_pred ccceeecc-C-chHHHHHHHHHHHHHHHHHHHHHh
Q 010904 445 LAGYISTR-G-WNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 445 ~~g~l~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
+.+++.+. + |+..|++.+++.++..++.....+
T Consensus 174 ~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 174 LFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp HHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99987776 7 999999988887776665554433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.1e-13 Score=134.03 Aligned_cols=177 Identities=16% Similarity=0.101 Sum_probs=146.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC------CCcchhhHHHhhhhhhhhhhhhhhHHhHHhh-hhhh
Q 010904 285 LPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVH------LSHKTAGILSTIFDIGGVFGGILAGLISDMI-EARA 357 (497)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~ 357 (497)
++.+|...+..++.....+....+++.|+++. +| +++.+.+++.+...++.+++.++.|+++||+ |||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~ 86 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTA----LLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN 86 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS----CSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 35677888888888888889999999999887 78 9999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCc-hhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhh
Q 010904 358 VTSVAFLLLSIPALVLYRTYGSI-SMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGS 436 (497)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 436 (497)
.+..+..+..++.++.... . +.+..++..++.|++.+...+...+.+.+.+|+++| ......+++.+...+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r-----~~~~~~~~~~~~~~~ 158 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIF---EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK-----SLAQKAFDMFYFTIN 158 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHT---SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT-----THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch-----HHHHHHHHHHHHHHH
Confidence 9998888888877766553 3 667777788889999999999999999999987553 112334455888999
Q ss_pred hhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHH
Q 010904 437 VGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLI 473 (497)
Q Consensus 437 ~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 473 (497)
+|..++|.+.+++.+. +|+..|++.+++.+++.+...
T Consensus 159 ~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 159 FGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 999999988877766655443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.3e-13 Score=128.40 Aligned_cols=167 Identities=15% Similarity=0.195 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHH
Q 010904 290 PFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIP 369 (497)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 369 (497)
...+..++...........+|.+.++ +|.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 78 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-----LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-----SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 44555566666666677777877666 6999999999999999999999999999999999999999988888888
Q ss_pred HHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhccccee
Q 010904 370 ALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYI 449 (497)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 449 (497)
.++.... ++.+..++..++.|++.+...+.....+.+..|+++| ++++++.+....+|..++|.+.+++
T Consensus 79 ~~~~~~~---~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~l 147 (375)
T 2gfp_A 79 TLVAVTT---SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQL--------RHANSLLNMGILVSPLLAPLIGGLL 147 (375)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSC--------CSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHh---ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHH--------HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7776653 4677777888889999988888888999998886543 8899999999999999999999999
Q ss_pred ecc-CchHHHHHHHHHHHHHHHHH
Q 010904 450 STR-GWNSVFFMLIVSILFAGMFL 472 (497)
Q Consensus 450 ~~~-g~~~~~~~~~~~~~~~~~~~ 472 (497)
.+. +|+..|++.++..++..+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~ 171 (375)
T 2gfp_A 148 DTMWNWRACYLFLLVLCAGVTFSM 171 (375)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhccHHHHHHHHHHHHHHHHHHH
Confidence 887 99999988877776665533
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-13 Score=131.27 Aligned_cols=147 Identities=15% Similarity=0.048 Sum_probs=123.3
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
....++..+...++..++.++.|++.||+|||+++..+.++.+++.++.++. ++.+.+++..++.+++.+...+.
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~ 332 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-----TSALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-----CSHHHHHHHTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888888889999999999999999999999998888887777776 77888888888888887777777
Q ss_pred hhhhhhcccCcccchhhHHH-HHHHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhheecCCcC
Q 010904 166 VVAVLGNWFGKAKRGLIMGV-WNSHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFLVVRPED 237 (497)
Q Consensus 166 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~ 237 (497)
...++.|.+|++.|+++.++ ++....+|..++|.+++.+.+ .|++..|.+.+++.++..++.++..||+++.
T Consensus 333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 78899999999999999999 488888999999999998884 6888899988888887766666666654443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5.5e-11 Score=118.13 Aligned_cols=152 Identities=15% Similarity=0.165 Sum_probs=113.8
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
............+...++.++.+++.||+|||+.++.+....+++.+..+.......++...++..-+..+.......+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (491)
T 4gc0_A 311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPV 390 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHH
Confidence 55566666777788889999999999999999999999998888877766542222233333322222222222334467
Q ss_pred hhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh-------cCcceeeehhhHHHHHHHHHHHhheecCCcC
Q 010904 166 VVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE-------FGWGWSFVLPGFLVIFVGVFVFLFLVVRPED 237 (497)
Q Consensus 166 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-------~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~ 237 (497)
...+.+|.+|.+.|++++|+......+|..+++.+...+.+ .++.+.|++.++++++..+..++++||+...
T Consensus 391 ~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 391 CWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 78899999999999999999999999999988877665532 4677788999999999888888999987643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 497 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-19 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 5e-05 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 6e-04 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 88.2 bits (217), Expect = 2e-19
Identities = 87/395 (22%), Positives = 153/395 (38%), Gaps = 29/395 (7%)
Query: 95 AFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIF 154
+Y + G V D + R+FL G++ + + G W + + V FV +
Sbjct: 67 GISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV-LLFL 125
Query: 155 CGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSF- 213
CG FQ +GWP + +W+ + +RG I+ VWN ++G I +L + + W
Sbjct: 126 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAA 185
Query: 214 -VLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSG 272
+P F I V +F F + P+ G + + +K E E
Sbjct: 186 LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQE----------L 235
Query: 273 SLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILS 332
+ + I + A F L+ Y L W P Y++ H + +
Sbjct: 236 TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV----KHFALDKSSWAY 291
Query: 333 TIFDIGGVFGGILAGLISDMIEA--RAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMF 390
+++ G+ G +L G +SD + R T V F+ L A ++Y + + ++ M
Sbjct: 292 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI 351
Query: 391 LSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAAL-GPLLAGYI 449
+ G L+ GP LI +A T G +G ++ + GY
Sbjct: 352 VIGFLIYGPVMLIGLHALELAPK--------KAAGTAAGFTGLFGYLGGSVAASAIVGYT 403
Query: 450 STR-GWNSVFFMLIVSILFAGMFLIRIVKAEIREK 483
GW+ F ++I + A + LI ++ E R
Sbjct: 404 VDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRH 438
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 43.1 bits (100), Expect = 5e-05
Identities = 19/145 (13%), Positives = 37/145 (25%)
Query: 92 LDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGV 151
+ + G G + D + G+ L TI + + +
Sbjct: 290 AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 349
Query: 152 QIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGW 211
I G + K G G +G + + G +GW
Sbjct: 350 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 409
Query: 212 SFVLPGFLVIFVGVFVFLFLVVRPE 236
+ + + L +V+ E
Sbjct: 410 DGGFMVMIGGSILAVILLIVVMIGE 434
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 39.8 bits (91), Expect = 6e-04
Identities = 41/385 (10%), Positives = 98/385 (25%), Gaps = 36/385 (9%)
Query: 95 AFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIF 154
A + G + D + LR +L++ + G + F + + + VG +
Sbjct: 51 AISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVG 110
Query: 155 CGLFQSIGWPCVVAVLGNWFGKA-KRGLIMGVWNSHTSIGNIIGSVLASGVLEFGWGWSF 213
AV + + G +G +G+ + + + F
Sbjct: 111 GIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVF 170
Query: 214 VLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGS 273
L + + V +F P S
Sbjct: 171 WLGSGCALILAVLLFFAKTDAPSSATVANAVGANH------------------------S 206
Query: 274 LQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILST 333
++ F Y + A + G ++T
Sbjct: 207 AFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTT 266
Query: 334 IFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSG 393
+ ++ A LI + I + +A ++ ++ + + + S + + L L
Sbjct: 267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIM---SVRIIGSSFATSALEVVILKTLHM 323
Query: 394 LLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR- 452
V + + + + +LAG +
Sbjct: 324 FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFF-------KQLAMIFMSVLAGNMYESI 376
Query: 453 GWNSVFFMLIVSILFAGMFLIRIVK 477
G+ + +L + L + + +
Sbjct: 377 GFQGAYLVLGLVALGFTLISVFTLS 401
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 497 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.45 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.44 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.9e-43 Score=343.66 Aligned_cols=419 Identities=21% Similarity=0.361 Sum_probs=331.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHH
Q 010904 24 PPNKTLIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVG 103 (497)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~ 103 (497)
+.++..++++|.++..++++++..++++..++.+.|.+.+ + |++ .+|+|++.+++.+++.++
T Consensus 14 ~~~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~-~----------g~s-------~~~~g~~~s~~~~~~~~~ 75 (447)
T d1pw4a_ 14 EIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE-Q----------GFS-------RGDLGFALSGISIAYGFS 75 (447)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS-S----------TTC-------SSCHHHHHHHHHHHHHHH
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h----------CcC-------HHHHHHHHHHHHHHHHHH
Confidence 3445567788999999999999999999999999998865 6 888 999999999999999999
Q ss_pred HhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhH
Q 010904 104 MYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIM 183 (497)
Q Consensus 104 ~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 183 (497)
++++|+++||+|||+++.++.++.+++.++++++... .++++.+++.|++.|++.+...+...+++.|++|+++|++++
T Consensus 76 ~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~ 154 (447)
T d1pw4a_ 76 KFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIV 154 (447)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH-HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchh-hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999999998876111 146789999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHhhhHhh--cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccc
Q 010904 184 GVWNSHTSIGNIIGSVLASGVLE--FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENE 261 (497)
Q Consensus 184 ~~~~~~~~~G~~~g~~~~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (497)
++.+.+..+|..+++.+++.+.. .+||+.|++.+++.++..++.+++.+|.|++......++.. .+..
T Consensus 155 ~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 224 (447)
T d1pw4a_ 155 SVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------NDYP 224 (447)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC--
T ss_pred cccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh----------hhcc
Confidence 99999999999999998887763 48999999999999998888888888877765443332221 0000
Q ss_pred cccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhh
Q 010904 262 EVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVF 341 (497)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~ 341 (497)
++...+.+++....+...+..+++|.++......++.....+....+.|.|+.+. ++++..+.+.......++.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 300 (447)
T d1pw4a_ 225 DDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV----KHFALDKSSWAYFLYEYAGIP 300 (447)
T ss_dssp -----------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB----SCCCHHHHHHHHHHHHHHHHH
T ss_pred cchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccc----cccccchhhhhhhcchhhhhh
Confidence 0000011112233445567788899999999999999999999999999999998 899999999999999999999
Q ss_pred hhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHH--HhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhccccccccc
Q 010904 342 GGILAGLISDMIEARAVTSVAFLLLSIPALVL--YRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKG 419 (497)
Q Consensus 342 ~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (497)
+.++.|+++||+++++..........+..... .......+.+...+..++.|++.++..+.......+.+|+
T Consensus 301 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------ 374 (447)
T d1pw4a_ 301 GTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK------ 374 (447)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT------
T ss_pred hhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH------
Confidence 99999999999987755443333332222222 2222334566667777788888888788888888888886
Q ss_pred ccchhHHHHHHHhhhhhhh-hhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 010904 420 NSRALATVTAIIDGTGSVG-AALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRIVKAEIREK 483 (497)
Q Consensus 420 ~~~~~g~~~g~~~~~~~~g-~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (497)
+.+|++.|+.+.+.+++ ..++|.+.|++.|. |+...|++.+++.+++.++...+..+++|++
T Consensus 375 --~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 438 (447)
T d1pw4a_ 375 --KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRH 438 (447)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 44599999999988874 56688999999988 9999998888887777776666555444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=2.6e-30 Score=249.15 Aligned_cols=367 Identities=13% Similarity=0.076 Sum_probs=270.4
Q ss_pred ccccc-ccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHH
Q 010904 55 SIVKS-VLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTII 133 (497)
Q Consensus 55 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~ 133 (497)
.+..| ++.+++ |++ .+++|++.+++.+++.++++++|+++||+|||++++++..+..++.++
T Consensus 27 ~~~l~~~l~~~~----------g~s-------~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~ 89 (417)
T d1pv7a_ 27 FPFFPIWLHDIN----------HIS-------KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAP 89 (417)
T ss_dssp HHHHHHHHHHHH----------CCC-------HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHcc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 34444 467778 888 999999999999999999999999999999999999999999998888
Q ss_pred HhhhhhhhhhHHHH----HHHHHHHhhhhhcccchhhhhhhhcccCc--ccchhhHHHHHHHhhhHHHHHHHHhhhHhhc
Q 010904 134 FGLAYWLSVHLLVY----FVGVQIFCGLFQSIGWPCVVAVLGNWFGK--AKRGLIMGVWNSHTSIGNIIGSVLASGVLEF 207 (497)
Q Consensus 134 ~~~~~~~~~~~~~~----l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 207 (497)
..+. .+... .++.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++.+.+.
T Consensus 90 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 164 (417)
T d1pv7a_ 90 FFIF-----IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI 164 (417)
T ss_dssp HHHH-----THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-----hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc
Confidence 8876 44333 45556666666555555554444444433 3456677888888999999999999999988
Q ss_pred CcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCc
Q 010904 208 GWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPR 287 (497)
Q Consensus 208 gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (497)
+|+..+........+..++..+..+++++....++++++ ++.........+..+++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~ 221 (417)
T d1pv7a_ 165 NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGA-----------------------NHSAFSLKLALELFRQPK 221 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHS-----------------------CCCCCCHHHHHHHTTSSH
T ss_pred cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhh-----------------------hccccccccccccccccc
Confidence 888888888888777777777777776655432221111 111222333455666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHH
Q 010904 288 VAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLS 367 (497)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 367 (497)
.+....................+.+..... ...+.+....+.......++..++..+.+++.||.++|+.+..+..+.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~ 300 (417)
T d1pv7a_ 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFF-ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHhhhccccccccccc-cccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHH
Confidence 666555555555544444444444444320 0124455666777888889999999999999999999999998888888
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHH-hhhhhhhhhhhhccc
Q 010904 368 IPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAII-DGTGSVGAALGPLLA 446 (497)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~~~~~~ 446 (497)
+..+.+.. ..+.+..++..++.|++.+...+.......+.+|++ .+|++.|+. +....+|..++|.+.
T Consensus 301 ~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~i~~~~~ 369 (417)
T d1pv7a_ 301 VRIIGSSF---ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR--------FSATIYLVCFCFFKQLAMIFMSVLA 369 (417)
T ss_dssp HHHHHHHT---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG--------GHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred Hhhhcccc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655 356677777888889999888999999999999874 449999975 456679999999999
Q ss_pred ceeecc-CchHHHHHHHHHHHHHHHHHHHHHhh
Q 010904 447 GYISTR-GWNSVFFMLIVSILFAGMFLIRIVKA 478 (497)
Q Consensus 447 g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (497)
|++.|. |++..|++.+++.++..++..+..++
T Consensus 370 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 370 GNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999998 99999999888888777766665543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=1.7e-13 Score=131.93 Aligned_cols=149 Identities=15% Similarity=0.245 Sum_probs=123.5
Q ss_pred cCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhc-cCchhHHHHHHHHHHhhhccCc
Q 010904 321 VHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTY-GSISMITNIPLMFLSGLLVNGP 399 (497)
Q Consensus 321 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~ 399 (497)
+|+|..+.|++.+...++..++.++.|+++||+|||+.+..+.++.+++.++..... ...+.+..++..++.|++.+..
T Consensus 54 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 133 (447)
T d1pw4a_ 54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 133 (447)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHT
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhh
Confidence 699999999999999999999999999999999999999998888887776655421 1235566777788889998888
Q ss_pred chhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc--CchHHHHHHHHHHHHHHHHHHHHHh
Q 010904 400 YSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR--GWNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
++.....+.+.+|++ +|++++|+.+....+|..++|.+.+.+.+. +|+..+++.+.+.++..++.+...+
T Consensus 134 ~~~~~~~i~~~~~~~--------~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 134 WPPCGRTMVHWWSQK--------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp HHHHHHHHHTTCTTT--------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHhh--------cccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence 889999999998864 459999999999999999999988877665 7888888888777776666655543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=6.6e-15 Score=140.07 Aligned_cols=144 Identities=15% Similarity=0.045 Sum_probs=130.3
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+. ++.+.+++..++.|++.+...+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~ 332 (417)
T d1pv7a_ 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-----TSALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-----cccchhhHHHHHHHHHHHHHHHH
Confidence 6667888889999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred hhhhhhcccCcccchhhHHHH-HHHhhhHHHHHHHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecC
Q 010904 166 VVAVLGNWFGKAKRGLIMGVW-NSHTSIGNIIGSVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVR 234 (497)
Q Consensus 166 ~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~ 234 (497)
..+++.|.+|+++|+++.++. +....+|..++|.+++.+. ..||++.|++.+++.++..++..+.++++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999985 4567899999999999998 48999999999998888877777776543
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